Psyllid ID: psy15667

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280------
Protein Sequence
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK
Secondary Structure (PSIPRED)
cccEEEEcccEEEEcccccEEEEEEEEEEcccEEEEEEccEEccccccEEEEEEEEcccccEEEEEEccccccccEEEEEEEEEccEEEEEEEEEEcccEEEEccccEEEccccccEEEEEcccccccccEEEEEEEEcccccEEcEEEEEEcccccEEEcccEEEEccccEEEEcccccccccEEEEEEccccccccccccccccccccEEEEEEEEEcccccEEEEEEccEEccccccEEEEEcccccEEEEEccccccccEEEEEEEEEcccEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
cccEEEEccccEEEEcccEEEEEEEEEcccccEEEEEEcccEcccccccEEEEEEEEccccEEEEEEEEcccccccEEEEEEEcccEEEEEEEEcccccEEEEEcccEEEccccccEEEEEEEcccccccEEEEEEEccccccccccEEEEEEccccccccccEEEccccEEEEEEEEcccccccEEEccccccccccccccEEEEcccEEEEEEEEEccccccEEEEEEccEEccccccEEEEEEcccEEEEEEEccccccccEEEEEEEEccccEEEEEEEEEc
Coil and Loop (DISEMBL)
TPPILTYSFIEqtlqpgpavslkciasgnptpdigwtldgfelptnnrfvIGQFvsghgdvishvnishvtvedggeyacvaenragtceitpydsgpyLIAWfkdgrqipgrtsstslvinpvgredrgiyqciarrsdgdvaqgsaelqlgglpyvrlipkvtaidgeglsikcpvagypieevhwekvppkiesfafpfdglpegartrvicgvthgdppltirwlkdgkplsprfpvnvsdldsfSSLLsinsvsaahsgeytcvasntaaQARYSSKLQVK
Flexible Loop (DISEMBL)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGrqipgrtsstslvinpvgreDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASntaaqaryssklqvk
Low Complexity Region (SEG)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPvnvsdldsfssllsinsvsAAHSGEYTCVASNTAAQARYSSKLQVK
Disordered region (IsUnstruct)
***ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA****************
Disordered Region (DISOPRED)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAW**************SLVINPVGREDRGIYQCIARRSDG***************************GEGLSIKCPVAGYPIEEVH*EKV****************GARTRVICGVTHGDPPLTIRWLKDGK*************DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK
Disordered Region (DISEMBL)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ**********
Disordered Region (DISPRO)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
oooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiii
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	286	2.2.26 [Sep-21-2011]
Q9VS29	2074	Down syndrome cell adhesi	yes	N/A	0.863	0.119	0.492	2e-66
O60469	2012	Down syndrome cell adhesi	yes	N/A	0.916	0.130	0.303	3e-27
Q9ERC8	2013	Down syndrome cell adhesi	yes	N/A	0.916	0.130	0.300	6e-27
Q8VHZ8	2013	Down syndrome cell adhesi	yes	N/A	0.916	0.130	0.300	6e-27
Q4VA61	2053	Down syndrome cell adhesi	no	N/A	0.951	0.132	0.308	6e-22
Q8TD84	2053	Down syndrome cell adhesi	no	N/A	0.951	0.132	0.308	7e-22
A2ASS6	35213	Titin OS=Mus musculus GN=	no	N/A	0.790	0.006	0.255	4e-14
Q8WZ42	34350	Titin OS=Homo sapiens GN=	no	N/A	0.783	0.006	0.250	2e-13
O01761	8081	Muscle M-line assembly pr	no	N/A	0.898	0.031	0.230	4e-12
Q8NDA2	5065	Hemicentin-2 OS=Homo sapi	no	N/A	0.804	0.045	0.254	6e-12

>sp|Q9VS29|DSCL_DROME Down syndrome cell adhesion molecule-like protein Dscam2 OS=Drosophila melanogaster GN=Dscam2 PE=2 SV=3

 Score =  252 bits (644), Expect = 2e-66,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 185/321 (57%), Gaps = 74/321 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP I WTLDGF LP+N RF+IGQ+++ HGDV
Sbjct: 422 PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDV 481

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
           ISHVNISHV VEDGGEYAC+AENRAG  +          PY          SG  L    
Sbjct: 482 ISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKC 541

Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
                    I W + GR++P           SL I+PV +  D G+Y C AR   G  A+
Sbjct: 542 PVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSAR 601

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
            S E              VT I                       VPP IE FAF  +GL
Sbjct: 602 RSGE--------------VTVI-----------------------VPPSIEPFAFQ-EGL 623

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG RTR +CGV+ GDPPL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGE
Sbjct: 624 AEGMRTRTVCGVSRGDPPLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGE 683

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTCVA N AA+ +Y++ LQVK
Sbjct: 684 YTCVAKNPAAEIKYTALLQVK 704

Cell adhesion molecule.
Drosophila melanogaster (taxid: 7227)

>sp|O60469|DSCAM_HUMAN Down syndrome cell adhesion molecule OS=Homo sapiens GN=DSCAM PE=1 SV=2

 Score =  122 bits (305), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/306 (30%), Positives = 144/306 (47%), Gaps = 44/306 (14%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TP I++ +F E+ + P   VSL C   G P P I WTLD   +       I Q ++  G+
Sbjct: 406 TPKIIS-AFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGN 464

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS-----GPYLIAWFKDGRQIPGRTS 115
           V+S++NIS   V DGG Y C A N AG   +  Y +     GP  I   K+   I GR  
Sbjct: 465 VVSYLNISSSQVRDGGVYRCTANNSAG---VVLYQARINVRGPASIRPMKNITAIAGR-- 519

Query: 116 STSLVINPVGREDRGI------------YQCIARRSDGDVAQGSAELQLGGLPY---VRL 160
            T +    +G     I            ++ +A  ++G +     + ++    Y   V +
Sbjct: 520 DTYIHCRVIGYPYYSIKWYKNSNLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLV 579

Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
            P+++      +++K               VPP I+ F FP   +  G R  + C V  G
Sbjct: 580 QPQLSTSQSVHVTVK---------------VPPFIQPFEFPRFSI--GQRVFIPCVVVSG 622

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           D P+TI W KDG+P+     V + ++D F+S L I+++S  H+G YTC+A N AA   + 
Sbjct: 623 DLPITITWQKDGRPIPGSLGVTIDNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQ 681

Query: 281 SKLQVK 286
           S+L V+
Sbjct: 682 SQLIVR 687

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Homo sapiens (taxid: 9606)

>sp|Q9ERC8|DSCAM_MOUSE Down syndrome cell adhesion molecule homolog OS=Mus musculus GN=Dscam PE=1 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 44/306 (14%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TP I++ +F E+ + P   VSL C   G P P + WTLD   +   +   I Q ++  G+
Sbjct: 406 TPKIIS-AFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGN 464

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS-----GPYLIAWFKDGRQIPGRTS 115
           V+S++NIS   V DGG Y C A N AG   +  Y +     GP  I   K+   I GR  
Sbjct: 465 VVSYLNISSSQVRDGGVYRCTANNSAG---VVLYQARINVRGPASIRPMKNITAIAGR-- 519

Query: 116 STSLVINPVGREDRGI------------YQCIARRSDGDVAQGSAELQLGGLPY---VRL 160
            T +    +G     I            ++ +A  ++G +     + ++    Y   V +
Sbjct: 520 DTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLV 579

Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
            P+++      +++K               VPP I+ F FP   +  G R  + C V  G
Sbjct: 580 QPQLSTSQSVHVTVK---------------VPPFIQPFEFPRFSI--GQRVFIPCVVVSG 622

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           D P+TI W KDG+P+     V + ++D F+S L I+++S  H+G YTC+A N AA   + 
Sbjct: 623 DLPITITWQKDGRPIPASLGVTIDNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQ 681

Query: 281 SKLQVK 286
           S+L V+
Sbjct: 682 SQLIVR 687

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38.

Mus musculus (taxid: 10090)

>sp|Q8VHZ8|DSCAM_RAT Down syndrome cell adhesion molecule homolog OS=Rattus norvegicus GN=Dscam PE=1 SV=1

 Score =  121 bits (303), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 92/306 (30%), Positives = 145/306 (47%), Gaps = 44/306 (14%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TP I++ +F E+ + P   VSL C   G P P + WTLD   +   +   I Q ++  G+
Sbjct: 406 TPKIIS-AFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGN 464

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS-----GPYLIAWFKDGRQIPGRTS 115
           V+S++NIS   V DGG Y C A N AG   +  Y +     GP  I   K+   I GR  
Sbjct: 465 VVSYLNISSSQVRDGGVYRCTANNSAG---VVLYQARINVRGPASIRPMKNITAIAGR-- 519

Query: 116 STSLVINPVGREDRGI------------YQCIARRSDGDVAQGSAELQLGGLPY---VRL 160
            T +    +G     I            ++ +A  ++G +     + ++    Y   V +
Sbjct: 520 DTYIHCRVIGYPYYSIKWYKNANLLPFNHRQVAFENNGTLKLSDVQKEVDEGEYTCNVLV 579

Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
            P+++      +++K               VPP I+ F FP   +  G R  + C V  G
Sbjct: 580 QPQLSTSQSVHVTVK---------------VPPFIQPFEFPRFSI--GQRVFIPCVVVSG 622

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           D P+TI W KDG+P+     V + ++D F+S L I+++S  H+G YTC+A N AA   + 
Sbjct: 623 DLPITITWQKDGRPIPASLGVTIDNID-FTSSLRISNLSLMHNGNYTCIARNEAAAVEHQ 681

Query: 281 SKLQVK 286
           S+L V+
Sbjct: 682 SQLIVR 687

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Mediates within retinal amacrine and ganglion cell subtypes both isoneuronal self-avoidance for creating an orderly dendritic arborization and heteroneuronal self-avoidance to maintain the mosaic spacing between amacrine and ganglion cell bodies. In spinal chord development plays a role in guiding commissural axons projection and pathfinding across the ventral midline to reach the floor plate upon ligand binding. Enhances netrin-induced phosphorylation of PAK1 and FYN. Mediates intracellular signaling by stimulating the activation of MAPK8 and MAP kinase p38 (By similarity). Receptor for netrin required for axon guidance independently of and in collaboration with the receptor DCC.

Rattus norvegicus (taxid: 10116)

>sp|Q4VA61|DSCL1_MOUSE Down syndrome cell adhesion molecule-like protein 1 homolog OS=Mus musculus GN=Dscaml1 PE=1 SV=2

 Score =  104 bits (260), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 129/292 (44%), Gaps = 20/292 (6%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P +  SF E+ + PG   SL C A G P P + W LD   +  +      Q+    G  I
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPVVRDGSHRTNQYTMSDGTTI 467

Query: 63  SHVNISHVTVEDGGEYACVAENRAGTCEITPYDS--GPYLIAWFKDGRQIPGRTSSTSLV 120
           SH+N++   + DGG Y C A N  G+ E     +  GP  I   ++   + GR   T + 
Sbjct: 468 SHMNVTGPQIRDGGVYRCTARNSVGSAEYQARINVRGPPSIRAMRNITAVAGR--DTLIN 525

Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID-GEGLSIKCPVA 179
              +G      Y  I    D  +   +    +     ++L      +D GE L   C V 
Sbjct: 526 CRVIGYP----YYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYL---CSVL 578

Query: 180 GYP----IEEVHWE-KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 234
             P     + VH   KVPP I+ F FP   +  G    + C V+ GD P+ I W KDG+ 
Sbjct: 579 IQPQLSISQSVHVAVKVPPLIQPFEFPPASI--GQLLYIPCVVSSGDMPIRITWRKDGQV 636

Query: 235 LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +     V +   + F S L I+SVS  H+G YTC+ASN AA      +L V+
Sbjct: 637 IISGSGVTIESKE-FMSSLQISSVSLKHNGNYTCIASNAAATVSRERQLIVR 687

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Mus musculus (taxid: 10090)

>sp|Q8TD84|DSCL1_HUMAN Down syndrome cell adhesion molecule-like protein 1 OS=Homo sapiens GN=DSCAML1 PE=1 SV=2

 Score =  104 bits (260), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 90/292 (30%), Positives = 129/292 (44%), Gaps = 20/292 (6%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P +  SF E+ + PG   SL C A G P P + W LD   +  +      Q+    G  I
Sbjct: 408 PRIVSSFSEKVVNPGEQFSLMCAAKGAPPPTVTWALDDEPIVRDGSHRTNQYTMSDGTTI 467

Query: 63  SHVNISHVTVEDGGEYACVAENRAGTCEITPYDS--GPYLIAWFKDGRQIPGRTSSTSLV 120
           SH+N++   + DGG Y C A N  G+ E     +  GP  I   ++   + GR   T + 
Sbjct: 468 SHMNVTGPQIRDGGVYRCTARNLVGSAEYQARINVRGPPSIRAMRNITAVAGR--DTLIN 525

Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID-GEGLSIKCPVA 179
              +G      Y  I    D  +   +    +     ++L      +D GE L   C V 
Sbjct: 526 CRVIGYP----YYSIKWYKDALLLPDNHRQVVFENGTLKLTDVQKGMDEGEYL---CSVL 578

Query: 180 GYP----IEEVHWE-KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 234
             P     + VH   KVPP I+ F FP   +  G    + C V+ GD P+ I W KDG+ 
Sbjct: 579 IQPQLSISQSVHVAVKVPPLIQPFEFPPASI--GQLLYIPCVVSSGDMPIRITWRKDGQV 636

Query: 235 LSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +     V +   + F S L I+SVS  H+G YTC+ASN AA      +L V+
Sbjct: 637 IISGSGVTIESKE-FMSSLQISSVSLKHNGNYTCIASNAAATVSRERQLIVR 687

Cell adhesion molecule that plays a role in neuronal self-avoidance. Promotes repulsion between specific neuronal processes of either the same cell or the same subtype of cells. Promotes both isoneuronal self-avoidance for creating an orderly neurite arborization in retinal rod bipolar cells and heteroneuronal self-avoidance to maintain mosaic spacing between AII amacrine cells.

Homo sapiens (taxid: 9606)

>sp|A2ASS6|TITIN_MOUSE Titin OS=Mus musculus GN=Ttn PE=1 SV=1

 Score = 79.0 bits (193), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 80/313 (25%), Positives = 121/313 (38%), Gaps = 87/313 (27%)

Query: 14   LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
            L+ G + + +C  +G P   + W LDG E+    ++ I  FV G    ++   IS+  VE
Sbjct: 5761 LRNGQSTTFECQVTGTPEIRVSWYLDGNEITDLRKYGIS-FVDG----LATFQISNARVE 5815

Query: 74   DGGEYACVAENRAGTC----------------EITPYD---------------SGPYLIA 102
            + G Y C A N AGT                 E+ P +               + P+ + 
Sbjct: 5816 NSGTYVCEARNDAGTASCSIELKVKEPPIFIRELEPVEVVKDSDVELECEVMGTTPFEVT 5875

Query: 103  WFKDGRQI-PGRTSSTS-------LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
            W K+ ++I  G+  + S       L I      D G YQCI     G  A  SA + L  
Sbjct: 5876 WLKNNKEIRSGKKYTMSEKMSVFYLHITKCDPSDVGEYQCIIANEGGSCA-CSARVALKE 5934

Query: 155  LP-YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
             P +++ I  VT +     + +  VAG                                 
Sbjct: 5935 PPSFIKKIENVTTVLKSSATFQSTVAG--------------------------------- 5961

Query: 214  ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273
                    PP++I WLKD + L     V++S  DS ++ L + SV   HSG YTC A N 
Sbjct: 5962 -------SPPISITWLKDDQILEENDNVHISFEDSVAT-LQVRSVDNGHSGRYTCQAKNE 6013

Query: 274  AAQARYSSKLQVK 286
            +   R  + L V+
Sbjct: 6014 SGIERCYAFLLVQ 6026

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|Q8WZ42|TITIN_HUMAN Titin OS=Homo sapiens GN=TTN PE=1 SV=4

 Score = 76.6 bits (187), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 79/315 (25%), Positives = 117/315 (37%), Gaps = 91/315 (28%)

Query: 14   LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
            L+ G + + +C  +G P   + W LDG E+    +  I  F+ G    ++   IS   VE
Sbjct: 5800 LRNGQSTTFECQITGTPKIRVSWYLDGNEITAIQKHGIS-FIDG----LATFQISGARVE 5854

Query: 74   DGGEYACVAENRAGT---------------------------------CEITPYDSGPYL 100
            + G Y C A N AGT                                 CE+T   + P+ 
Sbjct: 5855 NSGTYVCEARNDAGTASCSIELKVKEPPTFIRELKPVEVVKYSDVELECEVT--GTPPFE 5912

Query: 101  IAWFKDGRQIPG--------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
            + W K+ R+I          R S  +L I      D G YQCI   ++G     S  + L
Sbjct: 5913 VTWLKNNREIRSSKKYTLTDRVSVFNLHITKCDPSDTGEYQCIVS-NEGGSCSCSTRVAL 5971

Query: 153  GGLP-YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
               P +++ I   T +     + +  VAG                               
Sbjct: 5972 KEPPSFIKKIENTTTVLKSSATFQSTVAG------------------------------- 6000

Query: 212  RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
                      PP++I WLKD + L     V +S +DS ++ L I SV   HSG YTC A 
Sbjct: 6001 ---------SPPISITWLKDDQILDEDDNVYISFVDSVAT-LQIRSVDNGHSGRYTCQAK 6050

Query: 272  NTAAQARYSSKLQVK 286
            N +   R  + L V+
Sbjct: 6051 NESGVERCYAFLLVQ 6065

Key component in the assembly and functioning of vertebrate striated muscles. By providing connections at the level of individual microfilaments, it contributes to the fine balance of forces between the two halves of the sarcomere. The size and extensibility of the cross-links are the main determinants of sarcomere extensibility properties of muscle. In non-muscle cells, seems to play a role in chromosome condensation and chromosome segregation during mitosis. Might link the lamina network to chromatin or nuclear actin, or both during interphase.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: 1

EC: .

EC: 1

>sp|O01761|UNC89_CAEEL Muscle M-line assembly protein unc-89 OS=Caenorhabditis elegans GN=unc-89 PE=1 SV=3

 Score = 72.4 bits (176), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 78/339 (23%), Positives = 122/339 (35%), Gaps = 82/339 (24%)

Query: 2    PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            PP       + ++  G  + L+C  +G P P + W+ DG  L  ++RF   ++ +     
Sbjct: 5594 PPKFILELSDMSVSLGNVIDLECKVTGLPNPSVKWSKDGGPLIEDSRF---EWSNEASKG 5650

Query: 62   ISHVNISHVTVEDGGEYACVAENRAGTCEITPY--------------------------- 94
            +  + I + TV D G Y CVA N  G+     +                           
Sbjct: 5651 VYQLRIKNATVHDEGTYRCVATNENGSATTKSFVRMDDGLGSGVVTASQPPRFTLKMGDV 5710

Query: 95   --------------DSGPY-LIAWFKDGRQIPGRTSSTSLVINPVG----------REDR 129
                          D+ P   + W+KDG  I   +    + ++P G           +D 
Sbjct: 5711 RTTEGQPLKLECKVDASPLPEMVWYKDG-AIVTPSDRIQISLSPDGVATLLIPSCVYDDD 5769

Query: 130  GIYQCIARRSDGDVAQGSAELQLGGLPY---VRLIPKVTAIDGEGLSIKCPVAGYPIEEV 186
            GIY+ IA    G  AQ      +  LP     R        D      K P    P+E +
Sbjct: 5770 GIYRVIATNPSG-TAQDKGTATVKKLPRDSGARRSADRDVFDAN----KAPKLMEPLENI 5824

Query: 187  HWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL 246
                              +PE    R+ C  + GDP  TI+W KDG+ + P   + + + 
Sbjct: 5825 R-----------------IPEKQSFRLRCKFS-GDPKPTIKWFKDGERVFPYGRLQLIES 5866

Query: 247  DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                  L ++S +   +G Y CVA NT   AR S  + V
Sbjct: 5867 PDGVCELVVDSATRQDAGGYRCVAENTYGSARTSCDVNV 5905

Structural component of the muscle M-line. Myofilament lattice assembly begins with positional cues laid down in the basement membrane and muscle cell membrane. UNC-89 responds to these signals, localizes, and then participates in assembling an M-line.

Caenorhabditis elegans (taxid: 6239)

>sp|Q8NDA2|HMCN2_HUMAN Hemicentin-2 OS=Homo sapiens GN=HMCN2 PE=2 SV=2

 Score = 71.6 bits (174), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 82/322 (25%), Positives = 123/322 (38%), Gaps = 92/322 (28%)

Query: 3    PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
            P+ T    +++L+ G  + L+C A G+PTP IGWT+       N+R V        G   
Sbjct: 4129 PVFTTLPGDRSLRLGDRLWLRCAARGSPTPRIGWTV-------NDRPVTEGVSEQDGG-- 4179

Query: 63   SHVNISHVTVEDGGEYACVAENRAGTCEITPY-----------DSGPYL----------- 100
            S +  + V+ ED G Y C AENR G  +   +           ++  YL           
Sbjct: 4180 STLQRAAVSREDSGTYVCWAENRVGRTQAVSFVHVKEAPVLQGEAFSYLVEPVGGSIQLD 4239

Query: 101  ----------IAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
                      I W KDG  + G     +  + SL I+   R+D G YQC+A    G VA+
Sbjct: 4240 CVVRGDPVPDIHWIKDGLPLRGSHLRHQLQNGSLTIHRTERDDAGRYQCLAENEMG-VAK 4298

Query: 146  GSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
                L L   P  ++ P+ +T   G+ ++++C   G P                      
Sbjct: 4299 KVVILVLQSAPVFQVEPQDMTVRSGDDVALRCQATGEPTP-------------------- 4338

Query: 205  LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
                                TI WL+ G+PL  R    +  L   S  L + +V    +G
Sbjct: 4339 --------------------TIEWLQAGQPL--RASRRLRTLPDGS--LWLENVETGDAG 4374

Query: 265  EYTCVASNTAAQARYSSKLQVK 286
             Y CVA N    A   + L V+
Sbjct: 4375 TYDCVAHNLLGSATARAFLVVR 4396

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
158293632	1729	AGAP004902-PB [Anopheles gambiae str. PE	0.860	0.142	0.479	1e-67
158293630	1874	AGAP004902-PA [Anopheles gambiae str. PE	0.860	0.131	0.479	2e-67
157135807	1870	down syndrome cell adhesion molecule [Ae	0.860	0.131	0.472	5e-67
383854374	2032	PREDICTED: Down syndrome cell adhesion m	0.860	0.121	0.467	3e-66
242017653	1653	down syndrome cell adhesion molecule, pu	0.863	0.149	0.470	3e-65
112732546	1923	cell adhesion molecule AbsCAM-Ig7B [Apis	0.860	0.127	0.460	3e-65
221330924	2074	down syndrome cell adhesion molecule 2,	0.863	0.119	0.492	1e-64
307169849	1609	Down syndrome cell adhesion molecule [Ca	0.860	0.152	0.461	1e-64
221330920	2040	down syndrome cell adhesion molecule 2,	0.863	0.121	0.492	1e-64
442630666	2036	down syndrome cell adhesion molecule 2,	0.863	0.121	0.492	1e-64

>gi|158293632|ref|XP_314993.4| AGAP004902-PB [Anopheles gambiae str. PEST] gi|157016540|gb|EAA10381.5| AGAP004902-PB [Anopheles gambiae str. PEST]

 Score =  262 bits (669), Expect = 1e-67,   Method: Compositional matrix adjust.
 Identities = 155/323 (47%), Positives = 185/323 (57%), Gaps = 77/323 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP L YSFIEQTLQPGPAVSLKC A GNPTP I WTLDGF LPTN RF+IGQ+V+ HGDV
Sbjct: 388 PPSLVYSFIEQTLQPGPAVSLKCSAQGNPTPQIAWTLDGFPLPTNGRFMIGQYVTVHGDV 447

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           ISHVNISHV VEDGGEY+C AENRAG    +  +  Y   PY+                 
Sbjct: 448 ISHVNISHVMVEDGGEYSCAAENRAGKTSHSARLNIYGL-PYIRLIPKVTAVAGHTLYLK 506

Query: 101 ----------IAWFKDGRQIPGRT-----SSTSLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W + GR++P        S  +L I  V +  D G+Y C AR   G  A
Sbjct: 507 CPVAGYPIEEIHWERGGRELPEDMRQKVQSDGTLEIKEVQKSLDSGVYTCWARNKQGHSA 566

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S E+ +                                      VPP IE F+F  DG
Sbjct: 567 RRSGEVAV-------------------------------------IVPPNIEPFSFQ-DG 588

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           L EG RTR +CGV+ GDPPLT++WLKDG P LS     NVS LD +SSLL+I S+SAAHS
Sbjct: 589 LAEGMRTRTVCGVSKGDPPLTLKWLKDGDPLLSTLLGANVSTLDQYSSLLNIPSLSAAHS 648

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G+YTCVASN AA+ ++++ LQVK
Sbjct: 649 GDYTCVASNPAAEVKFTASLQVK 671

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|158293630|ref|XP_001688600.1| AGAP004902-PA [Anopheles gambiae str. PEST] gi|157016539|gb|EDO63980.1| AGAP004902-PA [Anopheles gambiae str. PEST]

 Score =  262 bits (669), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 155/323 (47%), Positives = 185/323 (57%), Gaps = 77/323 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP L YSFIEQTLQPGPAVSLKC A GNPTP I WTLDGF LPTN RF+IGQ+V+ HGDV
Sbjct: 388 PPSLVYSFIEQTLQPGPAVSLKCSAQGNPTPQIAWTLDGFPLPTNGRFMIGQYVTVHGDV 447

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           ISHVNISHV VEDGGEY+C AENRAG    +  +  Y   PY+                 
Sbjct: 448 ISHVNISHVMVEDGGEYSCAAENRAGKTSHSARLNIYGL-PYIRLIPKVTAVAGHTLYLK 506

Query: 101 ----------IAWFKDGRQIPGRT-----SSTSLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W + GR++P        S  +L I  V +  D G+Y C AR   G  A
Sbjct: 507 CPVAGYPIEEIHWERGGRELPEDMRQKVQSDGTLEIKEVQKSLDSGVYTCWARNKQGHSA 566

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S E+ +                                      VPP IE F+F  DG
Sbjct: 567 RRSGEVAV-------------------------------------IVPPNIEPFSFQ-DG 588

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           L EG RTR +CGV+ GDPPLT++WLKDG P LS     NVS LD +SSLL+I S+SAAHS
Sbjct: 589 LAEGMRTRTVCGVSKGDPPLTLKWLKDGDPLLSTLLGANVSTLDQYSSLLNIPSLSAAHS 648

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G+YTCVASN AA+ ++++ LQVK
Sbjct: 649 GDYTCVASNPAAEVKFTASLQVK 671

Source: Anopheles gambiae str. PEST

Species: Anopheles gambiae

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157135807|ref|XP_001663602.1| down syndrome cell adhesion molecule [Aedes aegypti] gi|108870110|gb|EAT34335.1| AAEL013409-PA [Aedes aegypti]

 Score =  260 bits (664), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 152/322 (47%), Positives = 183/322 (56%), Gaps = 76/322 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP L YSFIEQTLQPGPAVSLKC A GNPTP I WTLDGF LPTN RF+IG +V+ HGDV
Sbjct: 388 PPSLVYSFIEQTLQPGPAVSLKCSAQGNPTPHISWTLDGFPLPTNGRFMIGHYVTVHGDV 447

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           I+HVNISHV VEDGGEY+C+AENRAG    +  +  Y   PY+                 
Sbjct: 448 IAHVNISHVMVEDGGEYSCIAENRAGKTSHSARLNIYGL-PYIRLIPKVTAVAGQTLYLK 506

Query: 101 ----------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W + GR++P           +L I  V +  D G+Y C AR   G  A
Sbjct: 507 CPVAGYPIEEIHWERGGRELPEDMRQKVQTDGTLEIKEVQKSLDSGVYTCWARNKQGHSA 566

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S E              VT I                       VPP IE F+F  DG
Sbjct: 567 RRSGE--------------VTVI-----------------------VPPNIEPFSFQ-DG 588

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           L EG RTR +CGV+ GD P++ +WLKDG PLS     NVS LD +SSLL+I S+SAAHSG
Sbjct: 589 LAEGMRTRTVCGVSKGDQPMSFKWLKDGDPLSSMLGANVSTLDQYSSLLNIPSLSAAHSG 648

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
           +YTCVASN AA+ ++++ LQVK
Sbjct: 649 DYTCVASNPAAEVKFTASLQVK 670

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383854374|ref|XP_003702696.1| PREDICTED: Down syndrome cell adhesion molecule-like protein Dscam2-like [Megachile rotundata]

 Score =  258 bits (658), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 153/327 (46%), Positives = 184/327 (56%), Gaps = 81/327 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP + W LDGF LPTN RFVIGQ+V+ HGDV
Sbjct: 529 PPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVSWALDGFPLPTNGRFVIGQYVTVHGDV 588

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           ISHVNISHV VEDGGEY+C AENRAG       +  Y   PY+                 
Sbjct: 589 ISHVNISHVMVEDGGEYSCTAENRAGKVTHAARLNVYGL-PYIRLIPKVTAVAGETLRLK 647

Query: 101 ----------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W +  R++P           +LVIN V ++ D G+Y C AR   G  A
Sbjct: 648 CPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVINSVQKKGDAGVYTCSARNKQGHSA 707

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S ++ +                                      VPP IE F F  +G
Sbjct: 708 RRSGDVAV-------------------------------------IVPPIIEPFTFQ-EG 729

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGK---PLSPRFP--VNVSDLDSFSSLLSINSVS 259
           L EG RTR +CGV  GDPPLTI WLKDG+   PL P      NVS LD +SSLLSI +++
Sbjct: 730 LSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASVANVSQLDPYSSLLSITNLA 789

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
           A HSG+YTCVA+N AA+ RY++KLQVK
Sbjct: 790 AEHSGDYTCVAANPAAEVRYTAKLQVK 816

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242017653|ref|XP_002429302.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis] gi|212514198|gb|EEB16564.1| down syndrome cell adhesion molecule, putative [Pediculus humanus corporis]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 152/323 (47%), Positives = 182/323 (56%), Gaps = 76/323 (23%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TPP L YSFIEQTLQPGP VSLKC A+GNPTP I WTLDGF LP N RFVIGQ+++ HGD
Sbjct: 192 TPPSLLYSFIEQTLQPGPPVSLKCSAAGNPTPQIIWTLDGFPLPNNGRFVIGQYMTVHGD 251

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL---------------- 100
           VISHVNIS V VEDGGEY CVAENRAG    +  +  Y   PY+                
Sbjct: 252 VISHVNISQVAVEDGGEYTCVAENRAGKVSHSARLNVY-GLPYIRLIPKITAIAGETLRL 310

Query: 101 -----------IAWFKDGRQIP-----GRTSSTSLVINPVGRE-DRGIYQCIARRSDGDV 143
                      I W + G+ +P        S  +LVI  V +E D G+Y C A+   G  
Sbjct: 311 KCPVAGFPIEEIHWERGGKLLPVEIRQNVESDGTLVIMSVQKETDVGVYSCWAKNKQGKS 370

Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
           A+ SAE+ +                                      VPP IE F+F  D
Sbjct: 371 ARRSAEVAV-------------------------------------IVPPIIEPFSFQ-D 392

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           GL EG RTR +CGV+ GDPPLTI WLKDG  L P    N + LD++SSLLSI S+++ HS
Sbjct: 393 GLSEGMRTRTVCGVSQGDPPLTITWLKDGGSLPPHLGANYTTLDAYSSLLSIPSLTSLHS 452

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G+YTCVASN  A+ RY++KL VK
Sbjct: 453 GDYTCVASNPVAELRYTAKLLVK 475

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|112732546|dbj|BAF03050.1| cell adhesion molecule AbsCAM-Ig7B [Apis mellifera]

 Score =  254 bits (649), Expect = 3e-65,   Method: Compositional matrix adjust.
 Identities = 150/326 (46%), Positives = 184/326 (56%), Gaps = 80/326 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP + W LDGF LPTN RF+IGQ+V+ HGDV
Sbjct: 421 PPMLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVTWALDGFALPTNGRFMIGQYVTVHGDV 480

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           ISHVNISHV VEDGGEY+C+AENRAG       +  Y   PY+                 
Sbjct: 481 ISHVNISHVMVEDGGEYSCMAENRAGKVTHAARLNVYGL-PYIRLIPKVTAVAGETLRLK 539

Query: 101 ----------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W +  R++P           +LVI  V ++ D G+Y C AR   G  A
Sbjct: 540 CPVAGYPIEEIKWERANRELPDDLRQKVLPDGTLVITSVQKKGDAGVYTCSARNKQGHSA 599

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S ++ +                                      VPP IE F F  +G
Sbjct: 600 RRSGDVAV-------------------------------------IVPPIIEPFTFQ-EG 621

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGK---PLSPRFP-VNVSDLDSFSSLLSINSVSA 260
           L EG RTR +CGV  GDPPLTI WLKDG+   PL P     N+S LD +SSLLSI +++A
Sbjct: 622 LSEGMRTRTVCGVAAGDPPLTISWLKDGQSPFPLPPNLASANISQLDPYSSLLSITNLAA 681

Query: 261 AHSGEYTCVASNTAAQARYSSKLQVK 286
            HSG+YTCVA+N AA+ RY++KLQVK
Sbjct: 682 EHSGDYTCVAANPAAEVRYTAKLQVK 707

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330924|ref|NP_729225.2| down syndrome cell adhesion molecule 2, isoform J [Drosophila melanogaster] gi|238064982|sp|Q9VS29.3|DSCL_DROME RecName: Full=Down syndrome cell adhesion molecule-like protein Dscam2; Flags: Precursor gi|220902489|gb|AAF50601.3| down syndrome cell adhesion molecule 2, isoform J [Drosophila melanogaster]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 185/321 (57%), Gaps = 74/321 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP I WTLDGF LP+N RF+IGQ+++ HGDV
Sbjct: 422 PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDV 481

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
           ISHVNISHV VEDGGEYAC+AENRAG  +          PY          SG  L    
Sbjct: 482 ISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKC 541

Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
                    I W + GR++P           SL I+PV +  D G+Y C AR   G  A+
Sbjct: 542 PVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSAR 601

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
            S E              VT I                       VPP IE FAF  +GL
Sbjct: 602 RSGE--------------VTVI-----------------------VPPSIEPFAFQ-EGL 623

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG RTR +CGV+ GDPPL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGE
Sbjct: 624 AEGMRTRTVCGVSRGDPPLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGE 683

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTCVA N AA+ +Y++ LQVK
Sbjct: 684 YTCVAKNPAAEIKYTALLQVK 704

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307169849|gb|EFN62358.1| Down syndrome cell adhesion molecule [Camponotus floridanus]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 151/327 (46%), Positives = 182/327 (55%), Gaps = 81/327 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP + W LDGF LPTN RFVIGQ+V+ HGDV
Sbjct: 394 PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQVSWALDGFPLPTNGRFVIGQYVTVHGDV 453

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSGPYL----------------- 100
           ISHVNISHV VEDGGEY+C AENRAG       +  Y   PY+                 
Sbjct: 454 ISHVNISHVMVEDGGEYSCTAENRAGKVTHAARLNVYGL-PYIRLIPKVTAVAGETLRLK 512

Query: 101 ----------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVA 144
                     I W K  R++P           +L+I+ V +  D G+Y C AR   G  A
Sbjct: 513 CPVAGYPIEEIKWEKSSRELPDNLRQKVLPDGTLMISSVQKNGDPGVYTCWARNKQGHSA 572

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
           + S ++ +                                      VPP IE F F  +G
Sbjct: 573 RRSGDVAV-------------------------------------IVPPIIEPFTFQ-EG 594

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVS 259
           L EG RTR +CGV  G PPLTI WLKDG+  SP  P      NVS LD +SSLLSI +++
Sbjct: 595 LSEGMRTRTVCGVAAGGPPLTISWLKDGQNPSPLPPNLASVANVSQLDPYSSLLSITNLA 654

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
           A HSG+YTCVA+N AA+ RY++KLQVK
Sbjct: 655 AEHSGDYTCVAANPAAEVRYTAKLQVK 681

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|221330920|ref|NP_729223.2| down syndrome cell adhesion molecule 2, isoform H [Drosophila melanogaster] gi|220902487|gb|AAF50602.3| down syndrome cell adhesion molecule 2, isoform H [Drosophila melanogaster]

 Score =  252 bits (644), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 185/321 (57%), Gaps = 74/321 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP I WTLDGF LP+N RF+IGQ+++ HGDV
Sbjct: 422 PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDV 481

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
           ISHVNISHV VEDGGEYAC+AENRAG  +          PY          SG  L    
Sbjct: 482 ISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKC 541

Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
                    I W + GR++P           SL I+PV +  D G+Y C AR   G  A+
Sbjct: 542 PVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSAR 601

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
            S E              VT I                       VPP IE FAF  +GL
Sbjct: 602 RSGE--------------VTVI-----------------------VPPSIEPFAFQ-EGL 623

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG RTR +CGV+ GDPPL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGE
Sbjct: 624 AEGMRTRTVCGVSRGDPPLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGE 683

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTCVA N AA+ +Y++ LQVK
Sbjct: 684 YTCVAKNPAAEIKYTALLQVK 704

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|442630666|ref|NP_001261499.1| down syndrome cell adhesion molecule 2, isoform O [Drosophila melanogaster] gi|440215398|gb|AGB94194.1| down syndrome cell adhesion molecule 2, isoform O [Drosophila melanogaster]

 Score =  252 bits (643), Expect = 1e-64,   Method: Compositional matrix adjust.
 Identities = 158/321 (49%), Positives = 185/321 (57%), Gaps = 74/321 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP+L YSFIEQTLQPGPAVSLKC A+GNPTP I WTLDGF LP+N RF+IGQ+++ HGDV
Sbjct: 422 PPVLLYSFIEQTLQPGPAVSLKCSAAGNPTPQISWTLDGFPLPSNGRFMIGQYITVHGDV 481

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
           ISHVNISHV VEDGGEYAC+AENRAG  +          PY          SG  L    
Sbjct: 482 ISHVNISHVMVEDGGEYACIAENRAGRVQHAARLNIYGLPYIRLIPKVTAVSGETLNLKC 541

Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
                    I W + GR++P           SL I+PV +  D G+Y C AR   G  A+
Sbjct: 542 PVAGYPIEEIHWERGGRELPDDIRQRVQPDGSLTISPVQKNSDSGVYTCWARNKQGHSAR 601

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
            S E              VT I                       VPP IE FAF  +GL
Sbjct: 602 RSGE--------------VTVI-----------------------VPPSIEPFAFQ-EGL 623

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG RTR +CGV+ GDPPL + WLKDG PL      NV+ LD +SSLLSI S+SA HSGE
Sbjct: 624 AEGMRTRTVCGVSRGDPPLKLIWLKDGDPLPDLLGANVTMLDQYSSLLSIPSLSATHSGE 683

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTCVA N AA+ +Y++ LQVK
Sbjct: 684 YTCVAKNPAAEIKYTALLQVK 704

Source: Drosophila melanogaster

Species: Drosophila melanogaster

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	286
FB|FBgn0263219	1918	Dscam4 "Down syndrome cell adh	0.423	0.063	0.5	2e-37
FB|FBgn0261046	2046	Dscam3 "Down syndrome cell adh	0.314	0.043	0.537	8.4e-35
FB|FBgn0033159	2037	Dscam "Down syndrome cell adhe	0.311	0.043	0.483	2.6e-28
UNIPROTKB|F1NY98	1994	DSCAM "Uncharacterized protein	0.391	0.056	0.382	1.1e-23
UNIPROTKB|F1MKB9	1859	DSCAM "Uncharacterized protein	0.391	0.060	0.382	1.1e-22
UNIPROTKB|F1SGT7	1656	F1SGT7 "Uncharacterized protei	0.391	0.067	0.373	4.8e-22
UNIPROTKB|O60469	2012	DSCAM "Down syndrome cell adhe	0.391	0.055	0.373	9.5e-22
ZFIN|ZDB-GENE-050310-7	2024	dscama "Down syndrome cell adh	0.304	0.042	0.420	1e-21
MGI|MGI:1196281	2013	Dscam "Down syndrome cell adhe	0.391	0.055	0.365	1.5e-21
RGD|619992	2013	Dscam "Down syndrome cell adhe	0.391	0.055	0.365	1.5e-21

FB|FBgn0263219 Dscam4 "Down syndrome cell adhesion molecule 4" [Drosophila melanogaster (taxid:7227)]

 Score = 307 (113.1 bits), Expect = 2.0e-37, Sum P(2) = 2.0e-37
 Identities = 61/122 (50%), Positives = 81/122 (66%)

Query:     3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
             P L Y F EQTLQPGP VSLKC+A+GNP P   W+LDGF +P ++RF++GQ+V+ H DVI
Sbjct:   422 PELLYWFSEQTLQPGPTVSLKCVATGNPLPQFTWSLDGFPIPDSSRFLVGQYVTIHDDVI 481

Query:    63 SHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
             SHVNIS+V  EDGGEY C A+N  G    +      Y + + ++  +I G + S  +V  
Sbjct:   482 SHVNISNVKEEDGGEYTCTAQNAIGKVSHSA-KVNIYGLPYIREMPKITGISGSDLIVKC 540

Query:   123 PV 124
             PV
Sbjct:   541 PV 542

GO:0005887 "integral to plasma membrane" evidence=ISM

GO:0007155 "cell adhesion" evidence=ISS

GO:0042802 "identical protein binding" evidence=ISS

FB|FBgn0261046 Dscam3 "Down syndrome cell adhesion molecule 3" [Drosophila melanogaster (taxid:7227)]

 Score = 260 (96.6 bits), Expect = 8.4e-35, Sum P(2) = 8.4e-35
 Identities = 50/93 (53%), Positives = 63/93 (67%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG---FELPTNNRFVIGQFVSG 57
             T P L Y+FIEQ ++PGP +SLKC ASG+P P   W LD     ++  ++RF IGQFV  
Sbjct:   437 TVPELIYTFIEQNVRPGPLISLKCSASGSPPPQFAWLLDSQPIMDVSLHHRFAIGQFVDM 496

Query:    58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
              GDVISH+NISHV  +DGG Y CVA N  G+ +
Sbjct:   497 SGDVISHLNISHVRPDDGGLYKCVASNSMGSVQ 529

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

GO:0007156 "homophilic cell adhesion" evidence=IC

GO:0042802 "identical protein binding" evidence=IPI

GO:0005887 "integral to plasma membrane" evidence=ISM

FB|FBgn0033159 Dscam "Down syndrome cell adhesion molecule" [Drosophila melanogaster (taxid:7227)]

 Score = 270 (100.1 bits), Expect = 2.6e-28, Sum P(2) = 2.6e-28
 Identities = 43/89 (48%), Positives = 68/89 (76%)

Query:     2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             PP++  +F E+T++PGP+V LKC+A GNPTP+I W LDG ++  N+R+ +GQ+V+ +GDV
Sbjct:   429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query:    62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
             +S++NI+ V   DGG Y C+A+++ G  E
Sbjct:   489 VSYLNITSVHANDGGLYKCIAKSKVGVAE 517

GO:0005887 "integral to plasma membrane" evidence=ISM;ISS

GO:0007411 "axon guidance" evidence=IGI;IMP;TAS

GO:0008046 "axon guidance receptor activity" evidence=IMP;NAS

GO:0007422 "peripheral nervous system development" evidence=IMP

GO:0016319 "mushroom body development" evidence=IMP

GO:0007413 "axonal fasciculation" evidence=IMP

GO:0006909 "phagocytosis" evidence=IMP

GO:0051635 "bacterial cell surface binding" evidence=IDA

GO:0048666 "neuron development" evidence=IMP

GO:0030424 "axon" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=IMP;IDA

GO:0043025 "neuronal cell body" evidence=IDA

GO:0030425 "dendrite" evidence=IDA

GO:0042802 "identical protein binding" evidence=IPI

GO:0021551 "central nervous system morphogenesis" evidence=IMP

GO:0048846 "axon extension involved in axon guidance" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IPI

UNIPROTKB|F1NY98 DSCAM "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 187 (70.9 bits), Expect = 1.1e-23, Sum P(2) = 1.1e-23
 Identities = 44/115 (38%), Positives = 60/115 (52%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + PG  VSL C   G P P I WTLD   +  +    I Q ++  G+
Sbjct:   392 TPKIIS-AFSEKVVSPGEPVSLMCNVKGTPLPTITWTLDEDPIVKDGSHRISQIITSEGN 450

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS+  V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   451 VVSYLNISNTQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 505

GO:0005886 "plasma membrane" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0070593 "dendrite self-avoidance" evidence=IEA

UNIPROTKB|F1MKB9 DSCAM "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 181 (68.8 bits), Expect = 1.1e-22, Sum P(2) = 1.1e-22
 Identities = 44/115 (38%), Positives = 58/115 (50%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + P  AVSL C   G P P I WTLD   +       I Q ++  G+
Sbjct:   242 TPKIIS-AFSEKVVSPAEAVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGN 300

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS   V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   301 VVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 355

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|F1SGT7 F1SGT7 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 176 (67.0 bits), Expect = 4.8e-22, Sum P(2) = 4.8e-22
 Identities = 43/115 (37%), Positives = 57/115 (49%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + P   VSL C   G P P I WTLD   +       I Q ++  G+
Sbjct:   158 TPKIIS-AFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGN 216

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS   V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   217 VVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 271

GO:0070593 "dendrite self-avoidance" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0042327 "positive regulation of phosphorylation" evidence=IEA

GO:0030426 "growth cone" evidence=IEA

GO:0030424 "axon" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

UNIPROTKB|O60469 DSCAM "Down syndrome cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 176 (67.0 bits), Expect = 9.5e-22, Sum P(2) = 9.5e-22
 Identities = 43/115 (37%), Positives = 57/115 (49%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + P   VSL C   G P P I WTLD   +       I Q ++  G+
Sbjct:   406 TPKIIS-AFSEKVVSPAEPVSLMCNVKGTPLPTITWTLDDDPILKGGSHRISQMITSEGN 464

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS   V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   465 VVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 519

GO:0007155 "cell adhesion" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IEA

GO:0048813 "dendrite morphogenesis" evidence=IEA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IEA

GO:0005576 "extracellular region" evidence=IEA

GO:0005515 "protein binding" evidence=IPI

GO:0042327 "positive regulation of phosphorylation" evidence=IDA

GO:0007162 "negative regulation of cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS;TAS

GO:0030426 "growth cone" evidence=ISS

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=IDA

GO:0070593 "dendrite self-avoidance" evidence=ISS

GO:0030424 "axon" evidence=ISS

GO:0016020 "membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0007399 "nervous system development" evidence=TAS

ZFIN|ZDB-GENE-050310-7 dscama "Down syndrome cell adhesion molecule a" [Danio rerio (taxid:7955)]

 Score = 180 (68.4 bits), Expect = 1.0e-21, Sum P(2) = 1.0e-21
 Identities = 37/88 (42%), Positives = 51/88 (57%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP IL+ +F E+ + P   VSL C   G P P I WTLD   +  ++R  I   ++  G+
Sbjct:   406 TPKILS-AFSEKVVGPNDFVSLTCHVKGTPQPAITWTLDDEVVAKDSRHRIVHSITAEGN 464

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGT 88
             V+S++NISH+ V D G Y C   N AGT
Sbjct:   465 VVSYLNISHIQVRDSGVYRCTCNNSAGT 492

GO:0005887 "integral to plasma membrane" evidence=IDA

GO:0042074 "cell migration involved in gastrulation" evidence=IMP

MGI|MGI:1196281 Dscam "Down syndrome cell adhesion molecule" [Mus musculus (taxid:10090)]

 Score = 174 (66.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 42/115 (36%), Positives = 58/115 (50%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + P   VSL C   G P P + WTLD   +   +   I Q ++  G+
Sbjct:   406 TPKIIS-AFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGN 464

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS   V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   465 VVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 519

GO:0005515 "protein binding" evidence=IPI

GO:0005886 "plasma membrane" evidence=IDA

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=IMP

GO:0007399 "nervous system development" evidence=IEA

GO:0007626 "locomotory behavior" evidence=IMP

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=IDA

GO:0030426 "growth cone" evidence=IDA

GO:0042327 "positive regulation of phosphorylation" evidence=ISO

GO:0048813 "dendrite morphogenesis" evidence=IMP

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IDA

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=IMP

GO:0070593 "dendrite self-avoidance" evidence=IMP

RGD|619992 Dscam "Down syndrome cell adhesion molecule" [Rattus norvegicus (taxid:10116)]

 Score = 174 (66.3 bits), Expect = 1.5e-21, Sum P(2) = 1.5e-21
 Identities = 42/115 (36%), Positives = 58/115 (50%)

Query:     1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             TP I++ +F E+ + P   VSL C   G P P + WTLD   +   +   I Q ++  G+
Sbjct:   406 TPKIIS-AFSEKVVSPAEPVSLVCNVKGTPLPTVTWTLDDDPILKGSGHRISQMITSEGN 464

Query:    61 VISHVNISHVTVEDGGEYACVAENRAGTC--EITPYDSGPYLIAWFKDGRQIPGR 113
             V+S++NIS   V DGG Y C A N AG    +      GP  I   K+   I GR
Sbjct:   465 VVSYLNISSSQVRDGGVYRCTANNSAGVVLYQARINVRGPASIRPMKNITAIAGR 519

GO:0005886 "plasma membrane" evidence=ISO;ISS

GO:0007155 "cell adhesion" evidence=IEA

GO:0007162 "negative regulation of cell adhesion" evidence=ISO;ISS

GO:0007626 "locomotory behavior" evidence=ISO

GO:0016021 "integral to membrane" evidence=IEA

GO:0030424 "axon" evidence=ISO;ISS

GO:0030426 "growth cone" evidence=ISO;ISS

GO:0042327 "positive regulation of phosphorylation" evidence=ISO;ISS

GO:0048813 "dendrite morphogenesis" evidence=ISO

GO:0048842 "positive regulation of axon extension involved in axon guidance" evidence=ISO;IMP

GO:0060060 "post-embryonic retina morphogenesis in camera-type eye" evidence=ISO

GO:0070593 "dendrite self-avoidance" evidence=ISO;ISS

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	286
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	2e-15
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	3e-14
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	3e-13
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-12
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	5e-12
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-11
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	6e-11
cd00096	74	cd00096, Ig, Immunoglobulin domain	3e-10
cd05729	85	cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)	5e-10
smart00410	85	smart00410, IG_like, Immunoglobulin like	6e-10
smart00409	85	smart00409, IG, Immunoglobulin	6e-10
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	6e-09
smart00410	85	smart00410, IG_like, Immunoglobulin like	8e-09
smart00409	85	smart00409, IG, Immunoglobulin	8e-09
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	9e-09
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	2e-08
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	2e-08
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	1e-07
cd05750	75	cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-li	2e-07
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	5e-07
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	6e-07
cd05731	71	cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig	1e-06
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	1e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	2e-06
cd05869	97	cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-lik	2e-06
cd05856	82	cd05856, Ig2_FGFRL1-like, Second immunoglobulin (I	3e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-06
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	3e-06
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	4e-06
pfam00047	62	pfam00047, ig, Immunoglobulin domain	5e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	5e-06
cd04972	90	cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobul	5e-06
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	5e-06
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	5e-06
cd04975	101	cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)	6e-06
cd05859	101	cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (I	6e-06
cd05732	96	cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig	6e-06
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	7e-06
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	7e-06
cd05851	88	cd05851, Ig3_Contactin-1, Third Ig domain of conta	7e-06
cd05891	92	cd05891, Ig_M-protein_C, C-terminal immunoglobulin	8e-06
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	8e-06
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	1e-05
cd05857	85	cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like	1e-05
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	1e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	1e-05
cd05736	76	cd05736, Ig2_Follistatin_like, Second immunoglobul	2e-05
cd05725	69	cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like	2e-05
cd05728	85	cd05728, Ig4_Contactin-2-like, Fourth Ig domain of	3e-05
cd00096	74	cd00096, Ig, Immunoglobulin domain	4e-05
smart00410	85	smart00410, IG_like, Immunoglobulin like	5e-05
smart00409	85	smart00409, IG, Immunoglobulin	5e-05
cd05763	75	cd05763, Ig_1, Subgroup of the immunoglobulin (Ig)	5e-05
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	7e-05
cd05738	74	cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobu	1e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	1e-04
cd04973	79	cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like	2e-04
cd05726	90	cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like	2e-04
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	2e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	3e-04
cd04967	91	cd04967, Ig1_Contactin, First Ig domain of contact	3e-04
cd04976	71	cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-lik	3e-04
cd04971	81	cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobuli	3e-04
cd05863	67	cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-l	3e-04
cd05747	92	cd05747, Ig5_Titin_like, M5, fifth immunoglobulin	4e-04
cd05848	94	cd05848, Ig1_Contactin-5, First Ig domain of conta	5e-04
cd05754	85	cd05754, Ig3_Perlecan_like, Third immunoglobulin (	6e-04
cd05895	76	cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-	6e-04
cd05870	98	cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-lik	6e-04
cd05862	86	cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like	8e-04
cd05876	71	cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-lik	9e-04
pfam13927	74	pfam13927, Ig_3, Immunoglobulin domain	0.001
cd05737	92	cd05737, Ig_Myomesin_like_C, C-temrinal immunoglob	0.001
cd05746	69	cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (I	0.001
cd05743	78	cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-	0.001
cd04969	73	cd04969, Ig5_Contactin_like, Fifth Ig domain of co	0.001
cd05742	84	cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)	0.001
cd05748	74	cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like d	0.002
cd04978	76	cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin	0.002
cd05739	69	cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobul	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.003
cd05760	77	cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like	0.004
cd05757	92	cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)	0.004
cd05773	109	cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-	0.004

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 68.6 bits (168), Expect = 2e-15
 Identities = 33/72 (45%), Positives = 40/72 (55%), Gaps = 9/72 (12%)

Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
           G +V+L C A GNP P+I W  DG  LP +NRFV            S + I  V++ED 
Sbjct: 1  EGQSVTLTCPAEGNPVPNITWLKDGKPLPESNRFVASG---------STLTIKSVSLEDS 51

Query: 76 GEYACVAENRAG 87
          G Y CVAEN AG
Sbjct: 52 GLYTCVAENSAG 63

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 66.5 bits (163), Expect = 3e-14
 Identities = 25/81 (30%), Positives = 39/81 (48%), Gaps = 5/81 (6%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +Q G +    C  +G+P P + W  DG  L +++RF +             + IS+V 
Sbjct: 10 VEVQEGESARFTCTVTGDPDPTVSWFKDGQPLRSSDRFKVTYE-----GGTYTLTISNVQ 64

Query: 72 VEDGGEYACVAENRAGTCEIT 92
           +D G+Y CVA N AG  E +
Sbjct: 65 PDDEGKYTCVATNSAGEAEAS 85

Length = 90

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 26/76 (34%), Positives = 34/76 (44%), Gaps = 4/76 (5%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G  V LKC ASGNP P I W  DG      +R    +       +I    +  V   D G
Sbjct: 9  GSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLI----LESVVPSDSG 64

Query: 77 EYACVAENRAGTCEIT 92
          +Y C+ EN+ G+   T
Sbjct: 65 KYTCIVENKYGSINHT 80

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 60.6 bits (146), Expect = 3e-12
 Identities = 30/73 (41%), Positives = 40/73 (54%), Gaps = 1/73 (1%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V+L C+ASG P P I W  +G  LP ++     +   G     S + IS+VT+ED G Y 
Sbjct: 1  VTLTCLASGPPPPTITWLKNGKPLP-SSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYT 59

Query: 80 CVAENRAGTCEIT 92
          CVA N AGT   +
Sbjct: 60 CVASNSAGTVSAS 72

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 60.3 bits (147), Expect = 5e-12
 Identities = 32/79 (40%), Positives = 45/79 (56%), Gaps = 2/79 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG   R  C VT GDP  T+ W KDG+PL       V+      +L +I++V     G+Y
Sbjct: 14  EGESARFTCTVT-GDPDPTVSWFKDGQPLRSSDRFKVTYEGGTYTL-TISNVQPDDEGKY 71

Query: 267 TCVASNTAAQARYSSKLQV 285
           TCVA+N+A +A  S++L V
Sbjct: 72  TCVATNSAGEAEASAELTV 90

Length = 90

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 56.6 bits (137), Expect = 6e-11
 Identities = 29/66 (43%), Positives = 32/66 (48%), Gaps = 6/66 (9%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG    + C    G+P   I WLKDGKPL        S      S L+I SVS   SG Y
Sbjct: 1   EGQSVTLTCPAE-GNPVPNITWLKDGKPLPESNRFVASG-----STLTIKSVSLEDSGLY 54

Query: 267 TCVASN 272
           TCVA N
Sbjct: 55  TCVAEN 60

Length = 63

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 57.0 bits (138), Expect = 6e-11
 Identities = 27/67 (40%), Positives = 34/67 (50%), Gaps = 8/67 (11%)

Query: 22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV 81
          L+CIA G PTP+I W   G ELP  +R     F          + I +V+ ED GEY C 
Sbjct: 3  LECIAEGLPTPEISWIKIGGELP-ADRTKFENFNKT-------LKIDNVSEEDDGEYRCT 54

Query: 82 AENRAGT 88
          A N  G+
Sbjct: 55 ASNSLGS 61

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 55.2 bits (132), Expect = 3e-10
 Identities = 29/66 (43%), Positives = 37/66 (56%), Gaps = 4/66 (6%)

Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF---SSLLSINSVSAAHSGEYTC 268
            + C  + G PP TI WLK+GKPL       V         SS L+I++V+   SG YTC
Sbjct: 2   TLTCLAS-GPPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTC 60

Query: 269 VASNTA 274
           VASN+A
Sbjct: 61  VASNSA 66

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143206 cd05729, Ig2_FGFR_like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 26/81 (32%), Positives = 40/81 (49%), Gaps = 1/81 (1%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +P G+  R+ C  + G+P  TI WLKDGKP      +    +      L + SV  + SG
Sbjct: 6   VPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSG 64

Query: 265 EYTCVASNTAAQARYSSKLQV 285
           +YTC+  N      ++ K+ V
Sbjct: 65  KYTCIVENKYGSINHTYKVDV 85

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. This group also contains fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T++ G +V+L C ASG+P P++ W   G +L   +               S + IS+VT
Sbjct: 4  VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----TSTLTISNVT 59

Query: 72 VEDGGEYACVAENRAGT 88
           ED G Y C A N +G+
Sbjct: 60 PEDSGTYTCAATNSSGS 76

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 54.4 bits (131), Expect = 6e-10
 Identities = 26/77 (33%), Positives = 39/77 (50%), Gaps = 4/77 (5%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T++ G +V+L C ASG+P P++ W   G +L   +               S + IS+VT
Sbjct: 4  VTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----TSTLTISNVT 59

Query: 72 VEDGGEYACVAENRAGT 88
           ED G Y C A N +G+
Sbjct: 60 PEDSGTYTCAATNSSGS 76

Length = 85

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 51.8 bits (124), Expect = 6e-09
 Identities = 27/71 (38%), Positives = 36/71 (50%), Gaps = 7/71 (9%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G +V LKC+ASGNP PDI W  D   L       IG+           +++ ++  ED G
Sbjct: 9  GSSVRLKCVASGNPRPDITWLKDNKPLTPTE---IGESRKKKWT----LSLKNLKPEDSG 61

Query: 77 EYACVAENRAG 87
          +Y C   NRAG
Sbjct: 62 KYTCHVSNRAG 72

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           EG    + C  + G PP  + W K G  L   S RF V+ S   S    L+I++V+   S
Sbjct: 8   EGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST---LTISNVTPEDS 63

Query: 264 GEYTCVASNTAAQARYSSKLQV 285
           G YTC A+N++  A   + L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.4 bits (123), Expect = 8e-09
 Identities = 29/82 (35%), Positives = 41/82 (50%), Gaps = 7/82 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           EG    + C  + G PP  + W K G  L   S RF V+ S   S    L+I++V+   S
Sbjct: 8   EGESVTLSCEAS-GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTST---LTISNVTPEDS 63

Query: 264 GEYTCVASNTAAQARYSSKLQV 285
           G YTC A+N++  A   + L V
Sbjct: 64  GTYTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 51.4 bits (123), Expect = 9e-09
 Identities = 26/65 (40%), Positives = 34/65 (52%), Gaps = 9/65 (13%)

Query: 24 CIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE 83
          C ASGNP P   W  +G  L + NR      V   GD+     I+ +++ D G Y CVAE
Sbjct: 21 CKASGNPRPAYRWLKNGQPLASENRI----EVEA-GDLR----ITKLSLSDSGMYQCVAE 71

Query: 84 NRAGT 88
          N+ GT
Sbjct: 72 NKHGT 76

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 50.2 bits (120), Expect = 2e-08
 Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 3/68 (4%)

Query: 21 SLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
           LKC A S  P+    W  DG EL   N+    +  +   +  S + I+   + D GEY 
Sbjct: 2  VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKN--SELQINKAKLADSGEYT 59

Query: 80 CVAENRAG 87
          CV EN  G
Sbjct: 60 CVVENILG 67

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 50.1 bits (119), Expect = 2e-08
 Identities = 23/61 (37%), Positives = 31/61 (50%), Gaps = 5/61 (8%)

Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
            + C    G PP TI W ++G             L S  S L+++SV++  SG YTCVAS
Sbjct: 19  TLTCSAEGGPPPPTISWYRNGSISG-----GSGGLGSSGSTLTLSSVTSEDSGTYTCVAS 73

Query: 272 N 272
           N
Sbjct: 74  N 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 47.8 bits (114), Expect = 1e-07
 Identities = 20/58 (34%), Positives = 26/58 (44%), Gaps = 6/58 (10%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDG 141
           TC           I W KDG+ +P       S ++L I  V  ED G+Y C+A  S G
Sbjct: 8   TCPAEGNPV--PNITWLKDGKPLPESNRFVASGSTLTIKSVSLEDSGLYTCVAENSAG 63

Length = 63

>gnl|CDD|143227 cd05750, Ig_Pro_neuregulin, Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 23/60 (38%), Positives = 28/60 (46%), Gaps = 2/60 (3%)

Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASN 272
           C  T   P L  +W KDGK L+ +       +     +S L IN    A SGEYTCV  N
Sbjct: 5   CEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVEN 64

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. There are many NRG-1 isoforms, which arise from the alternative splicing of mRNA. Less is known of the functions of the other NRGs. NRG-2 and -3 are expressed predominantly in the nervous system. NRG-2 is expressed by motor neurons and terminal Schwann cells, and is concentrated near synaptic sites and may be a signal that regulates synaptic differentiation. NRG-4 has been shown to direct pancreatic islet cell development towards the delta-cell lineage. Length = 75

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 46.1 bits (109), Expect = 5e-07
 Identities = 25/78 (32%), Positives = 33/78 (42%), Gaps = 8/78 (10%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G  V   C A G P P I WT  G +L  + R ++    SG       + IS V + D G
Sbjct: 2  GQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLV--LSSG------TLRISRVALHDQG 53

Query: 77 EYACVAENRAGTCEITPY 94
          +Y C A N  G+      
Sbjct: 54 QYECQAVNIVGSQRTVAQ 71

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 46.4 bits (110), Expect = 6e-07
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVI----GQFVSGHGDVISHVNIS 68
          T+  G  ++L C   G+P P++ W  +   L  ++ + +    G++ S        + I 
Sbjct: 12 TIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS--------LTIK 63

Query: 69 HVTVEDGGEYACVAENRAG 87
           V+ ED G+Y  V +N+ G
Sbjct: 64 GVSSEDSGKYGIVVKNKYG 82

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143208 cd05731, Ig3_L1-CAM_like, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 45.1 bits (107), Expect = 1e-06
 Identities = 22/67 (32%), Positives = 33/67 (49%), Gaps = 4/67 (5%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
           G P   I W+K G  L           ++F+  L I++VS    GEY C ASN+   AR+
Sbjct: 9   GLPTPEISWIKIGGELPADRTK----FENFNKTLKIDNVSEEDDGEYRCTASNSLGSARH 64

Query: 280 SSKLQVK 286
           +  + V+
Sbjct: 65  TISVTVE 71

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin. Length = 71

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 44.9 bits (106), Expect = 1e-06
 Identities = 24/68 (35%), Positives = 33/68 (48%), Gaps = 8/68 (11%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V + C A G+P P I W  DG ++  + +F     +S  G    ++ I  V V D G Y 
Sbjct: 1  VQIPCSAQGDPEPTITWNKDGVQVTESGKF----HISPEG----YLAIRDVGVADQGRYE 52

Query: 80 CVAENRAG 87
          CVA N  G
Sbjct: 53 CVARNTIG 60

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 44.1 bits (104), Expect = 2e-06
 Identities = 21/63 (33%), Positives = 31/63 (49%), Gaps = 1/63 (1%)

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           G+   + C V  G P + + W K+GK L     V   +    S  L+I++V+   SG YT
Sbjct: 1   GSSVTLTCSV-SGPPQVDVTWFKEGKGLEESTTVGTDENRVSSITLTISNVTPEDSGTYT 59

Query: 268 CVA 270
           CV 
Sbjct: 60  CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|143277 cd05869, Ig5_NCAM-1, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 45.0 bits (106), Expect = 2e-06
 Identities = 27/90 (30%), Positives = 42/90 (46%), Gaps = 10/90 (11%)

Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
          P +TY   +  ++    ++L C ASG+P P I W      + +       + + GH  V 
Sbjct: 3  PKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEE-----KTLDGHIVVR 57

Query: 63 SHVNISHVTVE-----DGGEYACVAENRAG 87
          SH  +S +T++     D GEY C A N  G
Sbjct: 58 SHARVSSLTLKYIQYTDAGEYLCTASNTIG 87

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 97

>gnl|CDD|143264 cd05856, Ig2_FGFRL1-like, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 28/80 (35%), Positives = 41/80 (51%), Gaps = 4/80 (5%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P G+  R+ C V  G+P   I WLKD KPL+P     + +       LS+ ++    SG+
Sbjct: 7   PVGSSVRLKC-VASGNPRPDITWLKDNKPLTPT---EIGESRKKKWTLSLKNLKPEDSGK 62

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTC  SN A +   + K+ V
Sbjct: 63  YTCHVSNRAGEINATYKVDV 82

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors. Length = 82

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 44.0 bits (104), Expect = 3e-06
 Identities = 26/82 (31%), Positives = 35/82 (42%), Gaps = 13/82 (15%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           + EG    + C    G+PP    W KDG PLS              +     +VSA  SG
Sbjct: 11  VFEGEDVTLTC-SAPGNPPPNYTWYKDGVPLSSS-----------QNGFFTPNVSAEDSG 58

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
            YTCVASN     + S+ + + 
Sbjct: 59  TYTCVASNGGGG-KTSNPVTLT 79

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 43.8 bits (103), Expect = 3e-06
 Identities = 24/70 (34%), Positives = 36/70 (51%), Gaps = 5/70 (7%)

Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80
          SL+C A G P P + W  +G ++       +    +G     S ++IS+V  ED G Y C
Sbjct: 2  SLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTLIANG-----SELHISNVRYEDTGAYTC 56

Query: 81 VAENRAGTCE 90
          +A+N AG  E
Sbjct: 57 IAKNEAGVDE 66

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 43.3 bits (103), Expect = 4e-06
 Identities = 24/67 (35%), Positives = 33/67 (49%), Gaps = 3/67 (4%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
           G P  T+ W KDGKPL     V +    S +S L I +   + SG+YT    N A +   
Sbjct: 10  GRPTPTVTWSKDGKPLKLSGRVQIETTASSTS-LVIKNAERSDSGKYTLTLKNPAGEK-- 66

Query: 280 SSKLQVK 286
           S+ + VK
Sbjct: 67  SATINVK 73

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|215677 pfam00047, ig, Immunoglobulin domain

 Score = 42.9 bits (101), Expect = 5e-06
 Identities = 20/63 (31%), Positives = 27/63 (42%), Gaps = 4/63 (6%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V+L C  SG P  D+ W  +G  L  +           +      + IS+VT ED G Y 
Sbjct: 4  VTLTCSVSGPPQVDVTWFKEGKGLEESTTVG----TDENRVSSITLTISNVTPEDSGTYT 59

Query: 80 CVA 82
          CV 
Sbjct: 60 CVV 62

Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain. Length = 62

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 43.6 bits (103), Expect = 5e-06
 Identities = 27/86 (31%), Positives = 35/86 (40%), Gaps = 17/86 (19%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P+LT S     +  G  V+L C A GNP P+  W  DG  L ++               
Sbjct: 1  KPVLTPSP--TVVFEGEDVTLTCSAPGNPPPNYTWYKDGVPLSSSQNGFF---------- 48

Query: 62 ISHVNISHVTVEDGGEYACVAENRAG 87
                 +V+ ED G Y CVA N  G
Sbjct: 49 -----TPNVSAEDSGTYTCVASNGGG 69

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143173 cd04972, Ig_TrkABC_d4, Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 43.7 bits (103), Expect = 5e-06
 Identities = 17/75 (22%), Positives = 32/75 (42%), Gaps = 5/75 (6%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
           +  G   +++C A G+P P + W + G  +           +    D+ + + +S++T 
Sbjct: 11 VVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDT----LETTVDIYN-LQLSNITS 65

Query: 73 EDGGEYACVAENRAG 87
          E      C AEN  G
Sbjct: 66 ETQTTVTCTAENPVG 80

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 90

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 43.8 bits (103), Expect = 5e-06
 Identities = 26/80 (32%), Positives = 35/80 (43%), Gaps = 6/80 (7%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
          T   G +V+L C A G P P + WT DG  + +              +  S + I  V  
Sbjct: 14 TANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYS------FNEDGSEMTILDVDK 67

Query: 73 EDGGEYACVAENRAGTCEIT 92
           D  EY C+AEN+AG  E  
Sbjct: 68 LDEAEYTCIAENKAGEQEAE 87

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 43.2 bits (102), Expect = 5e-06
 Identities = 24/71 (33%), Positives = 30/71 (42%), Gaps = 9/71 (12%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V  +C   G+P P + W  +  ELP   R  I    S        + I +VT  D G Y 
Sbjct: 1  VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEILDDKS--------LKIRNVTAGDEGSYT 51

Query: 80 CVAENRAGTCE 90
          C AEN  G  E
Sbjct: 52 CEAENMVGKIE 62

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143176 cd04975, Ig4_SCFR_like, Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

 Score = 43.8 bits (104), Expect = 6e-06
 Identities = 18/69 (26%), Positives = 29/69 (42%), Gaps = 4/69 (5%)

Query: 222 PPLTIRWLKDGKPL--SPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
           PP  I W  D + L       V   +     + S L +  +  + +G YT +ASN+ A  
Sbjct: 32  PPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK 91

Query: 278 RYSSKLQVK 286
             + +L V 
Sbjct: 92  SLTFELYVN 100

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta, binds only to PDGF-B. In mice, PDGFR alpha, and PDGFR beta, are essential for normal development. Length = 101

>gnl|CDD|143267 cd05859, Ig4_PDGFR-alpha, Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 23/71 (32%), Positives = 31/71 (43%), Gaps = 7/71 (9%)

Query: 222 PPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 275
           PP  IRWLKD + L            NV +   + S L +       SG YT +A N  A
Sbjct: 31  PPPQIRWLKDNRTLIENLTEITTSEHNVQET-RYVSKLKLIRAKEEDSGLYTALAQNEDA 89

Query: 276 QARYSSKLQVK 286
              Y+  LQ++
Sbjct: 90  VKSYTFALQIQ 100

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development. Length = 101

>gnl|CDD|143209 cd05732, Ig5_NCAM-1_like, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

 Score = 43.7 bits (103), Expect = 6e-06
 Identities = 25/77 (32%), Positives = 36/77 (46%), Gaps = 2/77 (2%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-VSGHGDVISHVNISHV 70
          QT      ++L C A G+P P+I W          ++ + G+  V GH  V S + +  V
Sbjct: 11 QTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVRGHARV-SSLTLKDV 69

Query: 71 TVEDGGEYACVAENRAG 87
           + D G Y C A NR G
Sbjct: 70 QLTDAGRYDCEASNRIG 86

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Also included in this group is NCAM-2 (also known as OCAM/mamFas II and RNCAM) NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE). Length = 96

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 43.2 bits (102), Expect = 7e-06
 Identities = 29/87 (33%), Positives = 36/87 (41%), Gaps = 11/87 (12%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHGD 60
          P I+     +     G  V+L+C A GNP P I W  +DG    +          S  G 
Sbjct: 1  PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEI-------SMSGA 53

Query: 61 VISHVNISHVTVEDGGEYACVAENRAG 87
          V+   NI     ED G Y C AEN  G
Sbjct: 54 VLKIPNIQF---EDEGTYECEAENIKG 77

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 43.0 bits (101), Expect = 7e-06
 Identities = 22/70 (31%), Positives = 33/70 (47%), Gaps = 10/70 (14%)

Query: 20 VSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
          + L+CIA G PTP++ W  +DG   P           +   +    + + +V   D GEY
Sbjct: 1  LVLECIAEGLPTPEVHWDRIDGPLSPNR---------TKKLNNNKTLQLDNVLESDDGEY 51

Query: 79 ACVAENRAGT 88
           C AEN  G+
Sbjct: 52 VCTAENSEGS 61

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|143259 cd05851, Ig3_Contactin-1, Third Ig domain of contactin-1

 Score = 43.1 bits (101), Expect = 7e-06
 Identities = 28/86 (32%), Positives = 35/86 (40%), Gaps = 9/86 (10%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P  +   F +     G  V+L+C A GNP P I W      +P          +S  G V
Sbjct: 1  PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAE------ISMSGAV 54

Query: 62 ISHVNISHVTVEDGGEYACVAENRAG 87
          +   NI     ED G Y C AEN  G
Sbjct: 55 LKIFNIQP---EDEGTYECEAENIKG 77

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|143299 cd05891, Ig_M-protein_C, C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

 Score = 43.4 bits (102), Expect = 8e-06
 Identities = 20/79 (25%), Positives = 38/79 (48%), Gaps = 12/79 (15%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVI----GQFVSGHGDVISHVNIS 68
          T+  G  ++L C   GNP P++ W  +  ++  +  + +    G++ S        + I 
Sbjct: 12 TIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKLEQGKYAS--------LTIK 63

Query: 69 HVTVEDGGEYACVAENRAG 87
           VT ED G+Y+   +N+ G
Sbjct: 64 GVTSEDSGKYSINVKNKYG 82

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers. Length = 92

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 8e-06
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P     +  C    G+P  T+RWLK+GK       +    + +    L + SV  +  G 
Sbjct: 7   PAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 65

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTCV  N      ++  L V
Sbjct: 66  YTCVVENEYGSINHTYHLDV 85

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 42.4 bits (99), Expect = 1e-05
 Identities = 27/84 (32%), Positives = 36/84 (42%), Gaps = 11/84 (13%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P++T      ++  G  V+L C A G P P  I W  +G     +          G G 
Sbjct: 1  KPVIT-VSPSPSVTSGGGVTLTCSAEGGPPPPTISWYRNGSISGGSG---------GLGS 50

Query: 61 VISHVNISHVTVEDGGEYACVAEN 84
            S + +S VT ED G Y CVA N
Sbjct: 51 SGSTLTLSSVTSEDSGTYTCVASN 74

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143265 cd05857, Ig2_FGFR, Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 23/69 (33%), Positives = 33/69 (47%), Gaps = 4/69 (5%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V  +C A+GNPTP + W  +G E    +R    +  + H  +I    +  V   D G Y 
Sbjct: 12 VKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVVPSDKGNYT 67

Query: 80 CVAENRAGT 88
          CV EN  G+
Sbjct: 68 CVVENEYGS 76

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans. Length = 85

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 42.4 bits (100), Expect = 1e-05
 Identities = 23/75 (30%), Positives = 28/75 (37%), Gaps = 12/75 (16%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGF---ELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
          G    L C A G P P I W L+G    ELP + R  +       G  +   N+      
Sbjct: 1  GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPRRRV------DGGTLILSNVQP---N 51

Query: 74 DGGEYACVAENRAGT 88
          D   Y C A N  G 
Sbjct: 52 DTAVYQCNASNVHGY 66

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 42.0 bits (98), Expect = 1e-05
 Identities = 26/68 (38%), Positives = 34/68 (50%), Gaps = 6/68 (8%)

Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC 80
          ++ C ASGNP P+I W  D   + T +   I Q  SG       + I +    D G+Y C
Sbjct: 2  TMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQLRSG------ALQIENSEESDQGKYEC 55

Query: 81 VAENRAGT 88
          VA N AGT
Sbjct: 56 VATNSAGT 63

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143213 cd05736, Ig2_Follistatin_like, Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

 Score = 41.8 bits (98), Expect = 2e-05
 Identities = 22/67 (32%), Positives = 34/67 (50%), Gaps = 1/67 (1%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
           G P   + WLK+G  ++P+    +  L +  S L I++V    +G YTC+A N A     
Sbjct: 9   GIPLPRLTWLKNGMDITPKLSKQL-TLIANGSELHISNVRYEDTGAYTCIAKNEAGVDED 67

Query: 280 SSKLQVK 286
            S L V+
Sbjct: 68  ISSLFVE 74

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling. Length = 76

>gnl|CDD|143202 cd05725, Ig3_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 41.6 bits (98), Expect = 2e-05
 Identities = 23/66 (34%), Positives = 31/66 (46%), Gaps = 5/66 (7%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
           GDP  T+ W K+   L P+    + D  S    L I +V+A   G YTC A N   +   
Sbjct: 9   GDPVPTVLWRKEDGEL-PKGRAEILDDKS----LKIRNVTAGDEGSYTCEAENMVGKIEA 63

Query: 280 SSKLQV 285
           S+ L V
Sbjct: 64  SASLTV 69

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 69

>gnl|CDD|143205 cd05728, Ig4_Contactin-2-like, Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

 Score = 41.4 bits (97), Expect = 3e-05
 Identities = 31/98 (31%), Positives = 41/98 (41%), Gaps = 14/98 (14%)

Query: 188 WEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 247
           W KV    E           G+  R  C    G+P    RWLK+G+PL+    + V   D
Sbjct: 2   WLKVISDTE--------ADIGSSLRWEC-KASGNPRPAYRWLKNGQPLASENRIEVEAGD 52

Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                L I  +S + SG Y CVA N       S++L V
Sbjct: 53  -----LRITKLSLSDSGMYQCVAENKHGTIYASAELAV 85

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes. Length = 85

>gnl|CDD|143165 cd00096, Ig, Immunoglobulin domain

 Score = 40.9 bits (95), Expect = 4e-05
 Identities = 21/68 (30%), Positives = 30/68 (44%), Gaps = 14/68 (20%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGR------------TSSTSLVINPVGREDRGIYQCI 135
           TC  +     P  I W K+G+ +P              + S++L I+ V  ED G Y C+
Sbjct: 4   TCLASGPP--PPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCV 61

Query: 136 ARRSDGDV 143
           A  S G V
Sbjct: 62  ASNSAGTV 69

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARR 138
           +CE +   S P  + W+K G ++             S+++L I+ V  ED G Y C A  
Sbjct: 15  SCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATN 72

Query: 139 SDGDVAQGSAELQ 151
           S G        L 
Sbjct: 73  SSGSA-SSGTTLT 84

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 40.6 bits (95), Expect = 5e-05
 Identities = 20/73 (27%), Positives = 30/73 (41%), Gaps = 12/73 (16%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARR 138
           +CE +   S P  + W+K G ++             S+++L I+ V  ED G Y C A  
Sbjct: 15  SCEAS--GSPPPEVTWYKQGGKLLAESGRFSVSRSGSTSTLTISNVTPEDSGTYTCAATN 72

Query: 139 SDGDVAQGSAELQ 151
           S G        L 
Sbjct: 73  SSGSA-SSGTTLT 84

Length = 85

>gnl|CDD|143240 cd05763, Ig_1, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 40.7 bits (95), Expect = 5e-05
 Identities = 27/70 (38%), Positives = 35/70 (50%), Gaps = 10/70 (14%)

Query: 22 LKCIASGNPTPDIGWTLDG---FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
          L+C A+G+PTP I W  DG   F      R      V    DV   V+   V +ED G Y
Sbjct: 3  LECAATGHPTPQIAWQKDGGTDFPAARERRM----HVMPEDDVFFIVD---VKIEDTGVY 55

Query: 79 ACVAENRAGT 88
          +C A+N AG+
Sbjct: 56 SCTAQNTAGS 65

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 75

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 40.2 bits (94), Expect = 7e-05
 Identities = 20/68 (29%), Positives = 29/68 (42%), Gaps = 7/68 (10%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +  GA    IC      P  T+ W + G  L    P    D   F+ +L+I +V  + +G
Sbjct: 13  VRPGADVSFICRAKSKSPAYTLVWTRVGGGL----PSRAMD---FNGILTIRNVQLSDAG 65

Query: 265 EYTCVASN 272
            Y C  SN
Sbjct: 66  TYVCTGSN 73

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143215 cd05738, Ig2_RPTP_IIa_LAR_like, Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 39.3 bits (91), Expect = 1e-04
 Identities = 22/75 (29%), Positives = 35/75 (46%), Gaps = 4/75 (5%)

Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 270
             ++C  + G+P   I W KD  P+       +  L S    L I +   +  G+Y CVA
Sbjct: 1   ATMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQLRS--GALQIENSEESDQGKYECVA 57

Query: 271 SNTAAQARYSSKLQV 285
           +N+A   RYS+   +
Sbjct: 58  TNSAG-TRYSAPANL 71

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Length = 74

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 39.6 bits (92), Expect = 1e-04
 Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 6/69 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           EG   R  C V  G+P  T+ W+++G+ +  S R  +  ++   + S   I+ V  +  G
Sbjct: 17  EGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITSTE---YKSTFEISKVQMSDEG 72

Query: 265 EYTCVASNT 273
            YT V  N+
Sbjct: 73  NYTVVVENS 81

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143174 cd04973, Ig1_FGFR, First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

 Score = 39.1 bits (91), Expect = 2e-04
 Identities = 23/74 (31%), Positives = 30/74 (40%), Gaps = 10/74 (13%)

Query: 15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
           PG  + L+C    +    I WT DG +L  NNR  I             V I      D
Sbjct: 7  HPGDLLQLRCRLR-DDVQSINWTKDGVQLGENNRTRI---------TGEEVQIKDAVPRD 56

Query: 75 GGEYACVAENRAGT 88
           G YACV  + +G+
Sbjct: 57 SGLYACVTSSPSGS 70

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs. Length = 79

>gnl|CDD|143203 cd05726, Ig4_Robo, Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 39.2 bits (91), Expect = 2e-04
 Identities = 26/80 (32%), Positives = 38/80 (47%), Gaps = 16/80 (20%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFE--------LPTNNRFVIGQFVSGHGDVISHVNIS 68
          G  V+ +C A+GNP P I W  +G +          +++RF     VS  GD    + I+
Sbjct: 1  GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFS----VSQTGD----LTIT 52

Query: 69 HVTVEDGGEYACVAENRAGT 88
          +V   D G Y C   N AG+
Sbjct: 53 NVQRSDVGYYICQTLNVAGS 72

Ig4_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 90

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 38.6 bits (90), Expect = 2e-04
 Identities = 24/72 (33%), Positives = 37/72 (51%), Gaps = 9/72 (12%)

Query: 17 GPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
          G   +L+C A G+P P I W   DG  +  ++R ++  + +G  D      I   TV+D 
Sbjct: 1  GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLV--YDNGTLD------ILITTVKDT 52

Query: 76 GEYACVAENRAG 87
          G + C+A N AG
Sbjct: 53 GSFTCIASNAAG 64

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.8 bits (90), Expect = 3e-04
 Identities = 22/69 (31%), Positives = 33/69 (47%), Gaps = 8/69 (11%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS---SLLSINSVSAAHSGEYTCVASNTAAQ 276
           G P  T+ W KDG+P+      +  +  SF+   S ++I  V      EYTC+A N A +
Sbjct: 29  GFPEPTMTWTKDGEPIE-----SGEEKYSFNEDGSEMTILDVDKLDEAEYTCIAENKAGE 83

Query: 277 ARYSSKLQV 285
                 L+V
Sbjct: 84  QEAEIHLKV 92

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143168 cd04967, Ig1_Contactin, First Ig domain of contactin

 Score = 39.0 bits (91), Expect = 3e-04
 Identities = 25/71 (35%), Positives = 37/71 (52%), Gaps = 10/71 (14%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE 77
          VSL C A G+P P   W ++G E+    ++R+     V G+  VIS+ +      +D G 
Sbjct: 22 VSLNCRARGSPPPTYRWLMNGTEIDDEPDSRY---SLVGGNL-VISNPS----KAKDAGR 73

Query: 78 YACVAENRAGT 88
          Y C+A N  GT
Sbjct: 74 YQCLASNIVGT 84

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal activity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 91

>gnl|CDD|143177 cd04976, Ig2_VEGFR, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 19/54 (35%), Positives = 28/54 (51%), Gaps = 5/54 (9%)

Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA 275
           PP  I+W K+GK +S +   N +     S  L+I  V+   +G YT V +N  A
Sbjct: 11  PPPEIQWYKNGKLISEK---NRTKKSGHS--LTIKDVTEEDAGNYTVVLTNKQA 59

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 71

>gnl|CDD|143172 cd04971, Ig_TrKABC_d5, Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 18/73 (24%), Positives = 29/73 (39%), Gaps = 6/73 (8%)

Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPR------FPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           I     G+P  T+ W  +G  L+            V+    +   L  ++ +  ++G YT
Sbjct: 3   IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYT 62

Query: 268 CVASNTAAQARYS 280
            VASN   Q   S
Sbjct: 63  LVASNEYGQDSKS 75

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor found in all major NGF targets, including the sympathetic, trigeminal, and dorsal root ganglia, cholinergic neurons of the basal forebrain and the striatum. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems. The TrkC gene is expressed throughout the mammalian nervous system. Length = 81

>gnl|CDD|143271 cd05863, Ig2_VEGFR-3, Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

 Score = 38.0 bits (88), Expect = 3e-04
 Identities = 20/64 (31%), Positives = 28/64 (43%), Gaps = 9/64 (14%)

Query: 222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 281
           PP   +W KDGK +S +              L I  V+ A +G YT V  N+AA      
Sbjct: 11  PPPEFQWYKDGKLISGKHS---------QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRI 61

Query: 282 KLQV 285
            L++
Sbjct: 62  SLEL 65

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth. Length = 67

>gnl|CDD|143224 cd05747, Ig5_Titin_like, M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

 Score = 38.5 bits (89), Expect = 4e-04
 Identities = 22/78 (28%), Positives = 31/78 (39%), Gaps = 5/78 (6%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
          T+  G +    C   G P P + W  +G  + ++ R  I        +  S   IS V +
Sbjct: 14 TVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS-----TEYKSTFEISKVQM 68

Query: 73 EDGGEYACVAENRAGTCE 90
           D G Y  V EN  G  E
Sbjct: 69 SDEGNYTVVVENSEGKQE 86

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Length = 92

>gnl|CDD|143256 cd05848, Ig1_Contactin-5, First Ig domain of contactin-5

 Score = 38.4 bits (89), Expect = 5e-04
 Identities = 24/69 (34%), Positives = 35/69 (50%), Gaps = 6/69 (8%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
          V L C A GNP P   W  +G E+ T + +   ++    G++I   N S   V+D G Y 
Sbjct: 22 VILNCEARGNPVPTYRWLRNGTEIDTESDY---RYSLIDGNLIIS-NPSE--VKDSGRYQ 75

Query: 80 CVAENRAGT 88
          C+A N  G+
Sbjct: 76 CLATNSIGS 84

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord. Length = 94

>gnl|CDD|143231 cd05754, Ig3_Perlecan_like, Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

 Score = 37.5 bits (87), Expect = 6e-04
 Identities = 24/80 (30%), Positives = 32/80 (40%), Gaps = 12/80 (15%)

Query: 12 QTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
          Q ++PG  VS  C A S +P   + WT  G  LP+              D    + I +V
Sbjct: 11 QEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRAM-----------DFNGILTIRNV 59

Query: 71 TVEDGGEYACVAENRAGTCE 90
           + D G Y C   N   T E
Sbjct: 60 QLSDAGTYVCTGSNMLDTDE 79

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2. Length = 85

>gnl|CDD|143303 cd05895, Ig_Pro_neuregulin-1, Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

 Score = 37.7 bits (87), Expect = 6e-04
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 3/61 (4%)

Query: 215 CGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVAS 271
           C      P L  +W K+GK +  +  P N   +     SS L I+  S A +GEY C+ S
Sbjct: 5   CETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVS 64

Query: 272 N 272
           +
Sbjct: 65  S 65

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell survival. Length = 76

>gnl|CDD|143278 cd05870, Ig5_NCAM-2, Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 27/80 (33%), Positives = 38/80 (47%), Gaps = 6/80 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVNI 67
          +T     A +L C A G P P+I W    DG      ++   G+  V G HG+  S ++I
Sbjct: 11 ETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVKGQHGE--SSLHI 68

Query: 68 SHVTVEDGGEYACVAENRAG 87
            V + D G Y C A +R G
Sbjct: 69 KDVKLSDSGRYDCEAASRIG 88

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule. Length = 98

>gnl|CDD|143270 cd05862, Ig1_VEGFR, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

 Score = 37.5 bits (87), Expect = 8e-04
 Identities = 14/38 (36%), Positives = 22/38 (57%)

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            SS L+I +V+ +  G YTC AS+    A+ S+ + V 
Sbjct: 48  LSSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIVH 85

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. Length = 86

>gnl|CDD|143284 cd05876, Ig3_L1-CAM, Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

 Score = 36.8 bits (85), Expect = 9e-04
 Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 4/70 (5%)

Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
           +  G P   + W +   PLSP    N +   + +  L +++V  +  GEY C A N+   
Sbjct: 6   IAEGLPTPEVHWDRIDGPLSP----NRTKKLNNNKTLQLDNVLESDDGEYVCTAENSEGS 61

Query: 277 ARYSSKLQVK 286
           AR+   + V+
Sbjct: 62  ARHHYTVTVE 71

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM. Length = 71

>gnl|CDD|222457 pfam13927, Ig_3, Immunoglobulin domain

 Score = 36.6 bits (84), Expect = 0.001
 Identities = 16/54 (29%), Positives = 26/54 (48%), Gaps = 5/54 (9%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIAR 137
           TC        P  I+W+++G    G     +S ++L ++ V  ED G Y C+A 
Sbjct: 21  TCSAEGG-PPPPTISWYRNGSISGGSGGLGSSGSTLTLSSVTSEDSGTYTCVAS 73

This family contains immunoglobulin-like domains. Length = 74

>gnl|CDD|143214 cd05737, Ig_Myomesin_like_C, C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

 Score = 37.1 bits (86), Expect = 0.001
 Identities = 26/76 (34%), Positives = 37/76 (48%), Gaps = 9/76 (11%)

Query: 204 GLP------EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSIN 256
           GLP      EG    + C V  GDP   + WLK+ + L+     NV  +   ++S L+I 
Sbjct: 6   GLPDVVTIMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYAS-LTIK 63

Query: 257 SVSAAHSGEYTCVASN 272
            VS+  SG+Y  V  N
Sbjct: 64  GVSSEDSGKYGIVVKN 79

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity. Length = 92

>gnl|CDD|143223 cd05746, Ig4_Peroxidasin, Fourth immunoglobulin (Ig)-like domain of peroxidasin

 Score = 36.0 bits (83), Expect = 0.001
 Identities = 24/64 (37%), Positives = 29/64 (45%), Gaps = 4/64 (6%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
           GDP  TI W KDG  ++     ++S        L+I  V  A  G Y CVA NT   A  
Sbjct: 9   GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASV 64

Query: 280 SSKL 283
           S  L
Sbjct: 65  SMVL 68

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self. Length = 69

>gnl|CDD|143220 cd05743, Ig_Perlecan_D2_like, Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

 Score = 36.7 bits (85), Expect = 0.001
 Identities = 26/77 (33%), Positives = 33/77 (42%), Gaps = 5/77 (6%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G  V   C+A+G PTP I W L+   +P + R  I     G+G +     I  V   D G
Sbjct: 1  GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLT----IRDVKESDQG 55

Query: 77 EYACVAENRAGTCEITP 93
           Y C A N  G     P
Sbjct: 56 AYTCEAINTRGMVFGIP 72

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities. Length = 78

>gnl|CDD|143170 cd04969, Ig5_Contactin_like, Fifth Ig domain of contactin

 Score = 36.3 bits (84), Expect = 0.001
 Identities = 25/78 (32%), Positives = 34/78 (43%), Gaps = 8/78 (10%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G  V ++C     P P I W+  G EL TN+  +    +   G +     I +VT  D G
Sbjct: 1  GGDVIIECKPKAAPKPTISWS-KGTELLTNSSRI---CIWPDGSLE----ILNVTKSDEG 52

Query: 77 EYACVAENRAGTCEITPY 94
          +Y C AEN  G    T  
Sbjct: 53 KYTCFAENFFGKANSTGS 70

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 73

>gnl|CDD|143219 cd05742, Ig1_VEGFR_like, First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

 Score = 36.6 bits (85), Expect = 0.001
 Identities = 13/38 (34%), Positives = 21/38 (55%)

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            SS L+I + +   SG YTC AS+     + S+K+ + 
Sbjct: 47  LSSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNIH 84

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells. VEGFR-3 has been shown to be involved in tumor angiogenesis and growth. This group also contains alpha-type platelet-derived growth factor receptor precursor (PDGFR)-alpha (CD140a), and PDGFR-beta (CD140b). PDGFRs alpha and beta have an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion that has protein tyrosine kinase activity. Length = 84

>gnl|CDD|143225 cd05748, Ig_Titin_like, Immunoglobulin (Ig)-like domain of titin and similar proteins

 Score = 35.6 bits (83), Expect = 0.002
 Identities = 19/66 (28%), Positives = 27/66 (40%), Gaps = 5/66 (7%)

Query: 27 SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA 86
          SG PTP + W+ DG  L  + R  I           + + I +    D G+Y    +N A
Sbjct: 9  SGRPTPTVTWSKDGKPLKLSGRVQIET-----TASSTSLVIKNAERSDSGKYTLTLKNPA 63

Query: 87 GTCEIT 92
          G    T
Sbjct: 64 GEKSAT 69

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-III domains. Also included in this group are worm twitchin and insect projectin, thick filament proteins of invertebrate muscle, which also have repeated Ig-like and FN-III domains. Length = 74

>gnl|CDD|143179 cd04978, Ig4_L1-NrCAM_like, Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

 Score = 36.2 bits (84), Expect = 0.002
 Identities = 18/65 (27%), Positives = 26/65 (40%), Gaps = 3/65 (4%)

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           G   R+ C    G P  TI W  +G P+    P +          L +++V    +  Y 
Sbjct: 1   GETGRLDCEA-EGIPQPTITWRLNGVPIEEL-PPDPRRRV-DGGTLILSNVQPNDTAVYQ 57

Query: 268 CVASN 272
           C ASN
Sbjct: 58  CNASN 62

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. Length = 76

>gnl|CDD|143216 cd05739, Ig3_RPTP_IIa_LAR_like, Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

 Score = 36.0 bits (83), Expect = 0.002
 Identities = 23/76 (30%), Positives = 34/76 (44%), Gaps = 11/76 (14%)

Query: 17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
          G +V+L C+A G P P + W   G EL   +   +G+      +V+   NI      +  
Sbjct: 1  GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPVGR------NVLELTNI-----YESA 49

Query: 77 EYACVAENRAGTCEIT 92
           Y CVA +  G  E T
Sbjct: 50 NYTCVAISSLGMIEAT 65

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR). Length = 69

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.0 bits (83), Expect = 0.003
 Identities = 26/90 (28%), Positives = 35/90 (38%), Gaps = 4/90 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFV---SGH 58
          PP +     +  +  G   +L C A G PTP I W  +G  L T+        +   SG 
Sbjct: 1  PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGS 60

Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT 88
             +  V+       D G Y CVA N  G 
Sbjct: 61 LFFLRVVH-GRKGRSDEGVYVCVAHNSLGE 89

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143237 cd05760, Ig2_PTK7, Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

 Score = 35.3 bits (81), Expect = 0.004
 Identities = 18/58 (31%), Positives = 23/58 (39%), Gaps = 2/58 (3%)

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
           G P  T +W +DG PLS         + S    L++ S     SG Y C A N     
Sbjct: 9   GHPRPTYQWFRDGTPLSD--GQGNYSVSSKERTLTLRSAGPDDSGLYYCCAHNAFGSV 64

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in several cancers, including melanoma and colon cancer lines. Length = 77

>gnl|CDD|143234 cd05757, Ig2_IL1R_like, Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

 Score = 35.4 bits (82), Expect = 0.004
 Identities = 16/59 (27%), Positives = 25/59 (42%), Gaps = 13/59 (22%)

Query: 226 IRWLKDGKPLSPRFPVNVSDLDSF----SSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           ++W KD K L         + D       S L I +V+   +G YTC  + T    +Y+
Sbjct: 32  VQWYKDCKLL---------EGDRKRFVKGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYN 81

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1R1L) which maps to the same chromosomal location as IL1R1 and IL1R2. Length = 92

>gnl|CDD|143250 cd05773, Ig8_hNephrin_like, Eighth immunoglobulin-like domain of nephrin

 Score = 36.1 bits (83), Expect = 0.004
 Identities = 28/103 (27%), Positives = 43/103 (41%), Gaps = 16/103 (15%)

Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVN 242
               KV       A   DG  +     ++C    G P +  RW K+G PL   +PR+   
Sbjct: 11  PQLRKV-------ASRGDGSSDAN---LVCQ-AQGVPRVQFRWAKNGVPLDLGNPRYEET 59

Query: 243 V-SDLDSFSSLLSINSVSAAHS-GEYTCVASNTAAQARYSSKL 283
                   +S+L+I +VSAA     +TC A N+  +     +L
Sbjct: 60  TEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDIQL 102

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the podocytes. Length = 109

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	286
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4222|consensus	1281		99.96
PHA02785	326	IL-beta-binding protein; Provisional	99.96
KOG4222|consensus	1281		99.94
KOG4194|consensus	873		99.94
KOG4221|consensus	1381		99.94
KOG4221|consensus	1381		99.89
PHA02826	227	IL-1 receptor-like protein; Provisional	99.84
KOG4194|consensus	873		99.77
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.75
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.71
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.71
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.69
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.69
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.68
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.68
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.66
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.65
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.65
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.64
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.64
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.64
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.64
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.64
PHA02785	326	IL-beta-binding protein; Provisional	99.63
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.63
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.63
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.63
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.62
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.62
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.62
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.62
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.62
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.62
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.62
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.61
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.61
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.61
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.61
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.61
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.6
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.6
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.6
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.6
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.59
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.59
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.59
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.59
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.59
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.59
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.58
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.58
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.58
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.58
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.58
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.57
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.57
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.57
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.57
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.57
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.57
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.57
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.57
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.56
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.56
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.56
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.56
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.55
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.55
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.55
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.55
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.55
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.55
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.55
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.54
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.54
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.54
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.54
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.54
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.54
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.54
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.54
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.54
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.53
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.53
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.53
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.53
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.53
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.53
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.53
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.52
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.52
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.52
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.52
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.51
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.51
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.51
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.51
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.51
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.51
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.51
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.5
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.5
KOG3515|consensus	741		99.5
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.5
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.5
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.5
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.49
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.49
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.48
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.48
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.48
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.48
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.47
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.46
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.46
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.46
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.46
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.45
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.45
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.45
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.44
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.44
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.43
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.43
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.43
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.43
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.42
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.42
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.42
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.41
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.4
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.4
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.4
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.4
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.4
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.4
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.39
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.39
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.39
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.39
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.39
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.39
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.38
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.38
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.38
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.38
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.37
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.37
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.37
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.37
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.36
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.35
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.35
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.35
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.34
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.33
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.33
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.32
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.32
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.32
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.32
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.31
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.31
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.3
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.3
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.29
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.28
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.28
PHA02826	227	IL-1 receptor-like protein; Provisional	99.27
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.27
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.26
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.26
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.26
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.25
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.25
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.25
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.23
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.22
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.22
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.2
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.19
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.19
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.19
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.16
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.16
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.16
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.16
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.15
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.12
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.1
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	99.06
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.06
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.06
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.05
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.05
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.04
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.03
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.03
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	99.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.02
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.01
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.98
smart00409	86	IG Immunoglobulin.	98.98
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.97
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.97
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.95
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.95
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.94
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	98.94
KOG3515|consensus	741		98.94
smart00409	86	IG Immunoglobulin.	98.92
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.92
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.91
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.91
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	98.89
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.86
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	98.86
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.86
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.84
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.81
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.8
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.76
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.75
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.75
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.71
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.66
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.66
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.62
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.61
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.6
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.59
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.59
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.58
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.57
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.57
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.54
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.54
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.52
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.51
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.51
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.48
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.48
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.46
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.46
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.44
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.44
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.43
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.43
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.42
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.42
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.41
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.4
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.4
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.39
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.39
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.39
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.39
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.39
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.37
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.37
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.36
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.33
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.32
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.32
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.32
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.31
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.3
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.3
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.3
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.27
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.27
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.27
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.2
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.2
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.2
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.19
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.19
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.17
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.16
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.16
PHA03376	221	BARF1; Provisional	98.16
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.15
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.15
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.14
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.14
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.14
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.13
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.12
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.11
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.1
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.08
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.07
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.07
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.07
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	98.05
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.04
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.02
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.02
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	97.99
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.99
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	97.99
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	97.94
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.93
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	97.9
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	97.87
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.87
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.86
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	97.86
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.86
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	97.81
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	97.8
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	97.77
smart00407	75	IGc1 Immunoglobulin C-Type.	97.75
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	97.73
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	97.7
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.66
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.6
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.6
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.59
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.58
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	97.58
KOG1480|consensus	909		97.56
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.54
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	97.54
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.53
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.5
smart00406	81	IGv Immunoglobulin V-Type.	97.49
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.49
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.45
smart00406	81	IGv Immunoglobulin V-Type.	97.41
smart00407	75	IGc1 Immunoglobulin C-Type.	97.34
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.33
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.33
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.32
PHA03376	221	BARF1; Provisional	97.21
KOG1480|consensus	909		97.19
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.17
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.15
PHA02633	63	hypothetical protein; Provisional	97.14
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.12
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.12
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	97.09
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.06
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	96.86
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.77
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.74
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	96.68
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	96.64
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.62
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.59
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.58
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	96.55
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	96.51
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	96.34
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	96.33
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.32
PHA02982	251	hypothetical protein; Provisional	96.16
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.0
KOG0613|consensus	1205		95.98
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.95
PHA03270	466	envelope glycoprotein C; Provisional	95.92
PHA03269	566	envelope glycoprotein C; Provisional	95.92
PHA02633	63	hypothetical protein; Provisional	95.92
PHA03271	490	envelope glycoprotein C; Provisional	95.91
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	95.9
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	95.85
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	95.81
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.68
PHA02914	500	Immunoglobulin-like domain protein; Provisional	95.41
KOG4597|consensus	560		95.32
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	95.3
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	95.2
PHA03286	492	envelope glycoprotein E; Provisional	94.76
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	94.74
PHA02865	338	MHC-like TNF binding protein; Provisional	94.66
PHA03283	542	envelope glycoprotein E; Provisional	94.31
PHA03273	486	envelope glycoprotein C; Provisional	94.04
PHA03042	286	CD47-like protein; Provisional	93.89
KOG4597|consensus	560		93.64
PHA03273	486	envelope glycoprotein C; Provisional	93.62
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	93.22
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	93.06
PHA03271	490	envelope glycoprotein C; Provisional	93.06
PHA02982	251	hypothetical protein; Provisional	92.87
PHA03269	566	envelope glycoprotein C; Provisional	92.76
PHA03270	466	envelope glycoprotein C; Provisional	92.56
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	92.19
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	92.14
PHA03042	286	CD47-like protein; Provisional	91.92
PHA03281	642	envelope glycoprotein E; Provisional	90.42
PHA03282	540	envelope glycoprotein E; Provisional	89.27
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	89.02
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	87.23
PHA03052	69	Hypothetical protein; Provisional	85.54
KOG0613|consensus	1205		83.85

>KOG3513|consensus

Probab=100.00  E-value=1.3e-34  Score=265.23  Aligned_cols=276  Identities=32%  Similarity=0.525  Sum_probs=209.1

Q ss_pred             CCCeeEeccccc-cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .+|+|...+++. ....|+.+.|.|.+.|+|.|++.|+|.+..... .+...+.    .+   .+|.|.+++.+|+|.|+
T Consensus       239 ~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~~-~r~~~~~----~~---~vL~I~nv~~~D~G~Y~  310 (1051)
T KOG3513|consen  239 YAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPPP-RRATYSN----YG---KVLKIPNVQYEDAGEYE  310 (1051)
T ss_pred             cCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCCC-cceeeec----cc---cEEEecccCcCCCeEEE
Confidence            378888888854 678999999999999999999999998874222 3322211    22   35999999999999999


Q ss_pred             EEEEcCCEEEEE-------------------------------ecCCCCCeeEEEeeCCccCcCCC-------CcceEEE
Q psy15667         80 CVAENRAGTCEI-------------------------------TPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVI  121 (286)
Q Consensus        80 C~a~n~~g~~~~-------------------------------~~~~~~~~~~~W~~~g~~l~~~~-------~~~~l~i  121 (286)
                      |.|+|..|....                               ...+.+.+.|+|+|||.++....       ..+.|.|
T Consensus       311 C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~i  390 (1051)
T KOG3513|consen  311 CIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLII  390 (1051)
T ss_pred             EEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEE
Confidence            999999985321                               11233457899999999986432       3578999


Q ss_pred             ccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC-CceecCC---ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc
Q psy15667        122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVRLIP---KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES  197 (286)
Q Consensus       122 ~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~-~~~~~~~---~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~  197 (286)
                      .++...|+|.|+|.|.|.+|... +.+.|.|... |.+...+   ...+..|.++.|.|...+.|.|.+.|.+....+..
T Consensus       391 s~v~~~dsg~YQC~A~Nk~G~i~-anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~  469 (1051)
T KOG3513|consen  391 SNVQESDSGVYQCIAENKYGTIY-ANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQ  469 (1051)
T ss_pred             EecccccCeEEEeeeecccceEe-eeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEEcCCccccc
Confidence            99999999999999999999875 4789999765 5444333   23566899999999999999999999984331100


Q ss_pred             ---------------------------------------------------cccccCCCCCCCeEEEEEeeecCC-CCCe
Q psy15667        198 ---------------------------------------------------FAFPFDGLPEGARTRVICGVTHGD-PPLT  225 (286)
Q Consensus       198 ---------------------------------------------------~~~~~~~~~~g~~~~l~c~~~~~~-p~~~  225 (286)
                                                                         .......+..|..+.|.|++++.. .-..
T Consensus       470 ~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~v~l~Ce~shD~~ld~~  549 (1051)
T KOG3513|consen  470 SGRIRILEDGTLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGESVTLTCEASHDPSLDIT  549 (1051)
T ss_pred             CceEEECCCCcEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCceEEEEeecccCCCcceE
Confidence                                                               011134578899999999988543 3367


Q ss_pred             EEEEeCCeeCCCC---CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        226 IRWLKDGKPLSPR---FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       226 ~~W~~~g~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +.|.+||+.+...   ..+.+... ..++.|+|.++..+|+|.|+|+|...+.+++..+.|.|+
T Consensus       550 f~W~~nG~~id~~~~~~~~~~~~~-~~~g~L~i~nv~l~~~G~Y~C~aqT~~Ds~s~~A~l~V~  612 (1051)
T KOG3513|consen  550 FTWKKNGRPIDFNPDGDHFEINDG-SDSGRLTIANVSLEDSGKYTCVAQTALDSASARADLLVR  612 (1051)
T ss_pred             EEEEECCEEhhccCCCCceEEeCC-cCccceEEEeeccccCceEEEEEEEeecchhcccceEEe
Confidence            8999999977432   23333322 223679999999999999999999988888888888774

>KOG3513|consensus

Probab=100.00  E-value=4.6e-34  Score=261.61  Aligned_cols=271  Identities=29%  Similarity=0.479  Sum_probs=206.4

Q ss_pred             CeeEeccccccc-cCCC--cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc-cCCCeEE
Q psy15667          3 PILTYSFIEQTL-QPGP--AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDGGEY   78 (286)
Q Consensus         3 p~~~~~~~~~~~-~~G~--~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G~Y   78 (286)
                      |+|...+.+..+ .+-+  .+.|.|.+.|+|.|++.|++||..+......... +   .++   +|.|.+.. ..|.|.|
T Consensus        40 P~f~~q~~~~~~~~~~~~~~v~l~C~A~G~P~Psy~W~kng~~~d~~~~~~~~-~---~~G---~lvI~~p~~~~d~G~Y  112 (1051)
T KOG3513|consen   40 PVFVEQPNDVIVPFPSDDSSVTLNCEANGNPEPSYRWTKNGTEFDPTEYPRVS-V---LGG---TLVITNPDAALDQGIY  112 (1051)
T ss_pred             ceeeecCCceEEecccCCccEEEEEEecCCCCceeEEEECCeeccccccccee-e---ecC---ceEecCCcchhhccee
Confidence            788888876654 3333  3999999999999999999999988654322221 1   122   25666666 8999999


Q ss_pred             EEEEEcCCEEEEEe---------------------------------c--------------------------------
Q psy15667         79 ACVAENRAGTCEIT---------------------------------P--------------------------------   93 (286)
Q Consensus        79 ~C~a~n~~g~~~~~---------------------------------~--------------------------------   93 (286)
                      +|+|.|..|.+...                                 +                                
T Consensus       113 qC~AsN~~Gta~S~~~~l~~~~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~~~~~~r~~~~~~  192 (1051)
T KOG3513|consen  113 QCFASNKLGTAVSREARLQFGFIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFVQIDNRRVFSQEN  192 (1051)
T ss_pred             EEEeecccceeeccceeecccccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCcccccCcceeEeccc
Confidence            99999998853100                                 0                                


Q ss_pred             -------------------------------------------------------------------------CCCCCee
Q psy15667         94 -------------------------------------------------------------------------YDSGPYL  100 (286)
Q Consensus        94 -------------------------------------------------------------------------~~~~~~~  100 (286)
                                                                                               .+.+.++
T Consensus       193 G~Lyfs~V~~~D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~  272 (1051)
T KOG3513|consen  193 GNLYFSNVETSDFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPFPETETALKGQSVKLECFALGNPTPQ  272 (1051)
T ss_pred             ceEEEeecchhhcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCCCCcccccCCCeEEEEEEecCCCCCc
Confidence                                                                                     0011246


Q ss_pred             EEEeeCCc-cCcCC----CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEE
Q psy15667        101 IAWFKDGR-QIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSI  174 (286)
Q Consensus       101 ~~W~~~g~-~l~~~----~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l  174 (286)
                      |.|.|.+. +++.+    .....|.|.++..+|+|.|.|.|.|..|.. ....++.|+..|.... ..+..+..|+++++
T Consensus       273 i~W~k~~g~~~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~-~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~  351 (1051)
T KOG3513|consen  273 IKWRKVDGKPPPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSA-THSGHVTVYAPPYWLQKPQDTEADTGSNVTL  351 (1051)
T ss_pred             EEEEeCCCCCCCcceeeeccccEEEecccCcCCCeEEEEEEecccccc-eeeEEEEEecCchhhcccceeEecCCCCeEE
Confidence            89999665 55543    235789999999999999999999999954 5688999988887544 44567778999999


Q ss_pred             EeeEeeecCCeEEEEEcCCcccc----------------------------c----------------------ccc---
Q psy15667        175 KCPVAGYPIEEVHWEKVPPKIES----------------------------F----------------------AFP---  201 (286)
Q Consensus       175 ~c~~~~~p~~~v~w~~~~~~~~~----------------------------~----------------------~~~---  201 (286)
                      .|.+.|.|.|.+.|.+....+..                            |                      .++   
T Consensus       352 eC~a~g~P~p~v~WlkNg~pl~~~~r~~~~~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p  431 (1051)
T KOG3513|consen  352 ECKASGKPNPTVKWLKNGEPLEPAERDPRYKIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNP  431 (1051)
T ss_pred             EEEecCCCCCceEEeeCCeecCccCCCcceEEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCc
Confidence            99999999999999984322110                            0                      000   


Q ss_pred             ---cCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        202 ---FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       202 ---~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                         ..-+..|..+.+.|.. .+.|.+.+.|.|+++.+.++.++.+..    +++|.|.+++.+|+|.|+|.|.|..|.+.
T Consensus       432 ~~~~~~a~~g~~v~i~C~~-~asP~p~~~W~k~~~~~~~~~r~~i~e----dGtL~I~n~t~~DaG~YtC~A~N~~G~a~  506 (1051)
T KOG3513|consen  432 VERKVMAVVGGTVTIDCKP-FASPKPKVSWLKGGEKLLQSGRIRILE----DGTLEISNVTRSDAGKYTCVAENKLGKAE  506 (1051)
T ss_pred             cceEEEEEeCCeEEEeecc-CCCCcceEEEEcCCcccccCceEEECC----CCcEEecccCcccCcEEEEEEEcccCccc
Confidence               0114469999999987 478999999999999777777777654    56899999999999999999999999999


Q ss_pred             eEEEEEEC
Q psy15667        279 YSSKLQVK  286 (286)
Q Consensus       279 ~~~~L~V~  286 (286)
                      .++.|.|+
T Consensus       507 ~~~~L~Vk  514 (1051)
T KOG3513|consen  507 STGNLIVK  514 (1051)
T ss_pred             eEEEEEEe
Confidence            99999986

>KOG4222|consensus

Probab=99.96  E-value=8e-28  Score=219.24  Aligned_cols=276  Identities=26%  Similarity=0.475  Sum_probs=205.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC----CCCeeEeceEEecccceeEEEEEc--ccccCC
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNIS--HVTVED   74 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~I~--~~~~~D   74 (286)
                      .||++...+.++.+..|+.++|.|.+.|.|.|.+.|+|||....    .+.|+..     ..+.+ ..|.+.  .-...|
T Consensus        30 ~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G~~~~~~e~~shR~~l-----p~gsL-f~l~~ahg~~a~~d  103 (1281)
T KOG4222|consen   30 QPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDGENVFKGEPGSHRFLL-----PDGSL-FLLRLAHGKKAGHD  103 (1281)
T ss_pred             CCCceEecchhhhccCCCCceeecCCCCCCCCceecccCCcccCCCCCCCcceec-----CCccE-EEEecccCCcccCC
Confidence            37999999999999999999999999999999999999996432    3445432     22332 223332  223349


Q ss_pred             CeEEEEEEEcCCEEEEEe----------------------------------cCCCCCeeEEEeeCCccCcCC-------
Q psy15667         75 GGEYACVAENRAGTCEIT----------------------------------PYDSGPYLIAWFKDGRQIPGR-------  113 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~~~----------------------------------~~~~~~~~~~W~~~g~~l~~~-------  113 (286)
                      .|.|.|.|.|..|.+.-.                                  +...+.+.+.|.|||+++...       
T Consensus       104 ~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~l  183 (1281)
T KOG4222|consen  104 HGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIAL  183 (1281)
T ss_pred             CceeEeeecCccceeeecCceEEEEEechhcccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEEE
Confidence            999999999999875311                                  111233578999999998621       


Q ss_pred             CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEEEcC
Q psy15667        114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP  192 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~  192 (286)
                      ...+.|.|.++.+.|+|.|.|.+.|..|...+..++|.|+.+|.+.. ...+.+.+|+.+.+.|.+.|.|.|.+.|.+..
T Consensus       184 isgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~  263 (1281)
T KOG4222|consen  184 ISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDD  263 (1281)
T ss_pred             ecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccC
Confidence            24578999999999999999999999998877789999998887554 44577889999999999999999999999832


Q ss_pred             Ccccc--------------------------c-------------------------ccccCCCCCCCeEEEEEeeecCC
Q psy15667        193 PKIES--------------------------F-------------------------AFPFDGLPEGARTRVICGVTHGD  221 (286)
Q Consensus       193 ~~~~~--------------------------~-------------------------~~~~~~~~~g~~~~l~c~~~~~~  221 (286)
                      +.+..                          +                         ...+..+-.|..+.|.|.+. |.
T Consensus       264 ~~~P~~ry~i~~d~qtl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~-gn  342 (1281)
T KOG4222|consen  264 PSLPRSRYSILDDTQTLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETL-GN  342 (1281)
T ss_pred             CCCCccceeeeeccccccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecC-CC
Confidence            21110                          0                         00033456789999999985 88


Q ss_pred             CCCeEEEEeCCeeC--C---C-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        222 PPLTIRWLKDGKPL--S---P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       222 p~~~~~W~~~g~~~--~---~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+|.+.|.|.|...  .   + ..+...+.  ...+.|+|.++..+|.|.|.|.+.|.+|.....+.|.|
T Consensus       343 P~PavfW~keg~q~llf~~~p~~~~~r~sv--s~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q  410 (1281)
T KOG4222|consen  343 PPPAVFWLKEGSQDLLFSASPPSSNGRGSV--SPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ  410 (1281)
T ss_pred             CCcceEEeccCcceecccCCCCCcCcccee--cCCCCcccccccccccceEeecccccccccccceeEEE
Confidence            99999999988522  1   1 11111111  12348999999999999999999999998887777664

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.96  E-value=1.7e-26  Score=196.12  Aligned_cols=221  Identities=23%  Similarity=0.336  Sum_probs=140.0

Q ss_pred             ccccccCCCcEEEEEEe-----ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIA-----SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~-----~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +.+.+.+|+.+.|.|.+     .|.|.++++|+|+|....  .....     .++.   .|.|.++..+|+|.|+|.|.|
T Consensus        34 ~~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~--~~~~~-----~~g~---~l~i~~~~~~DsG~Y~C~a~N  103 (326)
T PHA02785         34 ASFMELENEPVILPCPQINTLSSGYNILDILWEKRGADND--RIIPI-----DNGS---NMLILNPTQSDSGIYICITKN  103 (326)
T ss_pred             chhhhhcCCCEEEECCCccccccCCCCceEEEEECCCccc--eEEEc-----cCCc---eEEEcccCcccCeEEEEEEEC
Confidence            45567899999999987     688999999999985422  11111     1222   366999999999999999999


Q ss_pred             CCEEEE----Ee---------------------------cC-------CCCCeeEEEeeCCccCcCC---CCcceEEEcc
Q psy15667         85 RAGTCE----IT---------------------------PY-------DSGPYLIAWFKDGRQIPGR---TSSTSLVINP  123 (286)
Q Consensus        85 ~~g~~~----~~---------------------------~~-------~~~~~~~~W~~~g~~l~~~---~~~~~l~i~~  123 (286)
                      ..|...    ++                           ..       ..+++.++|++++.....+   ...+.|.|.+
T Consensus       104 ~~g~~~~s~~L~V~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~~~~~r~~~~~~~~L~i~~  183 (326)
T PHA02785        104 ETYCDMMSLNLTIVSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRRLRNKRLKQRTPGIITIED  183 (326)
T ss_pred             CCcceEEEEEEEEEecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCCccCCcceEecCCCeEEEee
Confidence            875211    10                           00       1234679999875422122   1246799999


Q ss_pred             CCCCCCeeEEEEEEcCCcceee---eeeEEEEcC---CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc
Q psy15667        124 VGREDRGIYQCIARRSDGDVAQ---GSAELQLGG---LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES  197 (286)
Q Consensus       124 v~~~d~G~Y~C~a~~~~g~~~~---~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~  197 (286)
                      +..+|+|.|+|.+.|.+|....   ..+.|.|..   +|.+..+....+                               
T Consensus       184 v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~-------------------------------  232 (326)
T PHA02785        184 VRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVT-------------------------------  232 (326)
T ss_pred             cChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEe-------------------------------
Confidence            9999999999999998776421   123344421   111111122222                               


Q ss_pred             cccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCC-----CceeeecC-------CCeeeEEEcccCCCCC
Q psy15667        198 FAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRF-----PVNVSDLD-------SFSSLLSINSVSAAHS  263 (286)
Q Consensus       198 ~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~-----~~~~~~~~-------~~~~~L~i~~v~~~d~  263 (286)
                              ..|..+.|.|.+..++++  +.+.|+|||..+....     ++......       .....|.|.+++.+|+
T Consensus       233 --------~~G~~v~L~C~a~g~P~~~~~~v~W~kng~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~  304 (326)
T PHA02785        233 --------SIGSNLTIACRVSLRPPTTDADVFWISNGMYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDA  304 (326)
T ss_pred             --------cCCCcEEEEEEEECCCCCCCceEEEEECCEECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcC
Confidence                    345555555555433222  5788999988775321     11111100       1145799999999999


Q ss_pred             eEEEEEEEecccceee
Q psy15667        264 GEYTCVASNTAAQARY  279 (286)
Q Consensus       264 G~Y~C~a~N~~g~~~~  279 (286)
                      |.|+|.|.|..|....
T Consensus       305 G~Y~C~A~n~~~~~~~  320 (326)
T PHA02785        305 TTFTCMAFTIPSISKT  320 (326)
T ss_pred             eeeEEEEEeccCceEe
Confidence            9999999999865443

>KOG4222|consensus

Probab=99.94  E-value=1e-26  Score=212.13  Aligned_cols=269  Identities=27%  Similarity=0.442  Sum_probs=203.7

Q ss_pred             eEeccccccccCCCcEEEEE-EeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C-~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.+.+++..+..|+.++|+| .-.|.|-|.|.|.|||++|..  ..++.   .+  .++   .|.|.++...|+|.|.|.
T Consensus       134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~~~~~~~~~---li--sgG---~LlIsnvrksD~GtY~CV  205 (1281)
T KOG4222|consen  134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLDHYDVPIIA---LI--SGG---NLLISNVRKSDEGTYACV  205 (1281)
T ss_pred             cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccccccceeEE---Ee--cCC---cEEEeccccCCCceeeee
Confidence            66788888889999999999 567899999999999999862  22221   11  232   278999999999999999


Q ss_pred             EEcCCEEEE-----Ee---------------------------cCCCCCeeEEEeeCCccCcCC-----CCcceEEEccC
Q psy15667         82 AENRAGTCE-----IT---------------------------PYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPV  124 (286)
Q Consensus        82 a~n~~g~~~-----~~---------------------------~~~~~~~~~~W~~~g~~l~~~-----~~~~~l~i~~v  124 (286)
                      |+|..|.-+     +.                           ..+.+.+.+.|.+++..++-.     ....+|.|.++
T Consensus       206 atNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk~~~~~P~~ry~i~~d~qtl~i~r~  285 (1281)
T KOG4222|consen  206 ATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDPQPTVRWKKDDPSLPRSRYSILDDTQTLRIDRV  285 (1281)
T ss_pred             ecccccccccccceeeeccCCccccccccceeecccccccccccCCCCCCceeeeccCCCCCccceeeeecccccccccc
Confidence            999888532     11                           012234678999887777532     22478999999


Q ss_pred             CCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc------
Q psy15667        125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES------  197 (286)
Q Consensus       125 ~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~------  197 (286)
                      .+.|+|.|.|.+.|..|.+ ...+.++|...|.+... ....+.-|..++|.|++.|.|.|.+.|.+.......      
T Consensus       286 tp~deg~y~C~a~n~vG~l-~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf~~~p~  364 (1281)
T KOG4222|consen  286 TPTDEGTYVCPAENLVGGL-EASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLFSASPP  364 (1281)
T ss_pred             CCCcccceeeecccccccc-ccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecccCCCC
Confidence            9999999999999999987 45788999887765433 345556688899999999999999999983211100      


Q ss_pred             ------------------------------------------------------------cccccCCCCCCCeEEEEEee
Q psy15667        198 ------------------------------------------------------------FAFPFDGLPEGARTRVICGV  217 (286)
Q Consensus       198 ------------------------------------------------------------~~~~~~~~~~g~~~~l~c~~  217 (286)
                                                                                  ...-+..+.++..+.+.|..
T Consensus       365 ~~~~r~svs~~g~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~qt~~~~~~rPpp~i~~g~~nQtl~v~s~a~l~c~a  444 (1281)
T KOG4222|consen  365 SSNGRGSVSPTGTLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQTDVLTDSRPPPIIEQGPANQTLPVGSTASLPCSA  444 (1281)
T ss_pred             CcCccceecCCCCcccccccccccceEeecccccccccccceeEEEEeeeccCCCCceeeecccccccccCcccccChhh
Confidence                                                                        00013456778999999986


Q ss_pred             ecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       218 ~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      . +.|.+.+.|+++|-.+.........   ...+.|.|.+....|.|.|+|.|.+..|+..+++.|.|.
T Consensus       445 t-g~P~p~i~wl~dg~~v~~~d~~~s~---~~~~~l~i~dl~~~DtG~YTc~as~~~ges~wSatl~v~  509 (1281)
T KOG4222|consen  445 T-GAPTPNISWLKDGCNVMNPDSRISQ---QEIGSLRIRDLKGPDTGRYTCIASDESGESTWSATLTVE  509 (1281)
T ss_pred             h-CCCCCCchhhhcccccccCCcccce---eeeceeeeeeeecCCCcceeeeccCcccccccceeeEhh
Confidence            4 8999999999999866433211111   124689999999999999999999999999999999873

>KOG4194|consensus

Probab=99.94  E-value=1.6e-25  Score=193.13  Aligned_cols=238  Identities=25%  Similarity=0.417  Sum_probs=169.5

Q ss_pred             CeeEeccccccccCCCcEEEEEEeec--CCCCeeEEeeCCEEcCC-----CCeeEeceE----EecccceeEEEEEcccc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASG--NPTPDIGWTLDGFELPT-----NNRFVIGQF----VSGHGDVISHVNISHVT   71 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g--~p~p~v~W~~~~~~l~~-----~~~~~~~~~----~~~~~~~~~~l~I~~~~   71 (286)
                      |++...|-+.....|++++|+|.+.+  ..+..+.|.+|+..++.     ..++.. |.    ..........|.+.||+
T Consensus       504 pqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~-q~r~~~~~e~~~~~~~L~L~nVt  582 (873)
T KOG4194|consen  504 PQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLS-QNRNGTFGEREEYTAILHLDNVT  582 (873)
T ss_pred             cceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhh-hhccCccchhhhhhheeeeeeee
Confidence            67788888888899999999999987  34558999999764421     111211 10    00011123458899999


Q ss_pred             cCCCeEEEEEEEcCCEEE-----EE---------------------------ecCCCCCeeEEEeeCCcc-CcCC-----
Q psy15667         72 VEDGGEYACVAENRAGTC-----EI---------------------------TPYDSGPYLIAWFKDGRQ-IPGR-----  113 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~~-----~~---------------------------~~~~~~~~~~~W~~~g~~-l~~~-----  113 (286)
                      ..|.|.|+|.+.|..|+.     .+                           ...+.+.|+|.|.|+|.. ++..     
T Consensus       583 ~td~grYQCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl  662 (873)
T KOG4194|consen  583 FTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRL  662 (873)
T ss_pred             cccCceEEEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhhee
Confidence            999999999999998852     11                           122345689999998765 6541     


Q ss_pred             ---CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEE
Q psy15667        114 ---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWE  189 (286)
Q Consensus       114 ---~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~  189 (286)
                         .....+.|.+|..+|.|.|+|.|.|.+|+. ++.+.|.|...|.... ...+.+..|+++.|.|.+.+.|       
T Consensus       663 ~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~i-sanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~-------  734 (873)
T KOG4194|consen  663 HVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQI-SANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAP-------  734 (873)
T ss_pred             eecCCCCEEEEecccccccceeEEeeeccccce-eeceEEEEecCCcccccccceEEEecceEEEEEecCCCC-------
Confidence               134578899999999999999999999987 5689999988765433 3456666777777777665433       


Q ss_pred             EcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEE
Q psy15667        190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV  269 (286)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  269 (286)
                                                      +.|.+.|+|+.+++.-..+..+.   .....|.+.+...+|+|.|+|.
T Consensus       735 --------------------------------a~pr~~W~k~d~pil~t~rh~f~---d~dQllvv~~~~~~daG~yTce  779 (873)
T KOG4194|consen  735 --------------------------------ADPRLEWFKEDKPILITERHTFP---DGDQLLVVKENLVEDAGIYTCE  779 (873)
T ss_pred             --------------------------------CCccccccCCCCceEEeecccCC---CCCeEEEEEehhhhhcceEEEE
Confidence                                            23667788887766443333333   2356889999999999999999


Q ss_pred             EEecccceeeEEEEE
Q psy15667        270 ASNTAAQARYSSKLQ  284 (286)
Q Consensus       270 a~N~~g~~~~~~~L~  284 (286)
                      ..|..|.......+.
T Consensus       780 m~~~~~~~~~~i~l~  794 (873)
T KOG4194|consen  780 MSNTLGTERIHICLL  794 (873)
T ss_pred             EEeeccceeeEEEEE
Confidence            999998766655543

>KOG4221|consensus

Probab=99.94  E-value=1.7e-25  Score=205.34  Aligned_cols=231  Identities=27%  Similarity=0.476  Sum_probs=174.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .+.|...+.+.++..|+++.|.|.+.+.|.|.+.|.+|..+|+.+.|++.    ..+|    .|.|.+++..|.|.|+|.
T Consensus       140 ~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~----lpsG----~L~I~~~qp~d~g~yrc~  211 (1381)
T KOG4221|consen  140 LADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIV----LPSG----ALEISGLQPSDTGEYRCV  211 (1381)
T ss_pred             cCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEE----cCCC----cEEecccccCCCceEEEE
Confidence            57788889999999999999999999999999999999999987777653    2233    388999999999999999


Q ss_pred             EEcCCEE-----EEEe---------------------------------cCCCCCeeEEEeeCCccCcCCC------Ccc
Q psy15667         82 AENRAGT-----CEIT---------------------------------PYDSGPYLIAWFKDGRQIPGRT------SST  117 (286)
Q Consensus        82 a~n~~g~-----~~~~---------------------------------~~~~~~~~~~W~~~g~~l~~~~------~~~  117 (286)
                      +++....     ++++                                 ....+.+.|.|+|||..+....      ..+
T Consensus       212 vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlrng~~i~~ds~rivl~g~~  291 (1381)
T KOG4221|consen  212 VTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLRNGEKISVDSYRIVLVGGS  291 (1381)
T ss_pred             EecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEeeCCeeeeecceEEEEeccc
Confidence            9875421     1111                                 0112357899999999886542      357


Q ss_pred             eEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCc-eEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667        118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE  196 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~  196 (286)
                      .|.|.++...|+|.|+|.|.|..-.. .+.+.|+|..+|.+...+. ....+                            
T Consensus       292 slliS~a~~~dSg~YtC~Atn~~D~i-dasaev~V~a~P~~~~~p~~l~A~e----------------------------  342 (1381)
T KOG4221|consen  292 SLLISNATDDDSGKYTCRATNTNDSI-DASAEVTVLAPPGFTKAPTTLVAHE----------------------------  342 (1381)
T ss_pred             ceEEeccccccCceEEEEecCCCccc-ccceEEEEEcCCCCCCCCcceeeee----------------------------
Confidence            89999999999999999999853332 4567888877765543332 22223                            


Q ss_pred             ccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                                 +..+.|.|.+. |.|.|.+.|+|+|..+.+...+++..    .+.|.|..+-..|.|-|.|.|.|.+|.
T Consensus       343 -----------~~die~ec~~~-g~p~p~v~w~kNgd~~ipsdy~ki~~----~~~lrIlgi~~sdeg~yQcvaen~~G~  406 (1381)
T KOG4221|consen  343 -----------SMDIEFECPVS-GKPIPTVRWYKNGDRIIPSDYFKIVG----GGNLRILGIVKSDEGFYQCVAENDAGS  406 (1381)
T ss_pred             -----------ccceeEeCCCC-CCCcceEEEEecCcccCcccceEecC----CCCcEEEEEecccchhhhhhhccCccc
Confidence                       45555555543 55788899999999887765555432    223889999999999999999999999


Q ss_pred             eeeEEEEEE
Q psy15667        277 ARYSSKLQV  285 (286)
Q Consensus       277 ~~~~~~L~V  285 (286)
                      +...+.|.|
T Consensus       407 a~a~a~l~v  415 (1381)
T KOG4221|consen  407 AQAAAQLEV  415 (1381)
T ss_pred             ccchhhhee
Confidence            999888854

>KOG4221|consensus

Probab=99.89  E-value=1.7e-21  Score=179.24  Aligned_cols=236  Identities=25%  Similarity=0.385  Sum_probs=159.0

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEccccc-----CC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTV-----ED   74 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~-----~D   74 (286)
                      .|...+.|.  .+|..+.|.|.....  +.+.+.|.+||..|...  .|..  +  -.+|.    |.|.++..     .|
T Consensus        43 ~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkkDg~~l~e~~d~~~~--~--LsNgS----l~i~~v~~~kh~~~~  112 (1381)
T KOG4221|consen   43 QFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKKDGSQLNEVYDDRRQ--L--LSNGS----LYISSVLASKHNKVD  112 (1381)
T ss_pred             eEEeccccc--ccccceEEeccccccCCCCeeEEEccCchhhhhhhhhHHh--h--ccCCc----eeEeeeccccccccc
Confidence            355555544  889999999976544  47899999999876432  2211  1  12343    55666655     89


Q ss_pred             CeEEEEEEEcC-CEEE-----EE---------------------------ecCCCCCeeEEEeeCCccCcCCC-----Cc
Q psy15667         75 GGEYACVAENR-AGTC-----EI---------------------------TPYDSGPYLIAWFKDGRQIPGRT-----SS  116 (286)
Q Consensus        75 ~G~Y~C~a~n~-~g~~-----~~---------------------------~~~~~~~~~~~W~~~g~~l~~~~-----~~  116 (286)
                      .|.|+|.|.-. .|.+     .+                           .....+-+.+.|.||..++....     .+
T Consensus       113 eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~pl~~~~r~i~lps  192 (1381)
T KOG4221|consen  113 EGVYQCLATVEDVGSILSRTAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQPLPLDSRVIVLPS  192 (1381)
T ss_pred             CceEEEEEEccccceeecceEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccccccCCCcEEEcCC
Confidence            99999999765 3321     11                           11112234699999999775432     46


Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE  196 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~  196 (286)
                      +.|.|.++.+.|.|.|.|.+.++.....+..+.|+|..-+....            .+.  .-.                
T Consensus       193 G~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~------------~~~--fl~----------------  242 (1381)
T KOG4221|consen  193 GALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALN------------KLV--FLD----------------  242 (1381)
T ss_pred             CcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCccccc------------cee--eec----------------
Confidence            88999999999999999999998766556677888753221100            000  000                


Q ss_pred             ccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                        ......+.+|+.+.|.|.++ |.|.|++.|.|||..+.-+. +.+...  ..+.|.|.+++..|+|.|+|.|.|....
T Consensus       243 --~p~~~~v~~g~~v~leCvvs-~~p~p~v~Wlrng~~i~~ds-~rivl~--g~~slliS~a~~~dSg~YtC~Atn~~D~  316 (1381)
T KOG4221|consen  243 --EPSNAVVVEGDDVVLECVVS-GVPKPSVKWLRNGEKISVDS-YRIVLV--GGSSLLISNATDDDSGKYTCRATNTNDS  316 (1381)
T ss_pred             --CCCccccccCCcEEEEEEec-CCCCCceEEeeCCeeeeecc-eEEEEe--cccceEEeccccccCceEEEEecCCCcc
Confidence              00134467888888888774 88999999999999886544 333332  2457889999999999999999996555


Q ss_pred             eeeEEEEEE
Q psy15667        277 ARYSSKLQV  285 (286)
Q Consensus       277 ~~~~~~L~V  285 (286)
                      ...++.|.|
T Consensus       317 idasaev~V  325 (1381)
T KOG4221|consen  317 IDASAEVTV  325 (1381)
T ss_pred             cccceEEEE
Confidence            555666665

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.84  E-value=2.4e-19  Score=143.80  Aligned_cols=110  Identities=23%  Similarity=0.284  Sum_probs=75.5

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE  196 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~  196 (286)
                      ..|.|.++..+|+|.|+|.+.|..+.. ...+.|.|...+     ....+.+                            
T Consensus        98 ~~L~I~~v~~~DsG~Y~C~a~N~~~~~-~~~i~L~V~~~~-----~~~~~~~----------------------------  143 (227)
T PHA02826         98 ENLWIGNVINIDEGIYICTISSGNICE-ESTIRLTFDSGT-----INYQFNS----------------------------  143 (227)
T ss_pred             CeEEECCCChHHCEEEEEEEEECCcce-EEEEEEEEecCC-----ccceEec----------------------------
Confidence            468888888889999999998876553 334555552211     1122233                            


Q ss_pred             ccccccCCCCCCCeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        197 SFAFPFDGLPEGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       197 ~~~~~~~~~~~g~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                                 |..+.|.|.+..    +.|.|+++|+|+|+.+....++.+..   .+..|.|.+++.+|+|.|+|.|..
T Consensus       144 -----------G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~~---~~~~L~I~~V~~~DsG~YtC~a~~  209 (227)
T PHA02826        144 -----------GKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLRN---NNSTLVIKSATHDDSGIYTCNLRF  209 (227)
T ss_pred             -----------CCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEeC---CCCEEEECcCCHHhCEEEEEEEEE
Confidence                       444555554432    34678999999999987665544332   245899999999999999999998


Q ss_pred             cc
Q psy15667        273 TA  274 (286)
Q Consensus       273 ~~  274 (286)
                      ..
T Consensus       210 ~~  211 (227)
T PHA02826        210 NK  211 (227)
T ss_pred             eE
Confidence            65

>KOG4194|consensus

Probab=99.77  E-value=1.1e-17  Score=145.14  Aligned_cols=147  Identities=28%  Similarity=0.447  Sum_probs=106.6

Q ss_pred             CCCeeEEEeeCCccCcC-------------CC--------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667         96 SGPYLIAWFKDGRQIPG-------------RT--------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  154 (286)
Q Consensus        96 ~~~~~~~W~~~g~~l~~-------------~~--------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~  154 (286)
                      +.|-.+.|.++...++-             +.        ....|.+.+|...|+|.|+|.+.|..|...+..+.|+|..
T Consensus       532 asplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~  611 (873)
T KOG4194|consen  532 ASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQ  611 (873)
T ss_pred             CCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceEEEEEecccCcchhheeEEEeec
Confidence            45678999998764321             00        1256889999999999999999999999888899999987


Q ss_pred             CCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe
Q psy15667        155 LPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  233 (286)
Q Consensus       155 ~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~  233 (286)
                      .|.+... .++++..|+.+.|.|.+.                                        |.|.|+|.|-|+|.
T Consensus       612 ~PsFtktP~dltl~tg~mArl~CaAt----------------------------------------G~P~PeIawqkdgg  651 (873)
T KOG4194|consen  612 APSFTKTPEDLTLRTGQMARLECAAT----------------------------------------GHPRPEIAWQKDGG  651 (873)
T ss_pred             cCccccCcccceeecccceeeeeecc----------------------------------------CCCCcceeehhcCC
Confidence            7765433 345655566666666554                                        55666666666665


Q ss_pred             eC-CCC--CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        234 PL-SPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       234 ~~-~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .- +..  .+.+....   .....|.+|+.+|.|.|+|.|.|.+|+.+..+.|+|
T Consensus       652 tdFPAA~eRRl~Vmpe---dd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V  703 (873)
T KOG4194|consen  652 TDFPAARERRLHVMPE---DDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTV  703 (873)
T ss_pred             CCCchhhhheeeecCC---CCEEEEecccccccceeEEeeeccccceeeceEEEE
Confidence            42 221  12222222   235679999999999999999999999999999987

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.75  E-value=1e-17  Score=114.95  Aligned_cols=81  Identities=31%  Similarity=0.528  Sum_probs=70.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|+++.|.|.+.|+|.|.+.|+|++.++....++..      .+.   .|.|.++..+|+|.|+|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~------~~~---~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPMPATAEISM------SGA---VLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCCCCCCEEec------CCC---EEEECcCChhhCEEEEEE
Confidence            79999999999999999999999999999999999999988876544321      222   488999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        72 A~N~~G~~~~   81 (88)
T cd05851          72 AENIKGKDKH   81 (88)
T ss_pred             EEcCCCceEE
Confidence            9999987654

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.71  E-value=1e-16  Score=112.14  Aligned_cols=84  Identities=19%  Similarity=0.273  Sum_probs=71.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+.+.++.+|+.+.|.|.+.|.|+|.+.|+|||.+|..+.++.+..    . ...+.|.|.++..+|+|.|+|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg~~l~~~~~~~~~~----~-~~~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFRKQIQEGEGIKIEN----T-ENSSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECCEEecCCCcEEEEe----c-CCeeEEEECCCChhhCEEEEEEE
Confidence            788889999999999999999999999999999999999998666665421    1 11246999999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|....
T Consensus        76 ~N~~G~~~~   84 (98)
T cd05762          76 ENKLGSRQA   84 (98)
T ss_pred             EcCCCceeE
Confidence            999997653

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.71  E-value=9.9e-17  Score=106.10  Aligned_cols=73  Identities=25%  Similarity=0.363  Sum_probs=58.8

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|.|.+.|+|+|..+... .++.+........+|.|.++..+|+|.|+|.|.|.+|.+..++.|.|
T Consensus         2 ~l~C~v~-G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           2 KLECQIS-AIPPPKIFWKRNNEMVQYNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             EEEEEEE-ecCCCeEEEEECCEECcCCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            5777764 7888999999999988643 44444333333358999999999999999999999999999999986

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=2.2e-16  Score=109.35  Aligned_cols=85  Identities=27%  Similarity=0.472  Sum_probs=72.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||+|...+.++.+.+|+.+.|.|.+.|+|.|.+.|+++|..+..+.++.+..    .. ....|.|.++..+|+|.|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~~----~~-~~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREGQIIVSSQRHQITS----TE-YKSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECCEECCCCCcEEEEE----cC-CeeEEEECCCCcccCEeEEEE
Confidence            8999999999999999999999999999999999999999987766665421    11 123589999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        78 a~N~~G~~~~   87 (92)
T cd05747          78 VENSEGKQEA   87 (92)
T ss_pred             EEcCCCCEeE
Confidence            9999987653

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.69  E-value=1.8e-16  Score=105.09  Aligned_cols=74  Identities=32%  Similarity=0.486  Sum_probs=60.8

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +|+.+.|.|.+. |.|.|.+.|+|+|..+....+..+.    ..+.|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus         1 eG~~v~l~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   74 (74)
T cd05745           1 EGQTVDFLCEAQ-GYPQPVIAWTKGGSQLSVDRRHLVL----SSGTLRISRVALHDQGQYECQAVNIVGSQRTVAQLTV   74 (74)
T ss_pred             CCCeEEEEeECC-EecCCEEEEEECCEECCCCCCeEEc----cCCeEEEeeCCHHhCEEEEEEEEeCCCceeEEEEEeC
Confidence            477788888764 7888899999999988654433322    2458999999999999999999999999999999986

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.69  E-value=1.9e-16  Score=104.30  Aligned_cols=73  Identities=26%  Similarity=0.452  Sum_probs=61.1

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|++.|+|++..+....++.+..    ++.|.|.+++.+|+|.|+|.|.|..|....++.|+|
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~k~~~~l~~~~r~~~~~----~g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   73 (73)
T cd05852           1 GGRVIIECKPK-AAPKPKFSWSKGTELLVNNSRISIWD----DGSLEILNITKLDEGSYTCFAENNRGKANSTGVLSV   73 (73)
T ss_pred             CCeEEEEEecc-eeCCCEEEEEeCCEecccCCCEEEcC----CCEEEECcCChhHCEEEEEEEECCCCceeEEEEEEC
Confidence            56778888775 67888999999998876655554432    457999999999999999999999999999999986

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.68  E-value=2.3e-16  Score=110.54  Aligned_cols=82  Identities=24%  Similarity=0.404  Sum_probs=62.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +.+|+.+.|.|.+....|+|.+.|+|||..+.......+....    .....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus        15 v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~~~t   94 (101)
T cd04975          15 VNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASKSLT   94 (101)
T ss_pred             EECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccEEEE
Confidence            4566667777766533778889999999988755433322211    124789999999999999999999999999999


Q ss_pred             EEEEEC
Q psy15667        281 SKLQVK  286 (286)
Q Consensus       281 ~~L~V~  286 (286)
                      +.|.|+
T Consensus        95 ~~L~V~  100 (101)
T cd04975          95 FELYVN  100 (101)
T ss_pred             EEEEEE
Confidence            999884

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.68  E-value=3.7e-16  Score=103.50  Aligned_cols=73  Identities=27%  Similarity=0.381  Sum_probs=57.0

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.++..+|+|.|+|.|.|.+|..+.++.|.|
T Consensus         2 ~l~C~v~-G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           2 RLECRVS-GVPHPQIFWKKENESLTHNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             EEEEEEe-EecCCEEEEEECCEECCCCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            5677664 7788899999999888653 33443332222336999999999999999999999999999999986

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=9.7e-16  Score=106.13  Aligned_cols=80  Identities=29%  Similarity=0.420  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+.........|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus        13 v~~G~~v~L~C~v~-G~P~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05737          13 IMEGKTLNLTCTVF-GDPDPEVSWLKNDQALALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVKNKYGGETVDVTVS   91 (92)
T ss_pred             EeCCCcEEEEEEEE-ecCCCeEEEEECCEECccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEEECCCcceEEEEEe
Confidence            44566666666553 66778889999999887666555543323345799999999999999999999999999998887


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        92 v   92 (92)
T cd05737          92 V   92 (92)
T ss_pred             C
Confidence            6

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.66  E-value=1.3e-15  Score=103.83  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=62.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|+|.+.|+|+++.+... .++.+... .....|.|.++..+|+|.|+|.|.|..|+...++.|
T Consensus         7 v~~G~~v~l~c~~~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l   84 (86)
T cd05894           7 VVAGNKLRLDVPIS-GEPAPTVTWSRGDKAFTETEGRVRVESY-KDLSSFVIEGAEREDEGVYTITVTNPVGEDHASLFV   84 (86)
T ss_pred             EEcCCEEEEEeeEe-ecCCCeEEEEECCEECccCCCeEEEEEc-CCeEEEEECCCccCcCEEEEEEEEeCCCcEEEEEEE
Confidence            45667777777664 7788889999999988654 34444332 235689999999999999999999999999999988


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        85 ~V   86 (86)
T cd05894          85 KV   86 (86)
T ss_pred             EC
Confidence            76

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.66  E-value=8.6e-16  Score=106.39  Aligned_cols=79  Identities=24%  Similarity=0.507  Sum_probs=64.0

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      +..+++.+|+++.|.|.+.|.|.|++.|+|++.++..+.++.+..   ..+. ...|.|.+++.+|+|.|+|.|.|..|.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g~~l~~~~~~~~~~---~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~   83 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKNDQALALSDHYNVKV---EQGK-YASLTIKGVSSEDSGKYGIVVKNKYGG   83 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECCEECccCCCEEEEE---cCCC-EEEEEEccCChhhCEEEEEEEEECCCc
Confidence            344589999999999999999999999999999997766654321   1121 236999999999999999999999887


Q ss_pred             EEE
Q psy15667         89 CEI   91 (286)
Q Consensus        89 ~~~   91 (286)
                      ...
T Consensus        84 ~~~   86 (92)
T cd05737          84 ETV   86 (92)
T ss_pred             ceE
Confidence            653

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=1.1e-15  Score=106.85  Aligned_cols=80  Identities=26%  Similarity=0.408  Sum_probs=65.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +..|+.+.|.|.+. |.|++.+.|+|+|+.+....++.+... .....|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus        12 v~~G~~v~l~C~~~-G~p~p~v~W~kdg~~l~~~~~~~~~~~-~~~s~L~I~~~~~~D~G~Ytc~a~N~~G~~~~~~~l~   89 (98)
T cd05762          12 VRAGESVELFCKVT-GTQPITCTWMKFRKQIQEGEGIKIENT-ENSSKLTITEGQQEHCGCYTLEVENKLGSRQAQVNLT   89 (98)
T ss_pred             EECCCEEEEEEEEc-ccCCCceEEEECCEEecCCCcEEEEec-CCeeEEEECCCChhhCEEEEEEEEcCCCceeEEEEEE
Confidence            55677777777764 788899999999999976666555433 2356899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus        90 V~   91 (98)
T cd05762          90 VV   91 (98)
T ss_pred             Ee
Confidence            73

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.65  E-value=1.4e-15  Score=104.92  Aligned_cols=84  Identities=37%  Similarity=0.661  Sum_probs=73.4

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+.++.+.+|++++|.|.+.|.|.|++.|++++..|..+.++.+...    + ....|.|.++..+|+|.|+|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~----~-~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKNGRPLTSSQRYQIESD----G-GSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEETTEEEESSSSEEEEEE----T-TEEEEEESSESGGGSEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcccccccccceeeeeeeeeecc----c-ceeEEccCCCChhhCEEEEEEE
Confidence            7899999999999999999999999999999999999999988777765321    1 3457999999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|....
T Consensus        76 ~n~~g~~~~   84 (90)
T PF07679_consen   76 SNSSGEATA   84 (90)
T ss_dssp             EETTEEEEE
T ss_pred             EECCCEEEE
Confidence            999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.65  E-value=2e-15  Score=100.20  Aligned_cols=73  Identities=26%  Similarity=0.358  Sum_probs=57.7

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|.|.+.|+|++..+... .++.+.........|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus         2 ~L~C~v~-G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           2 RLECRVS-AIPPPQIFWKKNNEMLTYNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             EEEEEEe-ecCCCeEEEEECCEECCCCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            5777764 7788899999999988643 34444332223347999999999999999999999999999999976

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.64  E-value=1.5e-15  Score=106.34  Aligned_cols=82  Identities=18%  Similarity=0.312  Sum_probs=62.8

Q ss_pred             cccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         11 EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+.+.+|+++.|.|.+.| .|+|.+.|+|||.+|..+.+..+.............|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kdg~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G~~   91 (101)
T cd04975          12 TIFVNLGENLNLVVEVEAYPPPPHINWTYDNRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDASK   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEecCCCCccEEEeCCeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCccE
Confidence            557899999999999999 9999999999999998654433211000000112469999999999999999999999976


Q ss_pred             EEe
Q psy15667         90 EIT   92 (286)
Q Consensus        90 ~~~   92 (286)
                      +.+
T Consensus        92 ~~t   94 (101)
T cd04975          92 SLT   94 (101)
T ss_pred             EEE
Confidence            543

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.64  E-value=1.4e-15  Score=104.29  Aligned_cols=76  Identities=24%  Similarity=0.435  Sum_probs=58.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++..+....++  ..   .+..|.|.++..+|+|.|+|.|.|.+|...+++.|.
T Consensus        13 ~~~G~~v~l~C~~~-G~P~P~v~W~k~~~~~~~~~~~--~~---~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   86 (88)
T cd05851          13 ALKGQNVTLECFAL-GNPVPVIRWRKILEPMPATAEI--SM---SGAVLKIFNIQPEDEGTYECEAENIKGKDKHQARVY   86 (88)
T ss_pred             EeCCCcEEEEEEec-ccCCCEEEEEECCcCCCCCCEE--ec---CCCEEEECcCChhhCEEEEEEEEcCCCceEEEEEEE
Confidence            44566666666653 6777788888888766543222  11   135799999999999999999999999999999999


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        87 V~   88 (88)
T cd05851          87 VQ   88 (88)
T ss_pred             EC
Confidence            86

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.64  E-value=2.3e-15  Score=105.27  Aligned_cols=84  Identities=26%  Similarity=0.533  Sum_probs=65.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC-----eeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-----RFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      .|+|.+.+....+..|+.++|.|.+.|.|.|.++|++++..+....     ++.+.     .......|.|.++..+|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~v~-----~~~~~~~L~I~~v~~~D~G   76 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRNISSEEKTLDGHIVVR-----SHARVSSLTLKYIQYTDAG   76 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCccccCCccccCccEEEE-----cCccEEEEEEecCccCcCE
Confidence            4788877766667778999999999999999999999988775322     22221     1112246999999999999


Q ss_pred             EEEEEEEcCCEEEE
Q psy15667         77 EYACVAENRAGTCE   90 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~   90 (286)
                      .|+|.|.|..|..+
T Consensus        77 ~Y~C~A~N~~G~~~   90 (97)
T cd05869          77 EYLCTASNTIGQDS   90 (97)
T ss_pred             EEEEEEecCCCCee
Confidence            99999999988754

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.64  E-value=2.2e-15  Score=99.00  Aligned_cols=70  Identities=26%  Similarity=0.514  Sum_probs=57.1

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +.|.|.+. |.|.|.++|+|+|..+.+..++.+..    .+.|.|.++..+|+|.|+|.|.|.+|...+++.|.|
T Consensus         2 v~l~C~~~-G~P~p~v~W~k~g~~~~~~~~~~~~~----~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           2 VIFECEVT-GKPTPTVKWVKNGDMVIPSDYFKIVK----EHNLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             EEEEEEEE-EeCCCEEEEEECCeECCCCCCEEEEe----cCCEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            56777764 67888999999998886655544432    235788999999999999999999999999999976

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.64  E-value=2.1e-15  Score=103.57  Aligned_cols=81  Identities=31%  Similarity=0.564  Sum_probs=67.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|+++.|.|.+.|+|.|++.|++++..+........      .+   ..|.|.+++.+|+|.|+|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~------~~---~~L~i~~v~~~D~G~Y~C~   71 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISM------SG---AVLKIPNIQFEDEGTYECE   71 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCCCccEEEE------eC---CEEEECCCCcccCEEEEEE
Confidence            78888899999999999999999999999999999999877654433211      11   1489999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        72 a~N~~G~~~~   81 (88)
T cd04968          72 AENIKGKDTH   81 (88)
T ss_pred             EEECCCcEEE
Confidence            9999987643

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.63  E-value=1e-14  Score=124.24  Aligned_cols=137  Identities=20%  Similarity=0.306  Sum_probs=89.2

Q ss_pred             CeeEEEeeCCccCcCC---CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc--eecCCceEEecCCCE
Q psy15667         98 PYLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY--VRLIPKVTAIDGEGL  172 (286)
Q Consensus        98 ~~~~~W~~~g~~l~~~---~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~--~~~~~~~~~~~g~~~  172 (286)
                      .+.++|+|+|......   .....|.|.++..+|+|.|+|.+.|..|.. ..++.|.|.....  +....          
T Consensus        60 ~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~-~~s~~L~V~~~~~~~~~~~~----------  128 (326)
T PHA02785         60 ILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCD-MMSLNLTIVSVSESNIDLIS----------  128 (326)
T ss_pred             CceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcce-EEEEEEEEEecCCCccceee----------
Confidence            4689999998643211   123458899999999999999999987754 3456666643211  10000          


Q ss_pred             EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEee----ecCCCCCeEEEEeCCeeCCCCCCceeeecCC
Q psy15667        173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRFPVNVSDLDS  248 (286)
Q Consensus       173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~----~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~  248 (286)
                                                  ....+.+|..+.|.|..    ..+.|++.++|++++. +. ..++.  ..  
T Consensus       129 ----------------------------~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~~-~~-~~r~~--~~--  174 (326)
T PHA02785        129 ----------------------------YPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHRR-LR-NKRLK--QR--  174 (326)
T ss_pred             ----------------------------ccceecccCcEEEECCChhhcccCCCCceEEEccCCc-cC-CcceE--ec--
Confidence                                        01124456666677741    1356888999988653 21 22221  11  


Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      .++.|.|.+++.+|.|.|+|.|.|..|....
T Consensus       175 ~~~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~  205 (326)
T PHA02785        175 TPGIITIEDVRKNDAGYYTCVLKYIYGDKTY  205 (326)
T ss_pred             CCCeEEEeecChhhCeEEEEEEEeccCCEEE
Confidence            1458999999999999999999999887543

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.63  E-value=4.5e-15  Score=103.11  Aligned_cols=81  Identities=26%  Similarity=0.565  Sum_probs=61.9

Q ss_pred             CCCCCCeEEEEEeeecCCC-CCeEEEEe-CCeeCCC-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceee
Q psy15667        204 GLPEGARTRVICGVTHGDP-PLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARY  279 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p-~~~~~W~~-~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~  279 (286)
                      .+.+|+.+.|.|.+. |.| +|.+.|++ +|..+.. ..++.+........+|.|.+++.+|+|.|+|.|.|.+ |.+..
T Consensus        11 ~v~~G~~v~l~C~v~-G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC~A~N~~~g~~~~   89 (96)
T cd05865          11 EISVGESKFFLCQVA-GEAKDKDISWFSPNGEKLTPNQQRISVVRNDDYSSTLTIYNANIDDAGIYKCVVSNEDEGESEA   89 (96)
T ss_pred             EECCCCeEEEEEEEe-CCCCCCEEEEECCCCcCccccCCeEEEEeCCCCceEEEEeccChhhCEEEEEEEEcCCCCcEEE
Confidence            466788888888775 565 57999997 7776654 3333333323335789999999999999999999997 99999


Q ss_pred             EEEEEE
Q psy15667        280 SSKLQV  285 (286)
Q Consensus       280 ~~~L~V  285 (286)
                      ++.|.|
T Consensus        90 s~~l~v   95 (96)
T cd05865          90 TVNVKI   95 (96)
T ss_pred             EEEEEE
Confidence            999876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.63  E-value=1.9e-15  Score=106.00  Aligned_cols=81  Identities=27%  Similarity=0.396  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-----CCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      +..|..+.|.|.+. |.|+|.+.|+|||.++.......+...     ......|.|.++..+|+|.|+|.|.|..|+...
T Consensus        15 ~~~~~~~~l~~~v~-g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~~~   93 (101)
T cd05859          15 ANLHEVKEFVVEVE-AYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVKSY   93 (101)
T ss_pred             EecCCcEEEEEEEE-EeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceEEE
Confidence            33455555555553 566778889999998875543322211     112468999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy15667        280 SSKLQVK  286 (286)
Q Consensus       280 ~~~L~V~  286 (286)
                      ++.|.|+
T Consensus        94 t~~l~V~  100 (101)
T cd05859          94 TFALQIQ  100 (101)
T ss_pred             EEEEEEE
Confidence            9999874

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.63  E-value=2.8e-15  Score=102.17  Aligned_cols=78  Identities=31%  Similarity=0.588  Sum_probs=67.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      |...+.++.+.+|+.+.|.|.+.|.|.|.+.|+|++..+..+.++...      ++   .|.|.++..+|+|.|+|.|.|
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~------~~---~L~i~~~~~~D~G~Y~C~a~N   72 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNGQPLASENRIEVE------AG---DLRITKLSLSDSGMYQCVAEN   72 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECCEECCCCCeEEEe------CC---EEEEeeCCHHHCEEEEEEEEC
Confidence            566788899999999999999999999999999999999776665431      11   488999999999999999999


Q ss_pred             CCEEEEE
Q psy15667         85 RAGTCEI   91 (286)
Q Consensus        85 ~~g~~~~   91 (286)
                      ..|....
T Consensus        73 ~~G~~~~   79 (85)
T cd05728          73 KHGTIYA   79 (85)
T ss_pred             CCCeEEE
Confidence            9987654

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.62  E-value=6.2e-15  Score=100.60  Aligned_cols=81  Identities=27%  Similarity=0.516  Sum_probs=64.0

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....+............|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         5 ~v~~G~~~~L~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l   83 (85)
T cd05857           5 AVPAANTVKFRCPAA-GNPTPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHL   83 (85)
T ss_pred             EcCCCCEEEEEEEcC-CCCCCEEEEEECCEECCCCCceeeeEEeCCceEEEEccCCcccCEEEEEEEEeCCCEEEEEEEE
Confidence            367889999999874 6788999999999988655432111111124578999999999999999999999999999999


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        84 ~v   85 (85)
T cd05857          84 DV   85 (85)
T ss_pred             EC
Confidence            86

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.62  E-value=4.9e-15  Score=98.76  Aligned_cols=74  Identities=26%  Similarity=0.432  Sum_probs=58.2

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc-eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|.++|+|+|..+...... ....   ..+.|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         1 G~~v~l~C~~~-G~P~p~i~W~k~g~~i~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   75 (76)
T cd05867           1 GETARLDCQVE-GIPTPNITWSINGAPIEGTDPDPRRHV---SSGALILTDVQPSDTAVYQCEARNRHGNLLANAHVHV   75 (76)
T ss_pred             CCeEEEEEEee-EeCCCeEEEEECCEECCCCCCCceEEe---eCCEEEECCCChhhCEEEEEEEECCCCeEEEEEEEEE
Confidence            56677777764 6778899999999887653221 1111   1457999999999999999999999999999999987

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.62  E-value=4.1e-15  Score=103.95  Aligned_cols=84  Identities=29%  Similarity=0.515  Sum_probs=66.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-----CeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-----NRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-----~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      +|.|. .+.+..+.+|+++.|.|.+.|.|.|.+.|++++..+...     .++.+.     .......|.|.+++.+|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~G   75 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRNFSEGDKSLDGRIVVR-----GHARVSSLTLKDVQLTDAG   75 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcccCCCCccccceEEEe-----CCccEEEEEECcCCcCcCE
Confidence            67886 567889999999999999999999999999998766532     233221     1122346999999999999


Q ss_pred             EEEEEEEcCCEEEEE
Q psy15667         77 EYACVAENRAGTCEI   91 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~~   91 (286)
                      .|+|.|.|..|..+.
T Consensus        76 ~Y~C~a~N~~G~~~~   90 (96)
T cd05732          76 RYDCEASNRIGGDQQ   90 (96)
T ss_pred             EeEEEEEeCCCCcEE
Confidence            999999999987643

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.62  E-value=3.4e-15  Score=98.71  Aligned_cols=73  Identities=27%  Similarity=0.431  Sum_probs=60.8

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|.+.|+|++..+....++.+..    .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus         1 G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   73 (73)
T cd04969           1 GGDVIIECKPK-AAPKPTISWSKGTELLTNSSRICIWP----DGSLEILNVTKSDEGKYTCFAENFFGKANSTGSLSV   73 (73)
T ss_pred             CCeEEEEEeee-EcCCCEEEEEECCEEcccCCCEEECC----CCeEEEccCChhHCEEEEEEEECCCCceEEEEEEEC
Confidence            56778888764 67888999999999887665554432    357999999999999999999999999999999986

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.62  E-value=7.7e-15  Score=100.52  Aligned_cols=78  Identities=28%  Similarity=0.486  Sum_probs=62.6

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeec---CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDL---DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      |+.+.|.|.+. |.|++.+.|+|++..+... .++.+...   ......|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 g~~~~l~C~~~-g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L   79 (88)
T cd05735           1 GQKKEMSCTAH-GEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQL   79 (88)
T ss_pred             CCeEEEEEEEE-CCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEE
Confidence            67788888875 6788999999999888543 34444321   1234679999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        80 ~V~   82 (88)
T cd05735          80 TVQ   82 (88)
T ss_pred             EEe
Confidence            984

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.62  E-value=3.1e-15  Score=96.30  Aligned_cols=64  Identities=33%  Similarity=0.481  Sum_probs=51.5

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|.|.+.|+|||+.+...         .....|.|.++..+|+|.|+|.|.|..|....+..|.|
T Consensus         2 ~l~c~v~-g~P~P~v~W~kdg~~l~~~---------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l   65 (67)
T cd05863           2 KLPVKVA-AYPPPEFQWYKDGKLISGK---------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLEL   65 (67)
T ss_pred             EEEEEEE-EeCCCEEEEEECCEECccc---------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEE
Confidence            5677764 7788899999999988532         12458999999999999999999999997777766654

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.62  E-value=2.9e-15  Score=99.33  Aligned_cols=69  Identities=33%  Similarity=0.622  Sum_probs=57.8

Q ss_pred             CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      +|+++.|.|.+.|+|.|.+.|+|++..+..+.++.+.    ..    ..|.|.+++.+|+|.|+|.|.|..|..+.+
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~----~~----~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   69 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGGSQLSVDRRHLVL----SS----GTLRISRVALHDQGQYECQAVNIVGSQRTV   69 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECCEECCCCCCeEEc----cC----CeEEEeeCCHHhCEEEEEEEEeCCCceeEE
Confidence            6999999999999999999999999998766554321    11    148999999999999999999999876543

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.61  E-value=6e-15  Score=102.49  Aligned_cols=82  Identities=24%  Similarity=0.464  Sum_probs=63.4

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCC-CeeEEee-CCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTL-DGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +...+.+..+..|++++|.|.+.|.|. |.++|++ |+..+.. +.++.+.    ...+....|.|.+++.+|+|.|+|.
T Consensus         3 ~~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~----~~~~~~~~L~I~~v~~~D~G~YtC~   78 (96)
T cd05865           3 VDIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVV----RNDDYSSTLTIYNANIDDAGIYKCV   78 (96)
T ss_pred             EEEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEE----eCCCCceEEEEeccChhhCEEEEEE
Confidence            356677889999999999999999995 7999998 7777655 4454321    1122234699999999999999999


Q ss_pred             EEcCC-EEEE
Q psy15667         82 AENRA-GTCE   90 (286)
Q Consensus        82 a~n~~-g~~~   90 (286)
                      |.|.. |..+
T Consensus        79 A~N~~~g~~~   88 (96)
T cd05865          79 VSNEDEGESE   88 (96)
T ss_pred             EEcCCCCcEE
Confidence            99986 6554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.61  E-value=5.4e-15  Score=97.76  Aligned_cols=69  Identities=28%  Similarity=0.382  Sum_probs=54.8

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      +.|.|.+.|.|.|.|.|+||+..|.. ..++.+..    .++...+|.|.++..+|+|.|+|.|.|..|....+
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~----~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQ----DNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCH   70 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEE----cCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEE
Confidence            57999999999999999999999874 35554321    11122359999999999999999999999987654

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.61  E-value=7.9e-15  Score=99.96  Aligned_cols=76  Identities=22%  Similarity=0.367  Sum_probs=62.2

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      ...+.+|+++.|.|.+.|.|.|.+.|+|++.++.. +.++.+..    ..+ ...|.|.++..+|+|.|+|.|.|..|..
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~-~~~L~I~~~~~~D~G~Y~c~a~N~~G~~   78 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVES----YKD-LSSFVIEGAEREDEGVYTITVTNPVGED   78 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEE----cCC-eEEEEECCCccCcCEEEEEEEEeCCCcE
Confidence            45789999999999999999999999999999864 34554321    111 3469999999999999999999999976


Q ss_pred             EE
Q psy15667         90 EI   91 (286)
Q Consensus        90 ~~   91 (286)
                      ..
T Consensus        79 ~~   80 (86)
T cd05894          79 HA   80 (86)
T ss_pred             EE
Confidence            53

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.61  E-value=8.8e-15  Score=97.03  Aligned_cols=73  Identities=30%  Similarity=0.473  Sum_probs=59.7

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +.|.|.+. |.|.|.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         2 ~~l~c~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           2 VRLEVPIS-GRPTPTVTWSKDGKPLKLSGRVQIETT-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             EEEEeeEe-eeCCCeEEEEECCEEcCCCCeEEEEEC-CCeEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            46777764 778889999999998866555554432 23578999999999999999999999999999999876

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.61  E-value=6.1e-15  Score=103.38  Aligned_cols=83  Identities=29%  Similarity=0.573  Sum_probs=64.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEcCC-----CCeeEeceEEecccceeEEEEEcccccCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFELPT-----NNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +|.|. .+.++++.+|++++|.|.+.|.|.|.+.|+++  +..+..     +.|+.+.    ... ....|.|.+++.+|
T Consensus         2 ~p~i~-~~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v~----~~~-~~~~L~I~~v~~~D   75 (98)
T cd05870           2 QPHII-QLKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEVK----GQH-GESSLHIKDVKLSD   75 (98)
T ss_pred             CCEEE-eeccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEEe----ecC-CeeEEEEeeCCcCC
Confidence            67776 47889999999999999999999999999994  444431     2344331    111 12358999999999


Q ss_pred             CeEEEEEEEcCCEEEE
Q psy15667         75 GGEYACVAENRAGTCE   90 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~   90 (286)
                      +|.|+|.|.|..|...
T Consensus        76 ~G~Y~C~A~N~~G~~~   91 (98)
T cd05870          76 SGRYDCEAASRIGGHQ   91 (98)
T ss_pred             CEEEEEEEeccCCcce
Confidence            9999999999988654

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.60  E-value=7.6e-15  Score=97.72  Aligned_cols=75  Identities=24%  Similarity=0.400  Sum_probs=56.1

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|.+.|+|+|+.+...........  ....|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus         1 g~~~~l~C~a~-G~P~P~i~W~k~g~~i~~~~~~~~~~~--~~~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   75 (76)
T cd05868           1 GEDGTLICRAN-GNPKPSISWLTNGVPIEIAPTDPSRKV--DGDTIIFSKVQERSSAVYQCNASNEYGYLLANAFVNV   75 (76)
T ss_pred             CCCEEEEEEee-EeCCCeEEEEECCEEccccCCCceEEe--cCCEEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEEe
Confidence            45566667663 677788899999988753221111111  1347899999999999999999999999999999987

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.60  E-value=4.9e-15  Score=97.58  Aligned_cols=67  Identities=31%  Similarity=0.575  Sum_probs=57.2

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+.+.|.|.+.|.|.|.|.|+|++..+..+.++.+.    .++    .|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~r~~~~----~~g----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   67 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGTELLVNNSRISIW----DDG----SLEILNITKLDEGSYTCFAENNRGKANS   67 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCCEecccCCCEEEc----CCC----EEEECcCChhHCEEEEEEEECCCCceeE
Confidence            789999999999999999999999988777776542    122    4899999999999999999999987654

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.60  E-value=8e-15  Score=103.18  Aligned_cols=86  Identities=31%  Similarity=0.521  Sum_probs=64.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC---CeeEeceEEeccccee-EEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN---NRFVIGQFVSGHGDVI-SHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~-~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+.+..+.+|+++.|.|.+.|+|.|.+.|+|||..+...   ....  ......+... ..+.+..+..+|+|.
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~--~~~~~~~~~~~~~i~~~~~~~~D~G~   78 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQPLETDKDDPRSH--RIVLPSGSLFFLRVVHGRKGRSDEGV   78 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCEECccccCCCCcc--eEEecCCcEEEEEeeccCCCcCcCEE
Confidence            799999999999999999999999999999999999999988651   1110  0011122221 112233457999999


Q ss_pred             EEEEEEcCCEEE
Q psy15667         78 YACVAENRAGTC   89 (286)
Q Consensus        78 Y~C~a~n~~g~~   89 (286)
                      |+|.|.|..|..
T Consensus        79 Y~C~a~N~~G~~   90 (100)
T cd07693          79 YVCVAHNSLGEA   90 (100)
T ss_pred             EEEEEEccccce
Confidence            999999999874

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.60  E-value=8.2e-15  Score=98.80  Aligned_cols=77  Identities=18%  Similarity=0.320  Sum_probs=59.6

Q ss_pred             eEEEEEeeec-CCCCCeEEEEeCCeeCCC--CC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        210 RTRVICGVTH-GDPPLTIRWLKDGKPLSP--RF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       210 ~~~l~c~~~~-~~p~~~~~W~~~g~~~~~--~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+.|.|.+.+ +.+++.+.|+|||+.+..  .. ++.+.......+.|.|.+++.+|+|+|+|.|.|.++....++.|.|
T Consensus         2 ~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a~a~L~V   81 (85)
T cd05853           2 SIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSAAADLIV   81 (85)
T ss_pred             cEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceEEEEEEEE
Confidence            4667777765 566788999999999952  22 2222211123468999999999999999999999999999999998


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        82 ~   82 (85)
T cd05853          82 R   82 (85)
T ss_pred             e
Confidence            5

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.59  E-value=5.1e-15  Score=96.68  Aligned_cols=68  Identities=37%  Similarity=0.593  Sum_probs=55.8

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .|.|.+. |.|.|.+.|+|+|..+....++.+..    .+.|.|.++..+|+|.|+|.|.|.+|..+.++.|+
T Consensus         2 ~L~C~~~-g~P~p~i~W~k~g~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~Lt   69 (69)
T cd05746           2 QIPCSAQ-GDPEPTITWNKDGVQVTESGKFHISP----EGYLAIRDVGVADQGRYECVARNTIGYASVSMVLS   69 (69)
T ss_pred             EeEecce-EeCCCEEEEEECCEECCCCCCEEECC----CCEEEECcCChhhCEEEEEEEECCCCcEEEEEEeC
Confidence            5777764 77888999999999887655544332    45899999999999999999999999999988874

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.59  E-value=1.1e-14  Score=96.47  Aligned_cols=69  Identities=35%  Similarity=0.470  Sum_probs=54.9

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      |.|+|.+.|.|.|.|.|+||+..+..+ .++.+..    .+.....|.|.++..+|+|.|+|.|.|..|....+
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQ----DNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCT   70 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEE----cCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            579999999999999999999998753 4554321    11222358999999999999999999999987654

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.59  E-value=8.8e-15  Score=99.69  Aligned_cols=77  Identities=34%  Similarity=0.570  Sum_probs=63.1

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++...     ++.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         9 ~~~~~G~~~~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   82 (85)
T cd05728           9 TEADIGSSLRWECKAS-GNPRPAYRWLKNGQPLASENRIEVE-----AGDLRITKLSLSDSGMYQCVAENKHGTIYASAE   82 (85)
T ss_pred             cEEcCCCcEEEEEEee-EeCCCEEEEEECCEECCCCCeEEEe-----CCEEEEeeCCHHHCEEEEEEEECCCCeEEEEEE
Confidence            3466788888888764 6778899999999988665544332     357999999999999999999999999999999


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        83 l~V   85 (85)
T cd05728          83 LAV   85 (85)
T ss_pred             EEC
Confidence            876

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.59  E-value=1.7e-14  Score=100.09  Aligned_cols=82  Identities=29%  Similarity=0.525  Sum_probs=64.0

Q ss_pred             CCeeEecccccccc---CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc-cCCCeE
Q psy15667          2 PPILTYSFIEQTLQ---PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~---~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G~   77 (286)
                      .|.|...+.++.+.   +|+.++|.|.+.|.|.|+++|+|||..|.....+...   ...+    .|.|.++. .+|+|.
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g~~l~~~~~~~~~---~~~g----~L~i~~~~~~~D~G~   73 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNGTEIDTESDYRYS---LIDG----NLIISNPSEVKDSGR   73 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECCeECccCCCceEE---eeCC----eEEEccCCccCcCEE
Confidence            38888888887664   4789999999999999999999999998643322211   1122    37788875 699999


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|..|...
T Consensus        74 Y~C~A~N~~G~~~   86 (94)
T cd05848          74 YQCLATNSIGSIL   86 (94)
T ss_pred             EEEEEEcCCCeEE
Confidence            9999999998764

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.59  E-value=1.2e-14  Score=101.29  Aligned_cols=83  Identities=35%  Similarity=0.651  Sum_probs=66.4

Q ss_pred             CCeeEecc--ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSF--IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~--~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|....  .+..+..|+++.|.|.+.|.|.|.+.|+++|..+... .++...    ..+   ..|.|.+++.+|+|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~----~~~---~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDGEPIESGEEKYSFN----EDG---SEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECCEECcCCCCEEEEe----CCC---CEEEECCCChhhCEEE
Confidence            77777654  3447899999999999999999999999999998764 444321    112   2488999999999999


Q ss_pred             EEEEEcCCEEEEE
Q psy15667         79 ACVAENRAGTCEI   91 (286)
Q Consensus        79 ~C~a~n~~g~~~~   91 (286)
                      +|.|.|..|....
T Consensus        74 ~C~a~N~~G~~~~   86 (95)
T cd05730          74 TCIAENKAGEQEA   86 (95)
T ss_pred             EEEEEcCCCeEEE
Confidence            9999999987643

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.59  E-value=2e-14  Score=99.35  Aligned_cols=80  Identities=21%  Similarity=0.350  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++..+....++.+.........|.|.+++.+|+|.|+|.|.|.+|....++.|+
T Consensus        13 v~eG~~v~L~C~v~-g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   91 (92)
T cd05891          13 IMEGKTLNLTCTVF-GNPDPEVIWFKNDQDIELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINVKNKYGGETVDVTVS   91 (92)
T ss_pred             EcCCCEEEEEEEEE-EeCCCeEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEEEeCCCceeeEEEEE
Confidence            56777777777664 56788899999998876655544433222234799999999999999999999999999999887


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        92 ~   92 (92)
T cd05891          92 V   92 (92)
T ss_pred             C
Confidence            6

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.58  E-value=1.5e-14  Score=100.09  Aligned_cols=81  Identities=25%  Similarity=0.513  Sum_probs=64.7

Q ss_pred             CCeeEeccccccccCCC---cEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccc-cCCCe
Q psy15667          2 PPILTYSFIEQTLQPGP---AVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVT-VEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~---~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G   76 (286)
                      +|+|...+.++.+.++.   .+.|.|.+.|+|.|+++|+|++..+.. ..++.+     ..+    .|.|.++. .+|+|
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~~-----~~g----~L~I~~~~~~~D~G   71 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYSM-----VGG----NLVINNPDKYKDAG   71 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEEE-----ECC----EEEECcCCcCCCCE
Confidence            58999999888766544   899999999999999999999998853 344432     122    47898885 68999


Q ss_pred             EEEEEEEcCCEEEEE
Q psy15667         77 EYACVAENRAGTCEI   91 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~~   91 (286)
                      .|+|.|.|..|....
T Consensus        72 ~Y~C~A~N~~G~~~s   86 (93)
T cd05849          72 RYVCIVSNIYGKVRS   86 (93)
T ss_pred             EEEEEEEeCcceEEE
Confidence            999999999997653

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.58  E-value=1.4e-14  Score=96.30  Aligned_cols=69  Identities=23%  Similarity=0.368  Sum_probs=52.8

Q ss_pred             EEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        22 l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +.|.+.|+|.|.|+|+|||++|..+.++...............|.|.+++.+|+|.|+|.|+|..|..+
T Consensus         3 i~~~v~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~   71 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDE   71 (79)
T ss_pred             EEEEEeEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccc
Confidence            679999999999999999999987655422111111112234699999999999999999999998764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.58  E-value=1e-14  Score=95.80  Aligned_cols=70  Identities=27%  Similarity=0.466  Sum_probs=54.9

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|.+. |.|.|.+.|+|++..+..... ...   .....|.|.++..+|+|.|+|.|.|.+|..+.++.|.|+
T Consensus         2 ~L~C~~~-G~P~P~v~W~k~~~~~~~~~~-~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~Ve   71 (71)
T cd05876           2 VLECIAE-GLPTPEVHWDRIDGPLSPNRT-KKL---NNNKTLQLDNVLESDDGEYVCTAENSEGSARHHYTVTVE   71 (71)
T ss_pred             EEEEEee-EecCCeEEEEECCcCCCCCce-eEE---cCCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEEC
Confidence            4667663 778888889988876644321 111   225689999999999999999999999999999999985

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.58  E-value=2.7e-14  Score=98.42  Aligned_cols=81  Identities=21%  Similarity=0.422  Sum_probs=63.1

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ...+.+.++.+|+.+.|.|.+.|+|.|.+.|++||..+.........     .......|.|.++..+|.|.|+|.|.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~~~~~~~~~~~-----~~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLIVIQTRTDTLE-----TTVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEEccCCccEEEE-----ecCCEEEEEEecCCcccCEEEEEEEECC
Confidence            34455667999999999999999999999999999988654332111     1111236899999999999999999999


Q ss_pred             CEEEEE
Q psy15667         86 AGTCEI   91 (286)
Q Consensus        86 ~g~~~~   91 (286)
                      .|....
T Consensus        79 ~G~~~~   84 (90)
T cd04972          79 VGQANV   84 (90)
T ss_pred             CCceeE
Confidence            987643

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.58  E-value=2e-14  Score=96.32  Aligned_cols=71  Identities=34%  Similarity=0.586  Sum_probs=58.6

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      |+++.|.|.+.|.|.|.+.|++++..+..+.++.+..    .++ ...|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~   71 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGHVPDSARVSITS----EGG-YGTLTIRDVKESDQGAYTCEAINTRGMVFGI   71 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeECCCCCCEEEEE----CCC-EEEEEECCCChHHCEEEEEEEEecCCEEEec
Confidence            7899999999999999999999999987766664321    111 2359999999999999999999999877543

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.58  E-value=2.8e-14  Score=99.97  Aligned_cols=87  Identities=32%  Similarity=0.486  Sum_probs=68.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCC-CeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVED-GGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~   77 (286)
                      ||.|. .+..+.+.+|+++.|.|.+.|.|.| .|.|++++..|...  .++.+.+... .......|.|.++..+| .|.
T Consensus         2 pp~i~-~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~-~~~~~s~L~I~~v~~~d~~G~   79 (98)
T cd05758           2 PPIIT-SEATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPS-PGGVLSTLTISNTQESDFQTS   79 (98)
T ss_pred             CCeEc-CCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEECCcccccccee
Confidence            78886 4667789999999999999999999 69999999988643  4665533211 12334579999999955 899


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|..|..+
T Consensus        80 Y~C~A~N~~G~~~   92 (98)
T cd05758          80 YNCTAWNSFGSGT   92 (98)
T ss_pred             EEEEEEcCCCccc
Confidence            9999999998754

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.57  E-value=2.1e-14  Score=100.75  Aligned_cols=82  Identities=18%  Similarity=0.197  Sum_probs=62.3

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEec-ccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG-HGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~-~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+++..|+.+.|.|.+.|.|+|.+.|+|||.+|..+.+......... .......|.|.++..+|+|.|+|.|.|..|..
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~~   91 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDNRTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAVK   91 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECCEECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCceE
Confidence            45678999999999999999999999999999986554322100000 00112469999999999999999999999887


Q ss_pred             EEe
Q psy15667         90 EIT   92 (286)
Q Consensus        90 ~~~   92 (286)
                      +.+
T Consensus        92 ~~t   94 (101)
T cd05859          92 SYT   94 (101)
T ss_pred             EEE
Confidence            543

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.57  E-value=1.6e-14  Score=95.99  Aligned_cols=72  Identities=29%  Similarity=0.477  Sum_probs=53.8

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+ .|.|.|.++|+|+|....+. ....+... .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|
T Consensus         2 ~l~C~~-~G~P~P~v~W~k~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           2 RLECAA-TGHPTPQIAWQKDGGTDFPAARERRMHVM-PEDDVFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             EeEeec-ccccCCEEEEEeCCCccCCcccccceEEe-cCCCEEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            577866 47888899999988643221 11111111 12357899999999999999999999999999999987

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.57  E-value=2.6e-14  Score=99.19  Aligned_cols=81  Identities=27%  Similarity=0.534  Sum_probs=64.3

Q ss_pred             CCeeEeccccccccCC---CcEEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccc-cCCC
Q psy15667          2 PPILTYSFIEQTLQPG---PAVSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVT-VEDG   75 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G---~~~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~   75 (286)
                      .|.|...+.++.+.+|   ++++|.|.+.|+|.|.++|++||..|...  .++.+     ..+    .|.|.++. ..|+
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g~~l~~~~~~~~~~-----~~g----~L~I~~~~~~~D~   71 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNGTEIKFAPESRYTL-----VAG----NLVINNPQKARDA   71 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECCEECccCCCceEEE-----ECC----eEEEccCCccCcC
Confidence            4788989999987666   58999999999999999999999998643  23322     122    37788765 5999


Q ss_pred             eEEEEEEEcCCEEEEE
Q psy15667         76 GEYACVAENRAGTCEI   91 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~   91 (286)
                      |.|+|.|.|..|....
T Consensus        72 G~Y~C~A~N~~G~~~s   87 (94)
T cd05850          72 GSYQCLAINRCGTVVS   87 (94)
T ss_pred             EEEEEEEEcCcCcEEE
Confidence            9999999999997653

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.57  E-value=2.3e-14  Score=95.58  Aligned_cols=76  Identities=25%  Similarity=0.359  Sum_probs=59.7

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      |+.+.|.|.+. |.|.|.+.|+++|..+..........  .....|.|.+++.+|+|.|+|.|.|..|.....+.|.|.
T Consensus         1 G~~~~l~C~~~-g~P~p~i~W~~~g~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~V~   76 (76)
T cd04978           1 GETGRLDCEAE-GIPQPTITWRLNGVPIEELPPDPRRR--VDGGTLILSNVQPNDTAVYQCNASNVHGYLLANAFVHVV   76 (76)
T ss_pred             CCeEEEEEEce-eeCCCEEEEEECCEECCCCCCcceEE--ccCCEEEECCCChhhCEEEEEEEEccCCeEEEeEEEEEC
Confidence            56677888764 78888999999998886543221111  224689999999999999999999999999999999884

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.57  E-value=3.5e-14  Score=97.85  Aligned_cols=79  Identities=20%  Similarity=0.334  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+++|..+......... .......|.|.+++.+|.|.|+|.|.|.+|....++.|.
T Consensus        12 v~~G~~v~l~C~~~-G~P~p~v~W~~~g~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~g~Y~C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          12 VYEGGTATIRCTAE-GSPLPKVEWIIAGLIVIQTRTDTLE-TTVDIYNLQLSNITSETQTTVTCTAENPVGQANVSVQVT   89 (90)
T ss_pred             EcCCCcEEEEEEEE-EcCCCeEEEEECCEEccCCccEEEE-ecCCEEEEEEecCCcccCEEEEEEEECCCCceeEEEEEe
Confidence            55677777777765 6788889999999877544332111 122356899999999999999999999999999999987


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        90 v   90 (90)
T cd04972          90 V   90 (90)
T ss_pred             C
Confidence            5

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.57  E-value=3.5e-14  Score=96.55  Aligned_cols=76  Identities=25%  Similarity=0.408  Sum_probs=54.7

Q ss_pred             eEEEEEeeecCCCCC--eEEEEeCCeeCCCCC---CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        210 RTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       210 ~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .+.|.|.+. |.|.|  .+.|+|+|..+....   ++.+.......+.|.|.+++.+|+|.|+|.|.|.+|...+++.|.
T Consensus         2 ~~~L~C~a~-g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~~L~   80 (85)
T cd05854           2 NLTLQCHAS-HDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASATLV   80 (85)
T ss_pred             cEEEEEEEe-cCCCCCeEEEEEECCeEccccCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEEEEEEEE
Confidence            345566554 34443  678999998875432   221111112346899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        81 V~   82 (85)
T cd05854          81 VR   82 (85)
T ss_pred             EE
Confidence            84

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.57  E-value=2.9e-14  Score=98.57  Aligned_cols=82  Identities=23%  Similarity=0.433  Sum_probs=66.0

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      ..+..+++.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..   ..+. ...|.|.+++.+|+|.|+|.|.|..
T Consensus         6 ~~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~~~~~~~~~~~~---~~~~-~~~L~I~~~~~~D~G~Y~C~a~N~~   81 (92)
T cd05891           6 GLPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQDIELSEHYSVKL---EQGK-YASLTIKGVTSEDSGKYSINVKNKY   81 (92)
T ss_pred             cCCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEECCCCCCEEEEE---cCCC-EEEEEECCCChhhCEEEEEEEEeCC
Confidence            34566789999999999999999999999999999887766654321   1122 2469999999999999999999999


Q ss_pred             EEEEEe
Q psy15667         87 GTCEIT   92 (286)
Q Consensus        87 g~~~~~   92 (286)
                      |..+..
T Consensus        82 G~~~~~   87 (92)
T cd05891          82 GGETVD   87 (92)
T ss_pred             CceeeE
Confidence            876543

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.57  E-value=2.5e-14  Score=98.45  Aligned_cols=80  Identities=28%  Similarity=0.523  Sum_probs=63.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +...+.+..+.+|+++.|.|.+.|.|. .+.|++ ++..+....|+.+.    .++. ...|.|.++..+|+|.|+|.|.
T Consensus         3 ~~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~----~~g~-~~~L~I~~v~~~D~G~Y~C~A~   76 (92)
T cd05866           3 VSISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ----KEGV-RSRLTIYNANIEDAGIYRCQAT   76 (92)
T ss_pred             EEEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE----eCCC-eeEEEEecCChHHCEEEEEEEE
Confidence            345677889999999999999999998 899998 56777666666432    1222 2369999999999999999999


Q ss_pred             cCCEEEE
Q psy15667         84 NRAGTCE   90 (286)
Q Consensus        84 n~~g~~~   90 (286)
                      |..|...
T Consensus        77 N~~G~~~   83 (92)
T cd05866          77 DAKGQTQ   83 (92)
T ss_pred             cCCCcEE
Confidence            9988653

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.56  E-value=3.1e-14  Score=92.72  Aligned_cols=65  Identities=31%  Similarity=0.667  Sum_probs=52.5

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      |++++|.|.+.|+|.|.|.|+|++.+|....++..       +.  ..|.|.++  .|+|.|+|.|.|..|..+.+
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~l~~~~~~~~-------~~--~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~   65 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEELTKEDEMPV-------GR--NVLELTNI--YESANYTCVAISSLGMIEAT   65 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEECCCccceec-------Cc--cEEEEecc--ccCeeEEEEEEeCCCEEEEE
Confidence            78999999999999999999999999876554321       11  14778887  48999999999999987643

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.56  E-value=2.6e-14  Score=94.92  Aligned_cols=71  Identities=20%  Similarity=0.344  Sum_probs=55.0

Q ss_pred             EEEeeecCCCCCeEEEEeCCeeCCCCCCceee--e--cCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS--D--LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~--~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.|.+ .|.|.|+++|+|+|..+.++.+....  .  .....+.|.|.++..+|+|.|+|.|.|..|++..++.+.
T Consensus         3 i~~~v-~G~P~Pti~W~kng~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTV-KGNPKPTLQWFHEGAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEE-eEeCCCceEEEECCEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            45555 37899999999999999766543221  1  112356899999999999999999999999998887764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.56  E-value=3.3e-14  Score=94.75  Aligned_cols=66  Identities=29%  Similarity=0.585  Sum_probs=54.4

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCC---eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNN---RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+++.|.|.+.|.|.|+++|+|||.++....   ++..      ..   ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g~~i~~~~~~~~~~~------~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSINGAPIEGTDPDPRRHV------SS---GALILTDVQPSDTAVYQCEARNRHGNLLA   69 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECCEECCCCCCCceEEe------eC---CEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence            7899999999999999999999999886432   2221      11   14889999999999999999999998754

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.56  E-value=3.9e-14  Score=95.20  Aligned_cols=72  Identities=24%  Similarity=0.360  Sum_probs=55.2

Q ss_pred             EEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec------CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |.|.+ .|.|.|.++|+|+|+.+...........      ....+.|.|.++..+|+|.|+|.|.|.+|.+..+..|..
T Consensus         3 i~~~v-~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~~   80 (81)
T cd04971           3 IPFTV-RGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAHF   80 (81)
T ss_pred             EEEEe-EeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEeee
Confidence            45555 3788999999999999876553322211      123557999999999999999999999999998887753

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.55  E-value=2.5e-14  Score=93.87  Aligned_cols=68  Identities=28%  Similarity=0.461  Sum_probs=53.6

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|+|.+.|+|+|..+....+..     .....|.|.++..+|+|.|+|.|.|.+|....+..+.|
T Consensus         2 ~l~c~v~-g~P~p~v~W~k~g~~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~   69 (71)
T cd04976           2 RLPVKVK-AYPPPEIQWYKNGKLISEKNRTK-----KSGHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTL   69 (71)
T ss_pred             EEEeEEE-EeCCCEEEEEECCEECCCCCEEE-----cCCCEEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEE
Confidence            5677764 67888999999999887653221     12467999999999999999999999998777766654

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.55  E-value=6.4e-14  Score=92.84  Aligned_cols=68  Identities=29%  Similarity=0.467  Sum_probs=55.9

Q ss_pred             cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        19 ~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++.|.|.+.|.|.|.+.|+|||..+..+.++.+..    . +....|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~~l~~~~~~~~~~----~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGKPLKLSGRVQIET----T-ASSTSLVIKNAERSDSGKYTLTLKNPAGEKSA   68 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCEEcCCCCeEEEEE----C-CCeEEEEECCCCcCcCEEEEEEEECCCccEEE
Confidence            47899999999999999999999997666664421    1 12346999999999999999999999987654

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.55  E-value=1.3e-13  Score=96.36  Aligned_cols=36  Identities=33%  Similarity=0.481  Sum_probs=33.6

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus        61 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          61 VSSLTLKDVQLTDAGRYDCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEECcCCcCcCEEeEEEEEeCCCCcEEEEEEeC
Confidence            468999999999999999999999999999999876

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.55  E-value=5.4e-14  Score=93.29  Aligned_cols=69  Identities=30%  Similarity=0.385  Sum_probs=54.3

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      +.|.|.+.|.|.|.|.|+||+..|..+ .++.+..    .+.....|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~   70 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQ----DNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCN   70 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEE----cCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEE
Confidence            479999999999999999999998743 4543311    12222359999999999999999999999987543

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.55  E-value=6.2e-14  Score=92.05  Aligned_cols=66  Identities=27%  Similarity=0.568  Sum_probs=53.9

Q ss_pred             cEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         19 AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        19 ~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      ++.|.|.+.|.|.|.++|+|++..+....++.+.    ..+    .|.|.++..+|+|.|+|.|.|..|.....
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~~~~~~~~~~~----~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   66 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDMVIPSDYFKIV----KEH----NLQVLGLVKSDEGFYQCIAENDVGNVQAS   66 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeECCCCCCEEEE----ecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEE
Confidence            4789999999999999999999988766655431    122    26788999999999999999999987643

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.55  E-value=5.6e-14  Score=94.07  Aligned_cols=76  Identities=24%  Similarity=0.301  Sum_probs=57.7

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|.+.|++++..+....++.+... .....|.|.+++.+|+|.|+|.|.|..|....++.+.+
T Consensus         1 G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~~   76 (78)
T cd05743           1 GETVEFTCVAT-GVPTPIINWRLNWGHVPDSARVSITSE-GGYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGIL   76 (78)
T ss_pred             CCEEEEEEEEE-EecCCEEEEEECCeECCCCCCEEEEEC-CCEEEEEECCCChHHCEEEEEEEEecCCEEEecccEEE
Confidence            45667777664 677788889988887765555444332 23568999999999999999999999999887776643

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.55  E-value=2.4e-14  Score=93.26  Aligned_cols=66  Identities=23%  Similarity=0.432  Sum_probs=50.6

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .|.|.+. |.|.|.+.|+|+|..+.....  +.    ....|.|.++..+|+|.|+|.|.|.+|....+..++
T Consensus         2 ~~~c~v~-G~P~P~v~W~k~g~~l~~~~~--~~----~~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~   67 (70)
T cd05864           2 KIPVKYY-GYPPPEVKWYKNGQLIVLNHT--FK----RGVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQ   67 (70)
T ss_pred             EEEeEEE-EeCCCEEEEEECCEECCCCCE--Ec----cCCEEEECcCCHHHCEEEEEEEEECCCceeeEEEEE
Confidence            4677764 788899999999998865422  11    134799999999999999999999999655555444

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.54  E-value=5.7e-14  Score=96.43  Aligned_cols=76  Identities=20%  Similarity=0.397  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++..+.......     ...+.|.|.+++.+|+|.|+|.|.|..|....++.|.
T Consensus        13 ~~~g~~v~l~C~~~-g~P~p~v~W~k~~~~~~~~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   86 (88)
T cd04968          13 ALKGQNVTLECFAL-GNPVPQIKWRKVDGSMPSSAEIS-----MSGAVLKIPNIQFEDEGTYECEAENIKGKDTHQGRIY   86 (88)
T ss_pred             EeCCCcEEEEEEee-EeCCCEEEEEECCCcCCCccEEE-----EeCCEEEECCCCcccCEEEEEEEEECCCcEEEEEEEE
Confidence            34566666666553 56667778888776554332211     1246899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus        87 V~   88 (88)
T cd04968          87 VQ   88 (88)
T ss_pred             EC
Confidence            84

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.54  E-value=7.8e-14  Score=95.52  Aligned_cols=73  Identities=23%  Similarity=0.396  Sum_probs=57.8

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      |+.++|.|.+.|.|++.+.|++++..+..+ .++.+.... ......+.|.|.++..+|+|.|+|.|.|..|..+
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~-~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~   74 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKE-VGDEVISTLQILPTVREDSGFFSCHAINSYGEDR   74 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEec-CCCcEEEEEEECCCCcccCEEEEEEEEcCCCcce
Confidence            789999999999999999999999988643 455442211 1122345699999999999999999999998765

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.54  E-value=4.2e-14  Score=94.89  Aligned_cols=75  Identities=23%  Similarity=0.399  Sum_probs=61.0

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+.. . .+.+.|+|+|..+....++.+.     ...|.|.++..+|+|.|+|.|.|..|.....+.|
T Consensus         5 ~~~~G~~v~l~C~~~~-~-~~~v~W~k~g~~l~~~~~~~~~-----~~~L~I~~~~~~DsG~Y~C~a~n~~g~~~~~~~v   77 (79)
T cd04973           5 SAHPGDLLQLRCRLRD-D-VQSINWTKDGVQLGENNRTRIT-----GEEVQIKDAVPRDSGLYACVTSSPSGSDTTYFSV   77 (79)
T ss_pred             EecCCCCEEEEEEecC-C-CceEEEeeCCcCCCCCceEEEe-----CCEEEECCCChhhCEEEEEEEeCCCCcccEEEEE
Confidence            3567888888888764 3 5689999999998766554432     2479999999999999999999999998888887


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        78 ~V   79 (79)
T cd04973          78 NV   79 (79)
T ss_pred             eC
Confidence            65

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.54  E-value=3.5e-14  Score=95.22  Aligned_cols=73  Identities=23%  Similarity=0.407  Sum_probs=58.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |...+.++.+.+|+++.|.|.+.|+|.| +|.|+|||.+|..  ++..      .+   ..|.|.++  .|+|.|+|.|.
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~~l~~--~~~~------~~---s~L~i~~~--~d~g~Y~C~A~   67 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGSPLGD--PPAP------SP---SVLNVPGL--NETSKFSCEAH   67 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCEECCC--CCCC------CC---CEEEEccc--cCCeEEEEEEE
Confidence            4567888999999999999999999999 7999999998854  1110      11   24778876  58999999999


Q ss_pred             cCCEEEE
Q psy15667         84 NRAGTCE   90 (286)
Q Consensus        84 n~~g~~~   90 (286)
                      |..|...
T Consensus        68 N~~G~~~   74 (81)
T cd05749          68 NAKGVTT   74 (81)
T ss_pred             eccCcEE
Confidence            9998664

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.54  E-value=5.8e-14  Score=96.80  Aligned_cols=79  Identities=38%  Similarity=0.673  Sum_probs=63.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+.+.|+++|..+....++.+.... ....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        12 v~~G~~~~l~c~~~-~~p~~~v~W~~~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   12 VKEGESVTLECEVS-GNPPPTVTWYKNGRPLTSSQRYQIESDG-GSSSLTIKNVTREDAGTYTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             EETTSEEEEEEEEE-ESSSSEEEEEETTEEEESSSSEEEEEET-TEEEEEESSESGGGSEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEE-eCCCCcccccccccceeeeeeeeeeccc-ceeEEccCCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            44566666666654 4467788999999988877666665544 578999999999999999999999999999999998


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        90 V   90 (90)
T PF07679_consen   90 V   90 (90)
T ss_dssp             E
T ss_pred             C
Confidence            7

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.54  E-value=7.9e-14  Score=96.53  Aligned_cols=78  Identities=24%  Similarity=0.541  Sum_probs=60.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|.+|....++.|+
T Consensus        15 ~~~G~~~~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   92 (92)
T cd05747          15 VSEGESARFSCDVD-GEPAPTVTWMREGQIIVSSQRHQITST-EYKSTFEISKVQMSDEGNYTVVVENSEGKQEAQFTLT   92 (92)
T ss_pred             EeCCCcEEEEEEEe-ecCCCEEEEEECCEECCCCCcEEEEEc-CCeeEEEECCCCcccCEeEEEEEEcCCCCEeEEEEeC
Confidence            55666666666554 677788899999988876655554432 2356899999999999999999999999998888773

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.54  E-value=5e-14  Score=98.17  Aligned_cols=77  Identities=29%  Similarity=0.480  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +..|+.+.|.|.+. |.|.|.+.|+|+|..+... .++.+.   .....|.|.+++.+|+|.|+|.|.|.+|....++.|
T Consensus        15 ~~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L   90 (95)
T cd05730          15 ANLGQSVTLACDAD-GFPEPTMTWTKDGEPIESGEEKYSFN---EDGSEMTILDVDKLDEAEYTCIAENKAGEQEAEIHL   90 (95)
T ss_pred             EeCCCCEEEEEecc-EeCCCEEEEEECCEECcCCCCEEEEe---CCCCEEEECCCChhhCEEEEEEEEcCCCeEEEEEEE
Confidence            45566666666653 5677888899998887554 222221   224579999999999999999999999999999999


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        91 ~V   92 (95)
T cd05730          91 KV   92 (95)
T ss_pred             EE
Confidence            87

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.54  E-value=5.1e-14  Score=93.05  Aligned_cols=68  Identities=34%  Similarity=0.580  Sum_probs=57.4

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      |+.+.|.|.+.|.|.|.++|+|++..+..+.++.+.    ..+    .|.|.++..+|+|.|+|.|.|..|..+.+
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~----~~~----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~   68 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTELLTNSSRICIW----PDG----SLEILNVTKSDEGKYTCFAENFFGKANST   68 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCEEcccCCCEEEC----CCC----eEEEccCChhHCEEEEEEEECCCCceEEE
Confidence            789999999999999999999999998776666431    122    48899999999999999999999876543

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.54  E-value=5.5e-14  Score=93.82  Aligned_cols=70  Identities=30%  Similarity=0.523  Sum_probs=52.5

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCC-ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|.|.+.|+|+|..+..... +.+..   ....|.|.++.++|+|.|+|.|.|.+|....++.++|
T Consensus         2 ~L~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~~---~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l   72 (77)
T cd05760           2 TLRCHID-GHPRPTYQWFRDGTPLSDGQGNYSVSS---KERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTL   72 (77)
T ss_pred             EEEEEee-ecCCCcEEEEECCEECCCCCccEEEeC---CCCEEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEE
Confidence            5777664 778889999999998865432 22221   2357999999999999999999999998765555443

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.53  E-value=6.3e-14  Score=96.54  Aligned_cols=36  Identities=36%  Similarity=0.543  Sum_probs=34.1

Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ..|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~sa~L~V~   90 (90)
T cd04974          55 EVLYLRNVSFDDAGEYTCLAGNSIGPSHHSAWLTVL   90 (90)
T ss_pred             ceEEEeccccccCcEEEEEeecccCcccCCEEEEeC
Confidence            478999999999999999999999999999999985

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=6.8e-14  Score=92.65  Aligned_cols=72  Identities=29%  Similarity=0.559  Sum_probs=54.5

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEEC
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  286 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V~  286 (286)
                      .|.|.+. |.|.|.+.|+|++..+.......+...  .++.|.|.+++.+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus         2 ~l~C~~~-G~P~p~v~W~k~~~~~~~~~~~~~~~~--~~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v~   74 (74)
T cd05738           2 TMLCAAS-GNPDPEITWFKDFLPVDTTSNGRIKQL--RSGALQIENSEESDQGKYECVATNSAGTRYSAPANLYVR   74 (74)
T ss_pred             EEEEEEe-EecCCEEEEEECCEECccCCCCCEEEc--CCcEEEECCCChhhCEEEEEEEECCCCceEcccEEEEEC
Confidence            5677653 778888999999987753222222221  2457999999999999999999999997 4788889886

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.53  E-value=5.6e-14  Score=91.79  Aligned_cols=68  Identities=32%  Similarity=0.514  Sum_probs=54.4

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|.+. |.|+|.+.|+|++..+... ++.+.    ....|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus         2 ~l~C~~~-g~P~p~v~W~k~~~~~~~~-~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           2 EFQCEVG-GDPVPTVLWRKEDGELPKG-RAEIL----DDKSLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             EEEEECc-cCCCCEEEEEECCccCCCC-cEEEe----eCCEEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            5778764 7788899999998766432 33322    1457999999999999999999999999999999876

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=8.6e-14  Score=92.25  Aligned_cols=73  Identities=34%  Similarity=0.615  Sum_probs=56.6

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+. |.|.|.+.|++ ++..+....+..+..    .+.|.|..+..+|+|.|+|.|.|..|..+.++.|.|
T Consensus         1 G~~~~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   74 (74)
T cd05764           1 GQRATLRCKAR-GDPEPAIHWISPDGKLISNSSRTLVYD----NGTLDILITTVKDTGSFTCIASNAAGEATATVELHI   74 (74)
T ss_pred             CCeEEEEEEcc-CcCCCEEEEEeCCCEEecCCCeEEEec----CCEEEEEECChhhCEEEEEEEECCCCeEEEEEEEEC
Confidence            56778888764 77888999986 566654443332211    357999999999999999999999999999998876

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.53  E-value=9.3e-14  Score=94.73  Aligned_cols=76  Identities=29%  Similarity=0.537  Sum_probs=60.1

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.+.+|+.+.|.|.+.|.|.|.+.|+|||..+..+.+..... .. ...  ..|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~-~~-~~~--~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNGKEFKQEHRIGGYK-VR-NQH--WSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECCEECCCCCceeeeE-Ee-CCc--eEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            468899999999999999999999999999987654431101 01 111  24889999999999999999999998654

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.53  E-value=5.1e-14  Score=94.46  Aligned_cols=71  Identities=34%  Similarity=0.619  Sum_probs=59.1

Q ss_pred             ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+..+.+|+.++|.|.+.++ .+.+.|+|||.+|..+.++.+.      ++   .|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g~~l~~~~~~~~~------~~---~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKDGVQLGENNRTRIT------GE---EVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeCCcCCCCCceEEEe------CC---EEEECCCChhhCEEEEEEEeCCCCcc
Confidence            45678999999999999997 5689999999999877666431      22   48899999999999999999987764


Q ss_pred             E
Q psy15667         90 E   90 (286)
Q Consensus        90 ~   90 (286)
                      .
T Consensus        72 ~   72 (79)
T cd04973          72 T   72 (79)
T ss_pred             c
Confidence            3

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.53  E-value=8.3e-14  Score=92.68  Aligned_cols=70  Identities=29%  Similarity=0.467  Sum_probs=54.6

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEe
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT   92 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~   92 (286)
                      |+.++|.|.+.|+|.|+|+|+|||.+|........ .  ...+.   .|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g~~i~~~~~~~~-~--~~~~~---~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~   70 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNGVPIEIAPTDPS-R--KVDGD---TIIFSKVQERSSAVYQCNASNEYGYLLAN   70 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECCEEccccCCCce-E--EecCC---EEEECCCCHhhCEEEEEEEEcCCCEEEEE
Confidence            78999999999999999999999999853221110 0  11222   37899999999999999999999987543

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.53  E-value=9.5e-14  Score=92.53  Aligned_cols=73  Identities=30%  Similarity=0.535  Sum_probs=58.5

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|.+. |.|+|.+.|+|++..+......++... .....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus         2 ~L~C~v~-g~P~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           2 SLRCHAE-GIPLPRLTWLKNGMDITPKLSKQLTLI-ANGSELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             EeEeEee-ecCCCEEEEEECCEECCCCCCccEEEe-CCCCEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            5777765 678889999999998865544333332 223579999999999999999999999999999999885

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=9.9e-14  Score=90.32  Aligned_cols=69  Identities=22%  Similarity=0.464  Sum_probs=52.2

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      |+.+.|.|.+. |.|.|.+.|+|++..+....+..  .   ....|.|.++  .|+|.|+|.|.|.+|....++.|+
T Consensus         1 G~~v~L~C~a~-G~P~P~v~W~k~g~~l~~~~~~~--~---~~~~L~i~~~--~d~G~Y~C~A~N~~G~~~~~a~l~   69 (69)
T cd05739           1 GGSVNLTCVAV-GAPMPYVKWMKGGEELTKEDEMP--V---GRNVLELTNI--YESANYTCVAISSLGMIEATAQVT   69 (69)
T ss_pred             CCeEEEEEEee-ecCCCEEEEEECCEECCCcccee--c---CccEEEEecc--ccCeeEEEEEEeCCCEEEEEEEEC
Confidence            45677777664 77888999999998875443221  1   1346888887  489999999999999999988874

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.52  E-value=3.2e-14  Score=91.55  Aligned_cols=57  Identities=26%  Similarity=0.400  Sum_probs=48.2

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      +.|.|.+.|.|+|.++|+|||++|....          .+   ..|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~----------~~---~~L~i~~v~~~D~G~YtC~a~N~~g~~   57 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDGKLISGKH----------SQ---HSLQIKDVTEASAGTYTLVLWNSAAGL   57 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECCEECcccC----------Cc---CEEEECCCCHHHCEEEEEEEEECCccE
Confidence            4799999999999999999999985321          11   248899999999999999999998854

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.52  E-value=2e-13  Score=95.63  Aligned_cols=36  Identities=31%  Similarity=0.445  Sum_probs=33.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        63 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          63 ESSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             eeEEEEeeCCcCCCEEEEEEEeccCCcceeEEEEeC
Confidence            457999999999999999999999999999998875

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.52  E-value=4.7e-14  Score=92.10  Aligned_cols=64  Identities=36%  Similarity=0.745  Sum_probs=53.9

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |.|.|.+.|.|.|.+.|+|||..+..+.++.+..    .    ..|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g~~~~~~~~~~~~~----~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   64 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDGVQVTESGKFHISP----E----GYLAIRDVGVADQGRYECVARNTIGYASV   64 (69)
T ss_pred             CEeEecceEeCCCEEEEEECCEECCCCCCEEECC----C----CEEEECcCChhhCEEEEEEEECCCCcEEE
Confidence            5799999999999999999999987766665421    1    14899999999999999999999987654

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.52  E-value=9.3e-14  Score=95.74  Aligned_cols=74  Identities=27%  Similarity=0.416  Sum_probs=53.3

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCC--------CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLS--------PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      |+.+.|.|.+ .|.|.|.+.|+|+|..+.        ...++.+.    ..+.|.|.+++.+|+|.|+|.|.|.+|....
T Consensus         1 G~~v~L~C~~-~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEA-TGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTGDLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEEC-CccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCCeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            4556666665 356677777777765321        11222221    1347999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy15667        280 SSKLQVK  286 (286)
Q Consensus       280 ~~~L~V~  286 (286)
                      .+.|.|+
T Consensus        76 ~~~l~V~   82 (90)
T cd05726          76 KAYLEVT   82 (90)
T ss_pred             EEEEEEe
Confidence            9999884

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.51  E-value=1.3e-13  Score=95.23  Aligned_cols=79  Identities=29%  Similarity=0.504  Sum_probs=61.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +.+.+.+..+..|+++.|.|.+.|.|. .+.|++ ++..+....++...    ..+.....|+|.+++.+|+|.|+|.|.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~~v~~~D~G~Y~C~A~   77 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVV----QNDDVRSTLTIYNANIEDAGIYKCVAT   77 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEE----eCCCCEEEEEEecCCcccCEEEEEEEE
Confidence            456788889999999999999999974 899997 66666554444321    122333469999999999999999999


Q ss_pred             cCCEE
Q psy15667         84 NRAGT   88 (286)
Q Consensus        84 n~~g~   88 (286)
                      |..|.
T Consensus        78 N~~g~   82 (92)
T cd04977          78 DAKGT   82 (92)
T ss_pred             cCCCC
Confidence            98653

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.51  E-value=1.3e-13  Score=94.96  Aligned_cols=35  Identities=34%  Similarity=0.559  Sum_probs=33.6

Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        55 ~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   89 (90)
T cd05858          55 EVLYLRNVTFEDAGEYTCLAGNSIGISHHSAWLTV   89 (90)
T ss_pred             eEEEEccCCHHHCEEEEEEEEeCCCcccceEEEEE
Confidence            57999999999999999999999999999999987

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.51  E-value=1.4e-13  Score=94.06  Aligned_cols=77  Identities=30%  Similarity=0.556  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  282 (286)
                      +.+|+.+.|.|.+..|.|.|.+.|+|+|..+.... ++.+..    .+.|.|.+++.+|+|.|+|.|.|.+|.. +..+.
T Consensus         8 ~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~   83 (86)
T cd05724           8 VAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIVD----DGNLLIAEARKSDEGTYKCVATNMVGERESAAAR   83 (86)
T ss_pred             EeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEcc----CCEEEEeECCcccCEEEEEEEEeccCceeeeeEE
Confidence            56788888888776688899999999999886532 232221    3579999999999999999999999975 44666


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        84 l~V   86 (86)
T cd05724          84 LSV   86 (86)
T ss_pred             EEC
Confidence            654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.51  E-value=1.2e-13  Score=92.73  Aligned_cols=70  Identities=20%  Similarity=0.315  Sum_probs=52.9

Q ss_pred             EEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEe--cccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         22 LKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS--GHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        22 l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |.|.+.|+|.|.|+|+|||+.|..+.++.......  ........|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         3 i~~~v~G~P~P~v~W~k~g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~   74 (81)
T cd04971           3 IPFTVRGNPKPTLTWYHNGAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSK   74 (81)
T ss_pred             EEEEeEeeCCCcEEEEECCEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeee
Confidence            68999999999999999999998665433211111  01112335999999999999999999999987653

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.51  E-value=7.1e-14  Score=91.85  Aligned_cols=70  Identities=33%  Similarity=0.545  Sum_probs=53.6

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|.+. |.|.|.+.|+|++..+.... ....   .....|.|.+++.+|+|.|+|.|.|..|....++.|.|+
T Consensus         2 ~l~C~~~-g~P~p~v~W~k~~~~~~~~~-~~~~---~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   71 (71)
T cd05731           2 LLECIAE-GLPTPEISWIKIGGELPADR-TKFE---NFNKTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTVE   71 (71)
T ss_pred             EEEEEee-EecCCeEEEEECCeECCCCc-eeEe---cCCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEEC
Confidence            4666654 66777888888887664321 1111   224589999999999999999999999999999999986

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.51  E-value=2e-13  Score=95.47  Aligned_cols=36  Identities=39%  Similarity=0.525  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+.|.|.+++.+|+|.|+|.|.|.+|....++.|.|
T Consensus        62 ~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          62 VSSLTLKYIQYTDAGEYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEEecCccCcCEEEEEEEecCCCCeeEEEEEEC
Confidence            467999999999999999999999999999999976

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.51  E-value=1.6e-13  Score=94.41  Aligned_cols=79  Identities=28%  Similarity=0.464  Sum_probs=62.6

Q ss_pred             CeeE--eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          3 PILT--YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         3 p~~~--~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      |.|.  -...++++.+|++++|.|.+.|. .|.+.|++|+..+..+ ++..    ...+   ..|.|.+++.+|+|.|+|
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~~l~~~-~~~~----~~~~---~~L~I~~v~~~D~G~Y~C   72 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGSLLVPP-RLQL----SNDN---RTLTFNNVTRSDTGHYQC   72 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECCEECCCC-CEEE----eCCC---CEEEECcCChhhCEEEEE
Confidence            4553  44557899999999999999999 9999999999988653 3322    1111   248999999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        73 ~a~N~~G~~~   82 (91)
T cd05740          73 EASNEVSNMT   82 (91)
T ss_pred             EEEcCCCCEE
Confidence            9999998754

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.50  E-value=6.5e-14  Score=91.21  Aligned_cols=61  Identities=31%  Similarity=0.521  Sum_probs=50.7

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +.|.|.+.|.|.|.+.|+|||++|..+.++.       .+   ..|.|.++..+|+|.|+|.|.|..|..+
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g~~l~~~~~~~-------~~---~~L~I~~v~~~D~G~YtC~a~N~~G~~~   61 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNGQLIVLNHTFK-------RG---VHLTIYEVTEKDAGNYTVVLTNPITKEE   61 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEc-------cC---CEEEECcCCHHHCEEEEEEEEECCCcee
Confidence            4689999999999999999999997654331       11   1488999999999999999999988654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.50  E-value=7.9e-14  Score=91.44  Aligned_cols=61  Identities=31%  Similarity=0.510  Sum_probs=51.2

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      +.|.|.+.|.|.|.+.|+|||.+|..+.++..      .+   ..|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~g~~l~~~~~~~~------~~---~~L~I~~v~~~D~G~YtC~a~N~~g~~   61 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKNGKLISEKNRTKK------SG---HSLTIKDVTEEDAGNYTVVLTNKQAKL   61 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEECCEECCCCCEEEc------CC---CEEEECcCCHHHCEEEEEEEEcCCccE
Confidence            47999999999999999999999977655432      11   258999999999999999999998854

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>KOG3515|consensus

Probab=99.50  E-value=3e-13  Score=122.45  Aligned_cols=271  Identities=19%  Similarity=0.251  Sum_probs=167.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|..+-...+.-+.+|+.|.|.|.+.++| .+.|.|++.+..+-  .|+..   +  ..   .+|...+...+.-+.|.|
T Consensus         7 ~pv~~~~~l~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~--~~~~~---~--~~---~~~~~~~~~~~~~~~~~c   76 (741)
T KOG3515|consen    7 VPVCESSSLTVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH--GRYAT---I--AD---PTLVTTGDVRDTVAELNC   76 (741)
T ss_pred             CccccCCCCChhhccCCcceeeeecCCCCCCcceEEEecCcccc--ccccc---c--cC---Cceeeecchhhhhhhhhh
Confidence            35555555566889999999999999875 46899999987765  23211   0  11   125555666656679999


Q ss_pred             EEEcCCEEEEE------------------------------e----cCCCCCeeEEEeeCCccCcCC-------------
Q psy15667         81 VAENRAGTCEI------------------------------T----PYDSGPYLIAWFKDGRQIPGR-------------  113 (286)
Q Consensus        81 ~a~n~~g~~~~------------------------------~----~~~~~~~~~~W~~~g~~l~~~-------------  113 (286)
                      +|.|..+....                              .    ....+.+.+.|+.|+......             
T Consensus        77 ~a~ns~~~~~~~~~~l~v~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~g  156 (741)
T KOG3515|consen   77 RAFNSVGMPSRCPMILDVDYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALG  156 (741)
T ss_pred             hhcccccCceecceeeccccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccC
Confidence            99987653211                              1    112234678898887654210             


Q ss_pred             ---CCcceEEEccCCCCCCeeEEEEEEcC---CcceeeeeeEEEEcCCC---ceecCCc-eEEecCCCEEEEeeEee-ec
Q psy15667        114 ---TSSTSLVINPVGREDRGIYQCIARRS---DGDVAQGSAELQLGGLP---YVRLIPK-VTAIDGEGLSIKCPVAG-YP  182 (286)
Q Consensus       114 ---~~~~~l~i~~v~~~d~G~Y~C~a~~~---~g~~~~~~~~l~v~~~~---~~~~~~~-~~~~~g~~~~l~c~~~~-~p  182 (286)
                         .....+.+.....++.|.|+|.|.|.   .+.. .....+.+....   .+....+ ....+|+.+.|.|.+.+ .|
T Consensus       157 ss~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~-~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P  235 (741)
T KOG3515|consen  157 SSYTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSF-AKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNP  235 (741)
T ss_pred             ceeccccceeeEEEEecCCceeEcccccccCccccc-cceeEeecccccccceecchhhcCcccccceEEEEehhhcCCc
Confidence               11244667777789999999999883   2222 112223332211   1111222 34568999999998776 68


Q ss_pred             CCeEEEEEcCCcccc------------------------------------------------------cccccCCCCCC
Q psy15667        183 IEEVHWEKVPPKIES------------------------------------------------------FAFPFDGLPEG  208 (286)
Q Consensus       183 ~~~v~w~~~~~~~~~------------------------------------------------------~~~~~~~~~~g  208 (286)
                      .+..+|.+.......                                                      ...+...+..|
T Consensus       236 ~~~~~w~~~s~~~~~~sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g  315 (741)
T KOG3515|consen  236 SQQQTWYKDSRPQSESSLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSG  315 (741)
T ss_pred             chhhhhccccccchhhhcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccc
Confidence            889999972111000                                                      00012335678


Q ss_pred             CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      ....+.|..+.+.|+..+.|+|+...........-....   .....+........|.|.|+|.|.|.......+...
T Consensus       316 ~s~r~~c~~sss~p~~~i~w~~~~~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~  393 (741)
T KOG3515|consen  316 RSARSSCVSSSSKPPAHIAWYKDTKMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSF  393 (741)
T ss_pred             cccccceeccCCCCccceeeeccCcccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccce
Confidence            999999998889999999999977655433221111110   112234566777889999999999987655554443

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.50  E-value=2.1e-13  Score=92.97  Aligned_cols=76  Identities=25%  Similarity=0.393  Sum_probs=55.3

Q ss_pred             eEEEEEeeecCCCCC--eEEEEeCCeeCCCCC---CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        210 RTRVICGVTHGDPPL--TIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       210 ~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~---~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .+.|.|.+. |.|.|  .+.|+|+|..+....   .+.........+.|.|.+++.+|+|.|+|.|.|.+|....++.|.
T Consensus         2 ~~~L~C~~~-g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   80 (85)
T cd04970           2 SITLQCHAS-HDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLSASADLI   80 (85)
T ss_pred             cEEEEEEEe-cCCCCCeEEEEEECCeEeeccCCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEEEEEEEE
Confidence            456667664 44544  578999998875332   111111112356899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        81 V~   82 (85)
T cd04970          81 VR   82 (85)
T ss_pred             EE
Confidence            84

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.50  E-value=1.7e-13  Score=92.72  Aligned_cols=77  Identities=35%  Similarity=0.582  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      ...|+.+.|.|.+. |.|.|.+.|+|++..+........   ......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         6 ~~~G~~v~L~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~v~   81 (82)
T cd05856           6 RPVGSSVRLKCVAS-GNPRPDITWLKDNKPLTPTEIGES---RKKKWTLSLKNLKPEDSGKYTCHVSNRAGEINATYKVD   81 (82)
T ss_pred             ccCCCeEEEEEEee-EeCCCcEEEEECCcCCcCCcccee---cCceEEEEEccCChhhCEEEEEEEEcCCccEEEEEEEe
Confidence            45677888888764 567788999999987754332211   12245799999999999999999999999998888886


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        82 v   82 (82)
T cd05856          82 V   82 (82)
T ss_pred             C
Confidence            5

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.50  E-value=1.9e-13  Score=90.84  Aligned_cols=71  Identities=32%  Similarity=0.492  Sum_probs=55.0

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCcee--eecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV--SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~--~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .|.|.+..+.|.|.+.|+|+|..+........  .........|.|.+++.+|+|.|+|.|.|.+|....++.
T Consensus         2 ~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           2 VLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKIRNKKKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             EEEEEccCCCCCceEEEEcCCeeccccCCcceEEEEecCceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            57888875588899999999998865443221  111223568999999999999999999999999887764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.49  E-value=1.8e-13  Score=93.53  Aligned_cols=75  Identities=31%  Similarity=0.547  Sum_probs=61.1

Q ss_pred             ccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          8 SFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+.++++.+|+++.|.|.+ .|.|.|.+.|+|++..+.. +.++.+.     ..   ..|.|.+++.+|+|.|+|.|.|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~~-----~~---~~L~I~~~~~~D~G~Y~C~a~N~   73 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRIV-----DD---GNLLIAEARKSDEGTYKCVATNM   73 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEEc-----cC---CEEEEeECCcccCEEEEEEEEec
Confidence            4567789999999999998 7999999999999998875 3444321     11   24889999999999999999998


Q ss_pred             CEEEE
Q psy15667         86 AGTCE   90 (286)
Q Consensus        86 ~g~~~   90 (286)
                      .|...
T Consensus        74 ~G~~~   78 (86)
T cd05724          74 VGERE   78 (86)
T ss_pred             cCcee
Confidence            88654

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.49  E-value=1.6e-13  Score=95.56  Aligned_cols=79  Identities=30%  Similarity=0.443  Sum_probs=61.4

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCe--eEeceEEecccceeEEEEEccc-----ccCCCe
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNR--FVIGQFVSGHGDVISHVNISHV-----TVEDGG   76 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~I~~~-----~~~D~G   76 (286)
                      .|...+.+..+.+|+++.|.|.+.|+|.|.+.|+|||..|.....  +..    ..++    .|.|.++     ..+|+|
T Consensus         1 ~f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g~~l~~~~~~~~~~----~~~~----~l~i~~v~~~~~~~~D~G   72 (95)
T cd05722           1 WFLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDGVLLNLVSDERRQQ----LPNG----SLLITSVVHSKHNKPDEG   72 (95)
T ss_pred             CcEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECCeECccccCcceEE----ccCC----eEEEeeeeccCCCCCcCE
Confidence            366788888999999999999999999999999999999864432  221    1122    2445554     689999


Q ss_pred             EEEEEEEcC-CEEEE
Q psy15667         77 EYACVAENR-AGTCE   90 (286)
Q Consensus        77 ~Y~C~a~n~-~g~~~   90 (286)
                      .|+|.|.|. .|...
T Consensus        73 ~Y~C~a~N~~~G~~~   87 (95)
T cd05722          73 FYQCVAQNDSLGSIV   87 (95)
T ss_pred             EEEEEEECCccCcEE
Confidence            999999999 88764

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.48  E-value=3.9e-13  Score=92.45  Aligned_cols=78  Identities=24%  Similarity=0.492  Sum_probs=54.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|. .+.|++ ++..+....++.+.. ......|.|.++..+|+|.|+|.|.|..|.. ..+..
T Consensus        12 v~~G~~v~l~C~~~-G~P~-~v~W~k~~g~~~~~~~r~~~~~-~g~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~i~   88 (92)
T cd05866          12 LSVGESKFFTCTAI-GEPE-SIDWYNPQGEKIVSSQRVVVQK-EGVRSRLTIYNANIEDAGIYRCQATDAKGQTQEATVV   88 (92)
T ss_pred             EcCCCeEEEEEEEE-EeCC-eEEEEeCCCeEecCCCCEEEEe-CCCeeEEEEecCChHHCEEEEEEEEcCCCcEEEEEEE
Confidence            45566666666653 4555 788887 466665554544332 2234589999999999999999999999985 66666


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        89 l~~   91 (92)
T cd05866          89 LEI   91 (92)
T ss_pred             EEE
Confidence            654

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.48  E-value=1.9e-13  Score=91.07  Aligned_cols=69  Identities=29%  Similarity=0.442  Sum_probs=54.8

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+++.|.|.+.|+|.|.+.|++||..+........ .  ...+   ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g~~~~~~~~~~~-~--~~~~---~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNGVPIEELPPDPR-R--RVDG---GTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECCEECCCCCCcce-E--EccC---CEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            78999999999999999999999998865432211 0  1112   24889999999999999999999887653

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.48  E-value=1.3e-13  Score=91.83  Aligned_cols=67  Identities=24%  Similarity=0.410  Sum_probs=56.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |++...+....+.+|++++|+|.+.+.|. +.+.|+|||..|..+            +   ..|.|.++ .+|+|.|+|+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~~------------~---~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLETT------------T---NSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECCEEeecc------------C---CeEEEeec-ccCCEEeEEE
Confidence            67888999999999999999999999886 469999999887321            1   13779999 9999999999


Q ss_pred             EEcC
Q psy15667         82 AENR   85 (286)
Q Consensus        82 a~n~   85 (286)
                      |.|.
T Consensus        65 a~~~   68 (78)
T cd05752          65 TQGS   68 (78)
T ss_pred             CCCC
Confidence            9874

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.48  E-value=3.4e-13  Score=96.19  Aligned_cols=88  Identities=24%  Similarity=0.328  Sum_probs=64.1

Q ss_pred             CCeeEeccccccc----cCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccc-cCCC
Q psy15667          2 PPILTYSFIEQTL----QPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVT-VEDG   75 (286)
Q Consensus         2 ~p~~~~~~~~~~~----~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~   75 (286)
                      +|.|...+....+    ..|..++|.|.+.|+|.|.+.|++||..|.. +.++.+.....+. .....|.|.++. .+|.
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~-~~~s~L~I~~v~~~~D~   82 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGT-VHTSILTIINVSAALDY   82 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCc-cceeEEEECcCCccCCC
Confidence            6777766653322    2568999999999999999999999999864 4455432211111 112458999997 5999


Q ss_pred             eEEEEEEEcCCEEEE
Q psy15667         76 GEYACVAENRAGTCE   90 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~   90 (286)
                      |.|+|.|.|..|...
T Consensus        83 G~Y~C~A~N~~G~~~   97 (109)
T cd05773          83 ALFTCTAHNSLGEDS   97 (109)
T ss_pred             EEEEEEEEeCCccCc
Confidence            999999999998753

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.47  E-value=5.9e-13  Score=91.62  Aligned_cols=77  Identities=25%  Similarity=0.458  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK  282 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  282 (286)
                      .+.+|+.+.|.|.+. |. .|.+.|+|++..+... ++.+.   .....|.|.+++.+|+|.|.|.|.|.+|.. +..+.
T Consensus        14 ~v~~g~~v~l~C~a~-g~-~p~i~W~kng~~l~~~-~~~~~---~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~S~~~~   87 (91)
T cd05740          14 PPEDNQPVTLTCEAE-GQ-ATYIWWVNNGSLLVPP-RLQLS---NDNRTLTFNNVTRSDTGHYQCEASNEVSNMTSDPYI   87 (91)
T ss_pred             ccccCCcEEEEEEeC-CC-CCEEEEEECCEECCCC-CEEEe---CCCCEEEECcCChhhCEEEEEEEEcCCCCEEeeeEE
Confidence            467888888888875 56 8899999999887543 23222   224579999999999999999999999975 44777


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.|.
T Consensus        88 L~V~   91 (91)
T cd05740          88 LNVN   91 (91)
T ss_pred             EEeC
Confidence            8774

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.46  E-value=7.9e-13  Score=91.27  Aligned_cols=80  Identities=30%  Similarity=0.590  Sum_probs=62.3

Q ss_pred             CeeEeccccccccCC---CcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccc-cCCCe
Q psy15667          3 PILTYSFIEQTLQPG---PAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVT-VEDGG   76 (286)
Q Consensus         3 p~~~~~~~~~~~~~G---~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~G   76 (286)
                      |.|...+.++.+.+|   ++++|.|.+.|+|.|.++|++++..+..  ..++..     ..+    .|.|.++. .+|+|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~~~l~~~~~~~~~~-----~~~----~L~i~~~~~~~d~G   72 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNGTEIDDEPDSRYSL-----VGG----NLVISNPSKAKDAG   72 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECCEECCCCCCCCEEE-----ECC----EEEEecCCccCCCE
Confidence            788888888876554   6799999999999999999999998843  223321     112    37788876 48999


Q ss_pred             EEEEEEEcCCEEEEE
Q psy15667         77 EYACVAENRAGTCEI   91 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~~   91 (286)
                      .|+|.|.|..|...-
T Consensus        73 ~Y~C~a~N~~G~~~S   87 (91)
T cd04967          73 RYQCLASNIVGTVLS   87 (91)
T ss_pred             EEEEEEEcCCCEEEe
Confidence            999999999997643

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.46  E-value=3.1e-13  Score=88.66  Aligned_cols=64  Identities=33%  Similarity=0.618  Sum_probs=50.9

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++|.|.+.|.|.|.+.|+|++..+..+.....     ...   ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~~~~~~~~-----~~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   64 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLSPNRTKKL-----NNN---KTLQLDNVLESDDGEYVCTAENSEGSARH   64 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCCCCceeEE-----cCC---CEEEEcccCHHhCEEEEEEEEcCCCeEEE
Confidence            47999999999999999999987765432111     111   25899999999999999999999997653

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.46  E-value=3.7e-13  Score=89.81  Aligned_cols=64  Identities=28%  Similarity=0.596  Sum_probs=51.3

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      ++|.|.+.|.|.|++.|+|+|.+|..+. ++.+    ....   ..|.|.++..+|+|.|+|.|.|..|...
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~~l~~~~~~~~~----~~~~---~~L~I~~~~~~D~G~Y~C~a~N~~G~~~   65 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGTPLSDGQGNYSV----SSKE---RTLTLRSAGPDDSGLYYCCAHNAFGSVC   65 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCEECCCCCccEEE----eCCC---CEEEEeeCCcccCEEEEEEEEeCCCeEe
Confidence            5799999999999999999999986543 3322    1111   2488999999999999999999988754

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.46  E-value=7e-13  Score=91.63  Aligned_cols=79  Identities=25%  Similarity=0.559  Sum_probs=55.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~  282 (286)
                      +..|+.+.|.|.+. |.| +.+.|++ ++..+....++.+.........|.|.+++.+|+|.|+|.|.|.. +....++.
T Consensus        12 v~~G~~~~l~C~~~-G~p-~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~g~~~~~sv~   89 (92)
T cd04977          12 ISVGESKFFLCQVI-GEP-KDISWFSPNGEKLVTQQQISVVQNDDVRSTLTIYNANIEDAGIYKCVATDAKGTESEATVN   89 (92)
T ss_pred             ECCCCeEEEEEEeE-eeC-CeEEEECCCCCEeccCCCEEEEeCCCCEEEEEEecCCcccCEEEEEEEEcCCCCcceeEEE
Confidence            55677777777665 344 3788886 56555443333333323345689999999999999999999996 55677777


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        90 l~~   92 (92)
T cd04977          90 LKI   92 (92)
T ss_pred             EEC
Confidence            764

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.45  E-value=4.5e-13  Score=90.42  Aligned_cols=36  Identities=31%  Similarity=0.411  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.++..+|+|.|+|.|.|.+|.....+.|+|
T Consensus        46 ~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   81 (81)
T cd05765          46 IGQLVIYNAQPQDAGLYTCTARNSGGLLRANFPLSV   81 (81)
T ss_pred             ccEEEEccCCcccCEEEEEEEecCCceEEEEEEEeC
Confidence            357999999999999999999999999999999986

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.45  E-value=4.5e-13  Score=90.63  Aligned_cols=73  Identities=34%  Similarity=0.560  Sum_probs=58.0

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ..+..|+++.|.|.+.|.|.|.+.|++++..+.........     ..  ...|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~-----~~--~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPTEIGESR-----KK--KWTLSLKNLKPEDSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCCccceec-----Cc--eEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence            35678999999999999999999999999887654332110     11  135899999999999999999999987543

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.45  E-value=1e-12  Score=91.10  Aligned_cols=69  Identities=26%  Similarity=0.483  Sum_probs=52.5

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      +|+.+.|.|.+. |.|.|.++|+|+|..+.......+...   .+.|.|.++. .+|+|.|+|.|.|.+|...+
T Consensus        18 ~g~~v~l~C~~~-G~P~P~i~W~k~g~~l~~~~~~~~~~~---~g~L~i~~~~~~~D~G~Y~C~A~N~~G~~~S   87 (94)
T cd05848          18 DEKKVILNCEAR-GNPVPTYRWLRNGTEIDTESDYRYSLI---DGNLIISNPSEVKDSGRYQCLATNSIGSILS   87 (94)
T ss_pred             CCCEEEEEEEee-ecCCCEEEEEECCeECccCCCceEEee---CCeEEEccCCccCcCEEEEEEEEcCCCeEEe
Confidence            467888888864 788899999999998864433222221   3468898875 69999999999999998754

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.44  E-value=9.5e-13  Score=87.66  Aligned_cols=71  Identities=25%  Similarity=0.478  Sum_probs=53.7

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCC--Cceee-ecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .|.|.+..+.|.+.+.|+|+|+.+....  ...+. ........|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         2 ~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           2 VLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKKKKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             EEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeCCcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            5788876667888999999999885332  11111 11223467999999999999999999999998887764

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.44  E-value=5.2e-13  Score=88.38  Aligned_cols=62  Identities=39%  Similarity=0.663  Sum_probs=50.5

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      ++|.|.+.|+|.|.+.|+||+.++.  .+.++...    ..+    .|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~~~~~~~~~~~~~~----~~g----~L~i~~~~~~D~G~Y~C~a~N~~G~~   64 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFLPVDTTSNGRIKQL----RSG----ALQIENSEESDQGKYECVATNSAGTR   64 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECccCCCCCEEEc----CCc----EEEECCCChhhCEEEEEEEECCCCce
Confidence            4799999999999999999999886  34454321    111    38899999999999999999998864

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.43  E-value=3.9e-13  Score=87.74  Aligned_cols=58  Identities=26%  Similarity=0.456  Sum_probs=47.7

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      +.|.|.+.|.|.|++.|+|||.++..+ .++..      .+.   .|.|.+++.+|+|.|+|.|.|..
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~~~------~~~---~L~I~~v~~~D~G~YtC~a~~~~   59 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRYHV------DGY---SLVIKDVTEEDAGIYTILLGIKQ   59 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEEEe------CCC---EEEECcCCHHHCEEEEEEEEccc
Confidence            368999999999999999999998754 34322      221   48999999999999999999974

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.43  E-value=6.7e-13  Score=91.86  Aligned_cols=78  Identities=24%  Similarity=0.345  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEEeeecC----CCCCeEEEEeCCeeCCCC--CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        205 LPEGARTRVICGVTHG----DPPLTIRWLKDGKPLSPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~----~p~~~~~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                      +.+|+.+.|.|.+...    .|.+.+.|+|++..+...  ....+..   ....|.|.++..+|+|.|+|.+.|..|..+
T Consensus        11 v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~---~~~~L~I~~~~~~DsG~Y~C~~~N~~g~~~   87 (94)
T cd05756          11 VLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ---QKDLLWFLPAALEDSGLYTCVVRNSTYCMK   87 (94)
T ss_pred             EecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee---cCCeEEEccCCcccCeEEEEEEcCCCccEE
Confidence            3456666666655432    567889999998754321  1111211   145799999999999999999999999999


Q ss_pred             eEEEEEE
Q psy15667        279 YSSKLQV  285 (286)
Q Consensus       279 ~~~~L~V  285 (286)
                      .++.|+|
T Consensus        88 ~~~~L~v   94 (94)
T cd05756          88 VSISLTV   94 (94)
T ss_pred             EEEEEEC
Confidence            9999876

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.43  E-value=6e-13  Score=86.84  Aligned_cols=63  Identities=37%  Similarity=0.651  Sum_probs=50.6

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++|.|.+.|.|.|.+.|+|++..++.+ ++.+.     .+   ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~-~~~~~-----~~---~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   63 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGELPKG-RAEIL-----DD---KSLKIRNVTAGDEGSYTCEAENMVGKIEA   63 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccCCCC-cEEEe-----eC---CEEEECcCChhHCEEEEEEEEcCCCcEEE
Confidence            579999999999999999998877543 33221     11   14899999999999999999999887653

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.43  E-value=5.3e-13  Score=90.33  Aligned_cols=69  Identities=20%  Similarity=0.460  Sum_probs=56.2

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .|.++++.+|+++.|.|.+.+ |.+++.|++||.+|..+ .++.+.     .+    .|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~~~-----~~----~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYLLY-----RD----GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEEEE-----CC----cEEEeCCCHHHCEEEEEEEEecc
Confidence            366789999999999999865 67899999999999765 454331     22    37899999999999999998863

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.42  E-value=2.5e-12  Score=91.73  Aligned_cols=79  Identities=25%  Similarity=0.441  Sum_probs=60.8

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-Cceeeec---CCCeeeEEEcccC-CCCCeEEEEEEEecccceeeEE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDL---DSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~---~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      .|..+.|.|.+. |.|++.+.|+|+|..+.... ++.+...   ....+.|.|.++. .+|.|.|+|.|.|.+|....++
T Consensus        22 ~g~~v~L~C~a~-G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G~Y~C~A~N~~G~~~~~i  100 (109)
T cd05773          22 GSSDANLVCQAQ-GVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYALFTCTAHNSLGEDSLDI  100 (109)
T ss_pred             CCCEEEEEEECc-ccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCEEEEEEEEeCCccCcEEE
Confidence            467788888875 78889999999999885432 3332221   1224689999997 6999999999999999999999


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|.|.
T Consensus       101 ~L~~~  105 (109)
T cd05773         101 QLVST  105 (109)
T ss_pred             EEEec
Confidence            99873

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.42  E-value=1.1e-12  Score=87.13  Aligned_cols=70  Identities=31%  Similarity=0.501  Sum_probs=53.2

Q ss_pred             EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++|.|.+.| .|.|.+.|+|||.++....+...... . .......|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~~l~~~~~~~~~~~-~-~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   71 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGKELNRKNKPRNIKI-R-NKKKNSELQINKAKLADSGEYTCVVENILGNDTV   71 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCeeccccCCcceEEE-E-ecCceEEEEEccCCcccCeEEEEEEEEcCCceeE
Confidence            479999999 99999999999999876544321011 1 1112246999999999999999999999987654

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.42  E-value=1.1e-12  Score=89.14  Aligned_cols=70  Identities=23%  Similarity=0.484  Sum_probs=52.6

Q ss_pred             CcEEEEEEeecCCCC--eeEEeeCCEEcCCC---CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         18 PAVSLKCIASGNPTP--DIGWTLDGFELPTN---NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        18 ~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +++.|.|.+.|+|.|  .+.|++||.+|..+   .++...   .... ....|.|.+++..|+|.|+|.|.|..|..+.
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~---~~~~-~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~   75 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRM---EVKE-TIGDLVIVNAQLSHAGTYTCTAQTVVDSASA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEE---Eecc-eEeEEEEccCChhhCeEEEEEEecCCCCEEE
Confidence            578999999999988  57999999988642   233110   1111 1235999999999999999999999886643

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.41  E-value=1.5e-12  Score=86.18  Aligned_cols=67  Identities=34%  Similarity=0.701  Sum_probs=53.8

Q ss_pred             CCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+.+.|.|.+.|.|.|.+.|++ ++..+....++...    ..+    .|.|.++..+|+|.|+|.|.|..|..+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTLVY----DNG----TLDILITTVKDTGSFTCIASNAAGEATA   68 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEEEe----cCC----EEEEEECChhhCEEEEEEEECCCCeEEE
Confidence            7899999999999999999997 67666655554321    111    4889999999999999999999987654

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.40  E-value=2.5e-12  Score=89.53  Aligned_cols=78  Identities=31%  Similarity=0.486  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEccc-----CCCCCeEEEEEEEec-ccce-
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-----SAAHSGEYTCVASNT-AAQA-  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-----~~~d~G~Y~C~a~N~-~g~~-  277 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+............  .+.|.|.++     ..+|+|.|+|.|.|. .|.. 
T Consensus        11 ~~~g~~v~l~C~v~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~--~~~l~i~~v~~~~~~~~D~G~Y~C~a~N~~~G~~~   87 (95)
T cd05722          11 AVRGGPVVLNCSAE-GEPPPKIEWKKDGVLLNLVSDERRQQLP--NGSLLITSVVHSKHNKPDEGFYQCVAQNDSLGSIV   87 (95)
T ss_pred             EcCCCCEEEeeecc-cCCCCEEEEEECCeECccccCcceEEcc--CCeEEEeeeeccCCCCCcCEEEEEEEECCccCcEE
Confidence            44677777777764 6678899999999988654321111111  235667766     689999999999999 9977 


Q ss_pred             eeEEEEEE
Q psy15667        278 RYSSKLQV  285 (286)
Q Consensus       278 ~~~~~L~V  285 (286)
                      +..+.|.|
T Consensus        88 s~~~~l~v   95 (95)
T cd05722          88 SRTARLTV   95 (95)
T ss_pred             EeeeEEeC
Confidence            55777765

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.40  E-value=3.1e-12  Score=88.54  Aligned_cols=87  Identities=26%  Similarity=0.471  Sum_probs=68.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCC-CeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVED-GGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~   77 (286)
                      ||.| ...+.+.+.+|++++|.|.+.+.|+| .|.|..++..|..  +.+|.+.+... .++..+.|.|.++...| .|.
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~-~~g~~S~L~I~~~~~~d~~g~   79 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTST-GSGVLSTLTINNIMEADFQTH   79 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEcc-CCCcEEEEEECCCccccCCcE
Confidence            7888 57778889999999999999888887 5789988877754  46777654322 23455679999998877 799


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |.|.|.|..|.-.
T Consensus        80 Y~C~a~N~~G~d~   92 (98)
T cd05898          80 YNCTAWNSFGSGT   92 (98)
T ss_pred             EEEEEEeCCccce
Confidence            9999999988643

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.40  E-value=1.3e-12  Score=90.04  Aligned_cols=67  Identities=34%  Similarity=0.649  Sum_probs=52.9

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      |++++|.|.+.|+|.|.+.|+|++..+        ....++.+.    ..+    .|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~----~~~----~L~I~~v~~~D~G~Y~C~a~N~~G~   72 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVS----QTG----DLTITNVQRSDVGYYICQTLNVAGS   72 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEEC----CCC----eEEEeeCChhhCEEEEEEEEcCCCc
Confidence            789999999999999999999998653        123344321    111    4899999999999999999999887


Q ss_pred             EEE
Q psy15667         89 CEI   91 (286)
Q Consensus        89 ~~~   91 (286)
                      ...
T Consensus        73 ~~~   75 (90)
T cd05726          73 ILT   75 (90)
T ss_pred             eEE
Confidence            643

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=2.1e-12  Score=86.14  Aligned_cols=66  Identities=30%  Similarity=0.532  Sum_probs=48.6

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCC----CCCeEEEEEEEecccceee
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~g~~~~  279 (286)
                      .|.|.+. |.|.|+++|+|+|..+.......+... ...+.|.|..+..    +|+|.|+|.|.|.+|...+
T Consensus         2 ~l~C~~~-G~P~P~v~W~k~g~~l~~~~~~~~~~~-~~~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           2 VIKCEAK-GNPPPTFSWTRNGTHFDPEKDPRVTMK-PDSGTLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             EEEeeCc-ccCCCeEEEEECCeECCCCCCCCEEEe-CCCCEEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            5778764 788999999999998754332222222 2256788988864    7999999999999997654

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.40  E-value=1.2e-12  Score=87.26  Aligned_cols=64  Identities=31%  Similarity=0.631  Sum_probs=47.8

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccc----cCCCeEEEEEEEcCCEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVT----VEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~----~~D~G~Y~C~a~n~~g~~~   90 (286)
                      ++|.|.+.|+|.|+|+|+|||..|...  .++..    ....+   .|.|.++.    .+|+|.|+|.|.|..|...
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~l~~~~~~~~~~----~~~~g---~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~   70 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTHFDPEKDPRVTM----KPDSG---TLVIDNMNGGRAEDYEGEYQCYASNELGTAI   70 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCCCCCCEEE----eCCCC---EEEEeccCCCCCcCCCEEEEEEEEcCCCcEE
Confidence            479999999999999999999988643  23321    11112   36677764    3789999999999998754

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.40  E-value=1.2e-12  Score=86.88  Aligned_cols=65  Identities=38%  Similarity=0.705  Sum_probs=49.1

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEc-CC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFEL-PT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l-~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++|.|.+.|.|.|+++|+|++... +.  ..++.+    ...+.   .|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~----~~~~~---~L~I~~~~~~D~G~Y~C~A~N~~G~~~~   68 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHV----MPEDD---VFFIVDVKIEDTGVYSCTAQNTAGSISA   68 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEE----ecCCC---EEEEeeCCcccCEEEEEEEEcCCCEEEe
Confidence            479999999999999999998642 22  233322    11122   4889999999999999999999987643

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.39  E-value=1.9e-12  Score=84.48  Aligned_cols=67  Identities=24%  Similarity=0.320  Sum_probs=49.3

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .|.|.+. |.|+|.+.|+|+|.++..... .+.. .  ...|.|.+++.+|+|.|+|.|.|..........+
T Consensus         2 ~l~c~v~-g~P~P~v~W~kdg~~l~~~~~-~~~~-~--~~~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           2 RLTPKVK-AFPAPEVIWLKDGLPAAEKCS-RYHV-D--GYSLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             eEEeeEE-EcCCCeEEEEECCEECCCCCc-EEEe-C--CCEEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            5677764 788899999999998865422 1111 1  3479999999999999999999987655444433

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.39  E-value=4.7e-12  Score=88.92  Aligned_cols=80  Identities=26%  Similarity=0.502  Sum_probs=53.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC----CCceeeecCCCeeeEEE--cccCCCCCeEEEEEEEecccc-e
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSI--NSVSAAHSGEYTCVASNTAAQ-A  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~----~~~~~~~~~~~~~~L~i--~~v~~~d~G~Y~C~a~N~~g~-~  277 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+...    ....+....+....+.|  ..+..+|+|.|+|.|.|.+|. .
T Consensus        13 v~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y~C~a~N~~G~~~   91 (100)
T cd07693          13 VSKGDPATLNCKAE-GRPTPTIQWLKNGQPLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVYVCVAHNSLGEAV   91 (100)
T ss_pred             EcCCCeEEEEeeCC-cCCCCEEEEEECCEECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEEEEEEEcccccee
Confidence            55777777777664 6788889999999887651    11111111111112222  234789999999999999998 7


Q ss_pred             eeEEEEEE
Q psy15667        278 RYSSKLQV  285 (286)
Q Consensus       278 ~~~~~L~V  285 (286)
                      +..+.|.|
T Consensus        92 s~~~~l~v   99 (100)
T cd07693          92 SRNASLEV   99 (100)
T ss_pred             cceEEEEe
Confidence            77887776

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.39  E-value=4.8e-12  Score=87.82  Aligned_cols=73  Identities=23%  Similarity=0.405  Sum_probs=53.4

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee-EEEE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL  283 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~-~~~L  283 (286)
                      .|+.+.|.|.+. |.|.|.++|+++|..+.......+...   .+.|.|.++. .+|+|.|+|.|.|.+|...+ .+.|
T Consensus        18 ~g~~v~l~C~a~-g~P~p~i~W~~~g~~l~~~~~~~~~~~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          18 PEEKVTLGCRAR-ASPPATYRWKMNGTEIKFAPESRYTLV---AGNLVINNPQKARDAGSYQCLAINRCGTVVSREANL   92 (94)
T ss_pred             CCCeEEEEeEce-eCCCCEEEEEECCEECccCCCceEEEE---CCeEEEccCCccCcCEEEEEEEEcCcCcEEEEEEEE
Confidence            356788888874 788899999999998864322222221   3468887755 69999999999999997754 4444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.39  E-value=1.6e-12  Score=89.46  Aligned_cols=74  Identities=20%  Similarity=0.474  Sum_probs=50.5

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCC----EEcCCCCe-e-EeceE--EecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDG----FELPTNNR-F-VIGQF--VSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~----~~l~~~~~-~-~~~~~--~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      |+.++|.|.+.|.|.|+|+|+|++    ..+..+.. + .....  .....+....|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            789999999999999999999964    33322111 1 10000  0000011225889999999999999999999886


Q ss_pred             EE
Q psy15667         89 CE   90 (286)
Q Consensus        89 ~~   90 (286)
                      ..
T Consensus        81 ~~   82 (90)
T cd04974          81 SH   82 (90)
T ss_pred             cc
Confidence            53

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.39  E-value=1.2e-12  Score=85.98  Aligned_cols=64  Identities=39%  Similarity=0.714  Sum_probs=50.5

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.|.|.+.|.|.|.+.|++++..+..+. ...    ...+   ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~~~~-~~~----~~~~---~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   64 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELPADR-TKF----ENFN---KTLKIDNVSEEDDGEYRCTASNSLGSARH   64 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECCCCc-eeE----ecCC---CEEEECCCCHHHCEEEEEEEEeCCceEEE
Confidence            4799999999999999999998876432 211    1111   25899999999999999999999987643

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.39  E-value=4.1e-12  Score=87.82  Aligned_cols=70  Identities=21%  Similarity=0.394  Sum_probs=53.2

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee-EEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY-SSKL  283 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~-~~~L  283 (286)
                      |..+.|.|.+. |.|.|.++|+|++..+... .++.+  .   ++.|.|.++. .+|+|.|+|.|.|.+|.... .++|
T Consensus        19 ~~~v~l~C~a~-G~P~P~i~W~k~~~~i~~~~~~~~~--~---~g~L~I~~~~~~~D~G~Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          19 EGKVSVNCRAR-ANPFPIYKWRKNNLDIDLTNDRYSM--V---GGNLVINNPDKYKDAGRYVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             CCeEEEeCcCc-cCCCCEEEEEECCEEccCCCCeEEE--E---CCEEEECcCCcCCCCEEEEEEEEeCcceEEEccEEE
Confidence            45788888874 7899999999999887533 22222  1   3578999885 69999999999999997744 5555

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.38  E-value=2.1e-12  Score=88.90  Aligned_cols=74  Identities=24%  Similarity=0.475  Sum_probs=51.6

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeC----CEEcCCCCeeEeceEEe----cccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLD----GFELPTNNRFVIGQFVS----GHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~----~~~l~~~~~~~~~~~~~----~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      |+++.|.|.+.|+|.|.+.|+|+    +..+..+.+........    ........|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            78999999999999999999984    44443332211100000    00111236999999999999999999999886


Q ss_pred             EE
Q psy15667         89 CE   90 (286)
Q Consensus        89 ~~   90 (286)
                      ..
T Consensus        81 ~~   82 (90)
T cd05858          81 SH   82 (90)
T ss_pred             cc
Confidence            53

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.38  E-value=7.8e-12  Score=85.03  Aligned_cols=80  Identities=33%  Similarity=0.606  Sum_probs=60.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +..|+.+.|.|.+. +.|.+.+.|+|++..+.................|.|.++..+|+|.|.|.|.|..|....++.|.
T Consensus         6 ~~~G~~~~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~~~~l~   84 (85)
T cd05729           6 VPAGSTVRLKCPAS-GNPRPTITWLKDGKPFKKEHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENKYGSINHTYKVD   84 (85)
T ss_pred             ecCCCcEEEEEEcC-CCCCCeEEEEECCEECcccCceeEEEccCcEEEEEEeECCcccCEEEEEEEEECCceEEEEEEEe
Confidence            45678888888765 56778899999998876443322222122245789999999999999999999999998888886


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        85 v   85 (85)
T cd05729          85 V   85 (85)
T ss_pred             C
Confidence            5

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.38  E-value=1.1e-11  Score=86.73  Aligned_cols=78  Identities=23%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCC--CCceeeecC---CCeeeEEEcccCCCC-CeEEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR--FPVNVSDLD---SFSSLLSINSVSAAH-SGEYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~--~~~~~~~~~---~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~  277 (286)
                      +.+|+.+.|.|.+. |.|.| .+.|++++..+...  .++.+....   .....|.|.++..+| .|.|+|.|.|..|..
T Consensus        13 ~~~G~~v~L~C~~~-g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y~C~A~N~~G~~   91 (98)
T cd05758          13 AILGDKGRVECFIF-STPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSYNCTAWNSFGSG   91 (98)
T ss_pred             EeCCCcEEEEEEEc-ccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeEEEEEEcCCCcc
Confidence            34566666666654 55666 58888888877543  234333221   223579999999955 899999999999998


Q ss_pred             eeEEEE
Q psy15667        278 RYSSKL  283 (286)
Q Consensus       278 ~~~~~L  283 (286)
                      ...+.|
T Consensus        92 ~~~~~L   97 (98)
T cd05758          92 TAIISL   97 (98)
T ss_pred             cEEEEe
Confidence            888776

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.38  E-value=2.6e-12  Score=87.28  Aligned_cols=74  Identities=24%  Similarity=0.418  Sum_probs=52.1

Q ss_pred             CCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         17 GPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        17 G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      |++++|.|.+.|.  |.|.+.|.+++..+.....................|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~   76 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQK   76 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceE
Confidence            7899999999999  8899999988765532111000000001112234699999999999999999999887654

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.37  E-value=2.5e-12  Score=88.49  Aligned_cols=74  Identities=22%  Similarity=0.343  Sum_probs=53.5

Q ss_pred             CCCeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        207 EGARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       207 ~g~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      +|....|.|....    ..|.|.+.|+|+++++...... +.    .+..|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         9 ~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~-~~----~~~~L~I~~v~~~DsG~YtC~~~n~~~~~~~~~t   83 (92)
T cd05757           9 STKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKR-FV----KGSKLLIQNVTEEDAGNYTCKLTFTHNGKQYNVT   83 (92)
T ss_pred             eccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccE-Ee----cCCEEEEeeCChhhCEEEEEEEEecCCCEEEEEE
Confidence            4444555554322    2367899999999998654332 22    2568999999999999999999999887777766


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      +++
T Consensus        84 ~t~   86 (92)
T cd05757          84 RTI   86 (92)
T ss_pred             EEE
Confidence            554

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.37  E-value=3.2e-12  Score=86.84  Aligned_cols=36  Identities=36%  Similarity=0.566  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus        48 ~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~v~v   83 (84)
T cd05742          48 SSTLTIPNATLKDSGTYTCAASSGTMDQKESTKVNI   83 (84)
T ss_pred             EEEEEECCCChhhCEEEEEEEccCCCceEEEEEEEE
Confidence            568999999999999999999999999999999876

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.37  E-value=3.2e-12  Score=85.11  Aligned_cols=65  Identities=23%  Similarity=0.528  Sum_probs=46.8

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEccccc----CCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTV----EDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~----~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.|.|.+.|+|.|+|+|+|||.+|....  ++.+    ...++   .|.|..+..    .|.|.|+|.|.|..|....
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~~~~~~~~~----~~~~g---~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDIDKDPKVTM----KPNTG---TLVINIMNGEKAEAYEGVYQCTARNERGAAVS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCCcCCCCEEE----eCCCc---eEEEeccccCCCCCCCEEEEEEEEcCCCeEEe
Confidence            5799999999999999999999874332  2221    11122   355665553    4789999999999997653

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.37  E-value=3.3e-12  Score=86.99  Aligned_cols=72  Identities=28%  Similarity=0.550  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+..+.|.+.+.|++++..+....    .   ...+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~----~---~~~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l   84 (85)
T cd05754          13 VRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSRA----M---DFNGILTIRNVQLSDAGTYVCTGSNMLDTDEATATL   84 (85)
T ss_pred             EcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCcc----c---ccCCEEEECCCCHHHCEEEEEEEeccCCeEeEEEEE
Confidence            56777777777765556778899999887653221    0   124589999999999999999999999999998877

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.36  E-value=7.8e-12  Score=83.25  Aligned_cols=67  Identities=24%  Similarity=0.437  Sum_probs=47.6

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCC----CCeEEEEEEEecccceeeE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA----HSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~----d~G~Y~C~a~N~~g~~~~~  280 (286)
                      .|.|.+ .|.|.|+++|+|+|..+.......+... ...++|.|..+..+    |.|.|+|.|.|.+|...+.
T Consensus         2 ~l~C~a-~G~P~P~i~W~k~g~~l~~~~~~~~~~~-~~~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05874           2 VIQCEA-KGKPPPSFSWTRNGTHFDIDKDPKVTMK-PNTGTLVINIMNGEKAEAYEGVYQCTARNERGAAVSN   72 (77)
T ss_pred             EEEeeC-cccCCCeEEEEECCeECCCcCCCCEEEe-CCCceEEEeccccCCCCCCCEEEEEEEEcCCCeEEee
Confidence            577876 4789999999999988743322222221 22467888887753    7899999999999986553

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.35  E-value=6.6e-12  Score=84.20  Aligned_cols=69  Identities=19%  Similarity=0.439  Sum_probs=49.6

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee-EEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~-~~~  282 (286)
                      +.+|+.+.|.|.+ .|.|.| .|.|+|+|..+...  ..     ...+.|.|..+  .|+|.|.|.|.|.+|...+ .++
T Consensus        10 v~~G~~v~l~C~a-~G~P~P~~I~W~k~g~~l~~~--~~-----~~~s~L~i~~~--~d~g~Y~C~A~N~~G~~~s~~a~   79 (81)
T cd05749          10 VTANTPFNLTCQA-VGPPEPVEILWWQGGSPLGDP--PA-----PSPSVLNVPGL--NETSKFSCEAHNAKGVTTSRTGT   79 (81)
T ss_pred             EcCCCCEEEEEEe-eeecCCeEEEEEECCEECCCC--CC-----CCCCEEEEccc--cCCeEEEEEEEeccCcEEeeeEE
Confidence            5567777777765 477777 69999999887531  11     12357888887  5889999999999996654 444


Q ss_pred             E
Q psy15667        283 L  283 (286)
Q Consensus       283 L  283 (286)
                      |
T Consensus        80 ~   80 (81)
T cd05749          80 V   80 (81)
T ss_pred             e
Confidence            4

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.35  E-value=5e-12  Score=84.18  Aligned_cols=65  Identities=29%  Similarity=0.544  Sum_probs=47.8

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccc----cCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVT----VEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~----~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.|.|.+.|+|.|.|+|+|||..+.  .+.++.+    ...++   .|.|..+.    .+|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~----~~~~~---~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM----RRRSG---TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE----eCCCc---eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            4799999999999999999998764  3444432    11122   36677653    24699999999999997653

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.35  E-value=2.7e-12  Score=88.79  Aligned_cols=73  Identities=22%  Similarity=0.365  Sum_probs=57.5

Q ss_pred             ccccccCCCcEEEEEEeec-----CCCCeeEEeeCCEEcCC----CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASG-----NPTPDIGWTLDGFELPT----NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g-----~p~p~v~W~~~~~~l~~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +.+.+.+|+.+.|.|.+.|     .|.|.|.|+|++..+..    +.|+.      ..+.   .|.|.++..+|+|.|+|
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~------~~~~---~L~I~~~~~~DsG~Y~C   77 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMH------QQKD---LLWFLPAALEDSGLYTC   77 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceee------ecCC---eEEEccCCcccCeEEEE
Confidence            4677889999999999999     68999999999876532    12221      1222   48899999999999999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .+.|..|..+.
T Consensus        78 ~~~N~~g~~~~   88 (94)
T cd05756          78 VVRNSTYCMKV   88 (94)
T ss_pred             EEcCCCccEEE
Confidence            99998876554

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.34  E-value=7.1e-12  Score=85.34  Aligned_cols=69  Identities=19%  Similarity=0.472  Sum_probs=50.8

Q ss_pred             CcEEEEEEeecCCCC--eeEEeeCCEEcCCCC---eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         18 PAVSLKCIASGNPTP--DIGWTLDGFELPTNN---RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        18 ~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      ++++|.|.+.|+|.|  .+.|++||..|..+.   ++..  ......  ...|.|.+++.+|+|.|+|.|.|..|..+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~--~~~~~~--~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRR--VGGKDS--NGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEE--Eecccc--cceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            578999999999988  568999999886322   2211  000011  12589999999999999999999887654

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.33  E-value=5.3e-12  Score=84.04  Aligned_cols=66  Identities=36%  Similarity=0.684  Sum_probs=50.8

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +.|.|.+.|.|.|.+.|+|++..|..+.+.....  ...+   ..|.|.++..+|+|.|+|.|.|..|..+
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~~l~~~~~~~~~~--~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~   66 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGMDITPKLSKQLTL--IANG---SELHISNVRYEDTGAYTCIAKNEAGVDE   66 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCEECCCCCCccEEE--eCCC---CEEEECcCCcccCEEEEEEEEcCCCCcc
Confidence            4689999999999999999999886543221111  1122   2488999999999999999999988654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.33  E-value=1.2e-11  Score=82.35  Aligned_cols=67  Identities=28%  Similarity=0.409  Sum_probs=46.8

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCC----CCCeEEEEEEEecccceeeE
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA----AHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~----~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      .|.|.+. |.|.|.++|+|+|..+.......+... ..++.|.|..+..    +|+|.|+|.|.|..|.+...
T Consensus         2 ~l~C~~~-G~P~P~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~   72 (77)
T cd05875           2 IIECEAK-GNPVPTFQWTRNGKFFNVAKDPRVSMR-RRSGTLVIDFSGGGRPEDYEGEYQCFARNNLGTALSN   72 (77)
T ss_pred             EEEEecc-ccCCCEEEEEECCEEccCcCCCcEEEe-CCCceEEEeccCCCCCCCCCEEEEEEEEeccceEEEE
Confidence            5778775 788999999999987642222222221 1246788987642    46999999999999976554

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.32  E-value=8.1e-12  Score=84.23  Aligned_cols=70  Identities=19%  Similarity=0.472  Sum_probs=51.2

Q ss_pred             CcEEEEEEeecC--CCCeeEEeeCCEEcC--CC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         18 PAVSLKCIASGN--PTPDIGWTLDGFELP--TN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        18 ~~~~l~C~~~g~--p~p~v~W~~~~~~l~--~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +++.|.|.+.++  +.+.+.|++||++|.  .+ .+|..   ..+. .....|.|.+++..|+|.|+|.|.|..+..+.
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~---~~~~-~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFER---VGGQ-DSAGDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEE---eccC-CCCCcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            578999999874  477899999999996  22 24432   1110 01124899999999999999999998876543

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.32  E-value=5.6e-11  Score=88.80  Aligned_cols=62  Identities=26%  Similarity=0.411  Sum_probs=42.7

Q ss_pred             eEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCc-eEEecCCCEEEEeeEee
Q psy15667        118 SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAG  180 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~-~~~~~g~~~~l~c~~~~  180 (286)
                      +|.|.+++.+|+|.|.|.+.+..+.. ...+.|.+..+|.+...+. .....|..+.|.|.+.|
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g   64 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQA-QQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAG   64 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcce-eeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECC
Confidence            68999999999999999999876664 4567888877666544332 12224555555555554

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.32  E-value=9.7e-12  Score=83.40  Aligned_cols=36  Identities=33%  Similarity=0.374  Sum_probs=30.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V  285 (286)
                      ++.|.|.++..+|+|.|+|.|.|.+|.. +.++.|+|
T Consensus        43 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~~~l~~   79 (79)
T cd05734          43 NGSLLIKHVLEEDSGYYLCKVSNDVGADASKSMVLTV   79 (79)
T ss_pred             CCeEEECcCCcccCEEEEEEEEeCCCCCCceEEEEeC
Confidence            4679999999999999999999999976 66666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.32  E-value=1.1e-11  Score=83.49  Aligned_cols=71  Identities=30%  Similarity=0.563  Sum_probs=50.1

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCE---Ec-CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGF---EL-PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~---~l-~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+++.|.|.+.|.|.|.+.|+|++.   .+ .....+. ..... ..  ...|.|.++..+|+|.|.|.|.|..|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~-~~~~~-~~--~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVR-GNVVV-TN--IGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCccc-CCEEE-cc--ccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            7899999999999999999999742   11 1111110 00000 11  125899999999999999999999987653

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.31  E-value=1.7e-11  Score=84.79  Aligned_cols=72  Identities=24%  Similarity=0.403  Sum_probs=54.8

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ..++++.+|+++.|.|.+.+.|.|.+.|++++..+        ..+.|+.+..    .......|.|.+++.+|+|.|+|
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~nV~~~D~G~YtC   79 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVK----STPTELIISISNVQLSDEGEYTC   79 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEe----CCCceEEEEECCCCcccCEEEEE
Confidence            46789999999999999999999999999877532        2334443211    11112369999999999999999


Q ss_pred             EEEc
Q psy15667         81 VAEN   84 (286)
Q Consensus        81 ~a~n   84 (286)
                      .+..
T Consensus        80 ~~~t   83 (95)
T cd05882          80 SIFT   83 (95)
T ss_pred             EEEe
Confidence            9976

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.31  E-value=1e-11  Score=84.55  Aligned_cols=74  Identities=30%  Similarity=0.479  Sum_probs=58.1

Q ss_pred             eccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..+....+.+|++++|.|.+.+ .|.+.+.|++++..++..  ..     . .+   ..|.|.+++.+|+|.|.|.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~--~~-----~-~~---~~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLPSR--AM-----D-FN---GILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCCCc--cc-----c-cC---CEEEECCCCHHHCEEEEEEEecc
Confidence            3455668999999999999875 788999999998776432  11     0 11   14889999999999999999999


Q ss_pred             CEEEEE
Q psy15667         86 AGTCEI   91 (286)
Q Consensus        86 ~g~~~~   91 (286)
                      .|....
T Consensus        75 ~g~~~~   80 (85)
T cd05754          75 LDTDEA   80 (85)
T ss_pred             CCeEeE
Confidence            887653

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.30  E-value=5.2e-11  Score=82.42  Aligned_cols=90  Identities=21%  Similarity=0.366  Sum_probs=54.1

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      +..+.+|+++.|.|.+.+.|.|.+.|.+....+..                     .+.    ..+.+++       ++.
T Consensus         6 ~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~---------------------~~~----~~~~~~~-------r~~   53 (95)
T cd05882           6 DETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLY---------------------FGE----KRALRDN-------RIQ   53 (95)
T ss_pred             cEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEE---------------------eCC----eEEEeCC-------eEE
Confidence            45667788888888888777777777664321100                     000    0112221       222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +.........|.|.++..+|+|.|+|.+.. .-.....+.|+|
T Consensus        54 ~~~~~~~~~~L~I~nV~~~D~G~YtC~~~t-~~~~~~~~~~~v   95 (95)
T cd05882          54 LVKSTPTELIISISNVQLSDEGEYTCSIFT-MPVRTAKATVTV   95 (95)
T ss_pred             EEeCCCceEEEEECCCCcccCEEEEEEEEe-eccccEEEEEEC
Confidence            222222346899999999999999999998 334455555654

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.30  E-value=7.4e-12  Score=83.38  Aligned_cols=68  Identities=21%  Similarity=0.421  Sum_probs=49.4

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+...+.+..+.|+|+|..+..           ....|.|.++ .+|+|.|+|.|.|.  ..+..+.|
T Consensus        11 ~v~~G~~V~L~C~~~~~p~~~~~~W~kng~~l~~-----------~~~~l~i~~~-~~dsG~Y~C~a~~~--~~S~~v~l   76 (78)
T cd05752          11 TIFQGEKVTLTCNGFNSPEQNSTQWYHNGKLLET-----------TTNSYRIRAA-NNDSGEYRCQTQGS--SLSDPVHL   76 (78)
T ss_pred             EeeCCCCEEEEEeCCCCCCCccEEEEECCEEeec-----------cCCeEEEeec-ccCCEEeEEECCCC--cCCCCEEE
Confidence            4567788888887654333457999999987632           1357899999 99999999999986  44444555


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      +|
T Consensus        77 ~V   78 (78)
T cd05752          77 EV   78 (78)
T ss_pred             eC
Confidence            44

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.29  E-value=3e-11  Score=83.35  Aligned_cols=69  Identities=29%  Similarity=0.511  Sum_probs=50.9

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceee
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      .|..+.|.|.+. |.|.|.++|+|++..+.......+...   .+.|.|.++. .+|+|.|+|.|.|.+|...+
T Consensus        18 ~~~~~~l~C~~~-g~p~p~i~W~k~~~~l~~~~~~~~~~~---~~~L~i~~~~~~~d~G~Y~C~a~N~~G~~~S   87 (91)
T cd04967          18 DEGKVSLNCRAR-GSPPPTYRWLMNGTEIDDEPDSRYSLV---GGNLVISNPSKAKDAGRYQCLASNIVGTVLS   87 (91)
T ss_pred             CCCEEEEEEeee-EcCCCEEEEEECCEECCCCCCCCEEEE---CCEEEEecCCccCCCEEEEEEEEcCCCEEEe
Confidence            346688888874 678889999999998843322222221   3468898877 59999999999999997654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.28  E-value=2.3e-11  Score=80.91  Aligned_cols=67  Identities=25%  Similarity=0.544  Sum_probs=49.9

Q ss_pred             EEEEEEeec-CCCCeeEEeeCCEEcCCCC----eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         20 VSLKCIASG-NPTPDIGWTLDGFELPTNN----RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++|+|.+.+ .|.+.+.|+++|++|....    ++.+.     .......|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~-----~~~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~   72 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIR-----KKKKSSELQISKASLADNGEYKCMVSSKLGNDSV   72 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEE-----eCCcEEEEEECcCCcccCEEEEEEEEeCCCceeE
Confidence            479999875 6889999999999886432    22211     1112245899999999999999999999886543

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.28  E-value=5.3e-11  Score=80.88  Aligned_cols=75  Identities=32%  Similarity=0.547  Sum_probs=58.6

Q ss_pred             cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      .+.+|+.+.|.|.+.+.|.+.+.|++++..+..+..+....    .......|.|.++..+|+|.|.|.+.|..|..+.
T Consensus         5 ~~~~G~~~~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           5 AVPAGSTVRLKCPASGNPRPTITWLKDGKPFKKEHRIGGYK----VRKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             EecCCCcEEEEEEcCCCCCCeEEEEECCEECcccCceeEEE----ccCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            46789999999999999999999999999886554432211    1112235889999999999999999999887543

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.27  E-value=3.3e-11  Score=96.90  Aligned_cols=128  Identities=20%  Similarity=0.346  Sum_probs=88.9

Q ss_pred             cccccccCCCcEEEEEEeecCC-----------CCeeEEeeCCEEc--C-CCCee-----EeceEEecccceeEEEEEcc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNP-----------TPDIGWTLDGFEL--P-TNNRF-----VIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p-----------~p~v~W~~~~~~l--~-~~~~~-----~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +....+.+|+++.|.|.+.+.|           .+.|.|+|++...  . .+.+.     ...+. ..++   ..|.|.+
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~-~~r~---~~L~I~~  104 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEI-GDRS---ENLWIGN  104 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCccccccccccce-ecCC---CeEEECC
Confidence            3556789999999999987754           3489999987542  1 11110     00000 0111   2489999


Q ss_pred             cccCCCeEEEEEEEcCCEEEEE-------------------------ecCC-----CCCeeEEEeeCCccCcCC------
Q psy15667         70 VTVEDGGEYACVAENRAGTCEI-------------------------TPYD-----SGPYLIAWFKDGRQIPGR------  113 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~~g~~~~-------------------------~~~~-----~~~~~~~W~~~g~~l~~~------  113 (286)
                      ++.+|+|.|+|+|.|..+..+.                         ....     .+.+.++|+|||+++...      
T Consensus       105 v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyKng~~l~~~~r~~~~  184 (227)
T PHA02826        105 VINIDEGIYICTISSGNICEESTIRLTFDSGTINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYKNGNIVLYTDRIQLR  184 (227)
T ss_pred             CChHHCEEEEEEEEECCcceEEEEEEEEecCCccceEecCCCEEEEeeCCCCccccCCCceEEEEECCEECCCCCCEEEe
Confidence            9999999999999997653211                         0110     124789999999988532      


Q ss_pred             CCcceEEEccCCCCCCeeEEEEEEcCC
Q psy15667        114 TSSTSLVINPVGREDRGIYQCIARRSD  140 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~  140 (286)
                      .....|.|.++..+|+|.|+|.|...+
T Consensus       185 ~~~~~L~I~~V~~~DsG~YtC~a~~~~  211 (227)
T PHA02826        185 NNNSTLVIKSATHDDSGIYTCNLRFNK  211 (227)
T ss_pred             CCCCEEEECcCCHHhCEEEEEEEEEeE
Confidence            123579999999999999999998754

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.27  E-value=5e-11  Score=80.79  Aligned_cols=70  Identities=29%  Similarity=0.538  Sum_probs=48.9

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      |++++|.|.+.++|.+.+.|.++++......... .............|.|.+++.+|+|.|.|.|.|..+
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~   70 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPEV-EEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQ   70 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceEE-EEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECcc
Confidence            8999999999999999999998776432111000 000001112235699999999999999999998653

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.26  E-value=2.8e-11  Score=83.95  Aligned_cols=75  Identities=20%  Similarity=0.306  Sum_probs=54.9

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCC--------EEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--------FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--------~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ...++++.+|++++|.|.+.+.|.+.+.|++.+        .....+.|+....    ......+|.|.+++.+|+|.|+
T Consensus         3 ~~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~----~~~~~~sL~I~~v~~~DsG~Y~   78 (95)
T cd07701           3 LTQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVR----ASWHELSISISDVSLSDEGQYT   78 (95)
T ss_pred             ccceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEE----CCCCcEEEEECcCCcccCEEEE
Confidence            345678999999999999999999999998632        2222345554311    1111235999999999999999


Q ss_pred             EEEEcCC
Q psy15667         80 CVAENRA   86 (286)
Q Consensus        80 C~a~n~~   86 (286)
                      |.+.+..
T Consensus        79 C~~~t~~   85 (95)
T cd07701          79 CSLFTMP   85 (95)
T ss_pred             EEeEeec
Confidence            9998743

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.26  E-value=6.8e-11  Score=81.87  Aligned_cols=79  Identities=25%  Similarity=0.344  Sum_probs=58.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC--CCceeeec---CCCeeeEEEcccCCCC-CeEEEEEEEeccccee
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR--FPVNVSDL---DSFSSLLSINSVSAAH-SGEYTCVASNTAAQAR  278 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~--~~~~~~~~---~~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~~  278 (286)
                      +.+|+.+.|.|.+...+++..|.|.+++..+...  .++.+...   .....+|.|.++..+| .|.|.|.|.|..|+..
T Consensus        13 ~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y~C~a~N~~G~d~   92 (98)
T cd05898          13 AVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHYNCTAWNSFGSGT   92 (98)
T ss_pred             EeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEEEEEEEeCCccce
Confidence            4567777777776555666678888888776543  34544432   2457789999998877 7999999999999998


Q ss_pred             eEEEE
Q psy15667        279 YSSKL  283 (286)
Q Consensus       279 ~~~~L  283 (286)
                      ...+|
T Consensus        93 ~~i~L   97 (98)
T cd05898          93 AIIQL   97 (98)
T ss_pred             EEEEe
Confidence            87776

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.26  E-value=8e-11  Score=79.80  Aligned_cols=77  Identities=25%  Similarity=0.456  Sum_probs=46.7

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc--eee-ecCCCeeeEEEcccCCCCCeEEEEEEEeccc--ceeeEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV--NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAA--QARYSSK  282 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~--~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g--~~~~~~~  282 (286)
                      |+.+.|.|.+. +.|.+.+.|.+.++........  ... ........|.|.+++.+|+|.|+|.|.|..+  ....++.
T Consensus         1 Ge~~~l~C~~~-~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQ-GNEVVDFSWTYPGKDIGKGIPEVEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEE-CCCccEEEEEECCccCCCCceEEEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            34455555543 3455666666655432111000  000 0111256899999999999999999999876  6677777


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |+|
T Consensus        80 i~V   82 (84)
T cd05861          80 ITV   82 (84)
T ss_pred             EEE
Confidence            766

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.25  E-value=1.7e-11  Score=84.20  Aligned_cols=71  Identities=27%  Similarity=0.396  Sum_probs=55.4

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      .+.+|..+.|.|....|.|.+.+.|++++..+  ..+.+..+..   ..+.|.|.+|+.+|+|.|+|.|+|.++..
T Consensus        14 ~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A~n~~~~~   86 (96)
T cd05727          14 KVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFVSSPSSTK   86 (96)
T ss_pred             eeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCCcEEEeecCHhhCceeEEEEEecccCC
Confidence            36678888888888888999999999998754  2233332222   25689999999999999999999987654

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.25  E-value=2.6e-11  Score=81.91  Aligned_cols=71  Identities=18%  Similarity=0.311  Sum_probs=55.6

Q ss_pred             EeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+.....++.+|++++|.|.+.+ .|.+.+.|+|+|..+....          ..   ..|.|.+++.+|+|.|+|.|.+
T Consensus         3 ~l~~p~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~~----------~~---~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753           3 LLQVPSRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYSH----------SN---SNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             EEECCcceecCCCCEEEEeeCCCCCcceEEEEEECCeEccccC----------CC---ceEEECccCHHHCEEEEEEEEe
Confidence            44556668999999999999864 5677899999998764211          01   2488999999999999999999


Q ss_pred             CCEEE
Q psy15667         85 RAGTC   89 (286)
Q Consensus        85 ~~g~~   89 (286)
                      ..+..
T Consensus        70 ~~~~~   74 (83)
T cd05753          70 GSYDY   74 (83)
T ss_pred             CCcee
Confidence            87643

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.25  E-value=1.9e-11  Score=83.99  Aligned_cols=69  Identities=23%  Similarity=0.388  Sum_probs=54.2

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC----CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN----NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~----~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +..+.+.+|+++.|.|.+.+ |.+.+.|++++..+...    .++..      ...   .|.|.+++.+|+|.|.|.|.+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~------~~~---~L~I~~~~~~D~G~Y~C~a~~   72 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLV------TED---GLLIRSVSPADAGVYTCQSVE   72 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEE------cCC---CEEEccCCHHHCEEEEEEEec
Confidence            45567899999999999987 88899999999877643    23322      111   378999999999999999987


Q ss_pred             CCE
Q psy15667         85 RAG   87 (286)
Q Consensus        85 ~~g   87 (286)
                      ..+
T Consensus        73 ~~~   75 (89)
T cd04979          73 HGF   75 (89)
T ss_pred             Ccc
Confidence            643

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.23  E-value=9.1e-11  Score=79.42  Aligned_cols=64  Identities=23%  Similarity=0.394  Sum_probs=50.0

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .+.+|..+.|.|.+.  .+.+++.|.++|..+.... ++.+.     .+.|.|.++..+|+|.|+|.|.+..
T Consensus         7 ~v~~G~~v~L~C~~~--~~~~~i~W~~ng~~i~~~~~r~~~~-----~~~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           7 TFKLGNNAELKCSPK--SNLARVVWKFDGKVLTPESAKYLLY-----RDGLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             EEECCCCEEEEEECC--CCCCeEEEEECCEECCCCCceEEEE-----CCcEEEeCCCHHHCEEEEEEEEecc
Confidence            356788888888753  3578999999999987653 33322     2468999999999999999999885

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.22  E-value=1.7e-11  Score=82.15  Aligned_cols=62  Identities=34%  Similarity=0.565  Sum_probs=46.2

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEc-C-------CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFEL-P-------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l-~-------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      ++|.|.+.|.|.|.+.|++++... +       .+.++.+    ..+    ..|.|.++..+|+|.|+|.|.|..|..
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~~~----~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~   70 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRIQL----LSN----GSLLIKHVLEEDSGYYLCKVSNDVGAD   70 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCEEE----ecC----CeEEECcCCcccCEEEEEEEEeCCCCC
Confidence            579999999999999999975321 1       2233321    111    248899999999999999999988753

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.22  E-value=1.1e-10  Score=80.95  Aligned_cols=90  Identities=20%  Similarity=0.295  Sum_probs=56.5

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      ++.+.+|+++.|.|.+.+.|.+.+.|.+....                               .- ++++.......++.
T Consensus         6 ~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~-------------------------------~l-~~~~~~~~~~~r~~   53 (95)
T cd07701           6 NVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQ-------------------------------TL-YFDDKKALRDNRIE   53 (95)
T ss_pred             eEEEecCCcEEEEEEEecCCceEEEEeCCCCe-------------------------------EE-EEcCcccccCCCEE
Confidence            46677888888888888777777777642110                               00 11111111222333


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..........|.|.++..+|+|.|+|.+.+.. ....++.|+|
T Consensus        54 ~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~t~~-~~~~~~~l~v   95 (95)
T cd07701          54 LVRASWHELSISISDVSLSDEGQYTCSLFTMP-VKTSKAYLTV   95 (95)
T ss_pred             EEECCCCcEEEEECcCCcccCEEEEEEeEeec-CccEEEEEEC
Confidence            22221234689999999999999999999954 4478888876

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.20  E-value=8.8e-11  Score=79.34  Aligned_cols=65  Identities=23%  Similarity=0.298  Sum_probs=52.3

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      .+.+|+.+.|.|.+..+.+.+.+.|+|+|..+...         .....|.|.+++.+|+|.|+|.|.|..|..
T Consensus        10 ~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~~~~~---------~~~~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753          10 VVFEGEPLVLRCHGWKNKPVYKVTYYRDGKAKKYS---------HSNSNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             eecCCCCEEEEeeCCCCCcceEEEEEECCeEcccc---------CCCceEEECccCHHHCEEEEEEEEeCCcee
Confidence            47789999999987656677889999999866421         113579999999999999999999998743

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.19  E-value=1.4e-10  Score=73.63  Aligned_cols=63  Identities=51%  Similarity=0.927  Sum_probs=49.9

Q ss_pred             CCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      +|++++|.|.+.+.|.+.+.|++++..+....+.      . ...  ..|.|.++...|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~------~-~~~--~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLPESNRL------S-ASG--STLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECCCCCEE------e-cCC--cEEEEeeCCcccCEEEEEEEecCCC
Confidence            5899999999989999999999999888721111      1 111  2488999999999999999998754

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.19  E-value=7.6e-11  Score=81.16  Aligned_cols=78  Identities=19%  Similarity=0.263  Sum_probs=55.5

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEc-C-C------------CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-P-T------------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l-~-~------------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +.+.+|++|+|.|...+.|.+.+.|+++++.. . .            .+|+....  ...+.....|+|.+++.+|+|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~--~~~~~g~~~L~I~~l~~sDsgt   79 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--NLWDQGSFPLIIKNLKIEDSDT   79 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceec--ccCCCCeEEEEECCCCHHHCEE
Confidence            45789999999999999999999999876332 1 1            11221110  0011223469999999999999


Q ss_pred             EEEEEEcCCEEEEE
Q psy15667         78 YACVAENRAGTCEI   91 (286)
Q Consensus        78 Y~C~a~n~~g~~~~   91 (286)
                      |.|.+.|..+..++
T Consensus        80 Y~C~v~~~~~~~~~   93 (94)
T cd07690          80 YICEVEDKKEEVEL   93 (94)
T ss_pred             EEEEECCccceEEe
Confidence            99999998877653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.19  E-value=5.2e-11  Score=81.64  Aligned_cols=79  Identities=19%  Similarity=0.347  Sum_probs=60.4

Q ss_pred             CCeeEec-cccccccCCCcEEEEEE-eecCCCCeeEEeeCCEE-cCCCCeeEeceEEecccceeEEEEEcccccCCCe-E
Q psy15667          2 PPILTYS-FIEQTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFE-LPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-E   77 (286)
Q Consensus         2 ~p~~~~~-~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~   77 (286)
                      .|+|... ...+.+.+|+.+.|.|. ..|.|.|.|.|++++.. +..+.|+.++    ..|    .|.|.+++.+|+| .
T Consensus         2 ~~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~G----nL~fs~v~~~D~g~~   73 (95)
T cd05845           2 TPKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNG----NLYFANVEEQDSHPD   73 (95)
T ss_pred             CCcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCc----eEEEEEEehhhCCCC
Confidence            4566644 35568999999999997 68999999999987654 4455665442    123    3889999999999 8


Q ss_pred             EEEEEEcCCEE
Q psy15667         78 YACVAENRAGT   88 (286)
Q Consensus        78 Y~C~a~n~~g~   88 (286)
                      |.|.|.|....
T Consensus        74 Y~C~a~~~~~~   84 (95)
T cd05845          74 YICHAHFPGLR   84 (95)
T ss_pred             eEEEEEccccc
Confidence            99999997543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.16  E-value=2.3e-10  Score=78.56  Aligned_cols=76  Identities=28%  Similarity=0.378  Sum_probs=54.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC--CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~  281 (286)
                      +.+|+.+.|.|.+. + |.+.+.|+|++..+....  ...+...   ...|.|.++..+|+|.|+|.|.|.. +....+.
T Consensus         8 v~~g~~v~L~C~~~-~-p~~~i~W~k~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~~~~~   82 (89)
T cd04979           8 VVEGNSVFLECSPK-S-NLASVVWLFQGGPLQRKEEPEERLLVT---EDGLLIRSVSPADAGVYTCQSVEHGFKQTLATY   82 (89)
T ss_pred             EECCCcEEEEEeCC-C-CCceEEEEECCcccccccCcCceEEEc---CCCEEEccCCHHHCEEEEEEEecCccceeEeEE
Confidence            45678888888764 3 677899999998765432  1122221   2358899999999999999999865 5666666


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        83 ~l~V   86 (89)
T cd04979          83 SLNV   86 (89)
T ss_pred             EEEE
Confidence            6665

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.16  E-value=7.4e-11  Score=81.04  Aligned_cols=70  Identities=27%  Similarity=0.523  Sum_probs=53.5

Q ss_pred             ccccCCCcEEEEEE-eecCCCCeeEEeeCCEEc--CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         12 QTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFEL--PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        12 ~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~l--~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      ..+.+|+.++|.|. -.|.|.+.+.|++|+.++  ..+.|..+++   ..|    .|.|.+++.+|+|.|+|.|+|....
T Consensus        13 ~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~---~~G----~L~fs~v~~~D~g~Y~C~A~n~~~~   85 (96)
T cd05727          13 VKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQ---TNG----NLYIAKVEASDRGNYSCFVSSPSST   85 (96)
T ss_pred             eeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeC---CCC----cEEEeecCHhhCceeEEEEEecccC
Confidence            46889999999995 557899999999998764  3344433221   133    3889999999999999999997543

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.16  E-value=4.7e-10  Score=74.34  Aligned_cols=66  Identities=21%  Similarity=0.318  Sum_probs=50.4

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.|.|....+.|++.|+|+||++++.......... .....++|.|.....+|++.|+|.|.|.++.
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~   68 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELKGVISQQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALV   68 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECCCCcccccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhC
Confidence            57899999999999999999999996432111000 0012457999999999999999999999865

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.16  E-value=2.6e-10  Score=77.58  Aligned_cols=36  Identities=39%  Similarity=0.524  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        49 ~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~t~~~V   84 (86)
T cd05862          49 SSTLTIENVTLSDLGRYTCTASSGQMIAKNSTIVIV   84 (86)
T ss_pred             eeEEEEecCCcccCEEEEEEEeecceEecccEEEEE
Confidence            568999999999999999999999999999999887

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.15  E-value=7.1e-11  Score=81.23  Aligned_cols=70  Identities=24%  Similarity=0.366  Sum_probs=54.9

Q ss_pred             cccccCCCcEEEEEEeec-----CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         11 EQTLQPGPAVSLKCIASG-----NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g-----~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+.+.+|+++.|.|...+     +|.|.+.|+||+.++..+.+...      .+.   .|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~~~i~~~~~~~~------~~~---~L~I~~v~~~DsG~YtC~~~n~   74 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDCKLLEGDRKRFV------KGS---KLLIQNVTEEDAGNYTCKLTFT   74 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECCEECCCCccEEe------cCC---EEEEeeCChhhCEEEEEEEEec
Confidence            357889999999997654     36789999999999976544321      122   4889999999999999999987


Q ss_pred             CEEE
Q psy15667         86 AGTC   89 (286)
Q Consensus        86 ~g~~   89 (286)
                      .+..
T Consensus        75 ~~~~   78 (92)
T cd05757          75 HNGK   78 (92)
T ss_pred             CCCE
Confidence            6543

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.12  E-value=1.4e-09  Score=75.54  Aligned_cols=91  Identities=20%  Similarity=0.394  Sum_probs=57.0

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+.+|++++|.|.+.+.+.+.+.|.+...                               ...|+++...+. ..++
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~-------------------------------~~~~~~~~~~~~-~~r~   52 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQ-------------------------------QTLYFNDKRALR-DNRI   52 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCC-------------------------------cEEEeccccccc-cCcE
Confidence            34667789999999988887778888864210                               112222222111 1223


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+.........|.|.+++.+|+|.|+|.+.+... ...++.|+|
T Consensus        53 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~-~~~~~~~~v   95 (95)
T cd05717          53 QLVNFSANELSISISNVSLSDEGRYTCSLYTMPV-QTAKATVTV   95 (95)
T ss_pred             EEEcCCCCeeEEEEccCCcccCEEEEEEEecCCC-ceEEEEEEC
Confidence            2221112245799999999999999999998753 466666765

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.10  E-value=2.4e-10  Score=73.19  Aligned_cols=63  Identities=35%  Similarity=0.653  Sum_probs=45.9

Q ss_pred             CCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667         17 GPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus        17 G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |++++|.|.+ .+.|.+.+.|.++++.+.........   .........|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~---~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRS---TNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEE---ETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEee---cccceeeeEEEEccCCHHHCEEEEEEC
Confidence            8999999999 77888999999998766543332211   111111113999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=99.06  E-value=8.4e-10  Score=75.89  Aligned_cols=70  Identities=24%  Similarity=0.286  Sum_probs=47.5

Q ss_pred             CCCCeEEEEEeee----cCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        206 PEGARTRVICGVT----HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       206 ~~g~~~~l~c~~~----~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      ..|....|.|.-.    ...+.+.+.|+||+.++....... ... .....|.|.+|..+|+|.|+|.|.|..|..
T Consensus         8 ~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~-~~~-~~~~~L~I~~v~~~D~G~YtC~~~~~~~g~   81 (95)
T cd05897           8 FTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKF-YSL-KGSTYLHIIDVSLNDSGYYTCKLQFTHEGK   81 (95)
T ss_pred             ccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcce-Eec-CCCCEEEEEEcChhhCEEEEEEEEEeeCCE
Confidence            3455555555311    134667999999999886443221 111 123479999999999999999999997654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.06  E-value=1.1e-09  Score=69.44  Aligned_cols=63  Identities=51%  Similarity=0.823  Sum_probs=47.8

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +|+.+.|.|.+ .+.+.+.+.|++++..+..  .....   .....|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~--~~~~~---~~~~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPA-EGDPVPNITWLKDGKPLPE--SNRLS---ASGSTLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeC-ccCCCCeEEEEECCEECCC--CCEEe---cCCcEEEEeeCCcccCEEEEEEEecCCC
Confidence            46778888875 4677788999999987762  11111   2245899999999999999999999865

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.06  E-value=8e-10  Score=73.97  Aligned_cols=69  Identities=36%  Similarity=0.736  Sum_probs=54.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.++..+  ..+.+|++++|.|.+.++|.+.+.|++++..+....           .    .+.|.++..+|+|.|+|.+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~~~~~~~~-----------~----~~~~~~~~~~~~g~y~C~~   64 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNGSPINSSQ-----------N----GLFIPNVSPEDSGNYTCRA   64 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETTEEEEEES-----------S----EEEESSEEGGGTEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeeeeeeeeee-----------e----eeeeeeeccccCEEEEEEE
Confidence            5566444  678999999999999999999999999987765211           1    1557899999999999999


Q ss_pred             EcCCEE
Q psy15667         83 ENRAGT   88 (286)
Q Consensus        83 ~n~~g~   88 (286)
                      .+..+.
T Consensus        65 ~~~~~~   70 (80)
T PF13895_consen   65 SNGSGS   70 (80)
T ss_dssp             EETTEE
T ss_pred             EeCCCC
Confidence            996653

...

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.05  E-value=5.5e-10  Score=71.50  Aligned_cols=63  Identities=38%  Similarity=0.674  Sum_probs=43.5

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCe-eeEEEcccCCCCCeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-SLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~-~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      |+.+.|.|.+..+.+.+.+.|+|++..+............... ..|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTNRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEEEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeEeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            5677788877557788899999998866443222222111111 12999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.05  E-value=1.5e-09  Score=75.43  Aligned_cols=74  Identities=23%  Similarity=0.403  Sum_probs=52.5

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEE-c-------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE-L-------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ..++.+.+|++++|.|.+.+.|.+.+.|++.+.. +       ..+.|+....    .......|.|.+++.+|+|.|.|
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG~Y~C   79 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVN----FSANELSISISNVSLSDEGRYTC   79 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEc----CCCCeeEEEEccCCcccCEEEEE
Confidence            3466789999999999999989999999853221 1       1234543311    11112358999999999999999


Q ss_pred             EEEcCC
Q psy15667         81 VAENRA   86 (286)
Q Consensus        81 ~a~n~~   86 (286)
                      .+.+..
T Consensus        80 ~~~~~~   85 (95)
T cd05717          80 SLYTMP   85 (95)
T ss_pred             EEecCC
Confidence            988754

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.04  E-value=6.1e-10  Score=76.37  Aligned_cols=69  Identities=20%  Similarity=0.337  Sum_probs=51.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCceeeecCCCeeeEEEcccCCCCCe-EEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~~  277 (286)
                      +.+|+.+.|.|....|.|.|.+.|.+++... ..+.++.+.    ..+.|.|.+|..+|+| .|.|.|.|.+...
T Consensus        15 V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~~~Ri~~~----~~GnL~fs~v~~~D~g~~Y~C~a~~~~~~~   85 (95)
T cd05845          15 VEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQDERVSMG----QNGNLYFANVEEQDSHPDYICHAHFPGLRT   85 (95)
T ss_pred             EecCCCEEEEecCCCCCCCCEEEEECCCCccccccccEEEC----CCceEEEEEEehhhCCCCeEEEEEcccccc
Confidence            5677788888876678888999999876543 223333221    2478999999999999 8999999987543

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.03  E-value=1.5e-09  Score=73.79  Aligned_cols=71  Identities=24%  Similarity=0.378  Sum_probs=48.1

Q ss_pred             CCcEEEEEEeecCCC--CeeEEeeCCEEcCC---CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         17 GPAVSLKCIASGNPT--PDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        17 G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      |++++|.|.+.++|.  ..+.|.+.++.+..   ......  ...........|.|.+++.+|+|.|+|.|.|..|..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~--~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~   76 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRR--SLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA   76 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceecccccc--cccccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence            789999999988664  47799887754311   111000  000011234569999999999999999999987754

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.03  E-value=2.3e-09  Score=73.67  Aligned_cols=74  Identities=22%  Similarity=0.262  Sum_probs=51.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCe--eCC----CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE-ecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGK--PLS----PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS-NTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~--~~~----~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~-N~~g~~  277 (286)
                      ..+|+.+.|.|..  +.|.+.+.|+|.+.  ...    ...+...     ....|.|.++.++|+|.|+|.|. |..+..
T Consensus         8 ~~eG~~v~L~C~~--~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~-----~~~~L~I~~~~~~DsG~Y~C~a~~~~~~~~   80 (91)
T cd05871           8 GVENNSTFLECLP--KSPQASVKWLFQRGGDQRKEEVKTEERLIH-----TERGLLLRSLQRSDAGVYTCTAVEHSFSQT   80 (91)
T ss_pred             EecCCcEEEEEEC--CCCCceEEEEEECCCCCccccccccccEEE-----ecCeEEEeeCChhHCEEEEEEEEccCCeEE
Confidence            4567888888874  36778889987332  211    1112211     12458999999999999999998 567777


Q ss_pred             eeEEEEEE
Q psy15667        278 RYSSKLQV  285 (286)
Q Consensus       278 ~~~~~L~V  285 (286)
                      ...+.|.|
T Consensus        81 ~~~~~l~v   88 (91)
T cd05871          81 LAKYTLHV   88 (91)
T ss_pred             EEEEEEEE
Confidence            77888876

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=99.02  E-value=6.4e-10  Score=74.75  Aligned_cols=65  Identities=28%  Similarity=0.533  Sum_probs=53.6

Q ss_pred             ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .++++.+|+.++|.|...++ .+.+.|++||.+|..+.++...    ..|     |.|.++..+|+|.|.|.+..
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l~~~~r~~~~----~~G-----LlI~~~~~~dsG~Y~C~s~E   68 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPLNAQFSYRVG----TDG-----LLILVTSPEHSGTYRCYSEE   68 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCcccCCCcceEEe----CCC-----CEEEECCHhhCEEEEEEEec
Confidence            45789999999999999876 5689999999999877776532    122     66999999999999999873

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.02  E-value=3.2e-09  Score=73.10  Aligned_cols=38  Identities=26%  Similarity=0.412  Sum_probs=35.3

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....|.|.+++.+|+|.|+|.|.|+.+..+.++.|.|+
T Consensus        63 Y~S~L~L~Rlk~~E~G~YTf~a~N~~~~~s~tF~l~v~  100 (101)
T cd05860          63 YVSELHLTRLKGTEGGTYTFLVSNSDASASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEeecChhhCcEEEEEEECCCCeEEEEEEEEEe
Confidence            35789999999999999999999999999999999885

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.01  E-value=3.4e-09  Score=72.94  Aligned_cols=82  Identities=15%  Similarity=0.315  Sum_probs=60.0

Q ss_pred             cccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+.+.+|+++.|.|.+++.|+|+ +.|.+++..+..............+..-.+.|.|..+..+|+|.|+|.|.|.....
T Consensus        12 ~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~~   91 (101)
T cd05860          12 TIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDASA   91 (101)
T ss_pred             eEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCeE
Confidence            34689999999999999999997 99999988764322211111100001134569999999999999999999998877


Q ss_pred             EEe
Q psy15667         90 EIT   92 (286)
Q Consensus        90 ~~~   92 (286)
                      +++
T Consensus        92 s~t   94 (101)
T cd05860          92 SVT   94 (101)
T ss_pred             EEE
Confidence            654

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>smart00410 IG_like Immunoglobulin like

Probab=98.98  E-value=1.3e-08  Score=68.49  Aligned_cols=80  Identities=35%  Similarity=0.588  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +..|+.+.|.|.+... +.+.+.|+++ +..+....+..+..... ...|.|.++..+|+|.|+|.+.|..+.....+.|
T Consensus         6 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00410        6 VKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            3456677777766533 6778889987 77765444444433222 4689999999999999999999998888888888


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        84 ~V~   86 (86)
T smart00410       84 TVL   86 (86)
T ss_pred             EEC
Confidence            774

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.98  E-value=1.3e-08  Score=68.49  Aligned_cols=80  Identities=35%  Similarity=0.588  Sum_probs=58.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +..|+.+.|.|.+... +.+.+.|+++ +..+....+..+..... ...|.|.++..+|+|.|+|.+.|..+.....+.|
T Consensus         6 ~~~g~~~~l~C~~~~~-~~~~~~W~~~~~~~v~~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~~~~~l   83 (86)
T smart00409        6 VKEGESVTLSCEVSGS-PPPEVTWYKQGGKLLAESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATNSSGSASSTTTL   83 (86)
T ss_pred             EeCCCeEEEEEEEccC-CCCeEEEEECCCEEcCCCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEcCCCeEEEEEEE
Confidence            3456677777766533 6778889987 77765444444433222 4689999999999999999999998888888888


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        84 ~V~   86 (86)
T smart00409       84 TVL   86 (86)
T ss_pred             EEC
Confidence            774

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.97  E-value=3e-09  Score=73.50  Aligned_cols=63  Identities=21%  Similarity=0.297  Sum_probs=44.1

Q ss_pred             CCeEEEEeCCeeCCCCCCceee--ecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        223 PLTIRWLKDGKPLSPRFPVNVS--DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       223 ~~~~~W~~~g~~~~~~~~~~~~--~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...+.|+|++..+.........  ........|.|..+..+|+|.|+|++.|.-.-.+.++.|+|
T Consensus        40 ~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~~Lwf~Pa~~eDSG~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          40 GLSLMWYKSSGDGEEPIEIIFDGVRMSKEEDSIWFRPAELQDSGLYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             CceEEEEECCCCCCCCCcccccceeEEEeCCEEEEEeCChhhCeEEEEEECCCCcceEEEEEEEC
Confidence            4579999997555432211100  00112457999999999999999999999877777777765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.97  E-value=2.2e-09  Score=70.74  Aligned_cols=74  Identities=34%  Similarity=0.568  Sum_probs=51.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+.......+. ++|+|.+.+.| .+.+.|+ +.........       .........|.|.++..+|.|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~-~~~~~~~~~~-------~~~~~~~~~L~i~~v~~~~~g~y~C   71 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWY-DSNPSFNSNS-------RGSSSSNSTLTISNVTRSDNGTYTC   71 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEE-TEEEEEEEEE-------EEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEE-ecCCceeeee-------eeccceeeEEEEccCCHHhCcEEEE
Confidence            57788777666666555 99999999987 8899999 2111100000       0111223469999999999999999


Q ss_pred             EEEc
Q psy15667         81 VAEN   84 (286)
Q Consensus        81 ~a~n   84 (286)
                      .|.|
T Consensus        72 ~a~N   75 (75)
T PF13927_consen   72 IASN   75 (75)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9986

...

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.95  E-value=8e-09  Score=71.09  Aligned_cols=72  Identities=21%  Similarity=0.305  Sum_probs=53.4

Q ss_pred             ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEc--------CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .++++.+|++++|+|.+.+.....+.|++-+..+        ..+.||.....   .+ ...+|.|.+++.+|+|.|.|.
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~---~~-~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNF---SS-NELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeC---CC-CEEEEEECcCCcccCEEEEEE
Confidence            4578999999999999998866677777655322        35677754321   22 234699999999999999999


Q ss_pred             EEcC
Q psy15667         82 AENR   85 (286)
Q Consensus        82 a~n~   85 (286)
                      +...
T Consensus        81 v~t~   84 (95)
T cd05881          81 LYTD   84 (95)
T ss_pred             EEcc
Confidence            8763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.95  E-value=3.4e-09  Score=70.87  Aligned_cols=70  Identities=36%  Similarity=0.700  Sum_probs=53.5

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSK  282 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~  282 (286)
                      .+.+|+.+.|.|.+. +.|.+.+.|++++..+...           ...+.|..+..+|+|.|+|.|.|.. +..+.++.
T Consensus        10 ~v~~g~~~~l~C~~~-~~p~~~~~w~~~~~~~~~~-----------~~~~~~~~~~~~~~g~y~C~~~~~~~~~~s~~~~   77 (80)
T PF13895_consen   10 SVEEGDSVTLTCSVS-GNPPPQVQWYKNGSPINSS-----------QNGLFIPNVSPEDSGNYTCRASNGSGSNTSTSVN   77 (80)
T ss_dssp             EEETTSEEEEEEEEE-SSSSSEEEEEETTEEEEEE-----------SSEEEESSEEGGGTEEEEEEEEETTEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEE-cccceeeeeeeeeeeeeee-----------eeeeeeeeeccccCEEEEEEEEeCCCCeEeeeEE
Confidence            356788888888876 7777899999998766421           1126788999999999999999955 56667777


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |+|
T Consensus        78 v~V   80 (80)
T PF13895_consen   78 VTV   80 (80)
T ss_dssp             EEE
T ss_pred             eeC
Confidence            765

...

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.94  E-value=2.1e-09  Score=73.92  Aligned_cols=71  Identities=24%  Similarity=0.386  Sum_probs=53.1

Q ss_pred             cccccCCCcEEEEEE-ee----cCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCI-AS----GNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~-~~----g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+.+.+|.+..|.|. ..    .++.|+++|+||+.+|..+. ++..     ..++.  .|.|.++..+|+|.|+|.|.+
T Consensus         4 ~~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~~~l~~~~~~~~~-----~~~~~--~L~I~~v~~~D~G~YtC~~~~   76 (95)
T cd05897           4 PQILFTSTSGKLVCPDLSDFTINRTDVELQWYKDSVLLDKDNEKFYS-----LKGST--YLHIIDVSLNDSGYYTCKLQF   76 (95)
T ss_pred             eeEeccccCcEEECCCHHHcccCCCCCcEEEccCCEECcCCCcceEe-----cCCCC--EEEEEEcChhhCEEEEEEEEE
Confidence            367889999999995 22    34778999999999987544 3321     01221  388999999999999999999


Q ss_pred             CCEE
Q psy15667         85 RAGT   88 (286)
Q Consensus        85 ~~g~   88 (286)
                      ..|.
T Consensus        77 ~~~g   80 (95)
T cd05897          77 THEG   80 (95)
T ss_pred             eeCC
Confidence            7543

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=98.94  E-value=2.6e-09  Score=73.36  Aligned_cols=64  Identities=17%  Similarity=0.346  Sum_probs=46.8

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCE--Ec----CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGF--EL----PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~l----~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+...+|+++.|.|.. +.|.|.+.|++++.  .+    ..+.++..      ..   ..|.|.+++.+|+|.|+|.|.+
T Consensus         5 ~~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~~------~~---~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           5 VVYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLIH------TE---RGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             EEEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEEE------ec---CeEEEeeCChhHCEEEEEEEEc
Confidence            3567899999999996 58899999998432  21    12233321      11   2388999999999999999985

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>KOG3515|consensus

Probab=98.94  E-value=1.3e-08  Score=92.86  Aligned_cols=271  Identities=21%  Similarity=0.196  Sum_probs=150.3

Q ss_pred             ccccccCCCcEEEEEEee--cCCCCeeEEeeCCEEcCC--CCeeEeceEE-ecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIAS--GNPTPDIGWTLDGFELPT--NNRFVIGQFV-SGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~--g~p~p~v~W~~~~~~l~~--~~~~~~~~~~-~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+.....+..+.+.|.+.  +.|.+.+.|..++.....  ..+..+.... .........+.+.....+|.|.|+|.|.|
T Consensus       105 ~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss~t~~s~l~~~v~Rka~~g~~tC~A~n  184 (741)
T KOG3515|consen  105 GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSSYTEPSLLKQTVSRKADNGNYTCPANN  184 (741)
T ss_pred             cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCceeccccceeeEEEEecCCceeEccccc
Confidence            344456788999999544  578899999998764321  1111111000 00101123477888899999999999988


Q ss_pred             CCE---EE------EE-----------------------------ecCCCCCeeEEEeeCCccCcCC------C---Ccc
Q psy15667         85 RAG---TC------EI-----------------------------TPYDSGPYLIAWFKDGRQIPGR------T---SST  117 (286)
Q Consensus        85 ~~g---~~------~~-----------------------------~~~~~~~~~~~W~~~g~~l~~~------~---~~~  117 (286)
                      ...   ..      .+                             .....+...++|+++...+...      .   ...
T Consensus       185 r~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~s~~~~~~sl~~~~~sg~~v~  264 (741)
T KOG3515|consen  185 RNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKDSRPQSESSLLSQEPSGDTVS  264 (741)
T ss_pred             ccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccccccchhhhcccCCCCCCccc
Confidence            421   10      00                             0011233578999988765321      1   111


Q ss_pred             eEEEccCCCCCCe-eEEEEEEcCCcceeeeeeEEEEcCCCce-ec-CCceEEecCCCEEEEeeEee-ecCCeEEEEEcCC
Q psy15667        118 SLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQLGGLPYV-RL-IPKVTAIDGEGLSIKCPVAG-YPIEEVHWEKVPP  193 (286)
Q Consensus       118 ~l~i~~v~~~d~G-~Y~C~a~~~~g~~~~~~~~l~v~~~~~~-~~-~~~~~~~~g~~~~l~c~~~~-~p~~~v~w~~~~~  193 (286)
                      ......+.++|.+ ...|.+.|..    ..+..+.+..++.. .+ .+...+..|....+.|...+ +|...+.|.+...
T Consensus       265 ~~~~~~~~r~~~~~~~kc~a~n~~----~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~~i~w~~~~~  340 (741)
T KOG3515|consen  265 STLVLRVGRQDLQAQLKCKASNLL----AASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPAHIAWYKDTK  340 (741)
T ss_pred             ccccccccccchhhhhhccccCcc----ccceeeecccccccccccCcccccccccccccceeccCCCCccceeeeccCc
Confidence            2222333444443 5679998821    22344555443321 12 22344667888888888765 6778899987211


Q ss_pred             cccc------------------------------------------------cc-------------cccCCCCCCCeEE
Q psy15667        194 KIES------------------------------------------------FA-------------FPFDGLPEGARTR  212 (286)
Q Consensus       194 ~~~~------------------------------------------------~~-------------~~~~~~~~g~~~~  212 (286)
                      ....                                                +.             .+.....+++...
T Consensus       341 ~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~v~~~e~d~~~  420 (741)
T KOG3515|consen  341 MPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTAVVAMEQDHQA  420 (741)
T ss_pred             ccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccceeeccCcccc
Confidence            0000                                                00             0001122333333


Q ss_pred             EEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       213 l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..-.+...++.+.+.|.+.+-++.+...-..-.. .....+.+.++...|.|.|.|.|.|+.|.+.....+.+
T Consensus       421 ~~~~~~~~p~~~~~~w~~~~~~~~~~~g~~~~v~-~~~~~~s~~~v~~~d~g~y~~tatns~gg~~~~~~~~~  492 (741)
T KOG3515|consen  421 APLPVRGAPAERTFYWTFRLYKLSQVDGGVVRVG-AGAGLGSGVNVSRSDGGSYGLTATNSPGGAQAYLLLGV  492 (741)
T ss_pred             ccCcccCCCcccchhheecceecccccCceEEee-ccccccccceeeeccCCcceeeeccCCCceeeEEeecc
Confidence            3333333455678999998887765443111111 11223346678999999999999999998877665443

>smart00409 IG Immunoglobulin

Probab=98.92  E-value=1.4e-08  Score=68.30  Aligned_cols=73  Identities=38%  Similarity=0.738  Sum_probs=57.7

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      ...+..|++++|.|.+.+.+.+.+.|+++ +..+..+.++....    ... ...|.|.++...|+|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~----~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR----SGS-NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE----cCC-eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            45678999999999999888899999998 88876555554321    111 346999999999999999999976654

>smart00410 IG_like Immunoglobulin like

Probab=98.92  E-value=1.4e-08  Score=68.30  Aligned_cols=73  Identities=38%  Similarity=0.738  Sum_probs=57.7

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      ...+..|++++|.|.+.+.+.+.+.|+++ +..+..+.++....    ... ...|.|.++...|+|.|.|.+.+..+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~----~~~-~~~l~i~~~~~~d~G~Y~C~v~~~~~~   76 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSR----SGS-NSTLTISNVTPEDSGTYTCAATNSSGS   76 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEE----cCC-eeEEEEEeeccccCeEEEEEEEcCCCe
Confidence            45678999999999999888899999998 88876555554321    111 346999999999999999999976654

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.91  E-value=1.5e-08  Score=68.33  Aligned_cols=74  Identities=22%  Similarity=0.316  Sum_probs=49.0

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.|.|.+..+.|.+.++|+|+|+.+............    .....|.|.....+|.|.|+|.|.|........+.++
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRDGEVLDGATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEECCEEccCceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            4688888767788899999999987533211111111    1134677888888899999999999875444444443

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.91  E-value=7.2e-09  Score=71.32  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=53.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+...+ ..+|.+|++|+|+|... .+...+.|+|+|....... .   .    .......|.|.+++.+|+|.|+|.+
T Consensus         3 P~L~a~p-~~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~-~---~----~~~~~~~f~i~~v~~~~~G~Y~C~~   72 (91)
T cd05751           3 PSLWAEP-SSVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKK-P---P----EPQNKAKFFIPSMKREHAGRYRCYY   72 (91)
T ss_pred             CEEEecC-CCccCCCCcEEEEEecC-CCCCEEEEEECCCCccccc-c---C----CCceeEEEEccCCChhHCEEEEEEE
Confidence            4555444 56899999999999876 6778899999987644211 0   0    1111235889999999999999999


Q ss_pred             EcC
Q psy15667         83 ENR   85 (286)
Q Consensus        83 ~n~   85 (286)
                      .+.
T Consensus        73 ~~~   75 (91)
T cd05751          73 RSG   75 (91)
T ss_pred             ECC
Confidence            885

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=98.89  E-value=8e-09  Score=71.10  Aligned_cols=29  Identities=21%  Similarity=0.345  Sum_probs=25.9

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                      ...|.|.+++.+|+|.|.|.+.|..++++
T Consensus        64 ~~~L~I~~l~~sDsgtY~C~v~~~~~~~~   92 (94)
T cd07690          64 SFPLIIKNLKIEDSDTYICEVEDKKEEVE   92 (94)
T ss_pred             eEEEEECCCCHHHCEEEEEEECCccceEE
Confidence            45699999999999999999999988764

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.86  E-value=1.4e-08  Score=67.24  Aligned_cols=63  Identities=24%  Similarity=0.386  Sum_probs=46.8

Q ss_pred             cEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEeccc---ceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         19 AVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG---DVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        19 ~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~---~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .++|+|... |+|+++++|++|+++|.....- .     .++   .....|.+.-...+|.+.|+|+|.|..+
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~~~l~~~~~~-~-----~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~   67 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDRKELKGVISQ-Q-----ENGKTVSVSNTIRFPVDRKDDGAILSCEASHPAL   67 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECCEECCCCccc-c-----cCCceEEEEEEEEEEeeeccCCcEEEEEEEChhh
Confidence            378999866 6899999999999999643210 0     111   1234588888888888999999999765

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.86  E-value=1.1e-07  Score=65.51  Aligned_cols=80  Identities=21%  Similarity=0.317  Sum_probs=55.3

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      .++++.+|++++|.|.+.+.....++|.+..                               ..+-|+.+.... .+.++
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~-------------------------------~~~i~~~~~~~~-~d~Rf   52 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNNDDSVIQLLNPN-------------------------------RQTIYFRDVRPL-KDSRF   52 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCCccEEEEEecC-------------------------------CcEEEecCcccc-CCcCE
Confidence            3567778999999999988777778887432                               223455554443 34455


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .........-+|.|.++..+|+|.|.|.+...
T Consensus        53 ~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~t~   84 (95)
T cd05881          53 QLVNFSSNELRVSLSNVSLSDEGRYFCQLYTD   84 (95)
T ss_pred             EEEeCCCCEEEEEECcCCcccCEEEEEEEEcc
Confidence            54432233457999999999999999999764

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.86  E-value=1.9e-08  Score=67.84  Aligned_cols=65  Identities=28%  Similarity=0.486  Sum_probs=45.7

Q ss_pred             cEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         19 AVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        19 ~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+.|+|.+.| .|.+.++|++||++|... ......  ...+.   ....|.|.....+|.|.|+|.|.|..
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~g~~l~~~-~~~~~~--~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~   69 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRDGEVLDGA-TYSKEL--LKDGKRETTVSTLPITPSDHDTGRTFTCRARNEA   69 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEECCEEccCc-eeeeeE--ecCCCeEEEEEEEEEeCceecCCCEEEEEEcCcc
Confidence            3689999987 698999999999988543 221111  11121   23457788888888899999998854

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.84  E-value=6.1e-08  Score=67.97  Aligned_cols=88  Identities=23%  Similarity=0.300  Sum_probs=58.4

Q ss_pred             CCCEEEEeeEeeec---CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC------CC
Q psy15667        169 GEGLSIKCPVAGYP---IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RF  239 (286)
Q Consensus       169 g~~~~l~c~~~~~p---~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~------~~  239 (286)
                      |++++|.|......   ...+.|.+..                             +.+.+.|++++.....      ..
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~-----------------------------~~~~v~~~~~~~~~~~~~~~~~~~   51 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQ-----------------------------FSPAVHLYRDGQDQYGEQMPEYRG   51 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECC-----------------------------CceeEEEEcCCcccccccCccccc
Confidence            67899999986322   1358887632                             2234566666654321      11


Q ss_pred             Cceeeec--CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        240 PVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       240 ~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +..+...  ......|.|.+++.+|+|.|+|.+.|..+.....+.|.|
T Consensus        52 R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          52 RTELLKDAIAEGSVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             eEEeecccccCCcEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            2222111  123468999999999999999999998888888888877

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.81  E-value=2.7e-08  Score=66.84  Aligned_cols=73  Identities=25%  Similarity=0.443  Sum_probs=52.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|..+.|.|...  .+.+.+.|+++|..+..+.++....     .-|.|..+.++|+|.|.|.|. +.|-....+.+.
T Consensus         8 v~~g~~v~L~C~~~--s~~A~v~W~~ng~~l~~~~r~~~~~-----~GLlI~~~~~~dsG~Y~C~s~-E~gf~~~~~~y~   79 (85)
T cd05872           8 VAPGADVVLPCQLR--SNLASPVWLFNGTPLNAQFSYRVGT-----DGLLILVTSPEHSGTYRCYSE-EEGFQQLVASYS   79 (85)
T ss_pred             EecCCCEEEECCCC--CCCccEEEEECCcccCCCcceEEeC-----CCCEEEECCHhhCEEEEEEEe-cCCCeEEEEEEE
Confidence            55677777888653  3467999999999887655544332     236799999999999999987 556555555544


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      +
T Consensus        80 l   80 (85)
T cd05872          80 L   80 (85)
T ss_pred             E
Confidence            3

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.80  E-value=3.5e-08  Score=70.37  Aligned_cols=77  Identities=21%  Similarity=0.227  Sum_probs=54.5

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEeeCCE---Ec-----------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF---EL-----------PTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~---~l-----------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ..+..+.+.+|++|+|.|.+.+.+...+.|++...   +.           ....|+.+..   ........|.|.+++.
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~~~~   79 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATL---DKSRKSSSLHISAAQL   79 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEE---cccCCEEEEEECCCCH
Confidence            45567789999999999999988888999998531   10           1223443211   1112234699999999


Q ss_pred             CCCeEEEEEEEcCC
Q psy15667         73 EDGGEYACVAENRA   86 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~   86 (286)
                      +|+|.|.|.+.+..
T Consensus        80 ~DsG~Y~C~~~~~~   93 (109)
T cd04983          80 SDSAVYFCALSESG   93 (109)
T ss_pred             HHCEEEEEEEecCC
Confidence            99999999988753

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.76  E-value=2.6e-08  Score=68.82  Aligned_cols=74  Identities=18%  Similarity=0.281  Sum_probs=49.8

Q ss_pred             ccccccCCCcEEEEEEee-----------cCCCCeeEEeeCCEEcCCCCeeEec-eEEecccceeEEEEEcccccCCCeE
Q psy15667         10 IEQTLQPGPAVSLKCIAS-----------GNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~-----------g~p~p~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ....+.+||.+.|.|-..           ..+...+.|+|++..+......... .++..+++   .|.|..+..+|+|.
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~~~~~---~Lwf~Pa~~eDSG~   84 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMSKEED---SIWFRPAELQDSGL   84 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEEEeCC---EEEEEeCChhhCeE
Confidence            345789999999999751           1223479999997665432211000 01122333   38899999999999


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|.+.|..
T Consensus        85 Y~C~~rN~t   93 (104)
T cd05896          85 YTCVLRNST   93 (104)
T ss_pred             EEEEECCCC
Confidence            999999975

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.75  E-value=9.3e-08  Score=67.80  Aligned_cols=37  Identities=16%  Similarity=0.326  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...|.|.+++.+|+|.|.|.+.+..+.....+.|.|+
T Consensus        67 ~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          67 DASLVITDLRLEDYGRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             cEEEEEccCChHHCEEEEEEEEecccceEEEEEEEEE
Confidence            4579999999999999999999999998899888874

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.75  E-value=5e-08  Score=69.71  Aligned_cols=75  Identities=21%  Similarity=0.274  Sum_probs=53.0

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeCCE--EcC----------------CCCeeEeceEEecccceeEEEEE
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF--ELP----------------TNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~l~----------------~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ...+....+.+|++++|.|.+.+ +.+.+.|+|...  .+.                ...|+...    ........|.|
T Consensus         2 ~Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~----~~~~~~~~L~I   76 (110)
T cd05899           2 TQSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSAS----RPSLTRSSLTI   76 (110)
T ss_pred             EECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEE----CcCCCccEEEE
Confidence            34566788999999999999987 778899998532  110                02333321    11112346999


Q ss_pred             cccccCCCeEEEEEEEcC
Q psy15667         68 SHVTVEDGGEYACVAENR   85 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+++.+|+|.|.|.+.+.
T Consensus        77 ~~~~~~Dsg~Y~Ca~~~~   94 (110)
T cd05899          77 KSAEPEDSAVYLCASSLG   94 (110)
T ss_pred             CCCChhhCEEEEEEeeCC
Confidence            999999999999998764

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.71  E-value=1.3e-07  Score=62.98  Aligned_cols=75  Identities=21%  Similarity=0.359  Sum_probs=52.7

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCc-eeee-cCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPV-NVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV  285 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~-~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V  285 (286)
                      +.|.|.+..+.|++.|+|+|+++++...... .... .....+.|.|..-...|...|+|.|.|.. ...+.+..|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCcccceeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            5789999999999999999999998654221 0110 11235578887777778899999999975 23455555555

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.66  E-value=1.5e-07  Score=66.74  Aligned_cols=75  Identities=27%  Similarity=0.350  Sum_probs=52.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCC--EE---cC---------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDG--FE---LP---------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~--~~---l~---------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +...+....+.+|++|+|.|.+.+.. ...+.|+|..  ..   |.         ...|+...     .......|.|.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~   77 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGS-----GSGTDFTLTISR   77 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEe-----ccCCEEEEEECC
Confidence            45567778899999999999987665 5679999742  11   10         01233221     111234699999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|+|.|.|.+.+
T Consensus        78 ~~~~Dsg~Y~Ca~~~   92 (106)
T cd04980          78 VEPEDAAVYYCQQYG   92 (106)
T ss_pred             CChHHCEEEEEEEeC
Confidence            999999999998865

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.66  E-value=4.3e-07  Score=64.36  Aligned_cols=38  Identities=21%  Similarity=0.363  Sum_probs=33.6

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....|.|.+++.+|+|.|.|.+.|..+.....+.|.|+
T Consensus        66 ~~~sL~I~~v~~sD~G~Y~C~v~~~~~~~~~~v~L~V~  103 (106)
T cd05714          66 GDASLVITDLRLEDSGRYRCEVIDGIEDEQDTVELEVR  103 (106)
T ss_pred             CcceEEECCCCHHHCEEEEEEEEcCCCceEEEEEEEEE
Confidence            45689999999999999999999988888888888874

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.62  E-value=1.9e-07  Score=65.96  Aligned_cols=72  Identities=25%  Similarity=0.362  Sum_probs=49.8

Q ss_pred             cccCCCcEEEEEEeecC-CCCeeEEeeCCE-----Ec------------CCCCeeEeceEEecccceeEEEEEcccccCC
Q psy15667         13 TLQPGPAVSLKCIASGN-PTPDIGWTLDGF-----EL------------PTNNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~-----~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      ++.+|++++|.|...+. +...+.|++...     .+            ....|+....   .......+|.|.+++.+|
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~sL~I~~v~~~D   78 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR---DSSKSSFTLTISSLQPED   78 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE---eccCCEEEEEECCCCHHH
Confidence            57899999999999876 677899998432     11            0112332211   111123469999999999


Q ss_pred             CeEEEEEEEcCCE
Q psy15667         75 GGEYACVAENRAG   87 (286)
Q Consensus        75 ~G~Y~C~a~n~~g   87 (286)
                      +|.|.|.+.+..+
T Consensus        79 ~G~Y~C~v~~~~~   91 (105)
T cd00099          79 SAVYYCAVSLSGG   91 (105)
T ss_pred             CEEEEEEEecCCC
Confidence            9999999988654

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.61  E-value=2.2e-07  Score=63.90  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=48.8

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..+.+|+.+.|.|..  ..+...+.|+|+|.......    .........+.|.+|+.+|+|.|+|.+.|.
T Consensus        11 ~vV~~G~~VtL~C~~--~~~~~~f~l~k~g~~~~~~~----~~~~~~~~~f~i~~v~~~~~G~Y~C~~~~~   75 (91)
T cd05751          11 SVVPLGKPVTLRCQG--PYGAVEYRLYREGSTFAVKK----PPEPQNKAKFFIPSMKREHAGRYRCYYRSG   75 (91)
T ss_pred             CccCCCCcEEEEEec--CCCCCEEEEEECCCCccccc----cCCCceeEEEEccCCChhHCEEEEEEEECC
Confidence            447789999999975  35677899999998543210    111233567999999999999999999987

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.60  E-value=9.3e-07  Score=62.95  Aligned_cols=38  Identities=24%  Similarity=0.369  Sum_probs=33.9

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....|.|.+++.+|+|.|.|...+.+...+..+.|.|+
T Consensus        72 ~~asL~I~nl~~sDsG~Y~C~V~~g~~~~~~~v~l~v~  109 (112)
T cd05900          72 SDATLEITELRSNDSGTYRCEVMHGIEDNYDTVEVQVK  109 (112)
T ss_pred             CCcEEEEeecccccCEEEEEEEecCCCCceeEEEEEEE
Confidence            45789999999999999999999988888888888875

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.59  E-value=1.5e-06  Score=61.90  Aligned_cols=86  Identities=16%  Similarity=0.303  Sum_probs=51.9

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      ...+.+|++++|.|.+.+.+...+.|.+..+.              ....+.....           .++.. ....++.
T Consensus         7 ~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~--------------~~~~~l~~~~-----------~~~~~-~~~~r~~   60 (109)
T cd04983           7 SLSVQEGENVTLNCNYSTSTFYYLFWYRQYPG--------------QGPQFLIYIS-----------SNGEE-KEKGRFS   60 (109)
T ss_pred             ceEEcCCCCEEEEEEECCCCccEEEEEEECCC--------------CCeEEEEEEe-----------cCCCc-ccCCcEE
Confidence            45667899999999988877788889874321              0001111000           00000 1122333


Q ss_pred             eeec-CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        243 VSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       243 ~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +... ......|.|.+++.+|+|.|.|.+.+..
T Consensus        61 ~~~~~~~~~~~L~I~~~~~~DsG~Y~C~~~~~~   93 (109)
T cd04983          61 ATLDKSRKSSSLHISAAQLSDSAVYFCALSESG   93 (109)
T ss_pred             EEEcccCCEEEEEECCCCHHHCEEEEEEEecCC
Confidence            3221 1235689999999999999999999764

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.59  E-value=5.8e-07  Score=62.65  Aligned_cols=36  Identities=19%  Similarity=0.405  Sum_probs=31.6

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|.|.+.+ ..|.......|.|
T Consensus        61 ~~sL~I~~v~~~D~G~Y~C~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          61 DATISISNLRLEDEGNYICEFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             ceEEEEccCCcccCEEEEEEEEeCCCCcEEEEEEEEe
Confidence            56899999999999999999876 6788888888877

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.58  E-value=4.6e-07  Score=65.00  Aligned_cols=77  Identities=19%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             eccccccccCCCcEEEEEEeecC----CCCeeEEee---------------CCEEcC-CCC----eeEeceEEeccccee
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGN----PTPDIGWTL---------------DGFELP-TNN----RFVIGQFVSGHGDVI   62 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~----p~p~v~W~~---------------~~~~l~-~~~----~~~~~~~~~~~~~~~   62 (286)
                      +.+.+..+..|++++|.|.....    +..+|.|.+               +|.... ...    |....... ..++  
T Consensus         3 ~~~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~-~~~d--   79 (116)
T cd05879           3 YTDREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNP-SRKD--   79 (116)
T ss_pred             EccceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCC-CcCe--
Confidence            45677788999999999987763    346899943               233221 111    22100000 0122  


Q ss_pred             EEEEEcccccCCCeEEEEEEEcCC
Q psy15667         63 SHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+|.|.+++.+|+|.|+|.+.|..
T Consensus        80 aSI~I~nv~~sD~G~Y~C~v~n~p  103 (116)
T cd05879          80 GSIVIHNLDYTDNGTFTCDVKNPP  103 (116)
T ss_pred             eEEEEccCCcccCEEEEEEEEcCC
Confidence            368999999999999999999854

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.57  E-value=2.9e-07  Score=66.43  Aligned_cols=75  Identities=27%  Similarity=0.395  Sum_probs=51.7

Q ss_pred             eccccccccCCCcEEEEEEeec--CCCCeeEEeeC--CEEc------C-----------CCCeeEeceEEecccceeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASG--NPTPDIGWTLD--GFEL------P-----------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g--~p~p~v~W~~~--~~~l------~-----------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      ..+..+.+.+|++++|.|.+.+  .+.+.+.|++.  +..+      .           ...|+.+...   .......|
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~---~~~~~~~L   79 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKD---VGKSTSTL   79 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEE---CCCCEEEE
Confidence            3456678899999999999887  67788999985  2111      0           1234432111   11134569


Q ss_pred             EEcccccCCCeEEEEEEEc
Q psy15667         66 NISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          80 TIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             EEEECCHHHCEEEEEEEec
Confidence            9999999999999998754

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.57  E-value=2.7e-07  Score=63.96  Aligned_cols=71  Identities=27%  Similarity=0.459  Sum_probs=49.6

Q ss_pred             cCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCe-eEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         15 QPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNR-FVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~-~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      ..|+.++|.|.+.|. |. .+++|++||..+..... ....  ....+.  ..+.|.|......|.|.|+|++.+...
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~--~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~   86 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPV--PNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESL   86 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccc--cCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCC
Confidence            579999999999997 64 68999999999865433 1110  111121  123467777777799999999988643

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.54  E-value=2.6e-06  Score=61.39  Aligned_cols=36  Identities=22%  Similarity=0.384  Sum_probs=27.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccc--eeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQ--ARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~--~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|.|.+.|.-+.  ......|.|
T Consensus        79 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~~  116 (116)
T cd05715          79 DASIVIHNLQFTDNGTYTCDVKNPPDIVGKPGEIRLRV  116 (116)
T ss_pred             eeEEEEeeCCcccCEEEEEEEEeCCCCCCCccEEEEeC
Confidence            457999999999999999999987653  223455543

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.54  E-value=1.1e-06  Score=61.88  Aligned_cols=36  Identities=28%  Similarity=0.309  Sum_probs=30.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V  285 (286)
                      +++|.|.+++.+|+|.|+|.+.|.. .....+..|.|
T Consensus        69 ngSL~I~~v~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          69 NGSLLIQNVTQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CCcEEEecCCcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            5689999999999999999999987 56666666654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.52  E-value=4.4e-06  Score=59.94  Aligned_cols=99  Identities=15%  Similarity=0.247  Sum_probs=56.1

Q ss_pred             CceEEecCCCEEEEeeEeeec----CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYP----IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-  236 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p----~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~-  236 (286)
                      +.+.+..|+.+.|.|......    ...|.|...+....                         ....+.=+++|.... 
T Consensus         6 ~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~-------------------------~~~~v~~y~~g~~~~~   60 (116)
T cd05879           6 REVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSR-------------------------DAISIFHYGKGQPYID   60 (116)
T ss_pred             ceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCC-------------------------ccEEEEEeCCCceecc
Confidence            346677899999999997643    35788965331100                         000111122222211 


Q ss_pred             C----CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccce--eeEEEEEE
Q psy15667        237 P----RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQV  285 (286)
Q Consensus       237 ~----~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~~~~~L~V  285 (286)
                      .    ..++.+.-. ......|.|.+++.+|.|.|+|...|.-+..  ..++.|.|
T Consensus        61 ~~~~f~~Rv~f~g~~~~~daSI~I~nv~~sD~G~Y~C~v~n~p~~~~~~~~~~l~v  116 (116)
T cd05879          61 DVGPFKERIEWVGNPSRKDGSIVIHNLDYTDNGTFTCDVKNPPDIVGKSSQVTLYV  116 (116)
T ss_pred             cccCccCceEEeCCCCcCeeEEEEccCCcccCEEEEEEEEcCCCcCCceeEEEEEC
Confidence            0    012222111 1234679999999999999999999986533  34444543

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.51  E-value=2.4e-06  Score=61.44  Aligned_cols=27  Identities=22%  Similarity=0.426  Sum_probs=24.1

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ...|.|.+++.+|+|.|.|.+.|..+.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~  104 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDV  104 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCC
Confidence            557999999999999999999997664

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.51  E-value=1.4e-06  Score=60.07  Aligned_cols=36  Identities=19%  Similarity=0.375  Sum_probs=32.2

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                      ..+|.|.+++.+|+|.|+|...+ +.|..+.++.|+|
T Consensus        59 d~sl~i~nv~~~D~G~Y~C~v~tfP~G~~~~~~~l~~   95 (96)
T cd05887          59 DATIMLENVGFSDIGVYICKAVTFPLGNTQSSTTVTV   95 (96)
T ss_pred             ccEEEEeCCCccccEEEEEEEEeCCCCCeeEEEEEEE
Confidence            56899999999999999999655 6899999999987

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.48  E-value=9.4e-07  Score=61.08  Aligned_cols=75  Identities=20%  Similarity=0.340  Sum_probs=50.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+. ..+..+|.+|++|+|.|.... +.-.+.|+|+|.....  .+....   ..+.....|.|..++.+|+|.|.|..
T Consensus         2 P~l~-a~p~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~--~~~~~~---~~~~~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711           2 PFLS-AHPSPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPV--LHLYEK---HHGGFQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CEEE-ecCCCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCc--eecccc---cCCeEEEEEEecCCCcccCEEEEEEE
Confidence            4444 455778999999999997765 4567999999865321  110000   01122335889999999999999987


Q ss_pred             Ec
Q psy15667         83 EN   84 (286)
Q Consensus        83 ~n   84 (286)
                      ..
T Consensus        75 ~~   76 (94)
T cd05711          75 SY   76 (94)
T ss_pred             EC
Confidence            53

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.48  E-value=3.5e-06  Score=58.95  Aligned_cols=37  Identities=22%  Similarity=0.287  Sum_probs=32.6

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V~  286 (286)
                      ...|.|.+++.+|+|.|.|...| ..|..+..+.|.|.
T Consensus        63 ~~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V~  100 (100)
T cd05888          63 DGALILRNAVQADEGKYKCRVITFPAGNFEAELVLTVW  100 (100)
T ss_pred             ceEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEeC
Confidence            55799999999999999999999 67888888888873

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.46  E-value=1.9e-06  Score=59.67  Aligned_cols=81  Identities=20%  Similarity=0.288  Sum_probs=54.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCCe--eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-E
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPD--IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-E   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~--v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~   77 (286)
                      |-.+++.+....+.+|+.++|+|.+.| .|.+.  |.|++++..|... .+....  ........+|++. +..+|.| .
T Consensus         1 p~~V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~-~~~~~~--~~~~~~~stlt~~-~~r~D~g~~   76 (100)
T cd05755           1 PDSVELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQ-PFGDNT--KSPVNAPATITIT-VDREDHGAN   76 (100)
T ss_pred             CceEEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccc-eecccc--CCCceeEEEEEEe-cchhhCCcE
Confidence            445677777788899999999999886 68886  6999999988542 221100  0011122345554 5566666 9


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|+|.+..
T Consensus        77 ~sC~A~l~l   85 (100)
T cd05755          77 FSCETELDL   85 (100)
T ss_pred             EEEEEEecc
Confidence            999999854

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.46  E-value=6.1e-06  Score=58.77  Aligned_cols=37  Identities=22%  Similarity=0.345  Sum_probs=31.2

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ....|.|.+++.+|+|.|.|..............|.|
T Consensus        70 ~~asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V  106 (110)
T cd05878          70 GDASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEV  106 (110)
T ss_pred             CcEEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEE
Confidence            3567999999999999999999987766777777766

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.44  E-value=9.6e-07  Score=62.57  Aligned_cols=71  Identities=24%  Similarity=0.351  Sum_probs=44.4

Q ss_pred             CCCcEEEEEEeecCC------CCeeEEeeCC-----E-Ec--CCCCeeEec-e---EEe--cccceeEEEEEcccccCCC
Q psy15667         16 PGPAVSLKCIASGNP------TPDIGWTLDG-----F-EL--PTNNRFVIG-Q---FVS--GHGDVISHVNISHVTVEDG   75 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p------~p~v~W~~~~-----~-~l--~~~~~~~~~-~---~~~--~~~~~~~~l~I~~~~~~D~   75 (286)
                      .|++|+|.|.....+      .+.|.|++..     . .+  ..+.+.... +   ...  .......+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999987653      5689999862     1 11  111111100 0   000  0011234699999999999


Q ss_pred             eEEEEEEEcCC
Q psy15667         76 GEYACVAENRA   86 (286)
Q Consensus        76 G~Y~C~a~n~~   86 (286)
                      |.|.|.+.+..
T Consensus        81 G~Y~C~v~~~~   91 (106)
T cd05714          81 GRYRCEVIDGI   91 (106)
T ss_pred             EEEEEEEEcCC
Confidence            99999998754

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.44  E-value=2.7e-06  Score=60.65  Aligned_cols=89  Identities=18%  Similarity=0.305  Sum_probs=50.3

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.+.+ +.+.+.|.+..+.              +...+..-...  ....  . .++   ....++.
T Consensus         7 ~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g--------------~~~~~l~~~~~--~~~~--~-~~~---~~~~r~~   63 (110)
T cd05899           7 YLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPG--------------KGLQLLFYSNG--GSLN--E-EEG---DPKDRFS   63 (110)
T ss_pred             ceEEcCCCcEEEEEEECC-CCCEEEEEEECCC--------------CCcEEEEEEcC--CCce--E-ecC---ccCCceE
Confidence            456778999999999887 6678999874321              11111110000  0000  0 000   0111222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +.........|.|.+++++|+|.|.|.+.+..
T Consensus        64 ~~~~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          64 ASRPSLTRSSLTIKSAEPEDSAVYLCASSLGG   95 (110)
T ss_pred             EECcCCCccEEEECCCChhhCEEEEEEeeCCC
Confidence            22221234579999999999999999998753

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.43  E-value=1.8e-06  Score=62.06  Aligned_cols=79  Identities=27%  Similarity=0.371  Sum_probs=48.3

Q ss_pred             ccccccccCCCcEEEEEEeecCC----CCeeEEeeC----CEE--c---C------CCCeeEeceEEecc-cceeEEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLD----GFE--L---P------TNNRFVIGQFVSGH-GDVISHVNI   67 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~----~~~--l---~------~~~~~~~~~~~~~~-~~~~~~l~I   67 (286)
                      .+.++.+.+|++++|.|.....+    ...+.|++.    +.+  +   .      ...+|...-....+ .....+|.|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            46677899999999999866433    246999752    111  1   0      11122110000000 011245999


Q ss_pred             cccccCCCeEEEEEEEcCC
Q psy15667         68 SHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+++.+|+|.|.|.+.|..
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~  102 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPP  102 (115)
T ss_pred             eeCChhhCEEEEEEEEeCC
Confidence            9999999999999998753

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.43  E-value=3.8e-06  Score=58.44  Aligned_cols=36  Identities=17%  Similarity=0.338  Sum_probs=33.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|.|.|+|...| ..|..+..+.|.|
T Consensus        62 daSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          62 DGTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             cceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            46799999999999999999999 6898899999987

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.42  E-value=6.6e-07  Score=61.57  Aligned_cols=68  Identities=18%  Similarity=0.176  Sum_probs=45.9

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCC--------------CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPT--------------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--------------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |++|+|.|.....+...+.|+++......              ..++..  ......+  .+|.|.+++.+|+|.|.|++
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~--R~~~~~~--~sL~I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSG--RETIYPN--GSLLIQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCC--eEEEcCC--ceEEEccCCchhcEEEEEEE
Confidence            89999999887766778999987533210              011110  0111122  35999999999999999999


Q ss_pred             EcCCEE
Q psy15667         83 ENRAGT   88 (286)
Q Consensus        83 ~n~~g~   88 (286)
                      ....+.
T Consensus        77 ~~~~~~   82 (92)
T cd05741          77 ISTNGV   82 (92)
T ss_pred             EcCCCc
Confidence            886543

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.42  E-value=1.7e-06  Score=61.11  Aligned_cols=86  Identities=17%  Similarity=0.295  Sum_probs=50.4

Q ss_pred             EEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCCc
Q psy15667        165 TAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPV  241 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~~  241 (286)
                      .+..|++++|.|.+.+. +...+.|.+.....              ...+.+           .....+...  ....++
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~--------------~~~~i~-----------~~~~~~~~~~~~~~~r~   56 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGK--------------GPELLI-----------YISSNGSQYAGGVKGRF   56 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCC--------------CCEEEE-----------EEeCCCCccCccCCCcE
Confidence            46689999999998876 67778888754310              000111           111111000  011222


Q ss_pred             eeeecC-CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        242 NVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       242 ~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .+.... .....|.|.+++.+|+|.|.|.+.+..+
T Consensus        57 ~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~v~~~~~   91 (105)
T cd00099          57 SGTRDSSKSSFTLTISSLQPEDSAVYYCAVSLSGG   91 (105)
T ss_pred             EEEEeccCCEEEEEECCCCHHHCEEEEEEEecCCC
Confidence            222211 1345799999999999999999998664

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.41  E-value=2.9e-06  Score=60.18  Aligned_cols=38  Identities=18%  Similarity=0.360  Sum_probs=32.7

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...+|.|.+++.+|+|.|.|.........+..+.|.|.
T Consensus        70 ~~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          70 YNASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             ceEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            35789999999999999999999977777788888763

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.40  E-value=1.7e-06  Score=58.21  Aligned_cols=64  Identities=27%  Similarity=0.415  Sum_probs=41.4

Q ss_pred             cEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         19 AVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        19 ~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .++|.|.+.+ .|.+.++|++++++|.......    ....++   ....|.+.....+|.+.|+|+|.+..
T Consensus         1 ~~~L~C~~~~~~P~~~v~W~~~~~~l~~~~~~~----~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~   68 (82)
T cd05761           1 EVELTCTSSGSKPAATIRWFKGDKELKGVKLKE----EDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPA   68 (82)
T ss_pred             CEEEEEEecCcCcCCeEEEEECCEEccCceeeE----ecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChh
Confidence            3689999986 5889999999999986433111    111121   12335554444555579999998864

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.40  E-value=1.4e-06  Score=61.34  Aligned_cols=73  Identities=16%  Similarity=0.157  Sum_probs=49.0

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEE-----c----CC----------CCeeEeceEEecccceeEEEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE-----L----PT----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~-----l----~~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      +.+....+.+|++++|.|.....+...+.|+|....     +    +.          ..|..    ...++    +|.|
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~----~~~ng----SL~I   74 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRET----IYPNG----SLLI   74 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEE----EeCCC----cEEE
Confidence            345556788999999999665444458999995321     1    00          11111    11122    5899


Q ss_pred             cccccCCCeEEEEEEEcCCE
Q psy15667         68 SHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .+++..|+|.|+|++.+...
T Consensus        75 ~~v~~~D~G~Y~~~v~~~~~   94 (105)
T cd05774          75 QNVTQKDTGFYTLQTITTNF   94 (105)
T ss_pred             ecCCcccCEEEEEEEEeCCc
Confidence            99999999999999988653

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.39  E-value=2.3e-06  Score=61.68  Aligned_cols=78  Identities=22%  Similarity=0.327  Sum_probs=47.9

Q ss_pred             ccccccccCCCcEEEEEEeecCC----CCeeEEeeCCE------Ec--C--------CCCeeEeceEEecc-cceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLDGF------EL--P--------TNNRFVIGQFVSGH-GDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~~------~l--~--------~~~~~~~~~~~~~~-~~~~~~l~   66 (286)
                      .+.+..+.+|++++|.|......    ...+.|++...      .+  .        ...+|...-....+ .....+|.
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            46677889999999999876432    25699986321      11  0        11122100000000 01124699


Q ss_pred             EcccccCCCeEEEEEEEcC
Q psy15667         67 ISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~   85 (286)
                      |.+++.+|+|.|.|.+.|.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~  102 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNP  102 (116)
T ss_pred             EeeCCcccCEEEEEEEEeC
Confidence            9999999999999998874

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.39  E-value=3.3e-06  Score=58.76  Aligned_cols=37  Identities=22%  Similarity=0.319  Sum_probs=32.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V~  286 (286)
                      ...|.|.+++.+|+|.|.|...+ ..|..+..+.|+|.
T Consensus        60 ~~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v~   97 (97)
T cd05846          60 STSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTVY   97 (97)
T ss_pred             ccEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEEC
Confidence            56799999999999999999775 57888888889884

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.39  E-value=2.2e-06  Score=59.74  Aligned_cols=67  Identities=21%  Similarity=0.394  Sum_probs=46.2

Q ss_pred             cccCCCcEEEEEEeecC--CCCeeEEeeCCE--Ec---C---------CCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667         13 TLQPGPAVSLKCIASGN--PTPDIGWTLDGF--EL---P---------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~--~l---~---------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      ++.+|++++|.|...+.  ....+.|++...  .+   -         ..+|+...     .......|.|.+++.+|+|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~~~~Dsg   76 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS-----KSGNTASLTISGAQTEDEA   76 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE-----ccCCEEEEEECCCChhhCE
Confidence            57899999999998765  556799997421  11   0         01244321     1112346999999999999


Q ss_pred             EEEEEEEc
Q psy15667         77 EYACVAEN   84 (286)
Q Consensus        77 ~Y~C~a~n   84 (286)
                      .|.|.+.+
T Consensus        77 ~Y~C~~~~   84 (98)
T cd04984          77 DYYCQVWD   84 (98)
T ss_pred             EEEEEEcc
Confidence            99998765

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.39  E-value=2.5e-06  Score=56.73  Aligned_cols=64  Identities=28%  Similarity=0.408  Sum_probs=42.0

Q ss_pred             EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEEEEEcCC
Q psy15667         20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYACVAENRA   86 (286)
Q Consensus        20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~n~~   86 (286)
                      +.|.|.+.| .|+++|+|++++.+|........  .........+.|.+ ..+.+|.| .|+|+|.|..
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~l~~~~~~~~--~~~~~~t~~S~L~~-~p~~eDdG~~~~C~a~~~~   67 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKELTGKSTVEE--TWSRMFTVTSQLML-KVTKEDDGVPVICLVDHPA   67 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEECcCccccee--ccCCCcEEEEEEEE-ECchhhCCCEEEEEEcCcc
Confidence            689998775 79999999999999965422110  00111123445666 45555555 9999999964

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.39  E-value=3.3e-06  Score=56.72  Aligned_cols=65  Identities=22%  Similarity=0.372  Sum_probs=43.6

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.|.|.+..+.|.+.+.|+++|+.+.... .......    .....|.+.....+|.+.|+|.|.|....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~   70 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKELKGVK-LKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALK   70 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEEccCce-eeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcC
Confidence            46888888888889999999999885332 1111111    11334555555566678999999998753

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.37  E-value=2.6e-06  Score=59.22  Aligned_cols=36  Identities=14%  Similarity=0.240  Sum_probs=29.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|.|...+..|.. ...+.|.|
T Consensus        60 ~~sL~I~~~~~~DsG~Y~c~v~~~~~~~~~~~f~L~v   96 (97)
T cd05775          60 DYSLQISNLKMEDAGSYRAEINTKNGVTITKEFTLHI   96 (97)
T ss_pred             ceeEEECCCchHHCEEEEEEEEcCCCCeEEEEEEEEe
Confidence            4679999999999999999999887644 45555554

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.37  E-value=5.6e-06  Score=59.62  Aligned_cols=85  Identities=16%  Similarity=0.296  Sum_probs=50.3

Q ss_pred             ceEEecCCCEEEEeeEee--ecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC----C
Q psy15667        163 KVTAIDGEGLSIKCPVAG--YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL----S  236 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~--~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~----~  236 (286)
                      .+.+.+|++++|.|.+.+  .+.+.+.|.+..+.-.                         |.--+.+..++...    .
T Consensus         7 ~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~-------------------------~~~l~~~~~~~~~~~~~~~   61 (116)
T cd04982           7 SITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQA-------------------------LERLLYVSSTSTQRKLSGG   61 (116)
T ss_pred             eEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCC-------------------------CEEEEEEecCCCcEEeCcc
Confidence            345668999999999877  6777899988532110                         00001112111100    0


Q ss_pred             CCCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        237 PRFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       237 ~~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...++.+..... ....|.|.+++.+|+|.|.|.+..
T Consensus        62 ~~~r~~~~~~~~~~~~~L~I~~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          62 TKNKFEARKDVGKSTSTLTIQNLEKEDSATYYCAYWE   98 (116)
T ss_pred             cCCCEEEEEECCCCEEEEEEEECCHHHCEEEEEEEec
Confidence            112333332221 356899999999999999999874

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.36  E-value=2.9e-07  Score=60.43  Aligned_cols=58  Identities=36%  Similarity=0.670  Sum_probs=37.6

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.|.|.+..+.+.+.+.|+ +......   ............|.|.++..+|.|.|+|.|.|
T Consensus        18 ~~l~C~~~~~~~~~~~~W~-~~~~~~~---~~~~~~~~~~~~L~i~~v~~~~~g~y~C~a~N   75 (75)
T PF13927_consen   18 VTLTCSAEGGPPPPSISWY-DSNPSFN---SNSRGSSSSNSTLTISNVTRSDNGTYTCIASN   75 (75)
T ss_dssp             EEEEEEESSEESSEEEEEE-TEEEEEE---EEEEEEEEEEEEEEESSCCGGGTEEEEEEEEE
T ss_pred             EEEEEEEccccCCeEEEEE-ecCCcee---eeeeeccceeeEEEEccCCHHhCcEEEEEEEC
Confidence            7777776655557788888 1111000   00001112367899999999999999999998

...

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.33  E-value=6.4e-06  Score=58.29  Aligned_cols=84  Identities=15%  Similarity=0.224  Sum_probs=48.8

Q ss_pred             ceEEecCCCEEEEeeEeeec-CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYP-IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p-~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      .+.+.+|++++|.|.+.+.. ...+.|.+..+.              ....+..            +..+........++
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g--------------~~~~~l~------------~~~~~~~~~~~~r~   62 (106)
T cd04980           9 TLSVSPGESATISCKASQSVSSNYLAWYQQKPG--------------QAPKLLI------------YGASTLASGTPSRF   62 (106)
T ss_pred             cEEECCCCCEEEEEEECCCCCCCcEEEEEECCC--------------CCcEEEE------------ECccccCCCCCCCE
Confidence            45677899999999987655 567889874321              1111111            11110000001122


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ... .......|.|.+++.+|+|.|.|.+.+.
T Consensus        63 ~~~-~~~~~~~L~I~~~~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          63 SGS-GSGTDFTLTISRVEPEDAAVYYCQQYGT   93 (106)
T ss_pred             EEe-ccCCEEEEEECCCChHHCEEEEEEEeCC
Confidence            221 1123457999999999999999999764

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.32  E-value=4.6e-06  Score=60.06  Aligned_cols=77  Identities=23%  Similarity=0.347  Sum_probs=52.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEcc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +...+..+.+.+|++|+|.|..... ....+.|++.  +..   |         ..+.|+.+...   ......+|+|.+
T Consensus         2 v~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~I~~   78 (116)
T cd07706           2 VTQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQ---KAQKSISLTISA   78 (116)
T ss_pred             cEEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEe---ccCCEEEEEECC
Confidence            3456677889999999999987754 4567999973  211   1         11234433210   112234699999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|+|.|.|.+..
T Consensus        79 ~~~~Dsg~Y~C~~~~   93 (116)
T cd07706          79 LQLEDSAKYFCALST   93 (116)
T ss_pred             CCHHHCEEEEEEEEC
Confidence            999999999998875

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.32  E-value=3.3e-06  Score=59.05  Aligned_cols=70  Identities=19%  Similarity=0.303  Sum_probs=42.0

Q ss_pred             CCcEEEEEEeecCC---CCeeEEeeCCE--Ec--CCC-------------CeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667         17 GPAVSLKCIASGNP---TPDIGWTLDGF--EL--PTN-------------NRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus        17 G~~~~l~C~~~g~p---~p~v~W~~~~~--~l--~~~-------------~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      |++++|.|...+..   ...+.|++...  .+  ..+             +|+....  ........+|.|.+++.+|+|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~sL~I~~v~~~D~G   78 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLK--DAIAEGSVALRIHNVRASDEG   78 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeec--ccccCCcEEEEEEcCChhhCE
Confidence            78999999875321   23688887541  11  010             1211100  000011246999999999999


Q ss_pred             EEEEEEEcCCEE
Q psy15667         77 EYACVAENRAGT   88 (286)
Q Consensus        77 ~Y~C~a~n~~g~   88 (286)
                      .|.|.+.|..+.
T Consensus        79 ~Y~C~v~~~~~~   90 (100)
T cd05713          79 LYTCFFQSDGFY   90 (100)
T ss_pred             EEEEEEecCCcE
Confidence            999999986554

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.32  E-value=7.8e-06  Score=55.02  Aligned_cols=64  Identities=19%  Similarity=0.350  Sum_probs=44.1

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCC-----CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~-----~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +.|.|.+..+.|.+.|+|+++|+.+..... .+.....     ....|.|.....+|...|+|.|.+...
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~-~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l   70 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPT-SVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESL   70 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCcce-eEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECccc
Confidence            578888888888899999999998865322 1111111     123455555556788999999999864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.31  E-value=4.6e-06  Score=56.08  Aligned_cols=64  Identities=22%  Similarity=0.392  Sum_probs=41.2

Q ss_pred             EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      ++|.|.+.| .|...++|+|||..+........  . ...++   ..+.|.|..-..+|...|+|++.+..
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~--~-~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~   69 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKE--E-DANRKTFTVSSTLDFRVDRSDDGVAIICRVDHES   69 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEe--e-CCCCCEEEEEEEEEEEcccccCCCEEEEEEechh
Confidence            689999987 68889999999999854322111  0 11111   22345555444555669999998853

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.30  E-value=5.3e-06  Score=55.83  Aligned_cols=64  Identities=27%  Similarity=0.543  Sum_probs=41.8

Q ss_pred             EEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         20 VSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        20 ~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      ++|.|.+.| .|.+.|+|++||++|...... .  .....+..   ...|.|.-...+|...|+|+|.+..
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g~~l~~~~~~-~--~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGDQELEGAPTS-V--LEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECCEECCCccee-E--EECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcc
Confidence            689999987 599999999999998654321 1  11112222   1335454444556679999999864

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.30  E-value=4e-06  Score=59.32  Aligned_cols=69  Identities=23%  Similarity=0.377  Sum_probs=44.3

Q ss_pred             CCCcEEEEEEeecCC------CCeeEEeeCCE------E-c-CC----------CCeeEeceEEecccceeEEEEEcccc
Q psy15667         16 PGPAVSLKCIASGNP------TPDIGWTLDGF------E-L-PT----------NNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p------~p~v~W~~~~~------~-l-~~----------~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .|++|+|.|.....|      ...|.|+|...      . + ..          .+|+...    .......+|.|.+++
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~----~~~~~~~sL~I~~v~   76 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLR----RAHDLDASLVITDLR   76 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEec----CCCCCcEEEEEccCC
Confidence            489999999877653      35799998631      0 1 00          1122110    000112369999999


Q ss_pred             cCCCeEEEEEEEcCCEE
Q psy15667         72 VEDGGEYACVAENRAGT   88 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~   88 (286)
                      .+|+|.|.|.+.+..+.
T Consensus        77 ~~DsG~Y~C~v~~~~~~   93 (106)
T cd05877          77 LEDYGRYRCEVIDGLED   93 (106)
T ss_pred             hHHCEEEEEEEEecccc
Confidence            99999999999875543

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.30  E-value=3.9e-06  Score=57.67  Aligned_cols=35  Identities=23%  Similarity=0.236  Sum_probs=26.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQ  284 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~  284 (286)
                      +..|.|.+++.+|+|.|+|...+..| .....+.|.
T Consensus        56 ~~sL~I~~l~~~DsG~Y~c~v~~~~~~~~~~~~~l~   91 (92)
T cd05741          56 NGSLLIQNLTKEDSGTYTLQIISTNGVTENAKFFLR   91 (92)
T ss_pred             CceEEEccCCchhcEEEEEEEEcCCCcEEEEEEEEE
Confidence            36899999999999999999998864 333334343

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.27  E-value=1.3e-05  Score=59.74  Aligned_cols=85  Identities=20%  Similarity=0.312  Sum_probs=52.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCC-----CCeeEeceEEecccc--eeEEEEEccccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPT-----NNRFVIGQFVSGHGD--VISHVNISHVTV   72 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~-----~~~~~~~~~~~~~~~--~~~~l~I~~~~~   72 (286)
                      ||.+...+......+|+.++|.|.+.|. |+ ++|.|+++|.....     +...........++.  ..+.|.|..-..
T Consensus        38 ~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~dgt~~~~s~L~v~~~~~  117 (139)
T cd05771          38 PPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTREPPGDSPPPVSLSNVSFSSHRQHQDGTYSLSSHLTLEPGTE  117 (139)
T ss_pred             CCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEECCCCCccceeccCCeEecceEeCCCCCEEEEEEEEecCCcc
Confidence            6788776665555589999999999996 54 48999999865221     111100000111222  124466665555


Q ss_pred             CCCeEEEEEEEcCC
Q psy15667         73 EDGGEYACVAENRA   86 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~   86 (286)
                      ++.+.|+|.+....
T Consensus       118 ~~g~~ytC~V~H~~  131 (139)
T cd05771         118 DAGATYTCRVSHVS  131 (139)
T ss_pred             CCCCEEEEEEEcCC
Confidence            55679999997753

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.27  E-value=5.3e-06  Score=57.51  Aligned_cols=73  Identities=16%  Similarity=0.236  Sum_probs=50.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCe--EEEEeCCeeCCCCCCcee-eecCCCeeeEEEcccCCCCCe-EEEEEEEecccc
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQ  276 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~--~~W~~~g~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~  276 (286)
                      ..+.+|+.+.|.|.+..+.|.+.  |.|+|++..+........ ........+|.+. +..+|.| .|+|.|.+.++.
T Consensus        11 ~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~l~~~~~~~~~~~~~~~~stlt~~-~~r~D~g~~~sC~A~l~l~~   87 (100)
T cd05755          11 SWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNETLSRQPFGDNTKSPVNAPATITIT-VDREDHGANFSCETELDLRP   87 (100)
T ss_pred             CcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEEcccceeccccCCCceeEEEEEEe-cchhhCCcEEEEEEEeccCc
Confidence            34679999999999999999987  699999998854321110 0011224566665 4455555 999999998764

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.27  E-value=1.4e-05  Score=55.07  Aligned_cols=79  Identities=20%  Similarity=0.353  Sum_probs=47.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+........   |+.++|.|.+.|. |.. .++|.++|+.+.......  ......++.......-.+...|.+.|+
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~--~~~~~~d~ty~~~s~l~v~~~~~~~yt   76 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESG--EILPNGDGTYQLWVTLEVPPEDKARYS   76 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCCcEEEEEECCEECccccccc--ceEECCCCeEEEEEEEEECCCCCCEEE
Confidence            788876665544   7899999999995 544 899999996443221110  011111222212222333444788999


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |.+...
T Consensus        77 C~V~H~   82 (93)
T cd07698          77 CRVEHS   82 (93)
T ss_pred             EEEEeC
Confidence            998764

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.20  E-value=8.2e-06  Score=58.10  Aligned_cols=68  Identities=19%  Similarity=0.399  Sum_probs=42.1

Q ss_pred             CCCcEEEEEEeecCC------------CCeeEEeeC--CE--E-c-CCC----------CeeEeceEEecccceeEEEEE
Q psy15667         16 PGPAVSLKCIASGNP------------TPDIGWTLD--GF--E-L-PTN----------NRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p------------~p~v~W~~~--~~--~-l-~~~----------~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      .|++|+|.|.....+            .+.|.|+|.  |.  . + ...          +|+.........+  ..+|+|
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~--~asL~I   78 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPS--DATLEI   78 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCC--CcEEEE
Confidence            489999999876532            468999984  21  1 1 011          1221100000112  246999


Q ss_pred             cccccCCCeEEEEEEEcC
Q psy15667         68 SHVTVEDGGEYACVAENR   85 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+++.+|+|.|.|.+...
T Consensus        79 ~nl~~sDsG~Y~C~V~~g   96 (112)
T cd05900          79 TELRSNDSGTYRCEVMHG   96 (112)
T ss_pred             eecccccCEEEEEEEecC
Confidence            999999999999998753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.20  E-value=4.8e-05  Score=54.24  Aligned_cols=38  Identities=21%  Similarity=0.330  Sum_probs=34.2

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...+|.|.+++.+|+|.|.|...+.....+.+..|.|+
T Consensus        77 g~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          77 GDASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             CceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            46789999999999999999999999888888888874

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.20  E-value=3.9e-05  Score=52.61  Aligned_cols=80  Identities=19%  Similarity=0.299  Sum_probs=48.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.+...+ .+..|+..+|.|.+.|. | .-.|+|.+||+.+. +..  ........+.......--.+...+...|+
T Consensus         1 pP~v~v~~~~-~~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~~~-~~~--~~~~~p~~d~tyq~~s~l~~~~~~~~~ys   76 (93)
T cd05770           1 TPKVQVYSRF-PAENGKPNVLNCYVTGFHPPDIEIRLLKNGVKIP-KVE--QSDLSFSKDWTFYLLKSTEFTPTKGDEYA   76 (93)
T ss_pred             CCEEEEEecC-CCcCCCceEEEEEEEEEeCCCCEEEEEECCEECC-CcE--ECcEEECCCCCEEEEEEEEECCCCCCeEE
Confidence            6777754433 45668888999999994 3 34779999999986 322  11221222222211222234556777999


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |++.-.
T Consensus        77 C~V~H~   82 (93)
T cd05770          77 CRVRHN   82 (93)
T ss_pred             EEEEEC
Confidence            988753

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.19  E-value=4.5e-06  Score=63.56  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=47.5

Q ss_pred             ccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEc----CCCC--------eeEeceEEecccceeEEEEEcccccCCCe
Q psy15667         10 IEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFEL----PTNN--------RFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l----~~~~--------~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      -..++.+|++++|.|... +...++|.|.|+...+    +.+.        |+..    .........|+|.+++.+|+|
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~----mS~s~~~StItIknVt~sDeG   98 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEY----LSKSFNESTILIKNVSLKDNG   98 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEE----eccCCCcceEEEEeCChhhCe
Confidence            356789999999999874 6567889999874322    1111        2210    001112246899999999999


Q ss_pred             EEEEEEE
Q psy15667         77 EYACVAE   83 (286)
Q Consensus        77 ~Y~C~a~   83 (286)
                      .|.|...
T Consensus        99 cY~C~F~  105 (189)
T PHA02987         99 CYTCIFN  105 (189)
T ss_pred             EEEEEEE
Confidence            9999864

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.19  E-value=9e-06  Score=57.64  Aligned_cols=68  Identities=25%  Similarity=0.375  Sum_probs=44.3

Q ss_pred             cccCCCcEEEEEEeecC-CCCeeEEeeCCEE---------c--CC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         13 TLQPGPAVSLKCIASGN-PTPDIGWTLDGFE---------L--PT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~---------l--~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ++++|++++|.|...+. ....+.|++....         +  ..           ..++....   ........|+|.+
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L~I~~   78 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRV---TSDSSRYRLHINR   78 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEE---ECCCCEEEEEECC
Confidence            57899999999998764 3457999974221         0  00           12222110   1112234699999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+|.|.|...
T Consensus        79 ~~~~Dsg~YyCa~~   92 (107)
T cd07700          79 VKPEDSGTYFCMTV   92 (107)
T ss_pred             CCHHHCEEEEEeEc
Confidence            99999999999864

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.17  E-value=2.3e-05  Score=54.60  Aligned_cols=81  Identities=19%  Similarity=0.235  Sum_probs=46.9

Q ss_pred             EecCCCEEEEeeEeee--cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGY--PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~--p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|++++|.|...+.  ....+.|.+..+.-.                         |..-+.+..+.. .....++..
T Consensus         3 v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~-------------------------~~~l~~~~~~~~-~~~~~rf~~   56 (98)
T cd04984           3 VSPGETVTITCTGSSGNISGNYVNWYQQKPGSA-------------------------PRYLIYEDSDRP-SGIPDRFSG   56 (98)
T ss_pred             cCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCC-------------------------ccEEEEeccccC-CCCCCCEEE
Confidence            4579999999988764  456788987442210                         111111111100 000112222


Q ss_pred             eecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        244 SDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       244 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .. ......|.|.+++++|+|.|.|.+.+.
T Consensus        57 ~~-~~~~~~L~I~~~~~~Dsg~Y~C~~~~~   85 (98)
T cd04984          57 SK-SGNTASLTISGAQTEDEADYYCQVWDS   85 (98)
T ss_pred             Ec-cCCEEEEEECCCChhhCEEEEEEEccC
Confidence            21 223557999999999999999998764

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.16  E-value=2.7e-05  Score=53.72  Aligned_cols=34  Identities=18%  Similarity=0.230  Sum_probs=27.9

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEec-ccceeeEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNT-AAQARYSSKL  283 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~-~g~~~~~~~L  283 (286)
                      ..+|.|.+++.+|+|.|+|...+. .|..+....|
T Consensus        59 d~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          59 DMSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             ccEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            468999999999999999998874 6776666554

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.16  E-value=2.1e-05  Score=60.00  Aligned_cols=92  Identities=18%  Similarity=0.250  Sum_probs=55.9

Q ss_pred             eEEecCCCEEEEeeEe-eecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC--CC
Q psy15667        164 VTAIDGEGLSIKCPVA-GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR--FP  240 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~-~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~--~~  240 (286)
                      ..+.+|++++|.|... +...+.|.|.+....+.               .+.               ..|..+.+.  ++
T Consensus        25 v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~Ia---------------tY~---------------~~g~~i~~~Fk~R   74 (189)
T PHA02987         25 ITVSEHVNVKISCNKTSSFNSILITWKKNNKTIA---------------GYG---------------PCGPVIVDKFKNK   74 (189)
T ss_pred             EEEcCCCCEEEEEecCCCCccceEEEEEcCCCEE---------------EEe---------------cCCcEEChhhcCe
Confidence            4567888899999874 55677788877421111               000               111122221  23


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEec-cc-ceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT-AA-QARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~-~g-~~~~~~~L~V  285 (286)
                      +.+.........|.|.+++.+|+|.|+|.-.-- .| ..+.++-|.|
T Consensus        75 ve~mS~s~~~StItIknVt~sDeGcY~C~F~tfp~G~~~~gt~CLtV  121 (189)
T PHA02987         75 IEYLSKSFNESTILIKNVSLKDNGCYTCIFNTLLSKNNEKGVVCLNV  121 (189)
T ss_pred             EEEeccCCCcceEEEEeCChhhCeEEEEEEEecCCCCCceeEEEEEE
Confidence            333222233568999999999999999986653 45 6666666766

>PHA03376 BARF1; Provisional

Probab=98.16  E-value=0.00015  Score=55.25  Aligned_cols=74  Identities=19%  Similarity=0.354  Sum_probs=39.7

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEe-cCCCEEEEeeEeeecCCeEEEEE
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAI-DGEGLSIKCPVAGYPIEEVHWEK  190 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~-~g~~~~l~c~~~~~p~~~v~w~~  190 (286)
                      .-+|.|.++..+|.|.|.|............ -.|++..+-......+..-+ .-....+.|.+.|+|.|.+.|..
T Consensus        86 nvsLvI~~l~lSDdGtY~C~fQkge~~~~k~-ehLt~V~~~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wle  160 (221)
T PHA03376         86 TFFLVVTAANISHDGNYLCRMKLGETEVTKQ-EHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLM  160 (221)
T ss_pred             eEEEEEEeeeecCCceEEEEEEcCCCceeee-eeeeeeecceEEEEeccccCCCCCeeEEEEecCCcCCchheecc
Confidence            3568888999999999999888755443221 12222110000000000001 12234677887777888888865

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.15  E-value=1.2e-05  Score=55.65  Aligned_cols=70  Identities=29%  Similarity=0.450  Sum_probs=44.9

Q ss_pred             CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC-ceeeec-C---CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-VNVSDL-D---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~-~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .|+.+.|.|.+....| .+.++|+++|..+..... ...... +   .....|.|......|.|.|+|.+.+....
T Consensus        12 ~~~~~~L~C~a~g~~P~~~~i~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          12 LGGSVTLTCLATGFYPPDITVTWLKNGKELTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             cCCCeEEEEEEeeEECCCcEEEEEECCEECCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            5667777777765444 478999999988754432 111111 1   11334666666667999999999997653

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.15  E-value=1.3e-05  Score=53.85  Aligned_cols=66  Identities=18%  Similarity=0.349  Sum_probs=44.5

Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.|.|.+..+.|+..++|+|+|+.+............    .....|.+..-...|...|+|.+.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDKEIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCEECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            5688888878888999999999987543211111111    11345666655567789999999997643

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.14  E-value=8.9e-06  Score=56.54  Aligned_cols=68  Identities=21%  Similarity=0.341  Sum_probs=39.7

Q ss_pred             CCcEEEEEEeecCCC-CeeEEeeCCE----Ec----C-C----CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667         17 GPAVSLKCIASGNPT-PDIGWTLDGF----EL----P-T----NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus        17 G~~~~l~C~~~g~p~-p~v~W~~~~~----~l----~-~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |++++|.|....... -.|.|+|...    .+    . .    .+.+..............+|+|.+++.+|+|.|.|..
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            789999998664432 3699998532    11    0 0    0111100000001112246999999999999999987


Q ss_pred             Ec
Q psy15667         83 EN   84 (286)
Q Consensus        83 ~n   84 (286)
                      ..
T Consensus        81 ~~   82 (97)
T cd05846          81 NT   82 (97)
T ss_pred             Ee
Confidence            53

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.14  E-value=4e-06  Score=58.32  Aligned_cols=71  Identities=18%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             cCCCcEEEEEEeec-CCCCeeEEeeCCEEcC--C-----------CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667         15 QPGPAVSLKCIASG-NPTPDIGWTLDGFELP--T-----------NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus        15 ~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~--~-----------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ..|++|+|.|.... .....+.|++....+.  .           +.++..  ......+ ..+|+|.+++.+|+|.|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~--R~~~~~~-~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKE--RVNFSQN-DYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCcee--eEEecCC-ceeEEECCCchHHCEEEEE
Confidence            36999999997754 4456899998643221  1           111111  1111121 2369999999999999999


Q ss_pred             EEEcCCEE
Q psy15667         81 VAENRAGT   88 (286)
Q Consensus        81 ~a~n~~g~   88 (286)
                      .+.+..|.
T Consensus        79 ~v~~~~~~   86 (97)
T cd05775          79 EINTKNGV   86 (97)
T ss_pred             EEEcCCCC
Confidence            98876543

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.14  E-value=6e-05  Score=54.24  Aligned_cols=85  Identities=19%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             ceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      .+.+.+|++++|.|..... ....+.|.+..+.              ....+.-            ...+........++
T Consensus         8 ~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~--------------~~~~~l~------------~~~~~~~~~~~~R~   61 (116)
T cd07706           8 DVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPS--------------GEMTFLI------------RQKSIYGNATKGRY   61 (116)
T ss_pred             ceEEcCCCCEEEEEEEeCCCCceEEEEEEECCC--------------CceEEEE------------EecCccCCccCCeE
Confidence            4567789999999988754 4456889885321              1100000            00000000011233


Q ss_pred             eeee-cCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .+.. .......|.|.+++.+|+|.|.|...+.
T Consensus        62 ~~~~~~~~~~~sL~I~~~~~~Dsg~Y~C~~~~~   94 (116)
T cd07706          62 SVNFQKAQKSISLTISALQLEDSAKYFCALSTL   94 (116)
T ss_pred             EEEEeccCCEEEEEECCCCHHHCEEEEEEEECC
Confidence            3332 1223457999999999999999998853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.13  E-value=1e-05  Score=56.24  Aligned_cols=63  Identities=21%  Similarity=0.353  Sum_probs=39.9

Q ss_pred             CcEEEEEEeecCC---CCeeEEeeCCEE----c-----------CC--CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         18 PAVSLKCIASGNP---TPDIGWTLDGFE----L-----------PT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        18 ~~~~l~C~~~g~p---~p~v~W~~~~~~----l-----------~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ++|+|.|.....+   ...|.|+|....    +           ..  ..|...    ........+|.|.+++.+|+|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~----~~~~~~~~sL~I~~v~~~D~G~   76 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSF----LNSSLEDATISISNLRLEDEGN   76 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEE----eCCCCCceEEEEccCCcccCEE
Confidence            5799999887654   447999986431    0           00  011100    0000012469999999999999


Q ss_pred             EEEEEEc
Q psy15667         78 YACVAEN   84 (286)
Q Consensus        78 Y~C~a~n   84 (286)
                      |.|.+.+
T Consensus        77 Y~C~v~~   83 (98)
T cd05718          77 YICEFAT   83 (98)
T ss_pred             EEEEEEe
Confidence            9999864

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.12  E-value=7.9e-06  Score=56.93  Aligned_cols=71  Identities=20%  Similarity=0.296  Sum_probs=47.1

Q ss_pred             ccccCCCcEEEEEEeec-CCCCeeEEeeCCEE-----c--------CCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIASG-NPTPDIGWTLDGFE-----L--------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~-----l--------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +++.+|++|+|.|.... .+...+.|+|....     |        ....|+.+..   ........|.|.+++.+|+|.
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~v~~~DsG~   78 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTD---DPDNGVFTVTLNQLRKEDAGW   78 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEe---cCCCCEEEEEEcCCCHHHCEE
Confidence            35789999999998765 35567899975321     1        0123333211   111223469999999999999


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |.|.+...
T Consensus        79 Y~C~~~~~   86 (98)
T cd05716          79 YWCGVGDD   86 (98)
T ss_pred             EEEEcccC
Confidence            99987664

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.11  E-value=8e-05  Score=51.23  Aligned_cols=79  Identities=20%  Similarity=0.415  Sum_probs=46.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+...+ ....|+.++|.|.+.|. |. -.++|.+||+.+..+... .......++..  ...|.|.   .++...
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~~~~~~~~-~~~~~~~Dgty~~~s~L~v~---~~~~~~   75 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPVLNVTWLKNGVPVTDGVSE-TRYYPRQDLSFQKFSYLNFT---PEEGDI   75 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCcCEEEEEECCeEccCceEE-eeeEeCCCCcEEEEEEEEEE---CCCCCe
Confidence            6777765544 34557778999999994 43 478999999988643211 11111111211  1234443   345569


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        76 ytC~V~H~   83 (94)
T cd05767          76 YSCIVEHW   83 (94)
T ss_pred             EEEEEEeC
Confidence            99988654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.10  E-value=3.8e-05  Score=51.19  Aligned_cols=75  Identities=15%  Similarity=0.310  Sum_probs=48.1

Q ss_pred             CCCCCCCeEEEEEeeecC-CCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        203 DGLPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      ..+..|+.+.|.|....+ .|.++++|.-.+...-.       .......+|.+..++..|+|.++|...-..-.....+
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-------~~~~~~ktL~~~qv~~qdSG~WtC~V~~~~k~~~~~~   81 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-------ILNQDKKTLNLVQLGPNDSGTWDCIVSVNSSEKTLKL   81 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-------eccCCccEEEeceeCcccCCEEEEEEEECceEEEEEe
Confidence            346678888888887443 44568999865543211       0112345899999999999999999864333333333


Q ss_pred             EEE
Q psy15667        282 KLQ  284 (286)
Q Consensus       282 ~L~  284 (286)
                      .+.
T Consensus        82 ~V~   84 (88)
T cd07694          82 DIK   84 (88)
T ss_pred             eEE
Confidence            343

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd00096 Ig Immunoglobulin domain

Probab=98.08  E-value=2.9e-05  Score=49.41  Aligned_cols=66  Identities=42%  Similarity=0.718  Sum_probs=44.9

Q ss_pred             EEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        20 ~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      +.|.|.+.+.+...+.|++++........... ............|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRV-RSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEe-ccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            47899999878889999998876543221000 0000111223458999999999999999998865

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.07  E-value=3.6e-05  Score=54.99  Aligned_cols=84  Identities=18%  Similarity=0.343  Sum_probs=51.4

Q ss_pred             CCCeeEeccccc-cccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCC
Q psy15667          1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVED   74 (286)
Q Consensus         1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D   74 (286)
                      +||.+.+-++.. .+.+++.++|.|.+.|. |. -.|+|++||+.+..+..... .....+++.   .+.|.|......|
T Consensus         1 ~~P~V~v~~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~-~~~~~~~gTYs~~S~L~v~~~~w~~   79 (115)
T cd05769           1 TPPTVAIFPPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDP-QALRENTSTYSISSRLRVSATEWFN   79 (115)
T ss_pred             CCCEEEEECcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCccccc-ceecCCCCeEEEEEEEEEChHHhcc
Confidence            578777554443 56678889999999984 55 38899999998864321100 001111121   2346666555444


Q ss_pred             -CeEEEEEEEcC
Q psy15667         75 -GGEYACVAENR   85 (286)
Q Consensus        75 -~G~Y~C~a~n~   85 (286)
                       ...|+|.+.-.
T Consensus        80 ~~~~ytC~V~H~   91 (115)
T cd05769          80 PRNTFTCIVQFY   91 (115)
T ss_pred             CCCeEEEEEEEe
Confidence             45999988653

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.07  E-value=2.5e-05  Score=54.36  Aligned_cols=26  Identities=15%  Similarity=0.265  Sum_probs=22.4

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ....|.|.+++.+|+|.|.|.+.+..
T Consensus        62 ~~~~L~I~~v~~~DsG~Y~C~~~~~~   87 (98)
T cd05716          62 GVFTVTLNQLRKEDAGWYWCGVGDDG   87 (98)
T ss_pred             CEEEEEEcCCCHHHCEEEEEEcccCC
Confidence            34579999999999999999888754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.07  E-value=2e-05  Score=55.53  Aligned_cols=67  Identities=19%  Similarity=0.351  Sum_probs=44.5

Q ss_pred             cccCCCcEEEEEEeecCCCCeeEEeeCCE----E---c---CC------------CCeeEeceEEecccceeEEEEEccc
Q psy15667         13 TLQPGPAVSLKCIASGNPTPDIGWTLDGF----E---L---PT------------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~----~---l---~~------------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .+.+|++|+|.|.....-...+.|++...    .   |   ..            ..|+..+     .......|.|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~-----~~~~~~~L~I~~~   76 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGS-----RSSNSFVLTLKNF   76 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEE-----ecCCEEEEEECCC
Confidence            57899999999988655445699997431    1   1   11            1122110     1123346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|+|.|.+.+
T Consensus        77 ~~sDsgtY~Ca~~~   90 (104)
T cd05720          77 QKENEGYYFCSVAS   90 (104)
T ss_pred             CHHHCEEEEEEEcc
Confidence            99999999998653

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=98.05  E-value=0.0001  Score=50.85  Aligned_cols=71  Identities=24%  Similarity=0.354  Sum_probs=41.7

Q ss_pred             ccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccc-eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         12 QTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD-VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..+..|+.++|.|.+.|. |.. .++|++||+.+..+...  .... .+++ .......-.+...+...|+|.+.-.
T Consensus         9 ~~~~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~--~~~~-~~~dgTy~~~s~L~~~~~~~~~ysC~V~H~   82 (94)
T cd05766           9 QTGSLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVS--TELI-PNGDWTYQILVMLETTPSRGDTYTCVVEHS   82 (94)
T ss_pred             CCccCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCcee--cceE-ECCCCcEEEEEEEEEcCCCCCEEEEEEEeC
Confidence            444578999999999994 544 78999999987653111  1111 1222 1111111223344566999988764

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.04  E-value=3.7e-05  Score=53.07  Aligned_cols=66  Identities=20%  Similarity=0.353  Sum_probs=43.9

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ..+.+|+.+.|.|....  ....+.|+|+|....... ............+.|..++.+|+|.|.|...
T Consensus        10 ~vV~~G~~VTL~C~~~~--~~~~f~l~k~g~~~~~~~-~~~~~~~~~~a~f~I~~~~~~~~G~Y~C~~~   75 (94)
T cd05711          10 PVVPSGENVTLQCHSDI--RFDRFILYKEGRSKPVLH-LYEKHHGGFQASFPLGPVTPAHAGTYRCYGS   75 (94)
T ss_pred             CccCCCCeEEEEEecCC--CCCEEEEEECCCCCCcee-cccccCCeEEEEEEecCCCcccCEEEEEEEE
Confidence            34678888888886542  446789999987532210 0000011234578999999999999999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.02  E-value=1.5e-05  Score=56.82  Aligned_cols=75  Identities=20%  Similarity=0.312  Sum_probs=49.9

Q ss_pred             ccccccccCCCcEEEEEEee-cCCCCeeEEeeCCE-----EcC---C-----------CCeeEeceEEecccceeEEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGF-----ELP---T-----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~-----~l~---~-----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      .+....+.+|+++.|.|... ......+.|++...     .+.   .           ..++..   .........+|.|
T Consensus         7 ~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~---~~~~~~~~~sL~i   83 (114)
T PF07686_consen    7 PPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTF---SGNGSQNNFSLTI   83 (114)
T ss_dssp             EESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEE---EEETTTTEEEEEE
T ss_pred             eCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeee---eecccCCeEEEEE
Confidence            45667889999999999988 55667899998321     111   0           011111   0001112346999


Q ss_pred             cccccCCCeEEEEEEEcC
Q psy15667         68 SHVTVEDGGEYACVAENR   85 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+++.+|+|.|.|.+...
T Consensus        84 ~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SSESGGGEEEEEEEEEES
T ss_pred             CCCCcCcCEEEEEEEEEC
Confidence            999999999999998775

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.02  E-value=4.4e-05  Score=53.33  Aligned_cols=83  Identities=14%  Similarity=0.279  Sum_probs=51.0

Q ss_pred             CCeeEeccccc-cccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQ-TLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~-~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G   76 (286)
                      ||.+...+... .+..++.++|.|.+.|. | ...|+|++||+.+..+.. ........++.  ....|.+..-...+..
T Consensus         1 pP~V~v~~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~-~~~~~~~~dgty~~~s~L~v~~~~w~~~~   79 (100)
T cd07699           1 APSVTIFPPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQ-TSTTEQQSDNTYSLSSYLTLTKSDWNKHK   79 (100)
T ss_pred             CCeEEEECCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEe-ccccEECCCCCEEEEEEEEEcHHHhCCCC
Confidence            56666555554 55688999999999984 4 457899999999853211 00001111221  1233555555555567


Q ss_pred             EEEEEEEcC
Q psy15667         77 EYACVAENR   85 (286)
Q Consensus        77 ~Y~C~a~n~   85 (286)
                      .|+|.+.-.
T Consensus        80 ~~sC~V~H~   88 (100)
T cd07699          80 VYTCEVTHE   88 (100)
T ss_pred             eEEEEEEec
Confidence            999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.99  E-value=0.0001  Score=52.39  Aligned_cols=98  Identities=23%  Similarity=0.345  Sum_probs=58.4

Q ss_pred             ceEEecCCCEEEEeeEe-eecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe----eCCC
Q psy15667        163 KVTAIDGEGLSIKCPVA-GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK----PLSP  237 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~-~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~----~~~~  237 (286)
                      .+.+.+|+++.|.|... ......+.|.+..+...              ..+.           +.+..+..    ....
T Consensus        10 ~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~--------------~~~i-----------~~~~~~~~~~~~~~~~   64 (114)
T PF07686_consen   10 PVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQG--------------PQLI-----------IRYSLSSTNETPTPSY   64 (114)
T ss_dssp             EEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSE--------------EEEE-----------EEEETTEEEEEEETTE
T ss_pred             eEEEecCCCEEEEEEEeCCCCcceEEEEEECcccc--------------ceee-----------eeeccceeeeccccce
Confidence            35667899999999998 44566788987432110              0000           00111100    0011


Q ss_pred             CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEec-ccceeeEEEEEE
Q psy15667        238 RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT-AAQARYSSKLQV  285 (286)
Q Consensus       238 ~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~-~g~~~~~~~L~V  285 (286)
                      ..+..+... ......|.|.+++.+|+|.|.|..... .......+.|.|
T Consensus        65 ~~r~~~~~~~~~~~~sL~i~~l~~~DsG~Y~C~v~~~~~~~~~~~~~L~V  114 (114)
T PF07686_consen   65 SGRFTFSGNGSQNNFSLTIKNLQPSDSGTYFCQVSTSNEQSFGNGTKLTV  114 (114)
T ss_dssp             TTTEEEEEETTTTEEEEEESSESGGGEEEEEEEEEESSEEEEEEEEEEEE
T ss_pred             eeeeeeeecccCCeEEEEECCCCcCcCEEEEEEEEECCCCEECCcEEEEC
Confidence            122332221 234568999999999999999999887 556666666765

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.99  E-value=2.5e-05  Score=53.28  Aligned_cols=67  Identities=33%  Similarity=0.541  Sum_probs=41.2

Q ss_pred             CCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         17 GPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        17 G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      |+.+.|.|.+. |.|+|.++|+.++..+.... ..  .......+   ..+.|.+..-..++...++|.|.+..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~-~~--~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASN-TT--QSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEE-EE--EEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETT
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeee-ee--eeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCc
Confidence            78999999655 68999999999988771111 10  11111222   22346665444445569999998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=97.99  E-value=3.5e-05  Score=54.86  Aligned_cols=70  Identities=26%  Similarity=0.374  Sum_probs=42.6

Q ss_pred             CCCcEEEEEEeecCC----------CCeeEEeeC--CEEc----CCCCeeEec-e---EEec----ccceeEEEEEcccc
Q psy15667         16 PGPAVSLKCIASGNP----------TPDIGWTLD--GFEL----PTNNRFVIG-Q---FVSG----HGDVISHVNISHVT   71 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p----------~p~v~W~~~--~~~l----~~~~~~~~~-~---~~~~----~~~~~~~l~I~~~~   71 (286)
                      .|++++|.|....++          ...|.|+|.  +..+    ..+...... +   +...    ......+|+|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999887654          367999985  2211    011111000 0   0010    01122469999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy15667         72 VEDGGEYACVAENR   85 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~   85 (286)
                      .+|+|.|.|.+...
T Consensus        81 ~sD~G~Y~C~v~~~   94 (110)
T cd05878          81 SSDSGVYRCEVMHG   94 (110)
T ss_pred             hhhCEEEEEEEEeC
Confidence            99999999998754

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=97.94  E-value=3.8e-05  Score=54.46  Aligned_cols=70  Identities=24%  Similarity=0.360  Sum_probs=41.3

Q ss_pred             CCCcEEEEEEeecCC-------CCeeEEeeCC-----EE----cCCCCeeEece----EEeccc----ceeEEEEEcccc
Q psy15667         16 PGPAVSLKCIASGNP-------TPDIGWTLDG-----FE----LPTNNRFVIGQ----FVSGHG----DVISHVNISHVT   71 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p-------~p~v~W~~~~-----~~----l~~~~~~~~~~----~~~~~~----~~~~~l~I~~~~   71 (286)
                      .|++++|.|.-.-.|       .+.+.|.|..     ..    +..+.......    +.....    ....+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            378999999855333       3689999741     11    11111111000    000000    112469999999


Q ss_pred             cCCCeEEEEEEEcC
Q psy15667         72 VEDGGEYACVAENR   85 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~   85 (286)
                      .+|+|.|.|.....
T Consensus        81 ~~D~G~Y~C~v~~g   94 (110)
T cd05902          81 YSDSGTYRCEVVLG   94 (110)
T ss_pred             HHHCEEEEEEEEEC
Confidence            99999999998763

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd00096 Ig Immunoglobulin domain

Probab=97.93  E-value=6.8e-05  Score=47.61  Aligned_cols=64  Identities=44%  Similarity=0.685  Sum_probs=41.3

Q ss_pred             EEEEeeecCCCCCeEEEEeCCeeCCCCCCc---eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPV---NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       212 ~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~---~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .|.|.+.. .+...+.|++++.........   ...........|.|.+++.+|.|.|.|.+.+..+.
T Consensus         2 ~l~C~~~~-~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~~~   68 (74)
T cd00096           2 TLTCLASG-PPPPTITWLKNGKPLPSSVLTRVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSAGT   68 (74)
T ss_pred             EEEEEecC-CCCCcEEEEECCEECCCcccEEeccccCcceeEEEEEECccCcccCcEEEEEEecCcCc
Confidence            45666553 566778888877655332110   00011123567899999999999999999987643

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=97.90  E-value=7.9e-05  Score=53.13  Aligned_cols=24  Identities=21%  Similarity=0.458  Sum_probs=20.8

Q ss_pred             EEEEEcccccCCCeEEEEEEEcCC
Q psy15667         63 SHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+|.|.+++.+|+|.|.|+.....
T Consensus        79 asL~i~~v~~sD~G~Y~C~V~~g~  102 (117)
T cd05901          79 ASLTIVKLRASDAGVYRCEVMHGI  102 (117)
T ss_pred             eEEEEcccccccCEEEEEEEEECC
Confidence            469999999999999999987643

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=97.87  E-value=0.00011  Score=52.06  Aligned_cols=23  Identities=35%  Similarity=0.561  Sum_probs=20.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...|.|.+++.+|+|.|.|...+
T Consensus        71 ~~~L~I~~~~~~Dsg~YyCa~~~   93 (107)
T cd07700          71 RYRLHINRVKPEDSGTYFCMTVG   93 (107)
T ss_pred             EEEEEECCCCHHHCEEEEEeEcC
Confidence            45799999999999999999764

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.87  E-value=8.3e-05  Score=53.56  Aligned_cols=74  Identities=22%  Similarity=0.358  Sum_probs=47.1

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--E-E--c---CC-----------CCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--F-E--L---PT-----------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~-~--l---~~-----------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+....+.+|++|+|.|...+.-  ...+.|+|..  + +  |   ..           ..|+.....   .......|.
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~   79 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRD---TSKSTVYLQ   79 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEE---ccCCEEEEE
Confidence            45567889999999999876432  3458899742  2 1  1   00           123322110   111223599


Q ss_pred             EcccccCCCeEEEEEEEc
Q psy15667         67 ISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n   84 (286)
                      |.++..+|+|.|.|.+..
T Consensus        80 I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          80 LNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             ECCCCHHHCEEEEEEEEc
Confidence            999999999999997654

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.86  E-value=8.8e-05  Score=53.64  Aligned_cols=74  Identities=22%  Similarity=0.192  Sum_probs=46.3

Q ss_pred             ccccccccCCCcEEEEEEeecCC------CCeeEEeeCCEE------c--CC---------CCeeEeceEEecccceeEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP------TPDIGWTLDGFE------L--PT---------NNRFVIGQFVSGHGDVISH   64 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p------~p~v~W~~~~~~------l--~~---------~~~~~~~~~~~~~~~~~~~   64 (286)
                      .+.++.+.+|++|+|.|.-...+      ...+.|++....      +  ..         .+|+..   .........+
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~---~~~~~~~~~s   81 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRL---LGDLGKKNCS   81 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEE---ecCCCCCEEE
Confidence            45667899999999999754221      245889985311      0  00         012211   0001122346


Q ss_pred             EEEcccccCCCeEEEEEEEc
Q psy15667         65 VNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      |.|.+++.+|+|.|.|....
T Consensus        82 L~I~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          82 LLISDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             EEEccCChhhCeEEEEEEEc
Confidence            99999999999999998765

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=97.86  E-value=5e-05  Score=52.43  Aligned_cols=68  Identities=16%  Similarity=0.173  Sum_probs=38.8

Q ss_pred             CcEEEEEEeec-CCCCeeEEeeCCE----EcC-----CCCeeEe--ceEEeccc--ceeEEEEEcccccCCCeEEEEEEE
Q psy15667         18 PAVSLKCIASG-NPTPDIGWTLDGF----ELP-----TNNRFVI--GQFVSGHG--DVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        18 ~~~~l~C~~~g-~p~p~v~W~~~~~----~l~-----~~~~~~~--~~~~~~~~--~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      ++++|.|.... ....+|+|.|...    .+.     .+..+..  ..++...+  ..-.+|.|.+++.+|+|.|+|...
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            57899998653 3456889998432    110     0111100  00000010  011358999999999999999876


Q ss_pred             cC
Q psy15667         84 NR   85 (286)
Q Consensus        84 n~   85 (286)
                      +-
T Consensus        81 t~   82 (96)
T cd05889          81 TY   82 (96)
T ss_pred             eC
Confidence            53

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.86  E-value=8.2e-05  Score=52.10  Aligned_cols=79  Identities=15%  Similarity=0.308  Sum_probs=45.3

Q ss_pred             eccccccccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEec--ccc--eeEEEEEcccccCCCeEEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSG--HGD--VISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~--~~~--~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +.+....+..|+.++|.|.+.|..++  .++|++||+++..............  ++.  ....|.|..-...+...|+|
T Consensus         6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC   85 (102)
T cd05768           6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTC   85 (102)
T ss_pred             eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEE
Confidence            34444456678999999999995333  5799999998754321110000000  121  12335554443345568999


Q ss_pred             EEEcC
Q psy15667         81 VAENR   85 (286)
Q Consensus        81 ~a~n~   85 (286)
                      .+.-.
T Consensus        86 ~V~H~   90 (102)
T cd05768          86 VVGHE   90 (102)
T ss_pred             EeEeC
Confidence            88654

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=97.81  E-value=8.3e-05  Score=49.57  Aligned_cols=62  Identities=18%  Similarity=0.365  Sum_probs=43.1

Q ss_pred             ccccCCCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         12 QTLQPGPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      -.+..|++++|+|+....+.  +.|.|..-+...-.     +    ..++.  .+|.+.++...|+|.++|.+.-
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~-----~----~~~~~--ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQ-----I----LNQDK--KTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccce-----e----ccCCc--cEEEeceeCcccCCEEEEEEEE
Confidence            36789999999999876444  49999753322110     0    00111  2588999999999999999864

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=97.80  E-value=0.00064  Score=49.09  Aligned_cols=25  Identities=20%  Similarity=0.174  Sum_probs=21.3

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ....|.|.+++.+|+|.|.|.....
T Consensus        78 ~~~sL~I~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          78 KNCSLLISDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             CEEEEEEccCChhhCeEEEEEEEcC
Confidence            3568999999999999999987553

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=97.77  E-value=0.00022  Score=50.15  Aligned_cols=24  Identities=21%  Similarity=0.439  Sum_probs=20.7

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ....|.|.+++.+|+|.|.|...+
T Consensus        67 ~~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          67 NSFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             CEEEEEECCCCHHHCEEEEEEEcc
Confidence            345799999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.75  E-value=0.00029  Score=46.29  Aligned_cols=65  Identities=25%  Similarity=0.481  Sum_probs=40.4

Q ss_pred             cEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEe-cccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         19 AVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVS-GHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        19 ~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~-~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .++|.|.+.|. |+ ..++|+|||+++..+..  ...... ..+.  ..+.|.|.....++...|+|.+...
T Consensus         1 ~~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~--~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        1 KATLVCLVSGFYPPDITVTWLRNGQEVTSGVS--TTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             CeEEEEEEEeEeCCCCEEEEEECCEECCCCEE--ECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEc
Confidence            36899999985 55 58999999987543321  111111 1221  1234666665667778999998754

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=97.73  E-value=0.00017  Score=50.41  Aligned_cols=22  Identities=18%  Similarity=0.418  Sum_probs=20.1

Q ss_pred             EEEEEcccccCCCeEEEEEEEc
Q psy15667         63 SHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+|+|.+++.+|+|.|.|.+.+
T Consensus        64 ~sL~I~nv~~sD~GtY~C~v~~   85 (100)
T cd05888          64 GALILRNAVQADEGKYKCRVIT   85 (100)
T ss_pred             eEEEEecCccccceEEEEEEEe
Confidence            3599999999999999999876

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=97.70  E-value=0.00013  Score=50.30  Aligned_cols=63  Identities=22%  Similarity=0.284  Sum_probs=38.2

Q ss_pred             CcEEEEEEeecC-CCCeeEEeeCC----EEcC-----CC--------CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667         18 PAVSLKCIASGN-PTPDIGWTLDG----FELP-----TN--------NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus        18 ~~~~l~C~~~g~-p~p~v~W~~~~----~~l~-----~~--------~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ++++|.|.-... ...+|+|.|..    ..+.     .+        +|.....  ....  -.+|.|.+++.+|+|.|.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~--~~~~--d~sl~i~nv~~~D~G~Y~   76 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKN--YSLL--DATIMLENVGFSDIGVYI   76 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcC--CCCC--ccEEEEeCCCccccEEEE
Confidence            478999987643 34589998842    1110     01        1211100  0011  235899999999999999


Q ss_pred             EEEEc
Q psy15667         80 CVAEN   84 (286)
Q Consensus        80 C~a~n   84 (286)
                      |++.+
T Consensus        77 C~v~t   81 (96)
T cd05887          77 CKAVT   81 (96)
T ss_pred             EEEEe
Confidence            99754

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.66  E-value=0.00027  Score=44.25  Aligned_cols=58  Identities=22%  Similarity=0.340  Sum_probs=35.1

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |..+.|+|...    ...+.|.+++..+...           ...+.+.+-. +++|.|.|.+.+..    +.+.|..
T Consensus         7 GTtVtlTCP~~----~~~i~W~~n~~~~~g~-----------~~~~~~~~~~-e~~G~Y~C~~~~~~----~~lYLKa   64 (65)
T cd07692           7 GTTVTVTCPLS----GDDIKWKKNDQVSQGS-----------DEKYLSLNHF-SSSGYYHCTADNAN----HTLYLKA   64 (65)
T ss_pred             ccEEEEECCCC----CCCceEEeCCccCCCC-----------CceEEeeccC-CCCceEEEEeCCCc----EEEEEEc
Confidence            45566666321    2238999998655431           1234455555 89999999997443    5555543

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.60  E-value=0.00087  Score=47.64  Aligned_cols=71  Identities=25%  Similarity=0.453  Sum_probs=43.0

Q ss_pred             cccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCe-EEEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGG-EYACVAEN   84 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G-~Y~C~a~n   84 (286)
                      ...+..|+.++|.|.+.|. |. ..++|++||+.+.....-.   ...++++.   .+.|.+.. ...|.| .|+|.+..
T Consensus        15 ~~~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~---~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H   90 (111)
T cd05772          15 SGRANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNI---TPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQH   90 (111)
T ss_pred             hhccCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccce---eeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEe
Confidence            4456678999999999984 54 5899999999985421110   00111111   22354443 334444 69998876


Q ss_pred             C
Q psy15667         85 R   85 (286)
Q Consensus        85 ~   85 (286)
                      .
T Consensus        91 ~   91 (111)
T cd05772          91 R   91 (111)
T ss_pred             C
Confidence            4

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.60  E-value=0.0004  Score=47.26  Aligned_cols=69  Identities=29%  Similarity=0.507  Sum_probs=44.2

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      |+.+.+.|.+..+.|++.++|+.++..+.......... ...   ....|.+..-...+...++|.|.|..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            56788888888888999999999887662111001011 111   1345666655566789999999998644

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.59  E-value=0.00015  Score=45.44  Aligned_cols=52  Identities=25%  Similarity=0.409  Sum_probs=35.0

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..|.+|+|+|-..+   ..+.|.+|+..+..+...               +.+.+-. +++|.|+|.+.+.
T Consensus         5 isGTtVtlTCP~~~---~~i~W~~n~~~~~g~~~~---------------~~~~~~~-e~~G~Y~C~~~~~   56 (65)
T cd07692           5 ISGTTVTVTCPLSG---DDIKWKKNDQVSQGSDEK---------------YLSLNHF-SSSGYYHCTADNA   56 (65)
T ss_pred             EeccEEEEECCCCC---CCceEEeCCccCCCCCce---------------EEeeccC-CCCceEEEEeCCC
Confidence            46899999994332   239999998666542221               2233444 8899999999764

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.58  E-value=0.00085  Score=46.15  Aligned_cols=79  Identities=18%  Similarity=0.311  Sum_probs=46.4

Q ss_pred             eccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +.+........+.++|.|.+.|. |. -.|+|.+||..+...... . ......++.   ...|.|..-...+...|+|.
T Consensus         4 ~~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~-s-~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~   81 (94)
T cd05847           4 LHSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAAS-T-APQKEEGSTFSTTSELNVTQEDWKSGKTYTCK   81 (94)
T ss_pred             ECcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceee-c-ccEECCCCcEEEEEEEEEchHHhcCCCeEEEE
Confidence            33444444456779999999994 44 578999999987432110 0 001112222   23355554444466799999


Q ss_pred             EEcCCE
Q psy15667         82 AENRAG   87 (286)
Q Consensus        82 a~n~~g   87 (286)
                      +.....
T Consensus        82 V~H~~~   87 (94)
T cd05847          82 VTHQGT   87 (94)
T ss_pred             EEECCe
Confidence            987543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=97.58  E-value=0.0015  Score=47.02  Aligned_cols=22  Identities=23%  Similarity=0.462  Sum_probs=19.7

Q ss_pred             eeEEEcccCCCCCeEEEEEEEe
Q psy15667        251 SLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..|.|.++..+|+|.|.|.+..
T Consensus        76 ~~L~I~~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          76 VYLQLNSLTPEDTAVYYCARGL   97 (117)
T ss_pred             EEEEECCCCHHHCEEEEEEEEc
Confidence            4699999999999999998764

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>KOG1480|consensus

Probab=97.56  E-value=5.2e-05  Score=69.01  Aligned_cols=68  Identities=29%  Similarity=0.522  Sum_probs=52.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      |.++....+.|....+.|...++|+|++..+.+...+....    ...|+|..+...|+|+|+|+|.|-++.
T Consensus       141 V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~----d~~li~~~arlsd~~nytc~a~ni~~~  208 (909)
T KOG1480|consen  141 VQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS----DHNLIISQARLSDSGNYTCEATNIVAK  208 (909)
T ss_pred             ecccccccccccCcccchhhhhhccccCCCCCccccchhhh----cCCccccchhhhhcccceeeeehhhcc
Confidence            44556667777777788889999999999887754443322    235789999999999999999998764

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.54  E-value=0.0016  Score=46.25  Aligned_cols=70  Identities=23%  Similarity=0.423  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeeecCC----CeeeEEEcccCCCCCe-EEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSG-EYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G-~Y~C~a~N~~g  275 (286)
                      +..|+.+.|.|.+....|. ..++|+|||+.+...........+.    ....|.+.. ...|.| .|+|.+.....
T Consensus        18 ~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~~~~~~~~~~p~~d~~ty~~~S~L~~~~-~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          18 ANPGQSVNFTCSAHGFSPRDITVKWLKNGNELSAEQPNITPEGDSVSYNVTSTVQVKL-TEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             cCCCCCEEEEEEEeeEeCCCCEEEEEECCEECcccccceeeCCCCCcEEEEEEEEEEC-ccccccCceEEEEEeCCC
Confidence            3456667888877766665 6899999999875432111111111    133454443 344544 49999988653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=97.54  E-value=0.0014  Score=45.22  Aligned_cols=38  Identities=11%  Similarity=0.122  Sum_probs=28.2

Q ss_pred             ccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPT   45 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~   45 (286)
                      .+....+..++.++|.|.+.|- |. -.|+|.+||..+..
T Consensus         7 ~ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697           7 SPSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             CCCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            3433466667889999999994 43 36799999998754

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.53  E-value=0.00087  Score=46.31  Aligned_cols=75  Identities=19%  Similarity=0.262  Sum_probs=41.3

Q ss_pred             cccccccCCCcEEEEEEeecC--CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN--PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~--p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +....+..|+.++|.|.+.|.  |. -.|+|.||++..... ... ......++.  ....|.+..-...+.-.|+|.+.
T Consensus         6 Ps~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~-~~~-~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~   83 (96)
T cd07696           6 PSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKA-SIQ-PPESHNNATLSVTSTLNVSTDDWISGDTFQCKVT   83 (96)
T ss_pred             cCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeE-Eec-ccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEE
Confidence            334456778999999999998  43 367999997533110 000 000011111  11234444433334458999987


Q ss_pred             cC
Q psy15667         84 NR   85 (286)
Q Consensus        84 n~   85 (286)
                      -.
T Consensus        84 H~   85 (96)
T cd07696          84 HP   85 (96)
T ss_pred             CC
Confidence            64

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.50  E-value=0.0012  Score=45.55  Aligned_cols=74  Identities=26%  Similarity=0.393  Sum_probs=46.2

Q ss_pred             CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecc--cceeeEEE
Q psy15667        209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTA--AQARYSSK  282 (286)
Q Consensus       209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~~~~~~~  282 (286)
                      ....+.|.+..|.|++.|+|+++..   ......... .++   ....|.+......|.-.|+|.+.|..  .....+..
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~---~~~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~~~~~   92 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLG---GEAETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQRFSVT   92 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCC---CcceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEE
Confidence            4577899998999999999999721   110000000 011   13456666666677889999999986  44445554


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        93 L~V   95 (95)
T cd05719          93 LNV   95 (95)
T ss_pred             eeC
Confidence            543

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00406 IGv Immunoglobulin V-Type

Probab=97.49  E-value=0.00032  Score=46.49  Aligned_cols=60  Identities=30%  Similarity=0.472  Sum_probs=37.2

Q ss_pred             cEEEEEEeecCCCC--eeEEeeCCE--E---cC-------------CCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667         19 AVSLKCIASGNPTP--DIGWTLDGF--E---LP-------------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus        19 ~~~l~C~~~g~p~p--~v~W~~~~~--~---l~-------------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +++|.|.......+  .+.|++...  .   +.             ...|+....   .......+|.|.+++.+|+|.|
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L~i~~~~~~D~G~Y   77 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISK---DTSKNDVSLTISNLRVEDTGTY   77 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEe---cCcCCEEEEEEcCCCHHHCEEE
Confidence            47899988865543  789987431  1   10             012332211   0012234699999999999999


Q ss_pred             EEE
Q psy15667         79 ACV   81 (286)
Q Consensus        79 ~C~   81 (286)
                      .|.
T Consensus        78 ~C~   80 (81)
T smart00406       78 YCA   80 (81)
T ss_pred             EEc
Confidence            996

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.49  E-value=0.00095  Score=45.93  Aligned_cols=72  Identities=19%  Similarity=0.253  Sum_probs=44.9

Q ss_pred             eEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecc--cceeeEEEE
Q psy15667        210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTA--AQARYSSKL  283 (286)
Q Consensus       210 ~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~~~~~~~L  283 (286)
                      ...+.|.+..|.|++.|+|+++..-.   ....... .++   ....|.+..-...|.-.|+|.+.|..  ......+.|
T Consensus        17 ~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~~l   93 (95)
T cd07703          17 VPVAKCVSANGRPPARISWSSTLGGN---ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPVTL   93 (95)
T ss_pred             cEEEEEEcCCCCCCcEEEEEcCCCCC---eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEEEE
Confidence            46788988889999999999982211   0000000 111   13456666666677889999999987  344444444


Q ss_pred             E
Q psy15667        284 Q  284 (286)
Q Consensus       284 ~  284 (286)
                      .
T Consensus        94 ~   94 (95)
T cd07703          94 S   94 (95)
T ss_pred             e
Confidence            3

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.45  E-value=0.00084  Score=46.27  Aligned_cols=74  Identities=20%  Similarity=0.355  Sum_probs=42.6

Q ss_pred             ccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ...+..........+.|.+. |.|.++|+|+++   +.......  +....++.  ..+.|.+.-...+|...|+|++.+
T Consensus         6 ~~~~~~~~~~~~~va~C~s~~gkP~a~ItW~~~---~~~~~~~~--~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h   80 (95)
T cd05719           6 EAGPVALGGEPVTVATCVSANGKPPATISWETT---LGGEAETQ--SKENPNGTVTVTSEYRLVPSREANGKELTCVVSH   80 (95)
T ss_pred             ceeccccCCCccEEEEEECCCCcCCCEEEEEeC---CCCcceeE--eecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeC
Confidence            34444556667789999884 799999999987   21111110  11111221  123455543444444599999988


Q ss_pred             CC
Q psy15667         85 RA   86 (286)
Q Consensus        85 ~~   86 (286)
                      ..
T Consensus        81 ~~   82 (95)
T cd05719          81 PT   82 (95)
T ss_pred             cc
Confidence            54

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>smart00406 IGv Immunoglobulin V-Type

Probab=97.41  E-value=0.00095  Score=44.17  Aligned_cols=21  Identities=24%  Similarity=0.528  Sum_probs=18.7

Q ss_pred             CeeeEEEcccCCCCCeEEEEE
Q psy15667        249 FSSLLSINSVSAAHSGEYTCV  269 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~  269 (286)
                      ....|.|.+++.+|+|.|.|.
T Consensus        60 ~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406       60 NDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEcCCCHHHCEEEEEc
Confidence            356799999999999999995

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.34  E-value=0.0013  Score=43.19  Aligned_cols=64  Identities=23%  Similarity=0.527  Sum_probs=37.1

Q ss_pred             EEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        211 TRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       211 ~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +.|.|.+....|+ ..+.|+|+|+.+.... ...... .+   .....|.|......+...|+|.+....
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            3455655544444 5789999998643321 110111 11   123456666666778899999997654

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.33  E-value=0.0007  Score=42.74  Aligned_cols=49  Identities=27%  Similarity=0.478  Sum_probs=35.5

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .+.+.|.|.+     ..+|.|++ |..+....          +.+|-+.++..+-.|.|.|.+.|
T Consensus         6 ~~~V~L~C~~-----~tsi~W~k-G~~~~~~~----------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNG-----ATNITWKK-GKEILEVS----------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecC-----CCcEEEec-Cccccccc----------ccEEeccCcccCCCcceEecCcc
Confidence            4578888964     25699999 55443221          34677888888889999999987

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.33  E-value=0.0018  Score=43.37  Aligned_cols=65  Identities=23%  Similarity=0.480  Sum_probs=41.1

Q ss_pred             CCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEeccccee---EEEEEcccccCCCeEEEEEEEcC
Q psy15667         16 PGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVI---SHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        16 ~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .++.++|.|.+.+. |.. .|.|++||..+........ . ....++..   ..|.|.   ..+...|+|.+...
T Consensus         7 ~~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~-~-~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~   76 (83)
T PF07654_consen    7 LGGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTP-P-PPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHE   76 (83)
T ss_dssp             STSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEE-E-EEETTSEEEEEEEEEEE---TTTTGGEEEEEEET
T ss_pred             CCCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecc-c-ccccccceeeeEEEEec---CCCCCEEEEEEEEC
Confidence            48999999999984 544 7999999998865432211 1 11122222   234444   55666899998754

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.32  E-value=0.0025  Score=43.90  Aligned_cols=77  Identities=16%  Similarity=0.265  Sum_probs=41.5

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~Y~   79 (286)
                      |-+.+-+... .++.++|.|.+.|. |. -.|+|.+||+. ..+...  ......+++.   ...|.|..-.......|+
T Consensus         5 ~~l~~~~~~~-~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~--~~~~~~~dgty~~~s~L~v~~~~w~~~~~yt   80 (95)
T cd04985           5 FPLVPCCSSS-SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKT--YPAVLQSGGLYTASSQLTVPASEWKGKESFY   80 (95)
T ss_pred             EEeCCCcccc-CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEE--CCCEeCCCCCEEEEEEEEEeHHHcCCCCcEE
Confidence            3334433333 56779999999995 43 47789999997 322110  0001111222   122444433322355899


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |++.-.
T Consensus        81 C~V~H~   86 (95)
T cd04985          81 CKVEHP   86 (95)
T ss_pred             EEEEeC
Confidence            998764

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03376 BARF1; Provisional

Probab=97.21  E-value=0.0043  Score=47.51  Aligned_cols=35  Identities=17%  Similarity=0.354  Sum_probs=25.8

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      ++-+|.|.+++.+|.|.|+|.-.-.-..+...-+|
T Consensus        85 gnvsLvI~~l~lSDdGtY~C~fQkge~~~~k~ehL  119 (221)
T PHA03376         85 NTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHL  119 (221)
T ss_pred             CeEEEEEEeeeecCCceEEEEEEcCCCceeeeeee
Confidence            46689999999999999999877644433333333

>KOG1480|consensus

Probab=97.19  E-value=0.00014  Score=66.28  Aligned_cols=74  Identities=22%  Similarity=0.466  Sum_probs=57.2

Q ss_pred             eccccccccCCCcEEEEEE-eecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          7 YSFIEQTLQPGPAVSLKCI-ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..+--+.|..+..++|.|. ..+.|+..+.|++++..+..+......+    .    ..+.|..+...|+|.|+|+|.|.
T Consensus       134 ~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e~~~~pd~n~~~~~----d----~~li~~~arlsd~~nytc~a~ni  205 (909)
T KOG1480|consen  134 QSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNEVVIDPDANVIRAS----D----HNLIISQARLSDSGNYTCEATNI  205 (909)
T ss_pred             cChhhheecccccccccccCcccchhhhhhccccCCCCCccccchhhh----c----CCccccchhhhhcccceeeeehh
Confidence            3344467888999999996 5588999999999998887755543221    1    13779999999999999999997


Q ss_pred             CEE
Q psy15667         86 AGT   88 (286)
Q Consensus        86 ~g~   88 (286)
                      .+.
T Consensus       206 ~~~  208 (909)
T KOG1480|consen  206 VAK  208 (909)
T ss_pred             hcc
Confidence            664

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.17  E-value=0.0036  Score=42.93  Aligned_cols=68  Identities=18%  Similarity=0.321  Sum_probs=34.2

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeeec-CCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ++.+.|.|.+.+-.|. ..++|.|+|..+.... .-..... +..-.....-.+...|...|+|.+.+..-
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPEDKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCCCCCEEEEEEEeCCC
Confidence            3445555555433333 4788888886332211 0011111 11001112334555689999999987654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.15  E-value=0.0025  Score=43.88  Aligned_cols=69  Identities=22%  Similarity=0.367  Sum_probs=39.7

Q ss_pred             cccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         13 TLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      ....-..+.++|.+. |.|.++|+|+++....   ....  +....++.  ..+.|.+.--..+|...|+|++.+..
T Consensus        11 ~~~~~~~~va~C~s~~gkPaa~IsW~~~~~g~---~~~~--~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~a   82 (95)
T cd07703          11 SAGTIPVPVAKCVSANGRPPARISWSSTLGGN---ANTT--SKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHET   82 (95)
T ss_pred             ecCCCccEEEEEEcCCCCCCcEEEEEcCCCCC---eeEE--EEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcc
Confidence            334456789999766 7899999999882111   1111  11111222  12345554444444459999999854

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA02633 hypothetical protein; Provisional

Probab=97.14  E-value=0.0011  Score=40.83  Aligned_cols=36  Identities=19%  Similarity=0.305  Sum_probs=29.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|-++..+|+|.|.|..+|.---...++.|+|
T Consensus        17 ~~nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V   52 (63)
T PHA02633         17 CNNMLILNPTQSDSGIYMCITKNETYSDMMKFDLCI   52 (63)
T ss_pred             cccEEEeccccccCcEEEEEEcCCCeeEEEEEEEEE
Confidence            346889999999999999999988766666666665

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.12  E-value=0.00091  Score=42.24  Aligned_cols=51  Identities=22%  Similarity=0.440  Sum_probs=36.6

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ...+.|.|+|.+.    ..|.|++ |..+....              ...|.+.+...+-.|.|.|.+.+
T Consensus         4 e~~~~V~L~C~~~----tsi~W~k-G~~~~~~~--------------~~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           4 ESEGKVFLKCNGA----TNITWKK-GKEILEVS--------------NTLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             ecCceEEEEecCC----CcEEEec-Cccccccc--------------ccEEeccCcccCCCcceEecCcc
Confidence            3456799999663    4599999 55543211              12477888899999999999877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.12  E-value=0.0014  Score=45.77  Aligned_cols=70  Identities=21%  Similarity=0.395  Sum_probs=41.1

Q ss_pred             CCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC--ceeee-cC--CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        205 LPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP--VNVSD-LD--SFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~--~~~~~-~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +..++.+.|.|.+..-.| ...++|+|||+.+.....  ..... ..  .....|.+..-...+...|+|.+....
T Consensus        14 ~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~H~~   89 (100)
T cd07699          14 LEKSGKATLVCLINDFYPGFATVQWKVDGATVSSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVTHEG   89 (100)
T ss_pred             HccCCCcEEEEEEEeEECCCCEEEEEECCEECcccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEEecC
Confidence            334566777777765445 578999999998743211  00001 11  113345554444446889999998764

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=97.09  E-value=0.0015  Score=45.36  Aligned_cols=37  Identities=19%  Similarity=0.460  Sum_probs=29.6

Q ss_pred             CcceEEEccCCCCCCeeEEEEEEc-CCcceeeeeeEEEE
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARR-SDGDVAQGSAELQL  152 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~-~~g~~~~~~~~l~v  152 (286)
                      ...+|.|.++..+|+|.|+|...+ +.|. .+..+.|.|
T Consensus        61 ~daSi~i~nl~~~D~G~Y~C~v~t~P~g~-~~~~~~L~V   98 (99)
T cd05886          61 EDGTISLSRLELEDEGVYICEFATFPTGN-RESQLNLTV   98 (99)
T ss_pred             CcceEEEcCCccccCEEEEEEEEeCCCCC-eEEEEEEEE
Confidence            457899999999999999999998 5664 345566665

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.06  E-value=0.012  Score=40.43  Aligned_cols=68  Identities=22%  Similarity=0.489  Sum_probs=40.4

Q ss_pred             CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-Cceeeec-C-CC--eeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-PVNVSDL-D-SF--SSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~~~~~~~-~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ..|+...|.|.+.+-.|. ..++|+|||+.+.... ....... + ..  ...|   .+...+...|+|.+.-....
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L---~~~~~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVML---ETTPSRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEE---EEcCCCCCEEEEEEEeCCCC
Confidence            456777888877665554 4789999999875531 1111111 1 11  2233   34456788999999876543

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=96.86  E-value=0.0095  Score=42.16  Aligned_cols=73  Identities=14%  Similarity=0.115  Sum_probs=46.8

Q ss_pred             ccccccccCCCcEEEEEEeecCC--C-CeeEEeeC--CEEc-------------C-CCCeeEeceEEecccceeEEEEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--T-PDIGWTLD--GFEL-------------P-TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~-p~v~W~~~--~~~l-------------~-~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      .....++.+|+.+.|.|.+.|.-  . -.+.|.|.  + .+             . ...++.++.  . .......|.|.
T Consensus         4 ~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~lE~c~~~~~~g~~~~~~~~r~tcs~--~-~s~ntv~L~l~   79 (115)
T cd05721           4 QQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-AVEVCAVTGNMSNQLQTSLDGFNCDG--T-LGNEQVNFTLQ   79 (115)
T ss_pred             ecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-CcEEEEEEeCCCccccccCCCeEEeE--e-CCCCEEEEEEc
Confidence            34456788999999999997643  3 35778873  3 21             0 122332221  1 11223469999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      +++.+|++.|.|..+.
T Consensus        80 ~L~a~DTa~Y~Ca~e~   95 (115)
T cd05721          80 NLRANQTDIYFCKIEL   95 (115)
T ss_pred             CCCHHHCeEEEEEeee
Confidence            9999999999996643

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.77  E-value=0.023  Score=38.96  Aligned_cols=62  Identities=21%  Similarity=0.293  Sum_probs=31.6

Q ss_pred             EEEEEeeecCC-CCCeEEEEeCCeeCCCCCCceeeecCCCeeeEE---EcccCCCCCeEEEEEEEecc
Q psy15667        211 TRVICGVTHGD-PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS---INSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       211 ~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~---i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..|.|.+..-. +...++|+|||..+.......+....  ..+..   --.+.+.+.-.|+|.+.-..
T Consensus        18 ~~L~C~a~gFyP~~i~v~W~~dg~~~~~~~~~~~~p~~--d~tyq~~s~l~~~~~~~~~ysC~V~H~~   83 (93)
T cd05770          18 NVLNCYVTGFHPPDIEIRLLKNGVKIPKVEQSDLSFSK--DWTFYLLKSTEFTPTKGDEYACRVRHNS   83 (93)
T ss_pred             eEEEEEEEEEeCCCCEEEEEECCEECCCcEECcEEECC--CCCEEEEEEEEECCCCCCeEEEEEEECC
Confidence            34444443322 33567899999877511111111111  11222   12345778899999987643

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.74  E-value=0.009  Score=41.13  Aligned_cols=68  Identities=21%  Similarity=0.376  Sum_probs=41.3

Q ss_pred             cccCCCcEEE-EEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         13 TLQPGPAVSL-KCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        13 ~~~~G~~~~l-~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+.+|+.+.+ .|.+. |.|+++|+|+.+..... +  ...  ....++.  ..+.+.+.--..+|.-.++|.+...
T Consensus        12 ~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~-~--~~~--~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~   83 (97)
T cd07704          12 LIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS-E--SHS--QEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHP   83 (97)
T ss_pred             EeecCcceeEEEEEccCCccCCEeEEeCCCCCcc-c--eee--ecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCc
Confidence            5689999999 99755 78999999998743321 1  100  0111222  2233555444444555999998764

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.68  E-value=0.0064  Score=42.51  Aligned_cols=69  Identities=23%  Similarity=0.405  Sum_probs=38.7

Q ss_pred             CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce--eeec----C--CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN--VSDL----D--SFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~--~~~~----~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..|..+.|.|.+.+-.|. ..++|+|+|+.+.......  ....    .  .....|.|..-...+...|+|.+.-..
T Consensus        14 ~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~ytC~V~H~~   91 (102)
T cd05768          14 SLQETATLTCLVKGFSPSDIFVKWLQNGQPLSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFTCVVGHEA   91 (102)
T ss_pred             CcCCceEEEEEEeeEeCCCCEEEEEECCEECCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEEEEeEeCC
Confidence            345667777777654443 5689999998875331111  0110    0  013345554333346678999987543

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=96.64  E-value=0.011  Score=40.53  Aligned_cols=69  Identities=17%  Similarity=0.336  Sum_probs=39.5

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCC-C--ceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF-P--VNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~-~--~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ++.+.|.|.+..-.|. ..++|+|||..+.... .  ......+  .....|.|..-...+...|+|.+......
T Consensus        14 ~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H~~~~   88 (94)
T cd05847          14 SETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTHQGTT   88 (94)
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEECCee
Confidence            4557777777654444 7889999998863321 0  0000111  11334545544344678999999876543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.62  E-value=0.016  Score=39.95  Aligned_cols=79  Identities=20%  Similarity=0.264  Sum_probs=47.7

Q ss_pred             CCCCCeEEE-EEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEeccc--ceee
Q psy15667        205 LPEGARTRV-ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAA--QARY  279 (286)
Q Consensus       205 ~~~g~~~~l-~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g--~~~~  279 (286)
                      +.+|+.+.+ .|.+..|.|++.|+|+.+..-.... .......+  .....|.+..-+..|.-.++|.+....-  ....
T Consensus        13 ~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~~~-~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~al~~~~~~   91 (97)
T cd07704          13 IDGGNGTTLAACCAAEGRPAADVTWETNVYGTSES-HSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPALQQDFRI   91 (97)
T ss_pred             eecCcceeEEEEEccCCccCCEeEEeCCCCCccce-eeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcccCCCcee
Confidence            456777777 8888889999999999874321110 00000000  1134566666667789999999988743  4444


Q ss_pred             EEEEE
Q psy15667        280 SSKLQ  284 (286)
Q Consensus       280 ~~~L~  284 (286)
                      +..|.
T Consensus        92 ~~~L~   96 (97)
T cd07704          92 THILN   96 (97)
T ss_pred             eEEee
Confidence            44443

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.59  E-value=0.053  Score=37.21  Aligned_cols=48  Identities=23%  Similarity=0.423  Sum_probs=25.4

Q ss_pred             CeEEEEeCCeeCCCCCC-ceeee--cCC--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        224 LTIRWLKDGKPLSPRFP-VNVSD--LDS--FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~-~~~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..++|.|||..+..+.. -....  +..  ....|.+   .+++...|+|.+.-..
T Consensus        32 I~v~W~~~g~~~~~~~~~~~~~~~~Dgty~~~s~L~v---~~~~~~~ytC~V~H~~   84 (94)
T cd05767          32 LNVTWLKNGVPVTDGVSETRYYPRQDLSFQKFSYLNF---TPEEGDIYSCIVEHWG   84 (94)
T ss_pred             CEEEEEECCeEccCceEEeeeEeCCCCcEEEEEEEEE---ECCCCCeEEEEEEeCC
Confidence            56778888877643210 00000  111  1223443   3567779999997653

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.58  E-value=0.014  Score=42.22  Aligned_cols=61  Identities=18%  Similarity=0.348  Sum_probs=36.8

Q ss_pred             CeEEEEeCCeeCCC--CC----------CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        224 LTIRWLKDGKPLSP--RF----------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       224 ~~~~W~~~g~~~~~--~~----------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..+.|..+|..+..  +.          +..+.....++..|.+...+.- .|+|+|.+.....+.+....|..
T Consensus        47 m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCeVt~~~~ege~~i~Lk~  119 (130)
T PF08204_consen   47 MYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCEVTELSREGETTIELKY  119 (130)
T ss_dssp             EEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEEEEecCCCceEEEEEEE
Confidence            45889988875521  10          0111111123345777775544 99999999998888888888875

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.55  E-value=0.021  Score=39.47  Aligned_cols=80  Identities=24%  Similarity=0.287  Sum_probs=43.8

Q ss_pred             CeeEec-cccccccCCCcEEEEEEeecC--CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667          3 PILTYS-FIEQTLQPGPAVSLKCIASGN--PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG   76 (286)
Q Consensus         3 p~~~~~-~~~~~~~~G~~~~l~C~~~g~--p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G   76 (286)
                      |.+..- +....+..++.++|.|.+.+.  |. -.|.|.+||+. .  .... ......++.  ..+.|.|..-...-..
T Consensus         4 PsV~l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~--~~~t-~~~~~~dgTys~~S~L~v~~~~W~~g~   79 (99)
T cd04986           4 PSLSLQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-E--AVQT-SAESDQCGCYSVSSVLPGCAEEWNKGE   79 (99)
T ss_pred             CEEEEECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCcc-C--cEEc-CcccCCCCCEEEEEEEEeCHHHhcCCC
Confidence            444433 333345578999999999984  42 47899999875 1  1110 000011111  1223555433333334


Q ss_pred             EEEEEEEcCC
Q psy15667         77 EYACVAENRA   86 (286)
Q Consensus        77 ~Y~C~a~n~~   86 (286)
                      .|+|.+....
T Consensus        80 ~ytC~V~H~~   89 (99)
T cd04986          80 PFACTVTHPE   89 (99)
T ss_pred             eEEEEEECCC
Confidence            7999987653

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=96.51  E-value=0.019  Score=41.06  Aligned_cols=72  Identities=17%  Similarity=0.336  Sum_probs=41.7

Q ss_pred             CCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee-cC-----CCeeeEEEcccCCCC-CeEEEEEEEecccce
Q psy15667        206 PEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD-LD-----SFSSLLSINSVSAAH-SGEYTCVASNTAAQA  277 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~-~~-----~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~  277 (286)
                      .+++.+.|.|.+..-.|. ..+.|+|||..+.......... ..     .....|.|..-+..| .-.|+|.+.-.....
T Consensus        16 ~~~~~~tL~Cla~gFyP~~I~V~W~kng~~l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~V~H~g~~~   95 (115)
T cd05769          16 RNKRKATLVCLATGFYPDHVSLSWKVNGKEVTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCIVQFYGGTD   95 (115)
T ss_pred             ccCCCcEEEEEEEeEeCCCcEEEEEECCEECCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEEEEEeCCcc
Confidence            345667888877655555 5889999998875432110001 11     113445555444333 679999887654433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.34  E-value=0.029  Score=37.45  Aligned_cols=65  Identities=25%  Similarity=0.481  Sum_probs=36.4

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee--cCC---CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD--LDS---FSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~--~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ++.+.|.|.+..-.|. ..+.|+++|..+..........  .++   ....|.+.   ..+...|+|.+.....
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l   78 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGKEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESL   78 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTEEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTS
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCC
Confidence            4555556655543333 4688999988775432211111  111   12344444   6677799999987654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.33  E-value=0.031  Score=38.52  Aligned_cols=71  Identities=14%  Similarity=0.218  Sum_probs=37.1

Q ss_pred             CCCCCeEEEEEeeecC--CCCCeEEEEeCCeeCCCC-CCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHG--DPPLTIRWLKDGKPLSPR-FPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~--~p~~~~~W~~~g~~~~~~-~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +..|+.+.|.|.+..-  ++...++|.|++...... ........+   .....|.+..-...+.-.|+|.+.-..-
T Consensus        11 l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V~H~~l   87 (96)
T cd07696          11 LLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKVTHPDL   87 (96)
T ss_pred             hccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEEECCCC
Confidence            4456777788877655  344678999987432110 000000000   1123344443333346689999986643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.32  E-value=0.034  Score=38.17  Aligned_cols=70  Identities=24%  Similarity=0.301  Sum_probs=43.8

Q ss_pred             CCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCCCce-ee--ecCCCeeeEEEcccCCCCCe-EEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVN-VS--DLDSFSSLLSINSVSAAHSG-EYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~~~~-~~--~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g  275 (286)
                      +.+|..+.+.|.+....|.  ..+.|+|+...+....-.. +.  ........+++.. ..+|.| .|+|.|.-.++
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCcceecccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            5688999999988766666  7799999776653221100 00  0001123455544 477766 99999987665

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PHA02982 hypothetical protein; Provisional

Probab=96.16  E-value=0.14  Score=39.94  Aligned_cols=72  Identities=13%  Similarity=0.204  Sum_probs=43.7

Q ss_pred             CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCC-EEEEeeEeeecCCeEEEEE
Q psy15667        114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEG-LSIKCPVAGYPIEEVHWEK  190 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~-~~l~c~~~~~p~~~v~w~~  190 (286)
                      ...++|+|.++..+..|.|+|+++...+......--|.|+.-. +.    ....++.+ ..+.|-+-....+-..|.-
T Consensus        97 g~~STLTIkk~~i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~~-V~----~~W~e~nNeT~V~CyVgS~~~dvp~W~V  169 (251)
T PHA02982         97 GNSSTFTMKKPDPQNLGCFTCEAKDAEGKEETCEKCLEIQKED-IL----YVVEEHNNETIITCFVGSKHGDVPRFIV  169 (251)
T ss_pred             ccceeEEeccCCcccCCceEEEEecCCCchheeheeeeEecce-EE----EEEEecCCeEEEEEEEEeccCCCccEEE
Confidence            3567899999999999999999998765544434444442111 10    11113333 4577887665444335654

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.00  E-value=0.051  Score=37.32  Aligned_cols=71  Identities=24%  Similarity=0.308  Sum_probs=40.3

Q ss_pred             cccCCCcEEEEEEeec-CCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEEEEEcC
Q psy15667         13 TLQPGPAVSLKCIASG-NPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYACVAENR   85 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g-~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~n~   85 (286)
                      .+.+|..++++|.+.+ .|.  ..|.|++....+.... +...............+++.- +.+|.| .|+|+|.-.
T Consensus        11 ~l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~~~l~~~~-f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~   85 (99)
T cd07689          11 PLEEGKPVTVKCEVPDVYPFDRLEIELLKGETLLPSKS-FLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLH   85 (99)
T ss_pred             cccCCceEEEEEEecCcccCCceEEEEecCcceecccc-cccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEe
Confidence            4589999999999985 454  5788987665554322 110000000001011233322 477887 999999764

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>KOG0613|consensus

Probab=95.98  E-value=0.023  Score=55.38  Aligned_cols=220  Identities=10%  Similarity=-0.007  Sum_probs=117.4

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEecCCC
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDS   96 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~~~   96 (286)
                      ++...+-=...|.|.+.+.|+.+|..+..++.+.+.....   +  ..+.|...-..+.|.|.-.+-|..+.-       
T Consensus       204 ~e~~v~~v~s~gqp~~~~~~~~~g~~i~~~~~~~~s~t~e---~--s~~~i~~~l~~~~G~~~~~~~~~l~e~-------  271 (1205)
T KOG0613|consen  204 YESRVRAVVSAGQPEPLERWEILGELIAPGSAPSMSVTLE---A--SDRKIQLTLRAPRGPYSAHILGYLIEQ-------  271 (1205)
T ss_pred             cceeEEEEEecCCCccchhhhhcccccCCCCccccccccc---h--hheeeeEEeecCCCchHHHHhcchhhh-------
Confidence            3444444445688999999999999887766654422111   1  124445555555555543222211111       


Q ss_pred             CCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEe
Q psy15667         97 GPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC  176 (286)
Q Consensus        97 ~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c  176 (286)
                                    ..........|.+-..++.+.|+|...+..+.... .+.-.+.............+.         
T Consensus       272 --------------~~~~~~~t~~i~~~~~~~~~s~t~~~~~~~~q~~~-~v~~~~~i~~~~~~p~~~~~a---------  327 (1205)
T KOG0613|consen  272 --------------RKHKGGNTKTIQNDGPEPELSWTVADKRQGCQDRF-KVTEEAPIGKGKPGPESLQAA---------  327 (1205)
T ss_pred             --------------cccCCCccccccccCCccccceeeecccCCcccce-eeeEEeeccccccCchhhhhh---------
Confidence                          00122345667777788889999999888776532 111111100000000000000         


Q ss_pred             eEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEE
Q psy15667        177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSI  255 (286)
Q Consensus       177 ~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i  255 (286)
                       + ..|+ .+       ............+.+..+.+.|......++-.+.|++++..........+.. .......+.|
T Consensus       328 -a-a~~~-~~-------~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~ts~~~~~  397 (1205)
T KOG0613|consen  328 -A-ARPP-EV-------PVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALPCPVGTVTSHTYTI  397 (1205)
T ss_pred             -c-cCCc-cc-------cccccccceeccccCcceeecccccCCcCCchheeecccccccccccccccccccccCcchhh
Confidence             0 0000 00       0000011123345667788888776444445589999887665443211111 1234567889


Q ss_pred             cccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        256 NSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       256 ~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+...+.+.|.|.|.|..|.......
T Consensus       398 ~~~~~~e~~~~~~~a~n~~g~~~~~~~  424 (1205)
T KOG0613|consen  398 KDAGPGEGYFTRVPAVNKGGTEQTIAE  424 (1205)
T ss_pred             hhcCcccccccccceeccCCcccccch
Confidence            999999999999999999997665443

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.95  E-value=0.011  Score=47.67  Aligned_cols=48  Identities=33%  Similarity=0.539  Sum_probs=35.9

Q ss_pred             CCeEEEEe-CCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        223 PLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       223 ~~~~~W~~-~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      -|.+.|.. +|+.+.....++++.    .+.|.+.+...+++|.|+|...-..
T Consensus        12 DP~y~W~GP~g~~l~gn~~~nIT~----TG~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   12 DPTYLWTGPNGKPLSGNSYVNITE----TGKLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCceEEECCCCcccCCCCeEEEcc----CceEEeeccccccCCceEEEEEEEe
Confidence            46788985 455666555666654    5679999999999999999866543

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.92  E-value=0.25  Score=42.93  Aligned_cols=65  Identities=20%  Similarity=0.346  Sum_probs=38.1

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeee
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY  181 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~  181 (286)
                      ...|.|..++...+|.|+=...+..+.. ......+.++..|.+.+.+ -.++.|++..-.|.+..+
T Consensus       181 ~~~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~Y~AtC~va~Y  246 (466)
T PHA03270        181 TQRLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRP-HAVLEGEPFGATCVAANY  246 (466)
T ss_pred             cceEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeeee
Confidence            4569999999999999998877655532 1223444445555433222 123345555555555443

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.92  E-value=0.19  Score=44.25  Aligned_cols=63  Identities=16%  Similarity=0.156  Sum_probs=34.1

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCC-c-ceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEee
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSD-G-DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG  180 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~-g-~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~  180 (286)
                      -.|.|..++..++|.|+=...+.. + ........+.++..|.+.+.+ -.++.|++..-.|.+..
T Consensus       289 ~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p-~PVL~Ge~YkAtC~vA~  353 (566)
T PHA03269        289 FSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIG-DPVLLGNPYAAYCKVNK  353 (566)
T ss_pred             cceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccC-CccccCCCceEEEEeee
Confidence            469999999999999985554322 1 112223445555555332221 12334555555555544

>PHA02633 hypothetical protein; Provisional

Probab=95.92  E-value=0.028  Score=34.70  Aligned_cols=38  Identities=21%  Similarity=0.354  Sum_probs=27.3

Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  153 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~  153 (286)
                      ....|.|.++..+|+|.|.|..+|..- ....++.|.|.
T Consensus        16 ~~~nLwilpa~~sDSGiYiC~~rn~t~-c~~~si~l~V~   53 (63)
T PHA02633         16 NCNNMLILNPTQSDSGIYMCITKNETY-SDMMKFDLCIC   53 (63)
T ss_pred             ccccEEEeccccccCcEEEEEEcCCCe-eEEEEEEEEEe
Confidence            446799999999999999999987532 22334555553

>PHA03271 envelope glycoprotein C; Provisional

Probab=95.91  E-value=0.55  Score=40.68  Aligned_cols=25  Identities=28%  Similarity=0.377  Sum_probs=19.2

Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcC
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRS  139 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~  139 (286)
                      ....|.|.+|+..|+|.|.-...+.
T Consensus       205 ~~m~v~I~svD~~t~Gy~~v~~~d~  229 (490)
T PHA03271        205 NTMGVEIRNVDYADNGYIQVIMRDP  229 (490)
T ss_pred             ceeeEEEEEeecccceEEEEEecCC
Confidence            3467999999999999776555553

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=95.90  E-value=0.041  Score=37.90  Aligned_cols=30  Identities=13%  Similarity=0.301  Sum_probs=19.8

Q ss_pred             CCeEEEEEeeecCCC-CCeEEEEeCCeeCCC
Q psy15667        208 GARTRVICGVTHGDP-PLTIRWLKDGKPLSP  237 (286)
Q Consensus       208 g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~  237 (286)
                      ++.+.|.|.+..-.| ...++|.|||..+..
T Consensus        16 ~~~~tL~C~a~gFyP~~I~v~W~kng~~~~~   46 (96)
T cd07697          16 QGQGIYLCLLENFFPDVIQVHWREGNSPSIL   46 (96)
T ss_pred             CCCEEEEEEEEEEeCCCeEEEEEECCEECcC
Confidence            455667776654333 467899999987643

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=95.85  E-value=0.064  Score=38.00  Aligned_cols=82  Identities=17%  Similarity=0.188  Sum_probs=45.8

Q ss_pred             eEEecCCCEEEEeeEeeecC---CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        164 VTAIDGEGLSIKCPVAGYPI---EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~p~---~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      +.+..|..++|.|.++|.-.   -.++|.|..+. .               .-.|......-. ...|.++.        
T Consensus         8 ~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg-~---------------lE~c~~~~~~g~-~~~~~~~r--------   62 (115)
T cd05721           8 VLASSNGAASLVCEYTYNGFSKEFRASLLKGADS-A---------------VEVCAVTGNMSN-QLQTSLDG--------   62 (115)
T ss_pred             eEEcCCCCEEEEEEecCCccccEEEEEEEEeCCC-C---------------cEEEEEEeCCCc-cccccCCC--------
Confidence            44567888999999977433   35888874322 1               112222100000 11133222        


Q ss_pred             ceeeec-CCCeeeEEEcccCCCCCeEEEEEE
Q psy15667        241 VNVSDL-DSFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       241 ~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ..++.. ....-.|.|.+++.+|++.|.|.-
T Consensus        63 ~tcs~~~s~ntv~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          63 FNCDGTLGNEQVNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             eEEeEeCCCCEEEEEEcCCCHHHCeEEEEEe
Confidence            112211 123557999999999999999954

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=95.81  E-value=0.031  Score=49.62  Aligned_cols=148  Identities=17%  Similarity=0.211  Sum_probs=44.6

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce--------ecCC------------ceE-EecCCCEEE
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV--------RLIP------------KVT-AIDGEGLSI  174 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~--------~~~~------------~~~-~~~g~~~~l  174 (286)
                      .+.|.|.+++.+|+|.|+-...+..+......+.|.|......        ...+            ... ...|+++.+
T Consensus        88 ~~~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~  167 (439)
T PF02480_consen   88 KGGLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHL  167 (439)
T ss_dssp             ----------------------------------------------------------SEEEEEE--SEEE--TT--EE-
T ss_pred             CCceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEE
Confidence            4679999999999999999998776665444556666432111        0111            112 236888877


Q ss_pred             EeeEeeecC------CeEEEEEcCCcc-------------------------cccc--cccCCCCCCCeEEEEEeeecCC
Q psy15667        175 KCPVAGYPI------EEVHWEKVPPKI-------------------------ESFA--FPFDGLPEGARTRVICGVTHGD  221 (286)
Q Consensus       175 ~c~~~~~p~------~~v~w~~~~~~~-------------------------~~~~--~~~~~~~~g~~~~l~c~~~~~~  221 (286)
                      .-.......      ..+.|...+...                         ..+.  .+......+.+....|....  
T Consensus       168 ~v~l~~~~~d~~~f~~~i~W~~~~~~~~C~~~riYE~CifHP~~p~Cl~P~~~~C~f~s~~~a~~~~~~~y~~C~~~~--  245 (439)
T PF02480_consen  168 SVHLQSEAHDDPPFSLEIDWYYMPTDPSCAEMRIYEPCIFHPHAPECLHPADARCSFASPLRAERLASRRYANCSPSG--  245 (439)
T ss_dssp             --EEEEEESSS--EEEEEEEEEE---TT-SEEEEEHHHHH-TTSHHHHS-TTGGGEES----SS-SEEEEEEEEBTTC--
T ss_pred             eEEEEeccCCCCCeeEEEEEEEecCCCCCceEEEeeecccCCCCccccCCCCCCceeecchhHHHHHHHhhcCCCCCC--
Confidence            766544322      257788732210                         1121  12355778899999996431  


Q ss_pred             CCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        222 PPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       222 p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                            |.++....... ....+.. ...+..|.+.++...++|.|.|.+.=
T Consensus       246 ------~~~~C~~~~~~~~~~~~~~-~~~~~~l~f~~a~~~~sGLYv~V~~~  290 (439)
T PF02480_consen  246 ------WPRRCPSTSHIEPVPGLRW-ASNGVDLQFTNAPESASGLYVFVVYY  290 (439)
T ss_dssp             -------TTTTEEEEEE---TTEEE--TTSSSEEESS--GGG-EEEEEEEEE
T ss_pred             ------CcCCCCchhccCcCccccc-cCCCcceEecCCCcccCceEEEEEEE
Confidence                  44444211000 0111111 12345689999999999999998753

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.68  E-value=0.057  Score=37.39  Aligned_cols=28  Identities=21%  Similarity=0.294  Sum_probs=23.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      +-.|.|..+++.|+|.|.-+.+|..|.+
T Consensus        70 nlaLlIkaAq~qDSG~Y~LEvT~~sG~V   97 (108)
T PF11465_consen   70 NLALLIKAAQPQDSGLYCLEVTNESGKV   97 (108)
T ss_dssp             TTEEEESS-SGGG-EEEEEEEEETTSCE
T ss_pred             CceEEEeecCcccCceEEEEEEcCCCcE
Confidence            5689999999999999999999999866

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=95.41  E-value=0.18  Score=43.21  Aligned_cols=79  Identities=27%  Similarity=0.443  Sum_probs=51.1

Q ss_pred             eccccccccCCCcEEEEEEee--cC-CCCeeEEeeCCEEcC-----------------CCCeeEeceEEecccc-eeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIAS--GN-PTPDIGWTLDGFELP-----------------TNNRFVIGQFVSGHGD-VISHV   65 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~--g~-p~p~v~W~~~~~~l~-----------------~~~~~~~~~~~~~~~~-~~~~l   65 (286)
                      ..+.++++..|..+.|.|...  |+ ....++|.--|-++.                 .+..|.++..-.-..+ ..++|
T Consensus       269 k~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STL  348 (500)
T PHA02914        269 KKFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTL  348 (500)
T ss_pred             cccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceE
Confidence            345677889999999999755  44 345788975543321                 2233443221111122 24569


Q ss_pred             EEcccccCCCeEEEEEEEcC
Q psy15667         66 NISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      +|.++.....|.|+|+|...
T Consensus       349 TIkka~I~N~GCY~~~a~~g  368 (500)
T PHA02914        349 TIKKAHINNAGCYEAQAFMG  368 (500)
T ss_pred             EeeeEEEEcCCceEEEEecC
Confidence            99999999999999999753

>KOG4597|consensus

Probab=95.32  E-value=0.029  Score=48.90  Aligned_cols=80  Identities=20%  Similarity=0.199  Sum_probs=54.4

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEe---CCeeC--CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLK---DGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~---~g~~~--~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                      .+.+++..+++|.+. |.+.+.|.|.+   ++..+  +..+.+.- ..-.....|.|-+..++|+|-|+|.|.|.+|...
T Consensus       207 ~vg~wetcS~tCg~~-G~q~r~V~c~qv~anr~~vv~~~nq~~e~-p~vtstcql~ic~ewq~~a~w~tCs~rcg~g~~~  284 (560)
T KOG4597|consen  207 FVGDWETCSSTCGVQ-GRQYRVVTCEQVFANRENVVMRPNQTVEN-PVVTSTCQLVICNEWQADAGWYTCSARCGAGFLR  284 (560)
T ss_pred             hcccchhhccccccc-CCcCceeeeehhhccccceeecCccccCC-cceeeeeeEEEcchhhcCCCceeeccccccceee
Confidence            466788888888764 77888888875   22211  11111000 0001245689999999999999999999999988


Q ss_pred             eEEEEEE
Q psy15667        279 YSSKLQV  285 (286)
Q Consensus       279 ~~~~L~V  285 (286)
                      ..+.+.+
T Consensus       285 rdv~c~s  291 (560)
T KOG4597|consen  285 RDVPCSS  291 (560)
T ss_pred             ccceeee
Confidence            8887765

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=95.30  E-value=0.16  Score=34.38  Aligned_cols=68  Identities=22%  Similarity=0.431  Sum_probs=45.4

Q ss_pred             ccccccccCCCcEEEEEEeecC-----CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-----PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      .+...++..|++++..|.....     .+..+.|..|+..++.+....+      ++ ..+.+++.+.....+-.|.|.-
T Consensus         9 ~p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~~iP~~qy~~i------n~-~~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen    9 SPPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGEKIPGSQYRVI------ND-TVSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             ECSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSCESTCGCEEEE------ST-TEEEEEESS--SSEEEEEEEEE
T ss_pred             ecCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCEECChhHccee------CC-eEEEEEEccCCCCCceEEEEEE
Confidence            4566788999999999987743     5668999999987775433222      22 2356888888877777888863

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=95.20  E-value=0.038  Score=40.05  Aligned_cols=70  Identities=16%  Similarity=0.345  Sum_probs=38.7

Q ss_pred             cCCCcEEEEEEeecC-----CCCeeEEeeCCEEcC----CCCee--------EeceEEecccceeEEEEEcccccCCCeE
Q psy15667         15 QPGPAVSLKCIASGN-----PTPDIGWTLDGFELP----TNNRF--------VIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~----~~~~~--------~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      .-.++|.|.|.+...     +.-.|.|.++|..+-    ...+.        .++++.  .|  ..+|.+...+.- .|.
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~--kG--~aSL~~~~~~a~-~Gn   99 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELL--KG--NASLKMDKSDAV-EGN   99 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGG--GT--B--EEEEHHHHH--EE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhh--CC--CEEEEEcchhcc-ccc
Confidence            468999999988752     234689999988762    11111        111111  12  134777775555 799


Q ss_pred             EEEEEEcCCEEE
Q psy15667         78 YACVAENRAGTC   89 (286)
Q Consensus        78 Y~C~a~n~~g~~   89 (286)
                      |+|++.....+.
T Consensus       100 YTCeVt~~~~eg  111 (130)
T PF08204_consen  100 YTCEVTELSREG  111 (130)
T ss_dssp             EEEEEEETTEEE
T ss_pred             eEEEEEecCCCc
Confidence            999998765543

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>PHA03286 envelope glycoprotein E; Provisional

Probab=94.76  E-value=0.6  Score=40.83  Aligned_cols=38  Identities=16%  Similarity=0.212  Sum_probs=31.6

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  153 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~  153 (286)
                      ...|.|.+.+.+++|.|+-...|..|......+.+.|.
T Consensus       126 ~~~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~  163 (492)
T PHA03286        126 GKELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVS  163 (492)
T ss_pred             CCceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEe
Confidence            46799999999999999999998877765556677774

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=94.74  E-value=0.12  Score=35.81  Aligned_cols=70  Identities=19%  Similarity=0.269  Sum_probs=36.8

Q ss_pred             CCCCCeEEEEEeeecCC-C-CCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGD-P-PLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~-p-~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +..+..+.|.|.+..-. | ...+.|.++|.. ...........+   ...+.|.|..-.-.-.-.|+|.+.....
T Consensus        16 l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~-~~~~t~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V~H~~l   90 (99)
T cd04986          16 LLLGSSASLTCTLSGLRDPEGAVFTWTPSGGK-EAVQTSAESDQCGCYSVSSVLPGCAEEWNKGEPFACTVTHPEG   90 (99)
T ss_pred             hCcCCccEEEEEEeccCCCCCeEEEEEECCcc-CcEEcCcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEEECCCc
Confidence            33566778888776533 3 367889999874 110000000001   1133455443222334569999987643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=94.66  E-value=0.19  Score=42.58  Aligned_cols=21  Identities=14%  Similarity=0.281  Sum_probs=17.2

Q ss_pred             cEEEEEEeecCCCC--eeEEeeC
Q psy15667         19 AVSLKCIASGNPTP--DIGWTLD   39 (286)
Q Consensus        19 ~~~l~C~~~g~p~p--~v~W~~~   39 (286)
                      .++|+|.+.|.-+.  .++|.||
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            68999999996444  6779999

>PHA03283 envelope glycoprotein E; Provisional

Probab=94.31  E-value=0.82  Score=40.86  Aligned_cols=149  Identities=13%  Similarity=0.127  Sum_probs=80.2

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce---------ecCCc-------------eEEecCCCEE
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV---------RLIPK-------------VTAIDGEGLS  173 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~---------~~~~~-------------~~~~~g~~~~  173 (286)
                      ...|.|.+++.+++|.|+-..++..+ .....+.|.|...+..         ...+.             .....|+++.
T Consensus       133 ~~~l~I~~at~~~aGVYtly~r~d~~-~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~  211 (542)
T PHA03283        133 RSVLQIQRATPNIAGVYTLHVSSDGM-MKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFD  211 (542)
T ss_pred             CCeeEEEecccccCeEEEEEecCCCc-eEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCcee
Confidence            46799999999999999999998766 4444566777552110         11110             1124688887


Q ss_pred             EEeeEeee---c--CCeEEEEEcCCccc-----------------c--------c--ccccCCCCCCCeEEEEEeeecCC
Q psy15667        174 IKCPVAGY---P--IEEVHWEKVPPKIE-----------------S--------F--AFPFDGLPEGARTRVICGVTHGD  221 (286)
Q Consensus       174 l~c~~~~~---p--~~~v~w~~~~~~~~-----------------~--------~--~~~~~~~~~g~~~~l~c~~~~~~  221 (286)
                      +.-.....   +  ...+.|...+....                 .        +  ..+......+.+....|....+ 
T Consensus       212 lsi~l~s~~~d~~fs~~i~Wyy~p~~~~C~~mrIYEtCIfHP~aPeCL~P~da~CsFaSp~ra~~l~~R~Y~~Cs~~~~-  290 (542)
T PHA03283        212 LSVHLESDIGDPSFSATIDWYYMNTSSSCDLFRVYETCIFHPTAMACLHPEDPACSFTSPARATKILHRVYGNCSPRGD-  290 (542)
T ss_pred             EeEEEeeccCCCCceEEEEEEEecCCCCCceEEeeeecccCCCchhhcCcCCCCceeecchhHHHHHHHhhcCCCCccC-
Confidence            75544321   1  23577887432111                 0        0  0111123344555555643211 


Q ss_pred             CCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        222 PPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       222 p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                           .|.+...................+..|.+.++..+++|.|.|+..
T Consensus       291 -----~wp~~C~~~~~~~~~~~l~~~~~~v~L~f~nap~~~SGLYVfVv~  335 (542)
T PHA03283        291 -----RWPSRCHSTLLGNRPHFIQPAQNRVDLLFKNAPASASGLYVFVLL  335 (542)
T ss_pred             -----CCCcCCcchhccCCcccceecCCCcceEeccCCcccCceEEEEEE
Confidence                 233333211111111111112234568899999999999999875

>PHA03273 envelope glycoprotein C; Provisional

Probab=94.04  E-value=1.8  Score=38.16  Aligned_cols=63  Identities=24%  Similarity=0.338  Sum_probs=34.5

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEee
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG  180 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~  180 (286)
                      -.|.|..++..++|.|+=...+..+.. ......+.++..|.+.+.+ -.++.|++..-.|.+..
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~-~PvL~Ge~y~A~C~aa~  261 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSV-HPSLKGENYRAVCVVAS  261 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccC-CccccCCCceEEEEeee
Confidence            459999999999999985554543332 1122333334444433222 12334555555555544

>PHA03042 CD47-like protein; Provisional

Probab=93.89  E-value=0.33  Score=39.54  Aligned_cols=59  Identities=17%  Similarity=0.294  Sum_probs=37.7

Q ss_pred             CCCcEEEEEEeecC-----CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667         16 PGPAVSLKCIASGN-----PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        16 ~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      -.+++.+.|.+...     -.-.|.|..||..+-..+.           ....+|...... .=.|.|+|+|.+..
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~-----------tn~aSL~~~f~~-~l~GNYTCEv~~l~   93 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNN-----------TNTSSLKFNFSK-NLSGNYTCEAINKF   93 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecC-----------CcceEEEEeccc-cCCCceeEEEeecc
Confidence            57899999988742     3457999999987643211           111234443332 22699999998754

>KOG4597|consensus

Probab=93.64  E-value=0.084  Score=46.18  Aligned_cols=78  Identities=17%  Similarity=0.084  Sum_probs=54.6

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEee---CCEEc--CCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL---DGFEL--PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~---~~~~l--~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      --+-.+-+..|++..++|-+.|.|.+.|+|-+   |+..+  ..+..+  +..   .-..+-.|.|-+....|+|-|+|.
T Consensus       201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq~~--e~p---~vtstcql~ic~ewq~~a~w~tCs  275 (560)
T KOG4597|consen  201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQTV--ENP---VVTSTCQLVICNEWQADAGWYTCS  275 (560)
T ss_pred             cCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcccc--CCc---ceeeeeeEEEcchhhcCCCceeec
Confidence            34556678899999999999999999999975   33222  211111  000   011123488999999999999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.+..|..
T Consensus       276 ~rcg~g~~  283 (560)
T KOG4597|consen  276 ARCGAGFL  283 (560)
T ss_pred             ccccccee
Confidence            99988853

>PHA03273 envelope glycoprotein C; Provisional

Probab=93.62  E-value=4  Score=36.10  Aligned_cols=71  Identities=17%  Similarity=0.190  Sum_probs=40.9

Q ss_pred             cccCCCcEEEEEEeecCCCC---eeEEeeCCEEcCCCCeeEeceEEeccc--ceeEEEEEcccccCC-CeEEEEEEE
Q psy15667         13 TLQPGPAVSLKCIASGNPTP---DIGWTLDGFELPTNNRFVIGQFVSGHG--DVISHVNISHVTVED-GGEYACVAE   83 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~I~~~~~~D-~G~Y~C~a~   83 (286)
                      -+.+|+...=.|.+...-+|   .+.|++||.++...............+  ...+.|++.+....+ .=..+|.+.
T Consensus       246 PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~~V~~~~~~~~~~~~~~~gl~T~vStlt~~~~~~~~~PP~lrC~v~  322 (486)
T PHA03273        246 PSLKGENYRAVCVVASYFPHSSVKLRWYKNAKEVDFTKYVTNASSVWVDGLITRISTLSIPVDPDEEYTPSLRCSIE  322 (486)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCeeccccccceeeEEEecCCceEEEEEEeccCcccCCCCCCceEEEE
Confidence            45789999999998875333   688999999886211111111111112  223445566543322 347799984

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=93.22  E-value=0.16  Score=41.26  Aligned_cols=47  Identities=23%  Similarity=0.370  Sum_probs=34.1

Q ss_pred             CCCeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         30 PTPDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        30 p~p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ..|.+.|.-. |+.|..+.++.+    ...|    .|.+.+...+++|.|+|...-
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~nI----T~TG----~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYVNI----TETG----KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCCCcccCCCCeEEE----ccCc----eEEeeccccccCCceEEEEEE
Confidence            4578999975 455655555544    2233    388999999999999999754

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=93.06  E-value=0.49  Score=32.49  Aligned_cols=64  Identities=17%  Similarity=0.263  Sum_probs=31.1

Q ss_pred             eEEEEEeeecCCC-CCeEEEEeCCeeCCCCC---CceeeecCC--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        210 RTRVICGVTHGDP-PLTIRWLKDGKPLSPRF---PVNVSDLDS--FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       210 ~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~---~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .+.|.|.+..-.| ...++|+|||+. ....   .......+.  ....|.+..-.-...-.|+|.+.-..
T Consensus        18 ~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          18 SVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             cEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            3455555443222 367889999986 3221   001110111  12334444332223677999998654

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>PHA03271 envelope glycoprotein C; Provisional

Probab=93.06  E-value=5.7  Score=34.73  Aligned_cols=22  Identities=23%  Similarity=0.333  Sum_probs=17.3

Q ss_pred             EEEEEcccccCCCeEEEEEEEc
Q psy15667         63 SHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ..|.|.++...|+|.|+-...+
T Consensus       207 m~v~I~svD~~t~Gy~~v~~~d  228 (490)
T PHA03271        207 MGVEIRNVDYADNGYIQVIMRD  228 (490)
T ss_pred             eeEEEEEeecccceEEEEEecC
Confidence            4589999999999977555543

>PHA02982 hypothetical protein; Provisional

Probab=92.87  E-value=0.28  Score=38.33  Aligned_cols=28  Identities=21%  Similarity=0.380  Sum_probs=24.3

Q ss_pred             CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        248 SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       248 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ...++|+|.++..+..|=|+|+|....+
T Consensus        97 g~~STLTIkk~~i~N~GCYtc~~ks~~~  124 (251)
T PHA02982         97 GNSSTFTMKKPDPQNLGCFTCEAKDAEG  124 (251)
T ss_pred             ccceeEEeccCCcccCCceEEEEecCCC
Confidence            4477999999999999999999987554

>PHA03269 envelope glycoprotein C; Provisional

Probab=92.76  E-value=5.5  Score=35.52  Aligned_cols=33  Identities=15%  Similarity=0.204  Sum_probs=26.4

Q ss_pred             cccCCCcEEEEEEeecCCCC---eeEEeeCCEEcCC
Q psy15667         13 TLQPGPAVSLKCIASGNPTP---DIGWTLDGFELPT   45 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~~   45 (286)
                      -+.+|+...=.|.+...-+|   .+.|++|+.++..
T Consensus       338 PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~~V~~  373 (566)
T PHA03269        338 PVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFGNIGK  373 (566)
T ss_pred             ccccCCCceEEEEeeeecCCCceEEEEEeCCcccCc
Confidence            46789999999998875333   6889999998874

>PHA03270 envelope glycoprotein C; Provisional

Probab=92.56  E-value=6.8  Score=34.41  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=18.7

Q ss_pred             EEEcccccCCCeEEEEEEEcCC
Q psy15667         65 VNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      |+|..++.+.+|.|+=...+..
T Consensus       184 L~I~slt~aTeGvY~Wr~~~~~  205 (466)
T PHA03270        184 LVIQELTLATQGMYYWARGPAD  205 (466)
T ss_pred             EEEEEcccccceEEEEEEecCC
Confidence            8999999999999998865533

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=92.19  E-value=0.38  Score=33.41  Aligned_cols=38  Identities=18%  Similarity=0.367  Sum_probs=29.0

Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  152 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v  152 (286)
                      ...+|.|..+.++|+|.|.-+..+..|......+.+.|
T Consensus        69 enlaLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   69 ENLALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             TTTEEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             cCceEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            45689999999999999999999999987555555443

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=92.14  E-value=0.81  Score=30.29  Aligned_cols=34  Identities=24%  Similarity=0.403  Sum_probs=24.0

Q ss_pred             eEEEcccCCCCCeEEEEEE-EecccceeeEEEEEE
Q psy15667        252 LLSINSVSAAHSGEYTCVA-SNTAAQARYSSKLQV  285 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a-~N~~g~~~~~~~L~V  285 (286)
                      .........+|+|.++|.| .|..-.......|.|
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            4556677889999999999 666555555555543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PHA03042 CD47-like protein; Provisional

Probab=91.92  E-value=1.4  Score=35.99  Aligned_cols=68  Identities=25%  Similarity=0.380  Sum_probs=40.8

Q ss_pred             CeEEEEEeeec----CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        209 ARTRVICGVTH----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       209 ~~~~l~c~~~~----~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+.++|.+..    ....-.+.|..++..+...+..       ....|.+. -..+-.|+|||+|.+..-+.++...|.
T Consensus        32 ~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-------n~aSL~~~-f~~~l~GNYTCEv~~l~n~gk~~IeLk  103 (286)
T PHA03042         32 KTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-------NTSSLKFN-FSKNLSGNYTCEAINKFNKIKNTIELQ  103 (286)
T ss_pred             ceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-------cceEEEEe-ccccCCCceeEEEeecccCccEEEEEE
Confidence            45566665532    1124568999999866432211       12345443 334449999999998766667776665

>PHA03281 envelope glycoprotein E; Provisional

Probab=90.42  E-value=3.9  Score=36.88  Aligned_cols=148  Identities=17%  Similarity=0.170  Sum_probs=80.2

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC--cee---cCCc-------------eEEecCCCEEEEee
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP--YVR---LIPK-------------VTAIDGEGLSIKCP  177 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~--~~~---~~~~-------------~~~~~g~~~~l~c~  177 (286)
                      .+.|.|.+++.+++|.|+-..+...|....+.+.++|...+  .+.   ..++             .....|+++.+...
T Consensus       297 ~~vL~I~nAT~~naGVYtly~rg~~G~s~~svfLVtVkg~~~~rip~p~Vtpk~hga~F~vknYhShVF~pGDTFsl~v~  376 (642)
T PHA03281        297 PGVLKFEHMEAHHAGVYIWNLQGSDGENMYATFLVKLKGDEENHIDLPAVTPKPKGAEFHMWHYHSHVFSVGDTFSLAMH  376 (642)
T ss_pred             CCeeEEEecccccceeEEEEecCCCCcceeEEEEEEecCCcccCCCCCCccccccCceEEEeccceeEecCCCeeEEEEE
Confidence            46799999999999999988887667654546667775422  111   1110             11236888776655


Q ss_pred             Eeee----c-CCeEEEEEcCCccc-------------------------ccc--cccCCCCCCCeEEEEEeeecCCCCCe
Q psy15667        178 VAGY----P-IEEVHWEKVPPKIE-------------------------SFA--FPFDGLPEGARTRVICGVTHGDPPLT  225 (286)
Q Consensus       178 ~~~~----p-~~~v~w~~~~~~~~-------------------------~~~--~~~~~~~~g~~~~l~c~~~~~~p~~~  225 (286)
                      ....    | ...+.|...+....                         .|.  .+......+.+....|... +.    
T Consensus       377 L~s~ihD~pFsleI~Wyy~p~~p~C~~mrIYEtCIFHP~APeCL~Peda~CsFASP~ra~~Va~R~Y~nCs~~-~~----  451 (642)
T PHA03281        377 LQYKIHDAPFDLLLEWLYVPIDPTCQPMRLYSACLYHENAPQCLSHENPECTFASPHIAQRVANTVYQNCEHA-DN----  451 (642)
T ss_pred             EeeeccCCCceeEEEEEEecCCCCCceEEeecccccCCCchhhcCcCCCCcccccchhHHHHHHHHhcCCCCC-CC----
Confidence            5432    1 23577887432111                         011  1112234455555666432 12    


Q ss_pred             EEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        226 IRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       226 ~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                        |..+...+.... ...+.. ...+..|.+.++..+++|.|.|++.
T Consensus       452 --wp~~C~sis~m~p~~gL~~-~~n~vdL~F~nApasaSGLYVfVl~  495 (642)
T PHA03281        452 --YTADCLAISHMEPGFGLEI-HDGGSALKFVDAAESLSGLYVFIIH  495 (642)
T ss_pred             --CCCCCCcccccCccccccc-cCCCcceEeccCCcccCceEEEEEE
Confidence              332222111111 011111 1123458899999999999999875

>PHA03282 envelope glycoprotein E; Provisional

Probab=89.27  E-value=2.8  Score=37.07  Aligned_cols=23  Identities=26%  Similarity=0.463  Sum_probs=20.1

Q ss_pred             cceEEEccCCCCCCeeEEEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARR  138 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~  138 (286)
                      +.+|.|.++..+|+|.|+-.+..
T Consensus       123 n~tl~l~~a~~~DsG~Y~L~~~~  145 (540)
T PHA03282        123 NGTLVLREARETDSGMYVLSVSR  145 (540)
T ss_pred             cceEEEeeccccCCceEEEEecC
Confidence            46799999999999999998754

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.02  E-value=1.3  Score=29.28  Aligned_cols=22  Identities=36%  Similarity=0.634  Sum_probs=17.9

Q ss_pred             EEEcccccCCCeEEEEEE-EcCC
Q psy15667         65 VNISHVTVEDGGEYACVA-ENRA   86 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a-~n~~   86 (286)
                      +.....+..|+|...|.| .+..
T Consensus        45 ~~~~~~~~~d~G~w~C~a~~~~~   67 (80)
T PF05790_consen   45 VSTFTPTTEDSGTWVCTASDNEP   67 (80)
T ss_dssp             EEEESBTCGGSEEEEEEEEECTT
T ss_pred             EEEecCCCCCCEEEEEEEcCCce
Confidence            457888899999999999 5543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=87.23  E-value=6.5  Score=26.38  Aligned_cols=71  Identities=23%  Similarity=0.230  Sum_probs=39.0

Q ss_pred             CCeeEecccccccc--CC--CcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQ--PG--PAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~--~G--~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||+|.......++.  ++  +...|...+.+. .+.+.|+.||..+.......             .+.+   .....|.
T Consensus        10 ~l~I~~P~~g~~~~~~~~~~~~~~l~l~a~~~-~~~~~W~vdg~~~g~~~~~~-------------~~~~---~~~~~G~   72 (89)
T PF06832_consen   10 PLRITSPPDGAVLALDPGIPERQPLVLKAAGG-RGPVYWFVDGEPLGTTQPGH-------------QLFW---QPDRPGE   72 (89)
T ss_pred             CCEEEecCCCCEEEeCCCCCccceEEEEEeCC-CCcEEEEECCEEcccCCCCC-------------eEEe---CCCCCee
Confidence            55666544444432  22  245555666655 44899999999984322110             0111   2234678


Q ss_pred             EEEEEEcCCEEE
Q psy15667         78 YACVAENRAGTC   89 (286)
Q Consensus        78 Y~C~a~n~~g~~   89 (286)
                      |+-.+....|..
T Consensus        73 h~l~vvD~~G~~   84 (89)
T PF06832_consen   73 HTLTVVDAQGRS   84 (89)
T ss_pred             EEEEEEcCCCCE
Confidence            877776666543

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PHA03052 Hypothetical protein; Provisional

Probab=85.54  E-value=3.7  Score=25.92  Aligned_cols=33  Identities=21%  Similarity=0.469  Sum_probs=26.0

Q ss_pred             cccccCCCcEEEEEEee-cCC--CCeeEEeeCCEEc
Q psy15667         11 EQTLQPGPAVSLKCIAS-GNP--TPDIGWTLDGFEL   43 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~-g~p--~p~v~W~~~~~~l   43 (286)
                      -..+..|.++++.|.+. |.|  .+.|.|.-|+..+
T Consensus         6 ~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~~~~   41 (69)
T PHA03052          6 GIVTSLGSNLTITCKVSLRPPTTDADVFWISNGMYY   41 (69)
T ss_pred             cEEEEccCCceEeEEEEecCCCcceEEEEEeCCcEE
Confidence            34678899999999887 443  4578999998877

>KOG0613|consensus

Probab=83.85  E-value=1.6  Score=43.34  Aligned_cols=132  Identities=18%  Similarity=0.101  Sum_probs=84.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |++.....++....+..++|.|...+.+.|. +.|++++.....+.....   ...+..+...+.|..+...+.+.|.|.
T Consensus       335 ~v~~~~~~~v~a~d~~~v~m~~~~~~~~~p~~~~~~~~~~~~~~~~~~~~---~~~~~~ts~~~~~~~~~~~e~~~~~~~  411 (1205)
T KOG0613|consen  335 PVGLVRNLSVTARDNTLVEMPTALSGTQKPDEAQGYHGEEVSSESLGALP---CPVGTVTSHTYTIKDAGPGEGYFTRVP  411 (1205)
T ss_pred             cccccccceeccccCcceeecccccCCcCCchheeecccccccccccccc---cccccccCcchhhhhcCcccccccccc
Confidence            4455667777888999999999999999887 999987544322111100   011222234577899999999999999


Q ss_pred             EEcCCEEEEEec-------------------------------------CCC---CCeeEEEeeCCccCcCCC------C
Q psy15667         82 AENRAGTCEITP-------------------------------------YDS---GPYLIAWFKDGRQIPGRT------S  115 (286)
Q Consensus        82 a~n~~g~~~~~~-------------------------------------~~~---~~~~~~W~~~g~~l~~~~------~  115 (286)
                      |.|..|.-...+                                     ..+   .-..++|++++-....+.      .
T Consensus       412 a~n~~g~~~~~~~~~vs~~~~gt~~~~~kk~~~~t~~L~~~~~i~~~~~~~s~~~~~~~~tt~~~~~~~s~~s~~l~r~~  491 (1205)
T KOG0613|consen  412 AVNKGGTEQTIAESTVSEEMPGTQPPKFKKDVSTTDLLTVKDEITVRTPDSSTSMPMTTVTTIKDGLPLSDRSVTLTRDV  491 (1205)
T ss_pred             eeccCCcccccchhhcccccCCCCCccccccccccccccCCcccccccCCCCccccceeEeeccCCcccccccccccccc
Confidence            999888532100                                     000   013456777766554332      2


Q ss_pred             cceEEEccCCCCCCeeEEEEEE
Q psy15667        116 STSLVINPVGREDRGIYQCIAR  137 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~  137 (286)
                      ...|++.-..+.|+|.|.-...
T Consensus       492 ~tslLlk~~~~~~~A~~~~a~~  513 (1205)
T KOG0613|consen  492 LTSLLLKVASLSDGAQYTRALR  513 (1205)
T ss_pred             hhhheeeccCCCccchhhhhhh
Confidence            3457777778888888854443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	286
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-35
2v5r_A	391	Structural Basis For Dscam Isoform Specificity Leng		1e-09
2v5m_A	388	Structural Basis For Dscam Isoform Specificity Leng		5e-09
2v5s_A	394	Structural Basis For Dscam Isoform Specificity Leng		5e-09
2yd6_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		4e-08
3p3y_A	404	Crystal Structure Of Neurofascin Homophilic Adhesio		2e-07
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		2e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		4e-06
1cs6_A	382	N-terminal Fragment Of Axonin-1 From Chicken Length		9e-05
2om5_A	381	N-Terminal Fragment Of Human Tax1 Length = 381		6e-06
2dm3_A	110	Solution Structure Of The Second Ig Domain Of Human		9e-06
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		9e-06
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		1e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		3e-05
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		1e-04
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		4e-05
2edj_A	100	Solution Structure Of The Fifth Ig-Like Domain From		6e-05
2yd9_A	304	Crystal Structure Of The N-Terminal Ig1-3 Module Of		6e-05
2yd1_A	212	Crystal Structure Of The N-Terminal Ig1-2 Module Of		9e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		9e-05
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-04
3pxj_A	210	Tandem Ig Repeats Of Dlar Length = 210		1e-04
2yd5_A	214	Crystal Structure Of The N-Terminal Ig1-2 Module Of		1e-04
3caf_A	100	Crystal Structure Of Hfgfr2 D2 Domain Length = 100		1e-04
1wvz_A	104	Solution Structure Of The D2 Domain Of The Fibrobla		1e-04
3dar_A	105	Crystal Structure Of D2 Domain From Human Fgfr2 Len		1e-04
3ojm_B	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
3oj2_C	231	Crystal Structure Of Fgf1 Complexed With The Ectodo		2e-04
1ii4_E	220	Crystal Structure Of Ser252trp Apert Mutant Fgf Rec		2e-04
1e0o_B	219	Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin C		2e-04
2fdb_P	220	Crystal Structure Of Fibroblast Growth Factor (Fgf)		2e-04
1iil_E	220	Crystal Structure Of Pro253arg Apert Mutant Fgf Rec		2e-04
1ev2_E	220	Crystal Structure Of Fgf2 In Complex With The Extra		2e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		2e-04
3kld_A	384	Ptprg Cntn4 Complex Length = 384		3e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		2e-04
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		4e-04
1ie5_A	107	Nmr Structure Of The Third Immunoglobulin Domain Fr		2e-04
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		3e-04
2yd4_A	210	Crystal Structure Of The N-Terminal Ig1-2 Module Of		3e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		3e-04
3pxh_A	201	Tandem Ig Domains Of Tyrosine Phosphatase Lar Lengt		5e-04
2eo9_A	118	Solution Structure Of The Fifth Ig-Like Domain From		3e-04
2jll_A	389	Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389		3e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		4e-04
3grw_A	241	Fgfr3 In Complex With A Fab Length = 241		4e-04
2xyc_A	291	Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291		4e-04
2vra_A	208	Drosophila Robo Ig1-2 (Monoclinic Form) Length = 20		4e-04
2vr9_A	217	Drosophila Robo Ig1-2 (Tetragonal Form) Length = 21		4e-04
2kdg_A	100	Solution Structure Of The 1st Ig Domain Of Myotilin		5e-04
1ry7_B	334	Crystal Structure Of The 3 Ig Form Of Fgfr3c In Com		5e-04
3kvq_A	108	Crystal Structure Of Vegfr2 Extracellular Domain D7		6e-04
3v2a_R	772	Vegfr-2VEGF-A Complex Structure Length = 772		6e-04

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score =  145 bits (365), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 96/320 (30%), Positives = 145/320 (45%), Gaps = 73/320 (22%)
Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP++  +F E+T++PGP+V LKC+A GNPTP+I W LDG ++  N+R+ +GQ+V+ +GDV
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488
Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYD---------SGPYL---- 100
           +S++NI+ V   DGG Y C+A+++ G  E +        PY          +G  L    
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548
Query: 101 ---------IAWFKDGRQIPGRTSST-----SLVINPVGRE-DRGIYQCIARRSDGDVAQ 145
                    I W +D R +P           +L+I  V R  D+  Y C+A+  +G  A+
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608
Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           GS E+Q+  LP  R+IP                                   FAF     
Sbjct: 609 GSLEVQVMVLP--RIIP-----------------------------------FAFEEGPA 631
Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGE 265
             G    + C V  GD PL I W  DG+ +S                       A+H+G 
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691
Query: 266 YTCVASNTAAQARYSSKLQV 285
           +TC A N A   ++++ L V
Sbjct: 692 FTCHARNLAGHQQFTTPLNV 711

>pdb|2V5R|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 391

Iteration: 1
 Score = 60.1 bits (144), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 56/186 (30%), Positives = 78/186 (41%), Gaps = 47/186 (25%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P   + FI+  L    + SL C+A   PTP   W     E  T  + V+        D +
Sbjct: 218 PQDKHQFIDVEL--ASSYSLLCMAQSYPTPSFRW-YKFIEGTTRKQAVV------LNDRV 268
Query: 63  SHVN----ISHVTVEDGGEYACVAENRAG--------------TCEITP----------- 93
             V+    I    VED G+Y CV  N  G              + +I P           
Sbjct: 269 KQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPA 328
Query: 94  -----YDSGPY-LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
                Y   P   ++W KDG+ I G + S  L I  V +ED+G+YQC   R+D + A+ S
Sbjct: 329 VFTCQYTGNPIKTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEAS 385
Query: 148 AELQLG 153
           AEL+LG
Sbjct: 386 AELKLG 391

>pdb|2V5M|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 388

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 45/175 (25%)
Query: 14  LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN----ISH 69
           L     +SL C A G P P   W     E  T  + V+        D +  V+    I  
Sbjct: 224 LMVAHTISLLCPAQGFPAPSFRW-YKFIEGTTRKQAVV------LNDRVKQVSGTLIIKD 276
Query: 70  VTVEDGGEYACVAENRAG--------------TCEITP----------------YDSGPY 99
             VED G+Y CV  N  G              + +I P                Y   P 
Sbjct: 277 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 336
Query: 100 -LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
             ++W KDG+ I G + S  L I  V +ED+G+YQC   R+D + A+ SAEL+LG
Sbjct: 337 KTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEASAELKLG 388

>pdb|2V5S|A Chain A, Structural Basis For Dscam Isoform Specificity Length = 394

Iteration: 1
 Score = 58.2 bits (139), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 53/175 (30%), Positives = 72/175 (41%), Gaps = 45/175 (25%)
Query: 14  LQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN----ISH 69
           L     +SL C A G P P   W     E  T  + V+        D +  V+    I  
Sbjct: 230 LMVAHTISLLCPAQGFPAPSFRW-YKFIEGTTRKQAVV------LNDRVKQVSGTLIIKD 282
Query: 70  VTVEDGGEYACVAENRAG--------------TCEITP----------------YDSGPY 99
             VED G+Y CV  N  G              + +I P                Y   P 
Sbjct: 283 AVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPI 342
Query: 100 -LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
             ++W KDG+ I G + S  L I  V +ED+G+YQC   R+D + A+ SAEL+LG
Sbjct: 343 KTVSWMKDGKAI-GHSESV-LRIESVKKEDKGMYQCFV-RNDRESAEASAELKLG 394

>pdb|2YD6|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Delta Length = 212

Iteration: 1
 Score = 55.5 bits (132), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 56/203 (27%), Positives = 76/203 (37%), Gaps = 52/203 (25%)
Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TPP  T + ++QT   G   S  C A+G+P P I W   G ++ +N RF + +F  G G 
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKV-SNQRFEVIEFDDGSGS 63
Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT----------------PYDSGPYL---- 100
           V+    +   T  D   Y CVA N  G   ++                  D GP L    
Sbjct: 64  VLRIQPLR--TPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVE 121
Query: 101 ------------------IAWFKD----------GRQIPGRTSST-SLVINPVGREDRGI 131
                             I WFKD          GR    R+ S  +L I      D+G 
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRSESIGALQIEQSEESDQGK 181
Query: 132 YQCIARRSDGDVAQGSAELQLGG 154
           Y+C+A  S G      A L + G
Sbjct: 182 YECVATNSAGTRYSAPANLYVRG 204

>pdb|3P3Y|A Chain A, Crystal Structure Of Neurofascin Homophilic Adhesion Complex In Space Group P6522 Length = 404

Iteration: 1
 Score = 53.1 bits (126), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 29/81 (35%), Positives = 44/81 (54%), Gaps = 8/81 (9%)
Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           Q +  G  + L+CIASG PTPDI W   G +LP++         +   +    + I++V+
Sbjct: 232 QMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDK--------AKFENFNKALRITNVS 283
Query: 72  VEDGGEYACVAENRAGTCEIT 92
            ED GEY C+A N+ G+   T
Sbjct: 284 EEDSGEYFCLASNKMGSIRHT 304

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 49.7 bits (117), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 28/72 (38%), Positives = 36/72 (50%), Gaps = 9/72 (12%)
Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
           G  +   C+ASG P P + W  DG  L + NR      VSG       +  S + +ED G
Sbjct: 309 GSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIE----VSG-----GELRFSKLVLEDSG 359
Query: 77  EYACVAENRAGT 88
            Y CVAEN+ GT
Sbjct: 360 MYQCVAENKHGT 371

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 48.5 bits (114), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 48/172 (27%), Positives = 67/172 (38%), Gaps = 49/172 (28%)
Query: 17  GPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
           G  V+L+C A GNP P I W  LDG +          +++S        ++I +V  ED 
Sbjct: 222 GQMVTLECFAFGNPVPQIKWRKLDGSQ--------TSKWLSSE----PLLHIQNVDFEDE 269
Query: 76  GEYACVAENRAG------------------TCEITPYDSGPYL-------------IAWF 104
           G Y C AEN  G                      T  D G  L             + W 
Sbjct: 270 GTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWL 329
Query: 105 KDGRQIPGRT----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           +DG+ +  +     S   L  + +  ED G+YQC+A    G V   SAEL +
Sbjct: 330 RDGQPLASQNRIEVSGGELRFSKLVLEDSGMYQCVAENKHGTV-YASAELTV 380

>pdb|1CS6|A Chain A, N-terminal Fragment Of Axonin-1 From Chicken Length = 382

Iteration: 1
 Score = 44.3 bits (103), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 79/375 (21%), Positives = 117/375 (31%), Gaps = 126/375 (33%)
Query: 20  VSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNISH-VTVED 74
           V+L C A  NP     W ++G EL     +  R V G  V           IS+ V  +D
Sbjct: 25  VTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGDLV-----------ISNPVKAKD 73
Query: 75  GGEYACVAENRAGTC-------------EITPYDSGPYLIA------------------- 102
            G Y CVA N  GT              E +  +  P  I                    
Sbjct: 74  AGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALS 133
Query: 103 --WF---------KDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS----DGDVAQGS 147
             W           DGR+   +T+  +L I      D G Y C A          V    
Sbjct: 134 YRWLLNEFPNFIPADGRRFVSQTTG-NLYIAKTEASDLGNYSCFATSHIDFITKSVFSKF 192
Query: 148 AELQLGGLPYVRLIPKVT--------AIDGEGLSIKCPVAGYPIEEVHWEKVPPK----- 194
           ++L L      +  P +         A+ G+ ++++C   G P+ ++ W K+        
Sbjct: 193 SQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW 252
Query: 195 --------IESFAFPFDGLPE-----------------------------------GART 211
                   I++  F  +G  E                                   G+  
Sbjct: 253 LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDL 312
Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTCVAS 271
           R  C V  G P   +RWL+DG+PL+ +                        SG Y CVA 
Sbjct: 313 RWSC-VASGKPRPAVRWLRDGQPLASQ-----NRIEVSGGELRFSKLVLEDSGMYQCVAE 366
Query: 272 NTAAQARYSSKLQVK 286
           N       S++L V+
Sbjct: 367 NKHGTVYASAELTVQ 381

>pdb|2OM5|A Chain A, N-Terminal Fragment Of Human Tax1 Length = 381

Iteration: 1
 Score = 48.1 bits (113), Expect = 6e-06,   Method: Compositional matrix adjust.
 Identities = 47/183 (25%), Positives = 65/183 (35%), Gaps = 53/183 (28%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P  TY+ +      G  V+L+C A GNP P I W           R V G          
Sbjct: 213 PAETYALV------GQQVTLECFAFGNPVPRIKW-----------RKVDGSLSPQWTTAE 255
Query: 63  SHVNISHVTVEDGGEYACVAENRAGTCEI------------------TPYDSGPYL---- 100
             + I  V+ ED G Y C AEN  G   +                  T  D G  L    
Sbjct: 256 PTLQIPSVSFEDEGTYECEAENSKGRDTVQGRIIVQAQPEWLKVISDTEADIGSNLRWGC 315
Query: 101 ---------IAWFKDGRQIPGRTS----STSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
                    + W ++G  +  +      +  L  + +  ED G+YQC+A    G +   S
Sbjct: 316 AAAGKPRPTVRWLRNGEPLASQNRVEVLAGDLRFSKLSLEDSGMYQCVAENKHGTI-YAS 374
Query: 148 AEL 150
           AEL
Sbjct: 375 AEL 377

>pdb|2DM3|A Chain A, Solution Structure Of The Second Ig Domain Of Human Palladin Length = 110

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 29/75 (38%), Positives = 36/75 (48%), Gaps = 4/75 (5%)
Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
          T+Q G    + C  SG PTPD+ W LDG   P          V  +G  +  + I  VT 
Sbjct: 20 TVQEGKLCRMDCKVSGLPTPDLSWQLDG--KPVRPDSAHKMLVRENG--VHSLIIEPVTS 75
Query: 73 EDGGEYACVAENRAG 87
           D G Y C+A NRAG
Sbjct: 76 RDAGIYTCIATNRAG 90

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 28/80 (35%), Positives = 37/80 (46%), Gaps = 3/80 (3%)
Query: 8   SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
           S +  T   G +V+L C A G P P + WT DG  +            S   D  S + I
Sbjct: 202 SIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS---DDSSELTI 258
Query: 68  SHVTVEDGGEYACVAENRAG 87
            +V   D  EY C+AEN+AG
Sbjct: 259 RNVDKNDEAEYVCIAENKAG 278

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 34/114 (29%), Positives = 56/114 (49%), Gaps = 22/114 (19%)
Query: 95  DSGPYLIAWFKDG-----------RQIPGRTSSTSLVINPV-----GREDRGIYQCIARR 138
           D G  +I W KDG           +Q+P    + SL+I  +      + D G+YQC A  
Sbjct: 48  DRGVPVIKWKKDGLILALGMDDRKQQLP----NGSLLIQNILHSRHHKPDEGLYQCEASL 103
Query: 139 SD-GDVAQGSAELQLGG-LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
            D G +   +A++ + G L ++     +TA  G+ + +KC V G P+  +HW+K
Sbjct: 104 GDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK 157

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 42/169 (24%), Positives = 65/169 (38%), Gaps = 52/169 (30%)
Query: 13  TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
           T + G  ++  C ASG+P P I W  +G  +  N ++++     G     + + + ++  
Sbjct: 15  TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 67
Query: 73  EDGGEYACVAENRAGTCEI------------------TPYDSGPYL------------IA 102
            DGG Y C A N+AG  E                   T Y++G               I 
Sbjct: 68  SDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNETTYENGQVTLVCDAEGEPIPEIT 127
Query: 103 WFK--------------DGR-QIPGRTSSTSLVINPVGREDRGIYQCIA 136
           W +              DGR ++ G+  S+SL I  V   D G Y C A
Sbjct: 128 WKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEA 176

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 35/139 (25%), Positives = 63/139 (45%), Gaps = 18/139 (12%)
Query: 101 IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
           I+WF++G+ I        + S+T L +  +   D G Y C A    G+  +  A LQ+  
Sbjct: 36  ISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKAGE-DEKQAFLQVFV 94
Query: 155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART--- 211
            P++  +   T  +   +++ C   G PI E+ W++    ++ F F      EG ++   
Sbjct: 95  QPHIIQLKNETTYENGQVTLVCDAEGEPIPEITWKRA---VDGFTF-----TEGDKSLDG 146
Query: 212 RVICGVTHGDPPLTIRWLK 230
           R+     HG   L I+ +K
Sbjct: 147 RIEVKGQHGSSSLHIKDVK 165

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 72/318 (22%), Positives = 105/318 (33%), Gaps = 97/318 (30%)
Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
           G  ++L+C   G P   I W  +  +L +   + + QF +    ++    I+ V   D G
Sbjct: 20  GEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKM-QFKNNVASLV----INKVDHSDVG 74
Query: 77  EYACVAENRAGT------------------------------------CEITPYDSGPYL 100
           EY C AEN  G                                     C I    S P  
Sbjct: 75  EYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRIN--GSEPLQ 132
Query: 101 IAWFKDGRQIPGRTSSTSLVINPVG--------REDRGIYQCIARRSDGDVAQGSAELQL 152
           ++W+KDG  +    +  +  I+ V         +   G Y C A    G  A  SA+L L
Sbjct: 133 VSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSASNPLG-TASSSAKLTL 191
Query: 153 GGL---PYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
                 P+  L P  V    GE  + KC V G    ++ W K   +I         L E 
Sbjct: 192 SEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVEN 251
Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPXXXXXXXXXXXXXXXXXXXAAHSGEYTC 268
             T  +  VT GD                                         +G+YTC
Sbjct: 252 TATLTVLKVTKGD-----------------------------------------AGQYTC 270
Query: 269 VASNTAAQARYSSKLQVK 286
            ASN A +   S++L V+
Sbjct: 271 YASNVAGKDSCSAQLGVQ 288

>pdb|2EDJ|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homolog 2 Length = 100

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 28/87 (32%), Positives = 40/87 (45%), Gaps = 9/87 (10%)
Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGD 60
          PPI+      QTL       LKC A+G+P P I W  +GF  P  + R  I +       
Sbjct: 8  PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQEQ------ 61
Query: 61 VISHVNISHVTVEDGGEYACVAENRAG 87
              + I ++ + D G Y CVA + +G
Sbjct: 62 --GTLQIKNLRISDTGTYTCVATSSSG 86

>pdb|2YD9|A Chain A, Crystal Structure Of The N-Terminal Ig1-3 Module Of Human Receptor Protein Tyrosine Phosphatase Sigma Length = 304

Iteration: 1
 Score = 44.7 bits (104), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 60/239 (25%), Positives = 83/239 (34%), Gaps = 57/239 (23%)
Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP       +Q    G   S  C A+G+P P + W   G ++  + RF   +F    G V
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGAV 64
Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL--- 100
           +    +   T  D   Y CVA+N  G  EIT +                  D GP L   
Sbjct: 65  LRIQPLR--TPRDENVYECVAQNSVG--EITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120
Query: 101 -------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQ 133
                              I WFKD   +    S        S +L I      D+G Y+
Sbjct: 121 ERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYE 180
Query: 134 CIARRSDGDVAQGSAELQL---GGLPYVRLIPKVTAI-DGEGLSIKCPVAGYPIEEVHW 188
           C+A  S G      A L +      P   ++P    I  G  ++I C   G P+  V W
Sbjct: 181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKW 239

>pdb|2YD1|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Drosophila Receptor Protein Tyrosine Phosphatase Dlar Length = 212

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDV 61
           P++T     + ++ G  V + C A GNPTP+I W  +  ++  +N R+ +          
Sbjct: 111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------- 162
Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT 88
              + I +   ED G+Y CVAEN  GT
Sbjct: 163 -GFLQIENSREEDQGKYECVAENSMGT 188

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 43.9 bits (102), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 13  TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
           T + G  ++  C ASG+P P I W  +G  +  N ++++     G     + + + ++  
Sbjct: 205 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 257
Query: 73  EDGGEYACVAENRAGTCEITPY 94
            DGG Y C A N+AG  E   +
Sbjct: 258 SDGGPYVCRATNKAGEDEKQAF 279

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 23/82 (28%), Positives = 40/82 (48%), Gaps = 7/82 (8%)
Query: 13  TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV 72
           T + G  ++  C ASG+P P I W  +G  +  N ++++     G     + + + ++  
Sbjct: 109 TAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYIL----KGSN---TELTVRNIIN 161
Query: 73  EDGGEYACVAENRAGTCEITPY 94
            DGG Y C A N+AG  E   +
Sbjct: 162 SDGGPYVCRATNKAGEDEKQAF 183

>pdb|3PXJ|A Chain A, Tandem Ig Repeats Of Dlar Length = 210

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/87 (31%), Positives = 43/87 (49%), Gaps = 10/87 (11%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDV 61
           P++T     + ++ G  V + C A GNPTP+I W  +  ++  +N R+ +          
Sbjct: 113 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSLKD-------- 164
Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT 88
              + I +   ED G+Y CVAEN  GT
Sbjct: 165 -GFLQIENSREEDQGKYECVAENSMGT 190

>pdb|2YD5|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Human Receptor Protein Tyrosine Phosphatase Lar Length = 214

Iteration: 1
 Score = 43.9 bits (102), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 52/197 (26%), Positives = 71/197 (36%), Gaps = 57/197 (28%)
Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           +QT   G   S  C A+G P P I W   G ++ ++ RF + +F  G G V+    I  +
Sbjct: 15  DQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGSVL---RIQPL 70
Query: 71  TVE-DGGEYACVAENRAGTCEITP----------------YDSGPYL------------- 100
            V+ D   Y C A N  G    +                  D GP L             
Sbjct: 71  RVQRDEAIYECTATNSLGEINTSAKLSVLEEEQLPPGFPSIDMGPQLKVVEKARTATMLC 130
Query: 101 ---------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQCIARRSDGDV 143
                    I+WFKD   +   TS        S +L I      D+G Y+C+A  S G  
Sbjct: 131 AAGGNPDPEISWFKDFLPVDPATSNGRIKQLRSGALQIESSEESDQGKYECVATNSAGTR 190
Query: 144 AQGSAELQLGGLPYVRL 160
               A L      YVR+
Sbjct: 191 YSAPANL------YVRV 201

>pdb|3CAF|A Chain A, Crystal Structure Of Hfgfr2 D2 Domain Length = 100

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 13 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 68
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 69 MESVVPSDKGNYTCVVENEYGSINHT 94

>pdb|1WVZ|A Chain A, Solution Structure Of The D2 Domain Of The Fibroblast Growth Factor Length = 104

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 17 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 72
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 73 MESVVPSDKGNYTCVVENEYGSINHT 98

>pdb|3DAR|A Chain A, Crystal Structure Of D2 Domain From Human Fgfr2 Length = 105

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 18 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 73
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 74 MESVVPSDKGNYTCVVENEYGSINHT 99

>pdb|3OJM|B Chain B, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring P253r Apert Mutation Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10  IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
           +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 24  MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 79
Query: 67  ISHVTVEDGGEYACVAENRAGTCEIT 92
           +  V   D G Y CV EN  G+   T
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHT 105

>pdb|3OJ2|C Chain C, Crystal Structure Of Fgf1 Complexed With The Ectodomain Of Fgfr2b Harboring The A172f Pfeiffer Syndrome Mutation Length = 231

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10  IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
           +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 24  MEKRLHAVPAFNTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 79
Query: 67  ISHVTVEDGGEYACVAENRAGTCEIT 92
           +  V   D G Y CV EN  G+   T
Sbjct: 80  MESVVPSDKGNYTCVVENEYGSINHT 105

>pdb|1II4|E Chain E, Crystal Structure Of Ser252trp Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97

>pdb|1E0O|B Chain B, Crystal Structure Of A Ternary Fgf1-Fgfr2-Heparin Complex Length = 219

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 15 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 70
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 71 MESVVPSDKGNYTCVVENEYGSINHT 96

>pdb|2FDB|P Chain P, Crystal Structure Of Fibroblast Growth Factor (Fgf)8b In Complex With Fgf Receptor (Fgfr) 2c Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 14 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 69
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 70 MESVVPSDKGNYTCVVENEYGSINHT 95

>pdb|1IIL|E Chain E, Crystal Structure Of Pro253arg Apert Mutant Fgf Receptor 2 (Fgfr2) In Complex With Fgf2 Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97

>pdb|1EV2|E Chain E, Crystal Structure Of Fgf2 In Complex With The Extracellular Ligand Binding Domain Of Fgf Receptor 2 (Fgfr2) Length = 220

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/86 (31%), Positives = 38/86 (44%), Gaps = 7/86 (8%)
Query: 10 IEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
          +E+ L   PA   V  +C A GNP P + W  +G E    +R    +  + H  +I    
Sbjct: 16 MEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI---- 71
Query: 67 ISHVTVEDGGEYACVAENRAGTCEIT 92
          +  V   D G Y CV EN  G+   T
Sbjct: 72 MESVVPSDKGNYTCVVENEYGSINHT 97

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 19  AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
           +V  +C A+G P P   W  +G  L T +R  I Q           +NI+ V + D G Y
Sbjct: 312 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMY 362
Query: 79  ACVAENRAG 87
            CVAEN+ G
Sbjct: 363 QCVAENKHG 371

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 62/174 (35%), Gaps = 46/174 (26%)
Query: 15  QPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
           + G  V L+C A GNP P I W   DG  +    R      +         + I +   E
Sbjct: 218 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---------LEIPNFQQE 268
Query: 74  DGGEYACVAENRAGTC----EITPYDSGPYL---------------------------IA 102
           D G Y CVAEN  G      ++T Y    ++                             
Sbjct: 269 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 328
Query: 103 WFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           W K+G  +  R        +L I  V   D G+YQC+A    G V   SAEL +
Sbjct: 329 WLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIFSSAELSV 381

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 25/69 (36%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 19  AVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY 78
           +V  +C A+G P P   W  +G  L T +R  I Q           +NI+ V + D G Y
Sbjct: 311 SVFWECKANGRPKPTYRWLKNGDPLLTRDRIQIEQ---------GTLNITIVNLSDAGMY 361
Query: 79  ACVAENRAG 87
            CVAEN+ G
Sbjct: 362 QCVAENKHG 370

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 46/174 (26%), Positives = 62/174 (35%), Gaps = 46/174 (26%)
Query: 15  QPGPAVSLKCIASGNPTPDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVE 73
           + G  V L+C A GNP P I W   DG  +    R      +         + I +   E
Sbjct: 217 EKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGI---------LEIPNFQQE 267
Query: 74  DGGEYACVAENRAGTC----EITPYDSGPYL---------------------------IA 102
           D G Y CVAEN  G      ++T Y    ++                             
Sbjct: 268 DAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYR 327
Query: 103 WFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           W K+G  +  R        +L I  V   D G+YQC+A    G V   SAEL +
Sbjct: 328 WLKNGDPLLTRDRIQIEQGTLNITIVNLSDAGMYQCVAENKHG-VIFSSAELSV 380

>pdb|1IE5|A Chain A, Nmr Structure Of The Third Immunoglobulin Domain From The Neural Cell Adhesion Molecule Length = 107

Iteration: 1
 Score = 42.7 bits (99), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 27/85 (31%), Positives = 38/85 (44%), Gaps = 4/85 (4%)
Query: 8  SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
          S +  T     +V+L C A G P P + WT DG  +   +      F     ++I    I
Sbjct: 19 STMNATANLSQSVTLACDADGFPEPTMTWTKDGEPIEQEDNEEKYSFNYDGSELI----I 74
Query: 68 SHVTVEDGGEYACVAENRAGTCEIT 92
            V   D  EY C+AEN+AG  + T
Sbjct: 75 KKVDKSDEAEYICIAENKAGEQDAT 99

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 28/86 (32%), Positives = 38/86 (44%), Gaps = 8/86 (9%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P +T   I   +  G    L C   GNP P + W      L  N+R  + +  SG     
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLE--SGS---- 154
Query: 63  SHVNISHVTVEDGGEYACVAENRAGT 88
             + I +V  ED G+Y CVA+N  GT
Sbjct: 155 --LRIHNVQKEDAGQYRCVAKNSLGT 178

>pdb|2YD4|A Chain A, Crystal Structure Of The N-Terminal Ig1-2 Module Of Chicken Receptor Protein Tyrosine Phosphatase Sigma Length = 210

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 48/189 (25%), Positives = 68/189 (35%), Gaps = 53/189 (28%)
Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +PP+     ++Q    G   S  C A+G+P P + W   G ++  + RF   +F    G 
Sbjct: 5   SPPVFIKKPVDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKV-NSQRFETIEFDESAGA 63
Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPY------------------DSGPYL-- 100
           V+    +   T  D   Y CVA+N  G  E+T +                  D GP L  
Sbjct: 64  VLRIQPLR--TPRDENIYECVAQNPHG--EVTVHAKLTVLREDQLPPGFPNIDMGPQLKV 119
Query: 101 --------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIY 132
                               I WFKD   +   TS        S  L I      D+G Y
Sbjct: 120 VERTRTATMLCAASGNPDPEITWFKDFLPVDPSTSNGRIKQLRSGGLQIESSEETDQGKY 179
Query: 133 QCIARRSDG 141
           +C+A  S G
Sbjct: 180 ECVASNSAG 188

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/78 (33%), Positives = 36/78 (46%), Gaps = 7/78 (8%)
Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHV 70
           + ++ G   ++ C A GNP P+I W  D   + P  +   I Q  SG       + I   
Sbjct: 119 KVVEKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSG------ALQIESS 172
Query: 71  TVEDGGEYACVAENRAGT 88
              D G+Y CVA N AGT
Sbjct: 173 EESDQGKYECVATNSAGT 190

>pdb|3PXH|A Chain A, Tandem Ig Domains Of Tyrosine Phosphatase Lar Length = 201

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 53/206 (25%), Positives = 73/206 (35%), Gaps = 57/206 (27%)
Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           + P+      +QT   G   S  C A+G P P I W   G ++ ++ RF + +F  G G 
Sbjct: 6   SKPVFVKVPEDQTGLSGGVASFVCQATGEPKPRITWMKKGKKV-SSQRFEVIEFDDGAGS 64
Query: 61  VISHVNISHVTVE-DGGEYACVAENRAGTCEITP----------------YDSGPYL--- 100
           V+    I  + V+ D   Y C A N  G    +                  D GP L   
Sbjct: 65  VL---RIQPLRVQRDEAIYECTATNSLGEINTSAKLSVLEEDQLPSGFPTIDMGPQLKVV 121
Query: 101 -------------------IAWFKDGRQIP-----GRTS---STSLVINPVGREDRGIYQ 133
                              I+WFKD   +      GR     S +L I      D+G Y+
Sbjct: 122 EKGRTATMLCAAGGNPDPEISWFKDFLPVDPAASNGRIKQLRSGALQIESSEESDQGKYE 181
Query: 134 CIARRSDGDVAQGSAELQLGGLPYVR 159
           C+A  S G      A L      YVR
Sbjct: 182 CVATNSAGTRYSAPANL------YVR 201

>pdb|2EO9|A Chain A, Solution Structure Of The Fifth Ig-Like Domain From Human Roundabout Homo1 Length = 118

Iteration: 1
 Score = 42.4 bits (98), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 42/93 (45%), Gaps = 7/93 (7%)
Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          PP++    + QT+       L C+A+G+P P I W  DG  + T +   I Q  +G    
Sbjct: 8  PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSR-IKQLENG---- 62
Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
             + I +  + D G Y C+A   +G    + Y
Sbjct: 63 --VLQIRYAKLGDTGRYTCIASTPSGEATWSAY 93

>pdb|2JLL|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3ii Length = 389

Iteration: 1
 Score = 42.0 bits (97), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVN 66
          E T + G  V+L C A G P P+I W   +DGF     ++ + G+  V G HG   S ++
Sbjct: 10 ETTYENG-QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLH 66
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPY 94
          I  V + D G Y C A +R G  + + Y
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMY 94

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 27/71 (38%), Positives = 34/71 (47%), Gaps = 9/71 (12%)
Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
           G  V+L+C A GNP PDI W      +P+         +S  G V+   NI    +ED G
Sbjct: 128 GQNVTLECFALGNPVPDIRWRKVLEPMPSTAE------ISTSGAVLKIFNIQ---LEDEG 178
Query: 77  EYACVAENRAG 87
            Y C AEN  G
Sbjct: 179 IYECEAENIRG 189

>pdb|3GRW|A Chain A, Fgfr3 In Complex With A Fab Length = 241

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
           V  +C A+GNPTP I W  +G E    +R  IG     H      + +  V   D G Y 
Sbjct: 33  VRFRCPAAGNPTPSISWLKNGREFRGEHR--IGGIKLRHQQW--SLVMESVVPSDRGNYT 88
Query: 80  CVAENRAGTCEIT 92
           CV EN+ G+   T
Sbjct: 89  CVVENKFGSIRQT 101

>pdb|2XYC|A Chain A, Crystal Structure Of Ncam2 Igiv-Fn3i Length = 291

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 45/88 (51%), Gaps = 7/88 (7%)
Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGW--TLDGFELPTNNRFVIGQF-VSG-HGDVISHVN 66
          E T + G  V+L C A G P P+I W   +DGF     ++ + G+  V G HG   S ++
Sbjct: 10 ETTYENG-QVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGS--SSLH 66
Query: 67 ISHVTVEDGGEYACVAENRAGTCEITPY 94
          I  V + D G Y C A +R G  + + Y
Sbjct: 67 IKDVKLSDSGRYDCEAASRIGGHQKSMY 94

>pdb|2VRA|A Chain A, Drosophila Robo Ig1-2 (Monoclinic Form) Length = 208

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGEYA 79
          +L C   G P P I W  DG  + TN +     QF  G   +  +  +     +DGGEY 
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA--LFFYRTMQGKKEQDGGEYW 85
Query: 80 CVAENRAG 87
          CVA+NR G
Sbjct: 86 CVAKNRVG 93

>pdb|2VR9|A Chain A, Drosophila Robo Ig1-2 (Tetragonal Form) Length = 217

Iteration: 1
 Score = 42.0 bits (97), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 25/68 (36%), Positives = 33/68 (48%), Gaps = 3/68 (4%)
Query: 21 SLKCIASGNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGGEYA 79
          +L C   G P P I W  DG  + TN +     QF  G   +  +  +     +DGGEY 
Sbjct: 28 TLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFKDGA--LFFYRTMQGKKEQDGGEYW 85
Query: 80 CVAENRAG 87
          CVA+NR G
Sbjct: 86 CVAKNRVG 93

>pdb|2KDG|A Chain A, Solution Structure Of The 1st Ig Domain Of Myotilin Length = 100

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 25/81 (30%), Positives = 37/81 (45%), Gaps = 4/81 (4%)
Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           ++  G    +    SG P PD+ W L+G  + +++   +     G   +I  V    V 
Sbjct: 15 MSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEV----VR 70
Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D G YACVA+NRAG    T
Sbjct: 71 ASDAGAYACVAKNRAGEATFT 91

>pdb|1RY7|B Chain B, Crystal Structure Of The 3 Ig Form Of Fgfr3c In Complex With Fgf1 Length = 334

Iteration: 1
 Score = 41.6 bits (96), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 26/73 (35%), Positives = 34/73 (46%), Gaps = 4/73 (5%)
Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
           V  +C A+GNPTP I W  +G E    +R  IG     H      + +  V   D G Y 
Sbjct: 141 VRFRCPAAGNPTPSISWLKNGREFRGEHR--IGGIKLRHQQW--SLVMESVVPSDRGNYT 196
Query: 80  CVAENRAGTCEIT 92
           CV EN+ G+   T
Sbjct: 197 CVVENKFGSIRQT 209

>pdb|3KVQ|A Chain A, Crystal Structure Of Vegfr2 Extracellular Domain D7 Length = 108

Iteration: 1
 Score = 41.6 bits (96), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
          P +T +   QT   G ++ + C ASGNP P I W  D   L  ++  V+        D  
Sbjct: 11 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KDGN 63
Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
           ++ I  V  ED G Y C A +  G  ++  +
Sbjct: 64 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 95

>pdb|3V2A|R Chain R, Vegfr-2VEGF-A Complex Structure Length = 772

Iteration: 1
 Score = 41.2 bits (95), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 27/92 (29%), Positives = 41/92 (44%), Gaps = 7/92 (7%)
Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
           P +T +   QT   G ++ + C ASGNP P I W  D   L  ++  V+        D  
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KDGN 719
Query: 63  SHVNISHVTVEDGGEYACVAENRAGTCEITPY 94
            ++ I  V  ED G Y C A +  G  ++  +
Sbjct: 720 RNLTIRRVRKEDEGLYTCQACSVLGCAKVEAF 751

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	286
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-64
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	6e-45
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-35
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	7e-34
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-33
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-26
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	8e-21
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	4e-19
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-09
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-49
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-30
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	1e-09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-48
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	6e-46
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-44
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	3e-38
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	5e-46
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-37
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-43
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-31
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	5e-28
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	6e-16
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	3e-15
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-42
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	9e-42
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	3e-32
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	1e-31
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-30
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	2e-05
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	1e-41
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	4e-19
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	8e-41
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	2e-20
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	5e-13
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	1e-40
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	6e-21
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-40
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-34
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-33
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-16
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	6e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	4e-07
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	4e-39
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-18
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-14
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-37
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	6e-37
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	1e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-34
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	7e-18
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	8e-14
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-13
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-36
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	4e-32
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	7e-28
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	2e-17
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-15
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-36
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	4e-31
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-30
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-36
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	8e-21
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	8e-36
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	6e-35
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	4e-12
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	4e-34
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	1e-31
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	2e-33
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-27
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	4e-25
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	5e-08
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	5e-33
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	3e-31
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	7e-13
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-30
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-18
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	7e-30
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	2e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-29
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	4e-20
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	7e-15
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	4e-29
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	1e-21
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-12
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	3e-10
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	4e-28
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	7e-19
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	3e-15
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	7e-28
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-22
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	1e-13
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-27
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	5e-25
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	8e-18
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	1e-14
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	1e-27
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-16
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-27
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	5e-12
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	3e-27
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-26
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	2e-12
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-26
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	7e-16
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	3e-11
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	4e-11
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	4e-26
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-19
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-22
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	9e-16
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	4e-13
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-25
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	1e-13
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-25
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	1e-09
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	5e-13
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	1e-10
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	3e-25
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	4e-25
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	7e-14
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	1e-24
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	2e-24
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-22
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-11
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	3e-24
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-14
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	7e-11
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-24
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	5e-17
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	8e-12
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	3e-05
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	5e-24
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	1e-23
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-17
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	4e-15
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	6e-23
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	2e-20
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-10
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-22
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	2e-13
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	9e-12
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	2e-22
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	8e-11
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-09
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-22
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	2e-18
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-11
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-22
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	7e-12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	1e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	6e-22
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-08
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	6e-22
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	9e-20
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	4e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-22
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	8e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-21
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	1e-04
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-21
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-20
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	1e-15
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-13
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	3e-21
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-09
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	1e-05
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	2e-20
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	3e-17
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	4e-08
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	9e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-19
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	8e-09
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-07
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	2e-19
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	4e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	8e-19
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-16
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-11
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-19
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-13
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	5e-08
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	7e-19
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	8e-17
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-05
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	1e-18
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	2e-15
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-07
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-18
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-15
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	1e-18
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	3e-08
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-18
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	3e-11
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	2e-18
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-17
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	8e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	2e-18
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	1e-15
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	5e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-18
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	3e-17
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	6e-08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	1e-04
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-18
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-14
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-12
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	1e-17
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	3e-05
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-17
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	3e-15
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-17
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	2e-13
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	3e-09
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	3e-17
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	1e-15
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-07
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-17
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	2e-15
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	4e-17
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-13
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-07
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	5e-17
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	7e-12
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	1e-06
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	4e-06
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	8e-17
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	3e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-16
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	3e-14
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	6e-06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-16
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	1e-10
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	7e-05
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	2e-16
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	4e-14
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-16
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	4e-12
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	9e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	2e-16
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	3e-14
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	3e-16
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	2e-13
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	6e-16
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-15
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	7e-16
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	1e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	1e-15
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	4e-12
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-08
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	1e-15
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-12
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	7e-05
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	1e-15
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	4e-14
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-15
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	4e-13
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	1e-07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-15
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	2e-15
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	2e-15
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	9e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	3e-15
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	9e-14
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	6e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	4e-15
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	5e-15
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	3e-14
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-07
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	6e-15
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	4e-14
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	8e-06
1he7_A	126	High affinity nerve growth factor receptor; transf	8e-15
1he7_A	126	High affinity nerve growth factor receptor; transf	1e-11
1he7_A	126	High affinity nerve growth factor receptor; transf	6e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	8e-15
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	4e-13
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	8e-15
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	7e-11
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-06
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	9e-05
2ens_A	96	Advanced glycosylation END product-specific recept	1e-14
2ens_A	96	Advanced glycosylation END product-specific recept	3e-14
2ens_A	96	Advanced glycosylation END product-specific recept	2e-09
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	2e-14
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	8e-08
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-14
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	2e-11
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	1e-06
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	3e-04
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	3e-14
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-09
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	3e-14
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	7e-14
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-05
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	1e-13
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	5e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	2e-13
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	4e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	2e-13
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-12
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	1e-06
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-06
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	3e-13
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-05
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-13
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	7e-12
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	2e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-13
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	9e-11
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-05
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-12
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	4e-09
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	1e-12
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	5e-11
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-12
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	2e-10
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	3e-05
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	9e-12
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-10
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-05
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-11
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-10
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	4e-05
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-11
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	1e-07
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	2e-11
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	1e-04
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-11
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	1e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-11
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	5e-09
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	2e-05
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	2e-11
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	8e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	2e-11
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	4e-10
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	7e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	3e-11
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	6e-06
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	3e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-11
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	4e-05
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	3e-11
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	1e-07
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	3e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-11
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	5e-05
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	5e-11
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-05
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	6e-11
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	2e-08
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-04
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	1e-04
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	5e-10
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	1e-04
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	1e-10
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-10
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	1e-09
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	2e-05
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-10
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	5e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-10
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	1e-09
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	5e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-10
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-10
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-09
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	9e-07
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	4e-10
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	1e-05
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-10
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	3e-09
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-05
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	9e-10
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	1e-08
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	5e-06
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	3e-09
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	9e-07
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	3e-09
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	5e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	2e-08
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-04
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	3e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	9e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	3e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-08
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	2e-07
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	1e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	3e-07
1n26_A	325	IL-6 receptor alpha chain; transmembrane, glycopro	5e-06
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	3e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	3e-07
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	2e-05
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	1e-04
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-07
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	3e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	8e-07
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	6e-04
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	1e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-06
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	4e-05
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	2e-06
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	4e-06
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	5e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	6e-06
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	4e-04
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	9e-06
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	3e-04
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	1e-05
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	1e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	1e-05
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	8e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-05
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	2e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	5e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	2e-05
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	1e-04
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	4e-05
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	4e-05
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	1e-04
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	3e-04
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	4e-04
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	4e-04
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	5e-04
1xiw_A	105	T-cell surface glycoprotein CD3 epsilon chain; CD3	7e-04
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	8e-04
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	8e-04

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  213 bits (544), Expect = 7e-64
 Identities = 97/321 (30%), Positives = 151/321 (47%), Gaps = 73/321 (22%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP++  +F E+T++PGP+V LKC+A GNPTP+I W LDG ++  N+R+ +GQ+V+ +GDV
Sbjct: 429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDV 488

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PYDSGP--------------- 98
           +S++NI+ V   DGG Y C+A+++ G  E +        PY                   
Sbjct: 489 VSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTC 548

Query: 99  -------YLIAWFKDGRQIP-----GRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQ 145
                    I W +D R +P         + +L+I  V R  D+  Y C+A+  +G  A+
Sbjct: 549 PVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSAR 608

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           GS E+Q+                                      V P+I  FAF     
Sbjct: 609 GSLEVQV-------------------------------------MVLPRIIPFAFEEGPA 631

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G    + C V  GD PL I W  DG+ +S    +  S +    S+L+I +V A+H+G 
Sbjct: 632 QVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGN 691

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           +TC A N A   ++++ L V 
Sbjct: 692 FTCHARNLAGHQQFTTPLNVY 712

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  160 bits (407), Expect = 6e-45
 Identities = 76/324 (23%), Positives = 107/324 (33%), Gaps = 85/324 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +    F  +T      ++L C A G P P   W             V+   V      
Sbjct: 248 KVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT 307

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PY----------DSG------ 97
           +    I    VED G+Y CV  N  G   +                     D G      
Sbjct: 308 LI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 364

Query: 98  -------PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
                     ++W KDG+ I    S + L I  V +ED+G+YQC  R      A+ SAEL
Sbjct: 365 CQYTGNPIKTVSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAEL 421

Query: 151 QLGGL---PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
           +LGG    P +R   +  T   G  + +KC                              
Sbjct: 422 KLGGRFDPPVIRQAFQEETMEPGPSVFLKCVA---------------------------- 453

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 262
                        G+P   I W  DGK ++     +    V+      S L+I SV A  
Sbjct: 454 ------------GGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHAND 501

Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
            G Y C+A +    A +S+KL V 
Sbjct: 502 GGLYKCIAKSKVGVAEHSAKLNVY 525

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  134 bits (338), Expect = 2e-35
 Identities = 75/335 (22%), Positives = 105/335 (31%), Gaps = 109/335 (32%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P         QT+  G      C  +GNP   + W  DG  +  +   +          
Sbjct: 342 APLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSESVLR--------- 392

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE------ITPYDSGPYL-------------- 100
                 I  V  ED G Y C   N   + E      +      P +              
Sbjct: 393 ------IESVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPS 446

Query: 101 --------------IAWFKDGRQIPG-------------RTSSTSLVINPVGREDRGIYQ 133
                         I+W  DG++I                   + L I  V   D G+Y+
Sbjct: 447 VFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYK 506

Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
           CIA+   G VA+ SA+L + GLPY+R + K   + GE L + CPVA              
Sbjct: 507 CIAKSKVG-VAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVA-------------- 551

Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
                                     G P  +I W +D + L       V    +    L
Sbjct: 552 --------------------------GYPIDSIVWERDNRALPINRKQKVFPNGT----L 581

Query: 254 SINSVSAAH-SGEYTCVASNTAAQ-ARYSSKLQVK 286
            I +V        YTCVA N     AR S ++QV 
Sbjct: 582 IIENVERNSDQATYTCVAKNQEGYSARGSLEVQVM 616

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  129 bits (325), Expect = 7e-34
 Identities = 53/320 (16%), Positives = 84/320 (26%), Gaps = 98/320 (30%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           + +  G  + + C  +G P   I W  D   LP N +  +      +G +I    I +V 
Sbjct: 536 KAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKV----FPNGTLI----IENVE 587

Query: 72  V-EDGGEYACVAENRAG-----------------------------------TCEITPYD 95
              D   Y CVA+N+ G                                    C +   D
Sbjct: 588 RNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGD 647

Query: 96  SGPYLIAWFKDGRQIPGR---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 146
             P  I W  DG+ I               + L I  V     G + C A R+     Q 
Sbjct: 648 L-PLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHA-RNLAGHQQF 705

Query: 147 SAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           +  L +   P   L P       G    ++C                             
Sbjct: 706 TTPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD-------------------------- 739

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--SSLLSINSVSAAHS 263
                         G P   + W K        +       +       L ++++   + 
Sbjct: 740 --------------GFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNE 785

Query: 264 GEYTCVASNTAAQARYSSKL 283
           G Y C A N       +  +
Sbjct: 786 GYYLCEAINGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  128 bits (323), Expect = 1e-33
 Identities = 60/333 (18%), Positives = 90/333 (27%), Gaps = 78/333 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  L                ++C ASGNP P+I W         +   +      G   V
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL-V 97

Query: 62  ISHVNISHVTVE-DGGEYACVAENRAGT-------------------------------- 88
                      E     YAC+A N+ G+                                
Sbjct: 98  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 157

Query: 89  --CEITPYDSGP-YLIAWFKDGRQIPGR----------TSSTSLVINPVGRED-RGIYQC 134
             C I  + +    +++W  D  +                S  L I  VG ED    YQC
Sbjct: 158 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 217

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
             +       + SA                                  I E     VP  
Sbjct: 218 RTKHRLTGETRLSATKGR----------------------------LVITEPISSAVPKV 249

Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLL 253
           +    F        +   ++C    G P    RW K  +  + +  V ++D +   S  L
Sbjct: 250 VSLAKFDMKTYSGSSTMALLCPAQ-GYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            I       SG+Y CV +N+       + L V 
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 341

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  106 bits (266), Expect = 5e-26
 Identities = 53/342 (15%), Positives = 89/342 (26%), Gaps = 112/342 (32%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
                    ++ +  G +  +KC+      +    + W  D  E         G+++   
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLP 197

Query: 59  GDVISHVNISHVTVEDG-GEYACVAENRAGTCEIT------------PYDSGPYLIA--- 102
                 ++I  V  EDG   Y C  ++R                      + P +++   
Sbjct: 198 S---GELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAK 254

Query: 103 ---------------------------WFKDGRQIP----------GRTSSTSLVINPVG 125
                                      W+K                 +  S +L+I    
Sbjct: 255 FDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAV 314

Query: 126 REDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID-GEGLSIKCPVAGYPIE 184
            ED G Y C+   S G        L +      ++ P    +D G      C   G    
Sbjct: 315 VEDSGKYLCVVNNSVGG-ESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN--- 370

Query: 185 EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS 244
                                                P  T+ W+KDGK +         
Sbjct: 371 -------------------------------------PIKTVSWMKDGKAIGHS------ 387

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                 S+L I SV     G Y C   N    A  S++L++ 
Sbjct: 388 -----ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKLG 424

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 91.2 bits (226), Expect = 8e-21
 Identities = 38/192 (19%), Positives = 60/192 (31%), Gaps = 48/192 (25%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P I+ ++F E   Q G  ++L C   G   P +I WTLDG  +  +      +       
Sbjct: 619 PRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGITTSRVGRRGSV 678

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT--------------PYD----------- 95
           +     I  V     G + C A N AG  + T              P D           
Sbjct: 679 LT----IEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKV 734

Query: 96  ----SG--PYLIAWFKDGRQIPG-----------RTSSTSLVINPVGREDRGIYQCIARR 138
                G     + W K     PG           R    +L ++ + + + G Y C A  
Sbjct: 735 ECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNIRVEEGTLHVDNIQKTNEGYYLCEA-I 793

Query: 139 SDGDVAQGSAEL 150
           +       +  +
Sbjct: 794 NGIGSGLSAVIM 805

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 86.5 bits (214), Expect = 4e-19
 Identities = 37/266 (13%), Positives = 56/266 (21%), Gaps = 87/266 (32%)

Query: 66  NISHVTVEDGGEYACVAENRAGTCEIT-----PYDSGPYL-------------------- 100
           N+ +  ++    +A VA    G+  +          GP                      
Sbjct: 2   NMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIEC 61

Query: 101 ---------IAWFKDGRQIPG-------RTSSTSLVINPVGREDR------GIYQCIARR 138
                    I W +      G        +S   LV  P   ED        +Y C+AR 
Sbjct: 62  KASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARN 121

Query: 139 SDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES 197
             G +      ++     Y          I G    IKC +  +                
Sbjct: 122 QFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFV--------------- 166

Query: 198 FAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS-LLSIN 256
                                  D    + W  D +                 S  L I 
Sbjct: 167 ----------------------ADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIR 204

Query: 257 SVSAAHS-GEYTCVASNTAAQARYSS 281
            V        Y C   +        S
Sbjct: 205 EVGPEDGYKSYQCRTKHRLTGETRLS 230

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 56.5 bits (136), Expect = 3e-09
 Identities = 17/163 (10%), Positives = 36/163 (22%), Gaps = 47/163 (28%)

Query: 119 LVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLPY--VRLIPKVTAIDGEGLSIK 175
           + +     +   ++  +A  + G      +        P        ++   +  G  I+
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNRIDFSNSTGAEIE 60

Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
           C                                           G+P   I W++     
Sbjct: 61  CKA----------------------------------------SGNPMPEIIWIRSDGTA 80

Query: 236 SPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNTA 274
               P            F    + +     H+  Y C+A N  
Sbjct: 81  VGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLARNQF 123

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  166 bits (423), Expect = 3e-49
 Identities = 68/328 (20%), Positives = 99/328 (30%), Gaps = 77/328 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P I   S  +  + P   + ++C A GNP P   WT +           +       G +
Sbjct: 17  PTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMRRRS-GTL 75

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
           +          E  GEY C A N+ GT                                 
Sbjct: 76  VIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLT 135

Query: 89  --CEITPYDSGPYLIAWFKDGRQIP---GRTSST---SLVINPVGRED-RGIYQCIARRS 139
             C   P      +I W     +      R S      L  + V  +D +  Y C AR  
Sbjct: 136 LQCNP-PPGLPSPVIFWMSSSMEPITQDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFH 194

Query: 140 DGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
                Q      L          KV    G                   E+ P  +    
Sbjct: 195 FTHTIQQKNPFTL----------KVLTTRGVA-----------------ERTPSFMYPQG 227

Query: 200 FPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV 258
                 +  G    + C  + G P   I W K G  L    P + +  ++F+  L I +V
Sbjct: 228 TASSQMVLRGMDLLLECIAS-GVPTPDIAWYKKGGDL----PSDKAKFENFNKALRITNV 282

Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
           S   SGEY C+ASN     R++  ++VK
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVK 310

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  116 bits (292), Expect = 3e-30
 Identities = 61/336 (18%), Positives = 102/336 (30%), Gaps = 102/336 (30%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P     +     +Q G  ++L+C    G P+P I W     E  T ++ V       +GD
Sbjct: 116 PLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVS---QGHNGD 172

Query: 61  VISHVNISHVTVED-GGEYACVAENRAG------------------TCEITPYDSGPYL- 100
           +      S+V ++D   +Y+C A                         E TP    P   
Sbjct: 173 LY----FSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGT 228

Query: 101 -------------------------IAWFKDGRQIPG-----RTSSTSLVINPVGREDRG 130
                                    IAW+K G  +P         + +L I  V  ED G
Sbjct: 229 ASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSG 288

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWE 189
            Y C+A    G +   +  +++   PY    PK +    GE   + C             
Sbjct: 289 EYFCLASNKMGSIRH-TISVRVKAAPYWLDEPKNLILAPGEDGRLVCRA----------- 336

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
                                        +G+P  T++W+ +G+PL    P    ++   
Sbjct: 337 -----------------------------NGNPKPTVQWMVNGEPLQSAPPNPNREVAG- 366

Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
              +       +    Y C  SN       ++ + V
Sbjct: 367 -DTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 57.6 bits (139), Expect = 1e-09
 Identities = 20/100 (20%), Positives = 33/100 (33%), Gaps = 5/100 (5%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
             PP I   +     +       + C    G+P  +  W ++ +  +      VS     
Sbjct: 14  TQPPTITKQSAKDHIVDPRDNILIECEAK-GNPAPSFHWTRNSRFFNIAKDPRVSMRRRS 72

Query: 250 SSLLS---INSVSAAHSGEYTCVASNTAAQAR-YSSKLQV 285
            +L+           + GEY C A N    A     +LQV
Sbjct: 73  GTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQV 112

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  168 bits (428), Expect = 1e-48
 Identities = 63/327 (19%), Positives = 99/327 (30%), Gaps = 88/327 (26%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            PP      +   L  G + + KC  +G     I W  D  E+     + +    +    
Sbjct: 196 VPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTA-- 253

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT--------PY-----------DSG---- 97
               + +  VT  D G+Y C A N AG    +        P                   
Sbjct: 254 ---TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTR 310

Query: 98  ---------PYLIAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
                       + W+KD  +I            S   L +  +  ED G Y C A  + 
Sbjct: 311 YECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAA 370

Query: 141 GDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
           G  A  S  L++   P  R  P  V  + G  + ++C +                     
Sbjct: 371 GS-ASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL--------------------- 408

Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
                               G PP  + W KD + L       +   ++F + + I +V 
Sbjct: 409 -------------------QGTPPFQVSWHKDKRELRSGKKYKIMS-ENFLTSIHILNVD 448

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
           +A  GEY C ASN          + +K
Sbjct: 449 SADIGEYQCKASNDVGSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  161 bits (409), Expect = 6e-46
 Identities = 63/330 (19%), Positives = 102/330 (30%), Gaps = 91/330 (27%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            PP       +     G  V+ +C  +G+    + W  DG  L  +         +    
Sbjct: 100 LPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVA-- 157

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE------ITPYDSGPYL-------------- 100
               + I        G+Y C A N  GT        ++ ++  P+               
Sbjct: 158 ---TLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGES 214

Query: 101 --------------IAWFKDGRQIPGR--------TSSTSLVINPVGREDRGIYQCIARR 138
                         I W KD R+I            ++ +L +  V + D G Y C A  
Sbjct: 215 GTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASN 274

Query: 139 SDGDVAQGSAELQLGGLPYV--RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
             G     SA+L +   P    +L P       E    +C + G P              
Sbjct: 275 VAGK-DSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSP-------------- 319

Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
                                      + + W KD   +       +S ++S +  L + 
Sbjct: 320 --------------------------EIKVLWYKDETEIQESSKFRMSFVESVAV-LEMY 352

Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           ++S   SG+YTC A N A  A  S+ L+VK
Sbjct: 353 NLSVEDSGDYTCEAHNAAGSASSSTSLKVK 382

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  158 bits (400), Expect = 1e-44
 Identities = 71/333 (21%), Positives = 108/333 (32%), Gaps = 97/333 (29%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP             G  ++L+C   G P   I W  +  +L +   + +    +    V
Sbjct: 5   PPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLV 64

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
                I+ V   D GEY C AEN  G                                  
Sbjct: 65  -----INKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPV 119

Query: 89  ---CEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIAR 137
              C I   +  P  ++W+KDG  +    +          +L I    +   G Y C A 
Sbjct: 120 AFECRINGSE--PLQVSWYKDGELLKDDANLQTSFIHNVATLQILQTDQSHVGQYNCSAS 177

Query: 138 RSDGDVAQGSAELQLGGL---PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
              G  A  SA+L L      P+  L P  V    GE  + KC V G             
Sbjct: 178 NPLGT-ASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGT------------ 224

Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
                                        P+ I W KD + + P     ++ L   ++ L
Sbjct: 225 ----------------------------APIKITWAKDNREIRPGGNYKMT-LVENTATL 255

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           ++  V+   +G+YTC ASN A +   S++L V+
Sbjct: 256 TVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 288

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  140 bits (355), Expect = 3e-38
 Identities = 57/325 (17%), Positives = 103/325 (31%), Gaps = 86/325 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  +      + ++       +C   G+P   + W  D  E+  +++F +  FV     +
Sbjct: 291 PRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRM-SFVESVAVL 349

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----TCEIT----------PYD------------ 95
                + +++VED G+Y C A N AG    +  +           P+             
Sbjct: 350 E----MYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLE 405

Query: 96  ---SG--PYLIAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGD 142
               G  P+ ++W KD R++    +         TS+ I  V   D G YQC A    G 
Sbjct: 406 CELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG- 464

Query: 143 VAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
                  + L   P        ++ + GE + ++  + G                     
Sbjct: 465 SDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEG--------------------- 503

Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
                                P+++ W KD   +               + L  +    A
Sbjct: 504 -------------------AEPISVAWFKDKGEIVRESDNIWISYSENIATLQFSRAEPA 544

Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
           ++G+YTC   N A      + L V 
Sbjct: 545 NAGKYTCQIKNEAGTQECFATLSVL 569

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  158 bits (401), Expect = 5e-46
 Identities = 60/331 (18%), Positives = 93/331 (28%), Gaps = 87/331 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
                    +     G  V L C A  +   P I W  DG  L         Q +     
Sbjct: 21  SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRK-QQLPNGSL 79

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
           +I ++  S     D G Y C A                                      
Sbjct: 80  LIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTV 139

Query: 88  --TCEIT--PYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCI 135
              CE+   P  +    I W K+ + +      +        +L I+ +   D G+Y+C 
Sbjct: 140 LLKCEVIGDPMPT----IHWQKNQQDLNPIPGDSRVVVLPSGALQISRLQPGDSGVYRCS 195

Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
           AR          AE+++   P +                                  P  
Sbjct: 196 ARNPASTRTGNEAEVRILSDPGLHRQLYFL-------------------------QRPSN 230

Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 255
                      EG    + C V+ G PP +  WL+  + +  R            S L I
Sbjct: 231 VI-------AIEGKDAVLECCVS-GYPPPSFTWLRGEEVIQLRSKKYSLL---GGSNLLI 279

Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           ++V+   SG YTCV +        S++L V 
Sbjct: 280 SNVTDDDSGTYTCVVTYKNENISASAELTVL 310

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  134 bits (340), Expect = 4e-37
 Identities = 73/334 (21%), Positives = 107/334 (32%), Gaps = 101/334 (30%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL---PTNNRFVIGQFVSG 57
            P          T   G  V LKC   G+P P I W  +  +L   P ++R V+    SG
Sbjct: 120 GPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV--LPSG 177

Query: 58  HGDVISHVNISHVTVEDGGEYACVAENRAGTCE---------------------ITPYD- 95
                  + IS +   D G Y C A N A T                         P + 
Sbjct: 178 A------LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNV 231

Query: 96  --------------SG--PYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQ 133
                         SG  P    W +    I  R         ++L+I+ V  +D G Y 
Sbjct: 232 IAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYT 291

Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
           C+    + ++   SAEL +   P+    P  + A +   +  +C V              
Sbjct: 292 CVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAV-------------- 336

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
                                      G P  T+ W+K+G  + P     +       S 
Sbjct: 337 --------------------------SGKPVPTVNWMKNGDVVIPSDYFQIVG----GSN 366

Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           L I  V  +  G Y CVA N A  A+ S++L V 
Sbjct: 367 LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  156 bits (395), Expect = 2e-43
 Identities = 50/333 (15%), Positives = 90/333 (27%), Gaps = 56/333 (16%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-----NRFVIGQFVS 56
             ++        L  G  + L C A       I +  +            NR +  Q  S
Sbjct: 224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 283

Query: 57  GHGDVISHVNISHVTVEDGGEYACVAENRAG----TCEITPYDSG--------------- 97
                +S + I  VT  D G Y C A +       +  +  ++                 
Sbjct: 284 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEAT 343

Query: 98  ---------------PYLIAWFKDGRQIPGR---TSSTSLVINPVGREDRGIYQCIARRS 139
                          P  I W+K+G  +       +   L I  V   D G Y  I    
Sbjct: 344 VGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVLTIMEVSERDTGNYTVILTNP 403

Query: 140 DGDVAQ-GSAELQLGGLPYVR----LIPKVTAIDGEGLSIKCPVAGYPI-EEVHWEKVPP 193
                Q     L +   P +     + P  +   G   ++ C V   P    +HW     
Sbjct: 404 ISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE 463

Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
           +  +         E ++   +      +   ++   + G  +               ++ 
Sbjct: 464 EECA--------NEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVS 515

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           ++   +A  S  Y C A N   +        V 
Sbjct: 516 TLVIQAANVSALYKCEAVNKVGRGERVISFHVT 548

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  122 bits (307), Expect = 1e-31
 Identities = 51/341 (14%), Positives = 88/341 (25%), Gaps = 100/341 (29%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P L+      T++    + + C   G    D  W     +  +  R  + +   G   
Sbjct: 30  DLPRLSIQKDILTIKANTTLQITC--RGQRDLD--WLWPNNQSGSEQRVEVTECSDGLF- 84

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
               + I  V   D G Y C                                        
Sbjct: 85  -CKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKN 143

Query: 88  -----TCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIAR 137
                 C  +  +    L A + + R +P        S     I        G+  C A+
Sbjct: 144 KTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAK 203

Query: 138 RSDGDVAQGSAELQLG---GLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
            +D    Q    + +     +  V L P   +    GE L + C         + +    
Sbjct: 204 INDE-SYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDF---- 258

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-------VSD 245
                                              W         +  VN        S+
Sbjct: 259 ----------------------------------NWEYPSSKHQHKKLVNRDLKTQSGSE 284

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +  F S L+I+ V+ +  G YTC AS+     + S+ ++V 
Sbjct: 285 MKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVH 325

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score =  112 bits (281), Expect = 5e-28
 Identities = 57/381 (14%), Positives = 87/381 (22%), Gaps = 142/381 (37%)

Query: 2   PPILTYSFIE--QTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVI------- 51
           P I   S I    + Q G   +L C     P P  I W     E   N            
Sbjct: 421 PQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPY 480

Query: 52  ---------------------GQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG--- 87
                                 QF    G   +   +          Y C A N+ G   
Sbjct: 481 PCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGE 540

Query: 88  -----------------------------TCEITPYDSGPYLIAWFKDGRQI-------- 110
                                         C           + W+K G Q         
Sbjct: 541 RVISFHVTRGPEITLQPDMQPTEQESVSLWCTADRST--FENLTWYKLGPQPLPIHVGEL 598

Query: 111 --------------------PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
                                       + +     +D+G Y C+A+       +     
Sbjct: 599 PTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTK-KRHCVVR 657

Query: 151 QL----GGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           QL       P +    +  T   GE + + C  +                          
Sbjct: 658 QLTVLERVAPTITGNLENQTTSIGESIEVSCTAS-------------------------- 691

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
                         G+PP  I W KD + L     + + D    +  L+I  V     G 
Sbjct: 692 --------------GNPPPQIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKEDEGL 734

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTC A +    A+  +   ++
Sbjct: 735 YTCQACSVLGCAKVEAFFIIE 755

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 76.7 bits (188), Expect = 6e-16
 Identities = 33/260 (12%), Positives = 59/260 (22%), Gaps = 82/260 (31%)

Query: 67  ISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL------------------------IA 102
           +    +     + CV    A     +     P L                        + 
Sbjct: 1   MQSKVLLAVALWLCVETRAASVGLPSVSLDLPRLSIQKDILTIKANTTLQITCRGQRDLD 60

Query: 103 WFKDGRQIP-----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA-----QG 146
           W     Q                   +L I  V   D G Y+C  R +D         Q 
Sbjct: 61  WLWPNNQSGSEQRVEVTECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQD 120

Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
                +  +     +  +T    + + I C  +   +      + P              
Sbjct: 121 YRSPFIASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYP-------------- 166

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
                               R++ DG  +S          DS     +I S   +++G  
Sbjct: 167 ------------------EKRFVPDGNRIS---------WDS-KKGFTIPSYMISYAGMV 198

Query: 267 TCVASNTAAQARYSSKLQVK 286
            C A       +    + V 
Sbjct: 199 FCEAKINDESYQSIMYIVVV 218

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 74.4 bits (182), Expect = 3e-15
 Identities = 27/90 (30%), Positives = 39/90 (43%), Gaps = 7/90 (7%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P +T +   QT   G ++ + C ASGNP P I W  D   L  ++  V+        D
Sbjct: 665 VAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVL-------KD 717

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE 90
              ++ I  V  ED G Y C A +  G  +
Sbjct: 718 GNRNLTIRRVRKEDEGLYTCQACSVLGCAK 747

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  151 bits (383), Expect = 5e-42
 Identities = 49/325 (15%), Positives = 89/325 (27%), Gaps = 106/325 (32%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P   T S +  + + G  ++L C A+ NP     W ++G    +     I          
Sbjct: 203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQELFI---------- 252

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT----------------------------- 92
                  ++TV + G Y C A N       T                             
Sbjct: 253 ------PNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDA 306

Query: 93  -----PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDG 141
                  +       W+ + + +P          + +L +  V R D G Y+C  +    
Sbjct: 307 VALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQNELS 366

Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
                   L +                                        P   + +  
Sbjct: 367 VDHSDPVILNV-------------------------------------LYGPDDPTISPS 389

Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
           +     G    + C     +PP    WL DG                 +  L I++++  
Sbjct: 390 YTYYRPGVNLSLSCHAA-SNPPAQYSWLIDGNIQQH------------TQELFISNITEK 436

Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
           +SG YTC A+N+A+    ++   + 
Sbjct: 437 NSGLYTCQANNSASGHSRTTVKTIT 461

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  150 bits (381), Expect = 9e-42
 Identities = 53/325 (16%), Positives = 83/325 (25%), Gaps = 106/325 (32%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P   T S      +PG  +SL C A+ NP     W +DG                     
Sbjct: 381 PDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHT--------------- 425

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPY--------------------------- 94
              + IS++T ++ G Y C A N A     T                             
Sbjct: 426 -QELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDA 484

Query: 95  -------DSGPYLIAWFKDGRQIPGRTSST------SLVINPVGREDRGIYQCIARRSDG 141
                  ++      W+ +G+ +P            +L +  V R D   Y C  + S  
Sbjct: 485 VAFTCEPEAQNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLFNVTRNDARAYVCGIQNSVS 544

Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP 201
                   L +                                        P     + P
Sbjct: 545 ANRSDPVTLDV-------------------------------------LYGPDTPIISPP 567

Query: 202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
                 GA   + C     +P     W  +G P               + +L I  ++  
Sbjct: 568 DSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQ------------QHTQVLFIAKITPN 614

Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
           ++G Y C  SN A     S    + 
Sbjct: 615 NNGTYACFVSNLATGRNNSIVKSIT 639

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  124 bits (312), Expect = 3e-32
 Identities = 45/321 (14%), Positives = 81/321 (25%), Gaps = 98/321 (30%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P     S   + ++   AV+  C           W ++   LP + R    Q  +G+  
Sbjct: 110 LPKPSISSNNSKPVEDKDAVAFTCEPETQD-ATYLWWVNNQSLPVSPRL---QLSNGNRT 165

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
           +     + +VT  D   Y C  +N                                    
Sbjct: 166 LT----LFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENL 221

Query: 89  ---CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
              C        P   +WF +G       S+  L I  +   + G Y C A  SD     
Sbjct: 222 NLSCHAASNP--PAQYSWFVNGTFQQ---STQELFIPNITVNNSGSYTCQAHNSDTG-LN 275

Query: 146 GSAELQL-----GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
            +    +        P++         D + +++ C                        
Sbjct: 276 RTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEI-------------------- 315

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
                                   T  W  + + L     + +S   + +  L++ SV+ 
Sbjct: 316 ---------------------QNTTYLWWVNNQSLPVSPRLQLS---NDNRTLTLLSVTR 351

Query: 261 AHSGEYTCVASNTAAQARYSS 281
              G Y C   N  +      
Sbjct: 352 NDVGPYECGIQNELSVDHSDP 372

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  122 bits (308), Expect = 1e-31
 Identities = 47/319 (14%), Positives = 83/319 (26%), Gaps = 85/319 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P     S     ++   AV+L C      T  + W ++   LP + R  +          
Sbjct: 289 PKPFITSNNSNPVEDEDAVALTCEPEIQNTTYL-WWVNNQSLPVSPRLQLSNDNR----- 342

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPY----DSGPYL----------------- 100
              + +  VT  D G Y C  +N        P       GP                   
Sbjct: 343 --TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLS 400

Query: 101 ------------IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
                        +W  DG        +  L I+ +  ++ G+Y C A  S       + 
Sbjct: 401 LSCHAASNPPAQYSWLIDGNIQQ---HTQELFISNITEKNSGLYTCQANNSASGH-SRTT 456

Query: 149 ELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
                                                +      PK    +     + + 
Sbjct: 457 VKT----------------------------------ITVSAELPKPSISSNNSKPVEDK 482

Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTC 268
                 C         T  W  +G+ L     + +S+ +     L++ +V+   +  Y C
Sbjct: 483 DAVAFTCEP--EAQNTTYLWWVNGQSLPVSPRLQLSNGN---RTLTLFNVTRNDARAYVC 537

Query: 269 VASNTAAQARYSS-KLQVK 286
              N+ +  R     L V 
Sbjct: 538 GIQNSVSANRSDPVTLDVL 556

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  118 bits (298), Expect = 2e-30
 Identities = 44/327 (13%), Positives = 74/327 (22%), Gaps = 110/327 (33%)

Query: 15  QPGPAVSLKCIASGNPTPDIGWTLDGFELPT---------NNRFVIGQFVSGHGDVISHV 65
             G  V L             W                    +   G   SG   +  + 
Sbjct: 12  AEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSGREIIYPNA 71

Query: 66  N--ISHVTVEDGGEYACVAENRAG------------------------------------ 87
           +  I ++   D G Y                                             
Sbjct: 72  SLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSISSNNSKPVEDKDAVAF 131

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDG 141
           TCE     +      W+ + + +P          + +L +  V R D   Y+C  +    
Sbjct: 132 TCEPE---TQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCETQNPVS 188

Query: 142 DVAQGSAELQLGGLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
                S  L +   P    I     +   GE L++ C  A                    
Sbjct: 189 ARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASN------------------ 230

Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
                                 PP    W  +G                 +  L I +++
Sbjct: 231 ----------------------PPAQYSWFVNGTFQQS------------TQELFIPNIT 256

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
             +SG YTC A N+      ++   + 
Sbjct: 257 VNNSGSYTCQAHNSDTGLNRTTVTTIT 283

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 44.6 bits (105), Expect = 2e-05
 Identities = 11/118 (9%), Positives = 31/118 (26%), Gaps = 25/118 (21%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
               +G+ + +        +    W K                         G       
Sbjct: 9   FNVAEGKEVLLLVHNLPQHLFGYSWYK-------------------------GERVDGNR 43

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS 281
             I ++   +  +P    +  ++   ++ L I ++    +G YT     +      ++
Sbjct: 44  QIIGYVIGTQQATPGPAYSGREIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEAT 101

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  144 bits (364), Expect = 1e-41
 Identities = 63/328 (19%), Positives = 101/328 (30%), Gaps = 92/328 (28%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP      +   L  G + + KC  +G     I W  D  E+     + +    +     
Sbjct: 5   PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT---- 60

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE--------------ITPYDSGPYL------- 100
            + + +  VT  D G+Y C A N AG                      S           
Sbjct: 61  -ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRY 119

Query: 101 -----------IAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDG 141
                      + W+KD  +I            S   L +  +  ED G Y C A  + G
Sbjct: 120 ECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEAHNAAG 179

Query: 142 DVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
             A  S  L++   P  R  P  V  + G  + ++C +                      
Sbjct: 180 -SASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECEL---------------------- 216

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSV 258
                              G PP  + W KD + L    ++ +     ++F + + I +V
Sbjct: 217 ------------------QGTPPFQVSWHKDKRELRSGKKYKIMS---ENFLTSIHILNV 255

Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +A  GEY C ASN          + +K
Sbjct: 256 DSADIGEYQCKASNDVGSYTCVGSITLK 283

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 84.0 bits (208), Expect = 4e-19
 Identities = 29/96 (30%), Positives = 46/96 (47%), Gaps = 3/96 (3%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
            PP  +      D L  G      C VT G  P+ I W KD + + P     ++ L   +
Sbjct: 4   APPFFDLKPVSVD-LALGESGTFKCHVT-GTAPIKITWAKDNREIRPGGNYKMT-LVENT 60

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           + L++  V+   +G+YTC ASN A +   S++L V+
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQ 96

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score =  142 bits (359), Expect = 8e-41
 Identities = 65/333 (19%), Positives = 99/333 (29%), Gaps = 96/333 (28%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           PP       +Q    G   S  C A+G+P P + W   G ++ +     I +F    G V
Sbjct: 6   PPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETI-EFDESAGAV 64

Query: 62  ISHVNISHV-TVEDGGEYACVAENRAGT----------CEITPYDSGPYL---------- 100
           +    I  + T  D   Y CVA+N  G            E       P +          
Sbjct: 65  L---RIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVE 121

Query: 101 ------------------IAWFKDGRQIPGRTS--------STSLVINPVGREDRGIYQC 134
                             I WFKD   +    S        S +L I      D+G Y+C
Sbjct: 122 RTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQLRSGALQIESSEETDQGKYEC 181

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
           +A  S G      A L                                   V  + V P+
Sbjct: 182 VATNSAGVRYSSPANL----------------------------------YVRVQNVAPR 207

Query: 195 IESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
                 P    +  G    + C    G P   ++W++  + L+P   + V          
Sbjct: 208 FSI--LPMSHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMPVGR-------N 257

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +       S  YTCVA ++       +++ VK
Sbjct: 258 VLELTDVKDSANYTCVAMSSLGVIEAVAQITVK 290

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 88.3 bits (219), Expect = 2e-20
 Identities = 34/194 (17%), Positives = 57/194 (29%), Gaps = 43/194 (22%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P +      + ++     ++ C ASGNP P+I W  D   +  +            G 
Sbjct: 107 GFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGR-IKQLRSGA 165

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTC-------EITPYDSGPYL------------- 100
           +     I      D G+Y CVA N AG          +   +  P               
Sbjct: 166 LQ----IESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGG 221

Query: 101 ---------------IAWFKDGRQIP--GRTSSTSLVINPVGREDRGIYQCIARRSDGDV 143
                          + W +    +           V+     +D   Y C+A  S   V
Sbjct: 222 NVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLELTDVKDSANYTCVA-MSSLGV 280

Query: 144 AQGSAELQLGGLPY 157
            +  A++ +  LP 
Sbjct: 281 IEAVAQITVKSLPK 294

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 67.2 bits (164), Expect = 5e-13
 Identities = 25/99 (25%), Positives = 41/99 (41%), Gaps = 5/99 (5%)

Query: 190 KVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
           + PP+      P D     G     +C  T GDP   + W K GK ++ +    +   +S
Sbjct: 4   EEPPRFIKE--PKDQIGVSGGVASFVCQAT-GDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 249 FSSLLSINSV-SAAHSGEYTCVASNTAAQARYSSKLQVK 286
             ++L I  + +      Y CVA N+  +    +KL V 
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVL 99

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  141 bits (357), Expect = 1e-40
 Identities = 56/327 (17%), Positives = 99/327 (30%), Gaps = 89/327 (27%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
              +T S  +  L  G +    C A G P     +   G ++ +  R V+         V
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPESIDWYNPQGEKIISTQRVVVQ-----KEGV 58

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE---------------ITPYD----------- 95
            S + I +  +ED G Y C A +  G  +                               
Sbjct: 59  RSRLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEV 118

Query: 96  ----SG--PYLIAWFKDGRQIPGR-------TSSTSLVINPVGREDRGIYQCIARRSDGD 142
               S      ++W     ++           ++ +L I  + + D GIY+C  R     
Sbjct: 119 VCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARG 178

Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
                  +                                   V+   VPP I      F
Sbjct: 179 EIDFRDIIV---------------------------------IVN---VPPAISMPQKSF 202

Query: 203 D-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVS 259
           +     G      C  + G P   I W ++GK +    ++ +  S+     + L++ ++ 
Sbjct: 203 NATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILKGSN-----TELTVRNII 256

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
            +  G Y C A+N A +    + LQV 
Sbjct: 257 NSDGGPYVCRATNKAGEDEKQAFLQVF 283

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 89.1 bits (221), Expect = 6e-21
 Identities = 35/199 (17%), Positives = 59/199 (29%), Gaps = 48/199 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
                     Q  + G    + C  S +P P + W     E+ T +       +  + ++
Sbjct: 98  KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRF--AMLANNNL 155

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG----------TCEITPYDSGPYL----------- 100
                I ++   D G Y C     A              + P  S P             
Sbjct: 156 Q----ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEE 211

Query: 101 --------------IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSD 140
                         I+WF++G+ I        + S+T L +  +   D G Y C A    
Sbjct: 212 MTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTELTVRNIINSDGGPYVCRATNKA 271

Query: 141 GDVAQGSAELQLGGLPYVR 159
           G   +  A LQ+    +  
Sbjct: 272 G-EDEKQAFLQVFVQHHHH 289

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  145 bits (366), Expect = 4e-40
 Identities = 49/337 (14%), Positives = 86/337 (25%), Gaps = 88/337 (26%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
             P+++ S     L+ G   ++ C      +     W  +  +     ++        + 
Sbjct: 210 AVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNY 269

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
           +  + + IS   V D G + C A N  G                                
Sbjct: 270 ERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGE 329

Query: 88  ----TCEITPYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPVGREDRG 130
                 E   +   P    W    R    +                + L +  +   + G
Sbjct: 330 NVDLIVEYEAFPK-PEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGG 388

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV-TAIDGEGLSIKCPVAGYPIEEVHWE 189
            Y  +   SD   A  +  +      YV   P++ T        ++C  AG+P   + W 
Sbjct: 389 TYTFLVSNSDV-NAAIAFNV------YVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWY 441

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
             P   +        LP   +T    G   G                             
Sbjct: 442 FCPGTEQR--CSASVLPVDVQTLNSSGPPFG---------------------------KL 472

Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
               SI+S +  H+G   C A N   +         K
Sbjct: 473 VVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFK 509

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  128 bits (322), Expect = 5e-34
 Identities = 45/345 (13%), Positives = 85/345 (24%), Gaps = 108/345 (31%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHGD 60
           P  L         +      ++C  +     +       G  LP + RF+        G 
Sbjct: 114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD---PKAGI 170

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG--------------------------------- 87
           +I  V  +           C  +                                     
Sbjct: 171 MIKSVKRA----YHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREG 226

Query: 88  -----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS-------------LVINPVGREDR 129
                TC I    S      W ++  Q   +    S             L I+     D 
Sbjct: 227 EEFTVTCTIKDVSS-SVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDS 285

Query: 130 GIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK----VTAIDGEGLSIKCPVAGYPIEE 185
           G++ C A  + G  A  +  L++    ++ + P     V   DGE + +      +P   
Sbjct: 286 GVFMCYANNTFG-SANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFP--- 341

Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 245
                                                P   +W+   +  + ++      
Sbjct: 342 ------------------------------------KPEHQQWIYMNRTFTDKWEDYPKS 365

Query: 246 LD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +     + S L +  +     G YT + SN+   A  +  + V 
Sbjct: 366 ENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score =  126 bits (318), Expect = 2e-33
 Identities = 45/328 (13%), Positives = 85/328 (25%), Gaps = 96/328 (29%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +PP +     +  ++ G  + L C   G       WT +  +    N+            
Sbjct: 35  SPPSIHPGKSDLIVRVGDEIRLLCTDPGFVK----WTFEILDETNENKQ----------- 79

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT------------------------------CE 90
             +          + G+Y C  ++                                  C 
Sbjct: 80  --NEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCP 137

Query: 91  ITPYDSGPYLIAWFK--DGRQIPGRT------SSTSLVINPVGREDRGIYQCIARRSDGD 142
           +T            K   G+ +P          +  ++ +      R    C   +    
Sbjct: 138 LT---DPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKS 194

Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
           V   S +  L   P  + +P V+                                     
Sbjct: 195 VL--SEKFILKVRPAFKAVPVVS------------------------VSKASYL------ 222

Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS----SLLSINSV 258
             L EG    V C +      +   W ++      +   N      F+    + L+I+S 
Sbjct: 223 --LREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISSA 280

Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
               SG + C A+NT   A  ++ L+V 
Sbjct: 281 RVNDSGVFMCYANNTFGSANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 78.6 bits (193), Expect = 1e-16
 Identities = 26/208 (12%), Positives = 44/208 (21%), Gaps = 47/208 (22%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHG 59
              I         +  G  V L       P P+   W                     + 
Sbjct: 312 FINIFPMINTTVFVNDGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNI 371

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGTC------------EITPYDSG---------- 97
             +S ++++ +   +GG Y  +  N                 EI  YD            
Sbjct: 372 RYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAA 431

Query: 98  ---PYLIAWFKDG--------------------RQIPGRTSSTSLVINPVGREDRGIYQC 134
                 I W+                          P         I+    +  G  +C
Sbjct: 432 GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVEC 491

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIP 162
            A    G  +         G    ++ P
Sbjct: 492 KAYNDVGKTSA-YFNFAFKGNNKEQIHP 518

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 73.5 bits (180), Expect = 6e-15
 Identities = 26/246 (10%), Positives = 56/246 (22%), Gaps = 79/246 (32%)

Query: 73  EDGGEYACV----AENRAGTCE------------ITPYDS---------------GPYLI 101
               ++ CV       + G+ +            I P  S                P  +
Sbjct: 5   RGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPGFV 64

Query: 102 AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI 161
            W  +             +       + G Y C  +    +    S  + +     + L+
Sbjct: 65  KWTFEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSN----SIYVFVRDPAKLFLV 120

Query: 162 PK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
            + +   +     ++CP+    +     +              G P     R I      
Sbjct: 121 DRSLYGKEDNDTLVRCPLTDPEVTNYSLKG-----------CQGKPLPKDLRFI------ 163

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
                                     D  + ++  +   A H     C       ++  S
Sbjct: 164 -------------------------PDPKAGIMIKSVKRAYHRLCLHCSVDQ-EGKSVLS 197

Query: 281 SKLQVK 286
            K  +K
Sbjct: 198 EKFILK 203

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 50.1 bits (119), Expect = 4e-07
 Identities = 16/159 (10%), Positives = 37/159 (23%), Gaps = 57/159 (35%)

Query: 125 GREDRGIYQCIAR---RSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAG 180
           G      + C+     R     +Q S        P +      +    G+ + + C   G
Sbjct: 3   GARGAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG 62

Query: 181 YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP 240
                                                        ++W  +    +    
Sbjct: 63  --------------------------------------------FVKWTFEILDETN--- 75

Query: 241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
                 ++  +        A ++G+YTC   +  + + Y
Sbjct: 76  ------ENKQNEWITEKAEATNTGKYTCTNKHGLSNSIY 108

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score =  138 bits (348), Expect = 4e-39
 Identities = 55/333 (16%), Positives = 89/333 (26%), Gaps = 81/333 (24%)

Query: 8   SFIE---QTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVIS 63
            F+E     +     V LKC  +       I W  D  E+  + +      +        
Sbjct: 9   HFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKDGIC------- 61

Query: 64  HVNISHVTVEDGGEYACVAENRAGT----------------------------------- 88
            + I+  + +D G Y  + ++  G                                    
Sbjct: 62  TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQST 121

Query: 89  -------CEITPYDSGPYLIAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQ 133
                    +T Y      + W  +G  I                L IN     D+G Y 
Sbjct: 122 AEGIQLYSFVTYYVEDL-KVNWSHNGSAIRYSDRVKTGVTGEQIWLQINEPTPNDKGKYV 180

Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
                      Q + +L            +                         EK   
Sbjct: 181 MELFDGKT-GHQKTVDLSGQAYDEAYAEFQRLKQAAIA-----------------EKNRA 222

Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLL 253
           ++         + EG    + C V  GDPP  + WLK+ K L+     N+      ++  
Sbjct: 223 RVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYF 281

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +IN VS A SG+Y  V  N          + V 
Sbjct: 282 TINGVSTADSGKYGLVVKNKYGSETSDFTVSVF 314

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 83.0 bits (205), Expect = 2e-18
 Identities = 20/91 (21%), Positives = 40/91 (43%), Gaps = 4/91 (4%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +L       T+Q G A++L C   G+P P++ W  +   L +++   +          
Sbjct: 222 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALASDDHCNL----KFEAGR 277

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            ++  I+ V+  D G+Y  V +N+ G+    
Sbjct: 278 TAYFTINGVSTADSGKYGLVVKNKYGSETSD 308

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 71.1 bits (174), Expect = 2e-14
 Identities = 16/98 (16%), Positives = 28/98 (28%), Gaps = 5/98 (5%)

Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
               P    +      +       + C V +      I W KD + +S        D   
Sbjct: 4   PFTGPHFVEY--LSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVD---EKHDFKD 58

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
               L I   S   +G Y  +  +   + +   KL  +
Sbjct: 59  GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 96

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score =  132 bits (334), Expect = 3e-37
 Identities = 47/327 (14%), Positives = 88/327 (26%), Gaps = 90/327 (27%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P++  S  E  ++PG  V+L+C+++G+      W        T +             
Sbjct: 3   PAPVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLD----------PES 48

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
             S +   + T ++ G Y C                                        
Sbjct: 49  PGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAV 108

Query: 89  --CEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSD 140
             C IT        ++  ++G +   R      +     +I      D   Y C    + 
Sbjct: 109 LPCLITDPALKD-SVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNG 167

Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
            +       L       V  +                              PP+I+    
Sbjct: 168 RESTSTGIWL------KVNRVH---------------------------PEPPQIKLEPS 194

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVS 259
                  G   +++C  T+ +    +   +    L      +   +       LS+N+V 
Sbjct: 195 KLV-RIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVD 253

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
              +G Y+CVASN       +   QV 
Sbjct: 254 FQDAGIYSCVASNDVGTRTATMNFQVV 280

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  136 bits (343), Expect = 6e-37
 Identities = 40/324 (12%), Positives = 75/324 (23%), Gaps = 88/324 (27%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
                Y      +    +++L+ +          W      L     F +          
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPY-------------------DSGPYL-- 100
           +  + I  +T    GEY    ++ A    I                      ++   L  
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161

Query: 101 ---------IAWFKDGRQIP----GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
                    + W     Q         +        +        +C AR   G      
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRL 221

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
             + L   P   L P++    GE L I+C                               
Sbjct: 222 FTIDLNQTPQTTL-PQLFLKVGEPLWIRCKAVH--------------------------- 253

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVSAAH 262
                        +    + W  + K L       +S   +           ++SV+   
Sbjct: 254 ------------VNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARND 301

Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
           +G YTC +S        S+ + + 
Sbjct: 302 TGYYTCSSSK---HPSQSALVTIV 322

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  130 bits (327), Expect = 1e-34
 Identities = 46/315 (14%), Positives = 78/315 (24%), Gaps = 80/315 (25%)

Query: 11  EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV-ISHVNIS 68
           +  L+ G  + ++C A   N    + W L+   L   N F +  + +    + I    +S
Sbjct: 236 QLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVS 295

Query: 69  HVTVEDGGEYACVAENRAGT--------------------------------CEITPYDS 96
            V   D G Y C +                                           Y  
Sbjct: 296 SVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY-- 353

Query: 97  GPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
            P +   W    +  P       +  S+      +   G Y   A   D         L 
Sbjct: 354 -PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA-QFTKMFTLN 411

Query: 152 LGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART 211
                 +R  P+V A +       C   GYP+    W+K   K                 
Sbjct: 412 ------IRRKPQVLA-EASASQASCFSDGYPLPSWTWKKCSDK----------------- 447

Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
                        +    ++          N      + S  ++N   A       C A 
Sbjct: 448 -------------SPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494

Query: 272 NTAAQARYSSKLQVK 286
           N+   +  +  L   
Sbjct: 495 NSLGTSCETILLNSP 509

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score =  128 bits (323), Expect = 4e-34
 Identities = 37/316 (11%), Positives = 62/316 (19%), Gaps = 108/316 (34%)

Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            +L CI+   P P + W L   +  +               +             G +  
Sbjct: 157 DALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHE---------LFGTDIR 207

Query: 80  CVAENRAG--------------------------------TCEITPYDSGPYLIAWFKDG 107
           C A N  G                                 C+    + G   + W  + 
Sbjct: 208 CCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFG-LTWELEN 266

Query: 108 RQIPGRT--------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
           + +                        ++ V R D G Y C + +        SA + + 
Sbjct: 267 KALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQ----SALVTIV 322

Query: 154 GLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
              ++              E          YP                            
Sbjct: 323 EKGFINATNSSEDYEIDQYEEFCFSVRFKAYP---------------------------- 354

Query: 211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA 270
                        +   W    K                   +S         GEY   A
Sbjct: 355 ------------QIRCTWTFSRKSFPCE-----QKGLDNGYSISKFCNHKHQPGEYIFHA 397

Query: 271 SNTAAQARYSSKLQVK 286
            N  AQ      L ++
Sbjct: 398 ENDDAQFTKMFTLNIR 413

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 82.4 bits (203), Expect = 7e-18
 Identities = 21/252 (8%), Positives = 44/252 (17%), Gaps = 80/252 (31%)

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-CEITPY------------------------- 94
           V+ +   +  +V     Y  V+E+     C + P                          
Sbjct: 13  VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72

Query: 95  -DSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQG 146
              G     W      +  +           S+VI  +     G Y    +    +    
Sbjct: 73  DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTI 131

Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
              + +       L            ++ C                              
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISE--------------------------- 164

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
                          P   + W+               +            +      + 
Sbjct: 165 -------------SVPEPIVEWVLCDSQGES-----CKEESPAVVKKEEKVLHELFGTDI 206

Query: 267 TCVASNTAAQAR 278
            C A N   +  
Sbjct: 207 RCCARNELGREC 218

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 70.1 bits (171), Expect = 8e-14
 Identities = 13/170 (7%), Positives = 37/170 (21%), Gaps = 46/170 (27%)

Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
            +   N         Y  ++   +         L+      V     V       ++++ 
Sbjct: 15  INHKNNDSSVGKSSSYPMVSESPEDLGCA----LRPQSSGTVYEAAAVEVDVSASITLQV 70

Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
            V                                             ++  W+     L+
Sbjct: 71  LVDAPG----------------------------------------NISCLWVFKHSSLN 90

Query: 237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +   +    +     + I  ++   +GEY     + A        + ++
Sbjct: 91  CQ--PHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 69.0 bits (168), Expect = 2e-13
 Identities = 21/175 (12%), Positives = 33/175 (18%), Gaps = 51/175 (29%)

Query: 5   LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISH 64
            T S  +  +               P     WT      P   + +              
Sbjct: 329 ATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNG---------YS 379

Query: 65  VNISHVTVEDGGEYACVAENRAGTCE------------ITPYDSGPYL-----------I 101
           ++         GEY   AEN                  +    S                
Sbjct: 380 ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSW 439

Query: 102 AWFKDGRQIPGRTSS-------------------TSLVINPVGREDRGIYQCIAR 137
            W K   + P  T                     +S  +N        + +C A 
Sbjct: 440 TWKKCSDKSPNCTEEITEGVWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAY 494

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  133 bits (336), Expect = 2e-36
 Identities = 40/327 (12%), Positives = 74/327 (22%), Gaps = 94/327 (28%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
                Y      +    +++L+ +          W      L     F +          
Sbjct: 48  SSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRG 101

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG--TCEITPYDSGPYLIA----------------- 102
           +  + I  +T    GEY    ++ A   T   T       L                   
Sbjct: 102 VVSMVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVC 161

Query: 103 -----------WFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
                      W     Q                 V++ +   D    +C AR       
Sbjct: 162 ISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTD---IRCCARNE----- 213

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
                                              G     +    +    +    P   
Sbjct: 214 ----------------------------------LGRECTRLFTIDLNQTPQ-TTLPQLF 238

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-----FSSLLSINSVS 259
           L  G    + C   H +    + W  + K L       +S   +           ++SV+
Sbjct: 239 LKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVA 298

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
              +G YTC +S   +Q   S+ + + 
Sbjct: 299 RNDTGYYTCSSSKHPSQ---SALVTIV 322

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  121 bits (305), Expect = 4e-32
 Identities = 42/335 (12%), Positives = 68/335 (20%), Gaps = 109/335 (32%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
              + T               L CI+   P P + W L   +  +               
Sbjct: 139 NTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEE-- 195

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG--------------------------------T 88
                    +    G +  C A N  G                                 
Sbjct: 196 -------KVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIR 248

Query: 89  CEITPYDSGPYLIAWFKDGRQIP--------------GRTSSTSLVINPVGREDRGIYQC 134
           C+    + G   + W  + + +                        ++ V R D G Y C
Sbjct: 249 CKAVHVNHGFG-LTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTC 307

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
            + +        SA + +    ++              E          Y          
Sbjct: 308 SSSKHPSQ----SALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAY---------- 353

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 251
                                         P +   W    K      P     LD+  S
Sbjct: 354 ------------------------------PQIRCTWTFSRKSF----PCEQKGLDNGYS 379

Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +S         GEY   A N  AQ      L ++
Sbjct: 380 -ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR 413

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score =  110 bits (275), Expect = 7e-28
 Identities = 27/194 (13%), Positives = 48/194 (24%), Gaps = 43/194 (22%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
                 +  +  L+ G  + ++C A   N    + W L+   L   N F +  + +    
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM 286

Query: 61  V-ISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
           + I    +S V   D G Y C +                                     
Sbjct: 287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCF 346

Query: 88  TCEITPYDSGPYL-IAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSDGD 142
           +     Y   P +   W    +  P       +  S+      +   G Y   A   D  
Sbjct: 347 SVRFKAY---PQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAENDDA- 402

Query: 143 VAQGSAELQLGGLP 156
                  L +    
Sbjct: 403 QFTKMFTLNIRSGT 416

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 80.9 bits (199), Expect = 2e-17
 Identities = 21/257 (8%), Positives = 45/257 (17%), Gaps = 80/257 (31%)

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-CEITPYD------------------------ 95
           V+ +   +  +V     Y  V+E+     C + P                          
Sbjct: 13  VLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEVDVSASITLQVLV 72

Query: 96  --SGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCIARRSDGDVAQG 146
              G     W      +  +           S+VI  +     G Y    +    +    
Sbjct: 73  DAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATN-YTI 131

Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
              + +       L            ++ C     P                        
Sbjct: 132 LFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVP------------------------ 167

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
                              + W+            +  +            +      + 
Sbjct: 168 ----------------EPIVEWVLCDSQ-----GESCKEESPAVVKKEEKVLHELFGTDI 206

Query: 267 TCVASNTAAQARYSSKL 283
            C A N   +       
Sbjct: 207 RCCARNELGRECTRLFT 223

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 73.9 bits (181), Expect = 3e-15
 Identities = 13/170 (7%), Positives = 38/170 (22%), Gaps = 46/170 (27%)

Query: 117 TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
            +   N         Y  ++   +        +        V     V       ++++ 
Sbjct: 15  INHKNNDSSVGKSSSYPMVSESPEDLGCALRPQ----SSGTVYEAAAVEVDVSASITLQV 70

Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
            V                                             ++  W+     L+
Sbjct: 71  LVDAPG----------------------------------------NISCLWVFKHSSLN 90

Query: 237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +   ++ +    S  + I  ++   +GEY     + A        + ++
Sbjct: 91  CQPHFDLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIR 138

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  132 bits (333), Expect = 3e-36
 Identities = 53/337 (15%), Positives = 83/337 (24%), Gaps = 88/337 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P+L     E   +      L+CI  GN       W  DG            +   G   
Sbjct: 6   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS-- 63

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
               +        D G Y C AE  AG                                 
Sbjct: 64  ----LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQ 119

Query: 89  --CEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDR---GI 131
             C +      P LI W K           T            +L    V +ED      
Sbjct: 120 LDCVLPNAYPKP-LITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYK 178

Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
           Y C A+ +  D      E ++                              + + +    
Sbjct: 179 YVCTAKNAAVDEEVVLVEYEI----------------------------KGVTKDNSGYK 210

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFS 250
              +  +         G  T + C     +P     + K+GK ++      ++    +  
Sbjct: 211 GEPVPQYVSKDMMAKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG 269

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK 286
             L   +      G YTC   N   +  ++S KL V 
Sbjct: 270 KRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVV 306

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  118 bits (298), Expect = 4e-31
 Identities = 65/333 (19%), Positives = 96/333 (28%), Gaps = 105/333 (31%)

Query: 11  EQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQ--FVSGHGDVISHVNI 67
           E+T   G    L C + +  P P I W         N           +G    +    +
Sbjct: 109 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIV 168

Query: 68  SHVTVEDGGEYACVAENRAGTCE----------ITPYDSGPYL----------------- 100
           +   V D  +Y C A+N A   E          +T  +SG                    
Sbjct: 169 TKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228

Query: 101 ---------------IAWFKDGRQIPG----------RTSSTSLVINPVGREDRGIYQCI 135
                            +FK+G+ + G          RTS   L+      ED G+Y C 
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288

Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPK--VTAIDGEGLSIKCPVAGYPIEEVHWEKVPP 193
                G   + S +L +   P     P+  +    G+ ++I C V G P          P
Sbjct: 289 VDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP---------AP 339

Query: 194 KIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSL 252
                                           + W  + KPLS  R  V         S 
Sbjct: 340 -------------------------------NVVWSHNAKPLSGGRATVT-------DSG 361

Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           L I  V     G Y C A+N      + + +QV
Sbjct: 362 LVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 394

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score =  116 bits (291), Expect = 3e-30
 Identities = 34/190 (17%), Positives = 57/190 (30%), Gaps = 48/190 (25%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P+  Y   +   + G    + C+   NP     +  +G ++  N    I +     G  
Sbjct: 212 EPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKR 271

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
           +          ED G Y C  +N  G                                  
Sbjct: 272 LL---FKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVT 328

Query: 89  --CEIT--PYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARRSDG 141
             C++T  P  +    + W  + + + G     + + LVI  V   D+G Y C A    G
Sbjct: 329 IPCKVTGLPAPN----VVWSHNAKPLSGGRATVTDSGLVIKGVKNGDKGYYGCRATNEHG 384

Query: 142 DVAQGSAELQ 151
           D       +Q
Sbjct: 385 DK-YFETLVQ 393

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  129 bits (326), Expect = 5e-36
 Identities = 63/322 (19%), Positives = 104/322 (32%), Gaps = 89/322 (27%)

Query: 11  EQTLQPGPAVSLKCIASGNPT-PDIGWT-LDGFELPTNNRFVIGQFVSGHGDVISHVNIS 68
           +  +  G +    C  +G+    DI W   +G +L  N + +    V  + D  S + I 
Sbjct: 11  QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRIS---VVWNDDDSSTLTIY 67

Query: 69  HVTVEDGGEYACVAENRAGTC---------------EITPYD---------------SG- 97
           +  ++D G Y CV     GT                +  P                    
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127

Query: 98  -PYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDG-DVAQGSA 148
            P  I W   GR +  +        S+  L I  + + D G Y+C  R     ++     
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187

Query: 149 ELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           ++ +   P V+        TA  G+ +++ C   G+P          P            
Sbjct: 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFP---------EP------------ 226

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSG 264
                              T+ W KDG+P+      +        SS L+I +V      
Sbjct: 227 -------------------TMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEA 267

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
           EY C+A N A +   S  L+V 
Sbjct: 268 EYVCIAENKAGEQDASIHLKVF 289

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 88.8 bits (220), Expect = 8e-21
 Identities = 27/89 (30%), Positives = 37/89 (41%), Gaps = 3/89 (3%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
                 S +  T   G +V+L C A G P P + WT DG  +            S     
Sbjct: 196 TVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS-- 253

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE 90
            S + I +V   D  EY C+AEN+AG  +
Sbjct: 254 -SELTIRNVDKNDEAEYVCIAENKAGEQD 281

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score =  129 bits (326), Expect = 8e-36
 Identities = 42/339 (12%), Positives = 88/339 (25%), Gaps = 84/339 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P      +        +++ +C     P  +  W+ D      + R  +          
Sbjct: 3   DPFTKEVVVNVDDDGVISLNFECDK-MTPKSEFSWSKDYVSTEDSPRLEVE-----SKGN 56

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL--------------------- 100
            + +    + ++D G Y+C   +  G       D                          
Sbjct: 57  KTKMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKSELA 116

Query: 101 -----------------------IAWFKDGRQIP----------GRTSSTSLVINPVGRE 127
                                  + +  + ++I             T    + +  +  E
Sbjct: 117 VEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTGIIEMFMEKLQDE 176

Query: 128 DRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVH 187
           D G Y    +      A   + + L G  + +L  +      E +  + P     +E + 
Sbjct: 177 DEGTYTFQLQ---DGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPH---FVEYLS 230

Query: 188 WEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 247
           WE               +       + C V +      I W KD + +S     +  D  
Sbjct: 231 WE---------------VTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFKD-- 273

Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                L I   S   +G Y  +  +   + +   KL  +
Sbjct: 274 -GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 311

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  126 bits (318), Expect = 6e-35
 Identities = 50/328 (15%), Positives = 86/328 (26%), Gaps = 95/328 (28%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +PP +  +  E  ++ G  +SL CI        + WT   +                  +
Sbjct: 11  SPPSIHPAQSELIVEAGDTLSLTCIDPDF----VRWTFKTYFNEMVE------------N 54

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT------------------------------CE 90
             +            G Y C   N   +                              C 
Sbjct: 55  KKNEWIQEKAEATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCP 114

Query: 91  ITPYDSGPYLIAWFK-DGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDV 143
           +T  D      +  + DG+ +P   +      +   + N      R   +C A+R    +
Sbjct: 115 LT--DPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCAAQRDGTWL 172

Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
                 L+      VR                              K  P +        
Sbjct: 173 HSDKFTLK------VREAI---------------------------KAIPVVSVPETSH- 198

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS------FSSLLSINS 257
            L +G    V+C +      +   WLK          V  +              L+I+S
Sbjct: 199 LLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISS 258

Query: 258 VSAAHSGEYTCVASNTAAQARYSSKLQV 285
                SG + C A+NT   A  ++ L+V
Sbjct: 259 ARVDDSGVFMCYANNTFGSANVTTTLKV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 64.0 bits (155), Expect = 4e-12
 Identities = 21/193 (10%), Positives = 40/193 (20%), Gaps = 49/193 (25%)

Query: 96  SGPYLIAWFKDGR-QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
             P  + W                 +         G Y C            S  + +  
Sbjct: 35  IDPDFVRWTFKTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLT----SSIYVFVRD 90

Query: 155 LPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
              + L+   +   +     ++CP+    + +    +                       
Sbjct: 91  PAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIE----------------------- 127

Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273
                            DGK L           +  + +   N   A H     C A   
Sbjct: 128 ----------------CDGKSLPTDLTFVP---NPKAGITIKNVKRAYHRLCVRCAAQR- 167

Query: 274 AAQARYSSKLQVK 286
                +S K  +K
Sbjct: 168 DGTWLHSDKFTLK 180

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score =  122 bits (307), Expect = 3e-34
 Identities = 45/285 (15%), Positives = 76/285 (26%), Gaps = 96/285 (33%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P +     + T + G A  L C   G P PDI W   G EL  + ++ +          
Sbjct: 7   APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKM-----SSDGR 61

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
              + +     ED G Y C+A N  G  E                        +S+ L++
Sbjct: 62  THTLTVMTEEQEDEGVYTCIATNEVGEVE------------------------TSSKLLL 97

Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY 181
                                  Q + +   G      L  K     G  L +     G 
Sbjct: 98  -----------------------QATPQFHPG----YPLKEKYYGAVGSTLRLHVMYIGR 130

Query: 182 PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV 241
           P          P                                + W    K L     +
Sbjct: 131 P---------VP-------------------------------AMTWFHGQKLLQNSENI 150

Query: 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            + + + ++ L+  N     H+G+Y    SN          ++++
Sbjct: 151 TIENTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  126 bits (318), Expect = 4e-34
 Identities = 60/332 (18%), Positives = 89/332 (26%), Gaps = 90/332 (27%)

Query: 2   PPILTYSFIEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
            P+            G A   V+L C A  NP     W ++G EL         + V+G 
Sbjct: 4   GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY-RLVAG- 61

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAGT------------------------------ 88
                 V  + V  +D G Y CVA N  GT                              
Sbjct: 62  ----DLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGW 117

Query: 89  -----CEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCI 135
                C   P         W  +                   +L I      D G Y C 
Sbjct: 118 GVMFTCSP-PPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGNYSCF 176

Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
           A      + +                           S+    +   +      +  P I
Sbjct: 177 ATSHIDFITK---------------------------SVFSKFSQLSLAAEDARQYAPSI 209

Query: 196 ESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 254
           ++  FP D     G    + C    G+P   I+W K     + ++        S   LL 
Sbjct: 210 KA-KFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLH 260

Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           I +V     G Y C A N   +  Y  ++ + 
Sbjct: 261 IQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 292

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score =  119 bits (301), Expect = 1e-31
 Identities = 60/335 (17%), Positives = 87/335 (25%), Gaps = 104/335 (31%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELP---TNNRFVIGQFVSG 57
                       +  G  V   C      P     W L+ F         RFV       
Sbjct: 101 QEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQ----T 156

Query: 58  HGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL----------------- 100
            G++     I+     D G Y+C A +       + +     L                 
Sbjct: 157 TGNLY----IAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK 212

Query: 101 --------------------------IAWFKDGRQIPGR--TSSTSLVINPVGREDRGIY 132
                                     I W K       +  +S   L I  V  ED G Y
Sbjct: 213 FPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTY 272

Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
           +C A    G        + +   P    +     A  G  L   C  +G P         
Sbjct: 273 ECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKP--------- 322

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS 251
                                          P  +RWL+DG+PL+ +  + VS       
Sbjct: 323 ------------------------------RP-AVRWLRDGQPLASQNRIEVSG-----G 346

Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            L  + +    SG Y CVA N       S++L V+
Sbjct: 347 ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ 381

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  122 bits (308), Expect = 2e-33
 Identities = 53/331 (16%), Positives = 94/331 (28%), Gaps = 98/331 (29%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           + P++  S  E  ++PG  V+L+C+ +G+    + W       P    +  G        
Sbjct: 3   SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGP--PSPHWTLYSDGS------- 49

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT-------------------------------- 88
             S ++ ++ T ++ G Y C                                        
Sbjct: 50  -SSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDAL 108

Query: 89  --CEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDG 141
             C +T       +      GR +   T           I+         YQC A     
Sbjct: 109 LPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSALMGGR 168

Query: 142 DVAQGSAELQ----LGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
            V   S  L+    + G P + L+P  +  I GE   I C  +                 
Sbjct: 169 KVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVD-------------- 214

Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFPVNVSDLDSFSSLLSI 255
                                        +    +   L+ P+     ++       L++
Sbjct: 215 -------------------------VNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNL 249

Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           + V   H+G Y+CVASN   +   S   +V 
Sbjct: 250 DQVDFQHAGNYSCVASNVQGKHSTSMFFRVV 280

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  124 bits (313), Expect = 2e-33
 Identities = 59/333 (17%), Positives = 92/333 (27%), Gaps = 79/333 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  L                ++C ASGNP P+I W         +   +      G   V
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKL-V 62

Query: 62  ISHVNISHVTVE-DGGEYACVAENRAGT-------------------------------- 88
                      E     YAC+A N+ G+                                
Sbjct: 63  FPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAV 122

Query: 89  --CEITPYDSGP-YLIAWFKDGRQIPGRTSST----------SLVINPVGRED-RGIYQC 134
             C I  + +    +++W  D  +     +             L I  VG ED    YQC
Sbjct: 123 IKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQC 182

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
             +       + SA                       L I  P+              P+
Sbjct: 183 RTKHRLTGETRLSATKGR-------------------LVITEPI----------SSSAPR 213

Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLL 253
             +       L       ++C    G P  + RW K  +  + +  V ++D +   S  L
Sbjct: 214 TPALVQKPLELMVAHTISLLCPAQ-GFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 272

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            I       SG+Y CV +N+       + L V 
Sbjct: 273 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVT 305

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  107 bits (269), Expect = 4e-27
 Identities = 48/183 (26%), Positives = 62/183 (33%), Gaps = 37/183 (20%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P           L     +SL C A G P P   W             V+   V      
Sbjct: 212 PRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGT 271

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE--------------ITPYD------------ 95
           +    I    VED G+Y CV  N  G                 I P              
Sbjct: 272 LI---IKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFT 328

Query: 96  ---SG--PYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
              +G     ++W KDG+ I    S + L I  V +ED+G+YQC  R      A+ SAEL
Sbjct: 329 CQYTGNPIKTVSWMKDGKAIG--HSESVLRIESVKKEDKGMYQCFVRNDRES-AEASAEL 385

Query: 151 QLG 153
           +LG
Sbjct: 386 KLG 388

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score =  102 bits (255), Expect = 4e-25
 Identities = 55/342 (16%), Positives = 88/342 (25%), Gaps = 113/342 (33%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
                     ++ +  G +  +KC+      +    + W  D  E         G+++  
Sbjct: 102 VAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVL 161

Query: 58  H-GDVISHVNISHVTVEDG-GEYACVAENRAGTCEIT------------PYDSGPYL--- 100
             G++     I  V  EDG   Y C  ++R                      S P     
Sbjct: 162 PSGELH----IREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL 217

Query: 101 --------------------------IAWFKDGRQIPG----------RTSSTSLVINPV 124
                                       W+K                 +  S +L+I   
Sbjct: 218 VQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDA 277

Query: 125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPI 183
             ED G Y C+   S G  +     L +      ++ P   T   G      C       
Sbjct: 278 VVEDSGKYLCVVNNSVGGESV-ETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQY----- 331

Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 243
                                               G+P  T+ W+KDGK +        
Sbjct: 332 -----------------------------------TGNPIKTVSWMKDGKAIGHS----- 351

Query: 244 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                  S+L I SV     G Y C   N    A  S++L++
Sbjct: 352 ------ESVLRIESVKKEDKGMYQCFVRNDRESAEASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 52.6 bits (126), Expect = 5e-08
 Identities = 15/101 (14%), Positives = 26/101 (25%), Gaps = 6/101 (5%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS- 248
           +  P                   + C    G+P   I W++         P         
Sbjct: 1   QKGPVFLKEPTNRIDFSNSTGAEIECKA-SGNPMPEIIWIRSDGTAVGDVPGLRQISSDG 59

Query: 249 ---FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
              F    + +     H+  Y C+A N       S  + V+
Sbjct: 60  KLVFPPFRAEDYRQEVHAQVYACLARNQFGSII-SRDVHVR 99

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  123 bits (311), Expect = 5e-33
 Identities = 66/331 (19%), Positives = 101/331 (30%), Gaps = 86/331 (25%)

Query: 1   TPPILT---YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG 57
           + P+        +         V L C   GNP P I W L+G ++     F     V G
Sbjct: 4   SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRY-SVVDG 62

Query: 58  HGDVISHVNISHVTVEDGGEYACVAENRAGT----------------------------- 88
                S +  +    +D G Y C+A N  GT                             
Sbjct: 63  -----SLLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRG 117

Query: 89  ------CEITPYDSGPYLIAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIA 136
                 C   P  SG    AW  +               + +L I  V + D G Y C+ 
Sbjct: 118 QGMVLLCGP-PPHSGELSYAWIFNEYPSYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVV 176

Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
             +  +             P   LI +   + GE                      PKIE
Sbjct: 177 TNTVTNHKVLG--------PPTPLILRNDGVMGE--------------------YEPKIE 208

Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFSSLLSI 255
                     +G   ++ C    G+P  TI W + DGKP++ +     +     + +L I
Sbjct: 209 VQFPETVPAEKGTTVKLECFAL-GNPVPTILWRRADGKPIARK-----ARRHKSNGILEI 262

Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +     +G Y CVA N+  +     +L   
Sbjct: 263 PNFQQEDAGSYECVAENSRGKNVAKGQLTFY 293

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  118 bits (298), Expect = 3e-31
 Identities = 61/333 (18%), Positives = 99/333 (29%), Gaps = 102/333 (30%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
               T +    +++ G  + L C     +      W  + +    +NR  +       G+
Sbjct: 102 ENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFV---SQETGN 158

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT-------------PYDSGPYL------- 100
           +     I+ V   D G Y CV  N     ++                +  P +       
Sbjct: 159 LY----IAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPET 214

Query: 101 ----------------------IAWFK-DGRQIPGRT----SSTSLVINPVGREDRGIYQ 133
                                 I W + DG+ I  +     S+  L I    +ED G Y+
Sbjct: 215 VPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYE 274

Query: 134 CIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
           C+A  S G       +L     P    I   +     E +  +C                
Sbjct: 275 CVAENSRGKNVA-KGQLTFYAQPNWVQIINDIHVAMEESVFWECKA-------------- 319

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
                                     +G P  T RWLK+G PL  R  + +         
Sbjct: 320 --------------------------NGRPKPTYRWLKNGDPLLTRDRIQIEQ-----GT 348

Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           L+I  V+ + +G Y CVA N       S++L V
Sbjct: 349 LNITIVNLSDAGMYQCVAENKHGVIFSSAELSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 67.2 bits (164), Expect = 7e-13
 Identities = 24/88 (27%), Positives = 36/88 (40%), Gaps = 9/88 (10%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P       +  +    +V  +C A+G P P   W  +G  L T +R  I         
Sbjct: 294 AQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDPLLTRDRIQI------EQG 347

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
            ++   I+ V + D G Y CVAEN+ G 
Sbjct: 348 TLN---ITIVNLSDAGMYQCVAENKHGV 372

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score =  114 bits (287), Expect = 1e-30
 Identities = 44/320 (13%), Positives = 77/320 (24%), Gaps = 96/320 (30%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            ++T      ++     V+L C     P      W L+G    T+               
Sbjct: 2   AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTST-------------- 47

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYL--------------------- 100
                I+  +V D GEY C       +  I       +L                     
Sbjct: 48  -PSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHA 106

Query: 101 --------IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
                   + ++++G+       +++L I        G Y C               + +
Sbjct: 107 WKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHR-YTSAGISVTV 165

Query: 153 GGL---PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
             L   P +        ++G  +++ C                                 
Sbjct: 166 KELFPAPVLNASVTSPLLEGNLVTLSCETKLLL--------------------------- 198

Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
                         L   +    K L  R         + SS   I +     SG Y C 
Sbjct: 199 --------QRPGLQLYFSFYMGSKTLRGR---------NTSSEYQILTARREDSGLYWCE 241

Query: 270 ASNTAAQARYSS---KLQVK 286
           A+         S   +LQV 
Sbjct: 242 AATEDGNVLKRSPELELQVL 261

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 81.1 bits (200), Expect = 3e-18
 Identities = 33/191 (17%), Positives = 59/191 (30%), Gaps = 52/191 (27%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
               L      +    G  ++L+C A  +    ++ +  +G      +            
Sbjct: 81  HRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWN---------- 130

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAG-------------------------------- 87
              S++ I    +   G Y C    +                                  
Sbjct: 131 ---SNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGNL 187

Query: 88  ---TCEITPYDSGPYLI---AWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG 141
              +CE       P L    +++   + + GR +S+   I    RED G+Y C A   DG
Sbjct: 188 VTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDSGLYWCEAATEDG 247

Query: 142 DVAQGSAELQL 152
           +V + S EL+L
Sbjct: 248 NVLKRSPELEL 258

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score =  111 bits (278), Expect = 7e-30
 Identities = 49/282 (17%), Positives = 77/282 (27%), Gaps = 94/282 (33%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           E  +     V L C  SG  +P + W  D  +      +      S    V         
Sbjct: 13  EVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRV--------- 63

Query: 71  TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 130
                                                         T +    V RED G
Sbjct: 64  ------------------------------------------TFLPTGITFKSVTREDTG 81

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
            Y C+     G+ + G  +++L                                 V    
Sbjct: 82  TYTCMVSEEGGN-SYGEVKVKL--------------------------------IVL--- 105

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVS 244
           VPP   +   P      G R  + C    G PP    W KDG  +         F  +  
Sbjct: 106 VPPSKPTVNIPS-SATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 164

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            L+  +  L  + +SA+ +GEY+C A N       S+ ++++
Sbjct: 165 VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 206

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 66.9 bits (163), Expect = 2e-13
 Identities = 24/90 (26%), Positives = 34/90 (37%), Gaps = 3/90 (3%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           PP      I  +   G    L C    G+P  +  W  DG  +PTN +       S +  
Sbjct: 107 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 166

Query: 61  VISHVN--ISHVTVEDGGEYACVAENRAGT 88
             +        ++  D GEY+C A N  GT
Sbjct: 167 NPTTGELVFDPLSASDTGEYSCEARNGYGT 196

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score =  112 bits (280), Expect = 3e-29
 Identities = 51/329 (15%), Positives = 90/329 (27%), Gaps = 94/329 (28%)

Query: 16  PGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
                   C  + N     I W  D  + P +        +  H + +         VED
Sbjct: 19  ANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTE--QASRIHQHKEKLW---FVPAKVED 73

Query: 75  GGEYACVAENRAG----TCEITPYDSGPYL------------------------------ 100
            G Y CV  N +            ++ P L                              
Sbjct: 74  SGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKN 133

Query: 101 -------IAWFKDGRQIPG-----RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
                  + W+KD + +             L++  V  + RG Y C A  +         
Sbjct: 134 ENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTCHASYTYL------- 186

Query: 149 ELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEG 208
               G    +  + +   ++                    +   P I S A     +  G
Sbjct: 187 ----GKQYPITRVIEFITLEEN------------------KPTRPVIVSPANETMEVDLG 224

Query: 209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-----------LDSFSSLLSINS 257
           ++ ++IC VT G       W  +G  +    PV   D             +  ++L+I+ 
Sbjct: 225 SQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISE 283

Query: 258 VSAAH-SGEYTCVASNTAAQARYSSKLQV 285
           + +      +TC A NT        +L  
Sbjct: 284 IESRFYKHPFTCFAKNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 87.5 bits (216), Expect = 4e-20
 Identities = 42/240 (17%), Positives = 64/240 (26%), Gaps = 59/240 (24%)

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSST-- 117
           D         + V    E           C + P +     I W+KD  + P  T     
Sbjct: 4   DKCKEREEKIILVSSANEIDVR------PCPLNPNEH-KGTITWYKDDSKTPVSTEQASR 56

Query: 118 ------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ-LGGLPYVRLIPKV----TA 166
                  L   P   ED G Y C+ R S     +     + +   P +    +       
Sbjct: 57  IHQHKEKLWFVPAKVEDSGHYYCVVRNSSY-CLRIKISAKFVENEPNLCYNAQAIFKQKL 115

Query: 167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI 226
                  + CP   +   E                                   +    +
Sbjct: 116 PVAGDGGLVCPYMEFFKNE----------------------------------NNELPKL 141

Query: 227 RWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +W KD KPL           D     L + +V+  H G YTC AS T    +Y     ++
Sbjct: 142 QWYKDCKPLLLDNIHFSGVKDR----LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIE 197

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 72.4 bits (177), Expect = 7e-15
 Identities = 18/97 (18%), Positives = 36/97 (37%), Gaps = 9/97 (9%)

Query: 1   TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS--- 56
           T P++     E   +  G  + L C  +G  +    W  +G  +  ++  +   + S   
Sbjct: 207 TRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVEN 266

Query: 57  ----GHGDVISHVNISHVTVED-GGEYACVAENRAGT 88
                   +I+ +NIS +        + C A+N  G 
Sbjct: 267 PANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGI 303

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score =  112 bits (280), Expect = 4e-29
 Identities = 52/352 (14%), Positives = 97/352 (27%), Gaps = 118/352 (33%)

Query: 9   FIEQTLQPGPAVSLKC-------IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           +  +    G  V+L+C        AS +P  ++ W  +               +      
Sbjct: 25  YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEE--ETRMWAQDGA 82

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT-------------PYDSGPYL-------- 100
           +    +     ED G Y C   N +   +++             P+ S P +        
Sbjct: 83  L---WLLPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGV 139

Query: 101 -----------------IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIA 136
                            I W+KD   +            +T L+++ V  ED G Y+C+ 
Sbjct: 140 LVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVL 199

Query: 137 RRSDGDV---AQGSAELQLGGLPYVRLIPK-------VTAIDGEGLSIKCPVAGYPIEEV 186
             +          S EL++        IP        ++A  G  L+I C V        
Sbjct: 200 TFAHEGQQYNITRSIELRIKK-KKEETIPVIISPLKTISASLGSRLTIPCKVF------- 251

Query: 187 HWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL----------- 235
                                         +  G P  T+ W                  
Sbjct: 252 ------------------------------LGTGTPLTTMLWWTANDTHIESAYPGGRVT 281

Query: 236 -SPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 285
             PR   + ++ +     L  + V+      ++ CV  NT +     + ++ 
Sbjct: 282 EGPRQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE 333

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 91.7 bits (227), Expect = 1e-21
 Identities = 29/197 (14%), Positives = 55/197 (27%), Gaps = 49/197 (24%)

Query: 101 IAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           + W K+                   +L + P  +ED G Y C  R +     + S EL++
Sbjct: 57  LTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASY-CDKMSIELRV 115

Query: 153 GGLPYV---RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
                     +             + CP                                
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPD------------------------------- 144

Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
               +   T     + I+W KD   L       +S   +  + L ++ V+   +G Y CV
Sbjct: 145 ----LSEFTRDKTDVKIQWYKDSLLLDKDNEKFLSVRGT--THLLVHDVALEDAGYYRCV 198

Query: 270 ASNTAAQARYSSKLQVK 286
            +      +Y+    ++
Sbjct: 199 LTFAHEGQQYNITRSIE 215

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 64.7 bits (157), Expect = 3e-12
 Identities = 16/104 (15%), Positives = 32/104 (30%), Gaps = 12/104 (11%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNN----RFVIGQ 53
           T P++       +   G  +++ C   + +G P   + W         +     R   G 
Sbjct: 225 TIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGP 284

Query: 54  F----VSGHGDVISHVNISHVTVED-GGEYACVAENRAGTCEIT 92
                 +    +   +    VT ED   ++ CV  N      + 
Sbjct: 285 RQEYSENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLR 328

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 59.3 bits (143), Expect = 3e-10
 Identities = 12/70 (17%), Positives = 23/70 (32%), Gaps = 1/70 (1%)

Query: 217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
                P + + W K+    +         + +    L +       SG Y C   N +  
Sbjct: 48  WASVSPRINLTWHKNDSARTVPGEEETR-MWAQDGALWLLPALQEDSGTYVCTTRNASYC 106

Query: 277 ARYSSKLQVK 286
            + S +L+V 
Sbjct: 107 DKMSIELRVF 116

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score =  106 bits (266), Expect = 4e-28
 Identities = 46/237 (19%), Positives = 71/237 (29%), Gaps = 39/237 (16%)

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP--GRTSS 116
           G  I+   +S   ++        AE       +T Y      + W  +G  I    R  +
Sbjct: 1   GSSIA---LSATDLKI----QSTAEGIQLYSFVTYYVEDLK-VNWSHNGSAIRYSDRVKT 52

Query: 117 T------SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGE 170
                   L IN     D+G Y            Q + +L                  G+
Sbjct: 53  GVTGEQIWLQINEPTPNDKGKYVMELFDGKT-GHQKTVDLS-----------------GQ 94

Query: 171 GLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK 230
                        +    EK   ++         + EG    + C V  GDPP  + WLK
Sbjct: 95  AYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVW-GDPPPEVSWLK 153

Query: 231 DGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           + K L  +    +      +     +IN VS A SG+Y  V  N          + V
Sbjct: 154 NEKALAQTDHCNLKFEAGRTAY--FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 81.8 bits (202), Expect = 7e-19
 Identities = 20/91 (21%), Positives = 38/91 (41%), Gaps = 4/91 (4%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +L       T+Q G A++L C   G+P P++ W  +   L   +   +          
Sbjct: 117 ARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF----EAGR 172

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            ++  I+ V+  D G+Y  V +N+ G+    
Sbjct: 173 TAYFTINGVSTADSGKYGLVVKNKYGSETSD 203

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 72.2 bits (177), Expect = 3e-15
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 1/75 (1%)

Query: 212 RVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
           ++   VT+    L + W  +G  +     V          L  IN  +    G+Y     
Sbjct: 21  QLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGVTGEQIWLQ-INEPTPNDKGKYVMELF 79

Query: 272 NTAAQARYSSKLQVK 286
           +     + +  L  +
Sbjct: 80  DGKTGHQKTVDLSGQ 94

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score =  108 bits (272), Expect = 7e-28
 Identities = 48/291 (16%), Positives = 72/291 (24%), Gaps = 89/291 (30%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P        +     G AV L C    G P     W  DG  L  + R ++G        
Sbjct: 8   PGPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVGP------- 60

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
               + + + + ED G Y+C                                    +  V
Sbjct: 61  --QRLQVLNASHEDSGAYSCRQRLTQRV------------------------LCHFSVRV 94

Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-----VTAIDGEGLSIK 175
            +     D           +    +        G PY     +     +       +  +
Sbjct: 95  TDAPSSGD----------DEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFR 144

Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
           CP AG P          P                               +I WLK+G+  
Sbjct: 145 CPAAGNP---------TP-------------------------------SISWLKNGREF 164

Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                +    L      L + SV  +  G YTCV  N     R +  L V 
Sbjct: 165 RGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVL 215

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 94.3 bits (234), Expect = 1e-22
 Identities = 47/276 (17%), Positives = 80/276 (28%), Gaps = 83/276 (30%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
             +     V  +C A+GNPTP I W  +G E    +R    +       ++    +  V 
Sbjct: 133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLV----MESVV 188

Query: 72  VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
             D G Y CV EN+ G+                           + +L +  + R     
Sbjct: 189 PSDRGNYTCVVENKFGSIR------------------------QTYTLDV--LERSPHRP 222

Query: 132 YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV 191
                  ++     GS                        +   C V       + W K 
Sbjct: 223 ILQAGLPANQTAVLGSD-----------------------VEFHCKVYSDAQPHIQWLK- 258

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFS 250
                                              +   DG P         ++  D   
Sbjct: 259 ----------------------------HVEVNGSKVGPDGTPYVTVLKTAGANTTDKEL 290

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +LS+++V+   +GEYTC+A N+   + +S+ L V 
Sbjct: 291 EVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL 326

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 69.3 bits (169), Expect = 1e-13
 Identities = 21/99 (21%), Positives = 35/99 (35%), Gaps = 8/99 (8%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT----LDGFELPTNNRFVIGQFVSG 57
           P +       QT   G  V   C    +  P I W     ++G ++  +    +    + 
Sbjct: 222 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTA 281

Query: 58  HGDVISHVN----ISHVTVEDGGEYACVAENRAGTCEIT 92
             +          + +VT ED GEY C+A N  G    +
Sbjct: 282 GANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHS 320

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score =  104 bits (262), Expect = 1e-27
 Identities = 49/291 (16%), Positives = 77/291 (26%), Gaps = 104/291 (35%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P          ++     +L C  +G+P P + W   G E+  +               
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYR---------- 53

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
                   +    GG +                                        L+I
Sbjct: 54  --------IQEFKGGYH---------------------------------------QLII 66

Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP------YVRLIPKVTAIDGEGLSIK 175
             V  +D  +YQ  A    G    G+A L++           +  +  V A+ GE +SIK
Sbjct: 67  ASVTDDDATVYQVRATNQGG-SVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIK 125

Query: 176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL 235
            P +G P                                        P  I W K    +
Sbjct: 126 IPFSGKP---------------------------------------DP-VITWQKGQDLI 145

Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                  V    SF+SL+  N V    +G Y   A N     + + +L V 
Sbjct: 146 DNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA 196

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 75.1 bits (185), Expect = 2e-16
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P             G  VS+K   SG P P I W      +  N  + +         
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQV----IVTRS 158

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             S V  + V  +D G Y   A+NR G  + T
Sbjct: 159 FTSLVFPNGVERKDAGFYVVCAKNRFGIDQKT 190

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score =  103 bits (259), Expect = 2e-27
 Identities = 39/187 (20%), Positives = 59/187 (31%), Gaps = 43/187 (22%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
              L  + ++ T+  G  V L C   G   PDI W  DG  +   ++  I          
Sbjct: 2   GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYI---PVSEQHW 58

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
           I  +++  V   D G Y C  E+   T                                 
Sbjct: 59  IGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQL 118

Query: 89  -CEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
            CE    P    P  I W++   +I G   S   V+N  G     ++ C A    G  + 
Sbjct: 119 SCEAVGPP---EPVTIVWWRGTTKIGGPAPSP-SVLNVTGVTQSTMFSCEAHNLKGLASS 174

Query: 146 GSAELQL 152
            +A + L
Sbjct: 175 RTATVHL 181

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 89.9 bits (223), Expect = 4e-22
 Identities = 33/199 (16%), Positives = 54/199 (27%), Gaps = 63/199 (31%)

Query: 101 IAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
           I W KDG  +            +     L +  V R D G Y C               L
Sbjct: 34  IQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWL 93

Query: 151 QLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
            + G+P+  + PK +         + C   G P                           
Sbjct: 94  TVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPP--------------------------- 126

Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
                        P+TI W +    +    P          S   +N      S  ++C 
Sbjct: 127 ------------EPVTIVWWRGTTKIGGPAP----------SPSVLNVTGVTQSTMFSCE 164

Query: 270 ASNTA--AQARYSSKLQVK 286
           A N    A +R ++ + ++
Sbjct: 165 AHNLKGLASSR-TATVHLQ 182

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 62.5 bits (152), Expect = 5e-12
 Identities = 18/82 (21%), Positives = 34/82 (41%), Gaps = 3/82 (3%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-FSSLLSINSVSAAHSGE 265
           +G   ++ C V  G     I+W+KDG  +     + +   +  +   LS+ SV  + +G 
Sbjct: 16  QGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGR 74

Query: 266 YTCVASNTA-AQARYSSKLQVK 286
           Y C   +    +      L V+
Sbjct: 75  YWCQVEDGGETEISQPVWLTVE 96

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score =  107 bits (267), Expect = 3e-27
 Identities = 48/348 (13%), Positives = 83/348 (23%), Gaps = 110/348 (31%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKC---------IASGNPTPDIGWTLDGFELPTNNRFVIG 52
           P  +    +      G   S KC             +    + W   G      NR V  
Sbjct: 29  PSCMFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-- 86

Query: 53  QFVSGHGDVISHVNISHVTVED-GGEYACVAENRAGT----------------------- 88
                    +    I++ T  D    Y C    + G                        
Sbjct: 87  -----KNGDLW---IANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYEL 138

Query: 89  -----------CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIY 132
                      C I         I W+K+ +++         S  +L+I+    ED G Y
Sbjct: 139 GTHDKYGIDLYCGILYAKHYNN-ITWYKNNQELIIDGTKYSQSGQNLIIHNPELEDSGRY 197

Query: 133 QCIARRSDGDV-----AQGSAELQLGGLPY----VRLIPKVTAIDGEGLSIKCPVAGYPI 183
            C     D  +           L +         + L PK+    GE  +I C      +
Sbjct: 198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSL 257

Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RF 239
                                                   + I W      +       +
Sbjct: 258 ------------------------------------LVDDVLIDWENPSGWIIGLDFGVY 281

Query: 240 PVNVSDLDSFSSLLSINSVSAAHSGE-YTCVASNTAAQARYSSKLQVK 286
            +  S      + L   +V+  + G  YTC   N       ++ + ++
Sbjct: 282 SILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVLE 329

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score =  102 bits (255), Expect = 2e-26
 Identities = 48/283 (16%), Positives = 71/283 (25%), Gaps = 95/283 (33%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           +  +    ++ L C  SG  +P + W            +            I+      V
Sbjct: 10  DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCY---------NSQITAPYADRV 60

Query: 71  TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRG 130
           T                                               +  + V R+D G
Sbjct: 61  TFSSS------------------------------------------GITFSSVTRKDNG 78

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
            Y C+     G    G   + L                                 V    
Sbjct: 79  EYTCMVSEEGGQ-NYGEVSIHL--------------------------------TVL--- 102

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-------RFPVNV 243
           VPP   + + P   +  G R  + C    G PP    W KDG  +          F  + 
Sbjct: 103 VPPSKPTISVPS-SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 161

Query: 244 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
             +D  S  L  + V+A  SGEY C A N    A  S    + 
Sbjct: 162 FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMD 204

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 64.2 bits (156), Expect = 2e-12
 Identities = 23/91 (25%), Positives = 34/91 (37%), Gaps = 4/91 (4%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           PP      +  ++  G    L C    G+P  +  W  DG  + T +      F++    
Sbjct: 104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 163

Query: 61  VISHV---NISHVTVEDGGEYACVAENRAGT 88
           +           VT  D GEY C A+N  GT
Sbjct: 164 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT 194

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score =  104 bits (260), Expect = 3e-26
 Identities = 45/332 (13%), Positives = 85/332 (25%), Gaps = 92/332 (27%)

Query: 16  PGPAVSLKCIASGNPTPDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTV 72
               +      + +    + W     +       N  +    +S   DV+         +
Sbjct: 32  FEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVL---WFRPTLL 88

Query: 73  EDGGEYACVAENRAGTCEIT---------------------------------------- 92
            D G Y C+  N     ++                                         
Sbjct: 89  NDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGY 148

Query: 93  PYDSGPYLIAWFKDGRQIPGR----TSSTSLVINPVGREDRGIYQCIARRSD-GDVAQGS 147
              S    I W+    +I           +L        + G Y C+    + G     +
Sbjct: 149 FPSSVKPTITWYMGCYKIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLT 208

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
             L +     V   PK             PV   P + V +E                  
Sbjct: 209 RTLTV----KVVGSPKNAVP---------PVIHSPNDHVVYE---------------KEP 240

Query: 208 GARTRVICGVTH---GDPPLTIRWLKDGKPL---------SPRFPVNVSDLDSFSSLLSI 255
           G    + C V      D    + W  DGK           +     + ++ ++ + +LSI
Sbjct: 241 GEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSI 300

Query: 256 NSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
             V++      Y C A +   +   ++K++ K
Sbjct: 301 KKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK 332

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 75.7 bits (185), Expect = 7e-16
 Identities = 30/235 (12%), Positives = 56/235 (23%), Gaps = 63/235 (26%)

Query: 67  ISHVTVEDGGEYA---CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--------- 114
           +  + V +  E A   C           +   S    + W+   +               
Sbjct: 14  MRQIQVFED-EPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPEN 72

Query: 115 ----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL-----GGLPYVRLIPKVT 165
                   L   P    D G Y C+ R +    ++ +  L++          ++L     
Sbjct: 73  RISKEKDVLWFRPTLLNDTGNYTCMLRNTTYC-SKVAFPLEVVQKDSCFNSPMKLPVHKL 131

Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 225
            I+     I CP                 ++ +                          T
Sbjct: 132 YIEYGIQRITCPN----------------VDGYF-------------------PSSVKPT 156

Query: 226 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           I W      +     V           LS      +++G YTCV +       + 
Sbjct: 157 ITWYMGCYKIQNFNNVIPEG-----MNLSFLIALISNNGNYTCVVTYPENGRTFH 206

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 62.2 bits (150), Expect = 3e-11
 Identities = 20/101 (19%), Positives = 35/101 (34%), Gaps = 12/101 (11%)

Query: 2   PPILTYSFIEQTL--QPGPAVSLKCIA----SGNPTPDIGWTLDG---FELPTNNRFVIG 52
           PP++           +PG  + + C        +   ++ WT+DG    ++  +      
Sbjct: 224 PPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINES 283

Query: 53  QFVSGHGD--VISHVNISHVTVED-GGEYACVAENRAGTCE 90
              S   D      ++I  VT ED    Y C A +  G   
Sbjct: 284 ISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVA 324

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 61.8 bits (149), Expect = 4e-11
 Identities = 20/133 (15%), Positives = 41/133 (30%), Gaps = 33/133 (24%)

Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV 217
           +  + ++   + E   IKCP+  + ++                                 
Sbjct: 11  LDTMRQIQVFEDEPARIKCPLFEHFLK-----------------------------FNYS 41

Query: 218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNT 273
           T     LT+ W    +      P+N    ++       +L         +G YTC+  NT
Sbjct: 42  TAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNT 101

Query: 274 AAQARYSSKLQVK 286
              ++ +  L+V 
Sbjct: 102 TYCSKVAFPLEVV 114

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score =  100 bits (252), Expect = 4e-26
 Identities = 50/287 (17%), Positives = 82/287 (28%), Gaps = 99/287 (34%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P  T       +  G   + +   SG P P++ W  DG  + T+    +          
Sbjct: 5   APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGV---------- 54

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
                   ++  DG                                           L I
Sbjct: 55  -------QISFSDG----------------------------------------RAKLTI 67

Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGY 181
             V + + G Y   A    G  A  +AEL                               
Sbjct: 68  PAVTKANSGRYSLKATNGSG-QATSTAELL------------------------------ 96

Query: 182 PIEEVHWEKVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF 239
               V  E  PP    F      +   +G++ R+   VT G P   +++ +DG  +    
Sbjct: 97  ----VKAETAPPN---FVQRLQSMTVRQGSQVRLQVRVT-GIPTPVVKFYRDGAEIQSSL 148

Query: 240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
              +S      SLL I       SG Y+  A+N+  +A  +++L V+
Sbjct: 149 DFQISQEGDLYSLL-IAEAYPEDSGTYSVNATNSVGRATSTAELLVQ 194

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 83.6 bits (207), Expect = 1e-19
 Identities = 27/90 (30%), Positives = 40/90 (44%), Gaps = 5/90 (5%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            PP         T++ G  V L+   +G PTP + +  DG E+ ++  F I Q     GD
Sbjct: 102 APPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ----EGD 157

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE 90
           + S + I+    ED G Y+  A N  G   
Sbjct: 158 LYSLL-IAEAYPEDSGTYSVNATNSVGRAT 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  100 bits (250), Expect = 6e-26
 Identities = 35/208 (16%), Positives = 64/208 (30%), Gaps = 51/208 (24%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPG---RTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
            C +T          W K+G ++       S+    IN    ED G Y C+         
Sbjct: 24  QCNLTSSSHTLMYSYWTKNGVELTATRKNASNMEYRINKPRAEDSGEYHCVYHFVSA--P 81

Query: 145 QGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
           + +A +++   P +    +     +G+   + C   GYP          P          
Sbjct: 82  KANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYP---------HP---------- 122

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSV 258
                                   W K    +            + + ++++ L  +N  
Sbjct: 123 ---------------------EWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQ 161

Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQVK 286
                GEY C A+N+   A  S+ L+V+
Sbjct: 162 ITEDPGEYECNATNSIGSASVSTVLRVR 189

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 90.3 bits (224), Expect = 4e-22
 Identities = 21/88 (23%), Positives = 36/88 (40%), Gaps = 1/88 (1%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P +T     +    G    + C + G P P+  W      +        G+F   + + 
Sbjct: 92  APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFIINKEN 151

Query: 62  ISHVNISHVTV-EDGGEYACVAENRAGT 88
            + +NI ++ + ED GEY C A N  G+
Sbjct: 152 YTELNIVNLQITEDPGEYECNATNSIGS 179

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 73.0 bits (179), Expect = 9e-16
 Identities = 36/200 (18%), Positives = 52/200 (26%), Gaps = 65/200 (32%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGH 58
             P +  S           V+L+C  + +    +   WT +G EL    +          
Sbjct: 2   NEPRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNASN------ 55

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
                   I+    ED GEY CV    +                                
Sbjct: 56  ----MEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDITGHKRSENKNEGQDAM 111

Query: 88  -TCEIT--PYDSGPYLIAWFKDGRQIP-------GR-------TSSTSLVINPVGREDRG 130
             C+    P         W K    +        GR         +   ++N    ED G
Sbjct: 112 MYCKSVGYP----HPEWMWRKKENGVFEEISNSSGRFFIINKENYTELNIVNLQITEDPG 167

Query: 131 IYQCIARRSDGDVAQGSAEL 150
            Y+C A  S G  A  S  L
Sbjct: 168 EYECNATNSIG-SASVSTVL 186

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 65.6 bits (160), Expect = 4e-13
 Identities = 19/98 (19%), Positives = 38/98 (38%), Gaps = 9/98 (9%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVT-HGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
           +  P+I +               + C +T      +   W K+G  L+       +  ++
Sbjct: 1   QNEPRIVTSEEVIIRD-SLLPVTLQCNLTSSSHTLMYSYWTKNGVELTA------TRKNA 53

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +    IN   A  SGEY CV  +  +  + ++ ++VK
Sbjct: 54  SNMEYRINKPRAEDSGEYHCVY-HFVSAPKANATIEVK 90

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score =  102 bits (254), Expect = 1e-25
 Identities = 41/320 (12%), Positives = 74/320 (23%), Gaps = 95/320 (29%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           E  L       L C  S      + W     E P           +  G   S + ++++
Sbjct: 9   ELVLNVSSTFVLTCSGSAP----VVWERMSQEPPQEMA------KAQDGTFSSVLTLTNL 58

Query: 71  TVEDGGEYACVAENRAGTCEITPYD----------------------------------- 95
           T  D GEY C   +  G                                           
Sbjct: 59  TGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCR 118

Query: 96  -SGPYL-IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
            + P L +   +    +              G  +   Y C     D +V   +  +   
Sbjct: 119 VTDPQLVVTLHEKKGDVALPVPY-DHQRGFSGIFEDRSYICKTTIGDREVDSDAYYVYRL 177

Query: 154 GLPYVRLI---PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
            +  + +     +     GE +++ C V                                
Sbjct: 178 QVSSINVSVNAVQTVVRQGENITLMCIV-------------------------------- 205

Query: 211 TRVICGVTHGDPPLTIRWLKDGK----PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
                    G+  +   W    K     + P     +       S+L I S     SG Y
Sbjct: 206 --------IGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTY 257

Query: 267 TCVASNTAAQARYSSKLQVK 286
           TC  + +    +    + + 
Sbjct: 258 TCNVTESVNDHQDEKAINIT 277

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 68.6 bits (167), Expect = 1e-13
 Identities = 17/88 (19%), Positives = 33/88 (37%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +   ++ + ++  ++ G  ++L CI  GN   +  WT    E       V    +     
Sbjct: 180 SSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYH 239

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
           + S ++I    +ED G Y C        
Sbjct: 240 IRSILHIPSAELEDSGTYTCNVTESVND 267

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score =  100 bits (250), Expect = 1e-25
 Identities = 40/191 (20%), Positives = 58/191 (30%), Gaps = 43/191 (22%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-VSGHGD 60
           PP +     +  +  G   +L C A G PTP I W   G  + T+         +   G 
Sbjct: 9   PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 61  V-ISHVNISHVTVEDGGEYACVAENRAGT------------------------------- 88
           +    +     +  D G Y CVA N  G                                
Sbjct: 69  LFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEP 128

Query: 89  ----CEITPYDSGPYLIAWFKDGRQIPGR-----TSSTSLVINPVGREDRGIYQCIARRS 139
               C+  P       I+W KDG  +  +          L+I    + D G Y C+    
Sbjct: 129 AVMECQP-PRGHPEPTISWKKDGSPLDDKDERITIRGGKLMITYTRKSDAGKYVCVGTNM 187

Query: 140 DGDVAQGSAEL 150
            G+     AEL
Sbjct: 188 VGERESEVAEL 198

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 56.0 bits (135), Expect = 1e-09
 Identities = 20/86 (23%), Positives = 28/86 (32%), Gaps = 8/86 (9%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN------VSDLDSFSSLLSINSVSA 260
           +G    + C    G P  TI W K G+ +             +     F   +     S 
Sbjct: 23  KGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSR 81

Query: 261 AHSGEYTCVASNTAAQARYSS-KLQV 285
              G Y CVA N   +A      L+V
Sbjct: 82  PDEGVYVCVARNYLGEAVSHDASLEV 107

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  101 bits (254), Expect = 2e-25
 Identities = 46/250 (18%), Positives = 84/250 (33%), Gaps = 65/250 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGD 60
            P          ++     +L C  +G+P P + W   G E+  +  ++ I +F  G+  
Sbjct: 4   APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQ 63

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT---------------------------- 92
           +I    I+ VT +D   Y   A N+ G+   T                            
Sbjct: 64  LI----IASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRG 119

Query: 93  -------PYDSGPYL-IAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCI 135
                  P+   P   I W K    I           R+ ++ +  N V R+D G Y   
Sbjct: 120 EVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSLVFPNGVERKDAGFYVVC 179

Query: 136 ARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIK---------CPVAGYPIE-- 184
           A ++   + Q + EL +  +P      KV+ +  + +++            +  Y +E  
Sbjct: 180 A-KNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKC 238

Query: 185 ---EVHWEKV 191
                 W +V
Sbjct: 239 ATTAERWLRV 248

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 67.1 bits (164), Expect = 5e-13
 Identities = 23/92 (25%), Positives = 31/92 (33%), Gaps = 4/92 (4%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P             G  VS+K   SG P P I W      +  N  + +    S    
Sbjct: 103 HLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRSFTSL 162

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           V      + V  +D G Y   A+NR G  + T
Sbjct: 163 VF----PNGVERKDAGFYVVCAKNRFGIDQKT 190

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 59.8 bits (145), Expect = 1e-10
 Identities = 17/81 (20%), Positives = 33/81 (40%), Gaps = 2/81 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGE 265
             +   ++C VT G P   ++W + GK +        + +       L I SV+   +  
Sbjct: 18  YQSNATLVCKVT-GHPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATV 76

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y   A+N       ++ L+V+
Sbjct: 77  YQVRATNQGGSVSGTASLEVE 97

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 99.2 bits (247), Expect = 3e-25
 Identities = 52/292 (17%), Positives = 78/292 (26%), Gaps = 101/292 (34%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P +     +  ++     +L C   G P P I W  DG  + TN +             
Sbjct: 9   SPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEK------------- 55

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
                   V  +DG  +                                          +
Sbjct: 56  ----KSHRVQFKDGALF--------------------------------------FYRTM 73

Query: 122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVRLIPK-VTAIDGEGLSIKCPVA 179
                +D G Y C+A+   G      A LQ+  L    R+ PK      GE   ++C   
Sbjct: 74  QGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPP 133

Query: 180 GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF 239
                                                   G P  T+ W+KDG PL    
Sbjct: 134 ---------------------------------------KGIPEPTLIWIKDGVPLDDLK 154

Query: 240 PVNVSDLDSFSSL----LSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
            ++         +    L I++V     G Y C+A N       S  KL V+
Sbjct: 155 AMSFGASSRVRIVDGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQ 206

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 98.7 bits (246), Expect = 4e-25
 Identities = 59/292 (20%), Positives = 87/292 (29%), Gaps = 99/292 (33%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           TPP  T + ++QT   G   S  C A+G+P P I W   G ++      VI +F  G G 
Sbjct: 5   TPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVI-EFDDGSGS 63

Query: 61  VISHVNISHV-TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSL 119
           V+    I  + T  D   Y CVA N  G                            ST L
Sbjct: 64  VL---RIQPLRTPRDEAIYECVASNNVGEIS------------------------VSTRL 96

Query: 120 VINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPV 178
            +    +  R                        G P + + P+          ++ C  
Sbjct: 97  TVLREDQIPR------------------------GFPTIDMGPQLKVVERTRTATMLCAA 132

Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP- 237
           +G P          P                                I W KD  P+   
Sbjct: 133 SGNP---------DP-------------------------------EITWFKDFLPVDTS 152

Query: 238 --RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
                +     +S  +L  I     +  G+Y CVA+N+A     +   L V+
Sbjct: 153 NNNGRIKQLRSESIGALQ-IEQSEESDQGKYECVATNSAGTRYSAPANLYVR 203

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 68.3 bits (167), Expect = 7e-14
 Identities = 30/104 (28%), Positives = 40/104 (38%), Gaps = 6/104 (5%)

Query: 184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV 243
           E       PP+         G+  G     IC  T GDP   I W K GK +S +    +
Sbjct: 1   ETGE---TPPRFTRTPVDQTGV-SGGVASFICQAT-GDPRPKIVWNKKGKKVSNQRFEVI 55

Query: 244 SDLDSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
              D   S+L I  +        Y CVASN   +   S++L V 
Sbjct: 56  EFDDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVL 99

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 97.3 bits (242), Expect = 1e-24
 Identities = 33/284 (11%), Positives = 61/284 (21%), Gaps = 86/284 (30%)

Query: 8   SFIE-----QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
            F +     + L+ G           +    + +  +  E+    ++ +       G  I
Sbjct: 4   PFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKM-HIDRNTG--I 60

Query: 63  SHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
             + +  +  ED G Y    ++   T   T    G       K+                
Sbjct: 61  IEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQR----------- 109

Query: 123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYP 182
                                     E      P+              + +KC VA   
Sbjct: 110 -------------------------QEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIK 144

Query: 183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN 242
                                                      I W KD + +S      
Sbjct: 145 ---------------------------------------KETHIVWYKDEREISVDEKH- 164

Query: 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
             D       L I   S   +G Y  +  +   + +   KL  +
Sbjct: 165 --DFKDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE 206

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 96.3 bits (240), Expect = 2e-24
 Identities = 37/191 (19%), Positives = 59/191 (30%), Gaps = 51/191 (26%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P++T              +  C     P P+I WT +   +   +       +  +G +
Sbjct: 7   APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYS---IRENGQL 63

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT--------------------------------- 88
           ++   I  V   D G Y C A N  G                                  
Sbjct: 64  LT---ILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVL 120

Query: 89  -CEIT--PYDSGPYLIAWFKDGRQIP--GR---TSSTSLVINPVGREDRGIYQCIARRSD 140
            C     P       ++W K    +    R     S SL I+ V +ED G Y+C+A+ S 
Sbjct: 121 PCTTMGNP----KPSVSWIKGDSALRENSRIAVLESGSLRIHNVQKEDAGQYRCVAKNSL 176

Query: 141 GDVAQGSAELQ 151
           G       +L+
Sbjct: 177 GTAYSKLVKLE 187

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 91.7 bits (228), Expect = 1e-22
 Identities = 42/195 (21%), Positives = 63/195 (32%), Gaps = 53/195 (27%)

Query: 101 IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
           I+W ++   I           +   L I  V   D GIY C A    G   +    LQ+ 
Sbjct: 39  ISWTRNKILIKLFDTRYSIRENGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVK 98

Query: 154 GLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTR 212
             P +   P  V  I+G    + C   G P          P                   
Sbjct: 99  MKPKITRPPINVKIIEGLKAVLPCTTMGNP---------KP------------------- 130

Query: 213 VICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
                       ++ W+K    L     + V +    S  L I++V    +G+Y CVA N
Sbjct: 131 ------------SVSWIKGDSALRENSRIAVLE----SGSLRIHNVQKEDAGQYRCVAKN 174

Query: 273 TAAQARYSS-KLQVK 286
           +   A     KL+V+
Sbjct: 175 SLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 61.3 bits (149), Expect = 1e-11
 Identities = 22/86 (25%), Positives = 32/86 (37%), Gaps = 10/86 (11%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAA 261
                    +C V    P   I W ++   +     R+ +  +       LL+I SV  +
Sbjct: 19  ALVEEVATFMCAVE-SYPQPEISWTRNKILIKLFDTRYSIRENG-----QLLTILSVEDS 72

Query: 262 HSGEYTCVASNTAAQARYSS-KLQVK 286
             G Y C A+N    A  S   LQVK
Sbjct: 73  DDGIYCCTANNGVGGAVESCGALQVK 98

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 96.5 bits (240), Expect = 3e-24
 Identities = 35/174 (20%), Positives = 52/174 (29%), Gaps = 35/174 (20%)

Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL 160
             WFK  ++IP   +S  L+ N V  +D G Y C    +        ++L       V  
Sbjct: 50  YQWFKMNKEIPNGNTSE-LIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLD------VCD 102

Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
           IP+      +G+S                               L  G+   + C    G
Sbjct: 103 IPESFQRSVDGVSESKLQICVEPTSQK-----------------LMPGSTLVLQCVAV-G 144

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
            P    +W K+  PL+               L  +  V   H G Y C   N  
Sbjct: 145 SPIPHYQWFKNELPLTH----------ETKKLYMVPYVDLEHQGTYWCHVYNDR 188

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 68.4 bits (167), Expect = 7e-14
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 14/88 (15%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +   +      Q L PG  + L+C+A G+P P   W  +   L    + +          
Sbjct: 117 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETKKLY--------- 167

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
                 + +V +E  G Y C   N   +
Sbjct: 168 -----MVPYVDLEHQGTYWCHVYNDRDS 190

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 59.9 bits (145), Expect = 7e-11
 Identities = 19/82 (23%), Positives = 30/82 (36%), Gaps = 12/82 (14%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G   ++ C  T G P +  +W K  K +           +  +S L  N+V    +G 
Sbjct: 31  LAGQFVKLCCRAT-GHPFVQYQWFKMNKEIP----------NGNTSELIFNAVHVKDAGF 79

Query: 266 YTCVASNTAAQAR-YSSKLQVK 286
           Y C  +N         S+L V 
Sbjct: 80  YVCRVNNNFTFEFSQWSQLDVC 101

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 99.1 bits (246), Expect = 5e-24
 Identities = 36/309 (11%), Positives = 73/309 (23%), Gaps = 62/309 (20%)

Query: 15  QPGPAVSLKCIASGNPTPDIGWTLDGFEL--------PTNNRFVIGQFVSGHGDVISHVN 66
           + G  V L C AS   +    W                T     +         +    N
Sbjct: 7   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGN 66

Query: 67  ----ISHVTVEDGGEYACVAENRAGTCEITPYD-----SGPYL----------------- 100
               I ++ +ED   Y C  E++    ++  +          L                 
Sbjct: 67  FPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSP 126

Query: 101 -IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR 159
            +       +        +L ++ +  +D G + C     +    +   ++ +       
Sbjct: 127 SVQCRSPRGKN--IQGGKTLSVSQLELQDSGTWTCTVL-QNQKKVEFKIDIVVLAFQKAS 183

Query: 160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH 219
            I  V   +GE +    P+          EK+    E   +  +                
Sbjct: 184 SI--VYKKEGEQVEFSFPL------AFTVEKLTGSGE-LWWQAERAS------------S 222

Query: 220 GDPPLTIRWLKDGKPL---SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ 276
               +T         +   +    + +         L       A SG  T        +
Sbjct: 223 SKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGK 282

Query: 277 ARYSSKLQV 285
                 L V
Sbjct: 283 LHQEVNLVV 291

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 79.1 bits (194), Expect = 5e-17
 Identities = 34/294 (11%), Positives = 73/294 (24%), Gaps = 58/294 (19%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
             L  G +++L   +    +P +       +     +                +++S + 
Sbjct: 106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQLE 150

Query: 72  VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--SSTSLVINPVGREDR 129
           ++D G + C         E                  +  G     S  L          
Sbjct: 151 LQDSGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGS 210

Query: 130 GIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSI--------------- 174
           G     A R+    +  + +L+   +   R+        G+ L +               
Sbjct: 211 GELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSG 270

Query: 175 --KCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH-GDPPLTIRWLKD 231
                       ++H E     +              +  + C V     P L +    +
Sbjct: 271 NLTL-ALEAKTGKLHQEVNLVVMR---------ATQLQKNLTCEVWGPTSPKLMLSLKLE 320

Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            K                S       V    +G + C+ S+ + Q    S ++V
Sbjct: 321 NKEAKV------------SKREKAVWVLNPEAGMWQCLLSD-SGQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 63.7 bits (154), Expect = 8e-12
 Identities = 19/166 (11%), Positives = 48/166 (28%), Gaps = 26/166 (15%)

Query: 8   SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF-VSGHGDVISHVN 66
           +F  + L     +  +   + +    I + L   E+         +  +     +   + 
Sbjct: 201 AFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLP 260

Query: 67  ISHVTVEDGGEYACVAENRAG--------------------TCEITPYDSGPYLIAWFKD 106
            +       G      E + G                    TCE+    S   +++   +
Sbjct: 261 QALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKLE 320

Query: 107 GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
            ++      S       V   + G++QC+   SD       + +++
Sbjct: 321 NKEAK---VSKREKAVWVLNPEAGMWQCLL--SDSGQVLLESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 43.6 bits (102), Expect = 3e-05
 Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 24/115 (20%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
           V    G+ + + C  +     + HW+                                  
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNS------------------------NQIKILGN 39

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
                 K    L+ R     S  D  +  L I ++    S  Y C   +   + +
Sbjct: 40  QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 94

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 94.8 bits (236), Expect = 5e-24
 Identities = 41/290 (14%), Positives = 79/290 (27%), Gaps = 109/290 (37%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           +          Q  + G    + C  S +P P + W     E+ T +        +    
Sbjct: 1   SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANN--- 57

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
              ++ I ++   D G Y C     A                                  
Sbjct: 58  ---NLQILNINKSDEGIYRCEGRVEAR--------------------------------- 81

Query: 121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCP 177
                               G++      + +   P + +  K    TA  GE ++  C 
Sbjct: 82  --------------------GEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCR 121

Query: 178 VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-- 235
            +G P          P                                I W ++GK +  
Sbjct: 122 ASGSP---------EP-------------------------------AISWFRNGKLIEE 141

Query: 236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           + ++ +  S+     + L++ ++  +  G Y C A+N A +    + LQV
Sbjct: 142 NEKYILKGSN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 186

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 95.4 bits (237), Expect = 1e-23
 Identities = 42/201 (20%), Positives = 61/201 (30%), Gaps = 45/201 (22%)

Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           I+W K+GR+  G         R    SLV+  V   DRG Y C+     G   + +  L 
Sbjct: 47  ISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFG-SIRQTYTLD 105

Query: 152 LGGL-----PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           +             +P   TA+ G  +   C V       + W K               
Sbjct: 106 VLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK--------------- 150

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
                                +   DG P        +S+       L + +VS    GE
Sbjct: 151 --------------HVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGE 196

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y C A+N    A  +  L V 
Sbjct: 197 YLCRATNFIGVAEKAFWLSVH 217

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 77.3 bits (190), Expect = 5e-17
 Identities = 22/96 (22%), Positives = 38/96 (39%), Gaps = 7/96 (7%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT----LDGFELPTNNRFVI---GQF 54
           P +       QT   G  V   C    +  P I W     ++G ++  +    +     +
Sbjct: 114 PILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSW 173

Query: 55  VSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE 90
           +S   +    + +++V+  DGGEY C A N  G  E
Sbjct: 174 ISESVEADVRLRLANVSERDGGEYLCRATNFIGVAE 209

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 71.9 bits (176), Expect = 4e-15
 Identities = 23/80 (28%), Positives = 31/80 (38%), Gaps = 1/80 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P     R  C    G+P  +I WLK+G+       +    L      L + SV  +  G 
Sbjct: 28  PAANTVRFRCPAA-GNPTPSISWLKNGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGN 86

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTCV  N     R +  L V
Sbjct: 87  YTCVVENKFGSIRQTYTLDV 106

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 92.6 bits (230), Expect = 6e-23
 Identities = 33/207 (15%), Positives = 61/207 (29%), Gaps = 43/207 (20%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 139
            C+   +        W  +   +               +L I  V   D+G Y C     
Sbjct: 29  LCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLYIANVEASDKGNYSCFVSSP 88

Query: 140 DGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA 199
               +  S  + L  +P     P                             P  I    
Sbjct: 89  SITKSVFSKFIPLIPIPERTTKP----------------------------YPADIVV-Q 119

Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
           F       G    + C    G+P   IRW K  +P+        +++ +  ++L I ++ 
Sbjct: 120 FKDVYALMGQNVTLECFAL-GNPVPDIRWRKVLEPMPST-----AEISTSGAVLKIFNIQ 173

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
               G Y C A N   + ++ +++ V+
Sbjct: 174 LEDEGIYECEAENIRGKDKHQARIYVQ 200

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 86.1 bits (213), Expect = 2e-20
 Identities = 25/87 (28%), Positives = 36/87 (41%), Gaps = 9/87 (10%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  +   F +     G  V+L+C A GNP PDI W      +P+                
Sbjct: 113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEISTSG-------- 164

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT 88
            + + I ++ +ED G Y C AEN  G 
Sbjct: 165 -AVLKIFNIQLEDEGIYECEAENIRGK 190

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 57.6 bits (139), Expect = 3e-10
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 2/80 (2%)

Query: 207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           EG    ++C   +  P  L+ RWL +  P+            +  +L  I +V A+  G 
Sbjct: 22  EGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNGNLY-IANVEASDKGN 80

Query: 266 YTCVASNTAAQARYSSKLQV 285
           Y+C  S+ +      SK   
Sbjct: 81  YSCFVSSPSITKSVFSKFIP 100

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 91.8 bits (228), Expect = 1e-22
 Identities = 50/296 (16%), Positives = 74/296 (25%), Gaps = 111/296 (37%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            PP +      Q ++ G   S  C A G+P P I W  +G ++                 
Sbjct: 5   HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQS------------ 52

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLV 120
                   +  +E  G                                        + L 
Sbjct: 53  -------RYTVLEQPG--------------------------------------GISILR 67

Query: 121 INPVGR-EDRGIYQCIARRSDGDVAQGSAELQL-------GGLPYVRLIPK-VTAIDGEG 171
           I PV    D   Y+C+A    GD     A L +        G P +   P       G  
Sbjct: 68  IEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHT 127

Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
           + + C   G P          P                                I W+K+
Sbjct: 128 VLMTCKAIGNP---------TP-------------------------------NIYWIKN 147

Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 286
              +    P            L I +      G+Y CVA N+       ++ L VK
Sbjct: 148 QTKVDMSNPRYSLK----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK 199

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 90.7 bits (225), Expect = 2e-22
 Identities = 29/180 (16%), Positives = 52/180 (28%), Gaps = 39/180 (21%)

Query: 11  EQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNR----FVIGQFVSGHGDVISHV 65
             T   G   +L+C        P++ W  DG  L   +       +G+       V+S +
Sbjct: 11  NITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQL 70

Query: 66  NISHVTVEDGGEYACVAENRAGTCE---------------ITPYD--------------- 95
            I+ + + D G+Y C+      T                   P D               
Sbjct: 71  RITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQA 130

Query: 96  SG---PYLIAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
            G   P  + W +D   +           ++  G      + C A  + G     +A + 
Sbjct: 131 QGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATIT 190

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 59.1 bits (143), Expect = 8e-11
 Identities = 15/81 (18%), Positives = 28/81 (34%), Gaps = 9/81 (11%)

Query: 215 CGVTHGDPPLTIRWLKDGKPLSP--------RFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           C +     P  + WL+DG+ L              +  D     S L I S+  + +G+Y
Sbjct: 24  CQLQVQGEPPEVHWLRDGQILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDTGQY 83

Query: 267 TCVASNTAAQA-RYSSKLQVK 286
            C+              + ++
Sbjct: 84  QCLVFLGHQTFVSQPGYVGLE 104

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 55.7 bits (134), Expect = 1e-09
 Identities = 17/89 (19%), Positives = 27/89 (30%), Gaps = 13/89 (14%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
             P       ++T+      +L C A G P P D+ W  D   L T              
Sbjct: 105 GLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPG----------- 153

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGT 88
                 ++    +     ++C A N  G 
Sbjct: 154 -HGPQRSLHVPGLNKTSSFSCEAHNAKGV 181

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 90.3 bits (224), Expect = 3e-22
 Identities = 37/210 (17%), Positives = 63/210 (30%), Gaps = 55/210 (26%)

Query: 88  TCEITPYDSGPYLIAWFK-DGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 136
            C++         I+WF  +G ++               S++L I     +D GIY+C+ 
Sbjct: 23  LCQVAGDAKDKD-ISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVV 81

Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI 195
              DG  ++ +  +++      +  P      +GE   I C V             PP  
Sbjct: 82  TAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSL---------PP-- 130

Query: 196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSI 255
                                        TI W   G+ +  +  V    L   ++ L I
Sbjct: 131 -----------------------------TIIWKHKGRDVILKKDVRFIVLS--NNYLQI 159

Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
             +     G Y C     A        +QV
Sbjct: 160 RGIKKTDEGTYRCEGRILARGEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 79.9 bits (197), Expect = 2e-18
 Identities = 32/197 (16%), Positives = 56/197 (28%), Gaps = 55/197 (27%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTL-DGFELPTNN-RFVIGQFVSGH 58
              +     +  +  G +    C  +G+    DI W   +G +L  N  R  +       
Sbjct: 2   VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDS 61

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAGT------------------------------ 88
             +     I +  ++D G Y CV     GT                              
Sbjct: 62  STLT----IYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGED 117

Query: 89  ----CEIT--PYDSGPYLIAWFKDGRQIPGRTS-------STSLVINPVGREDRGIYQCI 135
               C++        P  I W   GR +  +         +  L I  + + D G Y+C 
Sbjct: 118 AVIVCDVVSSL----PPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCE 173

Query: 136 ARRSDGDVAQGSAELQL 152
            R           ++Q+
Sbjct: 174 GRILARGE-INFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 60.2 bits (146), Expect = 3e-11
 Identities = 22/99 (22%), Positives = 42/99 (42%), Gaps = 6/99 (6%)

Query: 192 PPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSP-RFPVNVSDLDS 248
             +++    P  G +  G     +C V        I W   +G+ LSP +  ++V   D 
Sbjct: 2   VLQVD--IVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDD 59

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK 286
            SS L+I + +   +G Y CV +     Q+  +  +++ 
Sbjct: 60  DSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIF 98

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 90.1 bits (223), Expect = 3e-22
 Identities = 31/207 (14%), Positives = 52/207 (25%), Gaps = 51/207 (24%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP-GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQG 146
           TC +    +      W K G  +                 +  G Y C+          G
Sbjct: 19  TCSLNDSATEVTGHRWLKGGVVLKEDALPGQKTEFKVDSDDQWGEYSCVFLPE----PMG 74

Query: 147 SAELQLGGLPYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           +A +QL G P V+ +       +GE   + C     P                       
Sbjct: 75  TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVP----------------------- 111

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-----LDSFSSLLSINSVS- 259
                           P     W K                         S L I +++ 
Sbjct: 112 ----------------PVTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNM 155

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
            A  G+Y C  +++    +    L+V+
Sbjct: 156 EADPGQYRCNGTSSKGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 62.0 bits (150), Expect = 7e-12
 Identities = 29/198 (14%), Positives = 44/198 (22%), Gaps = 66/198 (33%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTNNRFVIGQFVSGH 58
              + T          G  + L C  + + T   G  W   G  L  +            
Sbjct: 2   AGTVFT-----TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG-------- 48

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------T 88
                       + +  GEY+CV                                     
Sbjct: 49  ----QKTEFKVDSDDQWGEYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLV 104

Query: 89  CEITPYDSGPYLIAWFKDGR--------------QIPGRTSSTSLVINPVGRE-DRGIYQ 133
           C+           AW+K                  +      + L I  +  E D G Y+
Sbjct: 105 CKSESVPP-VTDWAWYKITDSEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYR 163

Query: 134 CIARRSDGDVAQGSAELQ 151
           C    S G   Q    L+
Sbjct: 164 CNGTSSKG-SDQAIITLR 180

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 55.4 bits (133), Expect = 1e-09
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 12/81 (14%)

Query: 207 EGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            G++  + C +      +T  RWLK G  L                       S    GE
Sbjct: 12  LGSKILLTCSLNDSATEVTGHRWLKGGVVLKED--------ALPGQKTEFKVDSDDQWGE 63

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y+CV          ++ +Q+ 
Sbjct: 64  YSCVFLPEPMG---TANIQLH 81

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 93.3 bits (232), Expect = 6e-22
 Identities = 48/266 (18%), Positives = 78/266 (29%), Gaps = 64/266 (24%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT--LDGFELPTNNRFVIGQFVSGHG 59
           P I+      +T      V+L C A G P P+I W   +DGF     ++ + G+      
Sbjct: 2   PHIIQ--LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQ 59

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGT------------------------------- 88
              S ++I  V + D G Y C A +R G                                
Sbjct: 60  HGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPIN 119

Query: 89  --CEITPYDSGPYLIAWFKDGRQIPGRTS----------STSLVINPVGREDRGIYQCIA 136
             C++   +     I W +D   +P + +             L I P    D G Y C A
Sbjct: 120 ISCDVK-SNPPAS-IHWRRDKLVLPAKNTTNLKTYSTGRKMILEIAPTSDNDFGRYNCTA 177

Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIK---------CPVAGYPIE--- 184
             +          L L  +P      K+  +      +           P+  Y ++   
Sbjct: 178 -TNHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNKPDSHGGVPIHHYQVDVKE 236

Query: 185 --EVHWEKVPPKIESFAFPFDGLPEG 208
                W+ V           + L   
Sbjct: 237 VASEIWKIVRSHGVQTMVVLNNLEPN 262

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 54.4 bits (131), Expect = 1e-08
 Identities = 19/87 (21%), Positives = 31/87 (35%), Gaps = 7/87 (8%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------LDSFSSLLSINSVS 259
            E  +  ++C    G+P   I W +     +        D          SS L I  V 
Sbjct: 13  YENGQVTLVCDAE-GEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVK 71

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
            + SG Y C A++     + S  L ++
Sbjct: 72  LSDSGRYDCEAASRIGGHQKSMYLDIE 98

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 92.1 bits (228), Expect = 6e-22
 Identities = 40/340 (11%), Positives = 67/340 (19%), Gaps = 111/340 (32%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPD-----IGWTLDG-------------FELPTNNRFVIG 52
           +     G +V+L C              + W   G                  + R    
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 53  QFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC-------------EITPYDSGPY 99
               G     + + +  + VED G Y C+                     + T       
Sbjct: 69  AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQ 128

Query: 100 L--------------------IAWFKDGRQIPGR-----------TSSTSLVINPVGRED 128
           L                    I W  D   +P             T ++  ++ P  + D
Sbjct: 129 LTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQVD 188

Query: 129 RGIYQCIAR-RSDGDVAQGSAEL--QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEE 185
                C     S       +  L         +        +     ++ C     P   
Sbjct: 189 GKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNP--- 245

Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 245
                                                P    W     PL P        
Sbjct: 246 ------------------------------------EPTGYNWSTTMGPLPPFAVAQ--- 266

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                + L I  V    +    C  +N     +    +QV
Sbjct: 267 ----GAQLLIRPVDKPINTTLICNVTNALGARQAELTVQV 302

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 85.9 bits (212), Expect = 9e-20
 Identities = 35/189 (18%), Positives = 54/189 (28%), Gaps = 43/189 (22%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P  T    +  L   P    +C++  G P   I W  D   +P  ++     F+SG   
Sbjct: 117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVP--GFLSGTVT 174

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE----------------ITPYDSG------- 97
           V S   +   +  DG    C  E+ +                    I+ YD+        
Sbjct: 175 VTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNE 234

Query: 98  ------------PYLIAWFKDGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDV 143
                       P    W      +P         L+I PV +       C    + G  
Sbjct: 235 ATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRPVDKPINTTLICNVTNALG-- 292

Query: 144 AQGSAELQL 152
               AEL +
Sbjct: 293 -ARQAELTV 300

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score = 40.5 bits (94), Expect = 4e-04
 Identities = 17/137 (12%), Positives = 37/137 (27%), Gaps = 31/137 (22%)

Query: 156 PYVRLIPKVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIESFAF-PFDGLPEGA 209
             V+   +V    G+ +++ C +         + ++ W +         F    G     
Sbjct: 2   VVVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSE 61

Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCV 269
             R+                         F       +  ++ L +  +     G YTC+
Sbjct: 62  SKRL------------------------EFVAARLGAELRNASLRMFGLRVEDEGNYTCL 97

Query: 270 ASNTAAQARYSS-KLQV 285
                  +R     L+V
Sbjct: 98  FVTFPQGSRSVDIWLRV 114

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 91.3 bits (226), Expect = 7e-22
 Identities = 45/319 (14%), Positives = 78/319 (24%), Gaps = 95/319 (29%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSG 57
           TPP L      + L+     ++ C   G        +   L    L           V+ 
Sbjct: 5   TPPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--------VTY 53

Query: 58  HGDVISHVNISHVTVEDGG--EYACVAENRAGTCE--------------ITPYD------ 95
             D  S      VT ED G     C       + E              +          
Sbjct: 54  GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG 113

Query: 96  -------SGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRS-DGDVAQGS 147
                            +G           L++     ++   + C A     G +   +
Sbjct: 114 TEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKN 173

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG-LP 206
              +L                                 V      P+++    P +   P
Sbjct: 174 QTREL--------------------------------RVL---YGPRLDERDCPGNWTWP 198

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           E ++   +C    G+P   ++ LKDG    P              +    +V+    G Y
Sbjct: 199 ENSQQTPMC-QAWGNPLPELKCLKDGTFPLP--------------IGESVTVTRDLEGTY 243

Query: 267 TCVASNTAAQARYSSKLQV 285
            C A +T  +      + V
Sbjct: 244 LCRARSTQGEVTREVTVNV 262

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 42.3 bits (99), Expect = 8e-05
 Identities = 14/97 (14%), Positives = 29/97 (29%), Gaps = 8/97 (8%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSF 249
           PP++ S       L    +  V+C +    P     +      + L+P      +D  S 
Sbjct: 6   PPQLVSPRV----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT-VTYGNDSFSA 60

Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            + +S+       +   TC              + + 
Sbjct: 61  KASVSVT-AEDEGTQRLTCAVILGNQSQETLQTVTIY 96

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 92.1 bits (228), Expect = 1e-21
 Identities = 39/357 (10%), Positives = 70/357 (19%), Gaps = 123/357 (34%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTN----------- 46
           P  +           G  V L C  +          + W         N           
Sbjct: 14  PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVS 73

Query: 47  ------NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG------------- 87
                  R    +     G     + +S + +ED G Y C                    
Sbjct: 74  VLAPYRERVEFLRPSFTDG----TIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMA 129

Query: 88  --------------------------TCEITPYDSGPYLIAWFKDGRQIP---------G 112
                                     TC  +     P +++W    +            G
Sbjct: 130 KPTNWIEGTQAVLRAKKGQDDKVLVATCT-SANGKPPSVVSWETRLKGEAEYQEIRNPNG 188

Query: 113 RTSSTS-LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK--VTAIDG 169
             +  S   + P     +    CI         + S  L +   P V +        +  
Sbjct: 189 TVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEGFDGNWYLQR 247

Query: 170 EGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL 229
             + + C     P                                       P     W 
Sbjct: 248 MDVKLTCKADANP---------------------------------------PATEYHWT 268

Query: 230 KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                L               +L     ++ + +G Y C A+N         ++ + 
Sbjct: 269 TLNGSLPKGVEA------QNRTLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT 319

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score = 42.0 bits (98), Expect = 1e-04
 Identities = 19/145 (13%), Positives = 40/145 (27%), Gaps = 29/145 (20%)

Query: 143 VAQGSAELQLGGLP--YVRLIPKVTAIDGEGLSIKC----PVAGYPIEEVHWEKVPPKIE 196
           +A  +   Q+G  P   V++   +    G  + + C    P+    I +V W+K     +
Sbjct: 1   MASMTGGQQMGRDPSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSK 60

Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
                ++                         +    P   R           +  + ++
Sbjct: 61  QNVAIYNPSMG---------------------VSVLAPYRERVEFLRPSFTDGT--IRLS 97

Query: 257 SVSAAHSGEYTCVASNTAAQARYSS 281
            +     G Y C  +      R S 
Sbjct: 98  RLELEDEGVYICEFATFPTGNRESQ 122

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 89.6 bits (222), Expect = 1e-21
 Identities = 38/201 (18%), Positives = 62/201 (30%), Gaps = 46/201 (22%)

Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           + W K+G++            R    SL++  V   D+G Y C+     G     +  L 
Sbjct: 51  MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 109

Query: 152 LGGLPYVRLI-----PK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
           +      R I     P   + + G  +   C V       + W K               
Sbjct: 110 VVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK--------------- 154

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
                                ++  DG P       +  +  +   L  + +V+ A +GE
Sbjct: 155 --------------HVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLA-LFNVTEADAGE 199

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y C  SN   QA  S+ L V 
Sbjct: 200 YICKVSNYIGQANQSAWLTVL 220

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 87.3 bits (216), Expect = 1e-20
 Identities = 39/194 (20%), Positives = 52/194 (26%), Gaps = 60/194 (30%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
             +     V  +C A GNP P + W  +G E    +R    +  + H  +I    +  V 
Sbjct: 29  HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVV 84

Query: 72  VEDGGEYACVAENRAGTCEIT-------PYDSGPYL------------------------ 100
             D G Y CV EN  G+   T            P L                        
Sbjct: 85  PSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYS 144

Query: 101 -----IAWFKDGRQIPGRTSST-------------------SLVINPVGREDRGIYQCIA 136
                I W K   +   +                        L +  V   D G Y C  
Sbjct: 145 DAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKV 204

Query: 137 RRSDGDVAQGSAEL 150
               G  A  SA L
Sbjct: 205 SNYIG-QANQSAWL 217

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 73.0 bits (179), Expect = 1e-15
 Identities = 22/81 (27%), Positives = 33/81 (40%), Gaps = 1/81 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P     +  C    G+P  T+RWLK+GK       +    + +    L + SV  +  G 
Sbjct: 32  PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 90

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTCV  N      ++  L V 
Sbjct: 91  YTCVVENEYGSINHTYHLDVV 111

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 66.5 bits (162), Expect = 3e-13
 Identities = 16/97 (16%), Positives = 28/97 (28%), Gaps = 6/97 (6%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN------RFVIGQFV 55
           P +        +   G  V   C    +  P I W     +  +           + +  
Sbjct: 118 PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHS 177

Query: 56  SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             +      + + +VT  D GEY C   N  G    +
Sbjct: 178 GINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQS 214

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 88.2 bits (218), Expect = 3e-21
 Identities = 44/269 (16%), Positives = 74/269 (27%), Gaps = 73/269 (27%)

Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
           G    L C  + +P       ++    P++N+ V    +   GD I              
Sbjct: 15  GETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPD------- 67

Query: 77  EYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIA 136
                 + R                           ++   S+ +  +   D G YQC  
Sbjct: 68  -----LKGRVHFTSNDV-------------------KSGDASINVTNLQLSDIGTYQCKV 103

Query: 137 RRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE 196
           +     VA     L       V + P  T         +C V G                
Sbjct: 104 K-KAPGVANKKFLLT------VLVKPSGT---------RCFVDGSEEI------------ 135

Query: 197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSIN 256
                      G   ++ C    G  PL   W K     +   P      +  S ++S+ 
Sbjct: 136 -----------GNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLA---EMTSPVISVK 181

Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           + S+ +SG Y+C   N     +   +L V
Sbjct: 182 NASSEYSGTYSCTVQNRVGSDQCMLRLDV 210

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 56.2 bits (135), Expect = 1e-09
 Identities = 16/88 (18%), Positives = 30/88 (34%), Gaps = 8/88 (9%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P  T  F++ + + G    LKC    G+      W            ++          
Sbjct: 121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWL---AEMTSPV 177

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
           +     + + + E  G Y+C  +NR G+
Sbjct: 178 IS----VKNASSEYSGTYSCTVQNRVGS 201

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 44.3 bits (104), Expect = 1e-05
 Identities = 18/126 (14%), Positives = 35/126 (27%), Gaps = 21/126 (16%)

Query: 164 VTAIDGEGLSIKCPVAGYPIE----EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH 219
           +    GE   + C     P +    ++ W   P   +               +VI   + 
Sbjct: 10  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQI------------VDQVIILYSG 57

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
                       G     R     +D+ S  + +++ ++  +  G Y C        A  
Sbjct: 58  DKIYDNYYPDLKG-----RVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 112

Query: 280 SSKLQV 285
              L V
Sbjct: 113 KFLLTV 118

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 85.3 bits (211), Expect = 2e-20
 Identities = 30/200 (15%), Positives = 52/200 (26%), Gaps = 55/200 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
           TC+          I WF +G  IP  T +           D G Y C   ++        
Sbjct: 25  TCQGAR-SPESDSIQWFHNGNLIP--THTQPSYRFKANNNDSGEYTCQTGQTSL---SDP 78

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
             L +     V   P +   +GE + ++C                               
Sbjct: 79  VHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDK------------------------- 113

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
                         P + + + ++GK                    SI   + +HSG+Y 
Sbjct: 114 --------------PLVKVTFFQNGKSQKFS---------HLDPTFSIPQANHSHSGDYH 150

Query: 268 CVASNTAAQARYSS-KLQVK 286
           C  +            + V+
Sbjct: 151 CTGNIGYTLFSSKPVTITVQ 170

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 76.4 bits (188), Expect = 3e-17
 Identities = 24/180 (13%), Positives = 44/180 (24%), Gaps = 47/180 (26%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            +L        +    +V+L C  + +P  D I W  +G  +PT+ +             
Sbjct: 5   AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ------------- 51

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
                       D GEY C     +                                C  
Sbjct: 52  --PSYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLRCH- 108

Query: 92  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           +  D     + +F++G+         +  I        G Y C         +     + 
Sbjct: 109 SWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTIT 168

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 51.0 bits (122), Expect = 4e-08
 Identities = 11/68 (16%), Positives = 20/68 (29%), Gaps = 11/68 (16%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           +     + C         +I+W  +G  +              +        +   SGEY
Sbjct: 18  QEDSVTLTCQGARSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEY 66

Query: 267 TCVASNTA 274
           TC    T+
Sbjct: 67  TCQTGQTS 74

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 44.0 bits (104), Expect = 9e-06
 Identities = 10/89 (11%), Positives = 22/89 (24%), Gaps = 16/89 (17%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHG 59
              +L         Q G  + L+C +  +     + +  +G     ++            
Sbjct: 86  EWLVLQTP--HLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLD---------- 133

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGT 88
                 +I        G+Y C        
Sbjct: 134 ---PTFSIPQANHSHSGDYHCTGNIGYTL 159

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 83.8 bits (206), Expect = 1e-19
 Identities = 31/184 (16%), Positives = 48/184 (26%), Gaps = 27/184 (14%)

Query: 101 IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ-----GSAELQLGG 154
           I WFKDG+ I           +    ++ RG+YQC   ++     Q     GSA+     
Sbjct: 32  ITWFKDGKMIGFLTEDKKKWNLGSNAKDPRGMYQCKGSQNKSKPLQVYYRMGSADDAKKD 91

Query: 155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI 214
                   K  A                 ++   +           P+     G    + 
Sbjct: 92  AAKKDDAKKDDA-----------------KKDGSDGNEEMGGITQTPYKVSISGTTVILT 134

Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
           C      P   I W  + K +           D    L          SG Y C    + 
Sbjct: 135 CPQ---YPGSEILWQHNDKNIGGDEDDKNIGSDE-DHLSLKEFSELEQSGYYVCYPRGSK 190

Query: 275 AQAR 278
            +  
Sbjct: 191 PEDA 194

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 53.7 bits (128), Expect = 8e-09
 Identities = 14/75 (18%), Positives = 21/75 (28%), Gaps = 12/75 (16%)

Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 262
               E     + C          I W KDGK +          L       ++ S +   
Sbjct: 13  YDYQEDGSVLLTCDA----EAKNITWFKDGKMIGF--------LTEDKKKWNLGSNAKDP 60

Query: 263 SGEYTCVASNTAAQA 277
            G Y C  S   ++ 
Sbjct: 61  RGMYQCKGSQNKSKP 75

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 50.3 bits (119), Expect = 1e-07
 Identities = 12/72 (16%), Positives = 19/72 (26%), Gaps = 7/72 (9%)

Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG 76
           G  V L C     P  +I W  +   +  +          G  +    +      +E  G
Sbjct: 128 GTTVILTCPQ--YPGSEILWQHNDKNIGGDEDD----KNIGSDEDHLSL-KEFSELEQSG 180

Query: 77  EYACVAENRAGT 88
            Y C        
Sbjct: 181 YYVCYPRGSKPE 192

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 84.6 bits (208), Expect = 2e-19
 Identities = 41/287 (14%), Positives = 67/287 (23%), Gaps = 62/287 (21%)

Query: 11  EQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
           E  +  G  V L C   +A+    P I W        +   F       G G        
Sbjct: 11  EVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE--- 67

Query: 68  SHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE 127
           S    E  G++                            GR      ++ +L +  V  +
Sbjct: 68  SDSYKESFGDFL---------------------------GRASVANLAAPTLRLTHVHPQ 100

Query: 128 DRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK---------VTAIDGEGLSIKCPV 178
           D G Y C   +       G     +                    V   +G  +++ CP 
Sbjct: 101 DGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPC 160

Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR 238
                  V W   P   E+                    T    PL  +        S  
Sbjct: 161 TDCANANVTWYTGPTFFEN------------------YETGTYQPLANKNQFGITWFSSE 202

Query: 239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                S   + +  L I +     +G   C  +    +        +
Sbjct: 203 IAGRASFSGARN--LVIRAAKITDAGRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 58.0 bits (139), Expect = 4e-10
 Identities = 9/103 (8%), Positives = 23/103 (22%), Gaps = 16/103 (15%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +   +     +  G  +++ C  +     ++ W                   + +   
Sbjct: 136 NNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGTYQPLANKNQFG 195

Query: 62  ISHVN----------------ISHVTVEDGGEYACVAENRAGT 88
           I+  +                I    + D G   C      G 
Sbjct: 196 ITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGE 238

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 87.0 bits (214), Expect = 2e-19
 Identities = 45/340 (13%), Positives = 92/340 (27%), Gaps = 93/340 (27%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW--------------TLDGFELPTNN 47
            P L       T+  G  V++ C                          +          
Sbjct: 112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTG 171

Query: 48  RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT------------------- 88
           R  +   + G G ++  V I+ + + D G+Y C A + + +                   
Sbjct: 172 RIRL--DIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYE 229

Query: 89  ---------CEITPYDSG------------PYLIAWFKDGRQIP---GRTSST------- 117
                    C + P  +                +     G++ P   GR           
Sbjct: 230 DLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGS 289

Query: 118 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL----GGLPYVRLIPKVTAIDGEGL 172
            S+VI  + +ED G Y C A            +             R    V  + G  +
Sbjct: 290 FSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSV 349

Query: 173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG 232
           ++ CP      + + +  +    ++   P     EG       G       L++      
Sbjct: 350 AVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEG------RLSLL----- 398

Query: 233 KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN 272
                       +  + +  + +N +++  +G Y C+ + 
Sbjct: 399 -----------EEPGNGTFTVILNQLTSRDAGFYWCLTNG 427

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 85.1 bits (209), Expect = 8e-19
 Identities = 49/343 (14%), Positives = 80/343 (23%), Gaps = 112/343 (32%)

Query: 15  QPGPAVSLKCIASGNPTPDIGWTLDGFELP-TNNRFVIGQFVSGHGDVISHVNISHVTVE 73
           +        C  S     D+     G   P    R ++             V I+ +  E
Sbjct: 244 EVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDG---SFSVVITGLRKE 300

Query: 74  DGGEYACVAENRAG-------------------------------------TCEITPYDS 96
           D G Y C A +                                         C     +S
Sbjct: 301 DAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKES 360

Query: 97  GPYLIAWFKDGRQIP------------------GRTS--------STSLVINPVGREDRG 130
              +  W                          GR S        + ++++N +   D G
Sbjct: 361 -KSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAG 419

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
            Y C+    D           + G P +++   VTA+ GE L + C              
Sbjct: 420 FYWCLTNG-DTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHF------------ 466

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP------VNVS 244
                          P                    +W   G    P             
Sbjct: 467 ---------------PCKFS---------SYEKYWCKWNNTGCQALPSQDEGPSKAFVNC 502

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS-KLQVK 286
           D +S    L++N V+ A  G Y C           ++  + V+
Sbjct: 503 DENSRLVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE 545

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 77.7 bits (190), Expect = 3e-16
 Identities = 48/353 (13%), Positives = 83/353 (23%), Gaps = 113/353 (32%)

Query: 11  EQTLQPGPAVSLKC---IASGNPTPDIGWTLDG--------------FELPTNNRFVIGQ 53
           E     G +VS+ C     S N      W   G                     R  +  
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 54  FVSGHGDVISHVNISHVTVEDGGEYACVAENRAG-------------------------- 87
           F     +    VNI+ ++ +D G Y C     +                           
Sbjct: 69  F---PENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVD 125

Query: 88  -------TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS---------------------- 118
                   C     ++     + +K     P     +S                      
Sbjct: 126 LGRTVTINCPFKT-ENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTGQLL 184

Query: 119 --LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
             +VIN +   D G Y C A        + +A+LQ+       +   +       ++  C
Sbjct: 185 FSVVINQLRLSDAGQYLCQAGDDSNS-NKKNADLQVLKPEPELVYEDL----RGSVTFHC 239

Query: 177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS 236
            +         +                          C  +       +     GK   
Sbjct: 240 ALGPEVANVAKFL-------------------------CRQS-SGENCDVVVNTLGKRAP 273

Query: 237 P---RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
               R  +N  D D   S++ I  +    +G Y C A +       S     +
Sbjct: 274 AFEGRILLNPQDKDGSFSVV-ITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQ 325

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 63.1 bits (152), Expect = 2e-11
 Identities = 31/249 (12%), Positives = 59/249 (23%), Gaps = 71/249 (28%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGW-----------------TLDGFELPTNNRFVIGQ 53
                 G +V++ C  +   +  I +                 +    +     R  +  
Sbjct: 340 VVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSL-- 397

Query: 54  FVSGHGDVISHVNISHVTVEDGGEYACVAENRAG-------------------------- 87
            +   G+    V ++ +T  D G Y C+                                
Sbjct: 398 -LEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVL 456

Query: 88  ------TCEITPYDSGP--YLIAWFKDGRQIPGRT---------------SSTSLVINPV 124
                  C      S    Y   W   G Q                       SL +N V
Sbjct: 457 GETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLV 516

Query: 125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPV-AGYPI 183
            R D G Y C  ++        +  + +           V+    +    +  + +G+  
Sbjct: 517 TRADEGWYWCGVKQGHFYGETAAVYVAVEERK-AAGSRDVSLAKADAAPDEKVLDSGFRE 575

Query: 184 EEVHWEKVP 192
            E    + P
Sbjct: 576 IENKAIQDP 584

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 79.0 bits (195), Expect = 5e-19
 Identities = 27/87 (31%), Positives = 39/87 (44%), Gaps = 7/87 (8%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          PPI+      QTL       LKC A+G+P P I W  +GF  P  +       +   G +
Sbjct: 8  PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT---IQEQGTL 64

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
               I ++ + D G Y CVA + +G 
Sbjct: 65 Q----IKNLRISDTGTYTCVATSSSGE 87

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 24/83 (28%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 263
           L       + C  T GDP   I WLK+G     R P   + +       L I ++  + +
Sbjct: 20  LAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQE----QGTLQIKNLRISDT 74

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G YTCVA++++ +  +S+ L V 
Sbjct: 75  GTYTCVATSSSGETSWSAVLDVT 97

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 48.9 bits (117), Expect = 5e-08
 Identities = 19/57 (33%), Positives = 24/57 (42%), Gaps = 7/57 (12%)

Query: 101 IAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           I+W K+G   PGR          +L I  +   D G Y C+A  S G     SA L 
Sbjct: 40  ISWLKEGFTFPGRDPRATIQEQGTLQIKNLRISDTGTYTCVATSSSG-ETSWSAVLD 95

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 79.0 bits (195), Expect = 7e-19
 Identities = 16/100 (16%), Positives = 36/100 (36%), Gaps = 9/100 (9%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSD 245
              P I     P           +   V  G+P   ++W  +G  L+        ++V++
Sbjct: 2   HFAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTN 56

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
              +   L +++ +  ++G+YT +A N   +         
Sbjct: 57  HTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 16/77 (20%), Positives = 29/77 (37%)

Query: 16 PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG 75
                +     GNP P + W  +G  L  +        V+ H +    + + + T  + 
Sbjct: 15 SDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNN 74

Query: 76 GEYACVAENRAGTCEIT 92
          G+Y  +A+N  G  E  
Sbjct: 75 GDYTLIAKNEYGKDEKQ 91

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 14/71 (19%)

Query: 101 IAWFKDGRQIP-------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
           + WF +G  +                     L ++     + G Y  IA+   G   +  
Sbjct: 33  LQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYG-KDEKQ 91

Query: 148 AELQLGGLPYV 158
                 G P +
Sbjct: 92  ISAHFMGWPGI 102

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 80.7 bits (199), Expect = 1e-18
 Identities = 24/200 (12%), Positives = 51/200 (25%), Gaps = 55/200 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
            C+   Y        WF +   I   + ++S  I+     D G Y+C    S        
Sbjct: 28  KCQ-GAYSPEDNSTQWFHNESLIS--SQASSYFIDAATVNDSGEYRCQTNLSTL---SDP 81

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
            +L++     +   P+    + + + ++C                               
Sbjct: 82  VQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWK--------------------------- 114

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
                             + +L++GK                +S   I   +   SG Y 
Sbjct: 115 ------------NTALHKVTYLQNGKDRKYF---------HHNSDFHIPKATLKDSGSYF 153

Query: 268 CVASNTAAQARYSS-KLQVK 286
           C     +      +  + + 
Sbjct: 154 CRGLVGSKNVSSETVNITIT 173

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 71.8 bits (176), Expect = 2e-15
 Identities = 22/181 (12%), Positives = 50/181 (27%), Gaps = 47/181 (25%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGD 60
             ++       ++    +V+LKC  + +P  +   W  +   + +               
Sbjct: 7   KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQAS------------ 54

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG------------------------------TCE 90
                 I   TV D GEY C                                      C 
Sbjct: 55  ---SYFIDAATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCH 111

Query: 91  ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
            +  ++  + + + ++G+       ++   I     +D G Y C       +V+  +  +
Sbjct: 112 -SWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNI 170

Query: 151 Q 151
            
Sbjct: 171 T 171

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 47.9 bits (114), Expect = 5e-07
 Identities = 12/68 (17%), Positives = 24/68 (35%), Gaps = 11/68 (16%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           E     + C   +     + +W  +   +S           S +S   I++ +   SGEY
Sbjct: 21  EKDSVTLKCQGAYSPEDNSTQWFHNESLIS-----------SQASSYFIDAATVNDSGEY 69

Query: 267 TCVASNTA 274
            C  + + 
Sbjct: 70  RCQTNLST 77

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 80.7 bits (198), Expect = 1e-18
 Identities = 39/199 (19%), Positives = 67/199 (33%), Gaps = 37/199 (18%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGR-EDRGIYQCIARRSDGDVAQG 146
           TC +   ++    + W K+G+++P       LV+      ED G Y C    S+ +    
Sbjct: 20  TCPLDSDEN----LKWEKNGQELPQ-KHDKHLVLQDFSEVEDSGYYVCYTPASNKNT--- 71

Query: 147 SAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLP 206
                     Y+ L  +V + D               +                  DG  
Sbjct: 72  ----------YLYLKARVGSADDAKKDAAKKDDAKKDDAKKD-GSQTNKAKNLVQVDGSR 120

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
                 + CG+       TI+WLKDG  +SP        L++  +  ++ + +    G Y
Sbjct: 121 GDGSVLLTCGL----TDKTIKWLKDGSIISP--------LNATKNTWNLGNNAKDPRGTY 168

Query: 267 TCVASNTAAQARYSSKLQV 285
            C  +        S+ LQV
Sbjct: 169 QCQGAK-----ETSNPLQV 182

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A Length = 186

 Score = 51.4 bits (122), Expect = 3e-08
 Identities = 30/185 (16%), Positives = 47/185 (25%), Gaps = 71/185 (38%)

Query: 16  PGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VED 74
            G +V L C    +   ++ W  +G ELP  +                H+ +   + VED
Sbjct: 13  SGTSVELTCPL--DSDENLKWEKNGQELPQKHD--------------KHLVLQDFSEVED 56

Query: 75  GGEYACVAEN---------RAGTCEITPYDSGPYL------------------------- 100
            G Y C             +A                                       
Sbjct: 57  SGYYVCYTPASNKNTYLYLKARVGSADDAKKDAAKKDDAKKDDAKKDGSQTNKAKNLVQV 116

Query: 101 -------------------IAWFKDGRQI-PGRTSSTSLVINPVGREDRGIYQCIARRSD 140
                              I W KDG  I P   +  +  +    ++ RG YQC   +  
Sbjct: 117 DGSRGDGSVLLTCGLTDKTIKWLKDGSIISPLNATKNTWNLGNNAKDPRGTYQCQGAKET 176

Query: 141 GDVAQ 145
            +  Q
Sbjct: 177 SNPLQ 181

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 78.9 bits (194), Expect = 1e-18
 Identities = 23/100 (23%), Positives = 36/100 (36%), Gaps = 8/100 (8%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFV--------IG 52
                  + + Q    G +V L C A G+P P+I W  +G         +        + 
Sbjct: 20  HMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVH 79

Query: 53  QFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
              + H    S ++I  +  ED G Y C A N      +T
Sbjct: 80  IHATYHQHAASTISIDTLVEEDTGTYECRASNDPDRNHLT 119

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 59.3 bits (143), Expect = 3e-11
 Identities = 19/93 (20%), Positives = 36/93 (38%), Gaps = 13/93 (13%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------------RFPVNVSDLDSFSSLL 253
             G    + C    G P   I+W  +G+  +             R  ++ +     +S +
Sbjct: 34  WVGGSVELHCEAV-GSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYHQHAASTI 92

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           SI+++    +G Y C ASN   +   +   +VK
Sbjct: 93  SIDTLVEEDTGTYECRASNDPDRNHLTRAPRVK 125

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 77.9 bits (192), Expect = 2e-18
 Identities = 23/81 (28%), Positives = 33/81 (40%), Gaps = 4/81 (4%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +     V  +C A GNP P + W  +G E    +R    +  + H  +I    +  V 
Sbjct: 18 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLI----MESVV 73

Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D G Y CV EN  G+   T
Sbjct: 74 PSDKGNYTCVVENEYGSINHT 94

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 73.2 bits (180), Expect = 8e-17
 Identities = 22/80 (27%), Positives = 33/80 (41%), Gaps = 1/80 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P     +  C    G+P  T+RWLK+GK       +    + +    L + SV  +  G 
Sbjct: 21  PAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGN 79

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTCV  N      ++  L V
Sbjct: 80  YTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 45.5 bits (108), Expect = 8e-07
 Identities = 13/60 (21%), Positives = 22/60 (36%), Gaps = 10/60 (16%)

Query: 101 IAWFKDGRQIPG---------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           + W K+G++            R    SL++  V   D+G Y C+     G     +  L 
Sbjct: 40  MRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYG-SINHTYHLD 98

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 77.8 bits (192), Expect = 2e-18
 Identities = 26/89 (29%), Positives = 37/89 (41%), Gaps = 7/89 (7%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +T +   QT   G ++ + C ASGNP P I W  D   L  ++  V+          
Sbjct: 10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLKDGNRN---- 65

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
             + I  V  ED G Y C A +  G  +
Sbjct: 66 ---LTIRRVRKEDEGLYTCQACSVLGCAK 91

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 70.4 bits (173), Expect = 1e-15
 Identities = 25/101 (24%), Positives = 37/101 (36%), Gaps = 11/101 (10%)

Query: 189 EKVPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSD 245
           E+V P I       +     G    V C  + G+PP  I W KD + L            
Sbjct: 7   ERVAPTITGN--LENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGI-----V 58

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           L   +  L+I  V     G YTC A +    A+  +   ++
Sbjct: 59  LKDGNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 49.3 bits (118), Expect = 5e-08
 Identities = 18/62 (29%), Positives = 26/62 (41%), Gaps = 7/62 (11%)

Query: 101 IAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
           I WFKD   +        +  + +L I  V +ED G+Y C A    G  A+  A   + G
Sbjct: 42  IMWFKDNETLVEDSGIVLKDGNRNLTIRRVRKEDEGLYTCQACSVLG-CAKVEAFFIIEG 100

Query: 155 LP 156
             
Sbjct: 101 AQ 102

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 79.2 bits (195), Expect = 3e-18
 Identities = 29/180 (16%), Positives = 49/180 (27%), Gaps = 47/180 (26%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P ++ +     +  G  V+L C  +         W  +G      N              
Sbjct: 5   PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN-------------- 50

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
            S +NI +   ED GEY C  +                                   C  
Sbjct: 51  -SSLNIVNAKFEDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCH- 108

Query: 92  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
              +   Y + ++KDG  +     + ++ I     ED G Y C  +    D       + 
Sbjct: 109 GWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNIT 168

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 76.9 bits (189), Expect = 3e-17
 Identities = 28/200 (14%), Positives = 53/200 (26%), Gaps = 55/200 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
           TC             WF +G       +++SL I     ED G Y+C  ++ +       
Sbjct: 25  TCN-GNNFFEVSSTKWFHNGSLSE--ETNSSLNIVNAKFEDSGEYKCQHQQVNESEP--- 78

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
             L++     +        ++G+ L ++C                               
Sbjct: 79  VYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWR--------------------------- 111

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
                             + + KDG+ L   +          +  +SI + +   SG Y 
Sbjct: 112 ------------NWDVYKVIYYKDGEALKYWYE---------NHNISITNATVEDSGTYY 150

Query: 268 CVASNTAAQARYSS-KLQVK 286
           C               + V 
Sbjct: 151 CTGKVWQLDYESEPLNITVI 170

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 50.7 bits (121), Expect = 6e-08
 Identities = 17/85 (20%), Positives = 30/85 (35%), Gaps = 12/85 (14%)

Query: 191 VPPKIE-SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
           VP K + S   P++ + +G    + C   +     + +W  +G                 
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSE-----------ET 49

Query: 250 SSLLSINSVSAAHSGEYTCVASNTA 274
           +S L+I +     SGEY C      
Sbjct: 50  NSSLNIVNAKFEDSGEYKCQHQQVN 74

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 41.0 bits (96), Expect = 1e-04
 Identities = 17/89 (19%), Positives = 30/89 (33%), Gaps = 16/89 (17%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
              +L  S   + +  G  + L+C    N     + +  DG  L                
Sbjct: 86  DWLLLQAS--AEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE----------- 132

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGT 88
               +++I++ TVED G Y C  +     
Sbjct: 133 --NHNISITNATVEDSGTYYCTGKVWQLD 159

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 82.6 bits (203), Expect = 5e-18
 Identities = 45/325 (13%), Positives = 76/325 (23%), Gaps = 104/325 (32%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
           P         + L+     ++ C   G        +   L    L           V+  
Sbjct: 188 PATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPT--------VTYG 239

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
            D  S      VT ED G          G                               
Sbjct: 240 NDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGT 299

Query: 88  ----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR-RSDGD 142
                CE  P       +       Q  G      L++     ++   + C A     G 
Sbjct: 300 EVTVKCEAHPRAK----VTLNGVPAQPLG--PRAQLLLKATPEDNGRSFSCSATLEVAGQ 353

Query: 143 VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
           +   +   +L                                 V      P+++    P 
Sbjct: 354 LIHKNQTREL--------------------------------RVL---YGPRLDERDCPG 378

Query: 203 DG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAA 261
           +   PE ++   +C    G+P   ++ LKDG    P              +    +V+  
Sbjct: 379 NWTWPENSQQTPMCQAW-GNPLPELKCLKDGTFPLP--------------IGESVTVTRD 423

Query: 262 HSGEYTCVASNTAAQARYSSKLQVK 286
             G Y C A +T  +      + V 
Sbjct: 424 LEGTYLCRARSTQGEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 70.7 bits (172), Expect = 5e-14
 Identities = 35/320 (10%), Positives = 77/320 (24%), Gaps = 90/320 (28%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           +  L  G +V + C  S +    +G      E P   + ++       G+      +S+V
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGI-----ETPLPKKELLLP-----GNNRKVYELSNV 57

Query: 71  TVEDGGEYACVAENRAGTC---------------EITPYDSGPYL--------------- 100
              +  +  C +    G                 E+ P  S   +               
Sbjct: 58  Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115

Query: 101 -----IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
                +   +  +++         +  +  +          + C                
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTE------------- 162

Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
                           +  +GL +    +     +     V P           L    +
Sbjct: 163 --------------LDLRPQGLELFENTSAPYQLQTF---VLPATPPQLVSPRVLEVDTQ 205

Query: 211 TRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY-- 266
             V+C +    P     +      + L+P     V+  +   S  +  SV+A   G    
Sbjct: 206 GTVVCSLDGLFPVSEAQVHLALGDQRLNP----TVTYGNDSFSAKASVSVTAEDEGTQRL 261

Query: 267 TCVASNTAAQARYSSKLQVK 286
           TC              + + 
Sbjct: 262 TCAVILGNQSQETLQTVTIY 281

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 65.7 bits (159), Expect = 3e-12
 Identities = 39/306 (12%), Positives = 71/306 (23%), Gaps = 50/306 (16%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKC-IASGNPTPD--IGWTLDGFELPTNNRFVIGQFVSGH 58
           P  +  + +      G  ++L+C +  G P  +  +       EL               
Sbjct: 86  PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAV--------G 137

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAGT--CEITPYDSGPYLIAWFKDGRQIPGRTSS 116
                   +       G  ++C  E        E+    S PY +  F      P   S 
Sbjct: 138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSP 197

Query: 117 TSLVINPVGREDRGIYQCIA-----------RRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
             L       + +G   C               + GD                +    VT
Sbjct: 198 RVLE-----VDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVT 252

Query: 166 AIDGEGLSIKCPVAGYPIEEVHWE-----KVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
           A D     + C       +             P           + EG    V C   H 
Sbjct: 253 AEDEGTQRLTC-AVILGNQSQETLQTVTIYSFPAPNVILTK-PEVSEGTEVTVKCEA-HP 309

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
              +T+  +                     + L + +    +   ++C A+   A     
Sbjct: 310 RAKVTLNGVPAQPLGPR-------------AQLLLKATPEDNGRSFSCSATLEVAGQLIH 356

Query: 281 SKLQVK 286
                +
Sbjct: 357 KNQTRE 362

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 79.5 bits (195), Expect = 1e-17
 Identities = 39/292 (13%), Positives = 79/292 (27%), Gaps = 69/292 (23%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCI---ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
            P LT S  +  +  G +V + C+           + W     +   +   +        
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFY------ 58

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSST- 117
                                              Y +       F++   + G T    
Sbjct: 59  -----------------------------------YSNLSVPTGRFQNRSHLVGDTFHND 83

Query: 118 -SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKC 176
            SL++  V + D GIY C  R    +       ++L  LP       +    G+   ++C
Sbjct: 84  GSLLLQDVQKADEGIYTCEIR-LKNESMVMKKPVELWVLPEE--PRDLRVRVGDTTQMRC 140

Query: 177 PVAGYP---IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 233
            +       + +V+W                  E                 ++   ++  
Sbjct: 141 SIQSTEEKRVTKVNWMFSSG----------SHTEEETVLSYDSNMRSGKFQSLGRFRNRV 190

Query: 234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            L+        D+      + + +V  +  G YTC       ++R +  L V
Sbjct: 191 DLT-------GDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 43.3 bits (101), Expect = 3e-05
 Identities = 21/142 (14%), Positives = 38/142 (26%), Gaps = 35/142 (24%)

Query: 154 GLPYVRLIPK-VTAIDGEGLSIKCPV---AGYPIEEVHWEKVPPKIESFAFPFDGLPEGA 209
           GLP + +    +    GE + + C V       ++ V W     K               
Sbjct: 4   GLPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDK--------------- 48

Query: 210 RTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVSAAHSG 264
                           + +  +    + RF      V  +  +  S  L +  V  A  G
Sbjct: 49  ---------DDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS--LLLQDVQKADEG 97

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
            YTC              +++ 
Sbjct: 98  IYTCEIRLKNESMVMKKPVELW 119

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 75.5 bits (186), Expect = 2e-17
 Identities = 29/89 (32%), Positives = 41/89 (46%), Gaps = 4/89 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P    +  + T+Q G    + C  SG PTPD+ W LDG  +  ++   +    +G   +
Sbjct: 9  RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSL 68

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
          I    I  VT  D G Y C+A NRAG   
Sbjct: 69 I----IEPVTSRDAGIYTCIATNRAGQNS 93

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 69.3 bits (170), Expect = 3e-15
 Identities = 27/81 (33%), Positives = 41/81 (50%), Gaps = 1/81 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG   R+ C V+ G P   + W  DGKP+ P     +   ++    L I  V++  +G 
Sbjct: 22  QEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGI 80

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTC+A+N A Q  +S +L V 
Sbjct: 81  YTCIATNRAGQNSFSLELVVA 101

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 79.8 bits (196), Expect = 2e-17
 Identities = 31/198 (15%), Positives = 48/198 (24%), Gaps = 49/198 (24%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P L       ++  G  V L+C   G      GW L   E        + +       
Sbjct: 157 GVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT----VMKSGGLPSL 212

Query: 61  VISHVNISHVTVEDGGEYACVAENRAG--------------------------TCEITPY 94
            ++  N+   +  +     C AEN  G                           C     
Sbjct: 213 GLTLANV--TSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLHTAVEMHHWCIPFSV 270

Query: 95  DSGPY-LIAWFKDGRQIPGRTSST---------------SLVINPVGREDRGIYQCIARR 138
           D  P   + W  +G  +   +                   L +N     + G Y  +A  
Sbjct: 271 DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN 330

Query: 139 SDGDVAQGSAELQLGGLP 156
             G  A  S        P
Sbjct: 331 PFG-QASASIMAAFMDNP 347

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 68.6 bits (167), Expect = 2e-13
 Identities = 33/199 (16%), Positives = 55/199 (27%), Gaps = 57/199 (28%)

Query: 101 IAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
             W     +            S    + N     +R    C A    G  A+ S ++ + 
Sbjct: 190 AGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGR-AEVSVQVNVS 248

Query: 154 GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
               V+L    TA++     I   V                                   
Sbjct: 249 FPASVQLH---TAVEMHHWCIPFSV----------------------------------- 270

Query: 214 ICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
                 G P  ++RWL +G  L+        F    ++       L +N  +  ++G YT
Sbjct: 271 -----DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT 325

Query: 268 CVASNTAAQARYSSKLQVK 286
            +A+N   QA  S      
Sbjct: 326 LLAANPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 56.3 bits (135), Expect = 3e-09
 Identities = 18/82 (21%), Positives = 26/82 (31%), Gaps = 3/82 (3%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +  G    + C V  G       W+      S    +    L S   L   N  S  +  
Sbjct: 170 VDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATV-MKSGGLPS-LGLTLANVTSDLNRK 226

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
             TC A N   +A  S ++ V 
Sbjct: 227 NVTCWAENDVGRAEVSVQVNVS 248

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 74.7 bits (184), Expect = 3e-17
 Identities = 22/89 (24%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +       T+  G +    C   G P P + W   G  L T+ R  +          
Sbjct: 14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKST-- 71

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
               IS V   D G Y+ V EN  G  E
Sbjct: 72 ---FEISSVQASDEGNYSVVVENSEGKQE 97

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 23/81 (28%), Positives = 36/81 (44%), Gaps = 2/81 (2%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG   R  C    G+P  T+ WL+ G+ LS      V+     S+   I+SV A+  G 
Sbjct: 27  YEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFE-ISSVQASDEGN 84

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y+ V  N+  +      L ++
Sbjct: 85  YSVVVENSEGKQEAEFTLTIQ 105

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 11/59 (18%), Positives = 21/59 (35%), Gaps = 9/59 (15%)

Query: 101 IAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           + W + G+ +    R         ++  I+ V   D G Y  +   S+G   +    L 
Sbjct: 46  VTWLRKGQVLSTSARHQVTTTKYKSTFEISSVQASDEGNYSVVVENSEG-KQEAEFTLT 103

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 74.2 bits (183), Expect = 3e-17
 Identities = 18/90 (20%), Positives = 32/90 (35%), Gaps = 5/90 (5%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          + P++     + T+           A+G P P   WT DG  +    ++ + +       
Sbjct: 5  SKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE-----DK 59

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
              + I      D G Y C  +N AG+  
Sbjct: 60 GGFFLEIHKTDTSDSGLYTCTVKNSAGSVS 89

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 24/83 (28%), Positives = 35/83 (42%), Gaps = 6/83 (7%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
              +  +     T G+P  T  W KDGK +    ++ +   D   F   L I+    + S
Sbjct: 19  SSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKL-SEDKGGFF--LEIHKTDTSDS 74

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G YTC   N+A     S KL +K
Sbjct: 75  GLYTCTVKNSAGSVSSSCKLTIK 97

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 74.1 bits (182), Expect = 4e-17
 Identities = 21/87 (24%), Positives = 31/87 (35%), Gaps = 10/87 (11%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P  +        + PG  + L+C         I W  DG +L  +NR  I          
Sbjct: 9  PWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLRDGVQLVESNRTRITG-------- 59

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
             V +      D G YACV  + +G+
Sbjct: 60 -EEVEVRDSIPADSGLYACVTSSPSGS 85

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 63.7 bits (155), Expect = 2e-13
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 7/81 (8%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +  G   ++ C +   D   +I WL+DG  L       ++        + +     A SG
Sbjct: 21  VHPGDLLQLRCRLR--DDVQSINWLRDGVQLVESNRTRITG-----EEVEVRDSIPADSG 73

Query: 265 EYTCVASNTAAQARYSSKLQV 285
            Y CV S+ +        + V
Sbjct: 74  LYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 47.1 bits (112), Expect = 2e-07
 Identities = 11/45 (24%), Positives = 18/45 (40%), Gaps = 4/45 (8%)

Query: 101 IAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSDG 141
           I W +DG Q+      R +   + +      D G+Y C+     G
Sbjct: 40  INWLRDGVQLVESNRTRITGEEVEVRDSIPADSGLYACVTSSPSG 84

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 76.7 bits (188), Expect = 5e-17
 Identities = 31/201 (15%), Positives = 52/201 (25%), Gaps = 54/201 (26%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
               Q G +VSL C  +G  +P   W     + P N +         +    S + ++ V
Sbjct: 10  RYLAQIGDSVSLTCSTTGCESPFFSW-RTQIDSPLNGKVT-------NEGTTSTLTMNPV 61

Query: 71  TVEDGGEYACVAENRAG---------------------------------TCEITPYDSG 97
           +  +   Y C A   +                                   C +      
Sbjct: 62  SFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPF 121

Query: 98  PYL-IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA 144
             L I   K    +               T S  +   PV  +   +  C A+    ++ 
Sbjct: 122 DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEMD 181

Query: 145 QGSAELQLGGLPYVRLIPKVT 165
                 Q      V + PK T
Sbjct: 182 SVPTVRQAVKELQVYISPKNT 202

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 62.1 bits (150), Expect = 7e-12
 Identities = 26/191 (13%), Positives = 52/191 (27%), Gaps = 47/191 (24%)

Query: 101 IAWFKD-----GRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL 155
            +W          ++    ++++L +NPV   +   Y C A        +   ++++   
Sbjct: 33  FSWRTQIDSPLNGKVTNEGTTSTLTMNPVSFGNEHSYLCTATCESR-KLEKGIQVEIYSF 91

Query: 156 PYVRLIPK-VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI 214
           P    I        G+ +++KC VA           V P                     
Sbjct: 92  PKDPEIHLSGPLEAGKPITVKCSVAD----------VYPF-------------------- 121

Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRF---PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS 271
                    L I  LK    +  +      +   L++ S  ++   V         C A 
Sbjct: 122 -------DRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAK 174

Query: 272 NTAAQARYSSK 282
               +      
Sbjct: 175 LHIDEMDSVPT 185

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 47.1 bits (111), Expect = 1e-06
 Identities = 15/81 (18%), Positives = 29/81 (35%), Gaps = 7/81 (8%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
             G    + C  T G       W      PL+ +     +      S L++N VS  +  
Sbjct: 14  QIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVTNEGTT-----STLTMNPVSFGNEH 67

Query: 265 EYTCVASNTAAQARYSSKLQV 285
            Y C A+  + +     ++++
Sbjct: 68  SYLCTATCESRKLEKGIQVEI 88

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 45.5 bits (107), Expect = 4e-06
 Identities = 13/96 (13%), Positives = 27/96 (28%), Gaps = 4/96 (4%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGFELPTNNRFVIGQFVSG 57
           + P      +   L+ G  +++KC  +        +I        + +          S 
Sbjct: 90  SFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSL 149

Query: 58  HGDVISHVNISHVTVEDGGEYACVAENRAGTCEITP 93
                  V  + V  + G    C A+      +  P
Sbjct: 150 E-TKSLEVTFTPVIEDIGKVLVCRAKLHIDEMDSVP 184

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 73.1 bits (180), Expect = 8e-17
 Identities = 25/89 (28%), Positives = 37/89 (41%), Gaps = 4/89 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          PP         ++  G    +    SG P PD+ W L+G  + +++   +     G   +
Sbjct: 5  PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSL 64

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
          I       V   D G YACVA+NRAG   
Sbjct: 65 I----FEVVRASDAGAYACVAKNRAGEAT 89

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 71.6 bits (176), Expect = 3e-16
 Identities = 24/83 (28%), Positives = 38/83 (45%), Gaps = 5/83 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EG   R+   V+ G P   + W  +G+ +       + VS+    S  L    V A+ +
Sbjct: 18  DEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHS--LIFEVVRASDA 74

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G Y CVA N A +A ++ +L V 
Sbjct: 75  GAYACVAKNRAGEATFTVQLDVL 97

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 75.7 bits (186), Expect = 1e-16
 Identities = 25/203 (12%), Positives = 53/203 (26%), Gaps = 61/203 (30%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR---RSDGDVA 144
            C+            WF +   I  + SS    I+    +D G Y+C  +    SD    
Sbjct: 28  KCQGAY-SPEDQSTQWFHNESLISSQASS--YFIDAATVDDSGEYRCQTQLSTLSD---- 80

Query: 145 QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDG 204
               +L++     +   P+    + + + ++C                            
Sbjct: 81  --PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNT---------------------- 116

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
                                + +L++GK                +S   I   +   SG
Sbjct: 117 -----------------ALHKVTYLQNGKGRKYF---------HHNSDFYIPKATLKDSG 150

Query: 265 EYTCVASNTAAQARYSS-KLQVK 286
            Y C     +      + ++ + 
Sbjct: 151 SYFCRGLVGSKNVSSETVQITIT 173

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 68.8 bits (168), Expect = 3e-14
 Identities = 24/193 (12%), Positives = 54/193 (27%), Gaps = 47/193 (24%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            ++        +    +V+LKC  + +P      W  +   + +                
Sbjct: 8   AVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQAS------------- 54

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG------------------------------TCEI 91
                I   TV+D GEY C  +                                   C  
Sbjct: 55  --SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHLRCH- 111

Query: 92  TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           +  ++  + + + ++G+       ++   I     +D G Y C       +V+  + ++ 
Sbjct: 112 SWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQIT 171

Query: 152 LGGLPYVRLIPKV 164
           +     V  I   
Sbjct: 172 ITQGLAVSTISSF 184

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 45.3 bits (107), Expect = 6e-06
 Identities = 12/67 (17%), Positives = 23/67 (34%), Gaps = 11/67 (16%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           E     + C   +     + +W  +   +S           S +S   I++ +   SGEY
Sbjct: 21  EKDSVTLKCQGAYSPEDQSTQWFHNESLIS-----------SQASSYFIDAATVDDSGEY 69

Query: 267 TCVASNT 273
            C    +
Sbjct: 70  RCQTQLS 76

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 75.0 bits (184), Expect = 1e-16
 Identities = 29/271 (10%), Positives = 57/271 (21%), Gaps = 101/271 (37%)

Query: 15  QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED 74
           + G  V L C AS   +    W          N+   G F++     ++    S  ++ D
Sbjct: 8   KKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQ---GSFLTKGPSKLNDRADSRRSLWD 64

Query: 75  GGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC 134
            G +                                        L+I  +  ED   Y C
Sbjct: 65  QGNF---------------------------------------PLIIKNLKIEDSDTYIC 85

Query: 135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK 194
                  +V              +        + G+ L++                    
Sbjct: 86  EVEDQKEEVQLLVFG--------LTANSDTHLLQGQSLTLTLES---------------- 121

Query: 195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLS 254
                                         +++                         LS
Sbjct: 122 ------------------------PPGSSPSVQCRSPRGKNIQG-----------GKTLS 146

Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           ++ +    SG +TC       +  +   + V
Sbjct: 147 VSQLELQDSGTWTCTVLQNQKKVEFKIDIVV 177

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 58.5 bits (141), Expect = 1e-10
 Identities = 9/82 (10%), Positives = 25/82 (30%), Gaps = 15/82 (18%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           +  L  G +++L   +    +P +       +     +                +++S +
Sbjct: 106 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGK---------------TLSVSQL 150

Query: 71  TVEDGGEYACVAENRAGTCEIT 92
            ++D G + C         E  
Sbjct: 151 ELQDSGTWTCTVLQNQKKVEFK 172

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 41.5 bits (97), Expect = 7e-05
 Identities = 15/115 (13%), Positives = 28/115 (24%), Gaps = 24/115 (20%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
           V    G+ + + C  +     + HW+                                  
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNS------------------------NQIKILGN 40

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
                 K    L+ R     S  D  +  L I ++    S  Y C   +   + +
Sbjct: 41  QGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICEVEDQKEEVQ 95

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 72.0 bits (177), Expect = 2e-16
 Identities = 16/83 (19%), Positives = 33/83 (39%), Gaps = 5/83 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EG   + +C + + D    + W    + L  S ++   ++  D  + L  +  ++    
Sbjct: 14  EEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKY--EITYEDGVAILY-VKDITKLDD 70

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G Y C   N   +    ++L VK
Sbjct: 71  GTYRCKVVNDYGEDSSYAELFVK 93

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 60.4 bits (147), Expect = 4e-12
 Identities = 14/80 (17%), Positives = 24/80 (30%), Gaps = 6/80 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
             + G  V   C          + W     +L  + ++ I    +    V   + +  +
Sbjct: 11 AVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEI----TYEDGVAI-LYVKDI 65

Query: 71 TVEDGGEYACVAENRAGTCE 90
          T  D G Y C   N  G   
Sbjct: 66 TKLDDGTYRCKVVNDYGEDS 85

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 48.1 bits (115), Expect = 9e-08
 Identities = 20/92 (21%), Positives = 31/92 (33%), Gaps = 17/92 (18%)

Query: 67  ISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPG--------RTSSTS 118
           I H   E+G        +    C+I  YD     + W+   RQ+                
Sbjct: 8   IMHAVGEEG-------GHVKYVCKIENYDQ-STQVTWYFGVRQLENSEKYEITYEDGVAI 59

Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
           L +  + + D G Y+C      G+     AEL
Sbjct: 60  LYVKDITKLDDGTYRCKVVNDYGE-DSSYAEL 90

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 71.9 bits (177), Expect = 2e-16
 Identities = 17/89 (19%), Positives = 29/89 (32%), Gaps = 5/89 (5%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +T       +  G            PT ++ W  +G EL  +++            V
Sbjct: 8  APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN----TSGV 63

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
          ++ + I     +D G Y  V  N  G   
Sbjct: 64 LT-LEILDCHTDDSGTYRAVCTNYKGEAS 91

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 66.6 bits (163), Expect = 3e-14
 Identities = 21/83 (25%), Positives = 32/83 (38%), Gaps = 6/83 (7%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
           P G  TR I  V    P   ++W  +G  L  S +   + ++     +L  I       S
Sbjct: 21  PCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKI--HYTNTSGVLTLE-ILDCHTDDS 76

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G Y  V +N   +A   + L V 
Sbjct: 77  GTYRAVCTNYKGEASDYATLDVT 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 72.2 bits (177), Expect = 3e-16
 Identities = 26/99 (26%), Positives = 39/99 (39%), Gaps = 8/99 (8%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNV-SDL 246
             PP++ S        PE      I  V  G+PP T+ WL +G+PL  S    V    + 
Sbjct: 6   YYPPRVVSLE-----EPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEG 60

Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           +     L  N  +  ++G YT +A N    A  +     
Sbjct: 61  EISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 64.8 bits (158), Expect = 2e-13
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            ++ +  GNP P + W  +G  L  +    +  +  G       +  +  T  + G Y 
Sbjct: 23 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGC-LLFNKPTHYNNGNYT 81

Query: 80 CVAENRAGTCEIT 92
           +A+N  GT   T
Sbjct: 82 LIAKNPLGTANQT 94

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 42.9 bits (101), Expect = 1e-05
 Identities = 13/69 (18%), Positives = 22/69 (31%), Gaps = 13/69 (18%)

Query: 101 IAWFKDGRQIP------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSA 148
           + W  +G+ +             G  S   L+ N     + G Y  IA+   G  A  + 
Sbjct: 37  LHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLG-TANQTI 95

Query: 149 ELQLGGLPY 157
                  P+
Sbjct: 96  NGHFLKEPF 104

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 70.8 bits (174), Expect = 6e-16
 Identities = 20/90 (22%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           PP    S ++Q+++ G  V +     G P P + W  +   +  + R          G 
Sbjct: 4  APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFA---EEAEGG 60

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCE 90
          +   + I      D G Y C A N  G  +
Sbjct: 61 LCR-LRILAAERGDAGFYTCKAVNEYGARQ 89

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 68.5 bits (168), Expect = 4e-15
 Identities = 19/81 (23%), Positives = 35/81 (43%), Gaps = 1/81 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG    +   V  G+P   + WL++ +P+ P       + +     L I +     +G 
Sbjct: 18  REGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGF 76

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           YTC A N     +  ++L+V+
Sbjct: 77  YTCKAVNEYGARQCEARLEVR 97

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 73.5 bits (180), Expect = 7e-16
 Identities = 38/241 (15%), Positives = 61/241 (25%), Gaps = 69/241 (28%)

Query: 70  VTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP------------------ 111
           VT+E          N        P        AW+K                        
Sbjct: 2   VTIEAVPPQVAEDNNVLLLVHNLPLA--LGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQ 59

Query: 112 ---GR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
              GR    S+ SL+   +  +D G+Y       +    Q +    +        +    
Sbjct: 60  AYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTN 119

Query: 166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT 225
               E                                          V       D    
Sbjct: 120 TTVKEL---------------------------------------DSVTLTCLSNDIGAN 140

Query: 226 IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQ 284
           I+WL + + L     + +S     +S+L I+ +    +GEY C  SN  +  R  S KL 
Sbjct: 141 IQWLFNSQSLQLTERMTLS---QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLD 197

Query: 285 V 285
           +
Sbjct: 198 I 198

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 27/171 (15%), Positives = 41/171 (23%), Gaps = 51/171 (29%)

Query: 17  GPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHV--------- 65
              V L             W             RFV    ++  G   S           
Sbjct: 14  DNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNGSL 73

Query: 66  NISHVTVEDGGEYACVAENRAG---------------------------------TCEIT 92
               +T++D G Y     +                                    T    
Sbjct: 74  LFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCL 133

Query: 93  PYDSGPYLIAWFKDGRQIPG------RTSSTSLVINPVGREDRGIYQCIAR 137
             D G   I W  + + +          +++ L I+P+ RED G YQC   
Sbjct: 134 SNDIGAN-IQWLFNSQSLQLTERMTLSQNNSILRIDPIKREDAGEYQCEIS 183

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 18/88 (20%), Positives = 31/88 (35%), Gaps = 8/88 (9%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
                       T++   +V+L C++  +   +I W  +   L    R  +    S +  
Sbjct: 109 PVTQPFLQVTNTTVKELDSVTLTCLS-NDIGANIQWLFNSQSLQLTERMTL----SQNN- 162

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
             S + I  +  ED GEY C   N    
Sbjct: 163 --SILRIDPIKREDAGEYQCEISNPVSV 188

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 70.1 bits (172), Expect = 1e-15
 Identities = 18/88 (20%), Positives = 30/88 (34%), Gaps = 14/88 (15%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          +   +      Q L PG  + L+C+A G+P P   W  +   L    +            
Sbjct: 2  SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK------------ 49

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
                + +V +E  G Y C   N   +
Sbjct: 50 --KLYMVPYVDLEHQGTYWCHVYNDRDS 75

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 60.0 bits (146), Expect = 4e-12
 Identities = 16/70 (22%), Positives = 22/70 (31%), Gaps = 11/70 (15%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           L  G+   + C    G P    +W K+  PL+               L  +  V   H G
Sbjct: 15  LMPGSTLVLQCVAV-GSPIPHYQWFKNELPLT----------HETKKLYMVPYVDLEHQG 63

Query: 265 EYTCVASNTA 274
            Y C   N  
Sbjct: 64  TYWCHVYNDR 73

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 48.5 bits (116), Expect = 6e-08
 Identities = 11/56 (19%), Positives = 18/56 (32%), Gaps = 1/56 (1%)

Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP 156
             WFK+   +   T     ++  V  E +G Y C              E+ +  L 
Sbjct: 35  YQWFKNELPLTHETKKL-YMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIIDELN 89

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.5 bits (173), Expect = 1e-15
 Identities = 22/99 (22%), Positives = 36/99 (36%), Gaps = 7/99 (7%)

Query: 190 KVPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPVNVSDL 246
             PPKI              G +  ++     G P   + W K G PL   R  V  SD 
Sbjct: 19  AEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLDTSRVHVRTSD- 76

Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
             F ++  +   + + SGEY         +   + +++V
Sbjct: 77  --FDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 62.0 bits (151), Expect = 2e-12
 Identities = 21/93 (22%), Positives = 30/93 (32%), Gaps = 8/93 (8%)

Query: 2   PPILTYSFIEQTL--QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
           P I     + QT   + G  ++L     G P P + WT  G  L T+   V         
Sbjct: 22  PKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLDTSRVHVR------TS 75

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           D  +   +      D GEY    +        T
Sbjct: 76  DFDTVFFVRQAARSDSGEYELSVQIENMKDTAT 108

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 11/44 (25%), Positives = 16/44 (36%), Gaps = 7/44 (15%)

Query: 101 IAWFKDGRQIPG-----RTS--STSLVINPVGREDRGIYQCIAR 137
           + W K G  +       RTS   T   +    R D G Y+   +
Sbjct: 56  VVWTKGGAPLDTSRVHVRTSDFDTVFFVRQAARSDSGEYELSVQ 99

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 71.4 bits (175), Expect = 1e-15
 Identities = 21/90 (23%), Positives = 33/90 (36%), Gaps = 4/90 (4%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P  T + ++  +  G A    C   G P P++ W  D   +  +  F I        +
Sbjct: 40  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEE 95

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCE 90
               + IS V  +D  +Y C A N  G   
Sbjct: 96  GNCSLTISEVCGDDDAKYTCKAVNSLGEAT 125

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 67.6 bits (165), Expect = 4e-14
 Identities = 25/83 (30%), Positives = 41/83 (49%), Gaps = 5/83 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EG+  R  C V  G P   + W KD  P+  S  F ++  +  + S  L+I+ V     
Sbjct: 54  VEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS--LTISEVCGDDD 110

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
            +YTC A N+  +A  +++L V+
Sbjct: 111 AKYTCKAVNSLGEATCTAELLVE 133

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 70.2 bits (172), Expect = 1e-15
 Identities = 23/91 (25%), Positives = 40/91 (43%), Gaps = 7/91 (7%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          PP++    + QT+       L C+A+G+P P I W  DG  + T +  +       +G +
Sbjct: 8  PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK---QLENGVL 64

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
               I +  + D G Y C+A   +G    +
Sbjct: 65 Q----IRYAKLGDTGRYTCIASTPSGEATWS 91

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 22/83 (26%), Positives = 39/83 (46%), Gaps = 6/83 (7%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHS 263
           +       + C  T G P  TI W KDG  +S +   +   +    + +L I       +
Sbjct: 20  VAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDT 74

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G YTC+AS  + +A +S+ ++V+
Sbjct: 75  GRYTCIASTPSGEATWSAYIEVQ 97

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 48.6 bits (116), Expect = 1e-07
 Identities = 20/71 (28%), Positives = 27/71 (38%), Gaps = 7/71 (9%)

Query: 101 IAWFKDGRQIPGRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG 154
           I W KDG  +  + S      +  L I      D G Y CIA    G  A  SA +++  
Sbjct: 40  ILWRKDGVLVSTQDSRIKQLENGVLQIRYAKLGDTGRYTCIASTPSG-EATWSAYIEVQE 98

Query: 155 LPYVRLIPKVT 165
                  P+ T
Sbjct: 99  FGVPVQPPRPT 109

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 69.2 bits (170), Expect = 2e-15
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 4/89 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +      QT+  G     +    G P P+  W  +G ++  ++R     +     +V
Sbjct: 5  APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI---YWYWPEDNV 61

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
             + I  VT ED       A N AG   
Sbjct: 62 CE-LVIRDVTGEDSASIMVKAINIAGETS 89

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 67.3 bits (165), Expect = 1e-14
 Identities = 18/83 (21%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            +G+       V  G P     W K+G  +  S R      + +     L I  V+   S
Sbjct: 18  GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCE--LVIRDVTGEDS 74

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
                 A N A +    + L V+
Sbjct: 75  ASIMVKAINIAGETSSHAFLLVQ 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 69.8 bits (171), Expect = 2e-15
 Identities = 22/89 (24%), Positives = 31/89 (34%), Gaps = 2/89 (2%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF--VSGHG 59
          PP +     +  +  G   +L C A G PTP I W   G  + T+          +    
Sbjct: 9  PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGS 68

Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
               +     +  D G Y CVA N  G 
Sbjct: 69 LFFLRIVHGRKSRPDEGVYVCVARNYLGE 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 54.4 bits (131), Expect = 8e-10
 Identities = 28/106 (26%), Positives = 39/106 (36%), Gaps = 11/106 (10%)

Query: 189 EKVPPKIESFAFPFDGL-PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD 247
           E  PP+I     P D +  +G    + C    G P  TI W K G+ +        S   
Sbjct: 6   EDFPPRIVEH--PSDLIVSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRM 62

Query: 248 SFS--SLLSIN----SVSAAHSGEYTCVASNTAAQAR-YSSKLQVK 286
                SL  +       S    G Y CVA N   +A  + + L+V 
Sbjct: 63  LLPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 69.3 bits (170), Expect = 2e-15
 Identities = 17/98 (17%), Positives = 31/98 (31%), Gaps = 7/98 (7%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDS 248
           + PKI + +     +  G    +      G P  T  W         +P   V+      
Sbjct: 1   LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAKS--- 55

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            ++ +   S   A SG Y     N   +     ++ V+
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 14/91 (15%), Positives = 27/91 (29%), Gaps = 5/91 (5%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +  +  +  ++ G   +L+    G P P   WT+           ++          
Sbjct: 2  KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA-----KSS 56

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           + +        D G Y    +N  G  E  
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAI 87

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 68.9 bits (169), Expect = 3e-15
 Identities = 21/89 (23%), Positives = 32/89 (35%), Gaps = 8/89 (8%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  +    +  +  G    L+C   G P P I W L+G  +                  
Sbjct: 11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCEAG-------- 62

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
          ++ ++I     ED G Y C+AEN  G   
Sbjct: 63 VAELHIQDALPEDHGTYTCLAENALGQVS 91

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 65.0 bits (159), Expect = 9e-14
 Identities = 22/80 (27%), Positives = 31/80 (38%), Gaps = 5/80 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG    + C V  G P   I WL +G+P+        + +      L I        G 
Sbjct: 24  IEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARSTCEAGVAE----LHIQDALPEDHGT 78

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTC+A N   Q   S+ + V
Sbjct: 79  YTCLAENALGQVSCSAWVTV 98

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 48.9 bits (117), Expect = 6e-08
 Identities = 16/55 (29%), Positives = 23/55 (41%), Gaps = 6/55 (10%)

Query: 101 IAWFKDGRQIP-GRTSST----SLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
           I W  +G+ I   R++       L I     ED G Y C+A  + G     SA +
Sbjct: 43  ITWLLNGQPIQYARSTCEAGVAELHIQDALPEDHGTYTCLAENALG-QVSCSAWV 96

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 68.9 bits (169), Expect = 4e-15
 Identities = 20/89 (22%), Positives = 33/89 (37%), Gaps = 3/89 (3%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P          +  G  V+  C  +GNP P I W  DG ++   +       +    D 
Sbjct: 8  APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYT---IQRDLDG 64

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCE 90
             ++ +  T++D G Y  +A N  G   
Sbjct: 65 TCSLHTTASTLDDDGNYTIMAANPQGRIS 93

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 65.5 bits (160), Expect = 7e-14
 Identities = 24/83 (28%), Positives = 34/83 (40%), Gaps = 4/83 (4%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EG      C V  G+P   I W KDGK +           DLD   SL    + +    
Sbjct: 21  FEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLH-TTASTLDDD 78

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G YT +A+N   +   + +L V+
Sbjct: 79  GNYTIMAANPQGRISCTGRLMVQ 101

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 68.2 bits (167), Expect = 5e-15
 Identities = 20/77 (25%), Positives = 30/77 (38%), Gaps = 10/77 (12%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            + PG  + L+C    +    I W  DG +L  +NR  I             V +    
Sbjct: 13 FLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRITG---------EEVEVQDSV 62

Query: 72 VEDGGEYACVAENRAGT 88
            D G YACV  + +G+
Sbjct: 63 PADSGLYACVTSSPSGS 79

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 18/84 (21%), Positives = 31/84 (36%), Gaps = 11/84 (13%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPVNVSDLDSFSSLLSINSVSAAH 262
           +  G   ++ C +   D   +I WL+DG  L+   R  +           + +     A 
Sbjct: 15  VHPGDLLQLRCRLR-DDVQ-SINWLRDGVQLAESNRTRIT-------GEEVEVQDSVPAD 65

Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
           SG Y CV S+ +        + V 
Sbjct: 66  SGLYACVTSSPSGSDTTYFSVNVS 89

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 12/45 (26%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 101 IAWFKDGRQIP--GRT--SSTSLVINPVGREDRGIYQCIARRSDG 141
           I W +DG Q+    RT  +   + +      D G+Y C+     G
Sbjct: 34  INWLRDGVQLAESNRTRITGEEVEVQDSVPADSGLYACVTSSPSG 78

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 68.5 bits (168), Expect = 6e-15
 Identities = 20/79 (25%), Positives = 31/79 (39%), Gaps = 2/79 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
            G    +   VT G  P+T  W+K  K +     + V + ++ S L  I +    H G Y
Sbjct: 21  AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENSENGSKLT-ILAARQEHCGCY 78

Query: 267 TCVASNTAAQARYSSKLQV 285
           T +  N     +    L V
Sbjct: 79  TLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 66.2 bits (162), Expect = 4e-14
 Identities = 15/92 (16%), Positives = 33/92 (35%), Gaps = 5/92 (5%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          + P +     +Q ++ G +V L    +G       W     ++  +    +      + +
Sbjct: 6  SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV-----ENSE 60

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            S + I     E  G Y  + EN+ G+ +  
Sbjct: 61 NGSKLTILAARQEHCGCYTLLVENKLGSRQAQ 92

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 43.1 bits (102), Expect = 8e-06
 Identities = 13/64 (20%), Positives = 18/64 (28%), Gaps = 9/64 (14%)

Query: 101 IAWFKDGRQIP--GRTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
             W K  +QI              + L I    +E  G Y  +     G   Q    L +
Sbjct: 39  CTWMKFRKQIQESEHMKVENSENGSKLTILAARQEHCGCYTLLVENKLGS-RQAQVNLTV 97

Query: 153 GGLP 156
              P
Sbjct: 98  VDKP 101

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 68.8 bits (168), Expect = 8e-15
 Identities = 20/101 (19%), Positives = 32/101 (31%), Gaps = 11/101 (10%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP------RFPVNVSD 245
            P                    I     G P  ++RWL +G  L+        F    ++
Sbjct: 3   MPASVQL-----HTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAAN 57

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                  L +N  +  ++G YT +A+N   QA  S      
Sbjct: 58  ETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 59.6 bits (144), Expect = 1e-11
 Identities = 12/75 (16%), Positives = 24/75 (32%), Gaps = 2/75 (2%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFV--IGQFVSGHGDVISHVNISHVTVEDGGE 77
            +     G P P + W  +G  L   +       +  +        + ++  T  + G 
Sbjct: 18 WCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGN 77

Query: 78 YACVAENRAGTCEIT 92
          Y  +A N  G    +
Sbjct: 78 YTLLAANPFGQASAS 92

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.0 bits (88), Expect = 6e-04
 Identities = 11/72 (15%), Positives = 18/72 (25%), Gaps = 16/72 (22%)

Query: 101 IAWFKDGRQIP---------------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
           + W  +G  +                       L +N     + G Y  +A    G  A 
Sbjct: 32  LRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG-QAS 90

Query: 146 GSAELQLGGLPY 157
            S        P+
Sbjct: 91  ASIMAAFMDNPF 102

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 68.2 bits (167), Expect = 8e-15
 Identities = 20/89 (22%), Positives = 32/89 (35%), Gaps = 3/89 (3%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P+  Y    + +  G +V L+C  S  P P + W  +   +  N   +    +      
Sbjct: 15  APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRI---SLYQDNTG 71

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE 90
              + I  V  +D G Y   A N AG   
Sbjct: 72  RVTLLIKDVNKKDAGWYTVSAVNEAGVTT 100

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 63.6 bits (155), Expect = 4e-13
 Identities = 18/84 (21%), Positives = 35/84 (41%), Gaps = 6/84 (7%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSP---RFPVNVSDLDSFSSLLSINSVSAAH 262
            EG   ++ C ++   PP  + W ++ + +     R  +   +    +  L I  V+   
Sbjct: 28  LEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVT--LLIKDVNKKD 84

Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
           +G YT  A N A     +++L V 
Sbjct: 85  AGWYTVSAVNEAGVTTCNTRLDVT 108

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 69.9 bits (171), Expect = 8e-15
 Identities = 29/198 (14%), Positives = 56/198 (28%), Gaps = 61/198 (30%)

Query: 94  YDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
             S    IA F+  ++            + +L I  +  +D+ IY+     + G      
Sbjct: 37  KTSDKKKIAQFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQDIYKVSIYDTKG-KNVLE 95

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
               L      ++  +V+                           PKI            
Sbjct: 96  KIFDL------KIQERVS--------------------------KPKISW---------T 114

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
              T + C V +G  P  +   +DGK L              S  +  +  + + S ++ 
Sbjct: 115 CINTTLTCEVMNGTDP-ELNLYQDGKHLKL------------SQRVITHKWTTSLSAKFK 161

Query: 268 CVASNTAAQARYSSKLQV 285
           C A N  ++      +  
Sbjct: 162 CTAGNKVSKESSVEPVSC 179

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 59.1 bits (143), Expect = 7e-11
 Identities = 16/150 (10%), Positives = 36/150 (24%), Gaps = 37/150 (24%)

Query: 21  SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-----ISHVTVEDG 75
            +      +   DI W     +     +F   +      D           I H+  +D 
Sbjct: 20  DIPSFQMSDDIDDIKWEKTSDKKKIA-QFRKEKETFKEKDTYKLFKNGTLKIKHLKTDDQ 78

Query: 76  GEYACVAENRAGTCEITPY---------------------------DSGPYL-IAWFKDG 107
             Y     +  G   +                               +G    +  ++DG
Sbjct: 79  DIYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDG 138

Query: 108 RQIPGRTSSTSLVINPVGREDRGIYQCIAR 137
           + +     S  ++ +         ++C A 
Sbjct: 139 KHLK---LSQRVITHKWTTSLSAKFKCTAG 165

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 46.8 bits (111), Expect = 1e-06
 Identities = 11/75 (14%), Positives = 20/75 (26%), Gaps = 18/75 (24%)

Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            +L C       P++    DG  L  + R +                    T     ++ 
Sbjct: 118 TTLTCEVMNGTDPELNLYQDGKHLKLSQRVI----------------THKWTTSLSAKFK 161

Query: 80  CVAENRAG--TCEIT 92
           C A N+    +    
Sbjct: 162 CTAGNKVSKESSVEP 176

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 41.4 bits (97), Expect = 9e-05
 Identities = 14/115 (12%), Positives = 26/115 (22%), Gaps = 32/115 (27%)

Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
           L I        I+++ WEK   K +   F  +      +                     
Sbjct: 19  LDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTY------------------ 60

Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                 +   N +        L I  +       Y     +T  +        +K
Sbjct: 61  ------KLFKNGT--------LKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLK 101

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 67.1 bits (164), Expect = 1e-14
 Identities = 19/80 (23%), Positives = 32/80 (40%), Gaps = 11/80 (13%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G    + C V    P   I W+KDG PL              S +L +  +     G 
Sbjct: 23  APGGTVTLTCEVP-AQPSPQIHWMKDGVPLPL----------PPSPVLILPEIGPQDQGT 71

Query: 266 YTCVASNTAAQARYSSKLQV 285
           Y+CVA++++   + S  + +
Sbjct: 72  YSCVATHSSHGPQESRAVSI 91

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 66.3 bits (162), Expect = 3e-14
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             L        + PG  V+L C     P+P I W  DG  LP                 
Sbjct: 10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS------------- 56

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             + +  +  +D G Y+CVA + +   + +
Sbjct: 57 -PVLILPEIGPQDQGTYSCVATHSSHGPQES 86

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 52.8 bits (127), Expect = 2e-09
 Identities = 17/52 (32%), Positives = 26/52 (50%), Gaps = 2/52 (3%)

Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           I W KDG  +P   S   L++  +G +D+G Y C+A  S     Q S  + +
Sbjct: 42  IHWMKDGVPLPLPPSPV-LILPEIGPQDQGTYSCVATHSSHGP-QESRAVSI 91

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 71.0 bits (173), Expect = 2e-14
 Identities = 41/335 (12%), Positives = 82/335 (24%), Gaps = 109/335 (32%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG----WTLDGFELPTNNRFVIGQFVSG 57
              ++    ++    G   +L    +G+          WT D      N           
Sbjct: 2   AFTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------- 51

Query: 58  HGDVISHVNISHVTVEDGGEYACVAENRAG------------------------------ 87
                + + ++  T E+ G Y    ++                                 
Sbjct: 52  -----ATLTVADATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSS 106

Query: 88  ------TCEIT------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCI 135
                    +       P D+     +W K    I     +  + I     +  G+Y   
Sbjct: 107 QTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---TQDITIQEFTADKNGVYTVK 163

Query: 136 ARRSDGDVAQGSAELQLGGLPYV---RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
                 D +  SA  ++          ++   T   G  +S+   V              
Sbjct: 164 VWGESED-SAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVV-------------- 208

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW----LKDGKPLSPRFPVNVSDLDS 248
                             +  I G + G P LTI++     ++G+         V +   
Sbjct: 209 ------------------SEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIGSEVGEALE 250

Query: 249 FSSL-----LSINSVSAAHSGEYTCVASNTAAQAR 278
             S+     L   S +   + ++ CVA        
Sbjct: 251 GFSITPDGHLFKESATYDDTAKFWCVAKLYQQIED 285

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 62.2 bits (150), Expect = 2e-11
 Identities = 23/203 (11%), Positives = 50/203 (24%), Gaps = 51/203 (25%)

Query: 88  TCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
           T  +             W KD +     T++  L +     E+ G Y+   + +D   + 
Sbjct: 23  TATVAGDEPLPSNLTYTWTKDDQPHENNTAT--LTVADATSENAGSYKVTVQDTDTMTSV 80

Query: 146 GSAELQLGGLPYVRLIPK---VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF 202
            S    +     +  I +           + +   V                        
Sbjct: 81  ESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFS--------------------- 119

Query: 203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH 262
            G                +  L   W K    +              +  ++I   +A  
Sbjct: 120 GGKT-----------PADNYELHYSWSKGEDVIDT------------TQDITIQEFTADK 156

Query: 263 SGEYTCVASNTAAQARYSSKLQV 285
           +G YT      +  +  S+  ++
Sbjct: 157 NGVYTVKVWGESEDSAASASTKI 179

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 47.9 bits (113), Expect = 1e-06
 Identities = 14/82 (17%), Positives = 30/82 (36%), Gaps = 14/82 (17%)

Query: 207 EGARTRVICGVTHGDP---PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            G    +   V   +P    LT  W KD +P             + ++ L++   ++ ++
Sbjct: 16  AGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHE-----------NNTATLTVADATSENA 64

Query: 264 GEYTCVASNTAAQARYSSKLQV 285
           G Y     +T       S++ +
Sbjct: 65  GSYKVTVQDTDTMTSVESEVFL 86

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 40.6 bits (94), Expect = 3e-04
 Identities = 21/105 (20%), Positives = 38/105 (36%), Gaps = 13/105 (12%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCI--------ASGNPTPDIGWT----LDGFELPTNNR 48
           T  +       +T+  G  +SL  +        +SG P   I +      +G   PT   
Sbjct: 183 TMNVDQDVVESKTVALGNEISLNYVVSEDIVGDSSGMPNLTIKYNWYLQREGQLSPTLIG 242

Query: 49  FVIGQFVSGHGDVIS-HVNISHVTVEDGGEYACVAENRAGTCEIT 92
             +G+ + G       H+     T +D  ++ CVA+      + T
Sbjct: 243 SEVGEALEGFSITPDGHLFKESATYDDTAKFWCVAKLYQQIEDET 287

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 69.4 bits (169), Expect = 3e-14
 Identities = 33/214 (15%), Positives = 61/214 (28%), Gaps = 54/214 (25%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGD 142
            C  +  +    L A + + R +P        S     I        G+  C A+ +D  
Sbjct: 30  PCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAGMVFCEAKINDES 89

Query: 143 VAQGSAELQLGGLPYVRLI----PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESF 198
                  + + G     ++      +    GE L + C                      
Sbjct: 90  YQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTEL---------------- 133

Query: 199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN-------VSDLDSFSS 251
                                 +  +   W         +  VN        S++  F S
Sbjct: 134 ----------------------NVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLS 171

Query: 252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            L+I+ V+ +  G YTC AS+     + S+ ++V
Sbjct: 172 TLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 55.2 bits (132), Expect = 2e-09
 Identities = 21/92 (22%), Positives = 29/92 (31%), Gaps = 5/92 (5%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIG--WTLDGFELP---TNNRFVIGQFVS 56
             ++        L  G  + L C A       I   W     +       NR +  Q  S
Sbjct: 105 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGS 164

Query: 57  GHGDVISHVNISHVTVEDGGEYACVAENRAGT 88
                +S + I  VT  D G Y C A +   T
Sbjct: 165 EMKKFLSTLTIDGVTRSDQGLYTCAASSGLMT 196

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 43.6 bits (102), Expect = 2e-05
 Identities = 10/96 (10%), Positives = 26/96 (27%), Gaps = 3/96 (3%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
           +    +     +    +     + C  +  +  +++      K   P       D     
Sbjct: 7   IASVSDQHGVVYITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKG- 65

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
              +I S   +++G   C A       +    + V 
Sbjct: 66  --FTIPSYMISYAGMVFCEAKINDESYQSIMYIVVV 99

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 66.4 bits (162), Expect = 3e-14
 Identities = 21/96 (21%), Positives = 35/96 (36%), Gaps = 8/96 (8%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSDLDSFS 250
           P  +         +  GA    IC      P  T+ W +     L  R           +
Sbjct: 9   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-------N 61

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            +L+I +V  + +G Y C  SN  A  + ++ L V+
Sbjct: 62  GILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHVQ 97

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 65.2 bits (159), Expect = 7e-14
 Identities = 21/89 (23%), Positives = 31/89 (34%), Gaps = 13/89 (14%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHG 59
            +       Q+++PG  V+  C A S +P   + WT L   +LP+      G       
Sbjct: 10 IMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILT---- 65

Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGT 88
                 I +V   D G Y C   N    
Sbjct: 66 -------IRNVQPSDAGTYVCTGSNMFAM 87

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 14/54 (25%), Positives = 21/54 (38%), Gaps = 4/54 (7%)

Query: 101 IAWFK-DGRQIPGRT--SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ 151
           + W +    ++P R    +  L I  V   D G Y C        + QG+A L 
Sbjct: 43  LVWTRLHNGKLPSRAMDFNGILTIRNVQPSDAGTYVCTGSNMFA-MDQGTATLH 95

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 67.2 bits (164), Expect = 1e-13
 Identities = 25/97 (25%), Positives = 34/97 (35%), Gaps = 6/97 (6%)

Query: 191 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDS 248
             PK++    P      EG +  + C V    P  TI W +DG+ L      N+      
Sbjct: 18  YAPKLQG---PVAVYTWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNTP 73

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            +S L +   S    G Y C A N   Q      L  
Sbjct: 74  SASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 65.6 bits (160), Expect = 5e-13
 Identities = 23/91 (25%), Positives = 37/91 (40%), Gaps = 4/91 (4%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P L    +      G  V++ C     P+  I W  DG  LP++N   I  + +     
Sbjct: 19  APKLQGP-VAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYNTPSA-- 75

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            S++ ++  +  D G Y C A NR G   + 
Sbjct: 76  -SYLEVTPDSENDFGNYNCTAVNRIGQESLE 105

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 64.9 bits (158), Expect = 2e-13
 Identities = 27/91 (29%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNN--RFVIGQFVSGH 58
           PPI++ S   Q    G    +KC     P PD I W+     L +    R+ +    +  
Sbjct: 14  PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 72

Query: 59  GDVISHVNISHVTVED-GGEYACVAENRAGT 88
           G VIS + IS++   D    Y C A N  G+
Sbjct: 73  G-VISTLTISNIVRADFQTIYNCTAWNSFGS 102

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 63.8 bits (155), Expect = 4e-13
 Identities = 22/103 (21%), Positives = 36/103 (34%), Gaps = 8/103 (7%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSD 245
             PP I S          G + ++ C +    PP  I W      L      R+ V    
Sbjct: 12  NGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 69

Query: 246 L-DSFSSLLSINSVSAAH-SGEYTCVASNTAAQARYSSKLQVK 286
             +   S L+I+++  A     Y C A N+        +L+ +
Sbjct: 70  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 112

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 66.6 bits (162), Expect = 2e-13
 Identities = 36/232 (15%), Positives = 55/232 (23%), Gaps = 67/232 (28%)

Query: 79  ACVAENRAGTCEITPYDSGP-YLIAWFKDGR-------------------------QIPG 112
           A + E    T        GP   ++WFK G                           I  
Sbjct: 3   AFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHR 62

Query: 113 RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK-VTAIDGEG 171
             ++  LV+        G Y C   +           L +     + +  +     D   
Sbjct: 63  SANTFFLVVTAANISHDGNYLCRM-KLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121

Query: 172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD 231
           L++ C V  +P   V W        +        P  A   V   +   D  L++     
Sbjct: 122 LTVTCTVNAFPHPHVQWLMPEGVEPA--------PTAANGGV---MKEKDGSLSVA---- 166

Query: 232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA--AQARYSS 281
                                    S+        TCV  N    A   Y S
Sbjct: 167 ----------------------VDLSLPKPWHLPVTCVGKNDKEEAHGVYVS 196

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 62.4 bits (151), Expect = 7e-12
 Identities = 13/86 (15%), Positives = 23/86 (26%), Gaps = 1/86 (1%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P  L+             +++ C  +  P P + W +     P       G      G  
Sbjct: 104 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMKEKDGS- 162

Query: 62  ISHVNISHVTVEDGGEYACVAENRAG 87
           +S      +         CV +N   
Sbjct: 163 LSVAVDLSLPKPWHLPVTCVGKNDKE 188

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 47.3 bits (112), Expect = 1e-06
 Identities = 26/126 (20%), Positives = 42/126 (33%), Gaps = 27/126 (21%)

Query: 164 VTAIDGEGLSIKCP---VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
           VTA  GE +++      V+  P  EV W K+ P  E                V+ G  H 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQ---------------VLIGRMHH 45

Query: 221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           D       +    P    F ++     + +  L + + + +H G Y C       +    
Sbjct: 46  DV------IFIEWPFRGFFDIHR---SANTFFLVVTAANISHDGNYLCRMKLGETEVTKQ 96

Query: 281 SKLQVK 286
             L V 
Sbjct: 97  EHLSVV 102

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score = 45.0 bits (106), Expect = 7e-06
 Identities = 21/190 (11%), Positives = 42/190 (22%), Gaps = 60/190 (31%)

Query: 13  TLQPGPAVSLKCIA---SGNPTPDIGWTLDGFELPT-------NNRFVIGQFVSGHGDVI 62
           T   G  V+L       S  P  ++ W   G            ++   I     G  D+ 
Sbjct: 2   TAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIH 61

Query: 63  SHVN-----ISHVTVEDGGEYACVAENRAGTCE--------------ITPYD-------- 95
              N     ++   +   G Y C  +                     +            
Sbjct: 62  RSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSV 121

Query: 96  -------SG---PYLIAWFKDGRQIPGRTSSTS------------LVINPVGREDRGIYQ 133
                  +    P+ + W       P  T++               V   + +       
Sbjct: 122 LTVTCTVNAFPHPH-VQWLMPEGVEPAPTAANGGVMKEKDGSLSVAVDLSLPKPWHLPVT 180

Query: 134 CIARRSDGDV 143
           C+ +    + 
Sbjct: 181 CVGKNDKEEA 190

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 66.8 bits (162), Expect = 3e-13
 Identities = 31/189 (16%), Positives = 53/189 (28%), Gaps = 47/189 (24%)

Query: 103 WFKDGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI 161
               GR  P +  S   LV+      D   Y C+ R      A+ +A L       V   
Sbjct: 62  HDTRGRSPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLN------VFAK 115

Query: 162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGD 221
           P+                              ++         + + A+    C   +G+
Sbjct: 116 PE----------------------------ATEVSPNKGTLSVMEDSAQEIATCNSRNGN 147

Query: 222 PPLTIRWLKDGKPLSPRFPVNVSD------------LDSFSSLLSINSVSAAHSGEYTCV 269
           P   I W ++G+ L     +N               L S +S L +          + C 
Sbjct: 148 PAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCA 207

Query: 270 ASNTAAQAR 278
           A  +  + R
Sbjct: 208 AHYSLPEGR 216

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 44.4 bits (104), Expect = 1e-05
 Identities = 16/109 (14%), Positives = 30/109 (27%), Gaps = 9/109 (8%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFV----- 55
             +         ++        C +  GNP P I W  +G  L          ++     
Sbjct: 119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTV 178

Query: 56  ---SGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLI 101
              SG   + S + +     +    + C A            DS  + +
Sbjct: 179 REASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHL 227

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 63.6 bits (155), Expect = 3e-13
 Identities = 11/73 (15%), Positives = 22/73 (30%), Gaps = 1/73 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            EG      C ++H        W   GK +        +       L+ +   + + +GE
Sbjct: 21  LEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQGRKYILV-VREAAPSDAGE 79

Query: 266 YTCVASNTAAQAR 278
                    ++A 
Sbjct: 80  VVFSVRGLTSKAS 92

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 60.1 bits (146), Expect = 7e-12
 Identities = 12/82 (14%), Positives = 28/82 (34%), Gaps = 6/82 (7%)

Query: 12 QTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
            +  G + S +C ++  + +    WT+ G  + +++RF      +  G     + +   
Sbjct: 18 MEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQA----TRQGRKYI-LVVREA 72

Query: 71 TVEDGGEYACVAENRAGTCEIT 92
             D GE             + 
Sbjct: 73 APSDAGEVVFSVRGLTSKASLI 94

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 44.7 bits (106), Expect = 2e-06
 Identities = 12/71 (16%), Positives = 19/71 (26%), Gaps = 14/71 (19%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP--GRTSST------SLVINPVGREDRGIYQCIARRS 139
            C ++   +      W   G+ +    R  +T       LV+      D G      R  
Sbjct: 29  ECVLSHESASD-PAMWTVGGKTVGSSSRFQATRQGRKYILVVREAAPSDAGEVVFSVRG- 86

Query: 140 DGDVAQGSAEL 150
                   A L
Sbjct: 87  ----LTSKASL 93

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 62.3 bits (152), Expect = 9e-13
 Identities = 20/91 (21%), Positives = 37/91 (40%), Gaps = 6/91 (6%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P  +     +Q + PG  V L+C  S   TP + W  D   +  + ++ +          
Sbjct: 8  PAAIIKPLEDQWVAPGEDVELRCELSRAGTP-VHWLKDRKAIRKSQKYDVVC-----EGT 61

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          ++ + I   +++D GEY C  E    T  + 
Sbjct: 62 MAMLVIRGASLKDAGEYTCEVEASKSTASLH 92

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 56.9 bits (138), Expect = 9e-11
 Identities = 19/75 (25%), Positives = 30/75 (40%), Gaps = 7/75 (9%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
             G    + C ++    P  + WLKD K +  S ++ V      +    L I   S   +
Sbjct: 21  APGEDVELRCELSRAGTP--VHWLKDRKAIRKSQKYDVVCEGTMAM---LVIRGASLKDA 75

Query: 264 GEYTCVASNTAAQAR 278
           GEYTC    + + A 
Sbjct: 76  GEYTCEVEASKSTAS 90

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 17/73 (23%), Positives = 25/73 (34%), Gaps = 20/73 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            CE++        + W KD + I           G  +   LVI     +D G Y C   
Sbjct: 29  RCELS---RAGTPVHWLKDRKAIRKSQKYDVVCEGTMAM--LVIRGASLKDAGEYTCEVE 83

Query: 138 RSDGDVAQGSAEL 150
            S     + +A L
Sbjct: 84  AS-----KSTASL 91

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 66.7 bits (163), Expect = 1e-12
 Identities = 20/87 (22%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             I      +  +  G  V   C A G+P P I W      L +         ++   D 
Sbjct: 385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKS---NGRLTVFPD- 440

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGT 88
              + + +  V+D G Y C+A N  G 
Sbjct: 441 -GTLEVRYAQVQDNGTYLCIAANAGGN 466

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 55.9 bits (135), Expect = 4e-09
 Identities = 20/96 (20%), Positives = 34/96 (35%), Gaps = 4/96 (4%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDLDSFS 250
             +I         + EG   + +C    GDPP  I WL      +S +    ++      
Sbjct: 384 RARIRDRKAQQVFVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVFPD-- 440

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
             L +       +G Y C+A+N        + L V+
Sbjct: 441 GTLEVRYAQVQDNGTYLCIAANAGGNDSMPAHLHVR 476

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 62.0 bits (151), Expect = 1e-12
 Identities = 14/91 (15%), Positives = 31/91 (34%), Gaps = 4/91 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
             +     +  +Q G + + +C  S      + W LD   L  N    I    +  G  
Sbjct: 13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEI---DAQPGGY 69

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             + +  + ++D G     A ++  +  + 
Sbjct: 70 HV-LTLRQLALKDSGTIYFEAGDQRASAALR 99

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 5/80 (6%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG+     C ++       + W  D  PL       +        +L++  ++   SG  
Sbjct: 27  EGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTI 85

Query: 267 TCVASNTAAQARYSSKLQVK 286
              A +  A A     L+V 
Sbjct: 86  YFEAGDQRASAA----LRVT 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 61.2 bits (149), Expect = 2e-12
 Identities = 17/81 (20%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            +G + R+   +   D    ++WLK+G+ +       + +       L+I+  S A    
Sbjct: 29  SKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESIGAKRTLTISQCSLADDAA 86

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y CV             L VK
Sbjct: 87  YQCVVGGEKCSTE----LFVK 103

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 7/82 (8%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL-PTNNRFVIGQFVSGHGDVISHVNISHV 70
             +  G  + L    + +   ++ W  +G E+  + ++++              + IS  
Sbjct: 26  YQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES-----IGAKRTLTISQC 79

Query: 71  TVEDGGEYACVAENRAGTCEIT 92
           ++ D   Y CV      + E+ 
Sbjct: 80  SLADDAAYQCVVGGEKCSTELF 101

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 104

 Score = 41.6 bits (98), Expect = 3e-05
 Identities = 16/75 (21%), Positives = 26/75 (34%), Gaps = 23/75 (30%)

Query: 88  TCEITPYDSGPYL-IAWFKDGRQI-----------PGRTSSTSLVINPVGREDRGIYQCI 135
           T E+    +     + W K+G++I            G   +  L I+     D   YQC+
Sbjct: 37  TVEL----ADHDAEVKWLKNGQEIQMSGSKYIFESIGAKRT--LTISQCSLADDAAYQCV 90

Query: 136 ARRSDGDVAQGSAEL 150
                    + S EL
Sbjct: 91  VGG-----EKCSTEL 100

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 59.7 bits (145), Expect = 9e-12
 Identities = 18/91 (19%), Positives = 29/91 (31%), Gaps = 2/91 (2%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P ++     +Q +  G  V +    S      + W  +G EL   + F         G  
Sbjct: 8  PVLIVTPLEDQQVFVGDRVEMAVEVS-EEGAQVMWMKNGVELTREDSFKARYRFKKDGKR 66

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             +  S V  ED G Y  +        E+ 
Sbjct: 67 HILI-FSDVVQEDRGRYQVITNGGQCEAELI 96

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 14/84 (16%), Positives = 28/84 (33%), Gaps = 11/84 (13%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNVSDLDSFSSLLSINSVSAAH 262
            G R  +   V+       + W+K+G  L+     +             L+  + V    
Sbjct: 22  VGDRVEMAVEVSE--EGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILI-FSDVVQED 78

Query: 263 SGEYTCVASNTAAQARYSSKLQVK 286
            G Y  + +    +A    +L V+
Sbjct: 79  RGRYQVITNGGQCEA----ELIVE 98

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 42.3 bits (100), Expect = 1e-05
 Identities = 18/75 (24%), Positives = 27/75 (36%), Gaps = 20/75 (26%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSST------------SLVINPVGREDRGIYQCI 135
             E++        + W K+G ++    S               L+ + V +EDRG YQ I
Sbjct: 29  AVEVS---EEGAQVMWMKNGVELTREDSFKARYRFKKDGKRHILIFSDVVQEDRGRYQVI 85

Query: 136 ARRSDGDVAQGSAEL 150
                    Q  AEL
Sbjct: 86  TNGG-----QCEAEL 95

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 59.2 bits (144), Expect = 1e-11
 Identities = 19/82 (23%), Positives = 34/82 (41%), Gaps = 11/82 (13%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
            G        ++   P +  +W   G+PL  SP   +     D    +L +++     +G
Sbjct: 19  VGETAHFEIELSE--PDVHGQWKLKGQPLAASPDCEIIE---DGKKHILILHNCQLGMTG 73

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
           E +  A+NT + A     L+VK
Sbjct: 74  EVSFQAANTKSAAN----LKVK 91

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 55.8 bits (135), Expect = 1e-10
 Identities = 13/81 (16%), Positives = 22/81 (27%), Gaps = 6/81 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +  G     +   S  P     W L G  L  +    I       G     + + +  
Sbjct: 15 VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLAASPDCEI----IEDGKKHILI-LHNCQ 68

Query: 72 VEDGGEYACVAENRAGTCEIT 92
          +   GE +  A N      + 
Sbjct: 69 LGMTGEVSFQAANTKSAANLK 89

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 40.7 bits (96), Expect = 4e-05
 Identities = 9/73 (12%), Positives = 19/73 (26%), Gaps = 20/73 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
             E++          W   G+ +           G+     L+++       G     A 
Sbjct: 26  EIELS---EPDVHGQWKLKGQPLAASPDCEIIEDGKKHI--LILHNCQLGMTGEVSFQAA 80

Query: 138 RSDGDVAQGSAEL 150
                  + +A L
Sbjct: 81  N-----TKSAANL 88

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 63.2 bits (154), Expect = 1e-11
 Identities = 20/92 (21%), Positives = 33/92 (35%), Gaps = 14/92 (15%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           + P +  +  +  +  G    LKC     P   + W L    + ++         S H  
Sbjct: 351 SAPFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHA--------SRHPR 400

Query: 61  VISHVN----ISHVTVEDGGEYACVAENRAGT 88
           +    +     SHV + D G Y C+  N AG 
Sbjct: 401 ISVLNDGTLNFSHVLLSDTGVYTCMVTNVAGN 432

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 51.7 bits (124), Expect = 1e-07
 Identities = 25/118 (21%), Positives = 41/118 (34%), Gaps = 19/118 (16%)

Query: 178 VAGYPIEEVHWEK---VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP 234
           + G  + EV         P I         + EG    + C      P  +++WL     
Sbjct: 335 MRGRYLVEVDQASFQCSAPFIMDAP-RDLNISEGRMAELKC---RTPPMSSVKWLLPNGT 390

Query: 235 L------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           +       PR  V           L+ + V  + +G YTC+ +N A  +  S+ L V 
Sbjct: 391 VLSHASRHPRISVLND------GTLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 61.2 bits (148), Expect = 2e-11
 Identities = 28/211 (13%), Positives = 63/211 (29%), Gaps = 59/211 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQI--------------PGRTSST-----SLVINPVGRED 128
              ++  +     I W K+ + +                RT        S+VI  +   D
Sbjct: 17  GHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNLSIVILALRPSD 76

Query: 129 RGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW 188
            G Y+C+  + + D  +     ++                                 +  
Sbjct: 77  EGTYECVVLKYEKDAFKREHLAEV--------------------------------TLSV 104

Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
           +   P           +P     R+IC  + G P   + WL++G+ L+        D + 
Sbjct: 105 KADFPTPSI---SDFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPE- 160

Query: 249 FSSLLSINS---VSAAHSGEYTCVASNTAAQ 276
            + L +++S    +   +  + C+      +
Sbjct: 161 -TELYAVSSKLDFNMTTNHSFMCLIKYGHLR 190

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 15/83 (18%), Positives = 27/83 (32%), Gaps = 4/83 (4%)

Query: 11  EQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
           +  +       + C  SG  P P + W  +G EL   N  V     +    V S ++   
Sbjct: 115 DFEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLD--- 171

Query: 70  VTVEDGGEYACVAENRAGTCEIT 92
             +     + C+ +        T
Sbjct: 172 FNMTTNHSFMCLIKYGHLRVNQT 194

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 61.6 bits (149), Expect = 2e-11
 Identities = 29/229 (12%), Positives = 59/229 (25%), Gaps = 72/229 (31%)

Query: 88  TCEITPY---DSGPYLIAWFKDGRQIP-----------------GRTS---------STS 118
            C+       D    ++ W  + + I                   R           + +
Sbjct: 22  ECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAA 81

Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCP 177
           L I  V  +D G+Y+C+   S G        +++            V         + C 
Sbjct: 82  LQITDVKLQDAGVYRCMI--SYGGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQ 139

Query: 178 VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP 237
             GYP  EV W                                          D + LS 
Sbjct: 140 AEGYPKAEVIWTS---------------------------------------SDHQVLSG 160

Query: 238 R-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           +    N    +   ++ S   ++   +  + C       +  ++++L +
Sbjct: 161 KTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRLDPEENHTAELVI 209

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score = 50.4 bits (120), Expect = 1e-07
 Identities = 16/93 (17%), Positives = 23/93 (24%), Gaps = 4/93 (4%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT-LDGFELPTNNRFVIGQFVSGHG 59
            P       I           L C A G P  ++ WT  D   L         +      
Sbjct: 115 APYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLF 174

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           +V S + I+         + C           T
Sbjct: 175 NVTSTLRIN---TTTNEIFYCTFRRLDPEENHT 204

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 16/91 (17%), Positives = 39/91 (42%), Gaps = 6/91 (6%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P     +  +  +  G A +L+C+ S    P + W      L   +++ + Q     G +
Sbjct: 8  PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ----EGAM 62

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          +  + + ++  +D G Y+C   ++  +  +T
Sbjct: 63 LE-LVVRNLRPQDSGRYSCSFGDQTTSATLT 92

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 51.9 bits (125), Expect = 5e-09
 Identities = 11/75 (14%), Positives = 25/75 (33%), Gaps = 7/75 (9%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EG    + C ++       ++W      L    ++ +     +     L + ++    S
Sbjct: 21  LEGGAATLRCVLS--SVAAPVKWCYGNNVLRPGDKYSLRQ---EGAMLELVVRNLRPQDS 75

Query: 264 GEYTCVASNTAAQAR 278
           G Y+C   +    A 
Sbjct: 76  GRYSCSFGDQTTSAT 90

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 41.9 bits (99), Expect = 2e-05
 Identities = 17/79 (21%), Positives = 25/79 (31%), Gaps = 20/79 (25%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            C ++   S    + W      +           G      LV+  +  +D G Y C   
Sbjct: 29  RCVLS---SVAAPVKWCYGNNVLRPGDKYSLRQEGAMLE--LVVRNLRPQDSGRYSCSF- 82

Query: 138 RSDGDVAQGSAELQLGGLP 156
              GD    SA L +  LP
Sbjct: 83  ---GD-QTTSATLTVTALP 97

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 62.8 bits (153), Expect = 2e-11
 Identities = 22/88 (25%), Positives = 36/88 (40%), Gaps = 5/88 (5%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
             P++     +  +  G A  LKC AS      + W      + T+  + +   V   G 
Sbjct: 340 YAPVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTHGAYKVRIAVLSDGT 398

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGT 88
           +    N ++VTV+D G Y C+  N  G 
Sbjct: 399 L----NFTNVTVQDTGMYTCMVSNSVGN 422

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 52.1 bits (125), Expect = 8e-08
 Identities = 18/87 (20%), Positives = 33/87 (37%), Gaps = 14/87 (16%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLS-----PRFPVNVSDLDSFSSLLSINSV 258
           + EG    + C         ++ W+  +G  ++      R  V           L+  +V
Sbjct: 353 VTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVLSD------GTLNFTNV 404

Query: 259 SAAHSGEYTCVASNTAAQARYSSKLQV 285
           +   +G YTC+ SN+      S+ L V
Sbjct: 405 TVQDTGMYTCMVSNSVGNTTASATLNV 431

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 58.6 bits (142), Expect = 2e-11
 Identities = 18/92 (19%), Positives = 37/92 (40%), Gaps = 6/92 (6%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          +  +     +         V L C     P  ++ WT DG E+  +   ++ +      D
Sbjct: 12 SWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQK-----ED 65

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           +  + +  V +ED GEY C  ++ + +  +T
Sbjct: 66 TVRRLVLPAVQLEDSGEYLCEIDDESASFTVT 97

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 55.2 bits (133), Expect = 4e-10
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 8/91 (8%)

Query: 191 VPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLD 247
           V   I   +           R  + C +    P   +RW KDG+ +  SP   +     +
Sbjct: 10  VSSWIVYPSGKVYVAAVRLERVVLTCEL--CRPWAEVRWTKDGEEVVESPALLLQK---E 64

Query: 248 SFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
                L + +V    SGEY C   + +A   
Sbjct: 65  DTVRRLVLPAVQLEDSGEYLCEIDDESASFT 95

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 40.5 bits (95), Expect = 7e-05
 Identities = 18/71 (25%), Positives = 26/71 (36%), Gaps = 14/71 (19%)

Query: 101 IAWFKDGRQIP--------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
           + W KDG ++            +   LV+  V  ED G Y C       D    S  + +
Sbjct: 44  VRWTKDGEEVVESPALLLQKEDTVRRLVLPAVQLEDSGEYLCEI----DD-ESASFTVTV 98

Query: 153 GGLPYVRLIPK 163
              P VR+I  
Sbjct: 99  TEPP-VRIIYS 108

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 60.8 bits (147), Expect = 3e-11
 Identities = 22/215 (10%), Positives = 45/215 (20%), Gaps = 63/215 (29%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP--------GRTS---------STSLVINPVGREDRG 130
            C+          +   +   Q           R +              I  V   D G
Sbjct: 23  ECDFDR--RECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSG 80

Query: 131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK 190
            Y+C+              +++           +       + + C   GYP        
Sbjct: 81  QYRCLVICGAA-WDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYP-------- 131

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
                                              + W     P +         L   +
Sbjct: 132 -LA-------------------------------EVSWQNVSVPANTSHIRTPEGLYQVT 159

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           S+L +       S  ++C+  N   +   S+ +  
Sbjct: 160 SVLRLKPQP---SRNFSCMFWNAHMKELTSAIIDP 191

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 45.0 bits (106), Expect = 6e-06
 Identities = 13/68 (19%), Positives = 24/68 (35%), Gaps = 7/68 (10%)

Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
           V L C A G P  ++ W        T++     +   G   V S + +     +    ++
Sbjct: 121 VQLTCQARGYPLAEVSWQNVSVPANTSHI----RTPEGLYQVTSVLRLK---PQPSRNFS 173

Query: 80  CVAENRAG 87
           C+  N   
Sbjct: 174 CMFWNAHM 181

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 13/92 (14%), Positives = 33/92 (35%), Gaps = 6/92 (6%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
                 +  E   + G + +L C  +     ++ W  DG +L ++++  +         
Sbjct: 10 VFAKEQPAHREVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEA-----VG 63

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
              + +      + GEY+C A  +  +  + 
Sbjct: 64 CTRRLVVQQAGQAEAGEYSCEAGGQQLSFRLQ 95

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 23/80 (28%), Positives = 30/80 (37%), Gaps = 7/80 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
            GA   + C V        + W KDGK LS    V V      +  L +     A +GEY
Sbjct: 25  AGASATLSCEVAQ--AQTEVTWYKDGKKLSSSSKVRVEA-VGCTRRLVVQQAGQAEAGEY 81

Query: 267 TCVASNTAAQARYSSKLQVK 286
           +C A           +LQV 
Sbjct: 82  SCEAGGQQLSF----RLQVA 97

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 40.9 bits (96), Expect = 4e-05
 Identities = 20/80 (25%), Positives = 32/80 (40%), Gaps = 20/80 (25%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
           +CE+         + W+KDG+++           G T    LV+   G+ + G Y C A 
Sbjct: 32  SCEVA---QAQTEVTWYKDGKKLSSSSKVRVEAVGCTRR--LVVQQAGQAEAGEYSCEAG 86

Query: 138 RSDGDVAQGSAELQLGGLPY 157
                  Q S  LQ+ G  +
Sbjct: 87  G-----QQLSFRLQVAGQCF 101

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 58.2 bits (140), Expect = 3e-11
 Identities = 19/91 (20%), Positives = 33/91 (36%), Gaps = 5/91 (5%)

Query: 3   PILTYSFIEQTLQPGPAVSLKCIASGNPTPDI--GWTLDGFELPTNNRFVIGQFVSGHGD 60
           P +T     Q+   G  VS  C A+ +    +   W  D   L            +  G+
Sbjct: 11  PQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGE 70

Query: 61  VI---SHVNISHVTVEDGGEYACVAENRAGT 88
           ++   + + + +V     G Y CV  N  G+
Sbjct: 71  LMEYTTILRLRNVEFTSEGXYQCVISNHFGS 101

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 48.1 bits (114), Expect = 1e-07
 Identities = 17/75 (22%), Positives = 27/75 (36%), Gaps = 8/75 (10%)

Query: 208 GARTRVICGVT-HGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLSINSVS 259
           G+     C      D P+T  W  D + L                +L  ++++L + +V 
Sbjct: 25  GSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVE 84

Query: 260 AAHSGEYTCVASNTA 274
               G Y CV SN  
Sbjct: 85  FTSEGXYQCVISNHF 99

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 58.2 bits (141), Expect = 3e-11
 Identities = 19/83 (22%), Positives = 30/83 (36%), Gaps = 9/83 (10%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
               +    C V+     +T +W K+G  +  S R  ++          L I+ V     
Sbjct: 21  KAAEQAVFKCEVSD--EKVTGKWYKNGVEVRPSKRITISH---VGRFHKLVIDDVRPEDE 75

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G+YT V    A     S+KL   
Sbjct: 76  GDYTFVPDGYALSL--SAKLNFL 96

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 57.8 bits (140), Expect = 5e-11
 Identities = 18/79 (22%), Positives = 27/79 (34%), Gaps = 6/79 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T++       KC  S        W  +G E+  + R  I      H      + I  V 
Sbjct: 18 LTVKAAEQAVFKCEVSD-EKVTGKWYKNGVEVRPSKRITIS-----HVGRFHKLVIDDVR 71

Query: 72 VEDGGEYACVAENRAGTCE 90
           ED G+Y  V +  A +  
Sbjct: 72 PEDEGDYTFVPDGYALSLS 90

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 20/82 (24%), Positives = 30/82 (36%), Gaps = 18/82 (21%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            CE++          W+K+G ++           GR     LVI+ V  ED G Y  +  
Sbjct: 29  KCEVS---DEKVTGKWYKNGVEVRPSKRITISHVGRFHK--LVIDDVRPEDEGDYTFVP- 82

Query: 138 RSDGDVAQGSAELQLGGLPYVR 159
             DG     SA+L    +    
Sbjct: 83  --DGYALSLSAKLNFLEIKVSG 102

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.8 bits (140), Expect = 4e-11
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T      V L C  S        W  DG ++  +   V+             + +    
Sbjct: 20 LTFTTSERVVLTCELSR-VDFPATWYKDGQKVEESELLVVKM-----DGRKHRLILPEAK 73

Query: 72 VEDGGEYACVAENRAGTCEIT 92
          V+D GE+ C  E  +    +T
Sbjct: 74 VQDSGEFECRTEGVSAFFGVT 94

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 57.4 bits (139), Expect = 5e-11
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 3/72 (4%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
              R  + C ++  D P    W KDG+ +     + V        L+ +       SGE+
Sbjct: 24  TSERVVLTCELSRVDFP--ATWYKDGQKVEESELLVVKMDGRKHRLI-LPEAKVQDSGEF 80

Query: 267 TCVASNTAAQAR 278
            C     +A   
Sbjct: 81  ECRTEGVSAFFG 92

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 13/73 (17%), Positives = 26/73 (35%), Gaps = 20/73 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
           TCE++      +   W+KDG+++           GR     L++     +D G ++C   
Sbjct: 31  TCELS---RVDFPATWYKDGQKVEESELLVVKMDGRKHR--LILPEAKVQDSGEFECRTE 85

Query: 138 RSDGDVAQGSAEL 150
                       +
Sbjct: 86  G-----VSAFFGV 93

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 59.2 bits (143), Expect = 6e-11
 Identities = 24/200 (12%), Positives = 49/200 (24%), Gaps = 70/200 (35%)

Query: 101 IAWFKDGRQIP------------GR---TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
           + W +    +             G     ++  L I  + R+D G Y      ++G    
Sbjct: 30  VRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYNVTVYSTNGTRIL 89

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGL 205
            +  L L      R++  V+                           P I          
Sbjct: 90  -NKALDL------RILEMVS--------------------------KPMIYW-------- 108

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            E +   + C V  G     ++  +  + L                  +++         
Sbjct: 109 -ECSNATLTCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAP 154

Query: 266 YTCVASNTAAQARYSSKLQV 285
           + C A N  +Q      +  
Sbjct: 155 FKCKAVNRVSQESEMEVVNC 174

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 51.9 bits (124), Expect = 2e-08
 Identities = 17/149 (11%), Positives = 44/149 (29%), Gaps = 37/149 (24%)

Query: 21  SLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN--ISHVTVEDGGEY 78
           ++      +   ++ W      +    R +     SG  +++++ +  I ++T +D G Y
Sbjct: 17  NIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTY 76

Query: 79  ACVAENRAG------------------------------TCEITPYDSGPYLIAWFKDGR 108
                +  G                              TCE+   +     +  ++   
Sbjct: 77  NVTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVL--EGTDVELKLYQGKE 134

Query: 109 QIPGRTSSTSLVINPVGREDRGIYQCIAR 137
            +    S     ++      R  ++C A 
Sbjct: 135 HLR---SLRQKTMSYQWTNLRAPFKCKAV 160

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 41.1 bits (96), Expect = 1e-04
 Identities = 12/79 (15%), Positives = 25/79 (31%), Gaps = 6/79 (7%)

Query: 214 ICGVTHGDPPLTIRWLKDGKPL------SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           I      D    +RW +    +         F  + +     +  L I +++   SG Y 
Sbjct: 18  IPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANGDLKIKNLTRDDSGTYN 77

Query: 268 CVASNTAAQARYSSKLQVK 286
               +T      +  L ++
Sbjct: 78  VTVYSTNGTRILNKALDLR 96

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 40.7 bits (95), Expect = 1e-04
 Identities = 8/68 (11%), Positives = 16/68 (23%), Gaps = 16/68 (23%)

Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            +L C        ++        L +  +                  +S+        + 
Sbjct: 113 ATLTCEVLEGTDVELKLYQGKEHLRSLRQKT----------------MSYQWTNLRAPFK 156

Query: 80  CVAENRAG 87
           C A NR  
Sbjct: 157 CKAVNRVS 164

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 16/73 (21%), Positives = 26/73 (35%), Gaps = 3/73 (4%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            +G R R +  +   DP L ++W K+G+ + P              L  IN+       E
Sbjct: 21  DKGGRVRFVVEL--ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILF-INNCQMTDDSE 77

Query: 266 YTCVASNTAAQAR 278
           Y   A +      
Sbjct: 78  YYVTAGDEKCSTE 90

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 54.7 bits (132), Expect = 5e-10
 Identities = 12/82 (14%), Positives = 30/82 (36%), Gaps = 6/82 (7%)

Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
             +  G  V      + +P  ++ W  +G E+  + +++              + I++ 
Sbjct: 17 AYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH-----KGCQRILFINNC 70

Query: 71 TVEDGGEYACVAENRAGTCEIT 92
           + D  EY   A +   + E+ 
Sbjct: 71 QMTDDSEYYVTAGDEKCSTELF 92

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 39.3 bits (92), Expect = 1e-04
 Identities = 19/78 (24%), Positives = 29/78 (37%), Gaps = 18/78 (23%)

Query: 88  TCEITPYDSGPYL-IAWFKDGRQIPG--------RTSSTSLVINPVGREDRGIYQCIARR 138
             E+    + P L + W+K+G++I          +     L IN     D   Y   A  
Sbjct: 29  VVEL----ADPKLEVKWYKNGQEIRPSTKYIFEHKGCQRILFINNCQMTDDSEYYVTA-- 82

Query: 139 SDGDVAQGSAELQLGGLP 156
             GD  + S EL +   P
Sbjct: 83  --GD-EKCSTELFVRSGP 97

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 57.1 bits (137), Expect = 1e-10
 Identities = 21/81 (25%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIG--WTLDGFELPTN---NRFVIGQFVSGHGDVISHVNI 67
           L  G  + L C A       I   W     +       NR +  Q  S     +S + I
Sbjct: 19 ELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTI 78

Query: 68 SHVTVEDGGEYACVAENRAGT 88
            VT  D G Y C A +   T
Sbjct: 79 DGVTRSDQGLYTCAASSGLMT 99

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 53.6 bits (128), Expect = 2e-09
 Identities = 19/90 (21%), Positives = 33/90 (36%), Gaps = 8/90 (8%)

Query: 205 LPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDS-------FSSLLSIN 256
           L  G +  + C      +  +   W         +  VN             F S L+I+
Sbjct: 20  LSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTID 79

Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
            V+ +  G YTC AS+     + S+ ++V 
Sbjct: 80  GVTRSDQGLYTCAASSGLMTKKNSTFVRVH 109

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 14/73 (19%), Positives = 31/73 (42%), Gaps = 3/73 (4%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGE 265
            G R  + C V+       ++W K+G+ + P         ++    +L I   + A + E
Sbjct: 21  CGERVELECEVSE--DDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAE 78

Query: 266 YTCVASNTAAQAR 278
           Y+ + +   + A+
Sbjct: 79  YSVMTTGGQSSAK 91

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 53.5 bits (129), Expect = 1e-09
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T   G  V L+C  S     ++ W  +G E+    +      V G       + I   T
Sbjct: 17 TTAYCGERVELECEVS-EDDANVKWFKNGEEIIPGPKSRYRIRVEGK---KHILIIEGAT 72

Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D  EY+ +      + +++
Sbjct: 73 KADAAEYSVMTTGGQSSAKLS 93

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 16/73 (21%), Positives = 25/73 (34%), Gaps = 18/73 (24%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSS----------TSLVINPVGREDRGIYQCIAR 137
            CE++        + WFK+G +I     S            L+I    + D   Y  +  
Sbjct: 28  ECEVS---EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMT- 83

Query: 138 RSDGDVAQGSAEL 150
                  Q SA+L
Sbjct: 84  ---TG-GQSSAKL 92

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 59.9 bits (145), Expect = 2e-10
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 6/82 (7%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
                 G  ++++C         +  +    ++ +          +G       +    V
Sbjct: 255 AWEAHLGDTLTIRCDTKQQGMTKVWVSPSNEQVLSQGSNGSVSVRNGD------LFFKKV 308

Query: 71  TVEDGGEYACVAENRAGTCEIT 92
            VEDGG Y C A        ++
Sbjct: 309 QVEDGGVYTCYAMGETFNETLS 330

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 52.5 bits (126), Expect = 5e-08
 Identities = 12/80 (15%), Positives = 21/80 (26%), Gaps = 3/80 (3%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G    + C          +      + +      +   +   +  L    V     G 
Sbjct: 259 HLGDTLTIRCDTK-QQGMTKVWVSPSNEQVLS--QGSNGSVSVRNGDLFFKKVQVEDGGV 315

Query: 266 YTCVASNTAAQARYSSKLQV 285
           YTC A         S +L+V
Sbjct: 316 YTCYAMGETFNETLSVELKV 335

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/78 (25%), Positives = 32/78 (41%), Gaps = 7/78 (8%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
          QT+  G  + LKC  S N      WT +G  +  ++R  + Q        I  + I++  
Sbjct: 17 QTVNLGKEICLKCEISENIPGK--WTKNGLPVQESDRLKVVQ-----KGRIHKLVIANAL 69

Query: 72 VEDGGEYACVAENRAGTC 89
           ED G+Y    +    T 
Sbjct: 70 TEDEGDYVFAPDAYNVTL 87

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 53.9 bits (130), Expect = 1e-09
 Identities = 16/83 (19%), Positives = 27/83 (32%), Gaps = 10/83 (12%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
             G    + C ++  + P   +W K+G P+  S R  V           L I +      
Sbjct: 20  NLGKEICLKCEIS-ENIP--GKWTKNGLPVQESDRLKVVQKGRIHK---LVIANALTEDE 73

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G+Y              +K+ V 
Sbjct: 74  GDYVFAPDAYNVTL--PAKVHVI 94

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 19/79 (24%), Positives = 24/79 (30%), Gaps = 19/79 (24%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            CEI    S      W K+G  +           GR     LVI     ED G Y     
Sbjct: 28  KCEI----SENIPGKWTKNGLPVQESDRLKVVQKGRIHK--LVIANALTEDEGDYVFAP- 80

Query: 138 RSDGDVAQGSAELQLGGLP 156
             D       A++ +   P
Sbjct: 81  --DAYNVTLPAKVHVISGP 97

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 55.4 bits (134), Expect = 3e-10
 Identities = 11/91 (12%), Positives = 29/91 (31%), Gaps = 6/91 (6%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
              +       +  G     +          + W   G ++  +N++ +    +  G  
Sbjct: 8  VSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQRGGSDISASNKYGL----ATEGTR 62

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           + + +  V   D G YA +A +     ++ 
Sbjct: 63 HT-LTVREVGPADQGSYAVIAGSSKVKFDLK 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 55.0 bits (133), Expect = 3e-10
 Identities = 13/83 (15%), Positives = 29/83 (34%), Gaps = 11/83 (13%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
             G+              + +RW + G  +  S ++ +     +     L++  V  A  
Sbjct: 21  AAGSPAVFEAETER--AGVKVRWQRGGSDISASNKYGLAT---EGTRHTLTVREVGPADQ 75

Query: 264 GEYTCVASNTAAQARYSSKLQVK 286
           G Y  +A ++  +      L+V 
Sbjct: 76  GSYAVIAGSSKVKFD----LKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 43.9 bits (104), Expect = 3e-06
 Identities = 14/73 (19%), Positives = 22/73 (30%), Gaps = 20/73 (27%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
             E          + W + G  I           G   +  L +  VG  D+G Y  IA 
Sbjct: 29  EAETE---RAGVKVRWQRGGSDISASNKYGLATEGTRHT--LTVREVGPADQGSYAVIAG 83

Query: 138 RSDGDVAQGSAEL 150
                 ++   +L
Sbjct: 84  S-----SKVKFDL 91

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 55.1 bits (133), Expect = 4e-10
 Identities = 19/92 (20%), Positives = 31/92 (33%), Gaps = 9/92 (9%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P   T     +    G   +L+C  S      + W      L    R+ + Q      D 
Sbjct: 8  PARFTQDLKTKEASEGATATLQCELS--KVAPVEWKKGPETLRDGGRYSLKQ------DG 59

Query: 62 ISHV-NISHVTVEDGGEYACVAENRAGTCEIT 92
                I  ++V D GEY+C+      +  +T
Sbjct: 60 TRCELQIHDLSVADAGEYSCMCGQERTSATLT 91

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 52.4 bits (126), Expect = 3e-09
 Identities = 18/75 (24%), Positives = 30/75 (40%), Gaps = 8/75 (10%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            EGA   + C ++       + W K  + L    R+ +     D     L I+ +S A +
Sbjct: 21  SEGATATLQCELS---KVAPVEWKKGPETLRDGGRYSLKQ---DGTRCELQIHDLSVADA 74

Query: 264 GEYTCVASNTAAQAR 278
           GEY+C+       A 
Sbjct: 75  GEYSCMCGQERTSAT 89

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 45.8 bits (109), Expect = 9e-07
 Identities = 17/79 (21%), Positives = 26/79 (32%), Gaps = 21/79 (26%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            CE++        + W K    +           G      L I+ +   D G Y C+  
Sbjct: 29  QCELSK----VAPVEWKKGPETLRDGGRYSLKQDGTRCE--LQIHDLSVADAGEYSCMC- 81

Query: 138 RSDGDVAQGSAELQLGGLP 156
              G   + SA L +  LP
Sbjct: 82  ---GQ-ERTSATLTVRALP 96

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 54.6 bits (132), Expect = 5e-10
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 6/91 (6%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
              T       ++        C    +P   + W     EL  + +    Q     G  
Sbjct: 8  ANCFTEELTNLQVEEKGTAVFTCKTE-HPAATVTWRKGLLELRASGKHQPSQ----EGLT 62

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          +    IS +   D   Y C         ++ 
Sbjct: 63 LRLT-ISALEKADSDTYTCDIGQAQSRAQLL 92

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 52.7 bits (127), Expect = 3e-09
 Identities = 17/73 (23%), Positives = 27/73 (36%), Gaps = 3/73 (4%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            E       C   H  P  T+ W K    L        S  +  +  L+I+++  A S  
Sbjct: 21  EEKGTAVFTCKTEH--PAATVTWRKGLLELRASGKHQPSQ-EGLTLRLTISALEKADSDT 77

Query: 266 YTCVASNTAAQAR 278
           YTC      ++A+
Sbjct: 78  YTCDIGQAQSRAQ 90

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.4 bits (95), Expect = 5e-05
 Identities = 15/66 (22%), Positives = 23/66 (34%), Gaps = 17/66 (25%)

Query: 101 IAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
           + W K   ++           G T    L I+ + + D   Y C      G  AQ  A+L
Sbjct: 39  VTWRKGLLELRASGKHQPSQEGLTLR--LTISALEKADSDTYTCDI----GQ-AQSRAQL 91

Query: 151 QLGGLP 156
            + G  
Sbjct: 92  LVQGRR 97

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 54.3 bits (131), Expect = 9e-10
 Identities = 19/92 (20%), Positives = 29/92 (31%), Gaps = 7/92 (7%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P   T     +    G    L+C  S      + W      L   +R  + Q     G 
Sbjct: 18  LPIKFTEGLRNEEATEGATAVLRCELSKMAP--VEWWKGHETLRDGDRHSLRQ----DGA 71

Query: 61  VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
               + I  +  ED GEY C+      +  +T
Sbjct: 72  RCE-LQIRGLVAEDAGEYLCMCGKERTSAMLT 102

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 51.2 bits (123), Expect = 1e-08
 Identities = 18/74 (24%), Positives = 27/74 (36%), Gaps = 8/74 (10%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           EGA   + C ++    P  + W K  + L    R  +     D     L I  + A  +G
Sbjct: 33  EGATAVLRCELS-KMAP--VEWWKGHETLRDGDRHSLRQ---DGARCELQIRGLVAEDAG 86

Query: 265 EYTCVASNTAAQAR 278
           EY C+       A 
Sbjct: 87  EYLCMCGKERTSAM 100

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 43.9 bits (104), Expect = 5e-06
 Identities = 17/79 (21%), Positives = 27/79 (34%), Gaps = 21/79 (26%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP----------GRTSSTSLVINPVGREDRGIYQCIAR 137
            CE+    S    + W+K    +           G      L I  +  ED G Y C+  
Sbjct: 40  RCEL----SKMAPVEWWKGHETLRDGDRHSLRQDGARCE--LQIRGLVAEDAGEYLCMCG 93

Query: 138 RSDGDVAQGSAELQLGGLP 156
           +      + SA L +  +P
Sbjct: 94  K-----ERTSAMLTVRAMP 107

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 56.0 bits (135), Expect = 3e-09
 Identities = 30/182 (16%), Positives = 44/182 (24%), Gaps = 38/182 (20%)

Query: 103 WFKDGR----QIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV 158
            +K+ R       GR    S  ++PV     G Y C                        
Sbjct: 56  LYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRG--------------------SH 95

Query: 159 RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT 218
              P   +     +             +       K    A P   +  G R  + C   
Sbjct: 96  PHSPTGWSAPSNPV------------VIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSD 143

Query: 219 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR 278
                      K+G    P   V         +  SI  +  A +G Y C  S T    +
Sbjct: 144 IM--FEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQ 201

Query: 279 YS 280
            S
Sbjct: 202 LS 203

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D Length = 316

 Score = 48.3 bits (115), Expect = 9e-07
 Identities = 30/197 (15%), Positives = 46/197 (23%), Gaps = 49/197 (24%)

Query: 95  DSGPYLIAWFKDG---------RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
           D         K+G          QI    S  +  I P+     G Y+C    +      
Sbjct: 143 DIMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQL 202

Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
              S  L +           VT                            K    A P  
Sbjct: 203 SAPSDPLDI----------VVT------------------------GPYEKPSLSAQPGP 228

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            +  G    + C              ++G     R P       +F +   +   +  H 
Sbjct: 229 KVQAGESVTLSCSSR--SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HG 284

Query: 264 GEYTCVASNTAAQARYS 280
           G Y C  S   +   +S
Sbjct: 285 GTYRCFGSFRHSPYEWS 301

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 55.1 bits (132), Expect = 3e-09
 Identities = 27/229 (11%), Positives = 55/229 (24%), Gaps = 71/229 (31%)

Query: 88  TCEITP-YDSGPYLIAWFKDGRQIP-------------------GRTSST---------S 118
            C + P   +    + W     +                     GRTS           +
Sbjct: 25  PCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAA 84

Query: 119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPV 178
           L I+ V   D G Y C  +  D                                      
Sbjct: 85  LRIHNVTASDSGKYLCYFQDGDFY------------------------------------ 108

Query: 179 AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSP 237
                E+   E     + S         +     + C  T   P   I+W  + G+ +  
Sbjct: 109 -----EKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPT 163

Query: 238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                V+D     ++ +   +  +     +C   ++      ++ + + 
Sbjct: 164 VEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGLEKTASISIA 212

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 39.7 bits (92), Expect = 5e-04
 Identities = 15/84 (17%), Positives = 28/84 (33%), Gaps = 4/84 (4%)

Query: 10  IEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNIS 68
           ++        + L+C ++G  P P I W+ +  E        +     G   V + V   
Sbjct: 126 VDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVI-- 183

Query: 69  HVTVEDGGEYACVAENRAGTCEIT 92
            +    G   +C   +     E T
Sbjct: 184 -MRGSSGEGVSCTIRSSLLGLEKT 206

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 52.3 bits (125), Expect = 2e-08
 Identities = 30/172 (17%), Positives = 47/172 (27%), Gaps = 48/172 (27%)

Query: 114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLS 173
           T S SL ++ +  ED G Y+                  L  L       +VT       +
Sbjct: 67  TQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLR----NIQVTNHSQLFQN 122

Query: 174 IKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK 233
           + C +                                  + C V   D  ++ RW   G 
Sbjct: 123 MTCEL---------------------------------HLTCSVEDADDNVSFRWEALGN 149

Query: 234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            LS           S  +L        +   +YTC+A N  +   +S   Q 
Sbjct: 150 TLS-----------SQPNLTVSWDPRISSEQDYTCIAENAVSNLSFSVSAQK 190

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 20/89 (22%), Positives = 35/89 (39%), Gaps = 5/89 (5%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
            P          +  G + +  C    +  P + W  D  EL  + +++       +G+ 
Sbjct: 482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----NGND 537

Query: 62  ISHVNISHVTVEDGGEYACVAENRAGTCE 90
              + I+ V  +D GEY   A+N  GT E
Sbjct: 538 YG-LTINRVKGDDKGEYTVRAKNSYGTKE 565

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 54.1 bits (130), Expect = 2e-08
 Identities = 22/81 (27%), Positives = 30/81 (37%), Gaps = 6/81 (7%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           EG      C V     P  + W KD + L  S ++   +   +     L+IN V     G
Sbjct: 496 EGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKY---MKRYNGNDYGLTINRVKGDDKG 551

Query: 265 EYTCVASNTAAQARYSSKLQV 285
           EYT  A N+         L V
Sbjct: 552 EYTVRAKNSYGTKEEIVFLNV 572

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 17/71 (23%), Positives = 25/71 (35%), Gaps = 11/71 (15%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRTSST--------SLVINPVGREDRGIYQCIARRS 139
            C +      P  + W KD R++                L IN V  +D+G Y   A+ S
Sbjct: 503 YCRVIASSP-PV-VTWHKDDRELKQSVKYMKRYNGNDYGLTINRVKGDDKGEYTVRAKNS 560

Query: 140 DGDVAQGSAEL 150
            G   +    L
Sbjct: 561 YGT-KEEIVFL 570

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 50.4 bits (120), Expect = 3e-08
 Identities = 14/93 (15%), Positives = 24/93 (25%), Gaps = 11/93 (11%)

Query: 9   FIE----QTLQPGPAVSLKCIASGNP---TPDIGWTLDGFELPTN---NRFVIGQFVSGH 58
           FIE     T++ G  ++             P I W    +    +       + +    H
Sbjct: 10  FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 69

Query: 59  GDVISHV-NISHVTVEDGGEYACVAENRAGTCE 90
             V +    I        G Y C    +     
Sbjct: 70  SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDS 102

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 49.2 bits (117), Expect = 9e-08
 Identities = 16/92 (17%), Positives = 25/92 (27%), Gaps = 12/92 (13%)

Query: 206 PEGARTRVICGVTHGDPPL---TIRWLKDGK---PLSPRFPVNVSDLDSFSSL-----LS 254
             G     I  V   +  L   TI+W K             + + +     S      + 
Sbjct: 20  KVGEDITFIAKVK-AEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQ 78

Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           I       +G Y C  +        S  L+V 
Sbjct: 79  IIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH 110

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 52.1 bits (124), Expect = 3e-08
 Identities = 38/199 (19%), Positives = 55/199 (27%), Gaps = 50/199 (25%)

Query: 94  YDSGPYLIAWFKDGR-QIPG--RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
            ++    +     GR ++ G  +  + SL I     ED G Y     R            
Sbjct: 56  TNNPDRRVKPETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKY------ 109

Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR 210
                          +     L++          EV      P I         L  G  
Sbjct: 110 ---------------SYQQNKLNL----------EVTALIEKPDIHFLEP----LESGRP 140

Query: 211 TRVICGVTH---GDPPLTIRWLKDG-KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           TR+ C +       PPLT  W  +   PL P            SS L++      H    
Sbjct: 141 TRLSCSLPGSCEAGPPLTFSWTGNALSPLDPETTR--------SSELTLTPRPEDHGTNL 192

Query: 267 TCVASNTAAQARYSSKLQV 285
           TC      AQ      +Q+
Sbjct: 193 TCQMKRQGAQVTTERTVQL 211

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.8 bits (116), Expect = 7e-08
 Identities = 19/91 (20%), Positives = 27/91 (29%), Gaps = 12/91 (13%)

Query: 207 EGARTRVICGVTHGDPPL---TIRWLKDGK-PLSPRFPVNVSDLDSF-------SSLLSI 255
            G        V  G   L    ++W K     LS +   ++   DS+          L I
Sbjct: 18  VGGSITFSARVA-GASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHI 76

Query: 256 NSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                A +G Y C  S        +  L V 
Sbjct: 77  TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 48.1 bits (114), Expect = 2e-07
 Identities = 10/93 (10%), Positives = 22/93 (23%), Gaps = 11/93 (11%)

Query: 9  FIE----QTLQPGPAVSLKCIASGNP---TPDIGWTLDGFEL---PTNNRFVIGQFVSGH 58
          F+       +  G +++     +G      P + W    +            +       
Sbjct: 7  FVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRA 66

Query: 59 GDVISHV-NISHVTVEDGGEYACVAENRAGTCE 90
            V     +I+       G Y C    +     
Sbjct: 67 SKVYLFELHITDAQPAFTGSYRCEVSTKDKFDC 99

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A Length = 198

 Score = 50.2 bits (120), Expect = 1e-07
 Identities = 26/201 (12%), Positives = 52/201 (25%), Gaps = 47/201 (23%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
            C+             +++ +  P                I  +  E  G Y+C      
Sbjct: 25  RCQGGQ---ETQEYRLYREKKTAPWITRIPQELVKKGQFPIPSITWEHTGRYRCYYGSDT 81

Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
              ++ S  L+                                  V    + P +   A 
Sbjct: 82  AGRSESSDPLE--------------------------------LVVTGAYIKPTLS--AQ 107

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVS 259
           P   +  G    + C              K+G+   P+   +      S  ++ S+  VS
Sbjct: 108 PSPVVNSGGNVTLQCDS--QVAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVS 165

Query: 260 AAHSGEYTCVASNTAAQARYS 280
            +    Y C A ++ +   +S
Sbjct: 166 PSRRWWYRCYAYDSNSPYEWS 186

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 50.2 bits (119), Expect = 3e-07
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 7/78 (8%)

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           G    + C     +   T+ W+              S        L + SV    SG Y+
Sbjct: 21  GDSVTLTCPGVEPEDNATVHWVLRKPAAGSHP----SRWAGMGRRLLLRSVQLHDSGNYS 76

Query: 268 CVASNTAAQARYSSKLQV 285
           C  +    +   +  L V
Sbjct: 77  CYRAG---RPAGTVHLLV 91

>1n26_A IL-6 receptor alpha chain; transmembrane, glycoprotein, immunoglobulin domain, cytokine; HET: NAG BMA MAN NDG; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.2.1 b.1.2.1 PDB: 1p9m_C 2arw_A Length = 325

 Score = 46.0 bits (108), Expect = 5e-06
 Identities = 16/85 (18%), Positives = 27/85 (31%), Gaps = 9/85 (10%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P    +    T  PG +V+L C          + W L      ++     G        
Sbjct: 6  CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-------- 57

Query: 61 VISHVNISHVTVEDGGEYACVAENR 85
          +   + +  V + D G Y+C    R
Sbjct: 58 MGRRLLLRSVQLHDSGNYSCYRAGR 82

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A Length = 323

 Score = 50.1 bits (119), Expect = 3e-07
 Identities = 47/300 (15%), Positives = 84/300 (28%), Gaps = 30/300 (10%)

Query: 1   TPP--ILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVS 56
           TPP   +  S  +      P + L C+ SG  P    I W  DG  +  +          
Sbjct: 6   TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG 65

Query: 57  GHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP----- 111
                 S + +S         Y C    +  T E +                  P     
Sbjct: 66  ELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDL 125

Query: 112 --GRTSSTSLVINPVGREDRG--IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAI 167
              ++ + + ++  +        +    A     + +    E Q  G   V     V   
Sbjct: 126 FIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVGTR 185

Query: 168 DGE-GLSIKCPV--------AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT 218
           D   G + +C V              +    +  P++ +FA P        RT + C + 
Sbjct: 186 DWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRT-LACLIQ 244

Query: 219 HGDPP-LTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVAS 271
           +  P  ++++WL +   L                     S L +         E+ C A 
Sbjct: 245 NFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAV 304

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 50.5 bits (120), Expect = 3e-07
 Identities = 16/77 (20%), Positives = 27/77 (35%), Gaps = 2/77 (2%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
             +  G   + +C A G         L G ++       I   V+     I+  N+ + T
Sbjct: 174 VEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEI--KVTSSRRFIASFNVVNTT 231

Query: 72  VEDGGEYACVAENRAGT 88
             D G+Y C+     G 
Sbjct: 232 KRDAGKYRCMIRTEGGV 248

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 44.8 bits (105), Expect = 2e-05
 Identities = 20/176 (11%), Positives = 39/176 (22%), Gaps = 39/176 (22%)

Query: 101 IAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL 160
             W   G       +   L I+        +   +                         
Sbjct: 108 PIWNISGDPTR-TWNRAELAISTFWPNFYQVIFEVITSGHQ------------------- 147

Query: 161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG 220
                   G     +  V G+P            +E        +  G      C    G
Sbjct: 148 --------GYLAIDEVKVLGHPCTRTPHFLRIQNVE--------VNAGQFATFQCSA-IG 190

Query: 221 DPPLTIRWLKDGKPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
                 R    G  +   P   + V+    F +  ++ + +   +G+Y C+     
Sbjct: 191 RTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG 246

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens} Length = 731

 Score = 42.5 bits (99), Expect = 1e-04
 Identities = 31/208 (14%), Positives = 57/208 (27%), Gaps = 45/208 (21%)

Query: 20  VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
           +++    +  P  +  W + G    T NR  +   +S        V    +T    G  A
Sbjct: 94  LNVYVKVNNGPLGNPIWNISGDPTRTWNRAEL--AISTFWPNFYQVIFEVITSGHQGYLA 151

Query: 80  C-----------------------VAENRAGTCEITPYDSGPYLIAWFKDG--------- 107
                                   V   +  T + +           +  G         
Sbjct: 152 IDEVKVLGHPCTRTPHFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLK 211

Query: 108 --RQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVT 165
             +    R    S  +    + D G Y+C+ R   G      AEL +   P     P++ 
Sbjct: 212 EIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPVPIAPPQLA 271

Query: 166 AIDGEGLSIK---------CPVAGYPIE 184
           ++    L I+          P+    +E
Sbjct: 272 SVGATYLWIQLNANSINGDGPIVAREVE 299

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 43/329 (13%), Positives = 81/329 (24%), Gaps = 91/329 (27%)

Query: 15  QPGPAVSLKCIASGN-PTPDIGW---------TLDGFELPTNNRFVIGQFVSGHGDVISH 64
             G +  L C  +   P   I W          +   +     R       +   ++   
Sbjct: 16  AAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFS 75

Query: 65  VNISHVTVEDGGEYACVAENRAG------------------------------------- 87
           ++IS++T  D G Y CV   +                                       
Sbjct: 76  ISISNITPADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTV 135

Query: 88  --TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQ 145
             TCE   +      + WFK+G ++    ++                           + 
Sbjct: 136 SFTCESHGFSPRDITLKWFKNGNELSDFQTNVD-----------------PVGESVSYSI 178

Query: 146 GSAELQLGGLPYVRLIPKVTAIDGE-GLSIKCPV------AGYPIEEVHWEKVPPKIESF 198
            S               KV     +    + C V              +  +      + 
Sbjct: 179 HS---TA----------KVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTL 225

Query: 199 AFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD----SFSSLL 253
                 +    +  V C V    P  L + WL++G          V++      ++ S L
Sbjct: 226 EVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMSWL 285

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSK 282
            +N  +     + TC   +    A   S 
Sbjct: 286 LVNVSAHRDDVKLTCQVEHDGQPAVSKSH 314

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens} Length = 327

 Score = 41.1 bits (96), Expect = 3e-04
 Identities = 23/156 (14%), Positives = 39/156 (25%), Gaps = 38/156 (24%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGH 58
            P     S       P   VS  C + G +P    + W  +G EL      V     S  
Sbjct: 116 KPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPVGESVS 175

Query: 59  GDVISHVNISHVTVEDGGEYACVAENRAG------------------------------- 87
             + S   +     +   +  C   +                                  
Sbjct: 176 YSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAE 235

Query: 88  -----TCEITPYDSGPYLIAWFKDGRQIPGRTSSTS 118
                TC++  +      + W ++G      T+ST 
Sbjct: 236 NQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTV 271

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 47.5 bits (113), Expect = 8e-07
 Identities = 29/178 (16%), Positives = 48/178 (26%), Gaps = 44/178 (24%)

Query: 103 WFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP 162
             K             L I  + R   G Y+C  +      +  S +L+L          
Sbjct: 40  LEKLSSSRYQ--DQAVLFIPAMKRSLAGRYRCSYQNGSL-WSLPSDQLEL---------- 86

Query: 163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP 222
                                         P +   A P   +  G    + C       
Sbjct: 87  ----------------------VATGVFAKPSLS--AQPGPAVSSGGDVTLQCQTR--YG 120

Query: 223 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
                  K+G P   + P        + +   I +V+AAHSG Y C + ++     +S
Sbjct: 121 FDQFALYKEGDPAPYKNPER-----WYRASFPIITVTAAHSGTYRCYSFSSRDPYLWS 173

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 19/113 (16%), Positives = 28/113 (24%), Gaps = 38/113 (33%)

Query: 67  ISHVTVEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA---------------- 102
           I  +     G Y C  +N +             T   + P L A                
Sbjct: 56  IPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPGPAVSSGGDVTLQC 115

Query: 103 ----------WFKDGRQIPGRTSS----TSLVINPVGREDRGIYQCIARRSDG 141
                      +K+G   P +        S  I  V     G Y+C +  S  
Sbjct: 116 QTRYGFDQFALYKEGDPAPYKNPERWYRASFPIITVTAAHSGTYRCYSFSSRD 168

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 47.8 bits (113), Expect = 1e-06
 Identities = 35/197 (17%), Positives = 56/197 (28%), Gaps = 43/197 (21%)

Query: 93  PYDSGPYLIAWFKDGRQIPGRTSST-----------SLVINPVGREDRGIYQCIARRSDG 141
                   +  F    Q   R  +            SL +  +  E+ G Y+C    +  
Sbjct: 47  LTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPL 106

Query: 142 DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG-YPIE-EVHWEKVPPKIESFA 199
             AQG+ +L++   P  RL+     +        C  +G YP    + WEK         
Sbjct: 107 -KAQGTVQLEVVASPASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEK--------- 156

Query: 200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
                        +   V  G          DG      F        + +S L +NS  
Sbjct: 157 ---QTQKFPHPIEISEDVITGPTIKN----MDGT-----F--------NVTSCLKLNSSQ 196

Query: 260 AAHSGEYTCVASNTAAQ 276
                 Y CV  + +  
Sbjct: 197 EDPGTVYQCVVRHASLH 213

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 45.4 bits (107), Expect = 2e-06
 Identities = 17/88 (19%), Positives = 37/88 (42%), Gaps = 12/88 (13%)

Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGW--------TLDGFELPTNNRFVIGQF 54
            LT      T++ G  ++LKC+ S      + W         L+ + +  N+++ +   
Sbjct: 2  GSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHH 61

Query: 55 VSGHGDVISHVNISHVTVEDGGEYACVA 82
           +        + + +VT++D G Y C+ 
Sbjct: 62 SANQL----SITVPNVTLQDEGVYKCLH 85

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 16/122 (13%), Positives = 39/122 (31%), Gaps = 33/122 (27%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
           +T  +G+ L++KC  +      + W                         I    +    
Sbjct: 11  ITVEEGQTLTLKCVTSLRKNSSLQWLTP------------------SGFTIFLNEY---- 48

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
                LK+      ++ +     +  S  +++ +V+    G Y C+   + + +    K+
Sbjct: 49  ---PVLKN-----SKYQLLHHSANQLS--ITVPNVTLQDEGVYKCLH-YSDSVSTKEVKV 97

Query: 284 QV 285
            V
Sbjct: 98  IV 99

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A* Length = 210

 Score = 46.4 bits (109), Expect = 2e-06
 Identities = 16/81 (19%), Positives = 34/81 (41%), Gaps = 6/81 (7%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +  GA  ++ C +   D   +++W      L           D+  S+L++ + S + +G
Sbjct: 19  VALGASRQLTCRLACADRGASVQWRGLDTSLG------AVQSDTGRSVLTVRNASLSAAG 72

Query: 265 EYTCVASNTAAQARYSSKLQV 285
              CV S      +++ +L V
Sbjct: 73  TRVCVGSCGGRTFQHTVQLLV 93

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 Length = 291

 Score = 46.4 bits (109), Expect = 4e-06
 Identities = 32/319 (10%), Positives = 78/319 (24%), Gaps = 90/319 (28%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           +  L  G +V + C  S +    +G              +  + +   G+      +S+V
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPKLLGI----------ETPLPKKELLLPGNNRKVYELSNV 57

Query: 71  TVEDGGEYACVAENRAGTC---------------EITPYDSGPYL--------------- 100
              +  +  C +    G                 E+ P  S   +               
Sbjct: 58  Q--EDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAP 115

Query: 101 -----IAWFKDGRQIPGRT-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL 150
                +   +  +++         +  +  +          + C                
Sbjct: 116 RANLTVVLLRGEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELD----------- 164

Query: 151 QLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWE-KVPPKIESFAFPFDGLPEGA 209
                           +  +GL +    +     +       PP++ S       L    
Sbjct: 165 ----------------LRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRV----LEVDT 204

Query: 210 RTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           +  V+C +  G  P     +      + L+P      +D  S  + +S+ +     +   
Sbjct: 205 QGTVVCSL-DGLFPVSEAQVHLALGDQRLNP-TVTYGNDSFSAKASVSV-TAEDEGTQRL 261

Query: 267 TCVASNTAAQARYSSKLQV 285
           TC              + +
Sbjct: 262 TCAVILGNQSQETLQTVTI 280

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens} Length = 196

 Score = 45.2 bits (107), Expect = 5e-06
 Identities = 26/194 (13%), Positives = 47/194 (24%), Gaps = 44/194 (22%)

Query: 95  DSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGS 147
                     K+    P          +     I  +  +  G Y+C  R   G     S
Sbjct: 29  TLEAREYRLDKEESPAPWDRQNPLEPKNKARFSIPSMTEDYAGRYRCYYRSPVGWSQP-S 87

Query: 148 AELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPE 207
             L+L                                 +      P +   A P   +  
Sbjct: 88  DPLEL--------------------------------VMTGAYSKPTL--SALPSPLVTS 113

Query: 208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT 267
           G    ++C      P  T    K+          +        +   ++ V++ H G Y 
Sbjct: 114 GKSVTLLCQS--RSPMDTFLLCKERAAHPLLCLRSEHGAQQHQAEFPMSPVTSVHGGTYR 171

Query: 268 CVASNTAAQARYSS 281
           C +S+  +    S 
Sbjct: 172 CFSSHGFSHYLLSH 185

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 45.7 bits (108), Expect = 6e-06
 Identities = 29/201 (14%), Positives = 45/201 (22%), Gaps = 52/201 (25%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
            C+      G        +G            R +     I  +     G Y CI R   
Sbjct: 27  CCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVG- 82

Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
                                        E  S         ++ V  E       S   
Sbjct: 83  -----------------------------ELWSEPS----NLLDLVVTEMYDTPTLS-VH 108

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
           P   +  G +    C +           LK+G+    +            +   +  V+ 
Sbjct: 109 PGPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTT 161

Query: 261 AHSGEYTCVASNTAAQARYSS 281
           AH G Y C  S       + S
Sbjct: 162 AHRGTYRCFGSYNNHAWSFPS 182

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 39.9 bits (93), Expect = 4e-04
 Identities = 25/166 (15%), Positives = 43/166 (25%), Gaps = 43/166 (25%)

Query: 67  ISHVTVEDGGEYACVAENRAGTCE--------ITPYDSGPYLIA---------------- 102
           I  +     G+Y+C+        E        +T     P L                  
Sbjct: 64  IPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYC 123

Query: 103 ----------WFKDGRQIPGRTSSTS----LVINPVGREDRGIYQCIARRSDGDVAQGSA 148
                       K+GR    +           + PV    RG Y+C    ++   +  S 
Sbjct: 124 RLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSE 183

Query: 149 ELQL---GGLPYVRLIP-KVTAIDGEGLSIKCPV-AGYPIEEVHWE 189
            ++L   G +    L P   T       +       G   +   W+
Sbjct: 184 PVKLLVTGDIENTSLAPEDPTFPADTWGTYLLTTETGLQKDHALWD 229

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 44.5 bits (105), Expect = 9e-06
 Identities = 24/195 (12%), Positives = 51/195 (26%), Gaps = 68/195 (34%)

Query: 94  YDSGPYLIAWFKDGRQIP------GR----TSSTSLVINPVGREDRGIYQCIARRSDGDV 143
           + +   ++ +F +G++         R     ++ +L I  V +EDRG Y           
Sbjct: 36  HTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNGALRIYNVSKEDRGDYYMRM--LHETE 93

Query: 144 AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
            Q    +++    Y  +                                P I        
Sbjct: 94  DQWKITMEV----YEMV------------------------------SKPMIYW------ 113

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
              E +   + C V  G     ++  +  + L                  +++       
Sbjct: 114 ---ECSNATLTCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLR 157

Query: 264 GEYTCVASNTAAQAR 278
             + C A N  +Q  
Sbjct: 158 APFKCKAVNRVSQES 172

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 39.9 bits (93), Expect = 3e-04
 Identities = 13/98 (13%), Positives = 27/98 (27%), Gaps = 32/98 (32%)

Query: 67  ISHVTVEDGGEYACVAENRAG---------------------------TCEITPYDSGPY 99
           I +V+ ED G+Y     +                              TCE+   +    
Sbjct: 73  IYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVL--EGTDV 130

Query: 100 LIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR 137
            +  ++    +    S     ++      R  ++C A 
Sbjct: 131 ELKLYQGKEHL---RSLRQKTMSYQWTNLRAPFKCKAV 165

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens} Length = 196

 Score = 44.5 bits (105), Expect = 1e-05
 Identities = 28/194 (14%), Positives = 46/194 (23%), Gaps = 48/194 (24%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSD 140
            C+ T            K+G   P  T       +     I  +     G Y+C      
Sbjct: 25  RCQGTL---EAQEYRLVKEGSPEPWDTQNPLEPKNKARFSIPSMTEHHAGRYRCYYYSPA 81

Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
           G  ++ S  L+L                                 V      P +   A 
Sbjct: 82  G-WSEPSDPLEL--------------------------------VVTGFYNKPTLS--AL 106

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVS 259
           P   +  G    + CG             ++G         +       F +L  +  V+
Sbjct: 107 PSPVVTSGENVTLQCGS--RLRFDRFILTEEGDHKLSWTLDSQLTPSGQFQALFPVGPVT 164

Query: 260 AAHSGEYTCVASNT 273
            +H     C  S  
Sbjct: 165 PSHRWMLRCYGSRR 178

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 44.0 bits (104), Expect = 1e-05
 Identities = 28/193 (14%), Positives = 45/193 (23%), Gaps = 52/193 (26%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIP-------GRTSSTSLVINPVGREDRGIYQCIARRSD 140
            C+      G        +G            R +     I  +     G Y CI R  +
Sbjct: 24  CCQGNY---GAVEYQLHFEGSLFAVDRPKPPERINKVKFYIPDMNSRMAGQYSCIYRVGE 80

Query: 141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF 200
              ++ S  L L                                 V      P +     
Sbjct: 81  L-WSEPSNLLDL--------------------------------VVTEMYDTPTLS--VH 105

Query: 201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA 260
           P   +  G +    C +           LK+G+    +            +   +  V+ 
Sbjct: 106 PGPEVISGEKVTFYCRL--DTATSMFLLLKEGRSSHVQ-----RGYGKVQAEFPLGPVTT 158

Query: 261 AHSGEYTCVASNT 273
           AH G Y C  S  
Sbjct: 159 AHRGTYRCFGSYN 171

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 44.6 bits (105), Expect = 1e-05
 Identities = 25/197 (12%), Positives = 48/197 (24%), Gaps = 49/197 (24%)

Query: 95  DSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
           D         ++G+               S  +  I P+ ++  G Y+C    +      
Sbjct: 31  DVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPYQL 90

Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
              S  L +                                 +      P +   A P  
Sbjct: 91  SAPSDPLDI--------------------------------VITGLYEKPSLS--AQPGP 116

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            +  G    + C              ++G+    RF        +F +   +   +  H 
Sbjct: 117 TVLAGESVTLSCSS--RSSYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HG 172

Query: 264 GEYTCVASNTAAQARYS 280
           G Y C  S   +   +S
Sbjct: 173 GTYRCFGSFRDSPYEWS 189

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 257

 Score = 39.2 bits (91), Expect = 8e-04
 Identities = 11/65 (16%), Positives = 20/65 (30%), Gaps = 1/65 (1%)

Query: 219 HGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
             D         ++GK       +         +  SI  +    +G Y C  S T +  
Sbjct: 29  WSDVRFQHFLLHREGKFKDTLHLIGEHHDGVSKANFSIGPMMQDLAGTYRCYGSVTHSPY 88

Query: 278 RYSSK 282
           + S+ 
Sbjct: 89  QLSAP 93

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 43.8 bits (103), Expect = 1e-05
 Identities = 22/181 (12%), Positives = 44/181 (24%), Gaps = 61/181 (33%)

Query: 94  YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG 153
            +S     + FK+   +   T S SL I  +   D   Y+  +          + +  L 
Sbjct: 39  ENSEFRAFSSFKNRVYLD--TVSGSLTIYNLTSSDEDEYEMESPNITD-----TMKFFL- 90

Query: 154 GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRV 213
                 ++  V+                           P I           E +   +
Sbjct: 91  -----YVLEMVS--------------------------KPMIYW---------ECSNATL 110

Query: 214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT 273
            C V  G     ++  +  + L                  +++         + C A N 
Sbjct: 111 TCEVLEGTDV-ELKLYQGKEHLRS------------LRQKTMSYQWTNLRAPFKCKAVNR 157

Query: 274 A 274
            
Sbjct: 158 V 158

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 43.0 bits (101), Expect = 2e-05
 Identities = 19/144 (13%), Positives = 37/144 (25%), Gaps = 36/144 (25%)

Query: 25  IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-----ISHVTVEDGGEYA 79
           + S  P  ++ W     ++          F S    V          I ++T  D  EY 
Sbjct: 17  VPSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSDEDEYE 76

Query: 80  CVAENRAG--------------------------TCEITPYDSGPYLIAWFKDGRQIPGR 113
             + N                             TCE+   +     +  ++    +   
Sbjct: 77  MESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVL--EGTDVELKLYQGKEHL--- 131

Query: 114 TSSTSLVINPVGREDRGIYQCIAR 137
            S     ++      R  ++C A 
Sbjct: 132 RSLRQKTMSYQWTNLRAPFKCKAV 155

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 44.1 bits (104), Expect = 2e-05
 Identities = 32/183 (17%), Positives = 54/183 (29%), Gaps = 50/183 (27%)

Query: 103 WFKDGRQIPGRTSST-SLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGGL---PY 157
           + + GR++     +    VI+ +     G YQC  R          + EL + GL   P+
Sbjct: 49  YREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPF 108

Query: 158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV 217
           +     +  + GE +S+ C                    S   PFD              
Sbjct: 109 LSADRGLVLMPGENISLTC-------------------SSAHIPFD-------------- 135

Query: 218 THGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA 277
                       K+G+   P+            +  S+  V    SG Y C      +  
Sbjct: 136 -------RFSLAKEGELSLPQHQSG-----EHPANFSLGPVDLNVSGIYRCYGWYNRSPY 183

Query: 278 RYS 280
            +S
Sbjct: 184 LWS 186

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.6 bits (100), Expect = 5e-05
 Identities = 14/93 (15%), Positives = 28/93 (30%), Gaps = 2/93 (2%)

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
           P     A     +P     ++ C          +  +K+         +   +       
Sbjct: 8   PMPFISAKSSPVIPLDGSVKIQCQAIREAYLTQLMIIKNSTYREIGRRLKFWNETDPE-- 65

Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
             I+ + A  +G Y C       + RYS  L++
Sbjct: 66  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL 98

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 43.4 bits (102), Expect = 2e-05
 Identities = 24/197 (12%), Positives = 47/197 (23%), Gaps = 49/197 (24%)

Query: 95  DSGPYLIAWFKDGRQIP---------GRTSSTSLVINPVGREDRGIYQCIARRSDGDVA- 144
           D         ++G                S  +  I+ + ++  G Y+C    +      
Sbjct: 32  DVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVTHSPYQV 91

Query: 145 -QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD 203
              S  L +           +  +                          K    A P  
Sbjct: 92  SAPSDPLDI----------VIIGL------------------------YEKPSLSAQPGP 117

Query: 204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHS 263
            +  G    + C              ++G+    R P       +F +   +   +  H 
Sbjct: 118 TVLAGENVTLSCSSR--SSYDMYHLSREGEAHERRLPAGPKVNGTFQADFPLGPAT--HG 173

Query: 264 GEYTCVASNTAAQARYS 280
           G Y C  S   +   +S
Sbjct: 174 GTYRCFGSFHDSPYEWS 190

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A Length = 201

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 4/85 (4%)

Query: 199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKPLSPRFPVNVSDLDSFSSLLSINS 257
           A P   +       + C     D       L ++G        +         +  SI+ 
Sbjct: 13  AHPGPLVKSEETVILQC---WSDVMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISR 69

Query: 258 VSAAHSGEYTCVASNTAAQARYSSK 282
           ++   +G Y C  S T +  + S+ 
Sbjct: 70  MTQDLAGTYRCYGSVTHSPYQVSAP 94

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens} Length = 196

 Score = 42.8 bits (100), Expect = 4e-05
 Identities = 15/84 (17%), Positives = 24/84 (28%), Gaps = 3/84 (3%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPR-FPVNVSDLDS 248
            P            P G    + C V    P   LT+  L+  + L  R F         
Sbjct: 88  RPDRVELMPLPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARG 147

Query: 249 FSSLLSINSVSAAHSGEYTCVASN 272
                ++ +    H   ++C A  
Sbjct: 148 AVLTATVLARREDHGANFSCRAEL 171

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 41.0 bits (96), Expect = 4e-05
 Identities = 12/72 (16%), Positives = 25/72 (34%), Gaps = 4/72 (5%)

Query: 13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF----VSGHGDVISHVNIS 68
          T+  G    L C    N    + W+    +    +     +     +         +++S
Sbjct: 17 TVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASWHELSISVS 76

Query: 69 HVTVEDGGEYAC 80
           V++ D G+Y C
Sbjct: 77 DVSLSDEGQYTC 88

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens} Length = 523

 Score = 42.1 bits (99), Expect = 1e-04
 Identities = 49/295 (16%), Positives = 83/295 (28%), Gaps = 49/295 (16%)

Query: 15  QPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNR-FVIGQFVSGHGDVISHVNISHVT 71
                 +L C+ S   P    + W  DG  +          +  +      S+++++   
Sbjct: 127 LQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPSKQSNNKYAASSYLSLTPEQ 186

Query: 72  VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI 131
            +    Y+C   +   T E T   +                 T   S+       +    
Sbjct: 187 WKSHRSYSCQVTHEGSTVEKTVAPTEC------------SASTKGPSVFPLAPSSKSTSG 234

Query: 132 YQ----CIAR---------------RSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGL 172
                 C+ +                + G V    A LQ  GL  +  +  V +      
Sbjct: 235 GTAALGCLVKDYFPQPVTVSWNSGALTSG-VHTFPAVLQSSGLYSLSSVVTVPSSSLGTQ 293

Query: 173 SIKCPVAGYPIEEVHWEKVPPK---IESFAFP---FDGLPEGARTRVIC---GVTHGDPP 223
           +  C V  +       +K          F FP    D L       V C    V+H DP 
Sbjct: 294 TYICNVN-HKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQ 352

Query: 224 LTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
           +   W  DG  +            +      S+L++   +     EY C  SN A
Sbjct: 353 VKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKA 407

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score = 39.4 bits (91), Expect = 3e-04
 Identities = 15/79 (18%), Positives = 27/79 (34%), Gaps = 4/79 (5%)

Query: 12  QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQF----VSGHGDVISHVNI 67
           +T+  G  V LKC    +    + W+    +          +     +         ++I
Sbjct: 48  ETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTPHELSISI 107

Query: 68  SHVTVEDGGEYACVAENRA 86
           S+V + D GEY C      
Sbjct: 108 SNVALADEGEYTCSIFTMP 126

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 434

 Score = 40.7 bits (95), Expect = 4e-04
 Identities = 23/135 (17%), Positives = 39/135 (28%), Gaps = 24/135 (17%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES--------------FAFP---FDGLP 206
           V +      ++ C VA         +K+ P+                 F FP    D L 
Sbjct: 184 VPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLL 243

Query: 207 EGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPV----NVSDLDSFSSLLSINSVS 259
                +V C    ++  DP +   W  D   +            +      S L I    
Sbjct: 244 ITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQD 303

Query: 260 AAHSGEYTCVASNTA 274
             +  E+ C  ++ A
Sbjct: 304 WLNGKEFKCRVNSAA 318

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus} Length = 231

 Score = 40.0 bits (93), Expect = 4e-04
 Identities = 21/148 (14%), Positives = 41/148 (27%), Gaps = 40/148 (27%)

Query: 14  LQPGPAVSLKCIASGNPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           L       L+C+    P+     + WT +       +  V+ +  +G     S V +S  
Sbjct: 25  LYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQ 84

Query: 71  TVEDGGEYACVAENRAG-------------------------------------TCEITP 93
               G  + C  ++                                        +C +  
Sbjct: 85  DWLSGERFTCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRG 144

Query: 94  YDSGPYLIAWFKDGRQIPGRTSSTSLVI 121
           +      I W +D R +P     T+ V+
Sbjct: 145 FRPRDIEIRWLRDHRAVPATEFVTTAVL 172

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D* Length = 239

 Score = 39.9 bits (93), Expect = 5e-04
 Identities = 13/80 (16%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 11  EQTLQPGPAVSLKCIASGNPTPD----IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN 66
           +  L  G    + C+       D      W +D  E+ T       +  +     +S + 
Sbjct: 26  KDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELP 85

Query: 67  ISHVTVEDGGEYACVAENRA 86
           I      +G  + C   + A
Sbjct: 86  IVERDWLNGKTFKCKVNSGA 105

>1xiw_A T-cell surface glycoprotein CD3 epsilon chain; CD3-epsilon, CD3-delta, UCHT1-SCFV, immunoglobulin fold, antibody-antigen complex; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 105

 Score = 37.5 bits (86), Expect = 7e-04
 Identities = 14/65 (21%), Positives = 18/65 (27%), Gaps = 12/65 (18%)

Query: 88  TCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRS 139
           TC   P       I W  + + I G               +      E  G Y C  R S
Sbjct: 27  TCPQYPGSE----ILWQHNDKNIGGDEDDKNIGSDEDHLSLKEFSELEQSGYYVCYPRGS 82

Query: 140 DGDVA 144
             + A
Sbjct: 83  KPEDA 87

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A Length = 207

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 28/216 (12%), Positives = 58/216 (26%), Gaps = 57/216 (26%)

Query: 88  TCEITPYDSGPYL--IAWFKDG------------RQIPGRTSSTS-LVINPVGREDRGIY 132
           TC +            +WF D              Q      S S L I      +   +
Sbjct: 24  TCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEF 83

Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
           +C    +                                     P+    I +       
Sbjct: 84  KCRVNSAAFPA---------------------------------PIEKT-ISKTKGRPKA 109

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---- 247
           P++ +   P + + +   + + C +T   P  +T+ W  +G+P    +      +D    
Sbjct: 110 PQVYTLPPPKEQMAKDKVS-LTCMITDFFPEDITVEWESNGQPAE-NYKNTQPIMDTDGS 167

Query: 248 -SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
               S L++   +      +TC   +      ++ K
Sbjct: 168 YFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEK 203

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 Length = 444

 Score = 39.5 bits (92), Expect = 8e-04
 Identities = 31/209 (14%), Positives = 46/209 (22%), Gaps = 36/209 (17%)

Query: 83  ENRAGTCEITPYDSGPYLIAWFKDGR----------QIPGRTSSTSLVINPVGREDRGIY 132
            +    C +  Y   P  + W                     + +S V            
Sbjct: 139 SSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSI 198

Query: 133 QCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP 192
            C                        + I             KCP A   +        P
Sbjct: 199 TCNVAHPASST------------KVDKKIEPRGPTIKPCPPCKCP-APNLLGGPSVFIFP 245

Query: 193 PKIESFAFPFDGLPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-- 247
           PKI+      D L       V C    V+  DP + I W  +   +         +    
Sbjct: 246 PKIK------DVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNS 299

Query: 248 --SFSSLLSINSVSAAHSGEYTCVASNTA 274
                S L I         E+ C  +N  
Sbjct: 300 TLRVVSALPIQHQDWMSGKEFKCKVNNKD 328

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	286
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	100.0
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	100.0
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	100.0
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	100.0
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	100.0
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	100.0
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.98
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.98
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	99.98
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.98
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.97
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.97
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.97
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.97
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.97
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.97
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.96
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.96
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.95
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.95
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.95
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.95
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.95
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.95
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.95
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.94
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.94
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.94
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.94
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.94
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.93
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.93
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.93
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.93
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.92
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.92
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.92
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.92
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.92
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.92
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.92
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.91
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.91
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.91
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.91
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.91
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.91
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.9
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.9
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.9
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.89
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.89
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.89
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.89
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.89
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.88
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.88
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.88
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.88
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.88
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.88
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.88
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.87
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.87
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.86
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.86
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.86
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.86
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.86
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.86
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.85
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.85
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.85
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.85
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.85
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.85
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.84
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.84
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.84
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.84
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.84
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.84
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.83
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.83
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.83
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.83
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.83
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.83
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.82
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.82
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.82
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.82
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.82
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.82
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.82
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.82
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.82
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.81
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.81
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.81
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.81
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.81
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.81
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.81
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.81
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.81
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.8
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.8
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.8
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.8
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.8
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.8
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.79
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.79
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.79
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.78
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.78
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.78
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.78
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.78
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.78
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.78
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.78
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.78
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.78
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.78
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.77
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.77
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.77
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.77
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.77
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.77
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.77
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.77
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.76
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.76
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.76
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.76
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.75
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.75
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.75
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.74
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.74
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.74
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.74
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.74
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.74
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.74
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.73
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.73
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.73
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.73
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.72
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.72
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.72
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.72
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.72
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.72
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.72
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.71
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.71
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.71
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.71
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.71
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.71
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.71
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.7
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.7
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.7
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.7
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.69
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.69
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.69
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.69
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.68
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.68
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.68
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.67
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.67
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.67
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.67
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.67
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.66
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.66
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.66
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.66
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.66
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.66
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.65
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.65
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.65
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.65
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.64
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.64
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.64
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.64
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.63
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.63
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.62
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.62
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.61
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.61
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.61
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.61
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.6
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.6
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.6
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.6
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.59
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.59
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.59
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.58
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.58
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.58
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.58
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.58
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.58
1he7_A	126	High affinity nerve growth factor receptor; transf	99.58
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.58
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.58
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.58
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.58
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.57
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.57
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.57
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.57
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.57
1he7_A	126	High affinity nerve growth factor receptor; transf	99.57
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.57
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.56
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.56
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.56
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.56
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.56
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.56
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.55
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.55
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.55
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.55
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.54
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.54
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.54
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.54
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.54
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.54
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.54
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.54
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.54
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.53
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.53
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.53
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.53
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.52
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.52
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.52
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.52
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.52
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.51
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.51
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.51
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.51
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.51
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.5
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.5
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.5
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.5
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.5
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.5
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.49
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.49
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.49
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.49
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.49
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.49
2ens_A	96	Advanced glycosylation END product-specific recept	99.49
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.48
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.48
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.48
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.48
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.48
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.48
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.48
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.47
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.47
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.46
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.46
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.46
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.46
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.46
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.46
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.46
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.44
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.44
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.44
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.43
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.43
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.43
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.43
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.43
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.42
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.42
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.41
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.41
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.4
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.39
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.39
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.39
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.39
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.39
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.38
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.38
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.38
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.38
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.38
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.37
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.37
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.36
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.36
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.36
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.36
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.35
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.35
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.34
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.34
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.32
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.32
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.31
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.31
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.3
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.3
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.3
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.29
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.29
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.29
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.29
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.28
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.28
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.28
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.28
2ens_A	96	Advanced glycosylation END product-specific recept	99.27
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.26
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.26
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.26
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.26
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.26
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.26
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.26
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.25
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.25
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.25
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.24
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.24
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.24
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.24
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.24
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.23
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.23
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.23
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.23
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.22
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.22
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.21
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	99.19
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.18
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.18
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.18
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.18
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.17
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.17
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	99.17
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.16
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	99.16
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.16
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.16
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.15
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.15
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.14
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.14
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.14
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.14
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	99.13
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.13
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.11
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.11
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.11
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.1
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.1
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	99.09
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.09
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.09
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	99.09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.09
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.09
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.09
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.08
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.08
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.08
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	99.07
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.07
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.07
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.07
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.07
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	99.07
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.06
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.06
3khq_A	133	B-cell antigen receptor complex-associated protei	99.06
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.06
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.06
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	99.04
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	99.04
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.04
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	99.04
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.03
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.03
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	99.02
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	99.02
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.02
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.02
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.02
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.01
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.0
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.0
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.0
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.0
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	99.0
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.0
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	98.99
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	98.99
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	98.99
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	98.99
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	98.99
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	98.98
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	98.98
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	98.98
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	98.98
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	98.98
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	98.97
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	98.97
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	98.97
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	98.97
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	98.96
3umt_A	256	SCFV heavy chain and light chain; stability engine	98.95
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	98.95
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	98.95
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	98.95
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	98.95
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	98.95
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	98.95
2d9q_B	313	Granulocyte colony-stimulating factor receptor; cy	98.94
3sob_L	237	Antibody light chain; beta propeller, protein bind	98.94
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	98.94
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	98.93
1i1r_A	303	GP130, interleukin-6 receptor beta chain; cytokine	98.92
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	98.92
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	98.91

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=5.7e-39  Score=293.21  Aligned_cols=277  Identities=24%  Similarity=0.430  Sum_probs=217.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|+.++|.|.+.|.|+|.++|+|||..|..+.++.+..    ..+ ...|.|.+++.+|+|.|+|.
T Consensus       197 pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~i~~~~~~~~~~----~~~-~~~L~i~~v~~~D~G~Y~C~  271 (570)
T 3b43_A          197 PPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL----VEN-TATLTVLKVTKGDAGQYTCY  271 (570)
T ss_dssp             CCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEECCTTSSEEEEE----ETT-EEEEEESSBCGGGCEEEEEE
T ss_pred             CCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEECcCCCcEEEEE----ECC-EEEEEEcccCcccCEEEEEE
Confidence            7888888888899999999999999999999999999999998776664421    111 23599999999999999999


Q ss_pred             EEcCCEEEEEe--------------------------------cCCCCCeeEEEeeCCccCcCCC--------CcceEEE
Q psy15667         82 AENRAGTCEIT--------------------------------PYDSGPYLIAWFKDGRQIPGRT--------SSTSLVI  121 (286)
Q Consensus        82 a~n~~g~~~~~--------------------------------~~~~~~~~~~W~~~g~~l~~~~--------~~~~l~i  121 (286)
                      |.|..|.....                                ..+.+++.+.|+|||..+....        ....|.|
T Consensus       272 a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k~~~~l~~~~~~~~~~~~~~~~L~i  351 (570)
T 3b43_A          272 ASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEM  351 (570)
T ss_dssp             EEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEESSSSCEEEEEETTEECCCSSSEEEEEETTEEEEEE
T ss_pred             EECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEeeCCCCEEEEeECCEECCCCCcEEEEEECCEEEEEE
Confidence            99998864321                                0112456899999999875422        2356999


Q ss_pred             ccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc---
Q psy15667        122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES---  197 (286)
Q Consensus       122 ~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~---  197 (286)
                      .++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+ ...+.+|+.+.|.|.+.|.|.|.+.|.+....+..   
T Consensus       352 ~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~g~~l~~~~~  430 (570)
T 3b43_A          352 YNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKK  430 (570)
T ss_dssp             ESCCGGGCEEEEEEEEBTTBCC-EEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEETTEECCSSSS
T ss_pred             CCCCcccCEEEEEEEEeCCCEE-EEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEECCEECcCCCC
Confidence            9999999999999999999976 457888888877665443 46678899999999999999999999984321100   


Q ss_pred             --------------------------c-------------------------ccccCCCCCCCeEEEEEeeecCCCCCeE
Q psy15667        198 --------------------------F-------------------------AFPFDGLPEGARTRVICGVTHGDPPLTI  226 (286)
Q Consensus       198 --------------------------~-------------------------~~~~~~~~~g~~~~l~c~~~~~~p~~~~  226 (286)
                                                +                         ......+.+|+.+.|.|.+. |.|++.+
T Consensus       431 ~~~~~~~~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~-g~p~~~v  509 (570)
T 3b43_A          431 YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIE-GAEPISV  509 (570)
T ss_dssp             EEEEEETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEE-SCSSCCC
T ss_pred             EEEEEcCCEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEe-cCCCCEE
Confidence                                      0                         00123356799999999985 7889999


Q ss_pred             EEEeCCeeC-CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        227 RWLKDGKPL-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       227 ~W~~~g~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|+|++..+ ....++.+.. ......|.|.++..+|+|.|+|.|.|.+|..+.++.|.|.
T Consensus       510 ~W~k~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~a~L~V~  569 (570)
T 3b43_A          510 AWFKDKGEIVRESDNIWISY-SENIATLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL  569 (570)
T ss_dssp             EEEETTEECCCCTTTEEECC-CSSEEEEEESSCCTTCCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             EEEeCCeEeccCCCeEEEEE-CCCEEEEEECcCCHHHCEEEEEEEEECCcEEEEEEEEEEe
Confidence            999998655 3444444432 2335789999999999999999999999999999999873

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=8.2e-39  Score=292.15  Aligned_cols=277  Identities=27%  Similarity=0.492  Sum_probs=215.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|+.++|.|.+.|+|.|.|.|+|||..|..+.++.+..    .+ ....|.|.+++.+|+|.|+|
T Consensus         4 ~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~----~~-~~~~L~I~~v~~~D~G~Y~C   78 (570)
T 3b43_A            4 EPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQF----KN-NVASLVINKVDHSDVGEYTC   78 (570)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSBCCCCSSEEEEC----CT-TEEEEEESSCCGGGCEEEEE
T ss_pred             CCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEEccCCCCEEEEE----EC-CEEEEEEccCChhhCEEEEE
Confidence            48999988888999999999999999999999999999999998776665421    11 22469999999999999999


Q ss_pred             EEEcCCEEEEEe-----------c-----------------------CCCCCeeEEEeeCCccCcCCC--------Ccce
Q psy15667         81 VAENRAGTCEIT-----------P-----------------------YDSGPYLIAWFKDGRQIPGRT--------SSTS  118 (286)
Q Consensus        81 ~a~n~~g~~~~~-----------~-----------------------~~~~~~~~~W~~~g~~l~~~~--------~~~~  118 (286)
                      .|.|..|.....           +                       .+.+++.+.|+|||..+....        ....
T Consensus        79 ~a~N~~g~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~~~~~~  158 (570)
T 3b43_A           79 KAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYKDGELLKDDANLQTSFIHNVAT  158 (570)
T ss_dssp             EEEETTEEEEEEEEEEECCCCCCCEESSCCCCEEEETTSCEEEEEEEESSSSCEEEEEETTEECCCCSSEEEEEETTEEE
T ss_pred             EEEeCCceEEEEEEEEECCCCCCCcccccCCCeEecCCCeEEEEEEEccCCCCEEEEEECCEECcCCCCEEEEEECCEEE
Confidence            999998854210           0                       112456899999999886422        2367


Q ss_pred             EEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       119 l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      |.|.++..+|+|.|+|.|.|..|.. ...+.|.|..   +|.+...+ ...+.+|+.+.|.|.+.|.|.|.+.|.+....
T Consensus       159 L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~~  237 (570)
T 3b43_A          159 LQILQTDQSHVGQYNCSASNPLGTA-SSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNRE  237 (570)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTEE
T ss_pred             EEECcCChHHCEEEEEEEEeCCcEE-EEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCEE
Confidence            9999999999999999999998875 3456666642   34443333 35567899999999999999999999984221


Q ss_pred             ccc-----------------------------c--------------------------ccccCCCCCCCeEEEEEeeec
Q psy15667        195 IES-----------------------------F--------------------------AFPFDGLPEGARTRVICGVTH  219 (286)
Q Consensus       195 ~~~-----------------------------~--------------------------~~~~~~~~~g~~~~l~c~~~~  219 (286)
                      +..                             +                          ..+...+.+|+.+.|.|.+. 
T Consensus       238 i~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-  316 (570)
T 3b43_A          238 IRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIG-  316 (570)
T ss_dssp             CCTTSSEEEEEETTEEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCEESSCEEEEEEEEE-
T ss_pred             CcCCCcEEEEEECCEEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEEcCCCcEEEEEEEe-
Confidence            100                             0                          00012356799999999985 


Q ss_pred             CCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       220 ~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |.|.+.+.|+|+|..+....++.+.... ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       317 g~P~p~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  381 (570)
T 3b43_A          317 GSPEIKVLWYKDETEIQESSKFRMSFVE-SVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV  381 (570)
T ss_dssp             SSSSCEEEEEETTEECCCSSSEEEEEET-TEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECE
T ss_pred             eCCCCEEEEeECCEECCCCCcEEEEEEC-CEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEe
Confidence            7899999999999999776665544332 3568999999999999999999999999999998876

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=100.00  E-value=1.6e-37  Score=270.35  Aligned_cols=272  Identities=25%  Similarity=0.427  Sum_probs=198.4

Q ss_pred             CCeeEeccccccc---cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccc-ccCCCeE
Q psy15667          2 PPILTYSFIEQTL---QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV-TVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~---~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~   77 (286)
                      +|.|...+.+..+   .+|+.+.|.|.+.|+|.|+|+|+|||.+|.....+...   ..++    .|.|.++ ..+|+|.
T Consensus         5 ~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~---~~~g----~l~i~~~~~~~D~G~   77 (384)
T 3kld_A            5 GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNGTDVDIGMDFRYS---VVDG----SLLINNPNKTQDAGT   77 (384)
T ss_dssp             EEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETTEECCC----CEE---EETT----EEEEESCCHHHHCEE
T ss_pred             CCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECCEECcCCCCccEE---EECC----EEEEcCCCCcccCEE
Confidence            6899999988876   68999999999999999999999999999754332211   1122    2556665 8899999


Q ss_pred             EEEEEEcCCEEEEE-----e-----cC------------------------CCCCeeEEEeeCCccCcCC------CCcc
Q psy15667         78 YACVAENRAGTCEI-----T-----PY------------------------DSGPYLIAWFKDGRQIPGR------TSST  117 (286)
Q Consensus        78 Y~C~a~n~~g~~~~-----~-----~~------------------------~~~~~~~~W~~~g~~l~~~------~~~~  117 (286)
                      |+|.|.|..|....     .     .+                        ..+.+.+.|++|+.++...      ...+
T Consensus        78 Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~  157 (384)
T 3kld_A           78 YQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVSQETG  157 (384)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEEECCCSCCCCCCEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEECTTTC
T ss_pred             EEEEEEcCcccEEecceEEEEecccccccCCCCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEEcCCC
Confidence            99999999886421     0     00                        0123579999999876421      2346


Q ss_pred             eEEEccCCCCCCeeEEEEEEcCCcceeee--eeEEEEc-------CCCce--ecCCceEEecCCCEEEEeeEeeecCCeE
Q psy15667        118 SLVINPVGREDRGIYQCIARRSDGDVAQG--SAELQLG-------GLPYV--RLIPKVTAIDGEGLSIKCPVAGYPIEEV  186 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~--~~~l~v~-------~~~~~--~~~~~~~~~~g~~~~l~c~~~~~p~~~v  186 (286)
                      .|.|.++.++|+|.|+|.|.|..+.....  ...+.+.       ..|.+  .......+.+|+.+.|.|.+.|.|.|.+
T Consensus       158 ~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          158 NLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             cEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence            79999999999999999999987653211  1122221       11212  1223456778999999999999999999


Q ss_pred             EEEEcCC-cccc-------------------------cc-------------------------cccCCCCCCCeEEEEE
Q psy15667        187 HWEKVPP-KIES-------------------------FA-------------------------FPFDGLPEGARTRVIC  215 (286)
Q Consensus       187 ~w~~~~~-~~~~-------------------------~~-------------------------~~~~~~~~g~~~~l~c  215 (286)
                      .|.+... .+..                         |.                         .....+.+|+.+.|.|
T Consensus       238 ~W~k~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C  317 (384)
T 3kld_A          238 LWRRADGKPIARKARRHKSNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWEC  317 (384)
T ss_dssp             EEEETTCCCCCTTCEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEEC
T ss_pred             EEEeCCCccccccceecCCCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEe
Confidence            9998321 1100                         00                         0022357899999999


Q ss_pred             eeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        216 GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       216 ~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .+. |.|.|.+.|+|+|..+....++.+.     .+.|.|.++..+|+|.|+|.|.|.+|...+++.|.|.
T Consensus       318 ~~~-g~P~p~i~W~k~g~~l~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          318 KAN-GRPKPTYRWLKNGDPLLTRDRIQIE-----QGTLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             EEE-EESCCEEEEEETTEECCCBTTEEEE-----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECC-ccCCCeEEEEECCEECCCCccEEEe-----CCEEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            985 7889999999999998766555442     3479999999999999999999999999999999984

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=9.6e-36  Score=248.19  Aligned_cols=239  Identities=26%  Similarity=0.469  Sum_probs=184.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.+.+.|++++..+..+.++.+..    .++ ...|.|.+++.+|+|.|+|
T Consensus         4 ~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----~~~-~~~L~i~~v~~~d~G~Y~C   78 (284)
T 2rik_A            4 APPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTL----VEN-TATLTVLKVTKGDAGQYTC   78 (284)
T ss_dssp             CCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETTEECCSSSSEEEEE----ETT-EEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECCEECcCCCcEEEEE----cCC-EEEEEEecCCcccCEEEEE
Confidence            48999999999999999999999999999999999999999998776665421    111 2369999999999999999


Q ss_pred             EEEcCCEEEEEe--------------------------------cCCCCCeeEEEeeCCccCcCCC--------CcceEE
Q psy15667         81 VAENRAGTCEIT--------------------------------PYDSGPYLIAWFKDGRQIPGRT--------SSTSLV  120 (286)
Q Consensus        81 ~a~n~~g~~~~~--------------------------------~~~~~~~~~~W~~~g~~l~~~~--------~~~~l~  120 (286)
                      .|.|..|.....                                ..+.+.+.+.|++++..+....        ....|.
T Consensus        79 ~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~  158 (284)
T 2rik_A           79 YASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLE  158 (284)
T ss_dssp             EEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETTEECCCSSSEEEEEETTEEEEE
T ss_pred             EEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECCEECcCCCcEEEEEcCCEEEEE
Confidence            999987753210                                0112346799999998875432        235799


Q ss_pred             EccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccc
Q psy15667        121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA  199 (286)
Q Consensus       121 i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~  199 (286)
                      |.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+...+ ...                                  
T Consensus       159 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~----------------------------------  203 (284)
T 2rik_A          159 MYNLSVEDSGDYTCEAHNAAGSA-SSSTSLKVKEPPVFRKKPHPVE----------------------------------  203 (284)
T ss_dssp             ECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCBCCSCCCCEE----------------------------------
T ss_pred             ECCCCcccCEEEEEEEEcCCCce-eEEEEEEEecCCcceeCCCcce----------------------------------
Confidence            99999999999999999998865 446777776665443322 122                                  


Q ss_pred             cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       200 ~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                           +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....
T Consensus       204 -----~~~g~~v~l~C~~~-g~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~  276 (284)
T 2rik_A          204 -----TLKGADVHLECELQ-GTPPFQVSWHKDKRELRSGKKYKIMSE-NFLTSIHILNVDSADIGEYQCKASNDVGSYTC  276 (284)
T ss_dssp             -----ECTTCCEEEEEECB-SSSCCEEEEEETTEEECBTTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             -----ecCCCeEEEEEEEE-ecCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEEcCCCcccCEEEEEEEEeCCCceeE
Confidence                 33455566666553 567788999999998876665555433 23468999999999999999999999999999


Q ss_pred             EEEEEEC
Q psy15667        280 SSKLQVK  286 (286)
Q Consensus       280 ~~~L~V~  286 (286)
                      ++.|.|+
T Consensus       277 ~~~l~V~  283 (284)
T 2rik_A          277 VGSITLK  283 (284)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEEc
Confidence            9999986

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=1.4e-34  Score=274.27  Aligned_cols=268  Identities=32%  Similarity=0.591  Sum_probs=212.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.+...+.++.+.+|++++|.|.+.|+|.+.+.|++||..+.....               .|.|.+++.+|+|.|+|.
T Consensus       343 ~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~---------------~L~i~~v~~~d~G~Y~C~  407 (816)
T 3dmk_A          343 PLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMKDGKAIGHSES---------------VLRIESVKKEDKGMYQCF  407 (816)
T ss_dssp             EEEEEEESSEEECCTTSCEEEEEEEEEECCCEEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEE
T ss_pred             CCceeeCCCceEecCCCCEEEEEEEeccCCCEEEEEECCEECCCCCC---------------EEEEcCCCHHHCEEEEEE
Confidence            45667777888999999999999999999999999999998854321               388999999999999999


Q ss_pred             EEcCCEEEEEe----------------------------------cCCCCCeeEEEeeCCccCcCCCC------------
Q psy15667         82 AENRAGTCEIT----------------------------------PYDSGPYLIAWFKDGRQIPGRTS------------  115 (286)
Q Consensus        82 a~n~~g~~~~~----------------------------------~~~~~~~~~~W~~~g~~l~~~~~------------  115 (286)
                      |.|..|.....                                  ..+.+++.+.|++||..+.....            
T Consensus       408 a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~  487 (816)
T 3dmk_A          408 VRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGD  487 (816)
T ss_dssp             EECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSC
T ss_pred             EECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCC
Confidence            99987754321                                  01123467999999988754211            


Q ss_pred             -cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        116 -STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 -~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                       ...|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...|.+...+...+..|+.+.|.|.+.+.|.+.+.|.+....
T Consensus       488 ~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~  566 (816)
T 3dmk_A          488 VVSYLNITSVHANDGGLYKCIAKSKVGVA-EHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRA  566 (816)
T ss_dssp             EEEEEEESSCCTTTCEEEEEEEEETTEEE-EEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEE
T ss_pred             cEEEEEEeeccccCCEEEEEEEEECCCeE-EEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeE
Confidence             1359999999999999999999998875 45788999888877777777888999999999999999999999983211


Q ss_pred             cc------------------------------------------------------ccccccCCCCCCCeEEEEEeeecC
Q psy15667        195 IE------------------------------------------------------SFAFPFDGLPEGARTRVICGVTHG  220 (286)
Q Consensus       195 ~~------------------------------------------------------~~~~~~~~~~~g~~~~l~c~~~~~  220 (286)
                      +.                                                      ....+...+.+|+.+.|.|.+..+
T Consensus       567 l~~~~~~~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~  646 (816)
T 3dmk_A          567 LPINRKQKVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGG  646 (816)
T ss_dssp             SCCSTTEEECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCS
T ss_pred             cccCCceEEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCC
Confidence            00                                                      000012235679999999998877


Q ss_pred             CCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       221 ~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+++.+.|+|+|..+.......+.........|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus       647 ~~~~~i~W~~~g~~l~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V  711 (816)
T 3dmk_A          647 DLPLNIDWTLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNV  711 (816)
T ss_dssp             SSCCEEEEEETTBCCCGGGTCEEEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECE
T ss_pred             CCCCEEEEEECCeEcCCCCCeeEEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEE
Confidence            77789999999998865545444443445678999999999999999999999999999988876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=100.00  E-value=3.1e-35  Score=255.27  Aligned_cols=270  Identities=25%  Similarity=0.451  Sum_probs=202.4

Q ss_pred             CCeeEeccccccc---cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEccccc-CCC
Q psy15667          2 PPILTYSFIEQTL---QPGPAVSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTV-EDG   75 (286)
Q Consensus         2 ~p~~~~~~~~~~~---~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~-~D~   75 (286)
                      ||.|...+.+.++   .+|++++|.|.+.|+|.+.+.|+|||..+...  .++..      .++   .|.|.++.. +|+
T Consensus         4 ~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g~~~~~~~~~~~~~------~~~---~L~i~~~~~~~D~   74 (382)
T 1cs6_A            4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRL------VAG---DLVISNPVKAKDA   74 (382)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEEE------ETT---EEEEESCCHHHHC
T ss_pred             CCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECCEECCcCCCccEEe------eCC---eEEEecccccccC
Confidence            7999999999886   79999999999999999999999999998743  34432      122   388999987 999


Q ss_pred             eEEEEEEEcCCEEEE-----Ee----c-C------------------------CCCCeeEEEeeCCccCcCC--------
Q psy15667         76 GEYACVAENRAGTCE-----IT----P-Y------------------------DSGPYLIAWFKDGRQIPGR--------  113 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~-----~~----~-~------------------------~~~~~~~~W~~~g~~l~~~--------  113 (286)
                      |.|+|.|.|..|...     +.    + +                        ..+.+.+.|++++..+...        
T Consensus        75 G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~  154 (382)
T 1cs6_A           75 GSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS  154 (382)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEEECCCCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC
T ss_pred             EEEEEEEEcCCcEEEecceEEEeeccccccccCCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEe
Confidence            999999999887532     10    0 0                        0123579999999875321        


Q ss_pred             CCcceEEEccCCCCCCeeEEEEEEcCCccee----eeeeEEEEcC------CCceec--CCceEEecCCCEEEEeeEeee
Q psy15667        114 TSSTSLVINPVGREDRGIYQCIARRSDGDVA----QGSAELQLGG------LPYVRL--IPKVTAIDGEGLSIKCPVAGY  181 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~----~~~~~l~v~~------~~~~~~--~~~~~~~~g~~~~l~c~~~~~  181 (286)
                      .....|.|.++..+|+|.|+|.+.|..|...    .....|.+..      .|.+..  .....+..|+.+.|.|.+.+.
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~  234 (382)
T 1cs6_A          155 QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGN  234 (382)
T ss_dssp             TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEE
T ss_pred             cCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccC
Confidence            1236799999999999999999998764321    1123444321      232322  234667899999999999999


Q ss_pred             cCCeEEEEEcCCcccc-----------------------c-------------------------ccccCCCCCCCeEEE
Q psy15667        182 PIEEVHWEKVPPKIES-----------------------F-------------------------AFPFDGLPEGARTRV  213 (286)
Q Consensus       182 p~~~v~w~~~~~~~~~-----------------------~-------------------------~~~~~~~~~g~~~~l  213 (286)
                      |.+.+.|.+....+..                       +                         ......+.+|+.+.|
T Consensus       235 p~~~i~W~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l  314 (382)
T 1cs6_A          235 PVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRW  314 (382)
T ss_dssp             SCCEEEEEECCSCCSCCCSBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEE
T ss_pred             CCCEEEEEECCcccccEEecCCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEE
Confidence            9999999884322110                       0                         000123567999999


Q ss_pred             EEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       214 ~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.+. |.|.+.+.|+|+|..+....++.+.     .+.|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       315 ~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          315 SCVAS-GKPRPAVRWLRDGQPLASQNRIEVS-----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ECEEE-EESCCEEEEEETTEECCCCSSEEEE-----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEee-eecCCEEEEEECCEECCCCceEEEE-----CCEEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            99884 7888999999999998776555442     3479999999999999999999999999999999884

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=100.00  E-value=1.5e-34  Score=252.47  Aligned_cols=272  Identities=26%  Similarity=0.388  Sum_probs=202.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEccc-----ccC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHV-----TVE   73 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~-----~~~   73 (286)
                      +..|...+.++.+.+|+.++|.|.+.+ .|.+.+.|+|||..+...  .++..    ...+    .|.|.++     +.+
T Consensus        21 ~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~----~~~~----~l~i~~~~~~~~~~~   92 (403)
T 3laf_A           21 SLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDGLILALGMDDRKQQ----LPNG----SLLIQNILHSRHHKP   92 (403)
T ss_dssp             SSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETTEECCTTSCTTEEE----CTTS----CEEECSCCCBTTBCS
T ss_pred             eEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECCEECccCCcccEEE----ecCC----cEEEeeeeccCCCCC
Confidence            456788899999999999999999987 688999999999998642  33322    1122    2556666     788


Q ss_pred             CCeEEEEEEEcCC-EEE-----EEe---------------------------cCCCCCeeEEEeeCCccCcCC-------
Q psy15667         74 DGGEYACVAENRA-GTC-----EIT---------------------------PYDSGPYLIAWFKDGRQIPGR-------  113 (286)
Q Consensus        74 D~G~Y~C~a~n~~-g~~-----~~~---------------------------~~~~~~~~~~W~~~g~~l~~~-------  113 (286)
                      |+|.|+|.|.|.. +..     .+.                           ....+++.+.|+|+|..+...       
T Consensus        93 D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~  172 (403)
T 3laf_A           93 DEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVV  172 (403)
T ss_dssp             SCEEEEEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEE
T ss_pred             cceEEEEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEE
Confidence            9999999998642 221     110                           001234589999999887421       


Q ss_pred             -CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce-------ecCCceEEecCCCEEEEeeEeeecCCe
Q psy15667        114 -TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV-------RLIPKVTAIDGEGLSIKCPVAGYPIEE  185 (286)
Q Consensus       114 -~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~-------~~~~~~~~~~g~~~~l~c~~~~~p~~~  185 (286)
                       .....|.|.++..+|+|.|+|.+.|..+........+.+...|.+       .......+..|+.+.|.|.+.+.|.+.
T Consensus       173 ~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~  252 (403)
T 3laf_A          173 VLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPS  252 (403)
T ss_dssp             ECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCE
T ss_pred             EcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCe
Confidence             124679999999999999999999987765444567777655432       122346677999999999999999999


Q ss_pred             EEEEEcCCcccc---------------------------c-------------------------ccccCCCCCCCeEEE
Q psy15667        186 VHWEKVPPKIES---------------------------F-------------------------AFPFDGLPEGARTRV  213 (286)
Q Consensus       186 v~w~~~~~~~~~---------------------------~-------------------------~~~~~~~~~g~~~~l  213 (286)
                      +.|.+....+..                           +                         ......+.+|+.+.|
T Consensus       253 ~~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l  332 (403)
T 3laf_A          253 FTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEF  332 (403)
T ss_dssp             EEEEETTEECCCSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEE
T ss_pred             EEEEECCeeccCCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEE
Confidence            999983221100                           0                         000223668999999


Q ss_pred             EEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        214 ICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       214 ~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.+. |.|.+.+.|+|+|..+.......+..    ...|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       333 ~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  400 (403)
T 3laf_A          333 ECAVS-GKPVPTVNWMKNGDVVIPSDYFQIVG----GSNLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP  400 (403)
T ss_dssp             CCEEE-EESCCEEEEEETTEECCCSSSEEEET----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECC
T ss_pred             EEEEe-eccCCEEEEEECCEECCCCCcEEEec----CccEEEeccccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            99985 67888999999999887665544432    3579999999999999999999999999999999885

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=2.6e-34  Score=253.05  Aligned_cols=270  Identities=15%  Similarity=0.138  Sum_probs=180.9

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      .+.+.+.++.+.+|+++.|.|.+.|.|.|.+.|++++..++....+..      .......|.|.+++.+|+|.|+|.|.
T Consensus        50 ~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l~~~~~~~~------~~~~~~sL~I~~v~~~D~G~Y~C~a~  123 (423)
T 3qs7_E           50 GTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDL------QNRGVVSMVILKMTETQAGEYLLFIQ  123 (423)
T ss_dssp             ------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEE
T ss_pred             cceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCccCccceecc------ccceEEEEEEeecCcccCEEEEEEEE
Confidence            455666688999999999999999999999999999988765333211      11112358999999999999999999


Q ss_pred             cCCEEEEEe----c--------------------------CCCCCeeEEEeeCCccCcCC---CCcceEEEcc-CCCCCC
Q psy15667         84 NRAGTCEIT----P--------------------------YDSGPYLIAWFKDGRQIPGR---TSSTSLVINP-VGREDR  129 (286)
Q Consensus        84 n~~g~~~~~----~--------------------------~~~~~~~~~W~~~g~~l~~~---~~~~~l~i~~-v~~~d~  129 (286)
                      |..|.....    .                          .+.+++.|+|+|++..+...   .....+.... +..+|+
T Consensus       124 N~~g~~~~~~~l~V~~~p~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~  203 (423)
T 3qs7_E          124 SEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFG  203 (423)
T ss_dssp             C--CEEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCS
T ss_pred             cCCCcEEEEEEEEEecCccccccCCcEeccCCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccC
Confidence            988764321    0                          01245789999998765321   1111111111 257899


Q ss_pred             eeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEee-ecCCeEEEEEcCCcccc-----------
Q psy15667        130 GIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAG-YPIEEVHWEKVPPKIES-----------  197 (286)
Q Consensus       130 G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~-~p~~~v~w~~~~~~~~~-----------  197 (286)
                      |.|+|.|.|..|......+.|.|...|.. ......+.+|+.+.|.|.+.| .|.|.+.|.+....+..           
T Consensus       204 G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~-~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~  282 (423)
T 3qs7_E          204 TDIRCCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYST  282 (423)
T ss_dssp             SCEEEEEECSSCEEEEECEEEESSSCCCS-STTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEET
T ss_pred             eEEEEEEEcCCCCcceeeEEEEEecCCcc-CCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccC
Confidence            99999999999876444567777655543 233567889999999999999 67799999985432100           


Q ss_pred             ---------ccc---------------------------------------ccCCCCCCCeEEEEEeeecCCCCCeEEEE
Q psy15667        198 ---------FAF---------------------------------------PFDGLPEGARTRVICGVTHGDPPLTIRWL  229 (286)
Q Consensus       198 ---------~~~---------------------------------------~~~~~~~g~~~~l~c~~~~~~p~~~~~W~  229 (286)
                               +..                                       ....+.+|+.+.|.|.+. |.|.|.+.|+
T Consensus       283 ~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~-g~P~p~i~W~  361 (423)
T 3qs7_E          283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTWT  361 (423)
T ss_dssp             TTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEE-EESCCEEEEE
T ss_pred             CceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEE-EcCCCeEEEE
Confidence                     000                                       012467899999999985 7788999999


Q ss_pred             eCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        230 KDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       230 ~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      |+|..+.......     .....+.+.....+|+|.|+|.|.|.+|....++.|.|+
T Consensus       362 k~g~~l~~~~~~~-----~~~~~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~  413 (423)
T 3qs7_E          362 FSRKSFPCEQKGL-----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR  413 (423)
T ss_dssp             ETTEEEECBCCBC-----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             ECCEECCCccccc-----cCCcEEEEEecccccCEEEEEEEEcCCceEEEEEEEEEe
Confidence            9999885442100     001122235667899999999999999999999999874

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=100.00  E-value=1.6e-34  Score=251.16  Aligned_cols=266  Identities=25%  Similarity=0.435  Sum_probs=196.3

Q ss_pred             CCCeeEeccccc-cccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCC----
Q psy15667          1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED----   74 (286)
Q Consensus         1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D----   74 (286)
                      .||.|...+.+. .+.+|+.++|.|.+.|+|.|.+.|+| ||..+....++..   ...++    .|.|.+++.+|    
T Consensus         2 ~~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~~~~~~~---~~~~~----~L~i~~~~~~d~~~~   74 (388)
T 2v5m_A            2 KGPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQ---ISSDG----KLVFPPFRAEDYRQE   74 (388)
T ss_dssp             EEEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCCBTTTBE---ECSTT----EEEECCCCGGGCCHH
T ss_pred             CCCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCccccCCCceE---EcCCc----eEEecccChhhcccc
Confidence            379999988875 57899999999999999999999999 7887764333211   11122    48899999997    


Q ss_pred             --CeEEEEEEEcCCEEEE-----Ee----c-----------------------CCC---CCeeEEEeeCCccCcC-----
Q psy15667         75 --GGEYACVAENRAGTCE-----IT----P-----------------------YDS---GPYLIAWFKDGRQIPG-----  112 (286)
Q Consensus        75 --~G~Y~C~a~n~~g~~~-----~~----~-----------------------~~~---~~~~~~W~~~g~~l~~-----  112 (286)
                        +|.|+|.|.|..|...     +.    +                       ...   +.+.+.|++++..+..     
T Consensus        75 ~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~  154 (388)
T 2v5m_A           75 VHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEY  154 (388)
T ss_dssp             HHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCB
T ss_pred             ccCceEEEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCC
Confidence              9999999999988632     11    0                       000   1267999999876532     


Q ss_pred             --C---CCcceEEEccCCCCCC-eeEEEEEEcCCcceeee---eeEEEEcCC-----Ccee--cCCceEEecCCCEEEEe
Q psy15667        113 --R---TSSTSLVINPVGREDR-GIYQCIARRSDGDVAQG---SAELQLGGL-----PYVR--LIPKVTAIDGEGLSIKC  176 (286)
Q Consensus       113 --~---~~~~~l~i~~v~~~d~-G~Y~C~a~~~~g~~~~~---~~~l~v~~~-----~~~~--~~~~~~~~~g~~~~l~c  176 (286)
                        +   .....|.|.++..+|+ |.|+|.+.|..+.....   ...|.|..+     |...  ......+.+|+.+.|.|
T Consensus       155 ~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C  234 (388)
T 2v5m_A          155 DGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLC  234 (388)
T ss_dssp             TTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECC
T ss_pred             CCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEE
Confidence              1   1246799999999999 99999999875432221   134555433     1111  12235678899999999


Q ss_pred             eEeeecCCeEEEEEcCCcc---------------------cc----------c-------------------------cc
Q psy15667        177 PVAGYPIEEVHWEKVPPKI---------------------ES----------F-------------------------AF  200 (286)
Q Consensus       177 ~~~~~p~~~v~w~~~~~~~---------------------~~----------~-------------------------~~  200 (286)
                      .+.|.|.|.+.|.+....+                     ..          |                         ..
T Consensus       235 ~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~  314 (388)
T 2v5m_A          235 PAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDP  314 (388)
T ss_dssp             CCEEESCCEEEEEEECTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEES
T ss_pred             ECCCCCCCEEEEEecCCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCC
Confidence            9999999999999841100                     00          0                         00


Q ss_pred             ccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        201 PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       201 ~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +...+.+|+.+.|.|.+. |.|.+.+.|+|+|..+...           ...|.|.++..+|+|.|+|.|.|..|....+
T Consensus       315 ~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~i~~~-----------~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~  382 (388)
T 2v5m_A          315 PTQTVDFGRPAVFTCQYT-GNPIKTVSWMKDGKAIGHS-----------ESVLRIESVKKEDKGMYQCFVRNDRESAEAS  382 (388)
T ss_dssp             SEEEECTTSCEEEEEEEE-EECCCEEEEEETTEECSCC-----------SSEEEESSCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             CcEEecCCCCEEEEEEec-cccCCeEEEEECCEECccC-----------CCEEEEecCChhhCEEEEEEEEcCCCcEEEE
Confidence            022367899999999984 7788999999999987542           3579999999999999999999999999999


Q ss_pred             EEEEE
Q psy15667        281 SKLQV  285 (286)
Q Consensus       281 ~~L~V  285 (286)
                      +.|.|
T Consensus       383 ~~l~V  387 (388)
T 2v5m_A          383 AELKL  387 (388)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99987

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=100.00  E-value=1.6e-34  Score=251.64  Aligned_cols=271  Identities=23%  Similarity=0.341  Sum_probs=200.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .||.|...+.++.+.+|+.++|.|.+.+ .|.+.+.|+|||..+.... ++..    . ..+  ..|.|.+++.+|+|.|
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~----~-~~~--~~L~i~~~~~~D~G~Y   77 (395)
T 1bih_A            5 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----R-KDE--GSLVFLRPQASDEGHY   77 (395)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE----C-TTS--CCEEESSCCGGGCEEE
T ss_pred             CCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCcCcccccceEEE----e-cCC--ceEEEecCCCCCCcEE
Confidence            4899999999999999999999999998 8999999999999887554 2221    1 112  1488999999999999


Q ss_pred             EEEEEcCCEEEE-----Ee------c-------------------C---CCCCeeEEEeeCCc---cCc------CC---
Q psy15667         79 ACVAENRAGTCE-----IT------P-------------------Y---DSGPYLIAWFKDGR---QIP------GR---  113 (286)
Q Consensus        79 ~C~a~n~~g~~~-----~~------~-------------------~---~~~~~~~~W~~~g~---~l~------~~---  113 (286)
                      +|.|.|..|...     +.      +                   .   ..+.+.+.|++++.   +..      .+   
T Consensus        78 ~C~a~n~~g~~~s~~~~l~v~~~~~p~~~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  157 (395)
T 1bih_A           78 QCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA  157 (395)
T ss_dssp             EEEEEETTEEEECCCEEEEEEEEECCCCEEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE
T ss_pred             EEEEEeCCCeEEeEEEEEEEEEeecCCcCCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE
Confidence            999999877532     10      0                   0   11346899999862   211      11   


Q ss_pred             CCcceEEEccCCCCCCe---eEEEEEEcCCcceeeeee--EEEEcCC----------CceecCCceEEecCCCEEEEeeE
Q psy15667        114 TSSTSLVINPVGREDRG---IYQCIARRSDGDVAQGSA--ELQLGGL----------PYVRLIPKVTAIDGEGLSIKCPV  178 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G---~Y~C~a~~~~g~~~~~~~--~l~v~~~----------~~~~~~~~~~~~~g~~~~l~c~~  178 (286)
                      ...+.|.|.++..+|+|   .|+|.+.|..+.......  .+.+...          |.+ ......+..|+.+.|.|.+
T Consensus       158 ~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~  236 (395)
T 1bih_A          158 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMY  236 (395)
T ss_dssp             CTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEE
T ss_pred             cCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEe
Confidence            12457999999999999   999999998876422211  1111111          111 2345678899999999999


Q ss_pred             eeecCCeEEEEEcCCccc----------------ccc----------------------------------------cc-
Q psy15667        179 AGYPIEEVHWEKVPPKIE----------------SFA----------------------------------------FP-  201 (286)
Q Consensus       179 ~~~p~~~v~w~~~~~~~~----------------~~~----------------------------------------~~-  201 (286)
                      .+.|.+.+.|.+....+.                .+.                                        .+ 
T Consensus       237 ~g~p~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~  316 (395)
T 1bih_A          237 GSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPE  316 (395)
T ss_dssp             ECSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCC
T ss_pred             ccCCCCeEEEEECCEEcCCCCceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCC
Confidence            999999999998421110                000                                        00 


Q ss_pred             c-CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        202 F-DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       202 ~-~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      . ..+.+|+.+.|.|.+. |.|.+.+.|+|+|..+... ++.+.     .+.|.|.++..+|+|.|+|.|.|..|....+
T Consensus       317 ~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~-~~~~~-----~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~  389 (395)
T 1bih_A          317 KVIVVKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG-RATVT-----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFE  389 (395)
T ss_dssp             SEEEECTTSCEEEECEEE-EESCCCCEEEETTEECCSS-SEEEE-----TTEEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             cceEecCCCeEEEEEEEC-cccCCeeEEEECCEECCCC-ceEEE-----CCEEEEeeCCcccCEEEEEEEEccCCCceEE
Confidence            1 2467899999999986 7888999999999988654 33332     2389999999999999999999999999999


Q ss_pred             EEEEEC
Q psy15667        281 SKLQVK  286 (286)
Q Consensus       281 ~~L~V~  286 (286)
                      +.|.|.
T Consensus       390 ~~l~V~  395 (395)
T 1bih_A          390 TLVQVN  395 (395)
T ss_dssp             EEEEEC
T ss_pred             EEEEEC
Confidence            999873

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.1e-33  Score=236.31  Aligned_cols=243  Identities=24%  Similarity=0.378  Sum_probs=171.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEee-CCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTL-DGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +||.|...+.++.+.+|+.++|.|.+.+.| .+.+.|++ ||..+.. ..++.+..    .+.....|.|.+++.+|+|.
T Consensus         1 r~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~D~G~   76 (291)
T 1qz1_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW----NDDDSSTLTIYNANIDDAGI   76 (291)
T ss_dssp             -CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEE----EETTEEEEEECSCCGGGCEE
T ss_pred             CCcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEE----cCCCeEEEEEecCCCCCCEE
Confidence            689999999999999999999999999987 69999999 7877764 34443211    11123469999999999999


Q ss_pred             EEEEEEcCCEEE-----EEec---------------------------CCCCCeeEEEeeCCccCcCC-------CCcce
Q psy15667         78 YACVAENRAGTC-----EITP---------------------------YDSGPYLIAWFKDGRQIPGR-------TSSTS  118 (286)
Q Consensus        78 Y~C~a~n~~g~~-----~~~~---------------------------~~~~~~~~~W~~~g~~l~~~-------~~~~~  118 (286)
                      |+|.|.|..|..     .+..                           ...+++.+.|+++|..+...       .....
T Consensus        77 Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~  156 (291)
T 1qz1_A           77 YKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNY  156 (291)
T ss_dssp             EEEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSSTTCCTTEEECTTSC
T ss_pred             EEEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcccCCCceEEEccCCc
Confidence            999999987421     1110                           01234679999999877431       23467


Q ss_pred             EEEccCCCCCCeeEEEEEEcCCcc-eeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc
Q psy15667        119 LVINPVGREDRGIYQCIARRSDGD-VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES  197 (286)
Q Consensus       119 l~i~~v~~~d~G~Y~C~a~~~~g~-~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~  197 (286)
                      |.|.++..+|+|.|+|.+.|..+. .......+.|..+|.+......                                 
T Consensus       157 L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~---------------------------------  203 (291)
T 1qz1_A          157 LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSI---------------------------------  203 (291)
T ss_dssp             EEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSE---------------------------------
T ss_pred             EEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccc---------------------------------
Confidence            999999999999999999986543 2223445555433332221110                                 


Q ss_pred             cccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC--ceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        198 FAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       198 ~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                         ....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+.....  ..+... .....|.|.++..+|+|.|+|.|.|..|
T Consensus       204 ---~~~~~~~g~~v~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~G  278 (291)
T 1qz1_A          204 ---VNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFS-DDSSELTIRNVDKNDEAEYVCIAENKAG  278 (291)
T ss_dssp             ---EEEETTSCCCEEEEEEEE-EESCCEEEEEETTEECCCC--CCSSEEEC-TTSCEEEECSCCGGGCEEEEEEEEETTE
T ss_pred             ---cccccccCceEEEEEEEE-EeCCCcEEEEECCEECcCCCCCCcceEEc-CCCcEEEEEecChhcCEEEEEEEEeCCC
Confidence               011245666666666654 566778889999988865431  112211 2246899999999999999999999999


Q ss_pred             ceeeEEEEEE
Q psy15667        276 QARYSSKLQV  285 (286)
Q Consensus       276 ~~~~~~~L~V  285 (286)
                      ....++.|.|
T Consensus       279 ~~~~~~~l~V  288 (291)
T 1qz1_A          279 EQDASIHLKV  288 (291)
T ss_dssp             EEEEEEEEEE
T ss_pred             ceEEEEEEEE
Confidence            9999999987

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=100.00  E-value=2.8e-33  Score=236.64  Aligned_cols=254  Identities=21%  Similarity=0.299  Sum_probs=175.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|. .+.+..+.+|++++|.|.+.+. |.+.+.|++||..+..+.++.+.     .+.  ..|.|.+++.+|+|.|+
T Consensus         6 ~~P~~~-~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~-----~~~--~~L~i~~~~~~d~G~Y~   77 (317)
T 2y25_A            6 TGPHFV-EYLSWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDFK-----DGI--CTLLITEFSKKDAGIYE   77 (317)
T ss_dssp             SCCEEE-EEEEEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCSCC----------CC--EEEEETTCCSTTCSCEE
T ss_pred             CCCcEe-eeeeEEECCCCeEEEEEEEcCCCCCCEEEEEECCeEcCCCCcEEEE-----CCe--EEEEEccCCcccCeEEE
Confidence            378888 4557899999999999999987 88999999999999876665432     122  35999999999999999


Q ss_pred             EEEEcCCEEEEEe-------------------------------cCC----------CCCeeEEEeeCCccCcCCC----
Q psy15667         80 CVAENRAGTCEIT-------------------------------PYD----------SGPYLIAWFKDGRQIPGRT----  114 (286)
Q Consensus        80 C~a~n~~g~~~~~-------------------------------~~~----------~~~~~~~W~~~g~~l~~~~----  114 (286)
                      |.|.|..|.....                               ...          .+++.+.|++||..+....    
T Consensus        78 C~~~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~~~~~~~~~~~  157 (317)
T 2y25_A           78 VILKDDRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKT  157 (317)
T ss_dssp             EEEESSSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSSBCCCCSSEEE
T ss_pred             EEEECCCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCEECCCCCCeEE
Confidence            9999988764321                               001          2457899999999886422    


Q ss_pred             ----CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc--eec--CCceEEecCCCEEEEeeEeeecCCeE
Q psy15667        115 ----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY--VRL--IPKVTAIDGEGLSIKCPVAGYPIEEV  186 (286)
Q Consensus       115 ----~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~--~~~--~~~~~~~~g~~~~l~c~~~~~p~~~v  186 (286)
                          ....|.|.++..+|+|.|+|.+.|..|.. .....+.+.....  ...  ........            .+.|.+
T Consensus       158 ~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~v~~~~~~~~~~~~~~~~~~~~------------~~~p~~  224 (317)
T 2y25_A          158 GVTGEQIWLQINEPTPNDKGKYVMELFDGKTGH-QKTVDLSGQAYDEAYAEFQRLKQAAIAE------------KNRARV  224 (317)
T ss_dssp             EECSSEEEEEEESCCGGGCEEEEEEEECSSCEE-EEEEEECHHHHHHHHHHHHHHHHHHHHT------------TTSCEE
T ss_pred             eccCCEEEEEECcCCcccCeeEEEEEEeCCceE-EEEEEEeeeeccccchhhcccCCcccCc------------CCCCcc
Confidence                12349999999999999999999988764 3344444321000  000  00000000            000000


Q ss_pred             EEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEE
Q psy15667        187 HWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY  266 (286)
Q Consensus       187 ~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  266 (286)
                      .  ...+       ....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+.........|.|.++..+|+|.|
T Consensus       225 ~--~~~~-------~~~~v~~g~~~~l~C~~~-g~p~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y  294 (317)
T 2y25_A          225 L--GGLP-------DVVTIQEGKALNLTCNVW-GDPPPEVSWLKNEKALASDDHCNLKFEAGRTAYFTINGVSTADSGKY  294 (317)
T ss_dssp             E--EBCC-------SEEEEETTSBBCEEEEEE-CSSCCEEEEEESSSEECCCSSEEECCBTTTEEEEEEBSCCSTTCEEE
T ss_pred             c--ccCC-------ccEEEEcCCEEEEEEEEe-cCCCCEEEEEECCEeCCCCCcEEEEEcCCCEEEEEECCCCHHHCEEE
Confidence            0  0000       011245677777777764 67888899999999887766655544333346899999999999999


Q ss_pred             EEEEEecccceeeEEEEEE
Q psy15667        267 TCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       267 ~C~a~N~~g~~~~~~~L~V  285 (286)
                      +|.|.|..|....++.|.|
T Consensus       295 ~C~a~N~~g~~~~~~~l~V  313 (317)
T 2y25_A          295 GLVVKNKYGSETSDFTVSV  313 (317)
T ss_dssp             EEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEeCCCeEEEEEEEEE
Confidence            9999999999999999987

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=2e-33  Score=236.65  Aligned_cols=236  Identities=25%  Similarity=0.444  Sum_probs=162.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccccc-CCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV-EDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.|.+.|+++|..+... ++.+..  ..++ ....|.|.+++. +|+|.|+
T Consensus         5 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~i~~~-~~~~~~--~~~~-~~~~L~i~~~~~~~D~G~Y~   80 (304)
T 2yd9_A            5 EPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQ-RFETIE--FDES-AGAVLRIQPLRTPRDENVYE   80 (304)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-------CT-TEEEEE--ETTT-TEEEEEECSCCTTTTCSEEE
T ss_pred             cCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEECCCC-ceEEEE--ecCC-CceEEEEecccccCCCeEEE
Confidence            4899999999999999999999999999999999999999988654 332211  1122 124599999998 9999999


Q ss_pred             EEEEcCCEEEE------Ee---------c-----------------------CCCCCeeEEEeeCCccCcCC--------
Q psy15667         80 CVAENRAGTCE------IT---------P-----------------------YDSGPYLIAWFKDGRQIPGR--------  113 (286)
Q Consensus        80 C~a~n~~g~~~------~~---------~-----------------------~~~~~~~~~W~~~g~~l~~~--------  113 (286)
                      |.|.|..|...      +.         +                       .+.+++.+.|+|+|..+...        
T Consensus        81 C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~  160 (304)
T 2yd9_A           81 CVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ  160 (304)
T ss_dssp             EEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE
T ss_pred             EEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe
Confidence            99999877521      10         0                       01234579999999887431        


Q ss_pred             CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC---CceecCCceEEecCCCEEEEeeEeeecCCeEEEEE
Q psy15667        114 TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL---PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEK  190 (286)
Q Consensus       114 ~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~  190 (286)
                      .....|.|.++..+|+|.|+|.+.|..|......+.|.|...   |.+...+                            
T Consensus       161 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~----------------------------  212 (304)
T 2yd9_A          161 LRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILP----------------------------  212 (304)
T ss_dssp             CTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECC----------------------------
T ss_pred             CCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecC----------------------------
Confidence            234589999999999999999999988865433345554311   1111110                            


Q ss_pred             cCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEE
Q psy15667        191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       191 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                                ....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+.......     .....|.|.++  +|+|.|+|.|
T Consensus       213 ----------~~~~v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~-----~~~~~L~i~~~--~d~G~Y~C~a  274 (304)
T 2yd9_A          213 ----------MSHEIMPGGNVNITCVAV-GSPMPYVKWMQGAEDLTPEDDMP-----VGRNVLELTDV--KDSANYTCVA  274 (304)
T ss_dssp             ----------CCBCCCTTCCEEEEEEEE-EESCCEEEEEETTEECSCSSSCC-----BSEEEEEECSC--CSCEEEEEEE
T ss_pred             ----------CceEEcCCCeEEEEEEEe-eeCCCEEEEEECCEECCCccccc-----CCcEEEEEccc--ccCEEEEEEE
Confidence                      112356777777777764 66778899999999886543321     12345666655  6999999999


Q ss_pred             EecccceeeEEEEEEC
Q psy15667        271 SNTAAQARYSSKLQVK  286 (286)
Q Consensus       271 ~N~~g~~~~~~~L~V~  286 (286)
                      .|..|....++.|.|+
T Consensus       275 ~N~~G~~~~~~~l~V~  290 (304)
T 2yd9_A          275 MSSLGVIEAVAQITVK  290 (304)
T ss_dssp             EETTEEEEEEEEEC--
T ss_pred             EeCCCcEEEEEEEEEe
Confidence            9999999999999874

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=100.00  E-value=3.8e-34  Score=249.81  Aligned_cols=278  Identities=22%  Similarity=0.349  Sum_probs=196.0

Q ss_pred             CCeeEe-ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTY-SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~-~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|.. .+.++.+.+|++++|.|.+.|+|.+.+.|+|||..+...  .++...   ...+.....+.+.+++.+|+|.|
T Consensus        16 ~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g~~l~~~~~~~~~~~---~~~~~l~i~~~~~~~~~~D~G~Y   92 (404)
T 3p3y_A           16 PPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNSRFFNIAKDPRVSMR---RRSGTLVIDFRSGGRPEEYEGEY   92 (404)
T ss_dssp             CCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETTEECCGGGCSSCBCC---SSSCCCBCCCTTTCCTTSSCEEE
T ss_pred             CCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECCEEeeeecCCcceEe---cCCceEEEEeccCCCCccCCEEE
Confidence            777775 467779999999999999999999999999999987532  232211   11222111122248899999999


Q ss_pred             EEEEEcCCEEEE-----Eec-----------------------------CCCCCeeEEEeeCCccCc-CC-----CCcce
Q psy15667         79 ACVAENRAGTCE-----ITP-----------------------------YDSGPYLIAWFKDGRQIP-GR-----TSSTS  118 (286)
Q Consensus        79 ~C~a~n~~g~~~-----~~~-----------------------------~~~~~~~~~W~~~g~~l~-~~-----~~~~~  118 (286)
                      +|.|.|..|...     +..                             ...+.+.+.|++++.... ..     ...+.
T Consensus        93 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~  172 (404)
T 3p3y_A           93 QCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQGHNGD  172 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEECTTSC
T ss_pred             EEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEcCCCc
Confidence            999999877542     110                             011345799999875432 21     13467


Q ss_pred             EEEccCCCCC-CeeEEEEEEcCCcceeee--eeEEEEcCC-------CceecC----CceEEecCCCEEEEeeEeeecCC
Q psy15667        119 LVINPVGRED-RGIYQCIARRSDGDVAQG--SAELQLGGL-------PYVRLI----PKVTAIDGEGLSIKCPVAGYPIE  184 (286)
Q Consensus       119 l~i~~v~~~d-~G~Y~C~a~~~~g~~~~~--~~~l~v~~~-------~~~~~~----~~~~~~~g~~~~l~c~~~~~p~~  184 (286)
                      |.|.++..+| +|.|+|.+.|..+.....  ...+.+...       |.+...    ....+..|+.+.|.|.+.+.|.+
T Consensus       173 l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~  252 (404)
T 3p3y_A          173 LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTP  252 (404)
T ss_dssp             EEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCC
T ss_pred             EEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCC
Confidence            9999999999 599999999987754222  244444321       211111    12457789999999999999999


Q ss_pred             eEEEEEcCCcccc--------------------------c-------------------------ccccCCCCCCCeEEE
Q psy15667        185 EVHWEKVPPKIES--------------------------F-------------------------AFPFDGLPEGARTRV  213 (286)
Q Consensus       185 ~v~w~~~~~~~~~--------------------------~-------------------------~~~~~~~~~g~~~~l  213 (286)
                      .+.|.+....+..                          +                         ......+.+|+.+.|
T Consensus       253 ~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l  332 (404)
T 3p3y_A          253 DIAWYKKGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRL  332 (404)
T ss_dssp             EEEEEETTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEE
T ss_pred             cEEEEECCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEE
Confidence            9999984322110                          0                         000233678999999


Q ss_pred             EEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        214 ICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       214 ~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.+. |.|.+.+.|+|+|..+.... .......   +..|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       333 ~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  402 (404)
T 3p3y_A          333 VCRAN-GNPKPTVQWMVNGEPLQSAPPNPNREVA---GDTIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVL  402 (404)
T ss_dssp             ECEEE-EESCCEEEEEETTEEGGGSCCCTTEEEE---TTEEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEcc-ccCCCceEEEECCEecCCCCCCceEEec---CCEEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            99885 68889999999999886443 1122211   3479999999999999999999999999999999873

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=100.00  E-value=6.5e-33  Score=231.71  Aligned_cols=239  Identities=23%  Similarity=0.405  Sum_probs=174.6

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .+|.|...+.++.+.+|+.++|.|.+.|.|. .+.|++ +|..+..+.++.+..    .+ ....|.|.+++.+|+|.|+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~----~~-~~~~L~i~~~~~~D~G~Y~   76 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQK----EG-VRSRLTIYNANIEDAGIYR   76 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEE----ET-TEEEEEECSCCGGGCEEEE
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEec----CC-CEEEEEEccCCcccCEEEE
Confidence            4799999999999999999999999999885 899999 777777666665421    22 2346999999999999999


Q ss_pred             EEEEcCCEEEE-----Ee----c-----------------------CCCCCeeEEEeeCCccCcCC-------CCcceEE
Q psy15667         80 CVAENRAGTCE-----IT----P-----------------------YDSGPYLIAWFKDGRQIPGR-------TSSTSLV  120 (286)
Q Consensus        80 C~a~n~~g~~~-----~~----~-----------------------~~~~~~~~~W~~~g~~l~~~-------~~~~~l~  120 (286)
                      |.|.|..|...     +.    +                       ...+++.+.|++++..+...       .....|.
T Consensus        77 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~L~  156 (291)
T 2wim_A           77 CQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQ  156 (291)
T ss_dssp             EEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEECTTSCEE
T ss_pred             EEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEccCCCEE
Confidence            99999876321     11    0                       01234579999999876431       1346799


Q ss_pred             EccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccc
Q psy15667        121 INPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA  199 (286)
Q Consensus       121 i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~  199 (286)
                      |.++..+|+|.|+|.+.|..+.. ......+.+..+|.+...+..                                   
T Consensus       157 i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~-----------------------------------  201 (291)
T 2wim_A          157 ILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKS-----------------------------------  201 (291)
T ss_dssp             ETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSE-----------------------------------
T ss_pred             EEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCccc-----------------------------------
Confidence            99999999999999999876442 223344555443332211110                                   


Q ss_pred             cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       200 ~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                       ....+.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+.   .....|.|.++..+|+|.|+|.|.|..|....
T Consensus       202 -~~~~~~~g~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~---~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~  276 (291)
T 2wim_A          202 -FNATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEENEKYILK---GSNTELTVRNIINSDGGPYVCRATNKAGEDEK  276 (291)
T ss_dssp             -EECCSSSCCEEEEECBCC-CBSCCEEEEEETTEECCCTTTEEEC---STTCEEEEESCCSTTCEEEEEEEEETTEEEEE
T ss_pred             -ccceecCCCeEEEEEEee-cCCCCeEEEEECCEECcCCccEEEc---CCccEEEEeeCCcccCEEEEEEEEECCCceee
Confidence             012356788888888874 6788899999999998766554432   22468999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15667        280 SSKLQV  285 (286)
Q Consensus       280 ~~~L~V  285 (286)
                      ++.|.|
T Consensus       277 ~~~l~v  282 (291)
T 2wim_A          277 QAFLQV  282 (291)
T ss_dssp             EEEEEC
T ss_pred             eEEEEE
Confidence            999986

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=100.00  E-value=5e-33  Score=263.66  Aligned_cols=279  Identities=30%  Similarity=0.579  Sum_probs=211.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|+.+.|.|.+.|+|.|.+.|+++|..+..+.++...+....+++....|.|.++..+|+|.|+|.
T Consensus       429 ~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~  508 (816)
T 3dmk_A          429 PPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDGKKIANNDRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCI  508 (816)
T ss_dssp             CCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETTEECCSCTTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEE
T ss_pred             CCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECCEECCCCCCcccccEEecCCCcEEEEEEeeccccCCEEEEEE
Confidence            78888888888999999999999999999999999999999987777765554444555556799999999999999999


Q ss_pred             EEcCCEEEEEe----c--------------------------CCCCCeeEEEeeCCccCcCCC-----CcceEEEccCC-
Q psy15667         82 AENRAGTCEIT----P--------------------------YDSGPYLIAWFKDGRQIPGRT-----SSTSLVINPVG-  125 (286)
Q Consensus        82 a~n~~g~~~~~----~--------------------------~~~~~~~~~W~~~g~~l~~~~-----~~~~l~i~~v~-  125 (286)
                      |.|..|.....    .                          ...+++.+.|+|||..+....     ..+.|.|.++. 
T Consensus       509 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~~l~i~~v~~  588 (816)
T 3dmk_A          509 AKSKVGVAEHSAKLNVYGLPYIRQMEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVER  588 (816)
T ss_dssp             EEETTEEEEEEEEEEECSSCEECCCCCEEEETTCCEEEECCEECSSEEEEEEEETTEESCCSTTEEECTTSEEEESSCCH
T ss_pred             EEECCCeEEEEEEEEEecCCeeEccCCeEEecCCeEEEEEEecCCCCCEEEEEECCeEcccCCceEEecCCeEEEEecCc
Confidence            99998864321    0                          012345799999999886432     35689999998 


Q ss_pred             CCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC--CceEEecCCCEEEEeeEeeecCC-eEEEEEcCCcccc-----
Q psy15667        126 REDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI--PKVTAIDGEGLSIKCPVAGYPIE-EVHWEKVPPKIES-----  197 (286)
Q Consensus       126 ~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~p~~-~v~w~~~~~~~~~-----  197 (286)
                      .+|+|.|+|.|.|..|........+.+...|.+...  ....+..|+.++|.|.+.+.|.+ .+.|.+....+..     
T Consensus       589 ~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~W~~~g~~l~~~~~~~  668 (816)
T 3dmk_A          589 NSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNIDWTLDGQAISEDLGIT  668 (816)
T ss_dssp             HHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEEEEETTBCCCGGGTCE
T ss_pred             cccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEEEEECCeEcCCCCCee
Confidence            599999999999998865555667777666554322  34557789999999999876654 8999985422210     


Q ss_pred             -------------------------c-------------------------ccccCCCCCCCeEEEEEeeecCCCCCeEE
Q psy15667        198 -------------------------F-------------------------AFPFDGLPEGARTRVICGVTHGDPPLTIR  227 (286)
Q Consensus       198 -------------------------~-------------------------~~~~~~~~~g~~~~l~c~~~~~~p~~~~~  227 (286)
                                               +                         ......+.+|+.+.|.|.+. |.|.|.+.
T Consensus       669 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~-g~P~p~i~  747 (816)
T 3dmk_A          669 TSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKAD-GFPKPQVT  747 (816)
T ss_dssp             EEEETTTEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEE-EESCCEEE
T ss_pred             EEEcCCCeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEe-cCCCCeEE
Confidence                                     0                         00012355799999999985 78889999


Q ss_pred             EEeCCeeCCCCCC-----ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        228 WLKDGKPLSPRFP-----VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       228 W~~~g~~~~~~~~-----~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      |+|++..+.....     ..+..   .++.|.|.++..+|+|.|+|.|.|.+|.+..++.+.
T Consensus       748 W~k~~~~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~v~~~  806 (816)
T 3dmk_A          748 WKKAVGDTPGEYKDLKKSDNIRV---EEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMI  806 (816)
T ss_dssp             CCEECSSSTTCCBCCCCBTTEEE---ETTEEEECSCCGGGCEEEEEEEECSSSSCEEEEEEE
T ss_pred             EEecCCCCCccccccccCCCEEe---cCCEEEECcCChhhCeEEEEEEEeCCCCCcEEEEEE
Confidence            9998865532211     00111   134799999999999999999999999999888765

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=1.4e-32  Score=254.10  Aligned_cols=263  Identities=20%  Similarity=0.309  Sum_probs=199.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |+.+.+.+.+..+.+|+.++|.|.+.|+|.|.+.|++||..+..+.                .|.|.+++.+|+|.|+|.
T Consensus       203 p~~~~~~~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~~g~~i~~~~----------------~L~i~~~~~~d~G~Y~C~  266 (642)
T 1e07_A          203 PDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFVNGTFQQSTQ----------------ELFIPNITVNNSGSYTCQ  266 (642)
T ss_pred             CCCcEEecCCcccccCCEEEEEEEcCCCCCcEEEEEECCeEcccCC----------------ceEEecccccCCeEEEEE
Confidence            4445566677789999999999999999999999999998874321                378999999999999999


Q ss_pred             EEcCCEEEE------Eec----------------------------CCCCCeeEEEeeCCccCcCC------CCcceEEE
Q psy15667         82 AENRAGTCE------ITP----------------------------YDSGPYLIAWFKDGRQIPGR------TSSTSLVI  121 (286)
Q Consensus        82 a~n~~g~~~------~~~----------------------------~~~~~~~~~W~~~g~~l~~~------~~~~~l~i  121 (286)
                      |.|..|...      +..                            ....++.+.|++||+.+...      .....|.|
T Consensus       267 a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~~~~g~~v~l~C~~~~~p~~v~W~~~g~~l~~~~~~~~~~~~~~L~i  346 (642)
T 1e07_A          267 AHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTL  346 (642)
T ss_pred             EEeCCCceEEeeeEEEEEEccCCCCEEEcCCceeEecCCcEEEEEECCCCCccEEEEECCccCCCcCCEEEeCCCCEEEE
Confidence            999776321      100                            00124578999999987542      12467999


Q ss_pred             ccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee--cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc--
Q psy15667        122 NPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR--LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES--  197 (286)
Q Consensus       122 ~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~--~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~--  197 (286)
                      .++..+|+|.|+|.|.|..|...+..+.|.|...|...  ......+..|+.+.|.|.+.|.|.+.+.|.+....+..  
T Consensus       347 ~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~~~  426 (642)
T 1e07_A          347 LSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQ  426 (642)
T ss_pred             eccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCCCc
Confidence            99999999999999999988754556778886555322  22345677899999999999999999999983211100  


Q ss_pred             ---------------------------------c------c------cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC
Q psy15667        198 ---------------------------------F------A------FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG  232 (286)
Q Consensus       198 ---------------------------------~------~------~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g  232 (286)
                                                       .      .      .+...+.+|+.+.|.|.+.  .|.+.+.|+|+|
T Consensus       427 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~--~~~~~i~W~~~g  504 (642)
T 1e07_A          427 ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPE--AQNTTYLWWVNG  504 (642)
T ss_pred             eEEEccCChhhCeEEEEEEEcCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECC--CCCcEEEEEECC
Confidence                                             0      0      0012356899999999987  478999999999


Q ss_pred             eeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee-EEEEEE
Q psy15667        233 KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY-SSKLQV  285 (286)
Q Consensus       233 ~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~-~~~L~V  285 (286)
                      ..+....++.+..   .+..|.|.++..+|+|.|+|.|.|..|.... ++.|.|
T Consensus       505 ~~l~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V  555 (642)
T 1e07_A          505 QSLPVSPRLQLSN---GNRTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDV  555 (642)
T ss_pred             EeCCCCCcEEEcC---CCcEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEE
Confidence            9987766555432   2458999999999999999999999997544 567766

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=100.00  E-value=9.2e-33  Score=249.43  Aligned_cols=266  Identities=15%  Similarity=0.139  Sum_probs=188.0

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      ......+.+|++++|.|.+.+.|...+.|++++..|.....+...     + ....+|.|.+++.+|+|.|+|.|.|..+
T Consensus        54 ~~~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~l~~~~~~~~~-----~-r~~~SL~I~~v~~~D~G~Y~C~~~n~~~  127 (527)
T 3qs9_E           54 EAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQ-----N-RGVVSMVILKMTETQAGEYLLFIQSEAT  127 (527)
T ss_dssp             --CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEECCCCBC-----------CEEEEEESSCCSSSCSEEEEEEEC--C
T ss_pred             eeeeEEEeccccEEEEEEEecCCceeEEEEecCCccCcccccCCC-----c-ceEEEEEECcCChhhCeeEEEEEEeccc
Confidence            344688999999999999999888999999999987654444211     1 1224599999999999999999999877


Q ss_pred             EEEE------e------------------------cCCCCCeeEEEeeCCccCcCC--CCcc--eEEEccCCCCCCeeEE
Q psy15667         88 TCEI------T------------------------PYDSGPYLIAWFKDGRQIPGR--TSST--SLVINPVGREDRGIYQ  133 (286)
Q Consensus        88 ~~~~------~------------------------~~~~~~~~~~W~~~g~~l~~~--~~~~--~l~i~~v~~~d~G~Y~  133 (286)
                      ....      .                        ..+.+++.+.|++++..+...  ....  ......+..+|+|.|+
T Consensus       128 ~~~~~~~v~v~~~~~~~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~G~Y~  207 (527)
T 3qs9_E          128 NYTILFTVSIRNTLLYTLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIR  207 (527)
T ss_dssp             EEEEEEEEEEC-----CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEE
T ss_pred             cEEEEEEEEECCceeeccCCCcEEecCCceEEEEEEceecCCeEEEEECCCCCccccccCCcEEEEeeeeccccCCEEEE
Confidence            5431      1                        011245789999988765321  1111  1223345689999999


Q ss_pred             EEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEe-eecCCeEEEEEcCCcccc---------------
Q psy15667        134 CIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVA-GYPIEEVHWEKVPPKIES---------------  197 (286)
Q Consensus       134 C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~-~~p~~~v~w~~~~~~~~~---------------  197 (286)
                      |.|.|..|......+.|.|...|.. ......+.+|+.+.|.|.+. +.|.+.+.|.+....+..               
T Consensus       208 C~A~N~~G~~~~~~~~l~V~~~p~~-~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~  286 (527)
T 3qs9_E          208 CCARNELGRECTRLFTIDLNQTPQT-TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTM  286 (527)
T ss_dssp             EEEECSSCEEEEECEEEESSSCCCC-SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEE
T ss_pred             EEEEeCCCcccceEEEEEEeccCcc-CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcce
Confidence            9999999876544477777666554 33456778999999999997 899999999985432100               


Q ss_pred             -----c---------------c---------------------c---ccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe
Q psy15667        198 -----F---------------A---------------------F---PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  233 (286)
Q Consensus       198 -----~---------------~---------------------~---~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~  233 (286)
                           +               .                     .   ....+.+|+.+.|.|.+. |.|.|.+.|+|+|.
T Consensus       287 ~~~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~-g~P~p~i~W~k~g~  365 (527)
T 3qs9_E          287 IRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK-AYPQIRCTWTFSRK  365 (527)
T ss_dssp             EEEEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEE-EESCCEEEEEETTE
T ss_pred             eeEEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEE-ecCCCEEEEEECCE
Confidence                 0               0                     0   012467799999999885 67889999999999


Q ss_pred             eCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .+....+..     .....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       366 ~l~~~~~~~-----~~~~~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~  413 (527)
T 3qs9_E          366 SFPCEQKGL-----DNGYSISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIR  413 (527)
T ss_dssp             EEECBCCBC-----SSSSEEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--
T ss_pred             ECcCCcccc-----cCCcEEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEe
Confidence            886543321     124578999999999999999999999999999888774

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=100.00  E-value=7.8e-32  Score=249.16  Aligned_cols=251  Identities=19%  Similarity=0.359  Sum_probs=190.0

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE-
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC-   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~-   89 (286)
                      ...+..|+++.|.|.+.+.| +.+.|++||..|..+.++.+..    .+   ..|.|.++..+|+|.|+|.|.|..|.. 
T Consensus       298 ~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~l~~~~~~~~~~----~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  369 (642)
T 1e07_A          298 SNPVEDEDAVALTCEPEIQN-TTYLWWVNNQSLPVSPRLQLSN----DN---RTLTLLSVTRNDVGPYECGIQNELSVDH  369 (642)
T ss_pred             ceeEecCCcEEEEEECCCCC-ccEEEEECCccCCCcCCEEEeC----CC---CEEEEeccCcccCeeEEEEEeCCCCCcc
Confidence            34566788899999999987 7899999999998776665421    11   258999999999999999999987631 


Q ss_pred             ----EEe----c------------------------CCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEE
Q psy15667         90 ----EIT----P------------------------YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIAR  137 (286)
Q Consensus        90 ----~~~----~------------------------~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~  137 (286)
                          .+.    |                        .+.+++.+.|++||..+..   ...|.|.++..+|+|.|+|.|.
T Consensus       370 s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~~~~---~~~L~i~~~~~~d~G~Y~C~a~  446 (642)
T 1e07_A          370 SDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQH---TQELFISNITEKNSGLYTCQAN  446 (642)
T ss_pred             eeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeEEEEECCEEcCC---CceEEEccCChhhCeEEEEEEE
Confidence                111    0                        1123468999999988753   3579999999999999999999


Q ss_pred             cCCcceee-eeeEEEEcC---CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccc----------------
Q psy15667        138 RSDGDVAQ-GSAELQLGG---LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIES----------------  197 (286)
Q Consensus       138 ~~~g~~~~-~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~----------------  197 (286)
                      |..|.... ....+.+..   +|.+...+...+..|+.+.|.|.+.+ |.+.+.|.+....+..                
T Consensus       447 n~~g~~~~s~~~~v~v~~~~~~p~i~~~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~g~~l~~~~~~~~~~~~~~L~i~  525 (642)
T 1e07_A          447 NSASGHSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEA-QNTTYLWWVNGQSLPVSPRLQLSNGNRTLTLF  525 (642)
T ss_pred             cCCCCCcccceEEEEEeccCCCceEecCCceeecCCCeEEEEEECCC-CCcEEEEEECCEeCCCCCcEEEcCCCcEEEEe
Confidence            99876532 124455543   34454445566779999999999994 7889999873211100                


Q ss_pred             -----------c---------------------------ccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        198 -----------F---------------------------AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       198 -----------~---------------------------~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                                 +                           ......+.+|+.+.|.|.+. |.|++.+.|+|+|..+..  
T Consensus       526 ~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~v~W~~~g~~i~~--  602 (642)
T 1e07_A          526 NVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSA-SNPSPQYSWRINGIPQQH--  602 (642)
T ss_pred             ecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEec-cCCCCeEEEEECCEECcc--
Confidence                       0                           00012346799999999985 788899999999997753  


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                                ...|.|.++..+|+|.|+|.|.|.+|....++.|.|+
T Consensus       603 ----------~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~s~~l~V~  639 (642)
T 1e07_A          603 ----------TQVLFIAKITPNNNGTYACFVSNLATGRNNSIVKSIT  639 (642)
T ss_pred             ----------CceEEECcccccCCeEEEEEEEecccCcceeEEEEEE
Confidence                      2468999999999999999999999999999988874

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=100.00  E-value=1.3e-32  Score=226.32  Aligned_cols=214  Identities=18%  Similarity=0.281  Sum_probs=159.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.|...+.++.+.+|+.++|.|.+.+.|.+ .+.|+++|..+.....               .|.|.+++.+|+|.|+|.
T Consensus         2 P~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g~~~~~~~~---------------~l~i~~~~~~d~G~Y~C~   66 (262)
T 3rjd_A            2 AVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNGTATQTSTP---------------SYRITSASVNDSGEYRCQ   66 (262)
T ss_dssp             CEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETTEECSCCSS---------------EEEESSCCGGGCEEEEEE
T ss_pred             CeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECCEEeeccCC---------------eEEEecCCcccCeEEEEE
Confidence            889999999999999999999999999988 9999999998864311               378999999999999999


Q ss_pred             EEcCCEEE--EE--------------------------ec-CCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeE
Q psy15667         82 AENRAGTC--EI--------------------------TP-YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIY  132 (286)
Q Consensus        82 a~n~~g~~--~~--------------------------~~-~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y  132 (286)
                      |.|..+..  .+                          .. ...+++.+.|+++|..+........|.|.++..+|+|.|
T Consensus        67 ~~~~~~s~~~~l~v~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~~~~~~l~i~~~~~~d~G~Y  146 (262)
T 3rjd_A           67 RGLSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFFHWNSNLTILKTNISHNGTY  146 (262)
T ss_dssp             ESSSCCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGCEEE
T ss_pred             EecCCccccEEEEEeccceEecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCccccccCCCCeEEEEECChhhCEEE
Confidence            98865531  11                          01 112346899999999886554457899999999999999


Q ss_pred             EEEEEcCCcceeeeeeEEEEcC---CCceecCCceEEecCCCEEEEeeEeeecC-CeEEEEEcCCcccccccccCCCCCC
Q psy15667        133 QCIARRSDGDVAQGSAELQLGG---LPYVRLIPKVTAIDGEGLSIKCPVAGYPI-EEVHWEKVPPKIESFAFPFDGLPEG  208 (286)
Q Consensus       133 ~C~a~~~~g~~~~~~~~l~v~~---~~~~~~~~~~~~~~g~~~~l~c~~~~~p~-~~v~w~~~~~~~~~~~~~~~~~~~g  208 (286)
                      +|.+.|..+.. ...+.|.|..   .|.+...+...+..|+.+.|.|.+.+.|. |.+.|                    
T Consensus       147 ~C~~~n~~~~~-~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~--------------------  205 (262)
T 3rjd_A          147 HCSGMGKHRYT-SAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQL--------------------  205 (262)
T ss_dssp             EEEEESSSEEE-EECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----E--------------------
T ss_pred             EEEEeCCCCcc-ccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccE--------------------
Confidence            99999987643 3456777753   23333333334555666666666655543 33322                    


Q ss_pred             CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                                      .+.|++++..+...         .....|.|.++..+|+|.|+|.|.|..|..
T Consensus       206 ----------------~~~w~~~~~~~~~~---------~~~~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          206 ----------------YFSFYMGSKTLRGR---------NTSSEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             ----------------EEEEEETTEEEEEE---------ESCCEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             ----------------EEEEEeCCcEeccc---------CCCceEEEEEechhhCeEEEEEEEcccCce
Confidence                            36799999876421         124579999999999999999999999965

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=7.9e-32  Score=243.43  Aligned_cols=268  Identities=15%  Similarity=0.302  Sum_probs=196.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.+    .+.|++++..+.    .      ....   ..|.|.+++.+|+|.|+|
T Consensus        35 ~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~~~----~------~~~~---~~L~I~~~~~~D~G~Y~C   97 (524)
T 2ec8_A           35 SPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDET----N------ENKQ---NEWITEKAEATNTGKYTC   97 (524)
T ss_dssp             CCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSSCC----E------EECS---SEEEESSCCSTTCEEEEE
T ss_pred             CCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcccc----c------cCcc---ceEEEcccchhhCEEEEE
Confidence            3888888888889999999999999987    899999998762    1      0111   258999999999999999


Q ss_pred             EEEcCC-EEEEEecC--------------------------CCCC-eeEEEee-CCccCcCC-----CCcceEEEccCCC
Q psy15667         81 VAENRA-GTCEITPY--------------------------DSGP-YLIAWFK-DGRQIPGR-----TSSTSLVINPVGR  126 (286)
Q Consensus        81 ~a~n~~-g~~~~~~~--------------------------~~~~-~~~~W~~-~g~~l~~~-----~~~~~l~i~~v~~  126 (286)
                      .|.|.. ..+.+...                          ..++ +.+.||+ ||..+...     .....|.|.++..
T Consensus        98 ~a~ng~~~~~~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~~~~  177 (524)
T 2ec8_A           98 TNKHGLSNSIYVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKR  177 (524)
T ss_dssp             EETTSCEEEEEEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEETTTEEEEESCCG
T ss_pred             eecCCcceEEEEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeECCCccEEEeccch
Confidence            998821 11222100                          0122 6899998 88877542     1346899999999


Q ss_pred             CCCe-eEEEEEEcCCcceeeeeeEEEEc----CCCceecCC-ceEEecCCCEEEEeeEeeecCCe-EEEEEcCCcc--c-
Q psy15667        127 EDRG-IYQCIARRSDGDVAQGSAELQLG----GLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEE-VHWEKVPPKI--E-  196 (286)
Q Consensus       127 ~d~G-~Y~C~a~~~~g~~~~~~~~l~v~----~~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~-v~w~~~~~~~--~-  196 (286)
                      +|+| .|+|.+.|..+...+..+.|.|.    .+|.+...+ ...+.+|+.+.|.|.+.+.|.|. +.|.+....+  . 
T Consensus       178 ~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~  257 (524)
T 2ec8_A          178 AYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQE  257 (524)
T ss_dssp             GGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCE
T ss_pred             hhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccc
Confidence            9999 99999999877654446777775    445554433 45678999999999999999887 9999855441  0 


Q ss_pred             ----------------c---------------cc------------------------cc----cCCCCCCCeEEEEEee
Q psy15667        197 ----------------S---------------FA------------------------FP----FDGLPEGARTRVICGV  217 (286)
Q Consensus       197 ----------------~---------------~~------------------------~~----~~~~~~g~~~~l~c~~  217 (286)
                                      .               +.                        .+    ...+.+|+.+.|.|.+
T Consensus       258 ~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~  337 (524)
T 2ec8_A          258 KYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEY  337 (524)
T ss_dssp             EEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEE
T ss_pred             ccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEE
Confidence                            0               00                        00    1236789999999997


Q ss_pred             ecCCCCCe-EEEEeCCeeCCCCCCceeeecCC----CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        218 THGDPPLT-IRWLKDGKPLSPRFPVNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       218 ~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                       .|.|.|. +.|+|+|..+.............    ....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       338 -~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  410 (524)
T 2ec8_A          338 -EAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVN  410 (524)
T ss_dssp             -EEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             -eecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEe
Confidence             4778888 99999999886554211111111    24689999999999999999999999999999999874

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.98  E-value=3.1e-30  Score=235.87  Aligned_cols=282  Identities=18%  Similarity=0.246  Sum_probs=194.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCC-------------CCeeEeceEEecccceeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPT-------------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~-------------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ||.|...+..+.+.+|++++|.|.+.+. |.+.+.|+|++..+..             ..|+.+..  .+.......|.|
T Consensus       112 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~~L~I  189 (585)
T 2ocw_A          112 GPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDI--QGTGQLLFSVVI  189 (585)
T ss_pred             CccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEe--ccCCCcEEEEEE
Confidence            6777777888899999999999999965 5678999999764210             23332211  111112236999


Q ss_pred             cccccCCCeEEEEEEEcCCEEEE----Eec---------------------CCCCC---eeEEEe-eCCccCc-------
Q psy15667         68 SHVTVEDGGEYACVAENRAGTCE----ITP---------------------YDSGP---YLIAWF-KDGRQIP-------  111 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~~g~~~----~~~---------------------~~~~~---~~~~W~-~~g~~l~-------  111 (286)
                      .+++.+|+|.|+|.|.|..|...    +..                     ...++   +.+.|+ +||..+.       
T Consensus       190 ~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~~~~~~~~~~~~w~~~~g~~~~~~~~~~~  269 (585)
T 2ocw_A          190 NQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLG  269 (585)
T ss_pred             ccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEcCCCCCCceEEEEEeCCCCCcceEEeCCC
Confidence            99999999999999999877421    110                     01122   578896 8884211       


Q ss_pred             -------CCC------Ccc--eEEEccCCCCCCeeEEEEEEcCCcceee----eeeEEEEcCCCceecC-CceEEecCCC
Q psy15667        112 -------GRT------SST--SLVINPVGREDRGIYQCIARRSDGDVAQ----GSAELQLGGLPYVRLI-PKVTAIDGEG  171 (286)
Q Consensus       112 -------~~~------~~~--~l~i~~v~~~d~G~Y~C~a~~~~g~~~~----~~~~l~v~~~~~~~~~-~~~~~~~g~~  171 (286)
                             .+.      ..+  .|.|.++..+|+|.|+|.|.|. |....    ..+.|.|...|.+... ....+.+|+.
T Consensus       270 ~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~  348 (585)
T 2ocw_A          270 KRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSS  348 (585)
T ss_pred             cCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCccccCceeeEEEEEecccccccCCcceEEEeCCc
Confidence                   110      122  6999999999999999999995 43321    4677888777665443 3466789999


Q ss_pred             EEEEeeEeeecCCeE----EEEE--cCC--c----------------------------cc--c----------ccc---
Q psy15667        172 LSIKCPVAGYPIEEV----HWEK--VPP--K----------------------------IE--S----------FAF---  200 (286)
Q Consensus       172 ~~l~c~~~~~p~~~v----~w~~--~~~--~----------------------------~~--~----------~~~---  200 (286)
                      +.|.|.+.+.|.+.+    .|.+  ...  .                            +.  .          |..   
T Consensus       349 v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~an~~  428 (585)
T 2ocw_A          349 VAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGD  428 (585)
T ss_pred             EEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEeccCCCcEEEEEECCCChhhCEEEEEcccCC
Confidence            999999999999887    7987  221  0                            00  0          000   


Q ss_pred             ---------------------ccCCCCCCCeEEEEEeeec---CCCCCeEEEEeCCeeCCCCCCce----eee--cCCCe
Q psy15667        201 ---------------------PFDGLPEGARTRVICGVTH---GDPPLTIRWLKDGKPLSPRFPVN----VSD--LDSFS  250 (286)
Q Consensus       201 ---------------------~~~~~~~g~~~~l~c~~~~---~~p~~~~~W~~~g~~~~~~~~~~----~~~--~~~~~  250 (286)
                                           ....+.+|+.+.|.|.+..   +.|.+.+.|+|+|..+.......    +..  .....
T Consensus       429 g~~~~~~~l~V~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~  508 (585)
T 2ocw_A          429 TLWRTTVEIKIIEGEPNLKVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRL  508 (585)
T ss_pred             CccceeEEEEEecCccccccCCceeEecCCcEEEEEEecCCCCCCccEEEEEeecCceeeeccCCCCCcceEEecCcccE
Confidence                                 0123567999999998863   67889999999998774432110    111  12234


Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeE-EEEEEC
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVK  286 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~-~~L~V~  286 (286)
                      ..|.|.++..+|+|.|+|.|.|..|..... +.|.|+
T Consensus       509 ~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~~l~V~  545 (585)
T 2ocw_A          509 VSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVE  545 (585)
T ss_pred             EEEEECCCCcccCeEEEEEeEeCCCccEEEEEEEEEE
Confidence            689999999999999999999999866544 778774

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.98  E-value=2.4e-30  Score=233.70  Aligned_cols=272  Identities=21%  Similarity=0.333  Sum_probs=183.0

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EEcC------------CCCeeEeceEEecccceeEEEEEccccc
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FELP------------TNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~l~------------~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ..+.++++.+|++++|.|.+.+.|.+.+.|+|++  ..+.            .+.|+...     .......|.|.+++.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~v~~   79 (523)
T 2rcj_C            5 TQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGS-----KSGTSASLAISGLEA   79 (523)
T ss_pred             ccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEe-----cCCCEEEEEECCCCh
Confidence            3567789999999999999999999999999974  2211            12344311     112223699999999


Q ss_pred             CCCeEEEEEEEcCCEE---------EEEe------c-----------------------CCCCC--eeEEEeeCCccCcC
Q psy15667         73 EDGGEYACVAENRAGT---------CEIT------P-----------------------YDSGP--YLIAWFKDGRQIPG  112 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~---------~~~~------~-----------------------~~~~~--~~~~W~~~g~~l~~  112 (286)
                      +|+|.|+|.|.|..|.         ..+.      |                       .+.+|  ..+.|+|||..+..
T Consensus        80 ~D~G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~  159 (523)
T 2rcj_C           80 EDESDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKA  159 (523)
T ss_pred             hhCEEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCC
Confidence            9999999999986531         1110      0                       01122  38999999988753


Q ss_pred             CC--------C------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE----cCCCcee-cCCceEEecCCCEE
Q psy15667        113 RT--------S------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL----GGLPYVR-LIPKVTAIDGEGLS  173 (286)
Q Consensus       113 ~~--------~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v----~~~~~~~-~~~~~~~~~g~~~~  173 (286)
                      ..        .      ...|.|.++..+|+|.|+|.|.|..+.... ...+.+    ...|.+. ..+...+.+|+.+.
T Consensus       160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~-~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~  238 (523)
T 2rcj_C          160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEK-TVAPTECSASTKGPSVFPLAPSSKSTSGGTAA  238 (523)
T ss_pred             ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCccccc-ceeeeecCCCCcCCEEEecCCCcccccCCceE
Confidence            21        1      135999999999999999999998775422 233221    2234333 22334567899999


Q ss_pred             EEeeEeee-cCC-eEEEEEcCCccc------------------ccc--------------------------------cc
Q psy15667        174 IKCPVAGY-PIE-EVHWEKVPPKIE------------------SFA--------------------------------FP  201 (286)
Q Consensus       174 l~c~~~~~-p~~-~v~w~~~~~~~~------------------~~~--------------------------------~~  201 (286)
                      |.|.+.|. |.| .+.|.+....+.                  .+.                                .+
T Consensus       239 l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~dG~Y~C~a~n~~g~~~~~~~l~v~~~P  318 (523)
T 2rcj_C          239 LGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLP  318 (523)
T ss_pred             EEEEEeceeCCCeEEEEecCCcccceEeCCcEecCCCcEEEEEEEEechhhcCCceEEEEEEeCCCCcceEEecCCCcCc
Confidence            99999986 777 899998432100                  000                                00


Q ss_pred             --------cCC-CCCCCeEEEEEeeecCCCC---CeEEEEeCCeeCCCCCCceeeec-C---CCeeeEEEcccCCCCCeE
Q psy15667        202 --------FDG-LPEGARTRVICGVTHGDPP---LTIRWLKDGKPLSPRFPVNVSDL-D---SFSSLLSINSVSAAHSGE  265 (286)
Q Consensus       202 --------~~~-~~~g~~~~l~c~~~~~~p~---~~~~W~~~g~~~~~~~~~~~~~~-~---~~~~~L~i~~v~~~d~G~  265 (286)
                              ... +.+|+.+.|.|.+....|+   +.+.|+|+|..+........... .   .....|.|.++..+|+|.
T Consensus       319 ~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~  398 (523)
T 2rcj_C          319 SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKE  398 (523)
T ss_pred             eEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCe
Confidence                    111 5679999999998754333   69999999998865432211111 1   113468999999999999


Q ss_pred             EEEEEEecccceeeEEEEE
Q psy15667        266 YTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       266 Y~C~a~N~~g~~~~~~~L~  284 (286)
                      |+|.|.|..|....+..|.
T Consensus       399 Y~C~a~n~~~~~~~~~~~~  417 (523)
T 2rcj_C          399 YKCKVSNKALPAPIEKTIS  417 (523)
T ss_pred             EEEEEeCCCCCCceeEEEE
Confidence            9999999988766555443

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=99.98  E-value=1.7e-31  Score=241.23  Aligned_cols=272  Identities=18%  Similarity=0.260  Sum_probs=181.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~   79 (286)
                      ||.+...+.+..+.+|+.++|.|.+.+.|.+.+.|++ ||..+..+.++.+.    ..+    .|.|.+++.+|+| .|+
T Consensus       114 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~~~~~~----~~~----~L~i~~~~~~d~G~~Y~  185 (524)
T 2ec8_A          114 PAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPD----PKA----GIMIKSVKRAYHRLCLH  185 (524)
T ss_dssp             SSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSCEEEEE----TTT----EEEEESCCGGGTTCEEE
T ss_pred             CCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCCceeEC----CCc----cEEEeccchhhCCceEE
Confidence            4555567777889999999999999987779999988 88888776666432    122    4889999999999 999


Q ss_pred             EEEEcCCEEE-----EEec-------------------------------CCCCCe-eEEEeeCCccC--cC--------
Q psy15667         80 CVAENRAGTC-----EITP-------------------------------YDSGPY-LIAWFKDGRQI--PG--------  112 (286)
Q Consensus        80 C~a~n~~g~~-----~~~~-------------------------------~~~~~~-~~~W~~~g~~l--~~--------  112 (286)
                      |.|.|..+..     .+..                               ...+++ .+.|++++..+  ..        
T Consensus       186 C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~~  265 (524)
T 2ec8_A          186 CSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG  265 (524)
T ss_dssp             EEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESSTTCEEEEEETTCSCCCCEEEEEEECS
T ss_pred             EEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCCcEEEEEEeCCCCCcccccccccccc
Confidence            9998765421     1100                               011223 49999999883  21        


Q ss_pred             ---CCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCC----ceEEecCCCEEEEeeEeeecCCe
Q psy15667        113 ---RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP----KVTAIDGEGLSIKCPVAGYPIEE  185 (286)
Q Consensus       113 ---~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~----~~~~~~g~~~~l~c~~~~~p~~~  185 (286)
                         ......|.|.++..+|+|.|+|.|.|..|... ..+.|.|..+|.+...+    ...+..|+.+.|.|.+.|.|.|.
T Consensus       266 ~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~-~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~  344 (524)
T 2ec8_A          266 DFNYERQATLTISSARVNDSGVFMCYANNTFGSAN-VTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE  344 (524)
T ss_dssp             SSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEE-EEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC
T ss_pred             CCccceEEEEEECCCCHHHCEEEEEEEEecCCceE-EEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc
Confidence               01246799999999999999999999988764 47888898887765432    46788999999999999999999


Q ss_pred             -EEEEEcCCcccccc-------------------cc-------------------------------------cCCCCCC
Q psy15667        186 -VHWEKVPPKIESFA-------------------FP-------------------------------------FDGLPEG  208 (286)
Q Consensus       186 -v~w~~~~~~~~~~~-------------------~~-------------------------------------~~~~~~g  208 (286)
                       +.|.+....+....                   ..                                     .....+|
T Consensus       345 ~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~~~~g  424 (524)
T 2ec8_A          345 HQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNG  424 (524)
T ss_dssp             EEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEEEEEEEEECCSSS
T ss_pred             EEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecCCeEeecccCcCc
Confidence             99998543221100                   00                                     0112344


Q ss_pred             CeEEEEEeeecCCCCCeEEEEeCCeeCCC-------CCCceeeecCCCeeeEE----EcccCCCCCeEEEEEEEecccce
Q psy15667        209 ARTRVICGVTHGDPPLTIRWLKDGKPLSP-------RFPVNVSDLDSFSSLLS----INSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-------~~~~~~~~~~~~~~~L~----i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                         .|.|.+. |.|.|.+.|+|++..+..       .............+.+.    |.....+|+|.|+|.|.|.+|..
T Consensus       425 ---~l~C~~~-g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~s~l~~~~~~d~G~Y~C~a~N~~G~~  500 (524)
T 2ec8_A          425 ---MLQCVAA-GFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKT  500 (524)
T ss_dssp             ---CEEEEEE-EESCCEEECCCC----------CCCCCCCCCCC-CCSSSCEEEEEEECCCSCCC-----CEEECSSCEE
T ss_pred             ---EEEEEEE-eecCCEEEEEECCCcccccccccCCCCceeeeeccCCCCcceEEEEEEEEEccCCEEEEEEEEcCCCce
Confidence               7899884 788999999999876521       11110000001122333    44445799999999999999999


Q ss_pred             eeEEEEEEC
Q psy15667        278 RYSSKLQVK  286 (286)
Q Consensus       278 ~~~~~L~V~  286 (286)
                      ..++.|.|+
T Consensus       501 ~~~~~l~V~  509 (524)
T 2ec8_A          501 SAYFNFAFK  509 (524)
T ss_dssp             ECCCCCCC-
T ss_pred             EEEEEEEEe
Confidence            998888764

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.98  E-value=1.1e-30  Score=222.52  Aligned_cols=232  Identities=19%  Similarity=0.249  Sum_probs=158.8

Q ss_pred             EeccccccccCCCcEEEEEEeecC---------CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGN---------PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~---------p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      ....++.++.+|++++|.|.+.+.         |.+.+.|+|++..+....+..       .+.   .|.|.+++.+|+|
T Consensus        33 ~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~-------~~~---~L~i~~v~~~D~G  102 (329)
T 3oq3_B           33 FGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTRRPLNRRV-------KNG---DLWIANYTSNDSH  102 (329)
T ss_dssp             EEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSCEECSTTE-------ETT---EEEESSCCGGGGG
T ss_pred             cCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCccccCcee-------ecc---eEEEcCCChHhCC
Confidence            344466679999999999999884         668999999998765433321       111   4889999999999


Q ss_pred             -EEEEEEEcCCEEEEE--------------------------------ecCCCC-CeeEEEeeCCccCcCCC-----Ccc
Q psy15667         77 -EYACVAENRAGTCEI--------------------------------TPYDSG-PYLIAWFKDGRQIPGRT-----SST  117 (286)
Q Consensus        77 -~Y~C~a~n~~g~~~~--------------------------------~~~~~~-~~~~~W~~~g~~l~~~~-----~~~  117 (286)
                       .|+|.|.|..|.+..                                ...+.+ ++.+.|+|++..+....     ...
T Consensus       103 s~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~~~~  182 (329)
T 3oq3_B          103 RRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQSGQ  182 (329)
T ss_dssp             CCEEEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEEETT
T ss_pred             CcEEEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEecCCC
Confidence             999999998753210                                001123 47899999999885321     247


Q ss_pred             eEEEccCCCCCCeeEEEEEEcC--Ccceee---eeeEEEEcCCC----ceecCCceEEecCCCEEEEeeEeeecCCeEEE
Q psy15667        118 SLVINPVGREDRGIYQCIARRS--DGDVAQ---GSAELQLGGLP----YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHW  188 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~~~--~g~~~~---~~~~l~v~~~~----~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w  188 (286)
                      .|.|.++..+|+|.|+|.|.|.  .|....   ..+.|.|...+    .+...+...+.                     
T Consensus       183 ~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~---------------------  241 (329)
T 3oq3_B          183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVT---------------------  241 (329)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEEC---------------------
T ss_pred             EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEe---------------------
Confidence            8999999999999999999986  543311   12556665444    11112223333                     


Q ss_pred             EEcCCcccccccccCCCCCCCeEEEEEeeecCC--CCC-eEEEEeCCeeCCC-CCCceee--e-cCCCeeeEEEcccCCC
Q psy15667        189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGD--PPL-TIRWLKDGKPLSP-RFPVNVS--D-LDSFSSLLSINSVSAA  261 (286)
Q Consensus       189 ~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~--p~~-~~~W~~~g~~~~~-~~~~~~~--~-~~~~~~~L~i~~v~~~  261 (286)
                                        +|+.+.|.|.+...+  +++ .+.|+|+|..+.. .......  . .......|.|.++..+
T Consensus       242 ------------------~G~~~~l~C~~~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~  303 (329)
T 3oq3_B          242 ------------------IGEPANITCTAVSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEE  303 (329)
T ss_dssp             ------------------TTSCEEEEEEEEETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGG
T ss_pred             ------------------cCCCEEEEEEEEECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHH
Confidence                              455555555544332  355 7788888887432 2221111  0 0013568999999999


Q ss_pred             CCe-EEEEEEEecccceeeEEEEEEC
Q psy15667        262 HSG-EYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       262 d~G-~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      |+| .|+|.|.|..|....++.|.|+
T Consensus       304 D~G~~Y~C~a~N~~G~~~~~~~l~v~  329 (329)
T 3oq3_B          304 YIGNTYTCRGHNYYFDKTLTTTVVLE  329 (329)
T ss_dssp             GTTCEEEEEEECSSCEEEEEEEEEEC
T ss_pred             HCCCcEEEEEEecCCceEEEEEEEeC
Confidence            999 9999999999999999999886

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.97  E-value=4.8e-30  Score=216.25  Aligned_cols=245  Identities=15%  Similarity=0.186  Sum_probs=159.4

Q ss_pred             cccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE-
Q psy15667         11 EQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT-   88 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~-   88 (286)
                      .+.+.+|+.+.|.|... +.|.|.+.|+||+..+..+.++.+..    .+ ....|.|.+++.+|+|.|+|.|.|..|. 
T Consensus        10 ~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~~~i~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~   84 (312)
T 2y23_A           10 VVNVDDDGVISLNFECDKMTPKSEFSWSKDYVSTEDSPRLEVES----KG-NKTKMTFKDLGMDDLGIYSCDVTDTDGIA   84 (312)
T ss_dssp             EEEECTTCCEEEEEECSSCCTTCCEEEEETTEECTTCTTEEEEE----ET-TEEEEEESSCCGGGCEEEEEEESSSCCCC
T ss_pred             eEEEecCCeEEEEEEEeCCCCCcEEEEEECCEECCCCCCEEEEE----eC-CEEEEEECcCCccCCEEEEEEEEeCCCcE
Confidence            45678999999999876 67999999999999998777776532    22 2246999999999999999999985542 


Q ss_pred             --EEE----------------------------------------ecC-CCCCeeEEEeeCCccCcCCC----------C
Q psy15667         89 --CEI----------------------------------------TPY-DSGPYLIAWFKDGRQIPGRT----------S  115 (286)
Q Consensus        89 --~~~----------------------------------------~~~-~~~~~~~~W~~~g~~l~~~~----------~  115 (286)
                        ..+                                        ... ..+++.+.|+++|..+....          .
T Consensus        85 ~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~  164 (312)
T 2y23_A           85 SSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHIDRNTG  164 (312)
T ss_dssp             EEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEEETTTT
T ss_pred             EEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEEccCCC
Confidence              111                                        111 23457899999998875421          1


Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEee-EeeecCCeEEEEEcCCc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCP-VAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~-~~~~p~~~v~w~~~~~~  194 (286)
                      ...|.|.++..+|+|.|+|.+.+..+..   ...+.+..............        .+. ......|.+.-.     
T Consensus       165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~--------~~~~~~~~~~p~~~~~-----  228 (312)
T 2y23_A          165 IIEMFMEKLQDEDEGTYTFQLQDGKATN---HSTVVLVGDVFKKLQKEAEF--------QRQEWIRKQGPHFVEY-----  228 (312)
T ss_dssp             EEEEEESCCCGGGCEEEEEEEESSSCEE---EEEEEECTHHHHHHHHHHHH--------HHHHHHHHHSSEEEEE-----
T ss_pred             EEEEEEccCCcccCEeEEEEEEeCCceE---EEEEEEcchhhhhhcccccc--------cccchhhccCCceeec-----
Confidence            2339999999999999999998754322   22333211000000000000        000 000000000000     


Q ss_pred             ccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        195 IESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                            ....+.+|+.+.|.|.+. +.|++ .+.|+|+|..+....++.+.   .....|.|.++..+|+|.|+|.|.|.
T Consensus       229 ------~~~~v~~G~~~~l~C~~~-~~p~~~~v~W~~~g~~~~~~~~~~~~---~~~~~L~I~~v~~~d~G~Y~C~a~N~  298 (312)
T 2y23_A          229 ------LSWEVTGECNVLLKCKVA-NIKKETHIVWYKDEREISVDEKHDFK---DGICTLLITEFSKKDAGIYEVILKDD  298 (312)
T ss_dssp             ------EEEEEETTTEEEEEEEEE-SCCSSCEEEEEETTEEEEEECCC-------CEEEEEECSCSGGGCEEEEEEEEST
T ss_pred             ------ceEEEeCCCEEEEEEEEc-CCCCCCEEEEeeCCEECCCCCcEEEE---CCEEEEEECcCCHHHCEEEEEEEEcC
Confidence                  001244677777777765 44555 89999999988644444433   22468999999999999999999999


Q ss_pred             ccceeeEEEEEEC
Q psy15667        274 AAQARYSSKLQVK  286 (286)
Q Consensus       274 ~g~~~~~~~L~V~  286 (286)
                      .|....++.|.|+
T Consensus       299 ~G~~~~~~~l~i~  311 (312)
T 2y23_A          299 RGKDKSRLKLVDE  311 (312)
T ss_dssp             TCCEEEEEEECSC
T ss_pred             CCceeeeeEEEec
Confidence            9999999999874

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.97  E-value=3e-31  Score=226.06  Aligned_cols=228  Identities=27%  Similarity=0.464  Sum_probs=100.1

Q ss_pred             ccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+.++.+.+|++++|.|.+.+. |.+.+.|+|||..+..+.++.+.      +   ..|.|.+++.+|+|.|+|.|.|. 
T Consensus        14 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~------~---~~L~i~~v~~~D~G~Y~C~a~n~-   83 (334)
T 1ry7_B           14 QQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGTGLVPSERVLVG------P---QRLQVLNASHEDSGAYSCRQRLT-   83 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCeeCCCcccEEec------c---ceEEEeecccccCEEEEEEEEeC-
Confidence            4778899999999999999987 67899999999998776665431      1   24889999999999999999887 


Q ss_pred             EEEE------E---------------------------------------------------ecCCCCCeeEEEeeCCcc
Q psy15667         87 GTCE------I---------------------------------------------------TPYDSGPYLIAWFKDGRQ  109 (286)
Q Consensus        87 g~~~------~---------------------------------------------------~~~~~~~~~~~W~~~g~~  109 (286)
                      |...      +                                                   ...+.+++.+.|+|+|..
T Consensus        84 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~  163 (334)
T 1ry7_B           84 QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE  163 (334)
T ss_dssp             -----------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC
T ss_pred             CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE
Confidence            4211      0                                                   000123457999999988


Q ss_pred             CcCC---------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC----ceec--CCceEEecCCCEEE
Q psy15667        110 IPGR---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP----YVRL--IPKVTAIDGEGLSI  174 (286)
Q Consensus       110 l~~~---------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~----~~~~--~~~~~~~~g~~~~l  174 (286)
                      +...         .....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...+    .+..  .....+..|+.+.|
T Consensus       164 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l  242 (334)
T 1ry7_B          164 FRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSI-RQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEF  242 (334)
T ss_dssp             CCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEE-EEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEE
T ss_pred             CcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCE-EEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEE
Confidence            7532         124579999999999999999999998865 446677775421    1111  12234444555555


Q ss_pred             EeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe----CCeeCCCCCCce--eeec--
Q psy15667        175 KCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK----DGKPLSPRFPVN--VSDL--  246 (286)
Q Consensus       175 ~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~----~g~~~~~~~~~~--~~~~--  246 (286)
                      .|.+.                                        |.|.+.+.|+|    +|..+.......  +...  
T Consensus       243 ~C~~~----------------------------------------g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~  282 (334)
T 1ry7_B          243 HCKVY----------------------------------------SDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG  282 (334)
T ss_dssp             CCCCB----------------------------------------CSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSS
T ss_pred             EEEEe----------------------------------------cCCCCeEEEEECCcCCCccccCCCCeeEEEeecCc
Confidence            55444                                        45555666666    455443322111  1100  


Q ss_pred             ----CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        247 ----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       247 ----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                          ......|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       283 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  326 (334)
T 1ry7_B          283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVL  326 (334)
T ss_dssp             CSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCEEEEEEEEEE
T ss_pred             cccccccccEEEEccCCHHHCEEEEEEEeCCCCeEEEEEEEEEE
Confidence                1112479999999999999999999999999999999873

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.97  E-value=1.8e-31  Score=228.82  Aligned_cols=233  Identities=17%  Similarity=0.277  Sum_probs=135.6

Q ss_pred             cccccccCCCcEEEEEEeecCCC-----------CeeEEeeCCEE------cC---CCCeeEeceEEecccceeEEEEEc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT-----------PDIGWTLDGFE------LP---TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~-----------p~v~W~~~~~~------l~---~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ..++.+.+|+.++|.|.+.+.|.           +.+.|+|++..      +.   ...++..      .+.   .|.|.
T Consensus        14 ~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~------~~~---~L~i~   84 (349)
T 4dep_C           14 MRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISK------EKD---VLWFR   84 (349)
T ss_dssp             CCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEE------ETT---EEEES
T ss_pred             eeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEee------cCC---EEEEc
Confidence            45667999999999999998665           99999998842      21   1122211      122   48899


Q ss_pred             ccccCCCeEEEEEEEcCCEEEE----Ee-----------------------------c-------CCCCCeeEEEeeCCc
Q psy15667         69 HVTVEDGGEYACVAENRAGTCE----IT-----------------------------P-------YDSGPYLIAWFKDGR  108 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n~~g~~~----~~-----------------------------~-------~~~~~~~~~W~~~g~  108 (286)
                      +++.+|+|.|+|.|.|..+...    +.                             .       .+.+++.+.|+|||.
T Consensus        85 ~~~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~  164 (349)
T 4dep_C           85 PTLLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCY  164 (349)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTE
T ss_pred             cCChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCE
Confidence            9999999999999999876432    10                             0       112356899999999


Q ss_pred             cCcCCC----CcceEEEccCCCCCCeeEEEEEEcCC-cce--eeeeeEEEEcCC------CceecCCceEEecCCCEEEE
Q psy15667        109 QIPGRT----SSTSLVINPVGREDRGIYQCIARRSD-GDV--AQGSAELQLGGL------PYVRLIPKVTAIDGEGLSIK  175 (286)
Q Consensus       109 ~l~~~~----~~~~l~i~~v~~~d~G~Y~C~a~~~~-g~~--~~~~~~l~v~~~------~~~~~~~~~~~~~g~~~~l~  175 (286)
                      .+..+.    ....|.|.++..+|+|.|+|.|.|.. |..  ......|.|...      |.+.......          
T Consensus       165 ~l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~----------  234 (349)
T 4dep_C          165 KIQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHV----------  234 (349)
T ss_dssp             ECCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------
T ss_pred             ECCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCce----------
Confidence            886532    23569999999999999999999976 432  133455555432      2221111100          


Q ss_pred             eeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeec---CCCCCeEEEEeCCeeCCC-CCCceeee-----c
Q psy15667        176 CPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH---GDPPLTIRWLKDGKPLSP-RFPVNVSD-----L  246 (286)
Q Consensus       176 c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~---~~p~~~~~W~~~g~~~~~-~~~~~~~~-----~  246 (286)
                                                ...+.+|+.+.|.|.+..   |.|.+.+.|+|+|..+.. ..++.+..     .
T Consensus       235 --------------------------~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~  288 (349)
T 4dep_C          235 --------------------------VYEKEPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSR  288 (349)
T ss_dssp             ------------------------------------CCCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCT
T ss_pred             --------------------------eEEEecCCcEEEEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeec
Confidence                                      002445666666666554   467889999999988755 22222211     0


Q ss_pred             -C--CCeeeEEEcccCCCCC-eEEEEEEEecccceeeEEEEEEC
Q psy15667        247 -D--SFSSLLSINSVSAAHS-GEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       247 -~--~~~~~L~i~~v~~~d~-G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                       .  .....|.|.++..+|+ |.|+|.|.|..|....++.|.|+
T Consensus       289 ~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  332 (349)
T 4dep_C          289 TEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQK  332 (349)
T ss_dssp             TCCEEEEECC-------------CEEEEECSSCEEEEECC----
T ss_pred             CCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEEEEEEeee
Confidence             0  0134599999999999 99999999999999999888764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.97  E-value=4.3e-31  Score=223.30  Aligned_cols=231  Identities=21%  Similarity=0.287  Sum_probs=159.9

Q ss_pred             cccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcC----CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      .....+.+|+++.|.|.+.+.| .+.+.|+|++..+.    .+.++..      .++   .|.|.+++.+|+|.|+|.|.
T Consensus        12 ~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~------~~~---~L~i~~v~~~D~G~Y~C~a~   82 (315)
T 1itb_B           12 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQ------HKE---KLWFVPAKVEDSGHYYCVVR   82 (315)
T ss_dssp             CCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCSCCCTTSSSEE------CSS---BEECTTCCGGGCSCCEECCC
T ss_pred             ceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCccccccCCcEec------cCC---eEEECCCChhhCEEEEEEEe
Confidence            3456789999999999999987 88999999986542    2334322      122   48899999999999999999


Q ss_pred             cCCEEEEE---------------------------------ec--------CCCCCeeEEEeeCCccCcCC-----CCcc
Q psy15667         84 NRAGTCEI---------------------------------TP--------YDSGPYLIAWFKDGRQIPGR-----TSST  117 (286)
Q Consensus        84 n~~g~~~~---------------------------------~~--------~~~~~~~~~W~~~g~~l~~~-----~~~~  117 (286)
                      |..|....                                 ..        .+.+++.+.|+|||..+...     ....
T Consensus        83 n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~~~~~  162 (315)
T 1itb_B           83 NSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKD  162 (315)
T ss_dssp             SSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEEEETT
T ss_pred             CCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEeecCc
Confidence            87653211                                 11        11234679999999988532     1246


Q ss_pred             eEEEccCCCCCCeeEEEEEE-cCCcceeeeeeEEE--Ec-----CCCceecCCceEEecCCCEEEEeeEeeecCCeEEEE
Q psy15667        118 SLVINPVGREDRGIYQCIAR-RSDGDVAQGSAELQ--LG-----GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWE  189 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~-~~~g~~~~~~~~l~--v~-----~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~  189 (286)
                      .|.|.++..+|+|.|+|.+. |..|........+.  +.     ..|.+...+..                         
T Consensus       163 ~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~-------------------------  217 (315)
T 1itb_B          163 RLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANE-------------------------  217 (315)
T ss_dssp             EEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSE-------------------------
T ss_pred             eEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCC-------------------------
Confidence            89999999999999999999 77776532222222  21     11211111110                         


Q ss_pred             EcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee----cC-------CCeeeEEEccc
Q psy15667        190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD----LD-------SFSSLLSINSV  258 (286)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~----~~-------~~~~~L~i~~v  258 (286)
                                  ...+.+|+.+.|.|.+. |.|.|.+.|+|+|..+..........    ..       .....|.|.++
T Consensus       218 ------------~~~~~~g~~v~l~C~~~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v  284 (315)
T 1itb_B          218 ------------TMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEI  284 (315)
T ss_dssp             ------------EEECCSSSCEEEEEEEE-ECTTSEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSC
T ss_pred             ------------cEEEeCCCcEEEEEEEe-cCCCCeeEEEECCEECCcccccccccceeeeccCCCceeEEEEEEEEeec
Confidence                        01255667777777664 56777888899888886544321111    00       11348999999


Q ss_pred             CCCC-CeEEEEEEEecccceeeEEEEEEC
Q psy15667        259 SAAH-SGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       259 ~~~d-~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ..+| +|.|+|.|.|..|....++.|.|+
T Consensus       285 ~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          285 ESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             CGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             CHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            9999 999999999999999999999875

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=2.3e-30  Score=216.40  Aligned_cols=230  Identities=20%  Similarity=0.296  Sum_probs=159.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.+    .+.|++++..+    ...     ...+   ..|.|.+++.+|+|.|+|.
T Consensus        12 ~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~----~~~-----~~~~---~~L~i~~~~~~d~G~Y~C~   75 (290)
T 2o26_X           12 PPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN----EMV-----ENKK---NEWIQEKAEATRTGTYTCS   75 (290)
T ss_dssp             CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS----CEE-----EECS---SEEEETTCCGGGCEEEEEE
T ss_pred             CCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce----eee-----cCCC---ceEEEeccCHHhCeEEEEE
Confidence            788998888889999999999999988    89999998876    111     1122   2589999999999999999


Q ss_pred             EEcCCE-EEEEe----c----------------------CCCCC-eeEEE-eeCCccCcCCC-----CcceEEEccCCCC
Q psy15667         82 AENRAG-TCEIT----P----------------------YDSGP-YLIAW-FKDGRQIPGRT-----SSTSLVINPVGRE  127 (286)
Q Consensus        82 a~n~~g-~~~~~----~----------------------~~~~~-~~~~W-~~~g~~l~~~~-----~~~~l~i~~v~~~  127 (286)
                      |.|... .+.+.    +                      ...++ +.+.| ++||..+....     ....|.|.++..+
T Consensus        76 ~~ng~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~p~~~~v~W~~~~g~~l~~~~~~~~~~~~~L~i~~v~~~  155 (290)
T 2o26_X           76 NSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRA  155 (290)
T ss_dssp             ESSSCEEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSCCSCEEEEEEETTSCCCCTTCEEEEETTTEEEEESCCGG
T ss_pred             eeCCccEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCCCCCceEEEEeCCCcCCCCCCceeeCCCCCEEEecccHH
Confidence            988211 11110    0                      01234 78999 57888875421     2368999999999


Q ss_pred             CCe-eEEEEEEcCCcceeeeeeEEEEc----CCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccccccccc
Q psy15667        128 DRG-IYQCIARRSDGDVAQGSAELQLG----GLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPF  202 (286)
Q Consensus       128 d~G-~Y~C~a~~~~g~~~~~~~~l~v~----~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~  202 (286)
                      |+| .|+|.|.|..+...+..+.|.|.    .+|.+...+                                      ..
T Consensus       156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~--------------------------------------~~  197 (290)
T 2o26_X          156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPE--------------------------------------TS  197 (290)
T ss_dssp             GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSC--------------------------------------SB
T ss_pred             HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCC--------------------------------------Cc
Confidence            999 99999999866543334666664    222222111                                      11


Q ss_pred             CCCCCCCeEEEEEeeecCCCCCe-EEEEeCCee----CCCCCCceeee--cCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLT-IRWLKDGKP----LSPRFPVNVSD--LDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~-~~W~~~g~~----~~~~~~~~~~~--~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ..+.+|+.+.|.|.+. |.|.+. +.|+|+|..    +.......+..  .......|.|.++..+|+|.|+|.|.|..|
T Consensus       198 ~~v~~G~~v~l~C~~~-g~p~p~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g  276 (290)
T 2o26_X          198 HLLKKGDTFTVVCTIK-DVSTSVNSMWLKMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFG  276 (290)
T ss_dssp             CCCCTTCCEEEEEEEE-ESSTTCEEEEEEESSSEEECCCEECCEEEEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSC
T ss_pred             ceEecCCcEEEEEEEe-cCCcceeEEEecCCCCCccceeecccccccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCC
Confidence            2355666777777665 555554 888888776    22222111111  012256899999999999999999999999


Q ss_pred             ceeeEEEEEEC
Q psy15667        276 QARYSSKLQVK  286 (286)
Q Consensus       276 ~~~~~~~L~V~  286 (286)
                      ....++.|.|+
T Consensus       277 ~~~~~~~l~V~  287 (290)
T 2o26_X          277 SANVTTTLKVV  287 (290)
T ss_dssp             EEEEEEEECC-
T ss_pred             cEEEEEEEEEE
Confidence            99999988774

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.97  E-value=2.9e-30  Score=218.29  Aligned_cols=235  Identities=17%  Similarity=0.235  Sum_probs=154.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCC-----eeEEeeCCEEc-------------CCCCeeEeceEEecccceeEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTP-----DIGWTLDGFEL-------------PTNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p-----~v~W~~~~~~l-------------~~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +...|.++++..|++++|.|.+.+.|.+     +|.|+|++...             ....++..............+|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4567788899999999999999987766     48999987532             12222221000000000112489


Q ss_pred             EcccccCCCeEEEEEEEcC-CEEEE----Eec----------------------------CCCCCeeEEEeeCCccCcCC
Q psy15667         67 ISHVTVEDGGEYACVAENR-AGTCE----ITP----------------------------YDSGPYLIAWFKDGRQIPGR  113 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~-~g~~~----~~~----------------------------~~~~~~~~~W~~~g~~l~~~  113 (286)
                      |.+++.+|+|.|+|.+.+. .+...    +..                            ...+++.+.|++++..+...
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~  162 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNT  162 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcccccc
Confidence            9999999999999998643 33321    110                            01234689999998876421


Q ss_pred             -----C------CcceEEEccCCCCCCeeEEEEEEcCCccee-eeeeEEEEcCCCceec--CCceEEecCCCEEEEeeEe
Q psy15667        114 -----T------SSTSLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGGLPYVRL--IPKVTAIDGEGLSIKCPVA  179 (286)
Q Consensus       114 -----~------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~-~~~~~l~v~~~~~~~~--~~~~~~~~g~~~~l~c~~~  179 (286)
                           .      ....|.|.++..+|+|.|+|.|.|..+... .....|.|..+|.+..  .+...              
T Consensus       163 ~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~--------------  228 (313)
T 4fqp_A          163 SQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNW--------------  228 (313)
T ss_dssp             EEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCE--------------
T ss_pred             ceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccccccee--------------
Confidence                 0      123588899999999999999999766532 2234555544443221  11122              


Q ss_pred             eecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEccc
Q psy15667        180 GYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV  258 (286)
Q Consensus       180 ~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v  258 (286)
                                               +.+|+.+.|.|.+. |.|.| .+.|+|+|..+....   ...    +..|.|.++
T Consensus       229 -------------------------~~~g~~v~l~C~~~-g~P~p~~v~W~~~~~~l~~~~---~~~----~~~L~i~~v  275 (313)
T 4fqp_A          229 -------------------------YLGQNEATLTCDAR-SNPEPTGYNWSTTMGPLPPFA---VAQ----GAQLLIRPV  275 (313)
T ss_dssp             -------------------------ETTCCCEEEEEEEE-EESCCCEEEEEETTBSCCTTE---EEE----TTEEEECCC
T ss_pred             -------------------------ecCCCeEEEEEEec-CCCCCcEEEEEECCEECCCce---EEe----CCEEEECcC
Confidence                                     23455556666553 44555 688999998775431   111    357999999


Q ss_pred             CCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        259 SAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       259 ~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ..+|+|.|+|.|.|.+|....++.|.|+
T Consensus       276 ~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  303 (313)
T 4fqp_A          276 DKPINTTLICNVTNALGARQAELTVQVK  303 (313)
T ss_dssp             SSCCEEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ChhhCEEEEEEEEeCCCcEEEEEEEEEE
Confidence            9999999999999999999999999874

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=3.6e-30  Score=228.19  Aligned_cols=256  Identities=16%  Similarity=0.225  Sum_probs=174.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCC---eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP---DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ..+...+.+..+.+|++++|.|.+.|.|++   .|+|+|||..|..+....        ......|.|.++..+|+|.|+
T Consensus        87 ~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~--------~~~~~~L~i~~~~~~d~G~Y~  158 (450)
T 1z7z_I           87 ERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVG--------EPAEVTTTVLVRRDHHGANFS  158 (450)
T ss_dssp             SEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCT--------TTEEEEEEEECCSSCSSCEEE
T ss_pred             CcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccc--------cccceEEEEEeeccccCceEE
Confidence            334456666889999999999999999888   999999999885432211        111235899999999999999


Q ss_pred             EEEEcCCEE------------EE--Ee--------------------------cCCC-C--CeeEEEeeCCccCcCCCC-
Q psy15667         80 CVAENRAGT------------CE--IT--------------------------PYDS-G--PYLIAWFKDGRQIPGRTS-  115 (286)
Q Consensus        80 C~a~n~~g~------------~~--~~--------------------------~~~~-~--~~~~~W~~~g~~l~~~~~-  115 (286)
                      |.|.|..|.            ..  +.                          ..+. +  .+.+.|+++|..+..+.. 
T Consensus       159 C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W~~~~~~~~~~~~~  238 (450)
T 1z7z_I          159 CRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY  238 (450)
T ss_dssp             EEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEEEEETTEECCCEEEE
T ss_pred             EEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEEEeCCCEeCCceEEe
Confidence            999987441            00  00                          0011 2  468999999988765211 


Q ss_pred             -cceEE---EccCCCCCCe--eEEEEEEcCCcceeeeeeEEEEcC--CCceecCCceEEecCCCEEEEeeEeeecCCeEE
Q psy15667        116 -STSLV---INPVGREDRG--IYQCIARRSDGDVAQGSAELQLGG--LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVH  187 (286)
Q Consensus       116 -~~~l~---i~~v~~~d~G--~Y~C~a~~~~g~~~~~~~~l~v~~--~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~  187 (286)
                       ...+.   +.++..+|+|  .|+|.+.|..|.. ...+.|.|..  .|.+... ...+.+|+.+.|.|.+.  |.|.+.
T Consensus       239 ~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~-~~~~~l~V~~~~~p~i~~~-~~~v~~G~~v~l~C~~~--p~p~i~  314 (450)
T 1z7z_I          239 GNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPAPNVILT-KPEVSEGTEVTVKCEAH--PRAKVT  314 (450)
T ss_dssp             ETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCCCEEEES-CSEEETTCEEEEEEEC---------
T ss_pred             cCCceeEEEEEEeEhhhCCcEEEEEEEccCCccE-EEEEEEEEecCCCCeEecC-CeeEeCCCcEEEEEecC--CCCEeE
Confidence             11222   2277999999  9999999998865 3467787765  3444333 45788999999999998  888999


Q ss_pred             EEEcCCc--------c--cc----------c---------------------------c---c-ccCCCCCCCeEEEEEe
Q psy15667        188 WEKVPPK--------I--ES----------F---------------------------A---F-PFDGLPEGARTRVICG  216 (286)
Q Consensus       188 w~~~~~~--------~--~~----------~---------------------------~---~-~~~~~~~g~~~~l~c~  216 (286)
                      | ...+.        +  ..          +                           .   . ....+.+|+.+.|.|.
T Consensus       315 W-~g~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~  393 (450)
T 1z7z_I          315 L-NGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQ  393 (450)
T ss_dssp             ----------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCC
T ss_pred             E-CCEEcCCCCceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEe
Confidence            9 31110        0  00          0                           0   0 0113567999999998


Q ss_pred             eecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        217 VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       217 ~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      + .|.|.|.+.|+|+|..+...           +..+   .+..+|+|.|+|.|.|.+|....++.|.|+
T Consensus       394 ~-~g~P~p~i~W~~~g~~~~~~-----------g~~~---~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  448 (450)
T 1z7z_I          394 A-WGNPLPELKCLKDGTFPLPI-----------GESV---TVTRDLEGTYLCRARSTQGEVTREVTVNVL  448 (450)
T ss_dssp             C-EEESCCEEEEEETTTEECCT-----------TSCE---ECCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             c-ccCCCCcEEEEECCcccCCC-----------CCeE---eEehhhCeEEEEEEEeCCCceeEEEEEEEE
Confidence            8 48899999999999743221           1222   688899999999999999999999999884

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.97  E-value=1.8e-29  Score=210.61  Aligned_cols=233  Identities=20%  Similarity=0.311  Sum_probs=157.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|++++|.|.+.+    .+.|++++....   ....    . ...  ..|.|.+++.+|+|.|+|.
T Consensus         4 ~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~---~~~~----~-~~~--~~L~i~~~~~~d~G~Y~C~   69 (289)
T 3ejj_X            4 APVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW---TLDP----E-SPG--STLTTRNATFKNTGTYRCT   69 (289)
T ss_dssp             CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS---EECC----C-SSC--CEEEESSCCGGGCEEEEEE
T ss_pred             CcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE---EEec----c-CCc--cEEEEeeeccccCEEEEEE
Confidence            788888888889999999999999987    499998764321   1110    0 111  3589999999999999999


Q ss_pred             EEcCCEEE----EEec----------------------------CCCCCe-eEEEee-CCccCcCCC-----CcceEEEc
Q psy15667         82 AENRAGTC----EITP----------------------------YDSGPY-LIAWFK-DGRQIPGRT-----SSTSLVIN  122 (286)
Q Consensus        82 a~n~~g~~----~~~~----------------------------~~~~~~-~~~W~~-~g~~l~~~~-----~~~~l~i~  122 (286)
                      |.|..+..    .+..                            ...+++ .+.|++ ++..+....     ....|.|.
T Consensus        70 ~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~  149 (289)
T 3ejj_X           70 ELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIR  149 (289)
T ss_dssp             CCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEETTTEEEES
T ss_pred             EeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECCCCCEEEe
Confidence            98766531    1110                            001122 399986 666664321     24679999


Q ss_pred             cCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC----CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccccc
Q psy15667        123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGG----LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESF  198 (286)
Q Consensus       123 ~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~----~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~  198 (286)
                      ++..+|+|.|+|.+.+.........+.|.|..    .|.+...+.                                   
T Consensus       150 ~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~-----------------------------------  194 (289)
T 3ejj_X          150 KAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPS-----------------------------------  194 (289)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESS-----------------------------------
T ss_pred             ecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCC-----------------------------------
Confidence            99999999999999954333334456666652    222111110                                   


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       199 ~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                         ...+.+|+.+.|.|.+..+.|.+.+.|++++..+........... ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       195 ---~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  271 (289)
T 3ejj_X          195 ---KLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTR  271 (289)
T ss_dssp             ---SEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEE
T ss_pred             ---ceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCc
Confidence               112456777777777765578889999999988764322111110 0125689999999999999999999999999


Q ss_pred             eeEEEEEEC
Q psy15667        278 RYSSKLQVK  286 (286)
Q Consensus       278 ~~~~~L~V~  286 (286)
                      ..++.|.+.
T Consensus       272 ~~s~~L~~~  280 (289)
T 3ejj_X          272 TATMNFQVV  280 (289)
T ss_dssp             EEEEEEECC
T ss_pred             cccEEEEEE
Confidence            999999863

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=3.5e-30  Score=222.26  Aligned_cols=231  Identities=15%  Similarity=0.169  Sum_probs=155.7

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC--------------CCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP--------------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +.+.+|++++|.|.+.+.|.+.+.|+|++..+.              ...|+.+.......+  ...|.|.+++.+|+|.
T Consensus         4 v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~--~~~L~I~~v~~~D~G~   81 (363)
T 1wio_A            4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG--NFPLIIKNLKIEDSDT   81 (363)
T ss_dssp             EEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTT--CCCEEECSCCGGGCEE
T ss_pred             EEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCC--eEEEEECCCCHHHCEE
Confidence            467899999999999999999999999985421              112221100000011  1248999999999999


Q ss_pred             EEEEEEcCCEEEEEe-----------------------cCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEE
Q psy15667         78 YACVAENRAGTCEIT-----------------------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQC  134 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~-----------------------~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C  134 (286)
                      |+|.|.|..+.+.+.                       ....+++.+.|+++|..+..  ....|.|.++..+|+|.|+|
T Consensus        82 Y~C~~~n~~~~~~l~V~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C  159 (363)
T 1wio_A           82 YICEVEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ--GGKTLSVSQLELQDSGTWTC  159 (363)
T ss_dssp             EEEEETTEEEEEEEEEEEEEESSCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE--ESSEEEECSBCGGGCEECEE
T ss_pred             EEEEEEECCCcEEEEEEeCCCCCceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc--cceEEEEeeCChhcCCEEEE
Confidence            999999887654432                       11234568999999876532  34689999999999999999


Q ss_pred             EEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEE
Q psy15667        135 IARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI  214 (286)
Q Consensus       135 ~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~  214 (286)
                      .+.|..+.. ...+.+.|...|...  ....+.+|+.+.|.|.+.+.+.                               
T Consensus       160 ~a~~~~~~~-~~~~~l~v~~~p~~~--~~~~~~~G~~v~l~C~~~~~~~-------------------------------  205 (363)
T 1wio_A          160 TVLQNQKKV-EFKIDIVVLAFQKAS--SIVYKKEGEQVEFSFPLAFTVE-------------------------------  205 (363)
T ss_dssp             EEEETTEEE-EECCEECEECCSCSE--EEEEEETBCCEEEECCCCCCCC-------------------------------
T ss_pred             EEecCCCeE-EEEEEEEEecCCCCC--CceEEecCCEEEEEEEEecccc-------------------------------
Confidence            999875543 334556555444322  2234556666666666554110                               


Q ss_pred             EeeecC-CCCCeEEEEeCCeeCCC--------CCCceeee---------cCCCeeeEEEcccCCCCCeEEEEEEEec--c
Q psy15667        215 CGVTHG-DPPLTIRWLKDGKPLSP--------RFPVNVSD---------LDSFSSLLSINSVSAAHSGEYTCVASNT--A  274 (286)
Q Consensus       215 c~~~~~-~p~~~~~W~~~g~~~~~--------~~~~~~~~---------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~--~  274 (286)
                           + .|.+.+.|+|+|..+..        ..++.+..         .......|.|.++..+|+|.|+|.|.|.  .
T Consensus       206 -----~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~  280 (363)
T 1wio_A          206 -----KLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKT  280 (363)
T ss_dssp             -----SSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTT
T ss_pred             -----cCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhc
Confidence                 1 34556666666665544        22222211         0112348999999999999999999999  9


Q ss_pred             cceeeEEEEEE
Q psy15667        275 AQARYSSKLQV  285 (286)
Q Consensus       275 g~~~~~~~L~V  285 (286)
                      |....++.|.|
T Consensus       281 g~~~~~~~l~V  291 (363)
T 1wio_A          281 GKLHQEVNLVV  291 (363)
T ss_dssp             CCEEEEEEEEE
T ss_pred             CeEEEEEeEEE
Confidence            99999988887

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.97  E-value=1.3e-30  Score=222.72  Aligned_cols=242  Identities=19%  Similarity=0.329  Sum_probs=167.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-------cCCCCeeEEeeCCEEc--CCC--CeeEeceEEecccceeEEEEEccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-------GNPTPDIGWTLDGFEL--PTN--NRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-------g~p~p~v~W~~~~~~l--~~~--~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .|.|...+.++.+.+|++++|.|.+.       +.|.+.+.|++++..+  ...  .++..      .++   .|.|.++
T Consensus        18 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~------~~~---~L~i~~v   88 (339)
T 3o4o_C           18 CRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVPGEEETRMWA------QDG---ALWLLPA   88 (339)
T ss_dssp             CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCSCCSSSCEEE------ETT---EEEESSB
T ss_pred             hHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccCccccccEEe------eCC---eEEECCC
Confidence            57888899999999999999999998       8999999999999874  332  22211      122   4889999


Q ss_pred             ccCCCeEEEEEEEcCCEEEEE---------------------------------e-----cCCCCCeeEEEeeCCccCcC
Q psy15667         71 TVEDGGEYACVAENRAGTCEI---------------------------------T-----PYDSGPYLIAWFKDGRQIPG  112 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~---------------------------------~-----~~~~~~~~~~W~~~g~~l~~  112 (286)
                      +.+|+|.|+|.|.|..|....                                 .     ....+++.+.|+|||..+..
T Consensus        89 ~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~  168 (339)
T 3o4o_C           89 LQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDK  168 (339)
T ss_dssp             CTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCT
T ss_pred             CcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCC
Confidence            999999999999998764321                                 0     01123467999999998864


Q ss_pred             CC-------CcceEEEccCCCCCCeeEEEEEEcCCcce---eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeec
Q psy15667        113 RT-------SSTSLVINPVGREDRGIYQCIARRSDGDV---AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYP  182 (286)
Q Consensus       113 ~~-------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~---~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p  182 (286)
                      ..       ....|.|.++..+|+|.|+|.+.|..|..   ....+.|.|...+..                       .
T Consensus       169 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~-----------------------~  225 (339)
T 3o4o_C          169 DNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE-----------------------T  225 (339)
T ss_dssp             TCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCC-----------------------C
T ss_pred             CCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCC-----------------------C
Confidence            31       22579999999999999999999987642   233456665432100                       0


Q ss_pred             CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeee--cCCC-CCeEEEEeCCeeCCCCC---------CceeeecCC--
Q psy15667        183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT--HGDP-PLTIRWLKDGKPLSPRF---------PVNVSDLDS--  248 (286)
Q Consensus       183 ~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--~~~p-~~~~~W~~~g~~~~~~~---------~~~~~~~~~--  248 (286)
                      .|.+         .. ......+.+|+.+.|.|.+.  .|.| ++.+.|+++|..+....         +..+.....  
T Consensus       226 ~P~i---------~~-~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~~g~~~  295 (339)
T 3o4o_C          226 IPVI---------IS-PLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYSENNENY  295 (339)
T ss_dssp             CCEE---------CC-CSCCCCCCCCSCCCCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECCCSSSCE
T ss_pred             CCEE---------ec-CCceeEeccCCCEEEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEecccCceE
Confidence            0000         00 00123466788888888773  4566 78899999988764221         111111100  


Q ss_pred             CeeeEEEcccCCCCC-eEEEEEEEecccceeeEEEEEE
Q psy15667        249 FSSLLSINSVSAAHS-GEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~-G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ....|.|.++..+|+ |.|+|.|.|.+|.....+.|.+
T Consensus       296 ~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~~~~  333 (339)
T 3o4o_C          296 IEVPLIFDPVTREDLHMDFKCVVHNTLSFQTLRTTVKE  333 (339)
T ss_dssp             EEECCEECSSCCCSCCCCCEEEEEETTEEECCBCCCCC
T ss_pred             EEEEEEEEEechhhcCccEEEEEEeccCceEEEEEhhH
Confidence            012799999999997 9999999999999998887754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=1.4e-28  Score=222.19  Aligned_cols=272  Identities=15%  Similarity=0.203  Sum_probs=177.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+....+.+|+.++|.|.+.|.|++  .|+|+|||..|..+.++.... ....+.  ....|.|.++..+|+|.
T Consensus       114 ~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~G~  192 (523)
T 2rcj_C          114 NPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADGSPVKAGVETTKPS-KQSNNKYAASSYLSLTPEQWKSHRS  192 (523)
T ss_pred             CCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCCCCCCCceEecccc-ccCCCCEEEEEEEEEechhcCCCce
Confidence            6777777777778899999999999998764  999999999886543322100 011111  12358999999999999


Q ss_pred             EEEEEEcCCEEEEE----------------e-------------------cCCC-CCe-eEEEeeCCccCcCC------C
Q psy15667         78 YACVAENRAGTCEI----------------T-------------------PYDS-GPY-LIAWFKDGRQIPGR------T  114 (286)
Q Consensus        78 Y~C~a~n~~g~~~~----------------~-------------------~~~~-~~~-~~~W~~~g~~l~~~------~  114 (286)
                      |+|.|.|..|....                .                   ..+. +++ .++|+|||..+...      .
T Consensus       193 Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k~g~~~~~~~~~~~~~  272 (523)
T 2rcj_C          193 YSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQPVTVSWNSGALTSGVHTFPAVLQ  272 (523)
T ss_pred             EEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCCeEEEEecCCcccceEeCCcEec
Confidence            99999997663210                0                   0011 224 79999999875321      0


Q ss_pred             C------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-Cc-eE-EecCCCEEEEeeEeeecC--
Q psy15667        115 S------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PK-VT-AIDGEGLSIKCPVAGYPI--  183 (286)
Q Consensus       115 ~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~-~~-~~~g~~~~l~c~~~~~p~--  183 (286)
                      .      ...|.|.++..+| |.|+|.|.|..|.. .....|.+...|.+... +. .. +.+|+.+.|.|.+.|.|+  
T Consensus       273 ~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~-~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~  350 (523)
T 2rcj_C          273 SSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNT-KVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHED  350 (523)
T ss_pred             CCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCc-ceEEecCCCcCceEEecCCCchhhcccCCceEEEEEEecccCCC
Confidence            1      2379999999999 99999999998875 23455555545554332 22 22 678999999999999654  


Q ss_pred             --CeEEEEEcCCcccc----------------------------------c---------------c-------cc----
Q psy15667        184 --EEVHWEKVPPKIES----------------------------------F---------------A-------FP----  201 (286)
Q Consensus       184 --~~v~w~~~~~~~~~----------------------------------~---------------~-------~~----  201 (286)
                        +.|.|.+....+..                                  |               .       .+    
T Consensus       351 ~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~  430 (523)
T 2rcj_C          351 PQVKFNWYVDGVQVHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYT  430 (523)
T ss_pred             CceEEEEEECCeEccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEcccCCCCCCEEEE
Confidence              48999984211100                                  0               0       00    


Q ss_pred             ---cCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeeec-CC---CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        202 ---FDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       202 ---~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~-~~---~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                         ......|+.+.|.|.+....|+ ..+.|+|+|..+.......+... ++   ....|.|.....+|+|.|+|.|.|.
T Consensus       431 ~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~gt~~~~~~l~v~~~~~~~~g~Y~C~a~n~  510 (523)
T 2rcj_C          431 LPPSREEMTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHE  510 (523)
T ss_pred             eCCChHHccCCceEEEEEEEeeECCCCEEEEEECCEECCCeeeccceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEcC
Confidence               0000124459999998754433 49999999998864322222111 11   1234556666668899999999998


Q ss_pred             ccc
Q psy15667        274 AAQ  276 (286)
Q Consensus       274 ~g~  276 (286)
                      ...
T Consensus       511 ~l~  513 (523)
T 2rcj_C          511 ALH  513 (523)
T ss_pred             CcC
Confidence            643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=1.3e-29  Score=215.47  Aligned_cols=237  Identities=17%  Similarity=0.268  Sum_probs=140.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcC---------CCCeeEeceEEecccceeEEEEEccccc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELP---------TNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~---------~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ..|...+.++.+.+|++++|.|.+.+. |.+.|.|+|++.++.         ...|+...............|.|.+++.
T Consensus         4 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~   83 (327)
T 2wng_A            4 LQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITP   83 (327)
T ss_dssp             CCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCG
T ss_pred             eEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCcc
Confidence            456677788899999999999999997 989999999975421         1113321100000001123599999999


Q ss_pred             CCCeEEEEEEEcCCEE-----------EEEe--c------------------------CCCCCe--eEEEeeCCccCcCC
Q psy15667         73 EDGGEYACVAENRAGT-----------CEIT--P------------------------YDSGPY--LIAWFKDGRQIPGR  113 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~-----------~~~~--~------------------------~~~~~~--~~~W~~~g~~l~~~  113 (286)
                      +|+|.|+|.|.|..+.           ..+.  +                        .+.+++  .+.|+|||..+...
T Consensus        84 ~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~  163 (327)
T 2wng_A           84 ADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDF  163 (327)
T ss_dssp             GGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCE
T ss_pred             ccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEcccc
Confidence            9999999999987431           1110  0                        001122  79999999988532


Q ss_pred             C-------C------cceEEEccCCCCCCeeEEEEEEcCCcce--eeeeeEEE--EcCCCceecCCceEEecCCCEEEEe
Q psy15667        114 T-------S------STSLVINPVGREDRGIYQCIARRSDGDV--AQGSAELQ--LGGLPYVRLIPKVTAIDGEGLSIKC  176 (286)
Q Consensus       114 ~-------~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~--~~~~~~l~--v~~~~~~~~~~~~~~~~g~~~~l~c  176 (286)
                      .       .      ...|.|.....+|+|.|+|.+.|..+..  ......+.  +..+|.+...+              
T Consensus       164 ~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~--------------  229 (327)
T 2wng_A          164 QTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQ--------------  229 (327)
T ss_dssp             EEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEE--------------
T ss_pred             ccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEec--------------
Confidence            1       1      1346677777777899999999987652  11223332  12222211110              


Q ss_pred             eEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCC----Cee
Q psy15667        177 PVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDS----FSS  251 (286)
Q Consensus       177 ~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~----~~~  251 (286)
                                                ..+.+|+.+.|.|.+....|++ .+.|+|+|..+.......+.....    ...
T Consensus       230 --------------------------~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~~  283 (327)
T 2wng_A          230 --------------------------QPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNWMS  283 (327)
T ss_dssp             --------------------------ECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEEEE
T ss_pred             --------------------------CCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEEEE
Confidence                                      0145666677777665333443 789999998774321111111111    124


Q ss_pred             eEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        252 LLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      .|.|..+..+|+|.|+|.|.|.+|....
T Consensus       284 ~L~i~~~~~~d~G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          284 WLLVNVSAHRDDVKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             EEEC-------CCEEEEEEEETTCCCEE
T ss_pred             EEEEccccccCCCEEEEEEEeCCCCCch
Confidence            6889999999999999999999986533

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=2.6e-30  Score=217.87  Aligned_cols=228  Identities=18%  Similarity=0.259  Sum_probs=148.2

Q ss_pred             cccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcC-----------------CCCeeEeceEEecccceeEEEEEccc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELP-----------------TNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~-----------------~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      ++++++.+|++++|.|.+.+. |.+.|+|+|++....                 ...|+.....  ..+  ..+|.|.++
T Consensus         6 ~p~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~--~~~--~~sL~I~~v   81 (308)
T 4fom_A            6 EPHVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNY--SLN--DATITLHNI   81 (308)
T ss_dssp             CCSCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCC--SSS--BCCEEECSC
T ss_pred             CCEeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeecc--CCC--ceEEEEccC
Confidence            457889999999999998754 556799998653211                 0112211110  011  124899999


Q ss_pred             ccCCCeEEEEEEEcC-CEEEEE----e------------------------------cCCCCCeeEEEeeCCccCcCCC-
Q psy15667         71 TVEDGGEYACVAENR-AGTCEI----T------------------------------PYDSGPYLIAWFKDGRQIPGRT-  114 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~-~g~~~~----~------------------------------~~~~~~~~~~W~~~g~~l~~~~-  114 (286)
                      +.+|+|.|+|.|.|. .|....    .                              ..+.+++.+.|++++..+.... 
T Consensus        82 ~~~D~G~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~  161 (308)
T 4fom_A           82 GFSDSGKYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT  161 (308)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE
T ss_pred             CHHHCEEEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc
Confidence            999999999999875 333210    0                              0012346899999998874311 


Q ss_pred             --------CcceEEEccCCCCCCeeEEEEEEcCCccee-eeeeEEEEcCCCceecC--CceEEecCCCEEEEeeEeeecC
Q psy15667        115 --------SSTSLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGGLPYVRLI--PKVTAIDGEGLSIKCPVAGYPI  183 (286)
Q Consensus       115 --------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~-~~~~~l~v~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~p~  183 (286)
                              ....|.|.++..+|+|.|+|.|.|..+... ...+.|.|...|.+...  ....+..|+.++|.|.+.|   
T Consensus       162 ~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g---  238 (308)
T 4fom_A          162 SFPNETATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADA---  238 (308)
T ss_dssp             ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEE---
T ss_pred             eeeeecccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEec---
Confidence                    124699999999999999999999876532 23445555444433221  1223333444444444443   


Q ss_pred             CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCC
Q psy15667        184 EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAH  262 (286)
Q Consensus       184 ~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d  262 (286)
                                                           .|+| .+.|+|++..+.....      ...+..|.|.+++.+|
T Consensus       239 -------------------------------------~P~p~~v~W~k~~~~~~~~~~------~~~~~~l~i~~v~~~d  275 (308)
T 4fom_A          239 -------------------------------------NPPPFKSVWSRLDGQWPDGLL------ASDNTLHFVHPLTFNY  275 (308)
T ss_dssp             -------------------------------------ESCEEEEECCBSSSCCCSSCB------CSTTEEECCSCCCSCC
T ss_pred             -------------------------------------CCCCcEEEEEECCeECCCcEE------EcCCeEEEECCCChhh
Confidence                                                 3444 5778888876644311      1224567789999999


Q ss_pred             CeEEEEEEEecccceeeEEEEEEC
Q psy15667        263 SGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       263 ~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +|.|+|.|.|.+|..+.++.|.|+
T Consensus       276 ~G~Y~C~A~N~~G~~~~~~~l~V~  299 (308)
T 4fom_A          276 SGVYICKVTNSLGQRSDQKVIYIS  299 (308)
T ss_dssp             CSEEEEEEEETTEEEEEEEECCEE
T ss_pred             CEEEEEEEEeCCCcEEEEEEEEEE
Confidence            999999999999999999888773

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.97  E-value=1.5e-29  Score=211.44  Aligned_cols=233  Identities=19%  Similarity=0.290  Sum_probs=158.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++++.+|++++|.|.+.+.    +.|++++..     ++...    .. .....|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-----~~~~~----~~-~~~~~L~i~~~~~~d~G~Y~C~   69 (292)
T 4dkd_C            4 IPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP-----HWTLY----SD-GSSSILSTNNATFQNTGTYRCT   69 (292)
T ss_dssp             CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS-----SCEEC----CB-TTEEEEEESSCCGGGCSCEEEC
T ss_pred             CceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC-----ceEEe----cc-CceEEEEEcccccccCEEEEEE
Confidence            8999999999999999999999999884    999976432     11111    11 1123699999999999999999


Q ss_pred             EEcCCEEEE----Eec--------------------------C-CCCC--eeEEEeeC-CccCcCC-----CCcceEEEc
Q psy15667         82 AENRAGTCE----ITP--------------------------Y-DSGP--YLIAWFKD-GRQIPGR-----TSSTSLVIN  122 (286)
Q Consensus        82 a~n~~g~~~----~~~--------------------------~-~~~~--~~~~W~~~-g~~l~~~-----~~~~~l~i~  122 (286)
                      |.|..|...    +..                          . ..+.  +.+.|+++ +..+...     .....|.|.
T Consensus        70 ~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~  149 (292)
T 4dkd_C           70 EPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIH  149 (292)
T ss_dssp             CCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESSGGGGSSEEEEEGGGCCCCSSCCEECCSSSCCEET
T ss_pred             EccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCCCCcceeEEEEecCCCccccCCcccccCCceEEEC
Confidence            998655321    000                          0 0112  56999997 5555321     123559999


Q ss_pred             cCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC----CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccccc
Q psy15667        123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGG----LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESF  198 (286)
Q Consensus       123 ~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~----~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~  198 (286)
                      ++..+|+|.|+|.+.|..+...+..+.|.|..    +|.+...+.                                   
T Consensus       150 ~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~-----------------------------------  194 (292)
T 4dkd_C          150 RAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPA-----------------------------------  194 (292)
T ss_dssp             TCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESS-----------------------------------
T ss_pred             CCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCC-----------------------------------
Confidence            99999999999999988776544466777654    222211110                                   


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        199 AFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       199 ~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                         ...+.+|+.+.|.|.+...++++.+.|++++..+.......+... ......|.|.++..+|+|.|+|.|.|..|..
T Consensus       195 ---~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  271 (292)
T 4dkd_C          195 ---ELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKH  271 (292)
T ss_dssp             ---CBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEE
T ss_pred             ---ceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCc
Confidence               122356777777777764455577888888876644332221111 0123589999999999999999999999999


Q ss_pred             eeEEEEEEC
Q psy15667        278 RYSSKLQVK  286 (286)
Q Consensus       278 ~~~~~L~V~  286 (286)
                      ..++.|.|+
T Consensus       272 ~~~~~l~V~  280 (292)
T 4dkd_C          272 STSMFFRVV  280 (292)
T ss_dssp             EEEEEECC-
T ss_pred             eeEEEEEEe
Confidence            999998874

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.97  E-value=2.3e-29  Score=222.15  Aligned_cols=276  Identities=17%  Similarity=0.212  Sum_probs=184.2

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCC----CeeEEeeCC--EEc------------CCCCeeEeceEEecccceeEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPT----PDIGWTLDG--FEL------------PTNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~----p~v~W~~~~--~~l------------~~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      .|...+.++++.+|++++|.|.+.+.|.    +.+.|+|++  ..+            ....|+....    .+ ....|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~~-~~~~L   77 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSG----SR-TDFTL   77 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEE----ET-TEEEE
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEc----cC-CcEEE
Confidence            4666788889999999999999998887    489999963  221            0123443321    11 12369


Q ss_pred             EEcccccCCCeEEEEEEEcCCE-------EEEEe-----------c-----------------CC-CCCe-eEEEeeCCc
Q psy15667         66 NISHVTVEDGGEYACVAENRAG-------TCEIT-----------P-----------------YD-SGPY-LIAWFKDGR  108 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~~g-------~~~~~-----------~-----------------~~-~~~~-~~~W~~~g~  108 (286)
                      .|.+++.+|+|.|+|.|.|..+       ...+.           +                 .+ .+++ .+.|+|||.
T Consensus        78 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~  157 (438)
T 1qgc_4           78 TIDPVEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  157 (438)
T ss_dssp             EESSCCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTE
T ss_pred             EeCCCcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCE
Confidence            9999999999999999998653       11111           0                 00 1223 799999998


Q ss_pred             cCcCC---------CC------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC-CceecCCceEEecCCCE
Q psy15667        109 QIPGR---------TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVRLIPKVTAIDGEGL  172 (286)
Q Consensus       109 ~l~~~---------~~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~-~~~~~~~~~~~~~g~~~  172 (286)
                      .+...         ..      ...|.|.++..+|+|.|+|.|.|..+.. .....+..... +.+...+...+.+|+.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~~~~~~v~~G~~v  236 (438)
T 1qgc_4          158 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVESGGGLVKPGGSL  236 (438)
T ss_dssp             EECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEEECCEEECTTCCE
T ss_pred             EcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCC-ceecccccccceeEEecCCceEEecCCcE
Confidence            77543         01      2479999999999999999999987753 11222222111 22333345678899999


Q ss_pred             EEEeeEeeec--CCeEEEEEc--CCccc---------------------------------c---------------ccc
Q psy15667        173 SIKCPVAGYP--IEEVHWEKV--PPKIE---------------------------------S---------------FAF  200 (286)
Q Consensus       173 ~l~c~~~~~p--~~~v~w~~~--~~~~~---------------------------------~---------------~~~  200 (286)
                      .|.|.+.+.|  .+.+.|.+.  ...+.                                 .               |..
T Consensus       237 ~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a  316 (438)
T 1qgc_4          237 KLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVR  316 (438)
T ss_dssp             EEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEE
T ss_pred             EEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEE
Confidence            9999999988  678999873  10000                                 0               000


Q ss_pred             c----------------------------------cCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeee
Q psy15667        201 P----------------------------------FDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSD  245 (286)
Q Consensus       201 ~----------------------------------~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~  245 (286)
                      .                                  ...+.+|+.+.|.|.+....|.+ .+.|+|+|..+.......+..
T Consensus       317 ~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~  396 (438)
T 1qgc_4          317 REDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ  396 (438)
T ss_dssp             CCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEEECCCEEE
T ss_pred             EccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCceeecCcccc
Confidence            0                                  11245799999999987443766 999999998764211111111


Q ss_pred             cC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        246 LD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       246 ~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .+  .....|.|.++..+| |.|+|.|.|.+|.......|.+|
T Consensus       397 ~g~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~g~~~~~~~i~~k  438 (438)
T 1qgc_4          397 SDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVPR  438 (438)
T ss_dssp             TTEEEEEEEEEEEEEHHHH-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             CCcEEEEEEEEEehhhcCC-ceEEEEEEeCCCCcceeeecCCC
Confidence            11  113468999999999 99999999999988777766543

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=6.3e-29  Score=224.40  Aligned_cols=239  Identities=18%  Similarity=0.253  Sum_probs=147.9

Q ss_pred             ccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecc-cceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          8 SFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGH-GDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+.+..+.+|+.++|.|.+. |.|.|.++|++++..+.....+....+.... ......|.|.+++.+|+|.|+|.|.|.
T Consensus       233 ~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~  312 (527)
T 3qs9_E          233 TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH  312 (527)
T ss_dssp             SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSCCCGGGEEEEEEEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE
T ss_pred             CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEECCCCceeeeeeeccCcceeeEEEEEEccCCcccCeEEEEEEEeC
Confidence            45567889999999999996 9999999999999888654443221111000 011234999999999999999999986


Q ss_pred             CEEEEE--e----------c-------------------CCCCCeeEEEeeCCccCcCCC----CcceEEEccCCCCCCe
Q psy15667         86 AGTCEI--T----------P-------------------YDSGPYLIAWFKDGRQIPGRT----SSTSLVINPVGREDRG  130 (286)
Q Consensus        86 ~g~~~~--~----------~-------------------~~~~~~~~~W~~~g~~l~~~~----~~~~l~i~~v~~~d~G  130 (286)
                       ....+  .          +                   .+.+++.+.|+|||+.+....    ....|.|.++..+|+|
T Consensus       313 -~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~L~I~~v~~~D~G  391 (527)
T 3qs9_E          313 -PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNHKHQPG  391 (527)
T ss_dssp             -EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETTEEEECBCCBCSSSSEEEEECCCTTCCS
T ss_pred             -CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCcccccCCcEEEEecCCcccCE
Confidence             32211  1          0                   011346799999999885432    3567999999999999


Q ss_pred             eEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCe
Q psy15667        131 IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR  210 (286)
Q Consensus       131 ~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~  210 (286)
                      .|+|.|.|..|... ..+.|.|..+|.+...+       ....|.|.+.|.|.|.+.|.+.......             
T Consensus       392 ~YtC~A~N~~g~~~-~~~~L~V~~~P~i~~~~-------~~~~l~C~a~g~P~p~i~W~~~~~~~~~-------------  450 (527)
T 3qs9_E          392 EYIFHAENDDAQFT-KMFTLNIRRKPQVLAEA-------SASQASCFSDGYPLPSWTWKKCSDKSPN-------------  450 (527)
T ss_dssp             CEEEEEEETTEEEE-EEEEEC--CCCEEEECC-------CCE---EEEECSSCCEEEEECCC------------------
T ss_pred             EEEEEEEeCCCcEE-EEEEEEEecCCeEEEeC-------CCCEEEEEEEEEcCCeEEEEECCCCcCC-------------
Confidence            99999999998764 46788887776543332       1235677777777777777653221110             


Q ss_pred             EEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        211 TRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       211 ~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                          |.    .....-.|.......         ........+.|.-...+|+|.|+|.|.|.+|....++.|.|
T Consensus       451 ----~~----~~~~~~~~~~~~~~~---------~~~~~~~~s~L~i~~~~d~G~Y~C~A~N~~G~~~~~~~L~V  508 (527)
T 3qs9_E          451 ----CT----EEITEGVWNRKANRK---------VFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS  508 (527)
T ss_dssp             ----CC----CCCCCCEEEC------------------CEEEEECCCCCSSCSCEEEEEEECSSCEEEEEEEC--
T ss_pred             ----Cc----cccccccceeccccc---------cCCceEEEEEEEEEEcCCCEEEEEEEEeCCCCceeEEEEec
Confidence                00    000000111100000         00011112233333467999999999999999999998876

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=1.3e-28  Score=205.57  Aligned_cols=230  Identities=18%  Similarity=0.265  Sum_probs=144.3

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|.....+.++.+|++++|.|.+.|.    +.|++++..+.  .++..    ...+.....|.|.+++.+|+|.|+|.|
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~--~~~~~----~~~~~~~~~L~i~~~~~~D~G~Y~C~a   70 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQEPP--QEMAK----AQDGTFSSVLTLTNLTGLDTGEYFCTH   70 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBCCS--EEEEE----CTTSCEEEEEEECSCCGGGCEEEEEEC
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCCcc--cceec----cCCCceeEEEEEccCChhhCEEEEEEE
Confidence            667777778899999999999999875    99999998873  22221    112222346999999999999999999


Q ss_pred             EcCCEE-------EEEec------C------------------------CCCCeeEEEeeC--CccCcCCC-CcceEEEc
Q psy15667         83 ENRAGT-------CEITP------Y------------------------DSGPYLIAWFKD--GRQIPGRT-SSTSLVIN  122 (286)
Q Consensus        83 ~n~~g~-------~~~~~------~------------------------~~~~~~~~W~~~--g~~l~~~~-~~~~l~i~  122 (286)
                      .|..|.       ..+..      +                        ..+.+.+.|+++  +..+.... ....+.  
T Consensus        71 ~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~~--  148 (289)
T 3mjg_X           71 NDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVTDPQLVVTLHEKKGDVALPVPYDHQRGFS--  148 (289)
T ss_dssp             CC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBSCTTSCEEEEESSCCSCCCCCEETTTEEE--
T ss_pred             cccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcCCCCceEEEEeCCCCCccceeecCCcCee--
Confidence            987654       11110      0                        012345777775  44443221 111222  


Q ss_pred             cCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC--CCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccc
Q psy15667        123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGG--LPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFA  199 (286)
Q Consensus       123 ~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~--~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~  199 (286)
                        ..+|+|.|+|.|.|..+...+....|.+..  .|.+... ....+                                 
T Consensus       149 --~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v---------------------------------  193 (289)
T 3mjg_X          149 --GIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVV---------------------------------  193 (289)
T ss_dssp             --ECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEE---------------------------------
T ss_pred             --eeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCccee---------------------------------
Confidence              367999999999987765544445555543  2222111 11233                                 


Q ss_pred             cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec----CCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       200 ~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                            .+|+.+.|.|.+. |.|.+.+.|++++..............    ......|.|.++..+|+|.|+|.|.|.+|
T Consensus       194 ------~~G~~v~L~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G  266 (289)
T 3mjg_X          194 ------RQGENITLMCIVI-GNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVN  266 (289)
T ss_dssp             ------ETTSCEEEEEEEE-SCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTT
T ss_pred             ------EcCCCEEEEEEEC-CCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCC
Confidence                  3455555555543 456666777766654322111111110    11356899999999999999999999999


Q ss_pred             ceeeEEEEEEC
Q psy15667        276 QARYSSKLQVK  286 (286)
Q Consensus       276 ~~~~~~~L~V~  286 (286)
                      ....++.|.|.
T Consensus       267 ~~~~~~~l~v~  277 (289)
T 3mjg_X          267 DHQDEKAINIT  277 (289)
T ss_dssp             TEEEEEEEEEE
T ss_pred             CceeEEEEEEE
Confidence            99999999873

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.97  E-value=3.4e-32  Score=256.19  Aligned_cols=260  Identities=23%  Similarity=0.401  Sum_probs=0.0

Q ss_pred             ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      ....+.+|++++|.|.+.|.|.+.+.|++||..+....++.        +  ...|.|.+++.+|+|.|+|.|.|..|..
T Consensus       338 ~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~--------~--~~~L~i~~v~~~d~G~Y~C~a~n~~g~~  407 (772)
T 3v2a_R          338 SLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIK--------A--GHVLTIMEVSERDTGNYTVILTNPISKE  407 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEc--------c--ceeEEEecCChhcCceEEEEEEECCcCe
Confidence            35578999999999999999999999999999886532221        1  1248899999999999999999987632


Q ss_pred             E------Ee----c--------------------------CCCCCee-EEEeeCCcc-----------------------
Q psy15667         90 E------IT----P--------------------------YDSGPYL-IAWFKDGRQ-----------------------  109 (286)
Q Consensus        90 ~------~~----~--------------------------~~~~~~~-~~W~~~g~~-----------------------  109 (286)
                      .      +.    |                          ...+++. +.|++++..                       
T Consensus       408 ~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  487 (772)
T 3v2a_R          408 KQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTNPYPCEEWRS  487 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCccccccccccccccCcCccccccc
Confidence            1      00    0                          0112343 999997321                       


Q ss_pred             ---------CcC---C--------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecC
Q psy15667        110 ---------IPG---R--------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDG  169 (286)
Q Consensus       110 ---------l~~---~--------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g  169 (286)
                               +..   +        .....|.|.++  +|+|.|+|.|.|..|.. ...+.|.|...|.+...+...+.+|
T Consensus       488 ~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i~~~p~~~~~~G  564 (772)
T 3v2a_R          488 VEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRG-ERVISFHVTRGPEITLQPDMQPTEQ  564 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEcccccc-ceeEEEEEECCceeeccCCcccccC
Confidence                     110   0        01246777766  79999999999998865 3467788877776666665667899


Q ss_pred             CCEEEEeeEeeecCCeEEEEEcCCcc---------------------------------------cc----------ccc
Q psy15667        170 EGLSIKCPVAGYPIEEVHWEKVPPKI---------------------------------------ES----------FAF  200 (286)
Q Consensus       170 ~~~~l~c~~~~~p~~~v~w~~~~~~~---------------------------------------~~----------~~~  200 (286)
                      +.+.|.|.+.+.|.+.+.|.+....+                                       ..          +..
T Consensus       565 ~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a  644 (772)
T 3v2a_R          565 ESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTNDILIMELKNASLQDQGDYVCLA  644 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CceEEEEeccCCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCCceEEEEECCCCccCCcEEEEEE
Confidence            99999999999999999998742110                                       00          000


Q ss_pred             -----------------------------ccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCee
Q psy15667        201 -----------------------------PFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS  251 (286)
Q Consensus       201 -----------------------------~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~  251 (286)
                                                   ....+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+..   ...
T Consensus       645 ~n~~~~~~~s~~~~l~v~~~~~P~~~~~~~~~~v~~g~~~~l~C~~~-g~P~p~v~W~k~g~~l~~~~~~~~~~---~~~  720 (772)
T 3v2a_R          645 QDRKTKKRHCVVRQLTVLERVAPTITGNLENQTTSIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKD---GNR  720 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EeCCCCeEEEEEEeecccccCCCEeecCCCceEEeCCCCEEEEEEeC-ccCCCeEEEEECCeECcCCCCeEEcC---CCc
Confidence                                         012256799999999985 78899999999999887655443322   246


Q ss_pred             eEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|.++..+|+|.|+|.|.|.+|....++.|.|+
T Consensus       721 ~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  755 (772)
T 3v2a_R          721 NLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE  755 (772)
T ss_dssp             -----------------------------------
T ss_pred             EEEECcCCHHHCEEEEEEEEeCCcceeEEEEEEEE
Confidence            89999999999999999999999999999999874

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.96  E-value=3.6e-29  Score=211.88  Aligned_cols=224  Identities=17%  Similarity=0.205  Sum_probs=144.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+. .++.+|++++|.|.+.+. .+.+.|+|||..+......      ....   ..|.|.+++.+|+|.|+|.
T Consensus        24 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~~~~------~~~~---~~L~I~~v~~~D~G~Y~C~   92 (316)
T 3vh8_G           24 KPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPIFHG------RIFQ---ESFNMSPVTTAHAGNYTCR   92 (316)
T ss_dssp             CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCHHHH------CCBS---SCEEECSCCGGGCEEEEEE
T ss_pred             CCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCccceeecC------Ccce---EEEEECCCCcccCeEEEEE
Confidence            788887776 678899999999999988 6789999999876432110      0011   2488999999999999999


Q ss_pred             EEcCCE-----------EEEEe-----------c---------------CCCCCeeEEEeeCCccCcCC---------CC
Q psy15667         82 AENRAG-----------TCEIT-----------P---------------YDSGPYLIAWFKDGRQIPGR---------TS  115 (286)
Q Consensus        82 a~n~~g-----------~~~~~-----------~---------------~~~~~~~~~W~~~g~~l~~~---------~~  115 (286)
                      |.|..+           ...+.           +               ...++..+.|+|+|..+...         ..
T Consensus        93 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~~~  172 (316)
T 3vh8_G           93 GSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGPLVKSGERVILQCWSDIMFEHFFLHKEGISKDPSRLVGQIHDGVS  172 (316)
T ss_dssp             EBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEEESSCCSEEEEEETTCCSCCEEEECEEETTEE
T ss_pred             EEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCCccCCCCeEEEEEcCCCCCcEEEEEECCCccccceeeeeecCCCc
Confidence            875211           11110           0               01234578999999877421         13


Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCccee----eeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVA----QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV  191 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~----~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~  191 (286)
                      ...|.|.++..+|+|.|+|.|.|..|...    +....|.|...+                         +.|.+.-.  
T Consensus       173 ~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~-------------------------~~p~i~~~--  225 (316)
T 3vh8_G          173 KANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPY-------------------------EKPSLSAQ--  225 (316)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSS-------------------------CCCEEEEE--
T ss_pred             eEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCC-------------------------CCCeEEeC--
Confidence            46799999999999999999999876421    223444443211                         01111100  


Q ss_pred             CCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       192 ~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                               +...+.+|+.+.|.|.+.  .|.+.+.|+|+|..+.................|.|.+++  |+|.|+|.|.
T Consensus       226 ---------~~~~v~~G~~v~L~C~~~--~~~~~~~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~--D~G~Y~C~a~  292 (316)
T 3vh8_G          226 ---------PGPKVQAGESVTLSCSSR--SSYDMYHLSREGGAHERRLPAVRKVNRTFQADFPLGPAT--HGGTYRCFGS  292 (316)
T ss_dssp             ---------SCSCCCTTSCCEEEEEES--SCCSEEEEEETTSSCCEEEECEECTTSCEEEEEECC-------CEEEEEEE
T ss_pred             ---------CCCeecCCCcEEEEEECC--CCCcEEEEEECCCcCCCceeceeccCCceeEEEEcCCcC--CCEEEEEEee
Confidence                     112467888889999875  467899999999876432111111111223689999999  9999999999


Q ss_pred             ecccc
Q psy15667        272 NTAAQ  276 (286)
Q Consensus       272 N~~g~  276 (286)
                      |..+.
T Consensus       293 n~~~~  297 (316)
T 3vh8_G          293 FRHSP  297 (316)
T ss_dssp             BTTBT
T ss_pred             cCCCc
Confidence            97663

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.96  E-value=8e-28  Score=198.58  Aligned_cols=218  Identities=20%  Similarity=0.258  Sum_probs=145.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC--eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE-
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE-   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~-   77 (286)
                      +|.+..   ...+.+|+.++|.|.+.| .|.|  .+.|+|||..+..  .+.      ..++......+..++.+|+|. 
T Consensus         6 ~p~~~~---~~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~~~l~~--~~~------~~~~~~~~~~~~~~~~~d~g~g   74 (265)
T 2oz4_A            6 PPQLVS---PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNP--TVT------YGNDSFSAKASVSVTAEDEGTQ   74 (265)
T ss_dssp             CCEEEC---CSEEETTEEEEEEEEEESCSCGGGCEEEEEETTEECCC--EEE------ECSSEEEEEEEEEECGGGCEEE
T ss_pred             CCcccc---CceEecCCCEEEEEEccCCCCCcceEEEEEeCCEECCc--eEe------eCCCeEEEEeecccccccCCcc
Confidence            455543   357899999999999999 8877  9999999998864  221      122222112223447788885 


Q ss_pred             -EEEEEEcCCEEEEE----ec-------------------------CCCCCeeEEEeeCCccCcCCCCcceEEEccCCCC
Q psy15667         78 -YACVAENRAGTCEI----TP-------------------------YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRE  127 (286)
Q Consensus        78 -Y~C~a~n~~g~~~~----~~-------------------------~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~  127 (286)
                       |+|.|.|..|....    ..                         ...+++.++|  ||..+........|.|..+..+
T Consensus        75 ~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~v~~G~~v~l~C~~~p~~~i~W--~g~~~~~~~~~~~l~i~~~~~~  152 (265)
T 2oz4_A           75 RLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTL--NGVPAQPLGPRAQLLLKATPED  152 (265)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEEEECCTTSEEEE--SSCSSSCCSSEECCEEECCGGG
T ss_pred             eEEEEEecCCCCcEEEEEEEEeCCCCceeecCCceecCCCcEEEEEEccCCCEEEE--CCEEccCCCCcEEEEEcccccc
Confidence             99999998775321    00                         0114568999  8888865555677889999999


Q ss_pred             CCeeEEEEEEcC-Ccceee--eeeEEEEcCCCceecC--C-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccc
Q psy15667        128 DRGIYQCIARRS-DGDVAQ--GSAELQLGGLPYVRLI--P-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFP  201 (286)
Q Consensus       128 d~G~Y~C~a~~~-~g~~~~--~~~~l~v~~~~~~~~~--~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~  201 (286)
                      |+|.|+|.|.|. .|....  ..+.|.|...|.+...  + ...+.+|+.+.|.|.+.                      
T Consensus       153 ~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~----------------------  210 (265)
T 2oz4_A          153 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAW----------------------  210 (265)
T ss_dssp             TTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCE----------------------
T ss_pred             CCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECc----------------------
Confidence            999999999754 355422  3456666544433221  1 23444455555555444                      


Q ss_pred             cCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       202 ~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                                        |.|.|.+.|+|+|..+...            +.+.  .+..+|+|.|+|.|.|..|....++
T Consensus       211 ------------------g~P~p~i~W~~~~~~~~~~------------g~~~--~v~~~d~G~Y~C~a~N~~G~~~~~~  258 (265)
T 2oz4_A          211 ------------------GNPLPELKCLKDGTFPLPI------------GESV--TVTRDLEGTYLCRARSTQGEVTREV  258 (265)
T ss_dssp             ------------------EESCCEEEEEETTTEECCT------------TSCE--ECCGGGCEEEEEEEEETTEEEEEEE
T ss_pred             ------------------cCCCCeEEEEECCcccCCC------------CcEE--EeehhhCeEEEEEEECCCCcEEEEE
Confidence                              4556677788887622111            1222  4788999999999999999999999


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|.|+
T Consensus       259 ~l~V~  263 (265)
T 2oz4_A          259 TVNVL  263 (265)
T ss_dssp             EEEEE
T ss_pred             EEEEe
Confidence            99874

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.96  E-value=3.3e-27  Score=198.43  Aligned_cols=235  Identities=23%  Similarity=0.323  Sum_probs=165.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.+.+.|++++..+..+ .++.+...   .+ ....|.|.+++.+|+|.|+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~---~~-~~~~L~i~~v~~~d~G~Y~   78 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEF---KG-GYHQLIIASVTDDDATVYQ   78 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEE---TT-TEEEEEESSCCGGGCSEEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEEC---CC-CEEEEEEccCChhhCeEEE
Confidence            4899999999999999999999999999999999999999998754 34433211   12 2246999999999999999


Q ss_pred             EEEEcCCEEEEEe--------c----------------------------CCCCCeeEEEeeCCccCcCCC--------C
Q psy15667         80 CVAENRAGTCEIT--------P----------------------------YDSGPYLIAWFKDGRQIPGRT--------S  115 (286)
Q Consensus        80 C~a~n~~g~~~~~--------~----------------------------~~~~~~~~~W~~~g~~l~~~~--------~  115 (286)
                      |.|.|..|.....        +                            .+.+++.+.|++++..+....        .
T Consensus        79 C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~~~~  158 (305)
T 2nzi_A           79 VRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIVTRS  158 (305)
T ss_dssp             EEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEESSSBCCSSSSCEEEECSS
T ss_pred             EEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEECCEECCCCCcEEEEEcCC
Confidence            9999988753211        0                            011245799999998875421        2


Q ss_pred             cceEEEcc-CCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        116 STSLVINP-VGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 ~~~l~i~~-v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ...|.|.+ +..+|+|.|+|.|.|..|.. ...+.|.|...|............+..+.|.|...               
T Consensus       159 ~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p---------------  222 (305)
T 2nzi_A          159 FTSLVFPNGVERKDAGFYVVCAKNRFGID-QKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEP---------------  222 (305)
T ss_dssp             EEEEEETTCCCSTTCEEEEEEEEETTEEE-EEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECC---------------
T ss_pred             ceEEEEecCCccCccEEEEEEEEeCCCce-eeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCC---------------
Confidence            35799999 99999999999999999875 44677777655432111111112344455544321               


Q ss_pred             ccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                                ...|....+.|.+. ..+.+...|.+.+...              ...|.|.++...|.|.|+|.|.|.+
T Consensus       223 ----------~~~g~~~i~~y~v~-~~~~~~~~w~~~~~~~--------------~~~~~i~~l~~~~~y~~~~~A~N~~  277 (305)
T 2nzi_A          223 ----------ASDGGSKITNYIVE-KCATTAERWLRVGQAR--------------ETRYTVINLFGKTSYQFRVIAENKF  277 (305)
T ss_dssp             ----------SCCSBSCEEEEEEE-EEETTSCCEEEEEEES--------------SSEEEECSCCSSCEEEEEEEEEETT
T ss_pred             ----------ccCCCCceeEEEEE-EecCCCCccEECcccc--------------CceEEecCCCCCCeEEEEEEEEeCC
Confidence                      12344445566553 2344556787665432              3468899999999999999999999


Q ss_pred             cceeeE
Q psy15667        275 AQARYS  280 (286)
Q Consensus       275 g~~~~~  280 (286)
                      |....+
T Consensus       278 G~~~~S  283 (305)
T 2nzi_A          278 GLSKPS  283 (305)
T ss_dssp             EECCCC
T ss_pred             cccCCc
Confidence            976544

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=1.8e-28  Score=208.46  Aligned_cols=235  Identities=17%  Similarity=0.271  Sum_probs=150.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC----CCCeeEEeeCC--EE-------------c--CCCCeeEeceEEecccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN----PTPDIGWTLDG--FE-------------L--PTNNRFVIGQFVSGHGD   60 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~----p~p~v~W~~~~--~~-------------l--~~~~~~~~~~~~~~~~~   60 (286)
                      |+.+...+.++.+.+|++++|.|.+.+.    |.+.+.|++++  ..             +  ....|+.+..  ...+ 
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~--~~~~-   90 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLR--PSFT-   90 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESS--CSSS-
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecc--cCCC-
Confidence            3445556666789999999999999886    55679999954  11             1  1223433210  0011 


Q ss_pred             eeEEEEEcccccCCCeEEEEE-EEcCCEEEE----Ee---------------------------------cCCCCCeeEE
Q psy15667         61 VISHVNISHVTVEDGGEYACV-AENRAGTCE----IT---------------------------------PYDSGPYLIA  102 (286)
Q Consensus        61 ~~~~l~I~~~~~~D~G~Y~C~-a~n~~g~~~----~~---------------------------------~~~~~~~~~~  102 (286)
                       ...|.|.+++.+|+|.|+|. +.+..|...    +.                                 ....+++.+.
T Consensus        91 -~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~  169 (331)
T 3u83_A           91 -DGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVS  169 (331)
T ss_dssp             -BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEE
T ss_pred             -CceEEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEE
Confidence             12489999999999999998 544444321    00                                 0011345799


Q ss_pred             EeeCCccCc------CCC----CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCE
Q psy15667        103 WFKDGRQIP------GRT----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGL  172 (286)
Q Consensus       103 W~~~g~~l~------~~~----~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~  172 (286)
                      |++++....      ...    ....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...|.+...+          
T Consensus       170 W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~-~~~~~l~V~~~P~~~~~~----------  238 (331)
T 3u83_A          170 WETRLKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRF-KESLTLNVQYEPEVTIEG----------  238 (331)
T ss_dssp             EEESSCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEE-EEEEECCEEEEEEEEEEC----------
T ss_pred             EEcCCCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcc-eeeEEEEEecCCeEEEec----------
Confidence            999633221      011    12458888899999999999999988764 345666654333221110          


Q ss_pred             EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCe-EEEEeCCeeCCCCCCceeeecCCCee
Q psy15667        173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSS  251 (286)
Q Consensus       173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~-~~W~~~g~~~~~~~~~~~~~~~~~~~  251 (286)
                                                 .....+.+|+.+.|.|.+. |.|.+. +.|+|++..+....  .+     .+.
T Consensus       239 ---------------------------~~~~~~~~g~~~~l~C~~~-g~p~p~~i~W~~~~~~~~~~~--~~-----~~~  283 (331)
T 3u83_A          239 ---------------------------FDGNWYLQRMDVKLTCKAD-ANPPATEYHWTTLNGSLPKGV--EA-----QNR  283 (331)
T ss_dssp             ---------------------------CCSCCBTTCCCEEEEEEEE-EESCCCEEEEEETTBSCCTTE--EE-----ETT
T ss_pred             ---------------------------CCCceEeCCCeEEEEEeCc-CCCCCCEEEEEECCCcccccc--ee-----cCc
Confidence                                       0112355677777777663 556666 89999988775431  11     135


Q ss_pred             eEEEc-ccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        252 LLSIN-SVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       252 ~L~i~-~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|. ++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       284 ~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  319 (331)
T 3u83_A          284 TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNIT  319 (331)
T ss_dssp             EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCB
T ss_pred             EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEe
Confidence            79999 999999999999999999999999998874

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.96  E-value=1.1e-27  Score=212.30  Aligned_cols=250  Identities=17%  Similarity=0.256  Sum_probs=162.9

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCee-----EEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDI-----GWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v-----~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      |.+.+.++++.+|++++|.|.+.| |.|.+     .|+|++..+.. .++             ..|.|.+++. |+| |+
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~~~~-~~~-------------~~l~i~~v~~-d~g-Y~   64 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELLLPG-NNR-------------KVYELSNVQE-DSQ-PM   64 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECCSST-TTE-------------EEEEEEEECS-CBC-CE
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceEecC-CCc-------------eEEEEEeccc-CCe-eE
Confidence            567888899999999999999999 99998     89998765432 221             2478999987 999 99


Q ss_pred             EEEEcCCEEEE----Ee----------------------------cCCCCCe---eEEEeeCCccCcCC-----CCcceE
Q psy15667         80 CVAENRAGTCE----IT----------------------------PYDSGPY---LIAWFKDGRQIPGR-----TSSTSL  119 (286)
Q Consensus        80 C~a~n~~g~~~----~~----------------------------~~~~~~~---~~~W~~~g~~l~~~-----~~~~~l  119 (286)
                      |.|.+..+...    +.                            ....+++   .+.|+|||..+...     .....|
T Consensus        65 C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g~~l~~~~~~~~~~~~~L  144 (450)
T 1z7z_I           65 CYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTT  144 (450)
T ss_dssp             EEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECCTTTEEEEE
T ss_pred             EEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCCEEeecccccccccceEE
Confidence            99987655322    10                            0112344   89999999887431     223589


Q ss_pred             EEccCCCCCCeeEEEEEEcCCccee-------eeeeEEEEcCCCce--ecCCceEEecCCCEEEEeeEeee-c--CCeEE
Q psy15667        120 VINPVGREDRGIYQCIARRSDGDVA-------QGSAELQLGGLPYV--RLIPKVTAIDGEGLSIKCPVAGY-P--IEEVH  187 (286)
Q Consensus       120 ~i~~v~~~d~G~Y~C~a~~~~g~~~-------~~~~~l~v~~~~~~--~~~~~~~~~~g~~~~l~c~~~~~-p--~~~v~  187 (286)
                      .|.++..+|+|.|+|.|.|..|...       .....|.+...+..  .......+.+|+.+.|.|.+.+. |  .+.+.
T Consensus       145 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~  224 (450)
T 1z7z_I          145 TVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVH  224 (450)
T ss_dssp             EEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTTGGGCEEE
T ss_pred             EEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCCCCceEEE
Confidence            9999999999999999999866421       12334455433111  01111567789999999999998 7  68899


Q ss_pred             EEEcCCccc----------------------cc-------------------------------ccccCCCCCCCeEEEE
Q psy15667        188 WEKVPPKIE----------------------SF-------------------------------AFPFDGLPEGARTRVI  214 (286)
Q Consensus       188 w~~~~~~~~----------------------~~-------------------------------~~~~~~~~~g~~~~l~  214 (286)
                      |.+....+.                      ..                               ......+.+|+.+.|.
T Consensus       225 W~~~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~~~~v~~G~~v~l~  304 (450)
T 1z7z_I          225 LALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVK  304 (450)
T ss_dssp             EEETTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEESCSEEETTCEEEEE
T ss_pred             EeCCCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecCCeeEeCCCcEEEE
Confidence            986321100                      00                               0001235689999999


Q ss_pred             EeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-c---eeeEEEEEE
Q psy15667        215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-Q---ARYSSKLQV  285 (286)
Q Consensus       215 c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~---~~~~~~L~V  285 (286)
                      |.+.   |.+.+.|  +|..+...         .....|.|..+..+|+|.|+|.|.|..| .   ...++.|.|
T Consensus       305 C~~~---p~p~i~W--~g~~~~~~---------~~~~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V  365 (450)
T 1z7z_I          305 CEAH---PRAKVTL--NGVPAQPL---------GPRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV  365 (450)
T ss_dssp             EEC------------------------------CCCCCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEE
T ss_pred             EecC---CCCEeEE--CCEEcCCC---------CceEEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEE
Confidence            9985   8899999  77766211         1134789999999999999999998765 3   335566655

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=1.4e-26  Score=211.70  Aligned_cols=267  Identities=18%  Similarity=0.214  Sum_probs=178.7

Q ss_pred             ccccccccCCCcEEEEEEeecCCCC---eeEEeeCCEEcC--------------CCCeeEeceEEecccceeEEEEEccc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTP---DIGWTLDGFELP--------------TNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l~--------------~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .+.++.+.+|++++|.|.+.+.|.+   .+.|+|++..+.              ...|+.+..   ...+....|.|.++
T Consensus         6 ~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~---~~~~g~~~L~I~~v   82 (585)
T 2ocw_A            6 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN---FPENGTFVVNIAQL   82 (585)
T ss_pred             CcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEe---cCCCCEEEEEECCC
Confidence            4667889999999999999998755   899999985431              112332211   00122246999999


Q ss_pred             ccCCCeEEEEEEEcCCEEEE----Ee---------------------------cCC-CCCeeEEEeeCCccCc-------
Q psy15667         71 TVEDGGEYACVAENRAGTCE----IT---------------------------PYD-SGPYLIAWFKDGRQIP-------  111 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~----~~---------------------------~~~-~~~~~~~W~~~g~~l~-------  111 (286)
                      +.+|+|.|+|.|.|..+...    +.                           ... .+++.+.|+|++....       
T Consensus        83 ~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           83 SQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             CcccCEEEEEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            99999999999988765321    10                           001 1235699999876421       


Q ss_pred             --------CCC---------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEE
Q psy15667        112 --------GRT---------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSI  174 (286)
Q Consensus       112 --------~~~---------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l  174 (286)
                              .+.         ....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...+    ...+.+.+|+.+.|
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~~~----p~~~~~~~G~~v~l  237 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSN-KKNADLQVLKPE----PELVYEDLRGSVTF  237 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccc-cceEEEEEccCC----CceeEEcCCCcEEE
Confidence                    110         01269999999999999999999988865 456778876543    12345678999999


Q ss_pred             EeeEeeecC---CeEEEE-EcCC-------------------------------ccc--c----------c--------c
Q psy15667        175 KCPVAGYPI---EEVHWE-KVPP-------------------------------KIE--S----------F--------A  199 (286)
Q Consensus       175 ~c~~~~~p~---~~v~w~-~~~~-------------------------------~~~--~----------~--------~  199 (286)
                      .|.+ +.|.   +.+.|. +...                               .+.  .          |        .
T Consensus       238 ~C~~-~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~  316 (585)
T 2ocw_A          238 HCAL-GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQ  316 (585)
T ss_pred             EEEc-CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCcc
Confidence            9997 4444   567785 3220                               000  0          0        0


Q ss_pred             -----c----------------ccCCCCCCCeEEEEEeeecCCCCCeE----EEEe--CCe--eCCC---------CCCc
Q psy15667        200 -----F----------------PFDGLPEGARTRVICGVTHGDPPLTI----RWLK--DGK--PLSP---------RFPV  241 (286)
Q Consensus       200 -----~----------------~~~~~~~g~~~~l~c~~~~~~p~~~~----~W~~--~g~--~~~~---------~~~~  241 (286)
                           .                ....+.+|+.+.|.|.+. +.|.+.+    .|+|  +|.  .+..         ..++
T Consensus       317 ~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~-~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~  395 (585)
T 2ocw_A          317 EGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYN-RKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRL  395 (585)
T ss_pred             ccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecC-CCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCE
Confidence                 0                011245799999999985 7777776    7999  887  4422         1222


Q ss_pred             eeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        242 NVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+... ......|.|.++..+|+|.|+|.| |..|....++.|.|
T Consensus       396 ~~~~~~~~g~~~L~I~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V  439 (585)
T 2ocw_A          396 SLLEEPGNGTFTVILNQLTSRDAGFYWCLT-NGDTLWRTTVEIKI  439 (585)
T ss_pred             EEeccCCCcEEEEEECCCChhhCEEEEEcc-cCCCccceeEEEEE
Confidence            22211 111234999999999999999999 99998888888877

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.95  E-value=1.8e-27  Score=205.31  Aligned_cols=194  Identities=14%  Similarity=0.193  Sum_probs=143.9

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      ...+.+|++++|.|.+.++|.|.+.|++++..+..            ..   ..|.|.+++.+|+|.|+|.|.|..+...
T Consensus       105 ~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~------------~~---~~L~i~~v~~~d~G~Y~C~a~~~~~~~~  169 (363)
T 1wio_A          105 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------GG---KTLSVSQLELQDSGTWTCTVLQNQKKVE  169 (363)
T ss_dssp             CSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEE------------ES---SEEEECSBCGGGCEECEEEEEETTEEEE
T ss_pred             ceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccc------------cc---eEEEEeeCChhcCCEEEEEEecCCCeEE
Confidence            45788999999999999999999999999754310            11   2488999999999999999998776543


Q ss_pred             Ee--------------------------c--CC-----CCCeeEEEeeCCccCcCC-------C----------------
Q psy15667         91 IT--------------------------P--YD-----SGPYLIAWFKDGRQIPGR-------T----------------  114 (286)
Q Consensus        91 ~~--------------------------~--~~-----~~~~~~~W~~~g~~l~~~-------~----------------  114 (286)
                      ..                          .  ..     .+.+.+.|+++|..+...       .                
T Consensus       170 ~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  249 (363)
T 1wio_A          170 FKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNKEVSVKRVTQDPKLQM  249 (363)
T ss_dssp             ECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECSSCEEEEEEECSSCCBC
T ss_pred             EEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecCCeeeccccccchhhhc
Confidence            21                          0  01     124689999999876541       0                


Q ss_pred             -C--cceEEEccCCCCCCeeEEEEEEcC--CcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEE
Q psy15667        115 -S--STSLVINPVGREDRGIYQCIARRS--DGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWE  189 (286)
Q Consensus       115 -~--~~~l~i~~v~~~d~G~Y~C~a~~~--~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~  189 (286)
                       .  ...|.|.++..+|+|.|+|.|.|.  .|.. ...+.|.|.            ...|+.+.|.|.+.+         
T Consensus       250 ~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~-~~~~~l~V~------------~v~g~~~~l~C~~~g---------  307 (363)
T 1wio_A          250 GKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKL-HQEVNLVVM------------RATQLQKNLTCEVWG---------  307 (363)
T ss_dssp             CSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCE-EEEEEEEEE------------EECCCSSSEEEEEES---------
T ss_pred             ccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeE-EEEEeEEEE------------EecCCCeeEEEEEcc---------
Confidence             1  348999999999999999999999  8864 445666653            112566666665544         


Q ss_pred             EcCCcccccccccCCCCCCCeEEEEEeeecCCCCCe--EEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEE
Q psy15667        190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYT  267 (286)
Q Consensus       190 ~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~--~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  267 (286)
                                                     .|+|.  +.|+|+|..+..            +..|.|.++..+|+|.|+
T Consensus       308 -------------------------------~p~p~~~i~W~~~~~~~~~------------~~~l~i~~v~~~d~G~Y~  344 (363)
T 1wio_A          308 -------------------------------PTSPKLMLSLKLENKEAKV------------SKREKAVWVLNPEAGMWQ  344 (363)
T ss_dssp             -------------------------------SCCTTCCEEEECSSSSCSE------------EESSSEEEESSCCSEEEE
T ss_pred             -------------------------------ccCCCccEEEEeCCCceee------------eeeeeeeeeccccceeEE
Confidence                                           34444  889999876642            345778999999999999


Q ss_pred             EEEEecccceeeEEEEEE
Q psy15667        268 CVASNTAAQARYSSKLQV  285 (286)
Q Consensus       268 C~a~N~~g~~~~~~~L~V  285 (286)
                      |.|.|. |....++.|.|
T Consensus       345 C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          345 CLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             EEECSS-SSCCEEEEEEE
T ss_pred             EEEecC-CeEEEecceEe
Confidence            999965 66677777776

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.95  E-value=8.5e-29  Score=233.03  Aligned_cols=274  Identities=20%  Similarity=0.279  Sum_probs=55.7

Q ss_pred             CeeEecccc-ccccCCCcEEEEEEeec--CCCCeeEEeeCCEEcCCCCeeEeceEEe---cccceeEEEEEcccccCCCe
Q psy15667          3 PILTYSFIE-QTLQPGPAVSLKCIASG--NPTPDIGWTLDGFELPTNNRFVIGQFVS---GHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         3 p~~~~~~~~-~~~~~G~~~~l~C~~~g--~p~p~v~W~~~~~~l~~~~~~~~~~~~~---~~~~~~~~l~I~~~~~~D~G   76 (286)
                      |.+...+.. ..+.+|++++|.|.+.+  +|.+.+.|++++..+.............   ........|.|.+++.+|+|
T Consensus       224 ~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G  303 (772)
T 3v2a_R          224 YDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQG  303 (772)
T ss_dssp             EEEEEECCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------CEEEEC-----CCCEEEEEEEEESSCCSTTCS
T ss_pred             ceeeeCCCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCceeeeccccccccccceEEEEEEEECcCCcCCCe
Confidence            344444544 58999999999999998  5567899999998765433221100000   11112346999999999999


Q ss_pred             EEEEEEEcCCEEEE----Ee----c--------------------------CCCCCeeEEEeeCCccCcCCC---CcceE
Q psy15667         77 EYACVAENRAGTCE----IT----P--------------------------YDSGPYLIAWFKDGRQIPGRT---SSTSL  119 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~----~~----~--------------------------~~~~~~~~~W~~~g~~l~~~~---~~~~l  119 (286)
                      .|+|.|.|..+...    +.    |                          ...+++.+.|+|||..+..+.   ....|
T Consensus       304 ~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~L  383 (772)
T 3v2a_R          304 LYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHTIKAGHVL  383 (772)
T ss_dssp             EEEEEEECSSCEEEEEEEEEEECCCC------------------------------------------------------
T ss_pred             EEEEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEECCEeCCCCceEccceeE
Confidence            99999999876432    10    0                          011345789999999886532   23789


Q ss_pred             EEccCCCCCCeeEEEEEEcCCccee-eeeeEEEEcCCCceecC----CceEEecCCCEEEEeeEeeecCCe-EEEEEcCC
Q psy15667        120 VINPVGREDRGIYQCIARRSDGDVA-QGSAELQLGGLPYVRLI----PKVTAIDGEGLSIKCPVAGYPIEE-VHWEKVPP  193 (286)
Q Consensus       120 ~i~~v~~~d~G~Y~C~a~~~~g~~~-~~~~~l~v~~~~~~~~~----~~~~~~~g~~~~l~c~~~~~p~~~-v~w~~~~~  193 (286)
                      .|.++..+|+|.|+|.+.|..|... +..+.|.|..+|.+...    +...+..|+.+.|.|.+.+.|.|. +.|.+...
T Consensus       384 ~i~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~  463 (772)
T 3v2a_R          384 TIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLE  463 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCC
Confidence            9999999999999999999877542 23456666666654322    222467899999999999999997 99987300


Q ss_pred             --------------------------------cc-----------------cc-------------cc------------
Q psy15667        194 --------------------------------KI-----------------ES-------------FA------------  199 (286)
Q Consensus       194 --------------------------------~~-----------------~~-------------~~------------  199 (286)
                                                      .+                 ..             +.            
T Consensus       464 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~~d~G~Y~C~a~N~~g~~~~~~  543 (772)
T 3v2a_R          464 EECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGRGERVI  543 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeecccCeEEEEEEEccccccceeE
Confidence                                            00                 00             00            


Q ss_pred             ------------cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceee-------------------ecCC
Q psy15667        200 ------------FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-------------------DLDS  248 (286)
Q Consensus       200 ------------~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~-------------------~~~~  248 (286)
                                  .+...+.+|+.+.|.|.+. +.|.+.+.|+|+|..+.........                   ....
T Consensus       544 ~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~-~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  622 (772)
T 3v2a_R          544 SFHVTRGPEITLQPDMQPTEQESVSLWCTAD-RSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTLWKLNATMFSNSTN  622 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             EEEEECCceeeccCCcccccCCceEEEEecc-CCCCCCcEEEEcCCcccccccCcccccccccccceeeccceeeecCCC
Confidence                        0012356799999999985 7788999999998765432211110                   0001


Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       623 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  651 (772)
T 3v2a_R          623 DILIMELKNASLQDQGDYVCLAQDRKTKK  651 (772)
T ss_dssp             -----------------------------
T ss_pred             ceEEEEECCCCccCCcEEEEEEEeCCCCe
Confidence            12349999999999999999999976543

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.95  E-value=5.6e-26  Score=178.83  Aligned_cols=186  Identities=23%  Similarity=0.322  Sum_probs=128.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+..+ .++.+..   ..+ ....|.|.+++.+|+|.|+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~---~~~-~~~~L~i~~~~~~d~G~Y~   78 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQE---FKG-GYHQLIIASVTDDDATVYQ   78 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEE---ETT-TEEEEEECSCCGGGCSEEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEE---cCC-CEEEEEECcCCHHhCEEEE
Confidence            4899999999999999999999999999999999999999988753 3443311   111 1235778888888888888


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR  159 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~  159 (286)
                      |.|.|..|....                                                       .+.|.|...|.+.
T Consensus        79 C~~~n~~g~~~~-------------------------------------------------------~~~l~V~~~p~~~  103 (197)
T 2j8h_A           79 VRATNQGGSVSG-------------------------------------------------------TASLEVEVPAKIH  103 (197)
T ss_dssp             EEEEETTEEEEE-------------------------------------------------------EEEEEEEEEEEEC
T ss_pred             EEEEECCCceeE-------------------------------------------------------EEEEEEcCCCcCC
Confidence            887776554321                                                       1122221111110


Q ss_pred             ------cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe
Q psy15667        160 ------LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  233 (286)
Q Consensus       160 ------~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~  233 (286)
                            ......+..|+.+.|.|.+.+                                        .|.+.+.|+|++.
T Consensus       104 ~~~~~~~~~~~~~~~g~~~~l~C~~~g----------------------------------------~p~p~i~W~~~~~  143 (197)
T 2j8h_A          104 LPKTLEGMGAVHALRGEVVSIKIPFSG----------------------------------------KPDPVITWQKGQD  143 (197)
T ss_dssp             CSSCBTTBEEEEEETTCCCEEEEEEEE----------------------------------------ESCCEEEEEESSC
T ss_pred             CCccccccCeEEEeCCCEEEEEEEEEe----------------------------------------cCCCcEEEEECCE
Confidence                  001123345555555555544                                        4556778888888


Q ss_pred             eCCCCCCceeeecCCCeeeEEEcc-cCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        234 PLSPRFPVNVSDLDSFSSLLSINS-VSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .+....++.+... .....|.|.+ +..+|+|.|+|.|.|..|....++.|.|.
T Consensus       144 ~~~~~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          144 LIDNNGHYQVIVT-RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EECSSSSCEEEEC-SSEEEEECTTCCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EeecCCCEEEEEc-CCceEEEEeCCCCcccCEeEEEEEEeCCCcEeEEEEEEEe
Confidence            7765555554432 2356899999 99999999999999999999999999873

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.95  E-value=1e-26  Score=185.11  Aligned_cols=198  Identities=16%  Similarity=0.165  Sum_probs=125.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.|...+ +..+.+|+.+.|.|.+.+ .|.|.|+|+|||++|..+.++.+..   ...+....|.|.+++.+|+|.|+|
T Consensus         3 ~p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng~~l~~~~~~~~~~---~~~~g~~~L~I~~v~~~D~G~Y~C   78 (207)
T 3rbs_A            3 DPFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQDEDEGTYTF   78 (207)
T ss_dssp             ---CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETTEEECSSSSCEEEE---CTTTCEEEEEESCCCGGGCEEEEE
T ss_pred             CCeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECCEECccCCCEEEEE---eCCCCEEEEEECCCChhhCEEEEE
Confidence            57777544 688999999999999874 7999999999999998777765421   111233468899999999999999


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE-----cCC
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL-----GGL  155 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v-----~~~  155 (286)
                      .|.|..........        .  -+..+.                              .. .....+.+     ...
T Consensus        79 ~a~Ng~a~~~~~~~--------~--~~~~~~------------------------------~~-~~~~~~~~~~~~~~~~  117 (207)
T 3rbs_A           79 QLQDGKATNHSTVV--------L--VGDVFK------------------------------KL-QKEAEFQRQEWIRKQG  117 (207)
T ss_dssp             EEEETTEEEEEEEE--------E--CTHHHH------------------------------HH-HHHHHHHHHHHHHHTS
T ss_pred             EEECCCeEEEEEEE--------E--Eccchh------------------------------hh-cccccccccccccCCC
Confidence            98884333221100        0  000000                              00 00000000     001


Q ss_pred             CceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC
Q psy15667        156 PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL  235 (286)
Q Consensus       156 ~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~  235 (286)
                      |.+.......                                       +.+|+.+.|.|.+....|.|.+.|+|+|..+
T Consensus       118 P~~~~~~~~~---------------------------------------v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l  158 (207)
T 3rbs_A          118 PHFVEYLSWE---------------------------------------VTGECNVLLKCKVANIKKETHIVWYKDEREI  158 (207)
T ss_dssp             SEEEEEEEEE---------------------------------------EETTTEEEEEEEEESCCTTCEEEEEETTEEE
T ss_pred             CceEecCCcE---------------------------------------EcCCCcEEEEEEEeCCCCCCEEEEEECCEEC
Confidence            1100000112                                       3356666666665432378899999999988


Q ss_pred             CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       236 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....++..   .....+|.|.++..+|+|.|+|.|.|.+|...+++.|+++
T Consensus       159 ~~~~~~~~---~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~~~  206 (207)
T 3rbs_A          159 SVDEKHDF---KDGICTLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDE  206 (207)
T ss_dssp             CCCCCCCC---SSEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEECCC
T ss_pred             CCCCceEc---CCCEEEEEECCCCcccCEEEEEEEEcCCCEEEEEEEEecC
Confidence            76544321   1224579999999999999999999999999999999764

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.95  E-value=1e-25  Score=179.76  Aligned_cols=183  Identities=27%  Similarity=0.483  Sum_probs=123.2

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC-CCCeeEeceEEecccceeEEEEEccccc-CCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP-TNNRFVIGQFVSGHGDVISHVNISHVTV-EDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~-~~~~~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y   78 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.+.+.|++++..+. ...++.+..    ..+....|.|.+++. +|+|.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~~d~G~Y   80 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLE----QPGGISILRIEPVRAGRDDAPY   80 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEE----ETTTEEEEEESSCCTTTTCSEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEE----cCCCeEEEEEEecCCCCcCceE
Confidence            48999999999999999999999999999999999999999986 344543311    111123466666666 666666


Q ss_pred             EEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC---
Q psy15667         79 ACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL---  155 (286)
Q Consensus        79 ~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~---  155 (286)
                      +|.|.|..|.                                                      .....+.|.|...   
T Consensus        81 ~C~~~n~~g~------------------------------------------------------~~~~~~~l~V~~~~~~  106 (212)
T 2yd1_A           81 ECVAENGVGD------------------------------------------------------AVSADATLTIYEGDKT  106 (212)
T ss_dssp             EEEEECSSSC------------------------------------------------------EEEEEEEEEEECTTCS
T ss_pred             EEEEEeCCCC------------------------------------------------------eEEeeEEEEEecccCC
Confidence            6666664432                                                      1122333333322   


Q ss_pred             ----CceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe
Q psy15667        156 ----PYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK  230 (286)
Q Consensus       156 ----~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~  230 (286)
                          |.+...+ ...                                       +.+|+.+.|.|.+. |.|.+.+.|++
T Consensus       107 ~~~~p~~~~~~~~~~---------------------------------------~~~g~~v~l~C~~~-g~p~p~i~W~~  146 (212)
T 2yd1_A          107 PAGFPVITQGPGTRV---------------------------------------IEVGHTVLMTCKAI-GNPTPNIYWIK  146 (212)
T ss_dssp             CTTCCEEEECCCCEE---------------------------------------EETTCCEEECCEEE-CSSCCEEEEEE
T ss_pred             CCCCCeeEeCCCceE---------------------------------------eecCCeEEEEEEec-cCCCCeEEEEE
Confidence                1111111 122                                       23455555555553 56777889999


Q ss_pred             CCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE-EEEEEC
Q psy15667        231 DGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQVK  286 (286)
Q Consensus       231 ~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~-~~L~V~  286 (286)
                      ++..+.... ++.+.     .+.|.|.++..+|+|.|+|.|.|..|..... +.|.|+
T Consensus       147 ~~~~~~~~~~~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~s~~~~l~V~  199 (212)
T 2yd1_A          147 NQTKVDMSNPRYSLK-----DGFLQIENSREEDQGKYECVAENSMGTEHSKATNLYVK  199 (212)
T ss_dssp             TTEECCTTSTTEEEE-----TTEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEcccCCCeEEcc-----CCeEEEccCChhhCEEEEEEeecCCCceeEEEEEEEEE
Confidence            999886533 22221     3489999999999999999999999988765 788874

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.95  E-value=7.3e-26  Score=177.64  Aligned_cols=184  Identities=23%  Similarity=0.390  Sum_probs=126.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.+.+.|+++|..+....  ++.+..    .++ ...|.|.+++.+|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~----~~~-~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTSTLPGVQISF----SDG-RAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSBCCTTTSTTCEEEE----ETT-EEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEEcccccCCceEEEe----CCC-EEEEEECCCCcccCEEEE
Confidence            7899999999999999999999999999999999999998886543  332211    111 234777777777777777


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CC
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LP  156 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~  156 (286)
                      |.+.|..|....                                                       ...|.|..   +|
T Consensus        80 C~~~n~~~~~~~-------------------------------------------------------~~~l~v~~~~~~p  104 (194)
T 2a38_A           80 LKATNGSGQATS-------------------------------------------------------TAELLVKAETAPP  104 (194)
T ss_dssp             EEEEETTEEEEE-------------------------------------------------------EEEEEEECCCEEE
T ss_pred             EEEEcCCceEeE-------------------------------------------------------EEEEEEccCCCCC
Confidence            777775544321                                                       11222211   01


Q ss_pred             ceec-CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC
Q psy15667        157 YVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL  235 (286)
Q Consensus       157 ~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~  235 (286)
                      .+.. .....                                       +.+|+.+.|.|.+ .+.|.+.+.|+|+|..+
T Consensus       105 ~~~~~~~~~~---------------------------------------~~~g~~~~l~C~~-~g~p~~~v~W~~~~~~~  144 (194)
T 2a38_A          105 NFVQRLQSMT---------------------------------------VRQGSQVRLQVRV-TGIPTPVVKFYRDGAEI  144 (194)
T ss_dssp             EEEECCCCEE---------------------------------------ECTTEEEEEEEEE-EEESCCEEEEEETTEEC
T ss_pred             EEEeCCccEE---------------------------------------EcCCCEEEEEEEE-EEecCCeEEEEECCEEC
Confidence            0100 01122                                       3345555555555 24566778899999988


Q ss_pred             CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        236 SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       236 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       145 ~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  194 (194)
T 2a38_A          145 QSSLDFQISQE-GDLYSLLIAEAYPEDSGTYSVNATNSVGRATSTAELLVQ  194 (194)
T ss_dssp             CCSSSEEEEEE-TTEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCCCcEEEEEc-CCEEEEEECCCChhcCeEEEEEEEeCCCceEEEEEEEEC
Confidence            76655554432 224479999999999999999999999999999999986

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.95  E-value=2.2e-25  Score=193.59  Aligned_cols=232  Identities=23%  Similarity=0.368  Sum_probs=154.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEcCC-----CCeeEeceEEecccceeEEEEEcccccCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFELPT-----NNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l~~-----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +|.|.. +.+.++.+|++++|.|.+.|.|.|.|.|+|+  |..|..     +.++.+..    . .....|.|.+++.+|
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~----~-~~~~~L~i~~v~~~D   74 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG----Q-HGSSSLHIKDVKLSD   74 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEE----C-SSEEEEEEESCCGGG
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEec----c-CCcceEEEcccChhh
Confidence            578886 7788888999999999999999999999999  888864     34554311    1 123469999999999


Q ss_pred             CeEEEEEEEcCCEEEEEe--------c-----------------------CCCCCeeEEEeeCCccCcCCC---------
Q psy15667         75 GGEYACVAENRAGTCEIT--------P-----------------------YDSGPYLIAWFKDGRQIPGRT---------  114 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~~~--------~-----------------------~~~~~~~~~W~~~g~~l~~~~---------  114 (286)
                      +|.|+|.|.|..|.....        |                       .+.+++.+.|+|||..+....         
T Consensus        75 ~G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~~g~~l~~~~~~~~~~~~~  154 (389)
T 2jll_A           75 SGRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLPAKNTTNLKTYST  154 (389)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEETTEESSCTTCTTEEEEEC
T ss_pred             CEEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEECCccCCcccCceEEEecc
Confidence            999999999988753210        0                       011346799999999886432         


Q ss_pred             -CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCC
Q psy15667        115 -SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP  193 (286)
Q Consensus       115 -~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~  193 (286)
                       ....|.|.++..+|+|.|+|.|.|..|... ..+.+.+...|............+..+.|.|....             
T Consensus       155 ~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~-~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~p~-------------  220 (389)
T 2jll_A          155 GRKMILEIAPTSDNDFGRYNCTATNHIGTRF-QEYILALADVPSSPYGVKIIELSQTTAKVSFNKPD-------------  220 (389)
T ss_dssp             SSCEEEEECCCSTTSSEEEEEEEEETTEEEE-EEEEEEECCCCCCCEEEEEEEECSSCEEEEEECCS-------------
T ss_pred             CCEEEEEECCCChhhCEEEEEEEEcCCCcEE-EEEEEEecCCCCCCcceEEeeccCCEEEEEEeCCC-------------
Confidence             235699999999999999999999998753 45566654443211000011112233343332100             


Q ss_pred             cccccccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        194 KIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       194 ~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                                             ...+.|.  ..+.|.+++....    ..+ ........|.|.++...|.|.|+|.|.
T Consensus       221 -----------------------~~~g~pi~~y~v~~~~~~~~~~----~~~-~~~~~~~~~~i~~l~~~~~y~~~v~A~  272 (389)
T 2jll_A          221 -----------------------SHGGVPIHHYQVDVKEVASEIW----KIV-RSHGVQTMVVLNNLEPNTTYEIRVAAV  272 (389)
T ss_dssp             -----------------------CCTTSCEEEEEEEEEETTCSCC----EEE-ECSTTCSEEEECSCCTTCEEEEEEEEE
T ss_pred             -----------------------CCCCcceEEEEEEEEECCCccc----EEe-eccCCcceEEECCccCCCEEEEEEEEE
Confidence                                   0012222  2466877764221    111 111224578999999999999999999


Q ss_pred             ecccceeeEE
Q psy15667        272 NTAAQARYSS  281 (286)
Q Consensus       272 N~~g~~~~~~  281 (286)
                      |..|....+.
T Consensus       273 N~~G~~~~s~  282 (389)
T 2jll_A          273 NGKGQGDYSK  282 (389)
T ss_dssp             ESSCBCCCCC
T ss_pred             cCCccCCCCc
Confidence            9998765443

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.6e-25  Score=175.84  Aligned_cols=184  Identities=24%  Similarity=0.402  Sum_probs=129.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|++++|.|.+.+.|.+.+.|++++..+....++.+..    . +....|.|.+++.+|+|.|+|.
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~-~~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFGKELIQSRKYKMSS----D-GRTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETTEEECCCSSEEEEE----S-SSEEEEEEECCSGGGCEEEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECCEECCCCccEEEEe----C-CCEEEEEEecCCccCCEEEEEE
Confidence            7899999999999999999999999999999999999999987766664321    1 2223578888888888888888


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee--
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR--  159 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~--  159 (286)
                      +.|..|....                                                       ...|.|...|.+.  
T Consensus        82 ~~n~~~~~~~-------------------------------------------------------~~~l~v~~~p~~~~~  106 (197)
T 3lcy_A           82 ATNEVGEVET-------------------------------------------------------SSKLLLQATPQFHPG  106 (197)
T ss_dssp             EECSSCEEEE-------------------------------------------------------EEEEEEEEEEEECTT
T ss_pred             EECCCCceeE-------------------------------------------------------EEEEEEEcCCCCCCC
Confidence            8776544321                                                       1112221111110  


Q ss_pred             --cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        160 --LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       160 --~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                        ......+..|+.+.|.|.+.+                                        .|.+.+.|++++..+..
T Consensus       107 ~~~~~~~~~~~g~~~~l~C~~~~----------------------------------------~p~p~v~W~~~~~~~~~  146 (197)
T 3lcy_A          107 YPLKEKYYGAVGSTLRLHVMYIG----------------------------------------RPVPAMTWFHGQKLLQN  146 (197)
T ss_dssp             SCCCSEEEEETTSCEEEEEEEEE----------------------------------------ESCCEEEEEETTEECCC
T ss_pred             ccCCcceeecCCCeEEEEEEEee----------------------------------------eeCCeeEEeECCEECCC
Confidence              011223345555555555544                                        45567788888888876


Q ss_pred             CCCceeeecCCCeeeEEEcccCC-CCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ..++.+... .....|.|.++.. +|+|.|+|.|.|..|....++.|.|+
T Consensus       147 ~~~~~~~~~-~~~~~L~i~~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  195 (197)
T 3lcy_A          147 SENITIENT-EHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ  195 (197)
T ss_dssp             CSSEEEEEC-SSEEEEEESSCCHHHHCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CCceEEEEc-CCEEEEEEccccchhhCceEEEEEEcCcCceEEEEEEEEe
Confidence            665555432 2346899999995 89999999999999999999998873

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.94  E-value=6.4e-25  Score=172.66  Aligned_cols=184  Identities=20%  Similarity=0.339  Sum_probs=120.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|...+.+..+.+|++++|.|.+. |.|.+.+.|++||..+....  ++.+..    ..             ...+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g~~l~~~~~~~~~~~~----~~-------------~~~~~~   64 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDGQILELADSTQTQVPL----GE-------------DEQDDW   64 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETTEECCSCEEEEEEEEC----SS-------------STTSEE
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECCEEcccCCCCceEEEE----cc-------------ccccce
Confidence            89999999999999999999999999 99999999999999986542  221100    00             000111


Q ss_pred             EEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce
Q psy15667         79 ACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV  158 (286)
Q Consensus        79 ~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~  158 (286)
                      .                                   ....|.|.++..+|+|.|+|.+.|..+......+.|.|...|.+
T Consensus        65 ~-----------------------------------~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~  109 (195)
T 2c5d_C           65 I-----------------------------------VVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYF  109 (195)
T ss_dssp             E-----------------------------------EEEEEEESSCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEE
T ss_pred             e-----------------------------------eccEEEEEeccccCCcEEEEEEEeCCCceecccEEEEEecCCeE
Confidence            0                                   01245555566666666666665554443333355666555543


Q ss_pred             ecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCC
Q psy15667        159 RLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLS  236 (286)
Q Consensus       159 ~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~  236 (286)
                      ...+ ...+                                       .+|+.+.|.|.+. |.|.+ .+.|+|++..+.
T Consensus       110 ~~~~~~~~~---------------------------------------~~g~~~~l~C~~~-g~p~p~~v~W~~~~~~~~  149 (195)
T 2c5d_C          110 LEEPEDRTV---------------------------------------AANTPFNLSCQAQ-GPPEPVDLLWLQDAVPLA  149 (195)
T ss_dssp             EECCCCEEE---------------------------------------CTTCCEEEEEEEE-CSSCCCEEEEEESSCBSS
T ss_pred             EcCCCcEEE---------------------------------------cCCCEEEEEeECC-CCCCCCEEEEEECCEecc
Confidence            3222 1233                                       3455555555543 45666 889999998876


Q ss_pred             CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEEEE
Q psy15667        237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQV  285 (286)
Q Consensus       237 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L~V  285 (286)
                      .....      .....|.|.++.  |+|.|+|.|.|..|... .++.|.|
T Consensus       150 ~~~~~------~~~~~L~i~~~~--d~G~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          150 TAPGH------GPQRSLHVPGLN--KTSSFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             SSTTS------SCCEEEEECCCS--SCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CCCCc------CCCCeEEEcccc--cCceEEEEEEcCCCceEEEEEEEEE
Confidence            54322      235689999987  89999999999999886 7888877

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.94  E-value=9.1e-25  Score=174.25  Aligned_cols=184  Identities=27%  Similarity=0.430  Sum_probs=119.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccc-ccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV-TVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C   80 (286)
                      ||.|...+.++.+.+|+++.|.|.+.|.|.+.+.|++++..+.........   . .......|.|.++ +.+|+|.|+|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~---~-~~~~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGKKVSNQRFEVIE---F-DDGSGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCTTEEEEE---E-GGGTEEEEEECSCCTTTTCEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCcCCCCCceeEEE---E-cCCCceEEEEeccCCCCCCeEEEE
Confidence            799999999999999999999999999999999999999998754332210   1 1111234677777 4777777777


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC-----
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-----  155 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~-----  155 (286)
                      .|.|..|....                                                       .+.|.|...     
T Consensus        82 ~a~n~~g~~~~-------------------------------------------------------~~~l~V~~~~~~~~  106 (212)
T 2yd6_A           82 VASNNVGEISV-------------------------------------------------------STRLTVLREDQIPR  106 (212)
T ss_dssp             EEEETTEEEEE-------------------------------------------------------EEEEEEECGGGCCT
T ss_pred             EEEcCCCcEEE-------------------------------------------------------EEEEEEeccCccCC
Confidence            77776554321                                                       222222211     


Q ss_pred             --CceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC
Q psy15667        156 --PYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG  232 (286)
Q Consensus       156 --~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g  232 (286)
                        |.+... ....                                       +.+|+.+.|.|.+. |.|.+.+.|+|+|
T Consensus       107 ~~p~~~~~~~~~~---------------------------------------~~~g~~v~l~C~~~-g~p~p~v~W~~~g  146 (212)
T 2yd6_A          107 GFPTIDMGPQLKV---------------------------------------VERTRTATMLCAAS-GNPDPEITWFKDF  146 (212)
T ss_dssp             TCCEEEECCCCEE---------------------------------------EETTSCEEEEEEEE-CSSCCEEEEEETT
T ss_pred             CcceeecCCccee---------------------------------------EecCCCEEEEEEec-CCCCCeEEEEECC
Confidence              111111 1122                                       23455555555553 5677788999999


Q ss_pred             eeCCCC---CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEEEE
Q psy15667        233 KPLSPR---FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQV  285 (286)
Q Consensus       233 ~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L~V  285 (286)
                      ..+...   .++.... ......|.|.++..+|+|.|+|.|.|.+|... ..+.|.|
T Consensus       147 ~~l~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~s~~a~l~~  202 (212)
T 2yd6_A          147 LPVDTSNNNGRIKQLR-SESIGALQIEQSEESDQGKYECVATNSAGTRYSAPANLYV  202 (212)
T ss_dssp             EEC------CCEEEEE-ETTEEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccccCcCCCceEEEEe-cCCeEEEEEcCCCcccCEEEEEEEECCCCccccccccEEE
Confidence            888643   2222222 12357899999999999999999999999764 4455554

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.94  E-value=1.7e-25  Score=189.88  Aligned_cols=238  Identities=18%  Similarity=0.237  Sum_probs=146.9

Q ss_pred             CCCeeEeccccccccCC--CcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCC
Q psy15667          1 TPPILTYSFIEQTLQPG--PAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVED   74 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G--~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D   74 (286)
                      .||.+.+.+.......|  +.++|.|.+.|. | .+.|+|+|||..|..+..... .. ...+.  ....|.|..+..+|
T Consensus         6 ~~P~v~~~~~~~~~~~~~~~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~-~~-~~~g~~~~~s~l~i~~~~~~d   83 (323)
T 2wqr_A            6 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAS-TT-QEGELASTQSELTLSQKHWLS   83 (323)
T ss_dssp             CCCCCEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEE-EE-EETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCEEEEeCCChHHhccCCCcEEEEEEEeCeECCCeEEEEEECCEEcccceecCC-cC-ccCCcEEEEEEEEEcHHHcCC
Confidence            36777776655544444  699999999986 4 479999999999875432111 00 11111  12357888888899


Q ss_pred             CeEEEEEEEcCCEEEEEe-----------------c------------------CCCCC-e---eEEEeeCC-ccCcCC-
Q psy15667         75 GGEYACVAENRAGTCEIT-----------------P------------------YDSGP-Y---LIAWFKDG-RQIPGR-  113 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~~~-----------------~------------------~~~~~-~---~~~W~~~g-~~l~~~-  113 (286)
                      +|.|+|+|.|..+.....                 +                  .+..| +   .+.|+|++ ..+... 
T Consensus        84 ~g~Y~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~  163 (323)
T 2wqr_A           84 DRTYTCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHST  163 (323)
T ss_dssp             TCCEEEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCC
T ss_pred             CCcEEEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCccccccc
Confidence            999999999987654311                 0                  00112 3   89999964 544321 


Q ss_pred             ------C-----CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeec
Q psy15667        114 ------T-----SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYP  182 (286)
Q Consensus       114 ------~-----~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p  182 (286)
                            .     ....|.|.++..+|+|.|+|.|.|..+..   ...+.|.........+.+.+                
T Consensus       164 ~~~~~~~~g~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~---~~~~~v~~~~~~~~~P~v~~----------------  224 (323)
T 2wqr_A          164 RKEEKQRNGTLTVTSTLPVGTRDWIEGETYQCRVTHPHLPR---ALMRSTTKTSGPRAAPEVYA----------------  224 (323)
T ss_dssp             CEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTSSS---CEEEEECCCCSCCBCCEEEE----------------
T ss_pred             CCCccCCCCCEEEEEEEEECHHHccCCCCEEEEEECCCCCC---CeeeEEEccCCCCCCCEEEE----------------
Confidence                  0     12369999999999999999999976422   22333321100000111100                


Q ss_pred             CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceee----ecC---CCeeeEE
Q psy15667        183 IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVS----DLD---SFSSLLS  254 (286)
Q Consensus       183 ~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~----~~~---~~~~~L~  254 (286)
                            ..         .+...+ .|+.+.|.|.+....|+ +.+.|+|+|..+.... +...    ..+   ...+.|.
T Consensus       225 ------~~---------~~~~~~-~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~-~~~~~~~~~~~g~~~~~s~L~  287 (323)
T 2wqr_A          225 ------FA---------TPEWPG-SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDAR-HSTTQPRKTKGSGFFVFSRLE  287 (323)
T ss_dssp             ------EE---------CCCCTT-CTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGG-EEECCCEECSSSSEEEEEEEE
T ss_pred             ------eC---------CChHHh-cCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCc-eeecCcccCCCCcEEEEEEEE
Confidence                  00         001112 37788888877643444 4899999999875431 1110    000   1135799


Q ss_pred             EcccCCCCCeEEEEEEEecccc
Q psy15667        255 INSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       255 i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      |..+..+|+|.|+|.|.|..+.
T Consensus       288 i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          288 VTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EEHHHHHHCCCEEEEEECTTST
T ss_pred             EChHHccCCCEEEEEEEeCCCC
Confidence            9999999999999999999876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=4.6e-25  Score=195.22  Aligned_cols=263  Identities=16%  Similarity=0.228  Sum_probs=163.5

Q ss_pred             eccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEcC-----------------CCCeeEeceEEecccceeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFELP-----------------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      ..+..+++.+|++++|.|.+.+.+  .+.+.|+|+  +..+.                 ...|+.+..  . .......|
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~~~L   81 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISR--D-NAKNTLYL   81 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEE--E-TTTTEEEE
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE--e-CCCCeEEE
Confidence            345667899999999999998874  678999985  32210                 123443311  1 11112369


Q ss_pred             EEcccccCCCeEEEEEEEcCCEE---------EEEe------c-------C----------------C-CCC-eeEEEee
Q psy15667         66 NISHVTVEDGGEYACVAENRAGT---------CEIT------P-------Y----------------D-SGP-YLIAWFK  105 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~~g~---------~~~~------~-------~----------------~-~~~-~~~~W~~  105 (286)
                      .|.+++.+|+|.|.|.|.|..+.         ..+.      |       .                + .++ ..+.|+|
T Consensus        82 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  161 (444)
T 1igt_B           82 QMSRLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNS  161 (444)
T ss_dssp             EECSCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGG
T ss_pred             EECCCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEec
Confidence            99999999999999999986421         1111      0       0                0 012 3899999


Q ss_pred             CCccCcC---C-----C---CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE------------------cCCC
Q psy15667        106 DGRQIPG---R-----T---SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL------------------GGLP  156 (286)
Q Consensus       106 ~g~~l~~---~-----~---~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v------------------~~~~  156 (286)
                      ++..+..   .     .   ....|.|.++..+| |.|+|.|.|..+... ....+.+                  ...|
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~i~~~~~~~~~~~~~~~~~~~~~~~p  239 (444)
T 1igt_B          162 GSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTK-VDKKIEPRGPTIKPCPPCKCPAPNLLGGP  239 (444)
T ss_dssp             GTBCTTEEECCCEEETTEEEEEEEEEECSTTTTT-SCCEEEEEETTTTEE-EEEECCCCCCSCCCCCCCSCCCSCCCCCC
T ss_pred             CCCCCCeEecCccccCCcEEEEEEEEEchhhcCC-CeEEEEEEeCCCCcc-eEEEeccCCCCcccCCccccCCcccCCCc
Confidence            9876421   0     0   12458899999999 999999999987642 2233322                  1123


Q ss_pred             ce-ecCCceE--EecCCCEEEEeeEeeec----CCeEEEEEcCCccc-------------------c-------------
Q psy15667        157 YV-RLIPKVT--AIDGEGLSIKCPVAGYP----IEEVHWEKVPPKIE-------------------S-------------  197 (286)
Q Consensus       157 ~~-~~~~~~~--~~~g~~~~l~c~~~~~p----~~~v~w~~~~~~~~-------------------~-------------  197 (286)
                      .+ ...+...  +..|+.++|.|.+.|.|    .+.+.|.+....+.                   .             
T Consensus       240 ~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~  319 (444)
T 1igt_B          240 SVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKE  319 (444)
T ss_dssp             EEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCE
T ss_pred             eEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCc
Confidence            33 2222222  36899999999999984    35899987321110                   0             


Q ss_pred             --cc----------------------cc--------cCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceee
Q psy15667        198 --FA----------------------FP--------FDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVS  244 (286)
Q Consensus       198 --~~----------------------~~--------~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~  244 (286)
                        |.                      .+        ...+ .++.+.|.|.+....|++ .+.|+|+|..+.........
T Consensus       320 Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~-~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~  398 (444)
T 1igt_B          320 FKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEM-TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPV  398 (444)
T ss_dssp             EEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGT-TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCE
T ss_pred             EEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHc-cCCeEEEEEEEEeeeCCCCEEEEEECCEEccccccccce
Confidence              00                      00        0012 344599999987646665 99999999987432111111


Q ss_pred             ec-CC---CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        245 DL-DS---FSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       245 ~~-~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .. ++   ....|.|.....+|.|.|+|.|.|..-
T Consensus       399 ~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          399 LDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             ECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             eCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            11 11   123567777777889999999999863

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.93  E-value=3.3e-24  Score=167.91  Aligned_cols=178  Identities=22%  Similarity=0.316  Sum_probs=117.8

Q ss_pred             CCCeeEeccccccccC-CCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          1 TPPILTYSFIEQTLQP-GPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~-G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      .||.|.. +.+.++.+ |++++|.|.+.+.|.  +.+.|++++..+..+....        .  ...|.|.+++.+|+|.
T Consensus         2 ~~P~i~~-~~~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~~~~--------~--~~~L~i~~~~~~d~G~   70 (190)
T 2wv3_A            2 NEPRIVT-SEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNGVELTATRKNA--------S--NMEYRINKPRAEDSGE   70 (190)
T ss_dssp             -CCEEEE-CCCEECCCSSSCEEEEEEEEECSSCEEEEEEEETTEECTTCCBCC--------S--EEEEEESSCCGGGCEE
T ss_pred             CCCcccc-cceEEEccCCceEEEEEEeccCCCCceEEEEEECCEECcccceEe--------c--cEEEEEecCCcccCEE
Confidence            3788886 55566666 999999999999887  8899999999887544321        1  1247788888888888


Q ss_pred             EEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc
Q psy15667         78 YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY  157 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~  157 (286)
                      |+|.|.|. +..                                                       ...+.|.|...|.
T Consensus        71 Y~C~~~n~-~~~-------------------------------------------------------~~~~~l~V~~~p~   94 (190)
T 2wv3_A           71 YHCVYHFV-SAP-------------------------------------------------------KANATIEVKAAPD   94 (190)
T ss_dssp             EEEEEEET-TEE-------------------------------------------------------EEEEEEEEECCCE
T ss_pred             EEEEEEeC-Ccc-------------------------------------------------------cccEEEEEecCCc
Confidence            88877764 222                                                       1123344433333


Q ss_pred             eecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCee
Q psy15667        158 VRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKP  234 (286)
Q Consensus       158 ~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~  234 (286)
                      +... ....+..|+.+.|.|.+.                                        |.|.+.+.|+|  +|..
T Consensus        95 ~~~~~~~~~~~~g~~v~l~C~~~----------------------------------------g~p~p~i~W~~~~~g~~  134 (190)
T 2wv3_A           95 ITGHKRSENKNEGQDAMMYCKSV----------------------------------------GYPHPEWMWRKKENGVF  134 (190)
T ss_dssp             EEEECSEEEEETTSCEEEEEEEE----------------------------------------CSSCCEEEEEEEETTEE
T ss_pred             ccccCCcceeeCCCcEEEEEEeC----------------------------------------ccCCCceEEEEcCCCce
Confidence            3221 123344555555555554                                        44555667777  5654


Q ss_pred             CC---CCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        235 LS---PRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       235 ~~---~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +.   ...++.+.. ......|.|.++. .+|+|.|+|.|.|..|....++.|.|+
T Consensus       135 ~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          135 EEISNSSGRFFIIN-KENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECCCTTSCEEEEE-CSSEEEEEECSCCTTTSCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eeeecCCCeEEEec-CCCeeEEEEEeccccCCCEEEEEEEEecCCcceeEEEEEEE
Confidence            42   223333332 2234589999999 799999999999999999999999884

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.93  E-value=1.7e-24  Score=168.21  Aligned_cols=178  Identities=23%  Similarity=0.430  Sum_probs=113.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+....++.+..   ........|.|.+++.+|+|.|+| 
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~C-   77 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPV---SEQHWIGFLSLKSVERSDAGRYWC-   77 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEEE---ETTEEEEEEEESSCCGGGCEEEEE-
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECCeecCCCCceEEEe---cCCCceEEEEEeecCcccCeEEEE-
Confidence            6889999999999999999999999999999999999999887654432210   001111234455555555555555 


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI  161 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~  161 (286)
                                                                           .+.|..+......+.|.|..+|.+...
T Consensus        78 -----------------------------------------------------~~~~~~~~~~~~~~~l~V~~~p~~~~~  104 (182)
T 1rhf_A           78 -----------------------------------------------------QVEDGGETEISQPVWLTVEGVPFFTVE  104 (182)
T ss_dssp             -----------------------------------------------------EESSCTTCEECCCEEEEEECSCEEEEC
T ss_pred             -----------------------------------------------------EEEcCCCcEEEEEEEEEEecCCeEEec
Confidence                                                                 444443332233455555554443222


Q ss_pred             C-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCC
Q psy15667        162 P-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRF  239 (286)
Q Consensus       162 ~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~  239 (286)
                      + ...                                       +.+|+.+.|.|.+. +.|.| .+.|+|++..+....
T Consensus       105 ~~~~~---------------------------------------~~~g~~~~l~C~~~-g~p~p~~v~W~~~~~~~~~~~  144 (182)
T 1rhf_A          105 PKDLA---------------------------------------VPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIGGPA  144 (182)
T ss_dssp             CCCEE---------------------------------------ECTTCCEEEEEEEE-CSSSCCEEEEEETTEECSCSE
T ss_pred             CcceE---------------------------------------ecCCCEEEEEeEec-CCCCCCEEEEEcCCeECCCCC
Confidence            1 122                                       33455555555553 55666 889999998775431


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEEEEC
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQVK  286 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L~V~  286 (286)
                      .        ....|.|.++  +|+|.|+|.|.|..|... .++.|.|+
T Consensus       145 ~--------~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~s~~~~l~Vk  182 (182)
T 1rhf_A          145 P--------SPSVLNVTGV--TQSTMFSCEAHNLKGLASSRTATVHLQ  182 (182)
T ss_dssp             E--------SSEEEEECCC--SSCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             C--------CceEEEEecc--ccCeEEEEEEECCCCCcccceEEEEeC
Confidence            1        2567899988  699999999999999886 48899886

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.93  E-value=2.8e-24  Score=168.27  Aligned_cols=186  Identities=20%  Similarity=0.359  Sum_probs=118.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEee-CCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTL-DGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +|+.|...+.++.+.+|++++|.|.+.+.| .+.+.|++ ||..+.. ..++.+..    .......|.|.+++.+|+|.
T Consensus         1 rp~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~   76 (191)
T 1epf_A            1 RVLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW----NDDDSSTLTIYNANIDDAGI   76 (191)
T ss_dssp             --CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEE----EETTEEEEEECSCCGGGCEE
T ss_pred             CceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEE----CCCCceEEEEccCCcccCEE
Confidence            589999999999999999999999999977 89999999 8877763 33433211    00111235566666666666


Q ss_pred             EEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc
Q psy15667         78 YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY  157 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~  157 (286)
                      |+|.+.|..                                                      +......+.|.+...|.
T Consensus        77 Y~C~~~~~~------------------------------------------------------~~~~~~~~~l~v~~~p~  102 (191)
T 1epf_A           77 YKCVVTAED------------------------------------------------------GTQSEATVNVKIFQKLM  102 (191)
T ss_dssp             EEEEEEETT------------------------------------------------------TEEEEEEEEEEEECCSE
T ss_pred             EEEEEEcCC------------------------------------------------------CcceEEEEEEEeecCce
Confidence            666655543                                                      21112234444443333


Q ss_pred             eecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       158 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      +...+.                                      ...+.+|+.+.|.|.+. |.|.+.+.|+|++..+..
T Consensus       103 ~~~~~~--------------------------------------~~~~~~g~~~~l~C~~~-g~p~~~v~W~~~~~~~~~  143 (191)
T 1epf_A          103 FKNAPT--------------------------------------PQEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVIL  143 (191)
T ss_dssp             EEECCS--------------------------------------SEECCTTSCEEECCEEE-CSSCCEEEEEETTEEGGG
T ss_pred             EecCCC--------------------------------------cEeecCCCeEEEEEEEC-CCCCCEEEEEECCEEeec
Confidence            222111                                      11244566666666654 667788899999988753


Q ss_pred             CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .....+....  ++.|.|.++..+|+|.|+|.|.|..|.......+.|
T Consensus       144 ~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~v  189 (191)
T 1epf_A          144 KKDVRFIVLS--NNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQV  189 (191)
T ss_dssp             GCCTTEEECT--TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEE
T ss_pred             cCCceEEEec--CCeEEECCCChhhCEEEEEEEEEecceeEEEEEEEE
Confidence            3222222211  347999999999999999999999976666555554

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.93  E-value=1.6e-24  Score=169.12  Aligned_cols=184  Identities=21%  Similarity=0.385  Sum_probs=117.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .+|.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+..  +.++...    .++    .|.|.+++.+|+|.|
T Consensus         1 s~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~d~G~Y   72 (189)
T 2v5t_A            1 SMLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML----ANN----NLQILNINKSDEGIY   72 (189)
T ss_dssp             CCCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CBCCCTTEEEC----TTS----CEEETTCCGGGCEEE
T ss_pred             CCceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCccceeccCCeEEEe----cCC----CEEEeeCCHhHCcEE
Confidence            489999999999999999999999999999999999999887652  3333221    111    266777777777777


Q ss_pred             EEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce
Q psy15667         79 ACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV  158 (286)
Q Consensus        79 ~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~  158 (286)
                      +|.+.|..+.                                                     ........+.+...|.+
T Consensus        73 ~C~~~~~~~~-----------------------------------------------------~~~~~~~~l~v~~~p~~   99 (189)
T 2v5t_A           73 RCEGRVEARG-----------------------------------------------------EIDFRDIIVIVNVPPAI   99 (189)
T ss_dssp             EEEEEETTTT-----------------------------------------------------EEEEEEEEEEEEEEEEE
T ss_pred             EEEEEEcCCC-----------------------------------------------------ceEEEEEEEEecCCCCc
Confidence            7766553210                                                     00011122222222211


Q ss_pred             ecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC
Q psy15667        159 RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  238 (286)
Q Consensus       159 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~  238 (286)
                      ...+...                                    ...+.+|+.+.|.|.+. |.|.+.+.|+|+|..+...
T Consensus       100 ~~~~~~~------------------------------------~~~~~~g~~v~l~C~~~-g~p~~~v~W~~~g~~~~~~  142 (189)
T 2v5t_A          100 SMPQKSF------------------------------------NATAERGEEMTFSCRAS-GSPEPAISWFRNGKLIEEN  142 (189)
T ss_dssp             ECSCCEE------------------------------------EEETTSCCCEEEECEEE-EESCCEEEEEETTEECCCS
T ss_pred             ccccccc------------------------------------cccccCCCcEEEEEEEc-cCCCCeEEEEECCEECcCC
Confidence            1111100                                    01134556666666553 4566788999999988766


Q ss_pred             CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+..+..   ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       143 ~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  186 (189)
T 2v5t_A          143 EKYILKG---SNTELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV  186 (189)
T ss_dssp             SSEEEET---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEec---CCCEEEEcCCChhhCeeEEEEEEeCCCceeEEEEEEE
Confidence            5544332   2457999999999999999999999999999988876

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=6.3e-25  Score=172.01  Aligned_cols=180  Identities=26%  Similarity=0.482  Sum_probs=121.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.+.+.|++++..+.. +.++.+.    .++.   .|.|.+++.+|+|.|+|
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~----~~~~---~L~i~~~~~~d~G~Y~C   79 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR----ENGQ---LLTILSVEDSDDGIYCC   79 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE----GGGT---EEEESSCCGGGCEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc----CCcc---EEEEcCCCcccCeEEEE
Confidence            68888888888999999999999999999999999999988864 3444321    1221   36677777777777777


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .+.|..|.                                                      .......|.|...|.+..
T Consensus        80 ~~~~~~~~------------------------------------------------------~~~~~~~l~v~~~p~~~~  105 (192)
T 2iep_A           80 TANNGVGG------------------------------------------------------AVESCGALQVKMKPKITR  105 (192)
T ss_dssp             EEECSSSC------------------------------------------------------CEEEEEEEEEEEEEEEEE
T ss_pred             EEEcCCCc------------------------------------------------------eeEeEEEEEEEeCCcccc
Confidence            77664322                                                      111122233322222221


Q ss_pred             C-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        161 I-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       161 ~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      . ....+..|+.+.|.|.+.+                                        .|.+.+.|+|++..+....
T Consensus       106 ~~~~~~~~~g~~~~l~C~~~g----------------------------------------~p~~~v~W~~~~~~~~~~~  145 (192)
T 2iep_A          106 PPINVKIIEGLKAVLPCTTMG----------------------------------------NPKPSVSWIKGDSALRENS  145 (192)
T ss_dssp             CCCCEEEETTSCEEECCEEEE----------------------------------------ESCCEEEEEETTEECCCCS
T ss_pred             CCcceEEeCCCcEEEEEEEec----------------------------------------cCCceEEEEeCCEEccCCC
Confidence            1 1234455666666665544                                        4455778888888876655


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEEC
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  286 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V~  286 (286)
                      ++.+..    .+.|.|.++..+|+|.|+|.|.|..|.. +.++.|.|+
T Consensus       146 ~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  189 (192)
T 2iep_A          146 RIAVLE----SGSLRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE  189 (192)
T ss_dssp             SEEECT----TSCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             cEEEec----CCcEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEEEE
Confidence            443322    3479999999999999999999999987 446777763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.93  E-value=1.7e-24  Score=173.02  Aligned_cols=186  Identities=27%  Similarity=0.445  Sum_probs=115.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.+..+.+|++++|.|.+.|.|.+.+.|+++|..+........ ......+.....|.|.+++.+|+|.|+|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~~~~~~~~~~-~~~~~~~~~~~~l~i~~v~~~d~G~Y~C   86 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSH-RVQFKDGALFFYRTMQGKKEQDGGEYWC   86 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEECCCSSSSSS-EEECTTSCEEESSCCBSSSCBCCEEEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcCccCCCccce-eEEecCCceEEEEEeccCCcccCceEEE
Confidence            489999999999999999999999999999999999999998865321100 0001122222223456666666666666


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC-Ccee
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL-PYVR  159 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~-~~~~  159 (286)
                      .+.|..|..                                                      ......|.|... +.+.
T Consensus        87 ~~~n~~g~~------------------------------------------------------~~~~~~l~v~~~~~~~~  112 (217)
T 2vr9_A           87 VAKNRVGQA------------------------------------------------------VSRHASLQIAVLRDDFR  112 (217)
T ss_dssp             EEEETTEEE------------------------------------------------------ECCCEEEEECEECCSCS
T ss_pred             EEecCCCcc------------------------------------------------------ccccceEEEEEeCCCcE
Confidence            666654432                                                      111222322211 1111


Q ss_pred             c-CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC
Q psy15667        160 L-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  238 (286)
Q Consensus       160 ~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~  238 (286)
                      . .....+                                       .+|+.+.|.|.+..+.|.+.+.|+|+|..+...
T Consensus       113 ~~~~~~~~---------------------------------------~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~  153 (217)
T 2vr9_A          113 VEPKDTRV---------------------------------------AKGETALLECGPPKGIPEPTLIWIKDGVPLDDL  153 (217)
T ss_dssp             BCCCCEEE---------------------------------------CTTSCEEECCBCCCEESCCEEEEEETTEEECCC
T ss_pred             ECCCccEE---------------------------------------cCCCeEEEEEECCCCCCCCeEEEEECCcCCCcc
Confidence            1 112223                                       345555555554345666778888888777532


Q ss_pred             C--------CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        239 F--------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       239 ~--------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .        +..+.    ..+.|.|.++..+|+|.|+|.|.|..|....+..+.
T Consensus       154 ~~~~~~~~~~~~~~----~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~~l  203 (217)
T 2vr9_A          154 KAMSFGASSRVRIV----DGGNLLISNVEPIDEGNYKCIAQNLVGTRESSYAKL  203 (217)
T ss_dssp             CCC---CCCSEEEE----TTTEEEESSCCSTTCEEEEEEEEETTEEEECCCEEE
T ss_pred             cccccccCCcEEec----CCCcEEEeeCCHHHCeEEEEEEEcccceeccccEEE
Confidence            1        22111    134799999999999999999999999887765543

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.93  E-value=1.1e-24  Score=193.51  Aligned_cols=265  Identities=17%  Similarity=0.277  Sum_probs=163.1

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE---c--------------CCCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE---L--------------PTNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~---l--------------~~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+..+++.+|++++|.|.+.+.|  .+.+.|+|+  +..   +              ....|+.+..  .. ......|.
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~-~~~~~~L~   82 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTA--DT-SANTAYME   82 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEE--ET-TTTEEEEE
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEE--eC-CCCEEEEE
Confidence            45567899999999999999876  788999984  221   1              0123443211  11 11224699


Q ss_pred             EcccccCCCeEEEEEEEcCCE------------------EEEEe------c-----------------------CCC-C-
Q psy15667         67 ISHVTVEDGGEYACVAENRAG------------------TCEIT------P-----------------------YDS-G-   97 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~~g------------------~~~~~------~-----------------------~~~-~-   97 (286)
                      |.+++.+|+|.|+|.|.|..|                  ...+.      |                       .+. + 
T Consensus        83 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H           83 LRSLRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             ECSCCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             ECCCCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            999999999999999988643                  11111      0                       001 1 


Q ss_pred             CeeEEEeeCCccCcC------CCC------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc------------
Q psy15667         98 PYLIAWFKDGRQIPG------RTS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG------------  153 (286)
Q Consensus        98 ~~~~~W~~~g~~l~~------~~~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~------------  153 (286)
                      ++.+.|+|++..+..      ...      ...|.|.++..+| |.|+|.+.|..+... ....+.+.            
T Consensus       163 ~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~~~~~~~  240 (457)
T 1hzh_H          163 PVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKAEPKSCDKTHTCPPCP  240 (457)
T ss_dssp             CCEEEETTTTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGT-SCCEEEEEEGGGTEE-EEEECCCCCSCSSCSCCSCC
T ss_pred             CeEEEEEeCCEeccceEcCceECCCCCEEEEEEEEecccccCC-ceEEEEEEeCCCCcc-eeEEecccCCCcccccCCCC
Confidence            257999999975421      001      1368999999999 999999999766532 22233321            


Q ss_pred             -----CCCce-ecCCceE--EecCCCEEEEeeEeeecCC----eEEEEEcCCccc-------------------------
Q psy15667        154 -----GLPYV-RLIPKVT--AIDGEGLSIKCPVAGYPIE----EVHWEKVPPKIE-------------------------  196 (286)
Q Consensus       154 -----~~~~~-~~~~~~~--~~~g~~~~l~c~~~~~p~~----~v~w~~~~~~~~-------------------------  196 (286)
                           ..|.+ ...+...  +..|+.+.|.|.+.|.|++    .+.|.+....+.                         
T Consensus       241 ~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~  320 (457)
T 1hzh_H          241 APELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLH  320 (457)
T ss_dssp             CCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEECCCEEEEEEECTTSCEEEEEEECCCH
T ss_pred             CccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccccccccccceecCCCcEEEEEEEEECH
Confidence                 12322 1122211  4579999999999998653    899987431110                         


Q ss_pred             -----c----cc-------------c---------c--------cCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCC
Q psy15667        197 -----S----FA-------------F---------P--------FDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS  236 (286)
Q Consensus       197 -----~----~~-------------~---------~--------~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~  236 (286)
                           .    |.             .         +        ...+. ++.+.|.|.+....|+ +.+.|+|+|..+.
T Consensus       321 ~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~-~~~~~l~C~~~g~~p~~~~v~W~k~g~~l~  399 (457)
T 1hzh_H          321 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELT-KNQVSLTCLVKGFYPSDIAVEWESNGQPEN  399 (457)
T ss_dssp             HHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGG-SSEEEEEEEEEEEBSSCCEEEEEETTEECC
T ss_pred             HHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccC-CCcEEEEEEEEeEECCCCEEEEEECCEECc
Confidence                 0    00             0         0        00122 3449999998754444 5999999999885


Q ss_pred             CCCCceeeec-CC---CeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        237 PRFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       237 ~~~~~~~~~~-~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                      ......+... ++   ....|.|.....+|+|.|+|.|.|......
T Consensus       400 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~~~  445 (457)
T 1hzh_H          400 NYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEALHNH  445 (457)
T ss_dssp             CEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTSGGG
T ss_pred             ceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECCCCCc
Confidence            4321111111 11   123466666666889999999999865443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.92  E-value=3.1e-24  Score=170.43  Aligned_cols=164  Identities=17%  Similarity=0.232  Sum_probs=115.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .|.|...+.+..+.+|++++|.|.+.+.|.+. +.|++||..+....               ..|.|.+++.+|+|.|+|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g~~l~~~~---------------~~L~i~~v~~~D~G~Y~C   71 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQA---------------SSYFIDAATVDDSGEYRC   71 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETTEEESCCS---------------SEEEESSCCGGGCEEEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECCEEcccCc---------------cEEEEecccccCCEEEEE
Confidence            47788888888999999999999999998876 99999998876432               137789999999999999


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .|.|...                                                         +..+.|.|...+.+..
T Consensus        72 ~a~n~~~---------------------------------------------------------s~~~~l~V~~~p~~~~   94 (204)
T 3sgj_C           72 QTQLSTL---------------------------------------------------------SDPVQLEVHIGWLLLQ   94 (204)
T ss_dssp             EETTSBC---------------------------------------------------------CCCEEEEEECSSEEEE
T ss_pred             EeCCCcc---------------------------------------------------------cccEEEEEecCceEec
Confidence            8765210                                                         0112233322222111


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      .+...                                       +.+|+.+.|.|.+..+.|.+.+.|+|+|..+...  
T Consensus        95 ~~~~~---------------------------------------v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~--  133 (204)
T 3sgj_C           95 APRWV---------------------------------------FKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYF--  133 (204)
T ss_dssp             CSCSE---------------------------------------EETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE--
T ss_pred             CCcee---------------------------------------EeCCCcEEEEEEecCCCCCceEEEEECCcEeecc--
Confidence            11222                                       3345556666655555667889999999875211  


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                          .   ....|.|.++..+|+|.|+|.|.| ..+..+..+.|.|
T Consensus       134 ----~---~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~s~~~~l~V  172 (204)
T 3sgj_C          134 ----H---HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSETVQITI  172 (204)
T ss_dssp             ----E---ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ----c---CCceEEECcCCcccCEEEEEEEEeCCCceecCcEEEEE
Confidence                1   145799999999999999999999 5566667777776

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.92  E-value=2.7e-23  Score=165.22  Aligned_cols=190  Identities=22%  Similarity=0.323  Sum_probs=117.8

Q ss_pred             CCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEEecC
Q psy15667         16 PGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEITPY   94 (286)
Q Consensus        16 ~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~   94 (286)
                      .|+.+.|.|.+.+ +|.+.+.|+++|..+..+.++.+..    .+. ...|.|.+++.+|+|.|+|.|.|..|.......
T Consensus        16 ~~~~~~l~C~~~~~~p~~~i~W~~~g~~i~~~~~~~~~~----~~~-~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~   90 (212)
T 2r15_A           16 TAEGIQLYSFVTYYVEDLKVNWSHNGSAIRYSDRVKTGV----TGE-QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVD   90 (212)
T ss_dssp             CSSEEEEEEEBSSCCSSCEEEEEETTEECCCCSSEEEEE----ETT-EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             cCceEEEEEEEeccCCCceEEEEECCEEccCCCeEEEEE----eCC-EEEEEECCCCcccCEEEEEEEecCCcceEEEEE
Confidence            5677788888777 4689999999999998777765421    122 235889999999999999998887665432100


Q ss_pred             CCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCc-eecCC-ceEEecCCCE
Q psy15667         95 DSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPY-VRLIP-KVTAIDGEGL  172 (286)
Q Consensus        95 ~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~-~~~~~-~~~~~~g~~~  172 (286)
                            +.    ......    ....+                   ... . ...+.....|. +...+ ...+      
T Consensus        91 ------l~----v~~~~~----~~~~~-------------------~~~-~-~~~~~~~~~p~~~~~~~~~~~v------  129 (212)
T 2r15_A           91 ------LS----GQAYDE----AYAEF-------------------QRL-K-QAAIAEKNRARVLGGLPDVVTI------  129 (212)
T ss_dssp             ------EC----HHHHHH----HHHHH-------------------HHH-H-HHHHHHHHSCEEEEBCCSEEEE------
T ss_pred             ------EE----Eeeccc----hhhhc-------------------ccc-C-cccccccCCCcccccCCCcEEE------
Confidence                  00    000000    00000                   000 0 00000000010 00011 1223      


Q ss_pred             EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeee
Q psy15667        173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL  252 (286)
Q Consensus       173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~  252 (286)
                                                       .+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+.........
T Consensus       130 ---------------------------------~~g~~~~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~  175 (212)
T 2r15_A          130 ---------------------------------QEGKALNLTCNVW-GDPPPEVSWLKNEKALAQTDHCNLKFEAGRTAY  175 (212)
T ss_dssp             ---------------------------------ETTCCEEEEEEEE-CSSCCEEEEEETTEEECCCSSEEEEEETTTEEE
T ss_pred             ---------------------------------ccCCeEEEEEEEc-CCCCceEEEEECCeECccCCCEEEEEcCCCEEE
Confidence                                             3455555555543 567778899999998877666666554344568


Q ss_pred             EEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       253 L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       176 L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V  208 (212)
T 2r15_A          176 FTINGVSTADSGKYGLVVKNKYGSETSDFTVSV  208 (212)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEcCcchHHCeEEEEEEEcCCCcEEEEEEEEE
Confidence            999999999999999999999999999998887

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.92  E-value=9.3e-23  Score=182.02  Aligned_cols=266  Identities=17%  Similarity=0.320  Sum_probs=164.5

Q ss_pred             eccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--EEcC-----------------CCCeeEeceEEecccceeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--FELP-----------------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      ..+..+++.+|++++|.|.+.+.+  .+.+.|+|+.  ..+.                 ...|+....   ........|
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~L   82 (475)
T 1iga_A            6 EQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTR---DTSATTAYM   82 (475)
T ss_pred             ccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEE---cCCCCeEEE
Confidence            356677899999999999998765  6789999853  2110                 123433211   001122369


Q ss_pred             EEcccccCCCeEEEEEEEcCCE------------EEEEe------c----------------------CCCCC---eeEE
Q psy15667         66 NISHVTVEDGGEYACVAENRAG------------TCEIT------P----------------------YDSGP---YLIA  102 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~~g------------~~~~~------~----------------------~~~~~---~~~~  102 (286)
                      .|.+++.+|+|.|.|.+.|..|            ...+.      |                      .+..|   ..+.
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~g~~v~L~C~~~g~~P~~p~~v~  162 (475)
T 1iga_A           83 GLSSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLSLCSTQPDGNVVIACLVQGFFPQEPLSVT  162 (475)
T ss_pred             EECCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecCccccCCCCeEEEEEEEeeecCCCceEEE
Confidence            9999999999999999988643            01111      0                      00112   3899


Q ss_pred             EeeCCccCcCC-------CC------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc----------------
Q psy15667        103 WFKDGRQIPGR-------TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG----------------  153 (286)
Q Consensus       103 W~~~g~~l~~~-------~~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~----------------  153 (286)
                      |++++......       ..      ...|.|.++..+|+|.|+|.|.|..+......+.+.|.                
T Consensus       163 W~~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~  242 (475)
T 1iga_A          163 WSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSP  242 (475)
T ss_pred             EcCCCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccCCC
Confidence            99998643210       01      13578888889999999999999876422222332221                


Q ss_pred             --CCCceec-CCc-eEEecCCCEEEEeeEeeecC---CeEEEEEcCCccc------------------c-----------
Q psy15667        154 --GLPYVRL-IPK-VTAIDGEGLSIKCPVAGYPI---EEVHWEKVPPKIE------------------S-----------  197 (286)
Q Consensus       154 --~~~~~~~-~~~-~~~~~g~~~~l~c~~~~~p~---~~v~w~~~~~~~~------------------~-----------  197 (286)
                        ..|.+.. .+. ..+..|+.+.|.|.+.|.++   +.+.| .......                  .           
T Consensus       243 ~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~~~~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~  321 (475)
T 1iga_A          243 SCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQGPPERDLCGCYSVSSVLPGCAEPWNHG  321 (475)
T ss_pred             CCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-CCCCcCCccccCceECCCCCEEEEEEEEEchHHhccC
Confidence              1222212 222 22468999999999998754   58999 3211000                  0           


Q ss_pred             -------------------c-----cc-c------c--CCCCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCcee
Q psy15667        198 -------------------F-----AF-P------F--DGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       198 -------------------~-----~~-~------~--~~~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~  243 (286)
                                         .     .. +      .  ..+.+|+.+.|.|.+....| .+.+.|+|+|..+........
T Consensus       322 G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~  401 (475)
T 1iga_A          322 KTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTW  401 (475)
T ss_pred             CcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEECCEECCCCceeec
Confidence                               0     00 0      0  11356888999999875444 369999999998865421100


Q ss_pred             --eec----C---CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        244 --SDL----D---SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       244 --~~~----~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                        ...    +   .....|.|.....+|.|.|+|.|.|....
T Consensus       402 ~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          402 ASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             ccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence              000    0   01346778888888999999999998654

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.92  E-value=8.6e-25  Score=192.98  Aligned_cols=264  Identities=17%  Similarity=0.255  Sum_probs=163.3

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--EEc----C-------------CCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--FEL----P-------------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~~l----~-------------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+..+++.+|++++|.|.+.+.+  .+.|.|+|++  ..+    .             ...|+.+..  .. ......|.
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~~-~~~~~~L~   81 (434)
T 1igy_B            5 ESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTR--DR-SSNTANIH   81 (434)
T ss_dssp             CCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCB--CG-GGCBBCEE
T ss_pred             CCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEE--EC-CCCEEEEE
Confidence            45667899999999999999864  6789999863  221    0             023443211  00 01123589


Q ss_pred             EcccccCCCeEEEEEEEcCCE------EEEEe------c-----------------------CCC-CCe-eEEEeeCCcc
Q psy15667         67 ISHVTVEDGGEYACVAENRAG------TCEIT------P-----------------------YDS-GPY-LIAWFKDGRQ  109 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~~g------~~~~~------~-----------------------~~~-~~~-~~~W~~~g~~  109 (286)
                      |.+++.+|+|.|+|.|.|..+      ...+.      |                       .+. +.+ .+.|+|++..
T Consensus        82 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~  161 (434)
T 1igy_B           82 LSSLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLS  161 (434)
T ss_dssp             ECSBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBC
T ss_pred             ECCCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcC
Confidence            999999999999999987422      11111      0                       000 122 8999999876


Q ss_pred             CcC--------CC---CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC------------CCceec-CCceE
Q psy15667        110 IPG--------RT---SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG------------LPYVRL-IPKVT  165 (286)
Q Consensus       110 l~~--------~~---~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~------------~~~~~~-~~~~~  165 (286)
                      +..        ..   ....|.|.++..+| |.|+|.|.|..+... ....+.+..            .|.+.. .+...
T Consensus       162 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-g~Y~C~a~n~~~~~~-~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~  239 (434)
T 1igy_B          162 SGVHTFPAVLQSDLYTLSSSVTVPSSPRPS-ETVTCNVAHPASSTK-VDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPK  239 (434)
T ss_dssp             SSEEECCCEECSSCEEEEEEEEEETTTTTS-SCCEEEEECTTTTCC-EEEECCCCCCCCCCCCCCCSSSCCEEEECCCHH
T ss_pred             CCeEecCceecCCcEEEEEEEEEcchhcCC-CcEEEEEEeCCCCcc-ceeeccCCCCCCccccCCCCcCcEEEEeCCChH
Confidence            421        00   12458899999999 999999999887632 123332210            033322 22222


Q ss_pred             --EecCCCEEEEeeEeeec----CCeEEEEEcCCccc-------------------c---------------cc------
Q psy15667        166 --AIDGEGLSIKCPVAGYP----IEEVHWEKVPPKIE-------------------S---------------FA------  199 (286)
Q Consensus       166 --~~~g~~~~l~c~~~~~p----~~~v~w~~~~~~~~-------------------~---------------~~------  199 (286)
                        +..|+.+.|.|.+.|.|    .+.+.|.+....+.                   .               |.      
T Consensus       240 ~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~  319 (434)
T 1igy_B          240 DTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAF  319 (434)
T ss_dssp             HHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSC
T ss_pred             HhcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCC
Confidence              67899999999999984    34799987321110                   0               00      


Q ss_pred             ----------------cc-------cCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceee-ecCC---Cee
Q psy15667        200 ----------------FP-------FDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVS-DLDS---FSS  251 (286)
Q Consensus       200 ----------------~~-------~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~-~~~~---~~~  251 (286)
                                      .+       .....+|+.+.|.|.+....|+ +.+.|+|+|..+......... ..++   ...
T Consensus       320 ~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s  399 (434)
T 1igy_B          320 PAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQSDGQAPENYKNTQPIMDTDGSYFVYS  399 (434)
T ss_dssp             SSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEEETTSCCSCCEECCCCCCSSSCEEEEE
T ss_pred             CCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEEECCEecCCceeccceeCCCCcEEEEE
Confidence                            00       0012247789999998754453 589999999987432111110 0011   124


Q ss_pred             eEEEcccCCCCCeEEEEEEEecccc
Q psy15667        252 LLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .|.|.....+|+|.|+|.|.|....
T Consensus       400 ~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          400 KLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             EEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             EEEECchhccCCCEEEEEEEcCCCC
Confidence            5778888788999999999998654

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.92  E-value=1.2e-23  Score=167.16  Aligned_cols=187  Identities=26%  Similarity=0.423  Sum_probs=113.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeE-eceEEecccce-eEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFV-IGQFVSGHGDV-ISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~-~~~~~~~~~~~-~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.++.+.+|++++|.|.+.|+|.+.+.|++++..+....... ........+.. ...|.|.+++.+|+|.|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence            7899999999999999999999999999999999999998886432100 00000011110 011223344444455555


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC-ce
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP-YV  158 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~-~~  158 (286)
                      |                                                      .+.|..|........|.|...+ .+
T Consensus        89 C------------------------------------------------------~~~n~~g~~~~~~~~l~V~~~~~~~  114 (212)
T 2v9r_A           89 C------------------------------------------------------VARNYLGEAVSHDASLEVAILRDDF  114 (212)
T ss_dssp             E------------------------------------------------------EEEETTEEEECCCEEEEECEECSSC
T ss_pred             E------------------------------------------------------EEECCCCceeecceEEEEEeccccc
Confidence            5                                                      4444443322223334432211 11


Q ss_pred             e-cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        159 R-LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       159 ~-~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      . ......+..                                       |+.+.|.|.+..+.|.+.+.|+|+|..+..
T Consensus       115 ~~~~~~~~~~~---------------------------------------g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~  155 (212)
T 2v9r_A          115 RQNPSDVMVAV---------------------------------------GEPAVMECQPPRGHPEPTISWKKDGSPLDD  155 (212)
T ss_dssp             SBCCCCEEEET---------------------------------------TSCEEEECBCCCEESCCEEEEEETTEEECT
T ss_pred             eeCCCceEecC---------------------------------------CCcEEEEEecCCCCCCCEEEEEECCccCCC
Confidence            1 111223334                                       445555554434566778889999988865


Q ss_pred             CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE-EEEEE
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS-SKLQV  285 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~-~~L~V  285 (286)
                      ........    .+.|.|.++..+|+|.|+|.|.|..|..... +.|.|
T Consensus       156 ~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V  200 (212)
T 2v9r_A          156 KDERITIR----GGKLMITYTRKSDAGKYVCVGTNMVGERESEVAELTV  200 (212)
T ss_dssp             TSTTEEEE----TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             CcceEEcc----CCeEEEeeCCHhhCeeEEEEEecccCceecceEEEEE
Confidence            43322221    3479999999999999999999999986553 77776

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.92  E-value=1e-23  Score=185.55  Aligned_cols=186  Identities=17%  Similarity=0.186  Sum_probs=127.1

Q ss_pred             CCCeeEEEeeCCccCcCCC-------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEec
Q psy15667         96 SGPYLIAWFKDGRQIPGRT-------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID  168 (286)
Q Consensus        96 ~~~~~~~W~~~g~~l~~~~-------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~  168 (286)
                      .+++.+.|++++..+....       ....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...|.+.......+..
T Consensus        75 ~P~p~i~W~~~~~~l~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~~~~~~p~~~~~  153 (423)
T 3qs7_E           75 PGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNY-TILFTVSIRNTLLYTLRRPYFRKM  153 (423)
T ss_dssp             CSSCEEEEEETTEEECCCCBC-----CEEEEEESSCCSSSCSEEEEEEEC--CEE-EEEEEEEEC-----CEEEEEEEEC
T ss_pred             CCCCeEEEEECCCccCccceeccccceEEEEEEeecCcccCEEEEEEEEcCCCcE-EEEEEEEEecCccccccCCcEecc
Confidence            3457899999987765321       12469999999999999999999998875 346778887555443222234556


Q ss_pred             CCCEEEEeeEeeecCCeEEEEEcCCcccc-------------------------c------------------------c
Q psy15667        169 GEGLSIKCPVAGYPIEEVHWEKVPPKIES-------------------------F------------------------A  199 (286)
Q Consensus       169 g~~~~l~c~~~~~p~~~v~w~~~~~~~~~-------------------------~------------------------~  199 (286)
                      |..+.|.|.+.|.|.|.|.|.+.......                         |                        .
T Consensus       154 ~~~~~L~C~a~G~P~P~i~W~k~~~~~~~~~~~~~~~~~~~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~  233 (423)
T 3qs7_E          154 ENQDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT  233 (423)
T ss_dssp             SSSSCEEEEEEESSCCEEEEEEC-------------CEEECCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSS
T ss_pred             CCceEEEEEEeeecCCeEEEEECCCCCccccccccccccccceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccC
Confidence            88889999999999999999873211100                         0                        0


Q ss_pred             cccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-----CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        200 FPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-----DSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       200 ~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .....+.+|+.+.|.|.+....|.+.+.|+|+|..+...........     ......|.|.++..+|+|.|+|.|.|. 
T Consensus       234 ~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~-  312 (423)
T 3qs7_E          234 LPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH-  312 (423)
T ss_dssp             TTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSBCCGGGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE-
T ss_pred             CCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEEccccceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC-
Confidence            00122567999999999986578899999999998754321111110     011357999999999999999999999 


Q ss_pred             cceeeEEEEEE
Q psy15667        275 AQARYSSKLQV  285 (286)
Q Consensus       275 g~~~~~~~L~V  285 (286)
                        ...++.|.|
T Consensus       313 --~~~~~~L~V  321 (423)
T 3qs7_E          313 --PSQSALVTI  321 (423)
T ss_dssp             --EEEEEEEEE
T ss_pred             --CCceEEEEE
Confidence              566666765

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.91  E-value=8.6e-24  Score=166.55  Aligned_cols=78  Identities=15%  Similarity=0.206  Sum_probs=57.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.. .+.+|++++|.|.+.+ |.+.+.|+|+|..+....+...      .......|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDRQNPL------EPKNKARFSIPSMTEDYAGRYRCY   76 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEEECCC------SSSSEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccccccc------cCCceEEEEeccCCcccCceEEEE
Confidence            6788877766 8999999999999998 7789999999987754221110      011123577888888888888888


Q ss_pred             EEcCCE
Q psy15667         82 AENRAG   87 (286)
Q Consensus        82 a~n~~g   87 (286)
                      |.|..|
T Consensus        77 a~n~~g   82 (196)
T 3p2t_A           77 YRSPVG   82 (196)
T ss_dssp             EEETTE
T ss_pred             EeCCCc
Confidence            887654

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.91  E-value=3e-23  Score=166.95  Aligned_cols=186  Identities=25%  Similarity=0.404  Sum_probs=118.1

Q ss_pred             CCeeEecc----ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSF----IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~----~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+    ....+.+|++++|.|.+.|.|.+.+.|++++..+....++..... . .+.  ..|.|.+++.+|+|.
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~-~~~--~~L~i~~~~~~d~G~   90 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV-R-NQH--WSLIMESVVPSDKGN   90 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEE-E-GGG--TEEEECSCCGGGCEE
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECCccccccccccceee-e-cCc--ceEEEecCCcccCEE
Confidence            67776665    677899999999999999999999999999998865443311111 0 111  137778888888888


Q ss_pred             EEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC--
Q psy15667         78 YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL--  155 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~--  155 (286)
                      |+|.+.|..|....                                                       ...|.|...  
T Consensus        91 Y~C~~~n~~~~~~~-------------------------------------------------------~~~l~V~~~~~  115 (231)
T 3ojm_B           91 YTCVVENEYGSINH-------------------------------------------------------TYHLDVVERSR  115 (231)
T ss_dssp             EEEEEEETTEEEEE-------------------------------------------------------EEEEEEECCCC
T ss_pred             EEEEEecccCcccc-------------------------------------------------------cEEEEEEcCCC
Confidence            88877776554321                                                       122222111  


Q ss_pred             --Cceec--CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-
Q psy15667        156 --PYVRL--IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-  230 (286)
Q Consensus       156 --~~~~~--~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-  230 (286)
                        |.+..  .....+..|+.+.|.|.+.+.|.+                                        .+.|+| 
T Consensus       116 ~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p----------------------------------------~v~W~~~  155 (231)
T 3ojm_B          116 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQP----------------------------------------HIQWIKH  155 (231)
T ss_dssp             CCCEECTTCSCCEEEETTCCEEEECCEECSSCC----------------------------------------EEEEEEE
T ss_pred             CCCceeeccCCceEEEeCCcEEEEEEEecCCCC----------------------------------------EEEEEEC
Confidence              11110  123445567777777766555544                                        455555 


Q ss_pred             ---CCeeCCCCCCcee--ee----cCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        231 ---DGKPLSPRFPVNV--SD----LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       231 ---~g~~~~~~~~~~~--~~----~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                         +|..+........  ..    .......|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       156 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  220 (231)
T 3ojm_B          156 VEKNGSKYGPDGLPYLKVLKHSGINSSNAEVLALFNVTEADAGEYICKVSNYIGQANQSAWLTVL  220 (231)
T ss_dssp             CCBTTBSBCTTSCBCEEEEEECSTTCSCTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCCCccccCCCcceEeEecccccccCCccEEEEecCCHHHCeEEEEEEEeccceEeeEEEEEEe
Confidence               4444432221111  00    01123579999999999999999999999999999998873

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=5.5e-23  Score=164.71  Aligned_cols=183  Identities=21%  Similarity=0.305  Sum_probs=119.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .+.|...+.++.+.+|+++.|.|.+.+.|.+.+.|++++..+.....              ..|.|.+++.+|+|.|+|.
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNT--------------SELIFNAVHVKDAGFYVCR   83 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEECTTCCS--------------SEEEETTCCGGGCEEEEEE
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEECCCCCC--------------CEEEEccCChhhCeEeEEE
Confidence            46788899999999999999999999999999999999988764321              1378899999999999998


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI  161 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~  161 (286)
                      +.|..|...                                                      +..+.|.|...+.....
T Consensus        84 ~~n~~~~~~------------------------------------------------------s~~~~l~V~~~~~~~~~  109 (218)
T 3k0w_A           84 VNNNFTFEF------------------------------------------------------SQWSQLDVCDIPESFQR  109 (218)
T ss_dssp             EECTTCCEE------------------------------------------------------CCCEEEEEECCCGGGCT
T ss_pred             EEcCCCCce------------------------------------------------------eeEEEEEEEccCccccc
Confidence            888643221                                                      00111222111100000


Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      . .....            .+.|.+.  .        ......+.+|+.+.|.|.+ .+.|.+.+.|+|+|..+....  
T Consensus       110 ~-~~~~~------------~~~p~~~--~--------~~~~~~v~~G~~v~L~C~~-~g~p~~~v~W~~~~~~~~~~~--  163 (218)
T 3k0w_A          110 S-VDGVS------------ESKLQIC--V--------EPTSQKLMPGSTLVLQCVA-VGSPIPHYQWFKNELPLTHET--  163 (218)
T ss_dssp             T-CCSBC------------CSSCEEE--E--------CCCCEEECTTCCEEEECEE-EBSSCCEEEEEETTEECTTCC--
T ss_pred             c-ccccc------------CCCceEE--E--------CCCceeecCCCcEEEEEEe-cccCCCeEEEEECCEECCCCC--
Confidence            0 00000            0000000  0        0001124456666777766 366778899999998875432  


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V~  286 (286)
                              ...|.|.++..+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus       164 --------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  201 (218)
T 3k0w_A          164 --------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEIIID  201 (218)
T ss_dssp             --------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEEEEC
T ss_pred             --------CCEEEEeecChhcCEEEEEEEEcCCCCceeeeEEEEEe
Confidence                    347999999999999999999999886 6667777663

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.91  E-value=1.8e-24  Score=171.56  Aligned_cols=187  Identities=20%  Similarity=0.218  Sum_probs=107.7

Q ss_pred             cccccCCCcEEEEEE---eecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         11 EQTLQPGPAVSLKCI---ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~---~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      ++++..|+.++|.|.   +.+.|.|.|.|+|+|..+..   ....   ......   +.+..-.   .|.|.-       
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~---~~~~---~~~~~~---~~~~~~~---~~~~~~-------   62 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQ---VLIG---RMHHDV---IFIEWPF---RGFFDI-------   62 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEE---EEEE---EEETTE---EEECGGG---BTTEEE-------
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcce---EEEE---ecCCce---EEeeccc---cceEEE-------
Confidence            467899999999995   66889999999998754321   1000   000000   0000000   011100       


Q ss_pred             EEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEe
Q psy15667         88 TCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAI  167 (286)
Q Consensus        88 ~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~  167 (286)
                                      +.       ......|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+...+.    
T Consensus        63 ----------------~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~~p~~~~~~~~----  114 (203)
T 4fa8_A           63 ----------------HR-------SANTFFLVVTAANISHDGNYLCRMKLGETEV-TKQEHLSVVKPLTLSVHSE----  114 (203)
T ss_dssp             ----------------EE-------ETTEEEEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEEEEE----
T ss_pred             ----------------EE-------cCCEEEEEEccCCHHHCeEEEEEEEcCCCcE-EEEEEEEecCCceeeecce----
Confidence                            00       0123569999999999999999999988765 3456676654332221111    


Q ss_pred             cCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC----CCCcee
Q psy15667        168 DGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPVNV  243 (286)
Q Consensus       168 ~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~----~~~~~~  243 (286)
                                                        ...+.+|+.+.|.|.+. |.|.|.+.|++++..+..    ..++.+
T Consensus       115 ----------------------------------~~~v~~g~~~~l~C~~~-G~P~P~v~W~~~~~~~~~~~~~~~r~~~  159 (203)
T 4fa8_A          115 ----------------------------------RSQFPDFSVLTVTCTVN-AFPHPHVQWLMPEGVEPAPTAANGGVMK  159 (203)
T ss_dssp             ----------------------------------ECCSSCSCCEEEEEEEE-EESCCEEEECCC------------CCEE
T ss_pred             ----------------------------------eEEEcCCCEEEEEEEcC-CCCCCEEEEEECCeeecCcccccceEEE
Confidence                                              12244566666666553 556667777765543321    112222


Q ss_pred             eecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        244 SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       244 ~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      . .++.-..|.|.++..+|+|.|+|.|.|.+|+++..
T Consensus       160 ~-~~g~l~il~i~~v~~~D~G~YtC~A~N~~G~a~~v  195 (203)
T 4fa8_A          160 E-KDGSLSVAVDLSLPKPWHLPVTCVGKNDKEEAHGV  195 (203)
T ss_dssp             C-TTSCEEEEEEEEECSSCCCCEEEEEESSSCEEEEE
T ss_pred             e-CCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEE
Confidence            1 11222345667999999999999999999998753

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.91  E-value=9.1e-24  Score=163.44  Aligned_cols=164  Identities=17%  Similarity=0.233  Sum_probs=111.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.|...+....+.+|++++|.|.+.+.|.+. +.|++||..+..+.               ..|.|.+++.+|+|.|+|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~~~~~~~~---------------~~L~i~~~~~~d~G~Y~C   71 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA---------------SSYFIDAATVNDSGEYRC   71 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC---------------SEEEESSCCGGGCEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECCEEccCCc---------------eEEEEeCCCcccCEEEEE
Confidence            68888888888999999999999999998776 78999998764321               137788888888888888


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .+.|..+                                                         +....|.|...+.+..
T Consensus        72 ~~~n~~~---------------------------------------------------------s~~~~l~V~~~~~~~~   94 (175)
T 1fnl_A           72 QTNLSTL---------------------------------------------------------SDPVQLEVHIGWLLLQ   94 (175)
T ss_dssp             ECSSSCC---------------------------------------------------------CCCEEEEEECSSEEEE
T ss_pred             EeeCCcc---------------------------------------------------------cccEEEEEeCCCceee
Confidence            7766211                                                         0112222221111111


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      .+...                                       +.+|+.+.|.|.+..+.|++.+.|+|+|..+...  
T Consensus        95 ~~~~~---------------------------------------~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~--  133 (175)
T 1fnl_A           95 APRWV---------------------------------------FKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF--  133 (175)
T ss_dssp             CSCSE---------------------------------------EETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE--
T ss_pred             CCCce---------------------------------------ecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC--
Confidence            11112                                       3345556666655444555689999999876311  


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V  285 (286)
                             .....|.|.++..+|+|.|+|.|.|..| ..+.++.|.|
T Consensus       134 -------~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  172 (175)
T 1fnl_A          134 -------HHNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETVNITI  172 (175)
T ss_dssp             -------EECCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             -------CCCCEEEEcccChhhCeEEEEEEEcCCCCccCccEEEEE
Confidence                   1145799999999999999999999655 4566677766

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.91  E-value=7.4e-24  Score=168.26  Aligned_cols=194  Identities=23%  Similarity=0.368  Sum_probs=121.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |+.|...+.++.+.+|++++|.|.+.+.|.+.+.|++++..+..   +..      ...        .+.....+.+   
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~---~~~------~~~--------~~~~~~~~r~---   60 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTA---LVC------YNS--------QITAPYADRV---   60 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEE---EEE------ETT--------EECGGGTTTE---
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceee---EEe------cCC--------cccccccCcE---
Confidence            56788888888999999999999999999999999998754310   000      000        0000000000   


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceec
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRL  160 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~  160 (286)
                                          ..           ....|.|.++..+|+|.|+|.+.+..|.. ....+.|.|..+|.+..
T Consensus        61 --------------------~~-----------~~~~L~i~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  109 (212)
T 1f97_A           61 --------------------TF-----------SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPT  109 (212)
T ss_dssp             --------------------EE-----------ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCE
T ss_pred             --------------------Ee-----------eceeEEEcccCcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcc
Confidence                                00           01457777777777777777777765521 23345566654433211


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSPRF  239 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~~~  239 (286)
                      .+.                                      ...+.+|+.+.|.|.+..+.|.+.+.|+|++. .+....
T Consensus       110 ~~~--------------------------------------~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~  151 (212)
T 1f97_A          110 ISV--------------------------------------PSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADA  151 (212)
T ss_dssp             EEC--------------------------------------CSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC---
T ss_pred             cCC--------------------------------------ccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccc
Confidence            100                                      11234566677777654577788889999988 775432


Q ss_pred             Cc-------eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce--eeEEEEEE
Q psy15667        240 PV-------NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQV  285 (286)
Q Consensus       240 ~~-------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~~~~~L~V  285 (286)
                      ..       .+.. ......|.|.++..+|+|.|+|.|.|..|..  +..+.|.|
T Consensus       152 ~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~~~l~V  205 (212)
T 1f97_A          152 KKTRAFMNSSFTI-DPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA  205 (212)
T ss_dssp             --CBSCSSSCEEE-CTTTCCEEESSCCGGGCEEEEEEEECSSSCCEECCCEEEEE
T ss_pred             cccccccCceeEe-cCCCceEEEEecChhhCcEEEEEEccccCCccccceEEEEE
Confidence            21       1111 1235689999999999999999999999988  56666665

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=8.5e-24  Score=181.05  Aligned_cols=253  Identities=15%  Similarity=0.197  Sum_probs=139.1

Q ss_pred             ccccccccCCCcEEEEEEeecC--CCCeeEEeeC--CEEcC-----------------CCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFELP-----------------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~l~-----------------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+..+++.+|++++|.|.+.+.  |.+.+.|+|+  +..+.                 ...|+.+..  . .......|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~~~L~   82 (344)
T 1za6_B            6 QSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTA--D-TSASTAYVE   82 (344)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEE--E-TTTTEEEEE
T ss_pred             CCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEE--e-cCCCEEEEE
Confidence            4556789999999999999987  4689999987  33220                 123443321  0 111223699


Q ss_pred             EcccccCCCeEEEEEEEcCCEE------EEEe------------c-----------------CCCCC--eeEEEeeCCcc
Q psy15667         67 ISHVTVEDGGEYACVAENRAGT------CEIT------------P-----------------YDSGP--YLIAWFKDGRQ  109 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~~g~------~~~~------------~-----------------~~~~~--~~~~W~~~g~~  109 (286)
                      |.+++.+|+|.|+|.|.|..+.      ..+.            +                 .+..|  +.+.|+|||..
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~  162 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALT  162 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBC
T ss_pred             ECCCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEEEEecCCcc
Confidence            9999999999999999885321      1111            0                 00112  57999999976


Q ss_pred             CcC---------CC---CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEee
Q psy15667        110 IPG---------RT---SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCP  177 (286)
Q Consensus       110 l~~---------~~---~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~  177 (286)
                      +..         ..   ....|.|.++..+| |.|+|.|.|..+... ....+.+...  +..........|.  .+...
T Consensus       163 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~-~~~~~~~~v~--~~~~~~~~~~~~~--~l~~~  236 (344)
T 1za6_B          163 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK-VDKKVEPKSC--DKTHTCPPCGGGS--SGGGS  236 (344)
T ss_dssp             TTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEE-EEEEECCCCC----------------------
T ss_pred             CceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc-ceEeeccccc--ccccccCCCCCCc--ccccc
Confidence            421         00   12368898888888 999999999876531 1122211000  0000000000000  00000


Q ss_pred             EeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeeecCC----Ceee
Q psy15667        178 VAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDS----FSSL  252 (286)
Q Consensus       178 ~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~----~~~~  252 (286)
                      .....+|.+.-.         . +.....+|+.+.|.|.+....| .+.+.|+|+|..+.......+.....    ....
T Consensus       237 ~~~~~~P~v~~~---------~-~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~g~~~~~s~  306 (344)
T 1za6_B          237 GGQPREPQVYTL---------P-PSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGSFFLYSK  306 (344)
T ss_dssp             --CCBCCEEEEE---------C-CCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSCCCSEEECCCEECTTSCEEEEEE
T ss_pred             CCCCcCCEEEEe---------C-CChHhccCCcEEEEEEEeeEECCCeEEEEEECCeECCCcEecceEECCCCcEEEEEE
Confidence            000011121110         0 0111223556889998865344 47899999998875432111111111    1235


Q ss_pred             EEEcccCCCCCeEEEEEEEecccceee
Q psy15667        253 LSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       253 L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      |.|.....+|+|.|+|.|.|.......
T Consensus       307 l~i~~~~~~~~g~YtC~a~~~~l~~~~  333 (344)
T 1za6_B          307 LTVDKSRWQQGNVFSCSVMHEALHNHY  333 (344)
T ss_dssp             EEECHHHHHTTCEEEEEEECTTSTTSE
T ss_pred             EEEChHHccCCCeEEEEEEcCCCCCCe
Confidence            667777778899999999998754433

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.91  E-value=5.6e-23  Score=166.70  Aligned_cols=186  Identities=27%  Similarity=0.400  Sum_probs=114.4

Q ss_pred             CCeeEecc----ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSF----IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~----~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|....    ....+.+|++++|.|.+.|.|.+.+.|++++..+....++..... . ...  ..|.|.+++.+|+|.
T Consensus        11 ~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~-~-~~~--~~L~i~~v~~~d~G~   86 (241)
T 3grw_A           11 APYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL-R-HQQ--WSLVMESVVPSDRGN   86 (241)
T ss_dssp             CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETTEECCGGGSTTCCEE-E-GGG--TEEEECSCCGGGCEE
T ss_pred             CceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECCcccCCCCcccceee-e-ccc--eEEEEEeCCcccCEE
Confidence            56666443    356889999999999999999999999999998864433211011 0 111  136777777777777


Q ss_pred             EEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC--
Q psy15667         78 YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL--  155 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~--  155 (286)
                      |+|.+.|..|....                                                       ...|.|...  
T Consensus        87 Y~C~~~~~~~~~~~-------------------------------------------------------~~~l~V~~~~~  111 (241)
T 3grw_A           87 YTCVVENKFGSIRQ-------------------------------------------------------TYTLDVLERSP  111 (241)
T ss_dssp             EEEEEEETTEEEEE-------------------------------------------------------EEEEEEECCCC
T ss_pred             EEEEEeecCCceEE-------------------------------------------------------EEEEEEeccCC
Confidence            77777765544321                                                       122222111  


Q ss_pred             --Cceec--CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-
Q psy15667        156 --PYVRL--IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-  230 (286)
Q Consensus       156 --~~~~~--~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-  230 (286)
                        +.+..  .....                                       +.+|+.+.|.|.+. +.|.+.+.|++ 
T Consensus       112 ~~~~~~~~~~~~~~---------------------------------------~~~g~~v~L~C~~~-~~p~p~v~W~~~  151 (241)
T 3grw_A          112 HRPILQAGLPANQT---------------------------------------AVLGSDVEFHCKVY-SDAQPHIQWLKH  151 (241)
T ss_dssp             CCCEEEECTTCSEE---------------------------------------CCTTCCEEEEEEEE-CSSCCEEEEEEE
T ss_pred             CCceeecCCCccce---------------------------------------ecCCCEEEEEEEEe-cCCCCEEEEEEc
Confidence              00000  11122                                       33445555555442 44555677777 


Q ss_pred             ---CCeeCCCCCCceeee-------cCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        231 ---DGKPLSPRFPVNVSD-------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       231 ---~g~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                         +|..+..........       .......|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       152 ~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  217 (241)
T 3grw_A          152 VEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVH  217 (241)
T ss_dssp             CCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEC-
T ss_pred             ccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEEEEecCcceEEEEEEEEec
Confidence               666554332211110       01125679999999999999999999999999999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.91  E-value=2.1e-23  Score=160.31  Aligned_cols=165  Identities=19%  Similarity=0.329  Sum_probs=115.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .|.|...+....+.+|++++|.|.+.+.| .+.+.|+++|..+.....               .+.|.+++.+|+|.|+|
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g~~~~~~~~---------------~~~~~~~~~~d~G~Y~C   68 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTC   68 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEE
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECCeEcccCcc---------------ceEEEecccccCeEEEE
Confidence            46677788778899999999999999987 679999999998865321               14467888888888888


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .+.|...                                                         ...+.|.|...+.+..
T Consensus        69 ~~~~~~~---------------------------------------------------------s~~~~l~v~~~~~~~~   91 (170)
T 3ry4_A           69 QTGQTSL---------------------------------------------------------SDPVHLTVLFEWLVLQ   91 (170)
T ss_dssp             EETTSBC---------------------------------------------------------CCCEEEEEECCSEEEE
T ss_pred             EEeCCCc---------------------------------------------------------eEeEEEEEECCceEec
Confidence            7775210                                                         0012222322111111


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      .+..                                       .+.+|+.+.|.|.+..+.|.+.+.|+|+|..+...  
T Consensus        92 ~~~~---------------------------------------~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~--  130 (170)
T 3ry4_A           92 TPHL---------------------------------------EFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFS--  130 (170)
T ss_dssp             CSCS---------------------------------------EECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEE--
T ss_pred             CCCc---------------------------------------eeecCCeEEEEEECCCCCCCceEEEEECCeEcccc--
Confidence            1111                                       23456666677766556677899999999865311  


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V~  286 (286)
                             .....|.|.++..+|+|.|+|.|.|..|. .+..+.|.|+
T Consensus       131 -------~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          131 -------HLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             -------SSCCEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             -------CCCCeEEEEeccccCCEEEEEEEEeCcCccccccEEEEEC
Confidence                   12457999999999999999999999997 6667778775

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.91  E-value=1.4e-23  Score=162.52  Aligned_cols=164  Identities=20%  Similarity=0.238  Sum_probs=112.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.|...+.+..+.+|++++|.|.+.+.|.+ .+.|++++..+..+.               ..|.|.+++.+|+|.|+|
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~~~~---------------~~L~i~~v~~~d~G~Y~C   68 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETN---------------SSLNIVNAKFEDSGEYKC   68 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCS---------------SEEEECSCCGGGCEEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeECCCCc---------------eEEEEeccceecCEEEEE
Confidence            6889999999999999999999999998885 699999998875321               137788999999999999


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .+.|..+.                                                         ..+.|.|...+.+..
T Consensus        69 ~~~~~~~s---------------------------------------------------------~~~~l~V~~~~~~~~   91 (176)
T 1f2q_A           69 QHQQVNES---------------------------------------------------------EPVYLEVFSDWLLLQ   91 (176)
T ss_dssp             ECTTSSCC---------------------------------------------------------CCEEEEEECSSEEEE
T ss_pred             EcCCcccc---------------------------------------------------------ccEEEEEeCcceeec
Confidence            87663210                                                         011222221111100


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      .+...                                       +.+|+.+.|.|.+..+.|.+.+.|+|+|..+.... 
T Consensus        92 ~~~~~---------------------------------------~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~-  131 (176)
T 1f2q_A           92 ASAEV---------------------------------------VMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY-  131 (176)
T ss_dssp             ESCSE---------------------------------------EETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC-
T ss_pred             CCcce---------------------------------------eeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec-
Confidence            11112                                       33566666666665566778999999998874221 


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V  285 (286)
                              ....|.|.++..+|+|.|+|.|.|.. +..+.++.|.|
T Consensus       132 --------~~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~s~~~~l~V  169 (176)
T 1f2q_A          132 --------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPLNITV  169 (176)
T ss_dssp             --------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             --------CCCeEEECCCCcccCEEEEEEEEeCCcceEecCEEEEE
Confidence                    24589999999999999999999964 44555567766

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.90  E-value=2.3e-23  Score=164.14  Aligned_cols=173  Identities=17%  Similarity=0.249  Sum_probs=99.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+|.|...+. ..+.+|++++|.|.+.+.|. .+.|+|+|..+....+...      .......|.|.+++.+|+|.|+|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~------~~~~~~~L~i~~v~~~D~G~Y~C   75 (196)
T 2d3v_A            4 SKATLWAEPG-SVISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNPL------EPKNKARFSIPSMTEHHAGRYRC   75 (196)
T ss_dssp             CBCEEEEESC-SEEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECCC------SSTTEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCC-CcccCCCeEEEEEeCCCCCc-EEEEEECCCCCCccccccc------CCccccEEEeccCChhHCeEEEE
Confidence            3688887775 58999999999999998876 8999999987643211000      00111247777888888888888


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCc
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPY  157 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~  157 (286)
                      .|.|..|...                                                     .+..+.|.|..   .|.
T Consensus        76 ~a~n~~g~~~-----------------------------------------------------~s~~~~l~V~~~~~~p~  102 (196)
T 2d3v_A           76 YYYSPAGWSE-----------------------------------------------------PSDPLELVVTGFYNKPT  102 (196)
T ss_dssp             EEEETTEECB-----------------------------------------------------CCCCEEEEEECSSCCCE
T ss_pred             EEeCCCCcCC-----------------------------------------------------cCccEEEEecCCCCCCe
Confidence            7766543210                                                     01112233321   111


Q ss_pred             eecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       158 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      +...+.                                       ..+.+|+.+.|.|.+. +.| +.+.|+|+|..+..
T Consensus       103 i~~~~~---------------------------------------~~v~~G~~v~L~C~~~-~~p-~~~~W~k~g~~~~~  141 (196)
T 2d3v_A          103 LSALPS---------------------------------------PVVTSGENVTLQCGSR-LRF-DRFILTEEGDHKLS  141 (196)
T ss_dssp             EEC--------------------------------------------------CEEEEEES-SCC-SEEEEEEC---CCE
T ss_pred             EEccCC---------------------------------------ccccCCCcEEEEEEcC-CCC-CEEEEEccCCcccc
Confidence            111111                                       1244566666666654 444 78899999887642


Q ss_pred             CCCc-eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        238 RFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       238 ~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .... ...........|.|.+++.+|+|.|+|.|.|..+
T Consensus       142 ~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~  180 (196)
T 2d3v_A          142 WTLDSQLTPSGQFQALFPVGPVTPSHRWMLRCYGSRRHI  180 (196)
T ss_dssp             EEEECEECTTSCEEEEEECCCCBTTBCEEEEEEEEETTE
T ss_pred             cccccccccCCCceeEEEeeecCcccCeeEEEEEEccCC
Confidence            2110 0111112246899999999999999999999765

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.90  E-value=1.1e-22  Score=177.24  Aligned_cols=183  Identities=28%  Similarity=0.493  Sum_probs=140.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC---CCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.+.+.|++++..+..   ..++..    . ...   .|.|.+++.+|+|.|
T Consensus       121 p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~-~~~---~L~i~~~~~~d~G~Y  192 (403)
T 3laf_A          121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQDLNPIPGDSRVVV----L-PSG---ALQISRLQPGDSGVY  192 (403)
T ss_dssp             CCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSBCCCCTTCCSEEE----C-TTS---CEEECSCCGGGCEEE
T ss_pred             CCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEeccccCCceEEEE----c-CCc---eEEEcccccccCEEE
Confidence            67777777788899999999999999999999999999988742   333321    1 111   488999999999999


Q ss_pred             EEEEEcCCEE-----EEEe----c-----------------------------CCCCCeeEEEeeCCccCcCCC------
Q psy15667         79 ACVAENRAGT-----CEIT----P-----------------------------YDSGPYLIAWFKDGRQIPGRT------  114 (286)
Q Consensus        79 ~C~a~n~~g~-----~~~~----~-----------------------------~~~~~~~~~W~~~g~~l~~~~------  114 (286)
                      +|.|.|..|.     ..+.    +                             ...+++.+.|++++..+....      
T Consensus       193 ~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~~~~~~~~~~~~~~~~  272 (403)
T 3laf_A          193 RCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLL  272 (403)
T ss_dssp             EEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCSSSSEEEE
T ss_pred             EEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEECCeeccCCCceEEEC
Confidence            9999986542     1110    0                             001345799999998876432      


Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCC
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPP  193 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~  193 (286)
                      ....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+... ....+..|+.+.|.|.+.|.|.|.+.|.+...
T Consensus       273 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~  351 (403)
T 3laf_A          273 GGSNLLISNVTDDDSGTYTCVVTYKNENI-SASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGD  351 (403)
T ss_dssp             TTTEEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEEEEEETTE
T ss_pred             CccEEEEeCCCHHHCEEEEEEEEcCCCce-EEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEEEEEECCE
Confidence            23579999999999999999999998865 45678888766655443 34667789999999999999999999998653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.90  E-value=4.7e-23  Score=176.69  Aligned_cols=180  Identities=24%  Similarity=0.306  Sum_probs=113.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C   80 (286)
                      +|.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+.......       .......|.|.+++.+|+| .|+|
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~D~G~~Y~C  230 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------GGLPSLGLTLANVTSDLNRKNVTC  230 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC-------CCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc-------eecccceEEEeeCChHHCCCeEEE
Confidence            7899999999999999999999999999999999999986543111000       0001123555555555555 5555


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~  160 (286)
                      .|.|..                                                      |.. ...+.|.|..+|.+ .
T Consensus       231 ~a~n~~------------------------------------------------------g~~-~~~~~l~V~~~P~i-~  254 (347)
T 2ifg_A          231 WAENDV------------------------------------------------------GRA-EVSVQVNVSFPASV-Q  254 (347)
T ss_dssp             CCEETT------------------------------------------------------EEC-CEEECCCCBEEEEE-E
T ss_pred             EEEcCC------------------------------------------------------CCE-EEEEEEEEcCCCee-e
Confidence            555543                                                      332 12233333222221 0


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                        .....+|+.++|.|.+.|.                                        |.|.+.|+|+|..+.....
T Consensus       255 --~~~~~~g~~v~l~C~~~g~----------------------------------------P~p~i~W~~~g~~l~~~~~  292 (347)
T 2ifg_A          255 --LHTAVEMHHWCIPFSVDGQ----------------------------------------PAPSLRWLFNGSVLNETSF  292 (347)
T ss_dssp             --ECCCEESSSEEEEEEEEEE----------------------------------------SCCEEEEEETTEECCCCSS
T ss_pred             --eccCccCceEEEEEEeeec----------------------------------------CCCcEEEEeCCEECCCCcc
Confidence              0011245555555555544                                        5556777777777764433


Q ss_pred             ceeeecC------CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        241 VNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .......      ...+.|.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus       293 ~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  344 (347)
T 2ifg_A          293 IFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM  344 (347)
T ss_dssp             EEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEECSC
T ss_pred             eeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCceeeEEEEEec
Confidence            2221111      125679999999999999999999999999999988763

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.90  E-value=3.6e-22  Score=160.68  Aligned_cols=128  Identities=15%  Similarity=0.141  Sum_probs=76.3

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ...|.|.++..+|+|.|+|.+.|..|..   ...+.+...+.... .....+                            
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~---~~~v~~~~~~~~~~~~~~~~~----------------------------  130 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYE---KALVELKVAALGSDLHVDVKG----------------------------  130 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEE---EEEEEEEEEBCCCCCEEEEEE----------------------------
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEE---EEEEEEeeccceecccceeee----------------------------
Confidence            3579999999999999999999987654   23333321111110 011222                            


Q ss_pred             ccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        195 IESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                                 .+|..+.|.|.+..+.|.|.+.|+|++..+ ............+.-..+.+..++.+|+|.|+|.|.|.
T Consensus       131 -----------~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~  199 (226)
T 4f80_A          131 -----------YKDGGIHLECRSTGWYPQPQIQWSNNKGENIPTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSS  199 (226)
T ss_dssp             -----------EETTEEEEEEEEEEEBSCCEEEEECTTSCBCCCEECCCEECTTSCEEEEEEEEECC----CEEEEEEET
T ss_pred             -----------ccCCceeeEEEeccCCCCCEEEEEECCceEcCCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeC
Confidence                       245555566655545577788888755433 32222222222222233456678899999999999999


Q ss_pred             ccceeeEEEEEE
Q psy15667        274 AAQARYSSKLQV  285 (286)
Q Consensus       274 ~g~~~~~~~L~V  285 (286)
                      +|....++.|.|
T Consensus       200 ~g~~~~~~~v~v  211 (226)
T 4f80_A          200 LLGLEKTASISI  211 (226)
T ss_dssp             TTTEEEEEEECC
T ss_pred             CCCeEEEEEEEE
Confidence            999999998876

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=1.9e-22  Score=159.10  Aligned_cols=183  Identities=19%  Similarity=0.241  Sum_probs=106.2

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+|.|...+. .++.+|++++|.|.+.+.|. .+.|+|+|..+....+...   .....   ..|.|.+++.+|+|.|+|
T Consensus         4 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~~---~~~~~---~~L~i~~v~~~D~G~Y~C   75 (198)
T 1ugn_A            4 PKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRIPQ---ELVKK---GQFPIPSITWEHTGRYRC   75 (198)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTSCH---HHHTT---TEEEESSCCGGGCEEEEE
T ss_pred             CCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccccc---cCCcc---cEEEECCCCHHHCeEEEE
Confidence            3788887665 58999999999999999886 6999999987632111000   00011   137788888888888888


Q ss_pred             EEEcCC-EEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CC
Q psy15667         81 VAENRA-GTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LP  156 (286)
Q Consensus        81 ~a~n~~-g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~  156 (286)
                      .|.|.. |...                                                     .+..+.|.|..   .|
T Consensus        76 ~a~n~~~g~~~-----------------------------------------------------~s~~~~l~V~~~~~~p  102 (198)
T 1ugn_A           76 YYGSDTAGRSE-----------------------------------------------------SSDPLELVVTGAYIKP  102 (198)
T ss_dssp             EEEETTTEECC-----------------------------------------------------CCCCEEEEEECSSCCC
T ss_pred             EEECCCCCccc-----------------------------------------------------CCccEEEEEcccccCC
Confidence            887754 2110                                                     01112233322   11


Q ss_pred             ceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC
Q psy15667        157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  236 (286)
Q Consensus       157 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~  236 (286)
                      .+...+...                                       +.+|+.+.|.|.+. +. ++.+.|+|+|..+.
T Consensus       103 ~i~~~~~~~---------------------------------------v~~G~~v~L~C~~~-~~-~~~v~W~k~g~~~~  141 (198)
T 1ugn_A          103 TLSAQPSPV---------------------------------------VNSGGNVTLQCDSQ-VA-FDGFILCKEGEDEH  141 (198)
T ss_dssp             EEEEESCSE---------------------------------------EETTCCEEEEEECS-SC-CSEEEEEEC-----
T ss_pred             ccccCCccc---------------------------------------cCCCCcEEEEEecC-CC-CcEEEEEECCCccC
Confidence            111111122                                       33556666666554 33 57889999988764


Q ss_pred             CCCC-ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-----eeeEEEEEE
Q psy15667        237 PRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-----ARYSSKLQV  285 (286)
Q Consensus       237 ~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-----~~~~~~L~V  285 (286)
                      .... ............|.|.++..+|+|.|+|.|.|..+.     .+..+.|.|
T Consensus       142 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (198)
T 1ugn_A          142 PQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDSNSPYEWSLPSDLLELLV  196 (198)
T ss_dssp             -CEEEC------CCEEEEEECCCCTTSCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             CccccccccCCCcceeEEEecccCcccCeEEEEEEEeCCCCccccCcCceEEEEe
Confidence            3211 111111123478999999999999999999998762     245556665

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.89  E-value=4e-23  Score=163.64  Aligned_cols=195  Identities=23%  Similarity=0.365  Sum_probs=121.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ++.|...+.+..+.+|+++.|.|.+.+.|.+.+.|++++..+..   +.     . ..                +.    
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~---~~-----~-~~----------------~~----   54 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTR---LV-----C-YN----------------NK----   54 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEE---ES-----E-ET----------------TE----
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeE---EE-----E-ec----------------Cc----
Confidence            56677788888999999999999999999999999998644210   00     0 00                00    


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceec
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRL  160 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~  160 (286)
                               +.........             .....|.|.++..+|+|.|+|.+.+..|.. ......|.|...|.+..
T Consensus        55 ---------~~~~~~~r~~-------------~~~~~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~  112 (209)
T 1nbq_A           55 ---------ITASYEDRVT-------------FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPT  112 (209)
T ss_dssp             ---------ECTTTTTTCE-------------EETTEEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCC
T ss_pred             ---------cCccccCceE-------------eeccEEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCC
Confidence                     0000000000             011568888888888888888888875521 22345555554443221


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      ...                                      ...+.+|+.+.|.|.+..+.|.+.+.|+|++..+.....
T Consensus       113 ~~~--------------------------------------~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~~~~~~~  154 (209)
T 1nbq_A          113 VNI--------------------------------------PSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPK  154 (209)
T ss_dssp             CCC--------------------------------------BSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSS
T ss_pred             ccc--------------------------------------ccceecCCEEEEEEeCCCCCCCceeEEEECCeeCCCccc
Confidence            110                                      011345666666666545777788889998887754322


Q ss_pred             cee------eecCCCeeeEEEcccCCCCCeEEEEEEEecccce--eeEEEEEE
Q psy15667        241 VNV------SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQV  285 (286)
Q Consensus       241 ~~~------~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~~~~~L~V  285 (286)
                      ...      .........|.|.++..+|+|.|+|.|.|..|..  +..+.|.|
T Consensus       155 ~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~s~~v~l~V  207 (209)
T 1nbq_A          155 STRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEA  207 (209)
T ss_dssp             SSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCCEECCCBCCEE
T ss_pred             cceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcccccccEEEEE
Confidence            100      0011235689999999999999999999999988  44444544

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=1.8e-22  Score=158.90  Aligned_cols=187  Identities=22%  Similarity=0.389  Sum_probs=114.1

Q ss_pred             eeEeccccccccCCCcEEEEEE-eecCCC-CeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCI-ASGNPT-PDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~-~~g~p~-p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .+...+.++.+.+|+++.|.|. +.+.|. +.+.|++++..+.  .+.+...    ....   ..|.|.+++.+|+|.|+
T Consensus        10 ~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~----~~~~---~~L~i~~v~~~d~G~Y~   82 (201)
T 3s97_C           10 FPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFV----SQTN---GNLYIANVEASDKGNYS   82 (201)
T ss_dssp             CCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEE----CTTT---CCEEESSCCGGGCEEEE
T ss_pred             cCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEE----EcCC---CeEEECcCCcccCeEEE
Confidence            3334456778999999999999 889999 9999999987764  2222211    1111   13778888888888888


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR  159 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~  159 (286)
                      |.+.|..+......                     ....+....  .           ....   .....+.+       
T Consensus        83 C~~~~~~~~~~~~~---------------------~~~~~~~~~--~-----------~~~~---~~~p~~~~-------  118 (201)
T 3s97_C           83 CFVSSPSITKSVFS---------------------KFIPLIPIP--E-----------RTTK---PYPADIVV-------  118 (201)
T ss_dssp             EEEEEGGGTEEEEC---------------------CCEEEEEEC--C-----------SSCC---CEEEEEEE-------
T ss_pred             EEEEecCCCcchhh---------------------cccceeecc--c-----------cccC---CCCCceEe-------
Confidence            88877542221110                     000000000  0           0000   00000000       


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      ..+...+..|+.+.|.|.+.+                                        .|.+.+.|++++..+....
T Consensus       119 ~~~~~~~~~g~~~~l~C~~~g----------------------------------------~p~p~v~W~~~~~~~~~~~  158 (201)
T 3s97_C          119 QFKDVYALMGQNVTLECFALG----------------------------------------NPVPDIRWRKVLEPMPSTA  158 (201)
T ss_dssp             ECCCEEEETTCCEEEEEEEEE----------------------------------------ESCCEEEEEETTBCCCTTC
T ss_pred             cCCceEEecCCcEEEEEEccC----------------------------------------CCCCceEEEeCCCcCCCce
Confidence            011233445555555555443                                        4556778888888665432


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                        .+..   ....|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus       159 --~~~~---~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          159 --EIST---SGAVLKIFNIQLEDEGIYECEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             --EEET---TTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             --eecC---CCCEEEEccCChhhCEEEEEEEEecCCceeeeEEEEEe
Confidence              1111   24589999999999999999999999999999999885

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.89  E-value=2.6e-22  Score=156.59  Aligned_cols=169  Identities=19%  Similarity=0.213  Sum_probs=110.8

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|+|...     .      . .+   ..|.|.+++.+|+|.|+|
T Consensus         7 ~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-----~------~-~~---~~L~i~~v~~~D~G~Y~C   69 (184)
T 2gi7_A            7 PKPSLQALPS-SLVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-----Y------Q-DQ---AVLFIPAMKRSLAGRYRC   69 (184)
T ss_dssp             CCCEEEEESC-SEEETTCCEEEEEECST-TCSEEEEEETTTCC-----E------E-SS---SEEEESSCCGGGCEEEEE
T ss_pred             CCCeEEeCCC-ccccCCCcEEEEEeCCC-CCCEEEEEECCccc-----c------C-cc---cEEEECcCChhhCceEEE
Confidence            3688887766 48999999999999988 78899999998651     0      0 11   147899999999999999


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCc
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPY  157 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~  157 (286)
                      .|.|..|....                                                     +..+.|.|..   .|.
T Consensus        70 ~a~n~~g~~~~-----------------------------------------------------s~~~~l~V~~~~~~p~   96 (184)
T 2gi7_A           70 SYQNGSLWSLP-----------------------------------------------------SDQLELVATGVFAKPS   96 (184)
T ss_dssp             EEEETTEEBCC-----------------------------------------------------CCCEEEEEESSSCCCE
T ss_pred             EEEcCCCccCC-----------------------------------------------------CCCEEEEecCcCCCCE
Confidence            98886542100                                                     0011222211   011


Q ss_pred             eecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       158 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      +...                                       +...+.+|+.+.|.|.+. + +++.+.|+|+|..+..
T Consensus        97 i~~~---------------------------------------p~~~v~~G~~v~l~C~~~-~-~~~~~~w~k~g~~~~~  135 (184)
T 2gi7_A           97 LSAQ---------------------------------------PGPAVSSGGDVTLQCQTR-Y-GFDQFALYKEGDPAPY  135 (184)
T ss_dssp             EEEE---------------------------------------CCCSSCCTTCEEEEEECS-S-CCCEEEEEECCCCTTS
T ss_pred             EEeC---------------------------------------CCceecCCCcEEEEEEcC-C-CCcEEEEEECCCcCcc
Confidence            1000                                       112356778888888753 3 3468999999987754


Q ss_pred             CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-----eeeEEEEEE
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-----ARYSSKLQV  285 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-----~~~~~~L~V  285 (286)
                      .....     .....|.|.++..+|+|.|+|.|.|..+.     .+..+.|.|
T Consensus       136 ~~~~~-----~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  183 (184)
T 2gi7_A          136 KNPER-----WYRASFPIITVTAAHSGTYRCYSFSSRDPYLWSAPSDPLELVV  183 (184)
T ss_dssp             CCCCE-----EEEESSSEEEETTCCSEEEEEEEECTTSTTBCCCCCCCEEEEC
T ss_pred             eecCC-----CceEEEEEccCCccCCeEEEEEEEeCCCCcccCCCCCcEEEEe
Confidence            22111     12457899999999999999999998643     244455554

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.89  E-value=1.8e-22  Score=161.09  Aligned_cols=176  Identities=17%  Similarity=0.181  Sum_probs=105.6

Q ss_pred             cccccccCC--CcEEEEEEeecCCCCeeEEeeC---CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          9 FIEQTLQPG--PAVSLKCIASGNPTPDIGWTLD---GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         9 ~~~~~~~~G--~~~~l~C~~~g~p~p~v~W~~~---~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +..+.+.+|  ++++|.|.+.+ |.+.++|+++   +..+..+.++..    ...+    .|.|.+++.+|+|.|+|.|.
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~~~~~----~~~~----~l~I~~v~~~D~G~Y~C~a~   84 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGNRISW----DSKK----GFTIPSYMISYAGMVFCEAK   84 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSSSCEE----ETTT----EEEEEGGGTTTCSEEEEEEC
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCCcccc----cCCc----cEEEccCChhcCceEEEEEE
Confidence            467789999  99999999986 7799999884   666654433321    1111    37788888888888888887


Q ss_pred             cCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC--CCcee--
Q psy15667         84 NRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG--LPYVR--  159 (286)
Q Consensus        84 n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~--~~~~~--  159 (286)
                      |..+...                                                      +..+.|.|..  .|.+.  
T Consensus        85 n~~~~~~------------------------------------------------------s~~~~l~v~~~~~p~~~~~  110 (213)
T 2x1w_L           85 INDESYQ------------------------------------------------------SIMYIVVVVGYRIYDVVLS  110 (213)
T ss_dssp             ----CEE------------------------------------------------------CCCEEEEECBCCEEEEEEE
T ss_pred             ECCeeEE------------------------------------------------------EEEEEEEEeCCcccceEEc
Confidence            7321100                                                      0001111111  01011  


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      ....+.+.+|++++|.|.+.+.|.                                      +++.+.|+++|..+....
T Consensus       111 ~~~~~~v~~G~~v~L~C~~~g~p~--------------------------------------~~~~i~W~~~g~~~~~~~  152 (213)
T 2x1w_L          111 PSHGIELSVGEKLVLNCTARTELN--------------------------------------VGIDFNWEYPSSKHQHKK  152 (213)
T ss_dssp             SCSCEEEETTCCEEEEEEEEECTT--------------------------------------BCCEEEEECSCSSCCSEE
T ss_pred             CCCCeEEcCCCCEEEEEEEECCCC--------------------------------------CceEEEEEecCCccceEE
Confidence            111235567777777777766432                                      223455655555432110


Q ss_pred             C-ceeeec------CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        240 P-VNVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       240 ~-~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      . ......      ......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       153 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V  205 (213)
T 2x1w_L          153 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  205 (213)
T ss_dssp             EEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcEEEEEEEEE
Confidence            0 000000      011457999999999999999999999999999999987

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.89  E-value=2.9e-22  Score=160.61  Aligned_cols=180  Identities=16%  Similarity=0.148  Sum_probs=107.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|||..+....+... .  ..... ...|.|.+++.+|+|.|+|.
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~-~--~~~~~-~~~L~I~~v~~~D~G~Y~C~   82 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRL-K--FWNET-DPEFVIDHMDANKAGRYQCQ   82 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEEC-C------C-CCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccC-C--CCcce-eeEEEEcccccccCEEEEEE
Confidence            688887776 68999999999999987 6789999999865532111000 0  00000 00366677777777777776


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCce
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPYV  158 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~~  158 (286)
                      |.|..|...                                                     .+..+.|.|..   .|.+
T Consensus        83 a~n~~~~~~-----------------------------------------------------~s~~~~l~V~~~~~~P~i  109 (218)
T 1uct_A           83 YRIGHYRFR-----------------------------------------------------YSDTLELVVTGLYGKPFL  109 (218)
T ss_dssp             EEETTTEEE-----------------------------------------------------ECCCEEEEEECSSCCCEE
T ss_pred             EEcCCCcee-----------------------------------------------------ecCCEEEEEcCcccCCEE
Confidence            666432110                                                     01112233321   1111


Q ss_pred             ecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC
Q psy15667        159 RLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR  238 (286)
Q Consensus       159 ~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~  238 (286)
                      ...+.                                       ..+.+|+.+.|.|.+. +.|.+.+.|+|+|..+...
T Consensus       110 ~~~p~---------------------------------------~~v~~G~~v~L~C~~~-~~~~~~~~W~k~g~~~~~~  149 (218)
T 1uct_A          110 SADRG---------------------------------------LVLMPGENISLTCSSA-HIPFDRFSLAKEGELSLPQ  149 (218)
T ss_dssp             EESSC---------------------------------------SEECTTCCCEEEEECS-SSCCSEEEEEETTCSSCCS
T ss_pred             EeCCC---------------------------------------CccCCCCCEEEEEeCC-CCCCCEEEEEECCCccccc
Confidence            11111                                       1245666677777432 4566889999999877542


Q ss_pred             CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-----ceeeEEEEEE
Q psy15667        239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-----QARYSSKLQV  285 (286)
Q Consensus       239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-----~~~~~~~L~V  285 (286)
                        .  . .......|.|.+++.+|+|.|+|.|.|...     ..+..+.|.|
T Consensus       150 --~--~-~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~s~~S~~~~l~V  196 (218)
T 1uct_A          150 --H--Q-SGEHPANFSLGPVDLNVSGIYRCYGWYNRSPYLWSFPSNALELVV  196 (218)
T ss_dssp             --E--E-ECSSSEEEECCSCCGGGCEEEEEEEECTTSTTEECCCCCCEEEEE
T ss_pred             --c--c-CCCccCEEEEccCCcccCEEEEEEEEcCCCCCcCCCCCCcEEEEE
Confidence              1  1 112356899999999999999999998632     3344556665

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.89  E-value=5.5e-21  Score=148.66  Aligned_cols=164  Identities=23%  Similarity=0.355  Sum_probs=104.8

Q ss_pred             ccccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      ..+.+|++++|.|.+.+.|.|  .+.|++++..|.......        .  ...|.|.  ..+|+|.|+|.|.|..   
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~~~l~~~~~~~--------~--~~~l~i~--~~~d~G~Y~C~~~n~~---   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALPG--------Q--KTEFKVD--SDDQWGEYSCVFLPEP---   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCCC--------S--EEEEEEC--GGGCCEEEEEEEESTT---
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeCCEEeecccccC--------C--cEEEEEe--chhhCeEEEEEEECCc---
Confidence            467899999999999988777  999999998876543221        0  1124455  5677777777776511   


Q ss_pred             EEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCC-ceEEec
Q psy15667         90 EITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIP-KVTAID  168 (286)
Q Consensus        90 ~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~-~~~~~~  168 (286)
                                                                             ...+.|.|...|.+...+ ...+..
T Consensus        73 -------------------------------------------------------~~~~~l~V~~~P~~~~~~~~~~~~~   97 (184)
T 3b5h_A           73 -------------------------------------------------------MGTANIQLHGPPRVKAVKSSEHINE   97 (184)
T ss_dssp             -------------------------------------------------------SCEEEEEECCSCCCEESCSEEEECT
T ss_pred             -------------------------------------------------------CcEEEEEEecCCceeecCCCcEEcC
Confidence                                                                   012334444444332222 223334


Q ss_pred             CCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCC-CCeEEEEe---CCe-eCCCC--CCc
Q psy15667        169 GEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLK---DGK-PLSPR--FPV  241 (286)
Q Consensus       169 g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p-~~~~~W~~---~g~-~~~~~--~~~  241 (286)
                      |+.+.|.|.+.                                        |.| .+.+.|+|   ++. .+...  .++
T Consensus        98 g~~~~l~C~~~----------------------------------------g~p~~~~i~W~~~~~~~~~~~~~~~~~~~  137 (184)
T 3b5h_A           98 GETAMLVCKSE----------------------------------------SVPPVTDWAWYKITDSEDKALMNGSESRF  137 (184)
T ss_dssp             TSCEEEEEECC----------------------------------------CSSCCCEEEEEECCSSSCEECCTTGGGTE
T ss_pred             CCcEEEEEEEC----------------------------------------CCCCCCeEEEEEcCCCCCEEeecCCCCEE
Confidence            45455555443                                        344 56777777   333 33222  233


Q ss_pred             eeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .+.. ......|.|.++. .+|+|.|+|.|.|..|....++.|.|+
T Consensus       138 ~~~~-~~~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  182 (184)
T 3b5h_A          138 FVSS-SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR  182 (184)
T ss_dssp             EEEE-ETTEEEEEECSCCTTTSSEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             EEEe-cCCeeEEEEeeccccccCceEEEEEEeCCCcceEEEEEEEe
Confidence            3332 2334689999999 999999999999999999999999885

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.88  E-value=5.4e-22  Score=157.59  Aligned_cols=204  Identities=20%  Similarity=0.263  Sum_probs=124.4

Q ss_pred             EeccccccccCCCcEEEEEEeecCC----CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ......+.+.+|++++|.|.+.+.|    .+.+.|++++..........+.   . .++.    .+........|.+.  
T Consensus         4 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~---~-~~~~----~~~~~~~~~~~r~~--   73 (214)
T 3jz7_A            4 TTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIIL---Y-SGDK----IYDNYYPDLKGRVH--   73 (214)
T ss_dssp             --CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEE---E-ETTE----EECCCCGGGTTTEE--
T ss_pred             ecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEE---E-eCCe----EccccCCccccceE--
Confidence            3344566889999999999999887    5699999865332211111110   0 0110    01110111112111  


Q ss_pred             EEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC
Q psy15667         82 AENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI  161 (286)
Q Consensus        82 a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~  161 (286)
                               +.            .++.    ......|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...|.+...
T Consensus        74 ---------~~------------~~~~----~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~-~~~~~l~V~~~p~~~~~  127 (214)
T 3jz7_A           74 ---------FT------------SNDV----KSGDASINVTNLQLSDIGTYQCKVKKAPGVA-NKKFLLTVLVKPSGTRC  127 (214)
T ss_dssp             ---------ES------------CSCG----GGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEECCCBSCEE
T ss_pred             ---------Ee------------ccCc----cCCcccEEEccCChhhCeEEEEEEEeCCCcc-ccEEEEEEEcCCCCcee
Confidence                     10            0000    0123568999999999999999998887754 44566776544422110


Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      .                                      ....+.+|+.+.|.|.+..+.|.+.+.|+|++.........
T Consensus       128 ~--------------------------------------~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~  169 (214)
T 3jz7_A          128 F--------------------------------------VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPW  169 (214)
T ss_dssp             E--------------------------------------EESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGG
T ss_pred             e--------------------------------------eecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccc
Confidence            0                                      01125577888888887668888999999954322111111


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ..   ....+.|.|.++..+|+|.|+|.|.|.+|....++.|.|.
T Consensus       170 ~~---~~~~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~V~  211 (214)
T 3jz7_A          170 LA---EMTSPVISVKNASSEYSGTYSCTVQNRVGSDQCMLRLDVV  211 (214)
T ss_dssp             GG---GTTSSEEEECSCCGGGCEEEEEEEECSSCEEEEEEEECCB
T ss_pred             ee---ccCCCEEEEecCCHHHCEEEEEEEEcCCCcEEEEEEEEEe
Confidence            11   1124589999999999999999999999999999988773

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.88  E-value=1.3e-22  Score=161.31  Aligned_cols=200  Identities=14%  Similarity=0.161  Sum_probs=117.7

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCe---eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~---v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+.++++.+|++++|.|.+.+.|.+.   |.|+|++..+.....+..    . ....   ..+   .....|.+      
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~----~-~~~~---~~~---~~~~~~r~------   67 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALL----H-SKYG---LHV---SPAYEGRV------   67 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEE----E-TTTE---EEE---CGGGTTTE------
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEe----c-CCCC---eEe---CccccceE------
Confidence            45567899999999999999988764   899998866532211110    0 0000   000   00001111      


Q ss_pred             CCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce--ecCC
Q psy15667         85 RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV--RLIP  162 (286)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~--~~~~  162 (286)
                                       ......    .......|.|.++..+|+|.|.|.+.+..+........+.+...+..  ....
T Consensus        68 -----------------~~~~~~----~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  126 (218)
T 4frw_A           68 -----------------EQPPPP----RNPLDGSVLLRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGP  126 (218)
T ss_dssp             -----------------ECCSSC----CCTTBCCEEESSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECS
T ss_pred             -----------------EEeccc----ccCCeEEEEEeeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeee
Confidence                             110000    11234679999999999999999998865544333333333222111  1111


Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .                                       ..+.+|..+.+.|.+. +.|+|.+.|+|++..+.......
T Consensus       127 ~---------------------------------------~~~~~~~~~~~~c~~~-g~p~p~i~W~~~~~~~~~~~~~~  166 (218)
T 4frw_A          127 A---------------------------------------LEEGQGLTLAASCTAE-GSPAPSVTWDTEVKGTTSSRSFK  166 (218)
T ss_dssp             C---------------------------------------EETTCCSEEEEEEEEE-EBSCCEEEEEESSCCEEEEEEEE
T ss_pred             e---------------------------------------eeeeeccccceeeecc-CCcCceEEEEECCcccccCceEe
Confidence            1                                       1234566666666653 56667788888876554322111


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..........|.|..++.+|+|.|+|.|.|.+|.....+.|.|
T Consensus       167 ~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~g~~~~~~t~~v  209 (218)
T 4frw_A          167 HSRSAAVTSEFHLVPSRSMNGQPLTCVVSHPGLLQDQRITHIL  209 (218)
T ss_dssp             CSSSEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cCCcEEEEEEEEEeeCCHHhCeEEEEEEEeCCCCeEEEEEEEE
Confidence            1101112457999999999999999999999998877777765

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.88  E-value=1.4e-21  Score=152.96  Aligned_cols=176  Identities=15%  Similarity=0.235  Sum_probs=107.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.|...+.. .+.+|++++|.|.+.+. .+.+.|+|+|..+.... ...       .......|.|.+++.+|+|.|+|
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~-------~~~~~~~L~I~~v~~~D~G~Y~C   74 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPP-------ERINKVKFYIPDMNSRMAGQYSC   74 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSC-------TTCCEEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccC-------CCcceeEEEeCcCCcccCeEEEE
Confidence            6888887766 89999999999998764 47899999998764210 000       00111247788888888888888


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCc
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPY  157 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~  157 (286)
                      .+.|..+...                                                     .+..+.|.|..   .|.
T Consensus        75 ~~~~~~~~~~-----------------------------------------------------~s~~~~l~V~~~~~~p~  101 (188)
T 1oll_A           75 IYRVGELWSE-----------------------------------------------------PSNLLDLVVTEMYDTPT  101 (188)
T ss_dssp             EEEETTEECC-----------------------------------------------------CCCCEEEEEESCSCCCE
T ss_pred             EecCCCCCCC-----------------------------------------------------CCCceEEEecccCCCCe
Confidence            7766432110                                                     00112222211   111


Q ss_pred             eecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       158 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      +...+...                                       +.+|+.+.|.|.+.  .+++.+.|+|+|..+..
T Consensus       102 i~~~p~~~---------------------------------------v~~G~~v~L~C~~~--~~~~~~~w~k~g~~~~~  140 (188)
T 1oll_A          102 LSVHPGPE---------------------------------------VISGEKVTFYCRLD--TATSMFLLLKEGRSSHV  140 (188)
T ss_dssp             EEEESCSE---------------------------------------EETTCEEEEEEECS--SSCSEEEEEEESSSCEE
T ss_pred             EEECCCCc---------------------------------------cccCCEEEEEEEcC--CCCCEEEEEECCccccc
Confidence            11111112                                       34566666666643  23568899999876532


Q ss_pred             CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc---cceeeEEEEEE
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA---AQARYSSKLQV  285 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~---g~~~~~~~L~V  285 (286)
                      .    .. .......|.|.+++.+|+|.|+|.|.|..   ...+..+.|.|
T Consensus       141 ~----~~-~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V  186 (188)
T 1oll_A          141 Q----RG-YGKVQAEFPLGPVTTAHRGTYRCFGSYNNHAWSFPSEPVKLLV  186 (188)
T ss_dssp             E----EE-ECSSEEEEEEEECCGGGCEEEEEECEEETTEECCCCCCEEEEE
T ss_pred             c----cc-CCCceeEEEECCCCcCCCcEEEEEEEcCCCcCCCCCCcEEEEe
Confidence            1    11 12336789999999999999999999974   23344555655

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.88  E-value=2.1e-21  Score=153.39  Aligned_cols=74  Identities=14%  Similarity=0.313  Sum_probs=46.6

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |+.+.|.|.+ .|.|.|.+.|++++..+...   ......+....+.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       118 g~~v~l~C~~-~g~P~p~v~W~~~~~~~~~~---~~~~~~~~~~~~~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~v  191 (202)
T 3bp6_B          118 TGEVQLTCQA-RGYPLAEVSWQNVSVPANTS---HIRTPEGLYQVTSVLRLKPQPSRNFSCMFWNAHMKELTSAIIDP  191 (202)
T ss_dssp             TCCEEEEEEE-EEBSCCEEEETTCCSCCEEE---EEECTTSCEEEEEEEEECCCTTCCEEEEEEETTTTEEEEEEECC
T ss_pred             CCeEEEEEEc-cccCCceEEEEeCCCCccCc---eeeCCCCCEEEEEEEEEEcCCCCEEEEEEEcCCcccccEEEEEe
Confidence            4444444444 23455566666655533210   00111122345678899999999999999999999999988876

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.88  E-value=3e-21  Score=168.09  Aligned_cols=179  Identities=25%  Similarity=0.464  Sum_probs=135.2

Q ss_pred             ccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEE-cCCCCeeEeceEEecccceeEEEEEcccccCC-CeEEEEEEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFE-LPTNNRFVIGQFVSGHGDVISHVNISHVTVED-GGEYACVAEN   84 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~Y~C~a~n   84 (286)
                      ......+.+|++++|.|.+ .+.|.+.+.|++++.. +..+.++...    .++    .|.|.++..+| +|.|+|.|.|
T Consensus       122 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~----~l~i~~v~~~d~~G~Y~C~a~n  193 (404)
T 3p3y_A          122 NLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPITQDKRVSQG----HNG----DLYFSNVMLQDMQTDYSCNARF  193 (404)
T ss_dssp             CCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCCCCSSEEEC----TTS----CEEESSCCSGGGSSCBEEEEEC
T ss_pred             CCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccCCCCcEEEc----CCC----cEEEEeeeeccCCcceEEEEEe
Confidence            3345678999999999998 7899999999998754 4444454321    122    37899999999 5999999988


Q ss_pred             CCEEE---------EE-----------------------------------ecCCCCCeeEEEeeCCccCcCCC-----C
Q psy15667         85 RAGTC---------EI-----------------------------------TPYDSGPYLIAWFKDGRQIPGRT-----S  115 (286)
Q Consensus        85 ~~g~~---------~~-----------------------------------~~~~~~~~~~~W~~~g~~l~~~~-----~  115 (286)
                      ..|..         .+                                   ...+.+++.+.|+++|..+....     .
T Consensus       194 ~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~  273 (404)
T 3p3y_A          194 HFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENF  273 (404)
T ss_dssp             TTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEEEETTBCCCTTTEEEEGG
T ss_pred             ccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEEEECCEECCCCccccccc
Confidence            65421         11                                   00112346899999999875432     2


Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ...|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+... ....+..|+.+.|.|.+.|.|.|.+.|.+....
T Consensus       274 ~~~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~g~~  352 (404)
T 3p3y_A          274 NKALRITNVSEEDSGEYFCLASNKMGSI-RHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMVNGEP  352 (404)
T ss_dssp             GTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             CceEEEccCCHhHCEEEEEEEEeCCCcE-EEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCceEEEECCEe
Confidence            4689999999999999999999998875 45778888777665544 346778899999999999999999999986544


Q ss_pred             c
Q psy15667        195 I  195 (286)
Q Consensus       195 ~  195 (286)
                      +
T Consensus       353 ~  353 (404)
T 3p3y_A          353 L  353 (404)
T ss_dssp             G
T ss_pred             c
Confidence            3

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.88  E-value=1.2e-21  Score=170.11  Aligned_cols=176  Identities=22%  Similarity=0.395  Sum_probs=131.5

Q ss_pred             cccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         11 EQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+.+.+|+.+.|.|.+. +.|.+.+.|++++.++..+.+....    ...+   .|.|.+++.+|+|.|+|.|.|..+..
T Consensus       111 ~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~~~~~~~~~~~----~~~~---~L~I~~v~~~D~G~Y~C~a~n~~~~~  183 (384)
T 3kld_A          111 TVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYPSYQDNRRFVS----QETG---NLYIAKVEKSDVGNYTCVVTNTVTNH  183 (384)
T ss_dssp             CEEEEETCCEEECCCCCSEESCEEEEEEETTEECCCSSSEEEC----TTTC---CEEESSCCGGGCEEEEEEEEETTTTE
T ss_pred             ceeEEcCCCeEEecCCCCCCCCeEEEEEECCCCCEeeccEEEE----cCCC---cEEEeecCHHHCceEEEEEecccccc
Confidence            45788999999999754 5677899999999988655543321    1111   38899999999999999999865421


Q ss_pred             EE------------------------------------------ecCCCCCeeEEEee-CCccCcCC----CCcceEEEc
Q psy15667         90 EI------------------------------------------TPYDSGPYLIAWFK-DGRQIPGR----TSSTSLVIN  122 (286)
Q Consensus        90 ~~------------------------------------------~~~~~~~~~~~W~~-~g~~l~~~----~~~~~l~i~  122 (286)
                      .+                                          ...+.+.+.+.|+| ++..+...    .....|.|.
T Consensus       184 ~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~L~I~  263 (384)
T 3kld_A          184 KVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIP  263 (384)
T ss_dssp             EEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECTTSCEEEEC
T ss_pred             eeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecCCCcEEEEC
Confidence            10                                          00012346899999 55555432    234679999


Q ss_pred             cCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee-cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        123 PVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR-LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       123 ~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ++..+|+|.|+|.|.|..|.. .....|.|...|.+. ......+..|+.+.|.|.+.|.|.|.+.|.+....
T Consensus       264 ~v~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~g~~  335 (384)
T 3kld_A          264 NFQQEDAGSYECVAENSRGKN-VAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKNGDP  335 (384)
T ss_dssp             SCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             CCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEECCEE
Confidence            999999999999999999875 346788887666543 34457788999999999999999999999986533

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.88  E-value=3.1e-21  Score=152.77  Aligned_cols=36  Identities=28%  Similarity=0.464  Sum_probs=30.2

Q ss_pred             eeEeccccccc-cCCCcEEEEEEeecCCCCeeEEeeC
Q psy15667          4 ILTYSFIEQTL-QPGPAVSLKCIASGNPTPDIGWTLD   39 (286)
Q Consensus         4 ~~~~~~~~~~~-~~G~~~~l~C~~~g~p~p~v~W~~~   39 (286)
                      .|.+.+.+.++ .+|++++|.|.+.|.|.|.+.|+++
T Consensus         2 ~v~i~p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~   38 (202)
T 1vca_A            2 KIETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQ   38 (202)
T ss_dssp             EEEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEET
T ss_pred             eEEECCCCcEEEcCCCcEEEEEeecCCCCCeEEEECC
Confidence            45667777654 5999999999999999999999884

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.87  E-value=1e-20  Score=149.83  Aligned_cols=190  Identities=17%  Similarity=0.207  Sum_probs=121.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      |.+.+....+.+|++++|.|...+.|.+.+.|++++...... .+.  .+.. ....    ...  .....|.       
T Consensus         2 ~~i~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~-~i~--~~~~-~~~~----~~~--~~~~~~r-------   64 (208)
T 3r4d_A            2 VTIEAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDK-EIA--RFVP-NSNM----NFT--GQAYSGR-------   64 (208)
T ss_dssp             CEEEEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGG-EEE--EEEG-GGTE----EEE--CTTCCSS-------
T ss_pred             ccccCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccc-eEE--EEec-CCCc----ccc--Cccccce-------
Confidence            445566678999999999999888999999999876433211 110  0000 0000    000  0000000       


Q ss_pred             CCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCce
Q psy15667         85 RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV  164 (286)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~  164 (286)
                                      +..          .....|.|.++..+|+|.|+|.+.+..+........|.|...+.       
T Consensus        65 ----------------~~~----------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~-------  111 (208)
T 3r4d_A           65 ----------------EII----------YSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVT-------  111 (208)
T ss_dssp             ----------------EEE----------CTTSCEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEEECCCC-------
T ss_pred             ----------------eEE----------ecCCeEEEccccccCCeEEEEEEEcccCceeEEEEEEEeccCCC-------
Confidence                            111          12246999999999999999999987544334455666643211       


Q ss_pred             EEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceee
Q psy15667        165 TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  244 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~  244 (286)
                                        .|.+..           .+.. +.+|+.+.|.|.+. +.| +.+.|+++|..+....++.+.
T Consensus       112 ------------------~p~i~~-----------~~~~-~~~g~~v~l~C~~~-~~p-p~i~W~~~g~~l~~~~~~~~~  159 (208)
T 3r4d_A          112 ------------------QPFLQV-----------TNTT-VKELDSVTLTCLSN-DIG-ANIQWLFNSQSLQLTERMTLS  159 (208)
T ss_dssp             ------------------CCEEEE-----------SCSS-CCTTCCEEEEEECS-CTT-CEEEEEETTEECCCCSSEEEE
T ss_pred             ------------------CCEEec-----------CCce-EeeCCCEEEEEECC-CCC-CceEEEECCEeCCCCCCeEEc
Confidence                              011100           0012 66788888888875 344 799999999998766555443


Q ss_pred             ecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       245 ~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      ..   +..|.|.++..+|+|.|+|.|.|.+|...+
T Consensus       160 ~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s  191 (208)
T 3r4d_A          160 QN---NSILRIDPIKREDAGEYQCEISNPVSVRRS  191 (208)
T ss_dssp             TT---TTEEEESSCCGGGCEEEEEEEECTTCCEEC
T ss_pred             CC---CCEEEEeccCHHhCeEEEEEEecCCCcccC
Confidence            22   368999999999999999999999997554

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.87  E-value=2.5e-21  Score=154.14  Aligned_cols=197  Identities=14%  Similarity=0.219  Sum_probs=115.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+ .+.+.+|++++|.|.+.+.|.+.+.|+|+...  ....+...    ...         .......+.|.-  
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~--~~~~~~~~----~~~---------~~~~~~~~r~~~--   63 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAG--QAPVLVIY----EDN---------RRPSGIPDHFSG--   63 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTT--SCCEEEEB----TTT---------BCCTTSCTTEEE--
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCC--CCcEEEEE----ECC---------ccCCCccCcEEE--
Confidence            5566566 78999999999999999999999999984210  00111000    000         000000111110  


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc--eeeeeeEEEEcC----CC
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGG----LP  156 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~--~~~~~~~l~v~~----~~  156 (286)
                                         .  .       ......|.|.++..+|+|.|+|.+.|..+.  .......|.|..    .|
T Consensus        64 -------------------~--~-------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P  115 (213)
T 3mj8_L           64 -------------------S--N-------SGNMATLTISKAQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAP  115 (213)
T ss_dssp             -------------------E--E-------ETTEEEEEESSCCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCC
T ss_pred             -------------------E--e-------cCCEEEEEECCCChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCC
Confidence                               0  0       012356888888888888888888887662  223345566542    22


Q ss_pred             ceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeC
Q psy15667        157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL  235 (286)
Q Consensus       157 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~  235 (286)
                      .+...+.                                      ...+.+|+.+.|.|.+....|+ +.+.|+|+|..+
T Consensus       116 ~i~~~~~--------------------------------------~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l  157 (213)
T 3mj8_L          116 SVTLFPP--------------------------------------SSEELKTNQATLVCMINGFYPADVAVTWEADGTPI  157 (213)
T ss_dssp             EEEEECC--------------------------------------CHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEE
T ss_pred             eEEccCC--------------------------------------CcccccCCcEEEEEEeeceeCCCeEEEEEcCCccc
Confidence            1111100                                      0112256666777766543343 589999999887


Q ss_pred             CCCCCce--eeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        236 SPRFPVN--VSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       236 ~~~~~~~--~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .......  .....  .....|.|..+..+|+|.|+|.|.|..+....++.+
T Consensus       158 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  209 (213)
T 3mj8_L          158 TQGVKTTQPSKSDSKYMATSYLTMTADAWKSRNTFICKVTHGGNTVEKSLSP  209 (213)
T ss_dssp             CTTEEECCCEEETTEEEEEEEEEEESHHHHSCSCEEEEEEETTEEEEEEECC
T ss_pred             CCCcccCCcCccCCcEEEEEEEEEeHHHcCCCCEEEEEEEECCccEEeeecc
Confidence            5431100  00000  113568999999999999999999999887776643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.86  E-value=4.9e-21  Score=166.33  Aligned_cols=179  Identities=25%  Similarity=0.423  Sum_probs=133.8

Q ss_pred             ccccccccCCCcEEEEEEe-ecCCCCeeEEeeCC---EEcCC----CCeeEeceEEecccceeEEEEEcccccCCCe---
Q psy15667          8 SFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDG---FELPT----NNRFVIGQFVSGHGDVISHVNISHVTVEDGG---   76 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~---~~l~~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G---   76 (286)
                      .+.+..+.+|+.++|.|.+ .+.|.+.+.|++++   .+...    +.++..    ...+    .|.|.+++.+|+|   
T Consensus       106 ~~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~----~~~~----~L~i~~v~~~d~G~~~  177 (395)
T 1bih_A          106 KTHEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITA----GPDG----NLYFTIVTKEDVSDIY  177 (395)
T ss_dssp             EEEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEE----CTTS----CEEEEEECGGGCCSSE
T ss_pred             CCcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccccccccccEEE----cCCC----cEEEEEEeeccCCCce
Confidence            3446678899999999996 78999999999986   22211    233322    1122    3889999999999   


Q ss_pred             EEEEEEEcCCEEEE--E-----e-----------------------------------cCCCCCeeEEEeeCCccCcCCC
Q psy15667         77 EYACVAENRAGTCE--I-----T-----------------------------------PYDSGPYLIAWFKDGRQIPGRT  114 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~--~-----~-----------------------------------~~~~~~~~~~W~~~g~~l~~~~  114 (286)
                      .|+|.|.|..|...  .     .                                   ..+.+++.+.|+|||..+....
T Consensus       178 ~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~g~~~~~~~  257 (395)
T 1bih_A          178 KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNP  257 (395)
T ss_dssp             EEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCT
T ss_pred             EEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECCCcEEEEEEeccCCCCeEEEEECCEEcCCCC
Confidence            99999998766410  0     0                                   0012345689999998875321


Q ss_pred             ----------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCc--eEEecCCCEEEEeeEeeec
Q psy15667        115 ----------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPK--VTAIDGEGLSIKCPVAGYP  182 (286)
Q Consensus       115 ----------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~--~~~~~g~~~~l~c~~~~~p  182 (286)
                                ....|.|.++..+|+|.|+|.|.|..|......+.|.|..+|.+...+.  ..+..|+.+.|.|.+.|.|
T Consensus       258 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p  337 (395)
T 1bih_A          258 EDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLP  337 (395)
T ss_dssp             TSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEES
T ss_pred             ceeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECccc
Confidence                      1237999999999999999999999888655578888887777665443  5678999999999999999


Q ss_pred             CCeEEEEEcCCc
Q psy15667        183 IEEVHWEKVPPK  194 (286)
Q Consensus       183 ~~~v~w~~~~~~  194 (286)
                      .|.+.|.+....
T Consensus       338 ~p~v~W~~~g~~  349 (395)
T 1bih_A          338 APNVVWSHNAKP  349 (395)
T ss_dssp             CCCCEEEETTEE
T ss_pred             CCeeEEEECCEE
Confidence            999999986543

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.86  E-value=2.6e-21  Score=151.24  Aligned_cols=61  Identities=23%  Similarity=0.481  Sum_probs=51.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      +.+|+.+.|.|.+    |.|.+.|+|+|..+.....        ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       119 ~~~G~~v~l~C~~----p~p~i~W~k~g~~i~~~~~--------~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          119 SRGDGSVLLTCGL----TDKTIKWLKDGSIISPLNA--------TKNTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CSSSCEEEEECSS----SCSCEEEEETTEECCCSSC--------CSSCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             cCCCCeEEEEeeC----CCCeEEEEECCEECcccCC--------CcceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            5689999999976    7789999999998864321        25679999999999999999999999976

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.86  E-value=1.9e-20  Score=152.44  Aligned_cols=208  Identities=18%  Similarity=0.200  Sum_probs=114.6

Q ss_pred             EeccccccccCCCcEEEEEEeec---CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASG---NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g---~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      ...+.++.+.+|++++|.|.+.+   .|.+.+.|++++....   ...+.   .  ++    ....+....+.|      
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~---~~~~~---~--~~----~~~~~~~~~~~~------   67 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDR---STKVF---K--GN----YNWQGEGLGFVE------   67 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTE---EEEEE---E--EE----ECCCBTTBCCCT------
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCc---cEEEE---e--ec----cccccccccccc------
Confidence            33444678999999999999998   8899999999864321   11100   0  00    000000000000      


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcce----eeeeeEEEEcCC---
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV----AQGSAELQLGGL---  155 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~----~~~~~~l~v~~~---  155 (286)
                        ........+.         +++...+.. .....|.|.++.++|+|.|+|.+.|..+..    ....+.|.|...   
T Consensus        68 --~~~~~~~~~~---------~~~r~~~~~-~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~  135 (250)
T 2fbo_J           68 --SDSYKESFGD---------FLGRASVAN-LAAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPS  135 (250)
T ss_dssp             --TSEEEEECGG---------GTTTEECSC-TTSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCC
T ss_pred             --cccccccCCC---------cCceEEecc-CCcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCC
Confidence              0000000000         000011111 124579999999999999999999976642    123566777543   


Q ss_pred             CceecCC--ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe
Q psy15667        156 PYVRLIP--KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK  233 (286)
Q Consensus       156 ~~~~~~~--~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~  233 (286)
                      +.+....  ...+.+|+.+.|.|.+.+.                                        |.|.+.|+|++.
T Consensus       136 ~~~~~~~~~~~~v~~g~~v~L~C~~~g~----------------------------------------p~p~v~W~k~~~  175 (250)
T 2fbo_J          136 NNVHVSTAEVVQVDEGNDITMTCPCTDC----------------------------------------ANANVTWYTGPT  175 (250)
T ss_dssp             SCCEECCCSEEECCTTCCEEECCCEESC----------------------------------------TTCEEEEEEEEE
T ss_pred             CeEEEecCceEEecCCCcEEEEEEecCC----------------------------------------CCCeeEEEeCCC
Confidence            1221111  1223345555555554444                                        444556666655


Q ss_pred             eCCCCC----------------------CceeeecCCCeeeEEEcccCCCCCeEEEEEEEe---cccceeeEEEEEE
Q psy15667        234 PLSPRF----------------------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN---TAAQARYSSKLQV  285 (286)
Q Consensus       234 ~~~~~~----------------------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N---~~g~~~~~~~L~V  285 (286)
                      .+....                      ......  .....|.|.++..+|+|.|+|.|.|   ..|....++.|.|
T Consensus       176 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g~~~~~~~l~V  250 (250)
T 2fbo_J          176 FFENYETGTYQPLANKNQFGITWFSSEIAGRASF--SGARNLVIRAAKITDAGRVWCELATGQGELDADRSSTILKV  250 (250)
T ss_dssp             CSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEE--ETTTEEEECSCCGGGCEEEEEEEESSSSGGGEEEEEEEEEC
T ss_pred             cccccccCcceeEeccCCCCccccCceEeccccc--CCccEEEEecCCcccCEEEEEEecCCccccCccceeEEEeC
Confidence            443211                      011110  0135899999999999999999999   6667777777665

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.86  E-value=4.5e-21  Score=149.29  Aligned_cols=174  Identities=15%  Similarity=0.203  Sum_probs=108.0

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.+.+|++++|.|.+.+.|.+.+.|++++..+....          ....   +......  -.+           ....
T Consensus         5 v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~----------~~~~---~~~~~~~--~~~-----------r~~~   58 (184)
T 2ny1_B            5 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGN----------QGSF---LTKGPSK--LND-----------RADS   58 (184)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEE----------ETTE---EEECSCT--TGG-----------GEEC
T ss_pred             EEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEe----------cCce---EecCChh--hCC-----------cccc
Confidence            468899999999999999999999999975311000          0000   0000000  000           0000


Q ss_pred             ecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCC
Q psy15667         92 TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEG  171 (286)
Q Consensus        92 ~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~  171 (286)
                      .            .  ..+  ......|.|.++..+|+|.|+|.+.|..+     .+.|.|..   +...+...      
T Consensus        59 ~------------~--~~~--~~~~~~L~i~~v~~~D~G~Y~C~~~~~~~-----~~~l~V~~---~~~~~~~~------  108 (184)
T 2ny1_B           59 R------------R--SLW--DQGNFPLIIKNLKIEDSDTYICEVEDQKE-----EVQLLVFG---LTANSDTH------  108 (184)
T ss_dssp             C------------G--GGG--GGTBCCEEECSCCGGGCEEEEEEETTEEE-----EEEEEEEE---EEESSCSE------
T ss_pred             c------------c--ccc--cCCeEEEEEecCCHHHCEEEEEEEEcCCC-----cEEEEEEE---ecCCCCce------
Confidence            0            0  000  01124588888888888888888876532     23344421   11111112      


Q ss_pred             EEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCee
Q psy15667        172 LSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSS  251 (286)
Q Consensus       172 ~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~  251 (286)
                                                       +.+|+.+.|.|.+. +.|.+.+.|++++..+.           ....
T Consensus       109 ---------------------------------v~~g~~~~l~C~~~-~~p~~~v~W~~~~~~~~-----------~~~~  143 (184)
T 2ny1_B          109 ---------------------------------LLQGQSLTLTLESP-PGSSPSVQCRSPRGKNI-----------QGGK  143 (184)
T ss_dssp             ---------------------------------EETTCCEEEEEECC-TTCCCEEEEECTTSCEE-----------EESS
T ss_pred             ---------------------------------eecCCCEEEEEEcC-CCCCCEEEEEeCCCccc-----------cCce
Confidence                                             34566666666654 35788899998876431           1145


Q ss_pred             eEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        252 LLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       144 ~L~i~~v~~~d~G~Y~C~a~n~~~~~~~~~~l~V~  178 (184)
T 2ny1_B          144 TLSVSQLELQDSGTWTCTVLQNQKKVEFKIDIVVL  178 (184)
T ss_dssp             EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCcCCCeEEEEEEEECCceEEEEEEEEEE
Confidence            79999999999999999999999999999998873

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.86  E-value=4.3e-21  Score=166.36  Aligned_cols=208  Identities=22%  Similarity=0.333  Sum_probs=144.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC---CeeEEeeCCEEcCC-----CCeeEeceEEecccceeEEEEEcccccC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT---PDIGWTLDGFELPT-----NNRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~---p~v~W~~~~~~l~~-----~~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      +|.|...+.+..+.+|+.++|.|.+.+.|.   +.+.|++++..+..     +.++..    ...+    .|.|.+++.+
T Consensus       103 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~----~L~i~~v~~~  174 (388)
T 2v5m_A          103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLV----LPSG----ELHIREVGPE  174 (388)
T ss_dssp             CCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECSSSCBTTTEEE----CTTS----CEEESSCCGG
T ss_pred             ccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCcccccccCCCCcEEE----ccCC----cEEEecCCcc
Confidence            456666677778999999999999988653   78999999876632     233322    1122    3889999999


Q ss_pred             CC-eEEEEEEEcCCE-E---------EEEe-------c------------------------CCCCCeeEEEeeCCccCc
Q psy15667         74 DG-GEYACVAENRAG-T---------CEIT-------P------------------------YDSGPYLIAWFKDGRQIP  111 (286)
Q Consensus        74 D~-G~Y~C~a~n~~g-~---------~~~~-------~------------------------~~~~~~~~~W~~~g~~l~  111 (286)
                      |+ |.|+|.|.|..+ .         ..+.       +                        .+.+++.+.|+|++..+.
T Consensus       175 d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~  254 (388)
T 2v5m_A          175 DGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTT  254 (388)
T ss_dssp             GGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTSCEEECCCCEEESCCEEEEEEECTTSS
T ss_pred             ccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCCcEEEEEECCCCCCCEEEEEecCCCCc
Confidence            99 999999988642 1         1110       0                        001345799999865432


Q ss_pred             C--------C--CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEee
Q psy15667        112 G--------R--TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAG  180 (286)
Q Consensus       112 ~--------~--~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~  180 (286)
                      .        +  .....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+... ....+..|+.+.|.|.+.|
T Consensus       255 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g  333 (388)
T 2v5m_A          255 RKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGE-SVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTG  333 (388)
T ss_dssp             CEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEE
T ss_pred             ccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCce-eEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEecc
Confidence            1        1  124679999999999999999999999875 45678888766654433 3466788999999999999


Q ss_pred             ecCCeEEEEEcCCccccc--ccccCCCCCCCeEEEEEeee
Q psy15667        181 YPIEEVHWEKVPPKIESF--AFPFDGLPEGARTRVICGVT  218 (286)
Q Consensus       181 ~p~~~v~w~~~~~~~~~~--~~~~~~~~~g~~~~l~c~~~  218 (286)
                      .|.|.+.|.+....+...  ......+...+.....|.+.
T Consensus       334 ~p~p~i~W~~~g~~i~~~~~~L~i~~v~~~d~G~Y~C~a~  373 (388)
T 2v5m_A          334 NPIKTVSWMKDGKAIGHSESVLRIESVKKEDKGMYQCFVR  373 (388)
T ss_dssp             ECCCEEEEEETTEECSCCSSEEEESSCCGGGCEEEEEEEE
T ss_pred             ccCCeEEEEECCEECccCCCEEEEecCChhhCEEEEEEEE
Confidence            999999999965433211  01112234445556667653

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.86  E-value=4.1e-21  Score=148.75  Aligned_cols=112  Identities=15%  Similarity=0.265  Sum_probs=77.5

Q ss_pred             eEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667        118 SLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE  196 (286)
Q Consensus       118 ~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~  196 (286)
                      .|.|.++.++|+|.|+|.+.|..|.. ....+.|.|...+.                         .|.+..        
T Consensus        62 sL~I~~v~~~D~G~Y~C~~~n~~g~~~~~~~~~l~V~~~~~-------------------------~p~i~~--------  108 (176)
T 1hng_A           62 DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMVS-------------------------KPMIYW--------  108 (176)
T ss_dssp             CEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEEECCCC-------------------------CCEEEE--------
T ss_pred             cEEEcccccccCEEEEEEEEeCCCCEEEEEEEEEEEeCCCC-------------------------CCEEEe--------
Confidence            48889999999999999998887764 23345666543211                         011110        


Q ss_pred             ccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        197 SFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                                .+..+.|.|.+. |.|+|.+.|+|+|..+....            .+.|..+..+|+|.|+|.|.|.+|.
T Consensus       109 ----------~~~~v~L~C~~~-g~p~p~i~W~~~g~~l~~~~------------~~~i~~~~~~d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          109 ----------ECSNATLTCEVL-EGTDVELKLYQGKEHLRSLR------------QKTMSYQWTNLRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             ----------ETTTTEEEEECS-SCSSCEEEEEETTEEEEEES------------SSEEEEECSCCSSCEEEEEEETTEE
T ss_pred             ----------cCCcEEEEEEec-CCCCcEEEEEECCEECCCCC------------cEEEEEEEccCCeEEEEEEEecCCC
Confidence                      112356777654 55668999999998764321            2456688899999999999999999


Q ss_pred             eeeEEEEEE
Q psy15667        277 ARYSSKLQV  285 (286)
Q Consensus       277 ~~~~~~L~V  285 (286)
                      ....+.|.+
T Consensus       166 ~~~~~~l~~  174 (176)
T 1hng_A          166 ESEMEVVNC  174 (176)
T ss_dssp             EEEEECCCC
T ss_pred             ceecccccC
Confidence            988887754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.85  E-value=1.3e-20  Score=149.95  Aligned_cols=195  Identities=22%  Similarity=0.321  Sum_probs=113.1

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc-cCC--CeEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT-VED--GGEYAC   80 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D--~G~Y~C   80 (286)
                      .|...+..+.+.+|++++|.|.+.+.|.+.+.|+|++...  ...+.                +.... ..+  .+.|  
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~--~~~~~----------------~~~~~~~~~~~~~r~--   62 (213)
T 3d9a_L            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHE--SPRLL----------------IKYASQSISGIPSRF--   62 (213)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTS--CCEEE----------------EETTTEECTTSCTTE--
T ss_pred             eEEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCC--CcEEE----------------EEEcccccccccccE--
Confidence            3555677889999999999999999999999999863211  01110                00000 000  0111  


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCc
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPY  157 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~  157 (286)
                                           ....+       .....|.|.++..+|+|.|+|.+.|..+........|.|..   .|.
T Consensus        63 ---------------------~~~~~-------~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~  114 (213)
T 3d9a_L           63 ---------------------SGSGS-------GTDFTLSINSVETEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPT  114 (213)
T ss_dssp             ---------------------EEEEE-------TTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCE
T ss_pred             ---------------------EEEcC-------CCEEEEEECCCChhhCEEEEEeeecCCcceeCCCEEEEEecCCCCce
Confidence                                 00000       12246888888888888888888876654322234555532   121


Q ss_pred             eecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCC
Q psy15667        158 VRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLS  236 (286)
Q Consensus       158 ~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~  236 (286)
                      +...+.                                      .....+|+.+.|.|.+....|++ .+.|+|+|..+.
T Consensus       115 v~~~~~--------------------------------------~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~  156 (213)
T 3d9a_L          115 VSIFPP--------------------------------------SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQ  156 (213)
T ss_dssp             EEEECC--------------------------------------CHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEEC
T ss_pred             eEeECC--------------------------------------ChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCc
Confidence            111000                                      00112455666666665434444 789999998775


Q ss_pred             CC-CC-ceeeecCC----CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        237 PR-FP-VNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       237 ~~-~~-~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .. .. ........    ....|.|.++..+|+|.|+|.|.|..........+.
T Consensus       157 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~i~  210 (213)
T 3d9a_L          157 NGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFN  210 (213)
T ss_dssp             TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEEE
T ss_pred             ceeeecCCCccCCCCCEEEEEEEEEeccccCCCCEEEEEEEEccCCCceEEEec
Confidence            54 10 00000000    134899999999999999999999987765555554

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.85  E-value=3.1e-20  Score=147.55  Aligned_cols=194  Identities=22%  Similarity=0.333  Sum_probs=109.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      |.. +..+.+.+|++++|.|.+.+.|.+.+.|+|++..-  ...+.                +..    + +.+.    .
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~--~~~~~----------------~~~----~-~~~~----~   55 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQ--QPKLL----------------IYK----A-SNLA----S   55 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTS--CCEEE----------------EET----T-TEEC----T
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCC--CeEEE----------------EEc----c-cccc----C
Confidence            444 77789999999999999999999999999853110  00110                000    0 0000    0


Q ss_pred             CCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC---CceecC
Q psy15667         85 RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL---PYVRLI  161 (286)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~---~~~~~~  161 (286)
                              ..   +..+....       ......|.|.++.++|+|.|+|.+.|..+........|.|...   |.+...
T Consensus        56 --------~~---~~r~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~  117 (210)
T 1lk3_L           56 --------GV---PARFSGSG-------SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIF  117 (210)
T ss_dssp             --------TC---CTTEEEEE-------ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEE
T ss_pred             --------Cc---cccEEEEe-------cCCEEEEEECCCCHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEE
Confidence                    00   00000000       0122468888888888888888887765533222334555321   111110


Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCC-C
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPR-F  239 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~-~  239 (286)
                      +                                      +...+.+|+.+.|.|.+....|+ +.+.|+|+|..+... .
T Consensus       118 ~--------------------------------------~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~  159 (210)
T 1lk3_L          118 P--------------------------------------PSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVL  159 (210)
T ss_dssp             C--------------------------------------CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEE
T ss_pred             C--------------------------------------CchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCce
Confidence            0                                      00011256667777766543444 489999999887644 1


Q ss_pred             C-ceeeecCC----CeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        240 P-VNVSDLDS----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       240 ~-~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      . ........    ....|.|..+..+|+|.|+|.|.|.......+..
T Consensus       160 ~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~  207 (210)
T 1lk3_L          160 DSVTDQDSKDSTYSMSSTLSLTKADYESHNLYTCEVVHKTSSSPVVKS  207 (210)
T ss_dssp             EEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEE
T ss_pred             EccCCccCCCCCEEEEEEEEEChHHhccCCcEEEEEEecCCCCeeeee
Confidence            0 00000000    1237999999999999999999998775544443

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.85  E-value=5e-20  Score=145.58  Aligned_cols=77  Identities=19%  Similarity=0.214  Sum_probs=50.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+. ..+.+|++++|.|.+. .|.+.+.|+|||..+....+.  ... . .......|.|.+++.+|+|.|+|.
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~--~~~-~-~~~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRLI--GEH-H-DGVSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEEE--CEE-E-TTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEecc-CCCCEEEEEECCCcCCcceee--eec-C-CCCceEEEEeccCCcccCeEEEEe
Confidence            677776664 7889999999999997 478899999998765321110  000 0 011112466777777777777776


Q ss_pred             EEc
Q psy15667         82 AEN   84 (286)
Q Consensus        82 a~n   84 (286)
                      |.|
T Consensus        82 a~~   84 (201)
T 1nkr_A           82 GSV   84 (201)
T ss_dssp             EEB
T ss_pred             Eec
Confidence            655

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.85  E-value=3.1e-20  Score=148.12  Aligned_cols=204  Identities=15%  Similarity=0.162  Sum_probs=118.6

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCe---eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPD---IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~---v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .+.++.+..|++++|.|.+.+.|.+.   |.|+|++..+...  +      . ....   ..+......+..        
T Consensus         7 vp~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~--~------~-~~~~---~~~~~~~~~~~~--------   66 (225)
T 4fmk_A            7 VLPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAA--F------H-PSFG---VDFPNSQFSKDR--------   66 (225)
T ss_dssp             CCSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEE--E------E-TTTE---EECCCTTSCTTT--------
T ss_pred             eCCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEE--E------e-cccc---eeeccccccccc--------
Confidence            45667889999999999999887764   8899986443100  0      0 0000   111111111110        


Q ss_pred             CCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCce
Q psy15667         85 RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV  164 (286)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~  164 (286)
                                      ....+.............|.|.++..+|+|.|+|.+.|..+........+.+...+.....+  
T Consensus        67 ----------------~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~--  128 (225)
T 4fmk_A           67 ----------------LSFVRARPETNADLRDATLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEA--  128 (225)
T ss_dssp             ----------------EEECCCSCSCCSSCCBCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEE--
T ss_pred             ----------------eeeeccccccccccCcEEEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecc--
Confidence                            11111111111123456799999999999999999998766543333333333222111000  


Q ss_pred             EEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceee
Q psy15667        165 TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS  244 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~  244 (286)
                                                          .......++...+.|.+..+.|++.+.|++++..+.........
T Consensus       129 ------------------------------------~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~~~~~  172 (225)
T 4fmk_A          129 ------------------------------------QEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQEPGI  172 (225)
T ss_dssp             ------------------------------------CCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEEEECS
T ss_pred             ------------------------------------cceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcceEEe
Confidence                                                01224456667777777777888888898887644221111100


Q ss_pred             ecCC--CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        245 DLDS--FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       245 ~~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ....  ..+.|.|..+..+|+|.|+|.|.|.+|....++.++|
T Consensus       173 ~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          173 QAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             STTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEEC
T ss_pred             cCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEE
Confidence            0000  1346999999999999999999999987766555543

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.85  E-value=1.8e-18  Score=155.68  Aligned_cols=272  Identities=19%  Similarity=0.331  Sum_probs=160.8

Q ss_pred             ccccccccCCCcEEEEEEeecCCC----CeeEEeeC--CEEc----C------------CCCeeEeceEEecccceeEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPT----PDIGWTLD--GFEL----P------------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~----p~v~W~~~--~~~l----~------------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      .+..+++.+|++++|.|.+.+.+.    +.+.|+++  |..+    .            ...|+....  . ......+|
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~--~-~~~~~~sL   82 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISV--D-TSRNQFSL   82 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEe--c-CCCCEEEE
Confidence            456778999999999999987543    67999985  3211    0            023443211  0 11112469


Q ss_pred             EEcccccCCCeEEEEEEEcCCE-------------------EEEEe------c----C--------------------CC
Q psy15667         66 NISHVTVEDGGEYACVAENRAG-------------------TCEIT------P----Y--------------------DS   96 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~~g-------------------~~~~~------~----~--------------------~~   96 (286)
                      .|.+++.+|+|.|.|.+.+..+                   ...+.      |    .                    +.
T Consensus        83 ~I~~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~  162 (512)
T 1zvo_C           83 NLRSMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGY  162 (512)
T ss_pred             EECcCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEee
Confidence            9999999999999999987531                   01111      0    0                    00


Q ss_pred             -C-CeeEEEeeCCccCcC------CC------CcceEEEccCCCCCCeeEEEEEEcCCcceeeee----------eEEEE
Q psy15667         97 -G-PYLIAWFKDGRQIPG------RT------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGS----------AELQL  152 (286)
Q Consensus        97 -~-~~~~~W~~~g~~l~~------~~------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~----------~~l~v  152 (286)
                       + |..++|++++.....      ..      ..+.|.|.....+ +|.|+|.+.|..+......          ..+.+
T Consensus       163 ~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~-~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l  241 (512)
T 1zvo_C          163 HPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWR-QGEYKCVVQHTASKSKKEIFRWPESPKAQASSVP  241 (512)
T ss_pred             ecCceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcC-CceEEEEEEeCCCCceEEEecCCCCCCcCCEEEE
Confidence             1 237999997653210      00      1134788887777 9999999999877542211          01222


Q ss_pred             cC----------------------------------------------------CCceecC-Cc-eEEecCCCEEEEeeE
Q psy15667        153 GG----------------------------------------------------LPYVRLI-PK-VTAIDGEGLSIKCPV  178 (286)
Q Consensus       153 ~~----------------------------------------------------~~~~~~~-~~-~~~~~g~~~~l~c~~  178 (286)
                      ..                                                    .|.+... +. ..+..|+.++|.|.+
T Consensus       242 ~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v  321 (512)
T 1zvo_C          242 TAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFV  321 (512)
T ss_pred             eCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEE
Confidence            21                                                    1222111 11 234579999999999


Q ss_pred             eeecCC--eEEEEEcCCccc------------c-----------------------cccccC------------------
Q psy15667        179 AGYPIE--EVHWEKVPPKIE------------S-----------------------FAFPFD------------------  203 (286)
Q Consensus       179 ~~~p~~--~v~w~~~~~~~~------------~-----------------------~~~~~~------------------  203 (286)
                      .|.+++  .|.|.+....+.            .                       |.....                  
T Consensus       322 ~g~~P~~~~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~~~~~~~~~~~~~~  401 (512)
T 1zvo_C          322 VGSDLKDAHLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQRLMALREPAAQAP  401 (512)
T ss_pred             eceECCCeEEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCCceeEEeecCCCCC
Confidence            996443  899988422110            0                       000000                  


Q ss_pred             -----CCC----CCCeEE-EEEeeecCCCC-CeEEEEeCCeeCCCCCCc--eeeecCCC-----eeeEEEcccCCCCCeE
Q psy15667        204 -----GLP----EGARTR-VICGVTHGDPP-LTIRWLKDGKPLSPRFPV--NVSDLDSF-----SSLLSINSVSAAHSGE  265 (286)
Q Consensus       204 -----~~~----~g~~~~-l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~--~~~~~~~~-----~~~L~i~~v~~~d~G~  265 (286)
                           .+.    +|+.+. |.|.+....|+ ..+.|+|+|..+......  .+......     ...|.|.....+|.|.
T Consensus       402 ~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~dg~~~~~~s~L~v~~~~~~~~g~  481 (512)
T 1zvo_C          402 VKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQREVNTSGFAPARPPPQPGSTTFWAWSVLRVPAPPSPQPAT  481 (512)
T ss_pred             CCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCeECcCccccccceeECCCCCEEEEEEEEEECchhcCCCCe
Confidence                 000    367788 99998754554 478999999988653211  11111111     2356677777777999


Q ss_pred             EEEEEEecccceeeEEEE
Q psy15667        266 YTCVASNTAAQARYSSKL  283 (286)
Q Consensus       266 Y~C~a~N~~g~~~~~~~L  283 (286)
                      |+|.|.|........+..
T Consensus       482 YtC~v~h~~l~~~~~~~~  499 (512)
T 1zvo_C          482 YTCVVSHEDSRTLLNASR  499 (512)
T ss_pred             EEEEEEecCCCCceEEEE
Confidence            999999987654444443

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.85  E-value=8.2e-21  Score=150.60  Aligned_cols=74  Identities=20%  Similarity=0.368  Sum_probs=55.5

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEccc-CCCCCeEEEEEEEecccc-eeeEEEE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSV-SAAHSGEYTCVASNTAAQ-ARYSSKL  283 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N~~g~-~~~~~~L  283 (286)
                      +|+.+.|.|.   +.|.+.+.|+|+|..+.... ...+...   ++.|.|.++ ..+|+|.|+|.|.|..|. .+....|
T Consensus       127 ~G~~v~L~C~---g~p~p~i~W~k~~~~l~~~~~~~~~~~~---~~~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l  200 (204)
T 1sy6_A          127 SGTTVILTCP---QYPGSEILWQHNDKNIGGDEDDKNIGSD---EDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYL  200 (204)
T ss_dssp             ETTEEEEECS---CCCSSCEEEEETTEEESCCTTCTTEEEE---TTEEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEE
T ss_pred             cCCcEEEEcC---CCCCCceEEEECCEECCCccCCceEecC---CCEEEEeeCCccccCEEEEEEeccCCCCceeEEEEE
Confidence            5777777776   56778899999998875432 1222111   468999999 999999999999999996 3666667


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus       201 ~~~  203 (204)
T 1sy6_A          201 RAR  203 (204)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            664

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.84  E-value=4e-20  Score=160.01  Aligned_cols=178  Identities=22%  Similarity=0.347  Sum_probs=132.2

Q ss_pred             cccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcC--CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          9 FIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELP--TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~--~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .....+.+|+.++|.|.+ .+.|.+.+.|++++.++.  .+.+....    ...   ..|.|.+++.+|+|.|+|.|.|.
T Consensus       108 ~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~----~~~---~~L~i~~~~~~d~G~Y~C~~~n~  180 (382)
T 1cs6_A          108 RDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS----QTT---GNLYIAKTEASDLGNYSCFATSH  180 (382)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC----TTT---CCEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccccccCceEEEe----cCc---eEEEEEeeCcccCeeEEEEEEEc
Confidence            345578899999999985 467889999999987643  33443221    111   14889999999999999999886


Q ss_pred             CE----EE-----EEe----------c------------------------CCCCCeeEEEeeCCccCcCC--CCcceEE
Q psy15667         86 AG----TC-----EIT----------P------------------------YDSGPYLIAWFKDGRQIPGR--TSSTSLV  120 (286)
Q Consensus        86 ~g----~~-----~~~----------~------------------------~~~~~~~~~W~~~g~~l~~~--~~~~~l~  120 (286)
                      .|    ..     .+.          |                        ...+.+.+.|++++..+...  .....|.
T Consensus       181 ~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~~~~~~~~~~~~~~L~  260 (382)
T 1cs6_A          181 IDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLH  260 (382)
T ss_dssp             ETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCCSBSSSEEE
T ss_pred             cccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEEEEEccCCCCEEEEEECCcccccEEecCCcEEE
Confidence            52    11     000          0                        00123579999988876542  3457899


Q ss_pred             EccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       121 i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      |.++..+|+|.|+|.+.|..|.. ...+.|.|..+|.+.. .....+..|+.+.|.|.+.|.|.|.+.|.+....
T Consensus       261 i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~  334 (382)
T 1cs6_A          261 IQNVDFEDEGTYECEAENIKGRD-TYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQP  334 (382)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEE
T ss_pred             EccCChhhCEEEEEEEEcCCCeE-EEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEECCEE
Confidence            99999999999999999998875 4567888876665543 3456778999999999999999999999986533

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.84  E-value=1.8e-19  Score=145.86  Aligned_cols=35  Identities=23%  Similarity=0.310  Sum_probs=30.9

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD   39 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~   39 (286)
                      .|...+.++.+.+|++++|.|. .+.|.+.+.|+|+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~   36 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQ   36 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEE
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEE
Confidence            4566778889999999999999 7889999999986

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.84  E-value=6.8e-20  Score=149.92  Aligned_cols=198  Identities=22%  Similarity=0.317  Sum_probs=109.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      +|.|...+.++.+.+|++++|.|.+.+.|     .+.+.|+|++..-  ...+.                +........+
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~--~~~~~----------------~~~~~~~~~~   99 (254)
T 2c1o_A           38 ELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQ--SPKRL----------------IYLVSKLDSG   99 (254)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTS--CCEEE----------------EETTTEECTT
T ss_pred             ceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCC--CceEE----------------EEeccccCCC
Confidence            56677778888999999999999999988     4899999853110  00110                0000000000


Q ss_pred             EEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC--
Q psy15667         77 EYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG--  154 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~--  154 (286)
                                        .  +..+....       ......|.|.++..+|+|.|+|.+.|..+........|.|..  
T Consensus       100 ------------------~--~~r~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~  152 (254)
T 2c1o_A          100 ------------------D--PDRFTGSG-------SGTDFTLKISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRAD  152 (254)
T ss_dssp             ------------------C--CTTEEEEE-------ETTEEEEEESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCC
T ss_pred             ------------------c--cceEEEec-------CCCEEEEEECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCC
Confidence                              0  00011000       012246777888888888888888776443222223455432  


Q ss_pred             -CCceecC-CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeC
Q psy15667        155 -LPYVRLI-PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKD  231 (286)
Q Consensus       155 -~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~  231 (286)
                       .|.+... +...                                       ..+|+.+.|.|.+....|+ +.+.|+|+
T Consensus       153 ~~P~v~~~~~~~~---------------------------------------~~~g~~v~l~C~~~g~~p~~~~v~W~k~  193 (254)
T 2c1o_A          153 AAPTVSIFPPSSE---------------------------------------QLTSGGASVVCFLNNFYPKDINVKWKID  193 (254)
T ss_dssp             BCCEEEEECCCHH---------------------------------------HHHTTEEEEEEEEEEEBSSCCEEEEEES
T ss_pred             CCCeeEeecCChh---------------------------------------hccCCcEEEEEEEecccCCCcEEEEEEC
Confidence             1211110 0000                                       1134456666665432333 56889998


Q ss_pred             CeeCCCC--CCceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        232 GKPLSPR--FPVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       232 g~~~~~~--~~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      |..+...  .........    .....|.|.++..+|+|.|+|.|.|..........+
T Consensus       194 g~~l~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~  251 (254)
T 2c1o_A          194 GSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  251 (254)
T ss_dssp             SSEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSSCEEEEE
T ss_pred             CCcccCcceeccccccCCCCcEEEEEEEEeccccccCCCeEEEEEEcCCCCCcceEec
Confidence            8877544  101100000    014579999999999999999999998765444443

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.84  E-value=3.3e-20  Score=163.44  Aligned_cols=193  Identities=19%  Similarity=0.346  Sum_probs=127.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|..........+|+.++|.|.+.| .|.+ .|+|+|||..+...............+.  ....|.|.++..+|+|.
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  195 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  195 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEECCEEcCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCe
Confidence            677776555555557889999999987 7877 9999999999875422111000001111  12358999999999999


Q ss_pred             EEEEEEcCCEE--EE--Ee---------------------------cCCCC--CeeEEEeeC--CccCc-----------
Q psy15667         78 YACVAENRAGT--CE--IT---------------------------PYDSG--PYLIAWFKD--GRQIP-----------  111 (286)
Q Consensus        78 Y~C~a~n~~g~--~~--~~---------------------------~~~~~--~~~~~W~~~--g~~l~-----------  111 (286)
                      |+|.|.|..+.  ..  +.                           ..+.+  .+.+.|+|+  |+.+.           
T Consensus       196 Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~  275 (438)
T 1qgc_4          196 YTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTY  275 (438)
T ss_dssp             EEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCC
T ss_pred             EEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCc
Confidence            99999997653  11  10                           00112  357999997  54331           


Q ss_pred             --------CC--------CCcceEEEccCCCCCCeeEEEEEEcCCcc----eeeeeeEEEEcC----CCceec-CCceEE
Q psy15667        112 --------GR--------TSSTSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLGG----LPYVRL-IPKVTA  166 (286)
Q Consensus       112 --------~~--------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~----~~~~~~~l~v~~----~~~~~~-~~~~~~  166 (286)
                              .+        .....|.|.++..+|+|.|+|.|.|..+.    .......|.|..    .|.+.. .+...+
T Consensus       276 ~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~  355 (438)
T 1qgc_4          276 TYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAA  355 (438)
T ss_dssp             EECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGG
T ss_pred             eecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCccccc
Confidence                    11        11247999999999999999999984431    111235666653    233322 223345


Q ss_pred             ecCCCEEEEeeEeee-cCC-eEEEEEcCCc
Q psy15667        167 IDGEGLSIKCPVAGY-PIE-EVHWEKVPPK  194 (286)
Q Consensus       167 ~~g~~~~l~c~~~~~-p~~-~v~w~~~~~~  194 (286)
                      ..|+.++|.|.+.|. |.| .+.|.+....
T Consensus       356 ~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~  385 (438)
T 1qgc_4          356 AAASMVTLGCLVKGYFPEPVTVTWNSGSLS  385 (438)
T ss_dssp             CCSSEEEEEEEEESCBSSCCEEEEGGGTCC
T ss_pred             ccCCcEEEEEEeccccCCCcEEEEecCCCC
Confidence            679999999999997 887 8999886544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=1.4e-19  Score=147.21  Aligned_cols=75  Identities=11%  Similarity=0.135  Sum_probs=52.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.|...+.. ++.+|++|+|.|.+.+ +.+.+.|+|+|..+... .+..       .......|.|.+++.+|+|.|+|
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~-------~~~~~~~L~I~~v~~~DsG~Y~C   77 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPP-------ERINKVKFYIPDMNSRMAGQYSC   77 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSC-------TTCCEEEEEECSCCGGGCEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCcccccccccc-------CCcceeEEEecCCCcccCeEEEE
Confidence            6788877776 8999999999999875 45689999999876411 0000       00111247788888888888888


Q ss_pred             EEEcC
Q psy15667         81 VAENR   85 (286)
Q Consensus        81 ~a~n~   85 (286)
                      .+.|.
T Consensus        78 ~~~~~   82 (242)
T 1p6f_A           78 IYRVG   82 (242)
T ss_dssp             EEEET
T ss_pred             EEecC
Confidence            77653

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.84  E-value=8.9e-19  Score=145.32  Aligned_cols=162  Identities=28%  Similarity=0.486  Sum_probs=118.2

Q ss_pred             ccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCC--------CcceEEEccCCCCCCeeEEEEEEcCCcc
Q psy15667         71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT--------SSTSLVINPVGREDRGIYQCIARRSDGD  142 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~--------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~  142 (286)
                      ...+.-...|.+...           +++.+.|+|+|..+....        ....|.|.++..+|+|.|+|.+.|..|.
T Consensus        18 ~~G~~v~l~C~~~g~-----------p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~n~~g~   86 (284)
T 2rik_A           18 ALGESGTFKCHVTGT-----------APIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYASNVAGK   86 (284)
T ss_dssp             ETTCCEEEEEEEESS-----------SCCEEEEEETTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             cCCCcEEEEEEEEcC-----------CCCEEEEEECCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEEEECCce
Confidence            345566788877642           346899999999875421        2467999999999999999999998876


Q ss_pred             eeeeeeEEEEcCCCceecC--CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecC
Q psy15667        143 VAQGSAELQLGGLPYVRLI--PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG  220 (286)
Q Consensus       143 ~~~~~~~l~v~~~~~~~~~--~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~  220 (286)
                      . ...+.|.|..+|.+...  +...+.                                       +|+.+.|.|.+. |
T Consensus        87 ~-~~~~~l~V~~~p~~~~~~~~~~~v~---------------------------------------~g~~~~l~C~~~-g  125 (284)
T 2rik_A           87 D-SCSAQLGVQEPPRFIKKLEPSRIVK---------------------------------------QDEHTRYECKIG-G  125 (284)
T ss_dssp             E-EEEEEEEEECCCEEEECCCSEEEEE---------------------------------------TTCCEEEEEEEE-S
T ss_pred             E-EEEEEEEccCCCcccccCCCceEec---------------------------------------CCceEEEEEEEe-e
Confidence            4 45677877666543221  112233                                       455555555543 5


Q ss_pred             CCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       221 ~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .|.+.+.|+|++..+....+..+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       126 ~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  189 (284)
T 2rik_A          126 SPEIKVLWYKDETEIQESSKFRMSFV-ESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKV  189 (284)
T ss_dssp             SSCCEEEEEETTEECCCSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             eCCCEEEEEECCEECcCCCcEEEEEc-CCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEE
Confidence            57778899999998876655444332 23568999999999999999999999999998888876

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.83  E-value=6.3e-19  Score=140.92  Aligned_cols=130  Identities=15%  Similarity=0.249  Sum_probs=78.5

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI  195 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~  195 (286)
                      ...|.|.++..+|+|.|+|.+.| .+.. ...+.|.|..++...... .                               
T Consensus        79 ~~~L~I~~v~~~D~G~Y~C~~~~-~~~~-~~~~~l~V~~~~~~~~~~-~-------------------------------  124 (222)
T 3sbw_C           79 NAALQITDVKLQDAGVYRCMISY-GGAD-YKRITVKVNAPYNKINQR-I-------------------------------  124 (222)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEES-SSEE-EEEEEEEEEBCCCCCEEE-E-------------------------------
T ss_pred             EEEEEEcCcccccCeEEEEEEEe-CCCc-eeEEEEEEECCCCCCCce-e-------------------------------
Confidence            35799999999999999999998 4433 345667765433211000 0                               


Q ss_pred             cccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       196 ~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                            ...+.+|+.+.|.|.+. |.|.|.+.|+++ |..+........... ...-..+.+..+..+|.|.|+|.|.|.
T Consensus       125 ------~~~~~~g~~v~L~C~~~-g~P~p~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~~~~l~v~~~d~g~Y~C~a~n~  197 (222)
T 3sbw_C          125 ------LVVDPVTSEHELTCQAE-GYPKAEVIWTSSDHQVLSGKTTTTNSKREEKLFNVTSTLRINTTTNEIFYCTFRRL  197 (222)
T ss_dssp             ------EEEETTTTEEEEEEEEE-EBSCCEEEEEETTCCEECCEEEEEECC----CEEEEEEEEEECCTTCEEEEEEEET
T ss_pred             ------eeeecCCCcEEEEEEec-CCCCCeEEEEECCCceecCccceEEEcCCCCCEEEEEEEEEeccCCcEEEEEEEeC
Confidence                  00123455666666553 356677777777 444432211111111 011112223356689999999999999


Q ss_pred             ccceeeEEEEEEC
Q psy15667        274 AAQARYSSKLQVK  286 (286)
Q Consensus       274 ~g~~~~~~~L~V~  286 (286)
                      .|....++.|.|.
T Consensus       198 ~g~~~~~~~l~v~  210 (222)
T 3sbw_C          198 DPEENHTAELVIP  210 (222)
T ss_dssp             TTTEEEEEEEECC
T ss_pred             ccceeeEEEEEec
Confidence            9999999998873

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.83  E-value=2.4e-19  Score=142.56  Aligned_cols=74  Identities=20%  Similarity=0.432  Sum_probs=48.1

Q ss_pred             CCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCc-eeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        207 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV-NVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~-~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +|+.+.|.|.+....|+ ..+.|+|+|..+...... .... .+   .....|.|..+..+|+|.|+|.|.|.......+
T Consensus       129 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          129 STAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTEEEEEE
T ss_pred             cCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCCceeCCCCCEEEEEEEEEcHHHccCCCcEEEEEEeCCcceeee
Confidence            45566666666543444 388999999877543210 0011 11   113468899999999999999999997765444

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.83  E-value=5.6e-20  Score=151.38  Aligned_cols=222  Identities=16%  Similarity=0.257  Sum_probs=119.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEee---cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIAS---GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~---g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +.|...+.++.+.+|++++|.|.+.   +.|.+.+.|++++...........    . ....    .+..      +.| 
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~----~-~~~~----~~~~------~~~-   69 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLF----Y-YSNL----SVPT------GRF-   69 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEE----E-ETTE----EEEC------GGG-
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEE----E-cCCC----cccC------ccc-
Confidence            5567778888999999999999988   778889999997654332211100    0 0000    0000      000 


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcce-eeeeeEEEEcCCCce
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDV-AQGSAELQLGGLPYV  158 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~-~~~~~~l~v~~~~~~  158 (286)
                                      .  ..+.+..+     .......|.|.++..+|+|.|+|.+.+..+.. ......|.|...   
T Consensus        70 ----------------~--~r~~~~~~-----~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~---  123 (268)
T 3mj6_A           70 ----------------Q--NRSHLVGD-----TFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE---  123 (268)
T ss_dssp             ----------------T--TTEEECSC-----TTTTBCCEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC---
T ss_pred             ----------------c--CceEEeec-----CCCCEEEEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc---
Confidence                            0  01111110     11234679999999999999999999865443 223345554311   


Q ss_pred             ecCCceEEecCCCEEEEeeE---eeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC
Q psy15667        159 RLIPKVTAIDGEGLSIKCPV---AGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL  235 (286)
Q Consensus       159 ~~~~~~~~~~g~~~~l~c~~---~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~  235 (286)
                       ......+..|+.+.|.|.+   .+.|.+.+.|.+......         .  ....+...  .+.+..   +.......
T Consensus       124 -~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~---------~--~~~~~~~~--~~~~~~---~~~~~~~~  186 (268)
T 3mj6_A          124 -EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT---------E--EETVLSYD--SNMRSG---KFQSLGRF  186 (268)
T ss_dssp             -CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCS---------S--CEEEEEEE--TTSSSC---EEECSSTT
T ss_pred             -CCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCC---------c--ceeEEEec--CCCCcc---cccccccc
Confidence             1123556678888888887   444666666665221100         0  00000000  000000   00000000


Q ss_pred             CCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        236 SPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       236 ~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                        ..+..+.. .......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       187 --~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V  235 (268)
T 3mj6_A          187 --RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHV  235 (268)
T ss_dssp             --TTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             --ccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceEEEEEEEEE
Confidence              00111100 0122568999999999999999999999999999998887

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.83  E-value=3.8e-20  Score=147.12  Aligned_cols=127  Identities=19%  Similarity=0.345  Sum_probs=76.1

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCc-ceeeeeeEEEEcC----CCceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEE
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGG----LPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEK  190 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g-~~~~~~~~l~v~~----~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~  190 (286)
                      ..|.|.++..+|+|.|+|.+.|..+ ........|.|..    .|.+...+ ...                         
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~-------------------------  122 (211)
T 3tv3_L           68 ASLTVSGLQTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSE-------------------------  122 (211)
T ss_dssp             EEEEEESCCGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHH-------------------------
T ss_pred             EEEEECCCChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchh-------------------------
Confidence            4688888888888888888887765 2223345566542    22221111 111                         


Q ss_pred             cCCcccccccccCCCCCCCeEEEEEeeecCC-CCCeEEEEeCCeeCCCCCCce-eeecC----CCeeeEEEcccCCCCCe
Q psy15667        191 VPPKIESFAFPFDGLPEGARTRVICGVTHGD-PPLTIRWLKDGKPLSPRFPVN-VSDLD----SFSSLLSINSVSAAHSG  264 (286)
Q Consensus       191 ~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~~~-~~~~~----~~~~~L~i~~v~~~d~G  264 (286)
                                    +.+|+.+.|.|.+.... |.+.+.|+|+|..+....... .....    .....|.|..+..+|+|
T Consensus       123 --------------~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g  188 (211)
T 3tv3_L          123 --------------ELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHR  188 (211)
T ss_dssp             --------------HHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSSEEEEEEEEECHHHHHHSS
T ss_pred             --------------hhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCCceECCCCCEEEEEEEEEcHHHhCCCC
Confidence                          11355555555554322 357788999998775421100 00000    11256899999999999


Q ss_pred             EEEEEEEecccceeeEEE
Q psy15667        265 EYTCVASNTAAQARYSSK  282 (286)
Q Consensus       265 ~Y~C~a~N~~g~~~~~~~  282 (286)
                      .|+|.|.|..+....++.
T Consensus       189 ~Y~C~v~~~~~~~~~~~~  206 (211)
T 3tv3_L          189 SYSCQVTHEGSTVEKTVA  206 (211)
T ss_dssp             CEEEEEEETTEEEEEEEC
T ss_pred             eEEEEEEECCCCEEeecc
Confidence            999999999988776654

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.83  E-value=4.4e-20  Score=145.61  Aligned_cols=129  Identities=17%  Similarity=0.298  Sum_probs=82.1

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCccee----eeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVA----QGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV  191 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~----~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~  191 (286)
                      ...|.|.++..+|+|.|+|.+.|..|...    ...+.|.|...+.                         .|.+.-   
T Consensus        64 ~~~L~I~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~-------------------------~p~~~~---  115 (201)
T 1dr9_A           64 NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFP-------------------------TPSISD---  115 (201)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCTTSCEEEEEEEEEEEEECCCC-------------------------CCEEEE---
T ss_pred             CcEEEEecccchhCeEEEEEEEcCCCCccccccccEEEEEEcCCCC-------------------------CCceEe---
Confidence            35789999999999999999998765432    2344555533211                         011110   


Q ss_pred             CCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       192 ~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                                 .....|+.+.|.|.+..|.|.|.+.|+|+|..+............ ..-....+..+..+|.|.|+|.|
T Consensus       116 -----------~~~~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~v~~~d~g~Y~C~a  184 (201)
T 1dr9_A          116 -----------FEIPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDFNMTTNHSFMCLI  184 (201)
T ss_dssp             -----------EECSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEEETTSCEEEEEEE
T ss_pred             -----------ccCCCCCeEEEEEecCCccCCCEEEEEECCEECccccceEEecCCCcEEEEEEEEEEEecCCCEEEEEE
Confidence                       012347778888887667888899999999887644221111111 11112233556679999999999


Q ss_pred             EecccceeeEEEE
Q psy15667        271 SNTAAQARYSSKL  283 (286)
Q Consensus       271 ~N~~g~~~~~~~L  283 (286)
                      .|..|..+..+.+
T Consensus       185 ~n~~~~~s~~~~~  197 (201)
T 1dr9_A          185 KYGHLRVNQTFNW  197 (201)
T ss_dssp             EETTCCEEEEEEE
T ss_pred             ecCcceeeeEEec
Confidence            9999988777654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.83  E-value=2.8e-19  Score=142.17  Aligned_cols=197  Identities=19%  Similarity=0.259  Sum_probs=111.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+..+.+.+|++++|.|.+.+.|.+.+.|+|++..  ....+..    . ...        .......+.|.   
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~--~~~~~~~----~-~~~--------~~~~~~~~r~~---   63 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPG--KAPKLLI----Y-YTN--------KLADGVPSRFS---   63 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--SCCEEEE----E-TTT--------EECTTCCTTEE---
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCC--CCcEEEE----E-EcC--------cCCCCCCCcEE---
Confidence            6677778888999999999999999999999999985311  0011100    0 000        00000001111   


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc---CCCcee
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG---GLPYVR  159 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~---~~~~~~  159 (286)
                                        +.  .       ......|.|.++..+|+|.|+|.+.|..+........|.|.   ..|.+.
T Consensus        64 ------------------~~--~-------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~  116 (213)
T 3r06_A           64 ------------------GS--G-------SGRDSSFTISSLESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVS  116 (213)
T ss_dssp             ------------------EE--E-------ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEE
T ss_pred             ------------------Ee--c-------cCCEEEEEECCCCcccCEEEEEecccCCceEEcCCceEEEeccCCCceee
Confidence                              00  0       01235688888888888888888877654333334455552   122211


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR  238 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~  238 (286)
                      ..+.                                      ...+..|+.+.|.|.+....| .+.+.|+|+|..+...
T Consensus       117 ~~~~--------------------------------------~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~  158 (213)
T 3r06_A          117 IFPP--------------------------------------SSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDG  158 (213)
T ss_dssp             EECC--------------------------------------CHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             eeCC--------------------------------------CceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCc
Confidence            1100                                      011223555666666554333 4578899999877543


Q ss_pred             C--CceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        239 F--PVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       239 ~--~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .  ........    .....|.|.....+|+|.|+|.|.|..........
T Consensus       159 ~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~v~n~~~~~~~~~~  208 (213)
T 3r06_A          159 VLQSVTDQDSKDSTYSLSSTLSLTKADYERHNLYTCEVTHKTSTAAIVKT  208 (213)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEE
T ss_pred             eEeccCceeCCCCcEEEEEEEEeCHHHhccCCeEEEEEEecccCcceEEe
Confidence            1  00001100    01346888899999999999999998755444433

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.82  E-value=1.1e-19  Score=145.02  Aligned_cols=75  Identities=19%  Similarity=0.362  Sum_probs=47.1

Q ss_pred             CCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCc-eeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        207 EGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPV-NVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~-~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      .|+.+.|.|.+....|++ .+.|+|+|..+...... ......   .....|.|.....+|+|.|+|.|.|..|....++
T Consensus       135 ~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          135 KENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPTKEGNKFMASSFLHLTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEEC--------------CEEEEEEEEEEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             cCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCcccccCCcEEEEEEEEEeHHHccCCCeEEEEEEeCCCcccccc
Confidence            345666777665444555 88999999887542111 000000   0124588888889999999999999998776654

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.82  E-value=1.4e-18  Score=145.52  Aligned_cols=162  Identities=24%  Similarity=0.374  Sum_probs=114.6

Q ss_pred             ccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCC----------CcceEEEccCCCCCCeeEEEEEEcCC
Q psy15667         71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRT----------SSTSLVINPVGREDRGIYQCIARRSD  140 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~----------~~~~l~i~~v~~~d~G~Y~C~a~~~~  140 (286)
                      ...+.-...|.+..           .+.+.+.|+|+|..+....          ....|.|.++..+|+|.|+|.+.|..
T Consensus        17 ~~G~~v~l~C~~~g-----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~   85 (305)
T 2nzi_A           17 RYQSNATLVCKVTG-----------HPKPIVKWYRQGKEIIADGLKYRIQEFKGGYHQLIIASVTDDDATVYQVRATNQG   85 (305)
T ss_dssp             CTTCCEEEEEEEEC-----------SSCCEEEEEETTEECCCCSSSEEEEEETTTEEEEEESSCCGGGCSEEEEEEEETT
T ss_pred             eCCCcEEEEEEEeC-----------CCCCeEEEEECCEEcccCCCeEEEEECCCCEEEEEEccCChhhCeEEEEEEEcCC
Confidence            34456678888754           2346899999998875421          12379999999999999999999998


Q ss_pred             cceeeeeeEEEEcCCCceecC------CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEE
Q psy15667        141 GDVAQGSAELQLGGLPYVRLI------PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVI  214 (286)
Q Consensus       141 g~~~~~~~~l~v~~~~~~~~~------~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~  214 (286)
                      |.. ...+.|.|...|.+...      ....+..|+.+.|.|.+.+                                  
T Consensus        86 g~~-~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g----------------------------------  130 (305)
T 2nzi_A           86 GSV-SGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSG----------------------------------  130 (305)
T ss_dssp             EEE-EEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEE----------------------------------
T ss_pred             CCc-cceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECC----------------------------------
Confidence            865 45677777544332211      2234445555555555544                                  


Q ss_pred             EeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcc-cCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINS-VSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       215 c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~-v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                            .|.+.+.|+|++..+....++.+... .....|.|.+ +..+|+|.|+|.|.|..|....++.|.|
T Consensus       131 ------~p~p~i~W~~~~~~~~~~~~~~~~~~-~~~~~l~i~~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  195 (305)
T 2nzi_A          131 ------KPDPVITWQKGQDLIDNNGHYQVIVT-RSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV  195 (305)
T ss_dssp             ------ESCCEEEEEESSSBCCSSSSCEEEEC-SSEEEEEETTCCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ------CCCCEEEEEECCEECCCCCcEEEEEc-CCceEEEEecCCccCccEEEEEEEEeCCCceeeEEEEEE
Confidence                  45567778888877765555544332 2356889999 9999999999999999999999988876

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.82  E-value=8.6e-20  Score=146.05  Aligned_cols=130  Identities=23%  Similarity=0.408  Sum_probs=83.6

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC---CceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcC
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL---PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVP  192 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~  192 (286)
                      ...|.|.++..+|+|.|+|.+.+....  ...+.|.|...   |.+...+                              
T Consensus        71 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~--~~~~~l~V~~~~~~p~i~~~~------------------------------  118 (222)
T 4i0k_A           71 NASLRLQRVRVTDEGSYTCFVSIQDFD--SAAVSLQVAAPYSKPSMTLEP------------------------------  118 (222)
T ss_dssp             BCCEEECSCCGGGCSCEEEEEEECCCC--CCCCCCCCCBCCCCCEEECCC------------------------------
T ss_pred             eEEEEECCcccccCEEEEEEEEeCCCc--eEEEEEEEEcCCCCCcEEeCC------------------------------
Confidence            457999999999999999999875321  23344444322   1111111                              


Q ss_pred             CcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEE
Q psy15667        193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       193 ~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                               ...+.+|+.+.|.|.+..+.|.+.+.|++ ++..+.......... ....-..|.|.++..+|+|.|+|.|
T Consensus       119 ---------~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~v~~~d~G~Y~C~a  189 (222)
T 4i0k_A          119 ---------NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTSQMANERGLFDVHSVLRVVLGANGTYSCLV  189 (222)
T ss_dssp             --------------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEEEEECTTSCEEEEEEEEEECCTTCEEEEEE
T ss_pred             ---------CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCcceeEEcCCCCeEEEEEEEEEEeCCCCEEEEEE
Confidence                     12245677777777775677778888888 455443322111111 1122235789999999999999999


Q ss_pred             EecccceeeEEEEEEC
Q psy15667        271 SNTAAQARYSSKLQVK  286 (286)
Q Consensus       271 ~N~~g~~~~~~~L~V~  286 (286)
                      .|..|....++.|.|.
T Consensus       190 ~n~~g~~~~~~~l~V~  205 (222)
T 4i0k_A          190 RNPVLQQDAHGSVTIT  205 (222)
T ss_dssp             EETTTTEEEEEEEECC
T ss_pred             ECCCCCCceEEEEEEe
Confidence            9999999999999874

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.82  E-value=4.4e-19  Score=141.08  Aligned_cols=193  Identities=24%  Similarity=0.300  Sum_probs=107.1

Q ss_pred             eccccccccCCCcEEEEEEeecC-------CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGN-------PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~-------p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ..+.++.+.+|++++|.|.+.+.       +.+.+.|+|++.....  .+.+.   .....       ........|.+.
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~--~~~~~---~~~~~-------~~~~~~~~~r~~   72 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYY--AEVVA---TNNPD-------RRVKPETQGRFR   72 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGG--CCBSE---ESCTT-------SCBCTTTTTTEE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcc--cceEe---cCCcc-------cccCccccCceE
Confidence            34667789999999999998864       5789999998753210  00000   00000       000111122221


Q ss_pred             EEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCccee---eeeeEEEEcCCC
Q psy15667         80 CVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVA---QGSAELQLGGLP  156 (286)
Q Consensus        80 C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~---~~~~~l~v~~~~  156 (286)
                                 +..            +.     ......|.|.++..+|+|.|.|.+.+..+...   ...+.|.|...+
T Consensus        73 -----------~~~------------~~-----~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~  124 (214)
T 2zg1_A           73 -----------LLG------------DV-----QKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALI  124 (214)
T ss_dssp             -----------ECS------------CG-----GGTBCCEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCC
T ss_pred             -----------Eec------------cC-----CCCeEEEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCC
Confidence                       110            00     01224577777778888888887776542211   123445553321


Q ss_pred             ceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecC---CCCCeEEEEeCCe
Q psy15667        157 YVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG---DPPLTIRWLKDGK  233 (286)
Q Consensus       157 ~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~---~p~~~~~W~~~g~  233 (286)
                      .                         .|.+.         .    ...+.+|+.+.|.|.+...   .|+|.+.|+|++.
T Consensus       125 ~-------------------------~p~i~---------~----~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~~~~~  166 (214)
T 2zg1_A          125 E-------------------------KPDIH---------F----LEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNAL  166 (214)
T ss_dssp             C-------------------------CCEEC---------------CCCCTTCCEEEEEECTTCCSCSSCCEEEEESSTT
T ss_pred             C-------------------------CCcee---------c----CccccCCCeEEEEEEeccCCCCCCCceEEEeCCCC
Confidence            1                         01110         0    0125577778888876542   4789999999987


Q ss_pred             eCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        234 PLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       234 ~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .+....       ......|.|..+..+|+|.|+|.|.|..+....++.+.
T Consensus       167 ~~~~~~-------~~~~~~L~i~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~  210 (214)
T 2zg1_A          167 SPLDPE-------TTRSSELTLTPRPEDHGTNLTCQMKRQGAQVTTERTVQ  210 (214)
T ss_dssp             SSSCSS-------CCCSSEEEECCCTTCCSCEEEEEEECC----CCEEEEE
T ss_pred             ccCCCC-------ceeEEEEEEecccHHcCcEEEEEEEeCCCCcceEEEEE
Confidence            543211       12356899999999999999999999875544444433

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.82  E-value=3.2e-19  Score=140.14  Aligned_cols=180  Identities=18%  Similarity=0.220  Sum_probs=107.1

Q ss_pred             ccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+..+.+.+|++++|.|.+.+ .+.+.|.|++++..+.   .+.     .+..... .+.+     .| ..|.       
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~---~~~-----~~~~~~~-~~~~-----~~-~~~~-------   61 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLA---FIV-----PHETKSP-EIHV-----TN-PKQG-------   61 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEE---EEE-----CCSSSCC-EEEE-----CC-HHHH-------
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEE---EEe-----cccCCCC-ceee-----cC-cccc-------
Confidence            455678899999999999875 5667999999875441   000     0000000 0000     00 0000       


Q ss_pred             EEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEE
Q psy15667         87 GTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTA  166 (286)
Q Consensus        87 g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~  166 (286)
                      ++.            .       +.   ....|.|.++..+|+|.|+|.+.+..+.. ...+.|.|...+..        
T Consensus        62 ~R~------------~-------~~---~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V~~~~~~--------  110 (193)
T 2if7_A           62 KRL------------N-------FT---QSYSLQLSNLKMEDTGSYRAQISTKTSAK-LSSYTLRILRQLRN--------  110 (193)
T ss_dssp             TTE------------E-------EC---TTCCEEECSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCEE--------
T ss_pred             ccE------------E-------EC---CCeEEEECCCCcccCceEEEEEEecCCCe-EEEEEEEEEccCCC--------
Confidence            000            0       00   13568899999999999999998877653 23556666433210        


Q ss_pred             ecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCC-eEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee
Q psy15667        167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGA-RTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD  245 (286)
Q Consensus       167 ~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~-~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~  245 (286)
                                       |.+.-            ....+..|. .+.|.|.+..+.|.+.+.|+|+|..+..        
T Consensus       111 -----------------p~i~~------------~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~~g~~l~~--------  153 (193)
T 2if7_A          111 -----------------IQVTN------------HSQLFQNMTCELHLTCSVEDADDNVSFRWEALGNTLSS--------  153 (193)
T ss_dssp             -----------------EEEEE------------CCC---CSSEEEEEEEEEESCCTTCEEEEEETTEEEES--------
T ss_pred             -----------------CeEec------------CceeecCCCceEEEEEEEecCCCceEEEEEeCCEEcCC--------
Confidence                             00000            001122354 7888888875567899999999986522        


Q ss_pred             cCCCeeeEEEcccCCC-CCeEEEEEEEecccceeeEE
Q psy15667        246 LDSFSSLLSINSVSAA-HSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       246 ~~~~~~~L~i~~v~~~-d~G~Y~C~a~N~~g~~~~~~  281 (286)
                          ...|.|.....+ |+|.|+|.|.|.+|..+..+
T Consensus       154 ----~~~l~i~~~~~~~d~G~Y~C~a~N~~g~~s~~~  186 (193)
T 2if7_A          154 ----QPNLTVSWDPRISSEQDYTCIAENAVSNLSFSV  186 (193)
T ss_dssp             ----SSEEEEEECTTTCSCCEEEEEEEETTEEEEEEE
T ss_pred             ----CCeEEEEeccCcCCCCcEEEEEECCCCcccccc
Confidence                234666544454 89999999999999875543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.82  E-value=2.3e-19  Score=146.23  Aligned_cols=198  Identities=17%  Similarity=0.235  Sum_probs=111.2

Q ss_pred             CCeeE-eccccccccCCCcEEEEEEeecCCCCe-----eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          2 PPILT-YSFIEQTLQPGPAVSLKCIASGNPTPD-----IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         2 ~p~~~-~~~~~~~~~~G~~~~l~C~~~g~p~p~-----v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      +|.+. ..+..+.+.+|++++|.|.+.|.|.+.     +.|++++.....  ...+             +..   .  ..
T Consensus         2 ~~~v~v~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~--~~~~-------------~~~---~--~~   61 (248)
T 3pv7_A            2 DLKVEMMAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDK--EVKV-------------FEF---F--GD   61 (248)
T ss_dssp             CEEEECSTTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCC--EEEE-------------EEE---E--SS
T ss_pred             ceEEEEeCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCc--ceEE-------------EEe---c--CC
Confidence            34555 345566899999999999999998876     999987533211  1100             000   0  00


Q ss_pred             eEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCc---CCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE
Q psy15667         76 GEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIP---GRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  152 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~---~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v  152 (286)
                      .                        ..-++++..+.   .......|.|.++..+|+|.|+|.+.+..+.. .....|.|
T Consensus        62 ~------------------------~~~~~~~~~~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~-~~~~~L~V  116 (248)
T 3pv7_A           62 H------------------------QEAFRPGAIVSPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKA-QGTVQLEV  116 (248)
T ss_dssp             C------------------------EEESSTTCBCCHHHHTTTBCCEEESSCCGGGCEEEEEEEEETTEEE-EEEEEEEE
T ss_pred             c------------------------ccccCCceEEEeccCCCCcEEEEeCCCCHHHCeEEEEEEEeCCccc-eeEEEEEE
Confidence            0                        00111111111   11234679999999999999999999987654 34677777


Q ss_pred             cCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeC
Q psy15667        153 GGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKD  231 (286)
Q Consensus       153 ~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~  231 (286)
                      ...|.+...+...+..|..+.|.|.+.+                                       +.|.+ .+.|+|+
T Consensus       117 ~~~P~v~~~~~~~~~~~~~~~L~C~~~g---------------------------------------~~P~pi~v~W~k~  157 (248)
T 3pv7_A          117 VASPASRLLLDQVGMKENEDKYMCESSG---------------------------------------FYPEAINITWEKQ  157 (248)
T ss_dssp             EBCCEEEEECC--------CEEEEEEEE---------------------------------------EBSSCCEEEEEEE
T ss_pred             ecCCceEEecCCccccCCCcEEEEEEcc---------------------------------------EECCCeEEEEEEC
Confidence            7666554433333334444555555554                                       23444 5666666


Q ss_pred             CeeCCCCCC-------ceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        232 GKPLSPRFP-------VNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       232 g~~~~~~~~-------~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      |..+.....       .......    .....|.|.....+|.|.|+|.|.|..+....++.+
T Consensus       158 g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~n~~~~~~~~~~v  220 (248)
T 3pv7_A          158 TQKFPHPIEISEDVITGPTIKNMDGTFNVTSCLKLNSSQEDPGTVYQCVVRHASLHTPLRSNF  220 (248)
T ss_dssp             CSSSCSCEEECTTEEEEEEEECTTSCEEEEEEEECC--CCCTTCEEEEEEECTTCSSCEEEEE
T ss_pred             CccCCCccccccceeecccEECCCCCEEEEEEEEEcCccccCCCEEEEEEECCCCCCCcEEEE
Confidence            643321100       0000000    113568899999999999999999999864444333

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.82  E-value=5.2e-19  Score=144.30  Aligned_cols=38  Identities=21%  Similarity=0.286  Sum_probs=32.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG   40 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~   40 (286)
                      +.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|+.
T Consensus         5 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~   42 (250)
T 3esu_F            5 IVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQK   42 (250)
T ss_dssp             CCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEEC
Confidence            45666677788999999999999999999999999853

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.82  E-value=1.1e-18  Score=151.11  Aligned_cols=160  Identities=25%  Similarity=0.361  Sum_probs=113.0

Q ss_pred             CCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeC--CccCcCC-------------CCcceEEEccCCCCCCeeEEEEEE
Q psy15667         73 EDGGEYACVAENRAGTCEITPYDSGPYLIAWFKD--GRQIPGR-------------TSSTSLVINPVGREDRGIYQCIAR  137 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~--g~~l~~~-------------~~~~~l~i~~v~~~d~G~Y~C~a~  137 (286)
                      .+.-...|.+..           .+.+.+.|+|+  |..+...             .....|.|.++.++|+|.|+|.|.
T Consensus        15 G~~v~l~C~~~g-----------~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~   83 (389)
T 2jll_A           15 NGQVTLVCDAEG-----------EPIPEITWKRAVDGFTFTEGDKSLDGRIEVKGQHGSSSLHIKDVKLSDSGRYDCEAA   83 (389)
T ss_dssp             TSEEEEEEEEEC-----------SSCCEEEEEETTTTEEECC--CCSSSSEEEEECSSEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCeEEEEEEeec-----------ccCCeEEEEeCCCCceeccCcCCCCCeEEEeccCCcceEEEcccChhhCEEEEEEEE
Confidence            445577887764           23467999999  7766431             123579999999999999999999


Q ss_pred             cCCcceeeeeeEEEEcCCCceecCCce-EEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEe
Q psy15667        138 RSDGDVAQGSAELQLGGLPYVRLIPKV-TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICG  216 (286)
Q Consensus       138 ~~~g~~~~~~~~l~v~~~~~~~~~~~~-~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~  216 (286)
                      |..|.. ...+.|.|..+|.+...+.. .+..|+.+.|.|.+.                                     
T Consensus        84 n~~g~~-~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~-------------------------------------  125 (389)
T 2jll_A           84 SRIGGH-QKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVK-------------------------------------  125 (389)
T ss_dssp             CSSCEE-EEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEE-------------------------------------
T ss_pred             eCCCCc-ceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEE-------------------------------------
Confidence            998875 45778888665544333222 334455555555444                                     


Q ss_pred             eecCCCCCeEEEEeCCeeCCCCC--CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        217 VTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       217 ~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                         |.|.+.+.|+|+|..+....  ++.+.. ......|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus       126 ---g~p~~~i~W~~~g~~l~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v  192 (389)
T 2jll_A          126 ---SNPPASIHWRRDKLVLPAKNTTNLKTYS-TGRKMILEIAPTSDNDFGRYNCTATNHIGTRFQEYILAL  192 (389)
T ss_dssp             ---EESCCEEEEEETTEESSCTTCTTEEEEE-CSSCEEEEECCCSTTSSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             ---ecCCCeEEEEECCccCCcccCceEEEec-cCCEEEEEECCCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence               44567788888888876543  333322 233568999999999999999999999999888887765

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.81  E-value=1.2e-18  Score=139.34  Aligned_cols=81  Identities=20%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      +.+|+.+.|.|.+..+.|.| .+.|+|+|..+............  .....|.|.. ...|.|.|+|.|.|..|......
T Consensus       136 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~d~g~Y~C~a~n~~~~~~~~~  214 (219)
T 1c1e_H          136 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPS-SPRPSETVTCNVAHPASSTKVDK  214 (219)
T ss_dssp             SCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEESSSCEEEEEEEEEES-SSTTTSCCEEEEEEGGGTEEEEE
T ss_pred             cccCCeEEEEEEcccccCCCeEEEEEeCCcccceEecCCcccCCeEEEEEEEEEec-ccCCCCEEEEEEEeCCCCccEEE
Confidence            55778888888776546666 88999888764211000000001  0134688844 44467999999999999887777


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|.++
T Consensus       215 ~i~~~  219 (219)
T 1c1e_H          215 KIVPR  219 (219)
T ss_dssp             ECCCC
T ss_pred             ecCCC
Confidence            66553

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=9.4e-19  Score=143.56  Aligned_cols=32  Identities=22%  Similarity=0.426  Sum_probs=27.8

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD   39 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~   39 (286)
                      .+..+++.+|++++|.|.+.|.|  .+.+.|+|+
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~   39 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRH   39 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEE
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEe
Confidence            45667899999999999999885  689999986

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.81  E-value=6.2e-19  Score=141.73  Aligned_cols=204  Identities=18%  Similarity=0.270  Sum_probs=120.5

Q ss_pred             ccccccccCCCcEEEEEEeecCCC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+.+..+.+|+++.|.|.+.+.|. +.+.|++++..... ..+.. .            .+      ....|.-......
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~-~~~~~-~------------~~------~~~~~~~r~~~~~   65 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGAR-PRLAS-A------------EM------QGSELQVTMHDTR   65 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCC-CEEEE-E------------EE------ETTEEEEEECCCS
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCcee-EEEEe-c------------cc------cCCcccccccccc
Confidence            466778999999999999999985 89999987643211 01100 0            00      0112221111100


Q ss_pred             EEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEE
Q psy15667         87 GTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTA  166 (286)
Q Consensus        87 g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~  166 (286)
                              .. .+.+..          ...+.|.|.++..+|+|.|+|.+.+..+......+.|.|...|...       
T Consensus        66 --------~~-~~~~~~----------~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~-------  119 (231)
T 2pet_A           66 --------GR-SPPYQL----------DSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEAT-------  119 (231)
T ss_dssp             --------CC-SSCCEE----------CTTCCEEESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCC-------
T ss_pred             --------cc-cccccc----------CCCceEEEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCc-------
Confidence                    00 000000          0113389999999999999999988762233445666665443210       


Q ss_pred             ecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeE-EEEEeeecCCCCCeEEEEeCCeeCCCCC----Cc
Q psy15667        167 IDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGART-RVICGVTHGDPPLTIRWLKDGKPLSPRF----PV  241 (286)
Q Consensus       167 ~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~-~l~c~~~~~~p~~~~~W~~~g~~~~~~~----~~  241 (286)
                                        .+.  .        ......+.+|+.+ .|.|.+..+.|.+.+.|+|+|..+....    +.
T Consensus       120 ------------------~~~--~--------~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~  171 (231)
T 2pet_A          120 ------------------EVS--P--------NKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEG  171 (231)
T ss_dssp             ------------------EEE--E--------CCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSE
T ss_pred             ------------------EEe--c--------CCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccce
Confidence                              000  0        0012235578777 8899886678889999999999886544    33


Q ss_pred             eeeec---CC-----CeeeEEEcccCCCCCeEEEEEEEe-----cccc-eeeEEEEEE
Q psy15667        242 NVSDL---DS-----FSSLLSINSVSAAHSGEYTCVASN-----TAAQ-ARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~---~~-----~~~~L~i~~v~~~d~G~Y~C~a~N-----~~g~-~~~~~~L~V  285 (286)
                      .+...   ..     ....|.|.....+|+|.|+|.|.|     ..|. .+..+.|.|
T Consensus       172 ~~~~~~~~~~~g~~~~~~~L~i~~~~~dd~g~Y~C~a~n~~~~~~~~~~~s~~~~l~V  229 (231)
T 2pet_A          172 YMTSRTVREASGLLSLTSTLYLRLRKDDRDASFHCAAHYSLPEGRHGRLDSPTFHLTL  229 (231)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEECCGGGGGCEEEEEEEEECGGGCEEEEECCCEECCC
T ss_pred             eecceeEecCCCeEEEEEEEEEecchhhCCceEEEEEEcCCcccccccccccceEEEE
Confidence            32211   00     025688876666679999999999     5665 556666654

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.81  E-value=1.7e-18  Score=143.50  Aligned_cols=38  Identities=21%  Similarity=0.305  Sum_probs=33.4

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG   40 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~   40 (286)
                      +.|...+.++++.+|++++|.|.+.+.|.+.+.|+|++
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~   50 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQK   50 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEEC
Confidence            45667788889999999999999999999999999864

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.81  E-value=5.8e-18  Score=137.79  Aligned_cols=32  Identities=28%  Similarity=0.493  Sum_probs=27.7

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD   39 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~   39 (286)
                      .+..+.+.+|++++|.|.+.|.|  .+.+.|+|+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~   41 (247)
T 2ghw_B            8 QSGGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQ   41 (247)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ecCCEEEecCCcEEEEEEeccccCCCceEEEEEe
Confidence            44568899999999999999987  688999984

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.81  E-value=5.4e-19  Score=142.73  Aligned_cols=198  Identities=17%  Similarity=0.257  Sum_probs=112.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      +.+...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..  ....+..    ...+.         ......+.|.   
T Consensus        25 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~--~~~~~~~----~~~~~---------~~~~~~~r~~---   86 (237)
T 3sob_L           25 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPG--KAPKLLI----YSASF---------LYSGVPSRFS---   86 (237)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTT--SCCEEEE----ETTTE---------ECTTCCTTEE---
T ss_pred             ceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCC--CCCEEEE----Eeccc---------cCCCCCCcEE---
Confidence            3455567778999999999999999999999999985311  0011100    00000         0000001111   


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCcee
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPYVR  159 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~~~  159 (286)
                                        +.  .       ......|.|.++..+|+|.|+|.+.+..+........|.|..   .|.+.
T Consensus        87 ------------------~~--~-------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~  139 (237)
T 3sob_L           87 ------------------GS--G-------SGTDFTLTISSLQPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVF  139 (237)
T ss_dssp             ------------------EE--E-------ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEE
T ss_pred             ------------------EE--c-------CCCEEEEEECCCChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceE
Confidence                              00  0       012356888888888888888888776543222334455432   11111


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPR  238 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~  238 (286)
                      ..+                                      +...+.+|+.+.|.|.+..+.| .+.+.|+|+|..+...
T Consensus       140 ~~~--------------------------------------~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~  181 (237)
T 3sob_L          140 IFP--------------------------------------PSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGN  181 (237)
T ss_dssp             EEC--------------------------------------CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSS
T ss_pred             EeC--------------------------------------CChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCc
Confidence            000                                      0011223566777776665455 6789999999887642


Q ss_pred             C--CceeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        239 F--PVNVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       239 ~--~~~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .  ........    .....|.|..+..+|+|.|+|.|.|.......+..+
T Consensus       182 ~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~  232 (237)
T 3sob_L          182 SQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPVTKSF  232 (237)
T ss_dssp             EEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCEEEEE
T ss_pred             eeecccccccCCCcEEEEEEEEEcHHHccCCCcEEEEEeeCCCCCceeeee
Confidence            1  00000000    113568899999999999999999998765555444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.81  E-value=1.2e-18  Score=141.69  Aligned_cols=38  Identities=29%  Similarity=0.311  Sum_probs=33.5

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG   40 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~   40 (286)
                      +.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|+.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~   39 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQK   39 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEEC
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeC
Confidence            45677788889999999999999999999999999853

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.81  E-value=7.7e-18  Score=137.94  Aligned_cols=38  Identities=21%  Similarity=0.379  Sum_probs=32.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD   39 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~   39 (286)
                      ||.|...+..+++.+|++++|.|.+.+.  |.+.+.|+|.
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   45 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQ   45 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEE
Confidence            6778888888999999999999999883  6789999974

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.81  E-value=4.8e-19  Score=145.29  Aligned_cols=67  Identities=16%  Similarity=0.327  Sum_probs=46.1

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .+.+|+.+.|.|.+..  +++.+.|+|+|..+.................|.|.+++  |+|.|+|.|.|..
T Consensus       117 ~V~~G~~vtL~C~~~~--~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~l~I~~v~--D~G~Y~C~a~~~~  183 (257)
T 1b6u_A          117 TVLAGESVTLSCSSRS--SYDMYHLSREGEAHERRFSAGPKVNGTFQADFPLGPAT--HGGTYRCFGSFRD  183 (257)
T ss_dssp             TCBTTCEEEEEEECSS--CCSEEEEEETTSSCEECCBCBCCSSSCCBEEEEEEECC--SCEEEEEEEECSS
T ss_pred             ccCCCCEEEEEEeCCC--CCcEEEEEECCcccCcccccccccCCceeEEEEecccc--cCEEEEEEEEcCC
Confidence            3667888888887643  34689999999876432211111111235689999998  9999999999863

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.80  E-value=1.4e-18  Score=140.73  Aligned_cols=196  Identities=17%  Similarity=0.273  Sum_probs=105.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCC----CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccc---cCCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT---VEDG   75 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~---~~D~   75 (286)
                      +.|...+.+.++.+|++++|.|.+.+.|    .+.+.|+|++..-  ...+.                +....   ....
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~--~~~~~----------------~~~~~~~~~~~~   63 (240)
T 1moe_A            2 IVLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQ--PPKLL----------------IYRASNLESGIP   63 (240)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTS--CCEEE----------------EETTTEECTTCC
T ss_pred             CceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCC--CceEE----------------EEEecccCcCCC
Confidence            3566777888999999999999999998    7899999863110  00110                00000   0000


Q ss_pred             eEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC
Q psy15667         76 GEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL  155 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~  155 (286)
                      +.|.                     +  .+       ......|.|.++.++|+|.|+|.+.|..+......+.|.|...
T Consensus        64 ~r~~---------------------~--~~-------~~~~~~L~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~  113 (240)
T 1moe_A           64 VRFS---------------------G--TG-------SRTDFTLIIDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGG  113 (240)
T ss_dssp             TTEE---------------------E--EE-------ETTEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             ccEE---------------------E--Ee-------cCCeEEEEEcCCChhhCEEEEEEEccCCceeecCCEEEEEecC
Confidence            0110                     0  00       0112357777777777777777777764432223445665432


Q ss_pred             C-------ceecCCceEEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeE
Q psy15667        156 P-------YVRLIPKVTAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTI  226 (286)
Q Consensus       156 ~-------~~~~~~~~~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~  226 (286)
                      +       .+.......+.+|+.++|.|.+.+.|.  +.+.|.+..+..                          .+..+
T Consensus       114 ~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~--------------------------~~~~~  167 (240)
T 1moe_A          114 GSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQ--------------------------GLEWI  167 (240)
T ss_dssp             SCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--------------------------CCEEE
T ss_pred             CCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEEECCCC--------------------------CcEEE
Confidence            1       112223455667777888887777653  466676532100                          00000


Q ss_pred             EEEe--CCeeC---CCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        227 RWLK--DGKPL---SPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       227 ~W~~--~g~~~---~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ....  ++...   ....++.+... ......|.|.+++.+|+|.|+|.|.+
T Consensus       168 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~  219 (240)
T 1moe_A          168 GRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  219 (240)
T ss_dssp             EEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             EEEcccCCccccCccccccEEEEEcccCCEEEEEECcCCHHHCEEEEEEEEe
Confidence            0000  00000   00112332221 12346799999999999999999985

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.80  E-value=6.8e-20  Score=145.76  Aligned_cols=73  Identities=16%  Similarity=0.272  Sum_probs=47.2

Q ss_pred             CCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce-eeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        207 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN-VSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~-~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      +|+.+.|.|.+....|+ +.+.|+|+|..+....... .....   .....|.|.++..+|+|.|+|.|.|..+....
T Consensus       127 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~  204 (212)
T 1nfd_E          127 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEK  204 (212)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCC
T ss_pred             cCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCCceecCCCceEEEEEEEchhhcCCCCeEEEEEEeCCceEEE
Confidence            45556666655543344 7888999988775432110 00000   01346889999999999999999999876544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.80  E-value=2.7e-18  Score=140.72  Aligned_cols=37  Identities=24%  Similarity=0.378  Sum_probs=32.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~   39 (286)
                      +.|...+..+++.+|++++|.|.+.+.|.+.+.|+|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   40 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQ   40 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEE
Confidence            4566777788999999999999999999999999984

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.80  E-value=6.4e-19  Score=140.53  Aligned_cols=82  Identities=27%  Similarity=0.409  Sum_probs=61.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.| ..+.++.+.+|++++|.|.+.|.|.|.+.|+|||..|..+  .++.+..    .+ ....|.|.++..+|+|.|+
T Consensus        19 ~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g~~l~~~~~~~~~~~~----~~-~~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           19 APKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDGQLLPSSNYSNIKIYN----TP-SASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETTEESSCSSSCSEEEEE----ET-TEEEEEECCCSGGGCEEEE
T ss_pred             CCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECCeECCCCCCccEEEec----CC-CeeEEEEecCChhhCeEEE
Confidence            5777 4777788999999999999999999999999999998754  3333211    11 1235777888888888888


Q ss_pred             EEEEcCCEEE
Q psy15667         80 CVAENRAGTC   89 (286)
Q Consensus        80 C~a~n~~g~~   89 (286)
                      |.|.|..|..
T Consensus        93 C~a~n~~g~~  102 (215)
T 3mtr_A           93 CTAVNRIGQE  102 (215)
T ss_dssp             EEEECSSCEE
T ss_pred             EEEEECCCce
Confidence            8777766654

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.80  E-value=1.1e-18  Score=139.09  Aligned_cols=78  Identities=17%  Similarity=0.281  Sum_probs=50.6

Q ss_pred             CCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCc--eeeecC----CCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        207 EGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPV--NVSDLD----SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~--~~~~~~----~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      +|+.+.|.|.+....|++ .+.|+|+|..+......  ......    .....|.|..+..+|+|.|+|.|.|.......
T Consensus       128 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~  207 (216)
T 2xzc_L          128 KSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLSSPV  207 (216)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCSSCE
T ss_pred             cCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCcEEEEEEcCCCCCce
Confidence            356667777665444543 89999999887544100  000000    01237899999999999999999999866555


Q ss_pred             EEEEE
Q psy15667        280 SSKLQ  284 (286)
Q Consensus       280 ~~~L~  284 (286)
                      ...+.
T Consensus       208 ~~~i~  212 (216)
T 2xzc_L          208 TKSFN  212 (216)
T ss_dssp             EEEEE
T ss_pred             EEecc
Confidence            54443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.80  E-value=1.1e-18  Score=142.72  Aligned_cols=198  Identities=19%  Similarity=0.272  Sum_probs=107.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +.|...+..+.+.+|++++|.|.+.+.|     .+.+.|+|++..  ....+.                +...     +.
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~--~~~~~~----------------~~~~-----~~   91 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPG--QSPKLL----------------IYQV-----ST   91 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTT--SCCEEE----------------EETT-----TE
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCC--CCcEEE----------------EEcC-----Cc
Confidence            4455667778899999999999999988     689999986421  001110                0000     00


Q ss_pred             EEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC--
Q psy15667         78 YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL--  155 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~--  155 (286)
                      +     .        .....  .+....       ......|.|.++..+|+|.|+|.+.|..+........|.|...  
T Consensus        92 ~-----~--------~~~~~--r~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~  149 (252)
T 3bkj_L           92 R-----F--------SGVPD--RFSGSG-------SGTDFTLRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADA  149 (252)
T ss_dssp             E-----C--------TTCCT--TEEEEE-------ETTEEEEEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCB
T ss_pred             c-----c--------CCcCC--ceEEEc-------cCCEEEEEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCc
Confidence            0     0        00000  000000       0122467788888888888888887754422122234555321  


Q ss_pred             -CceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCe
Q psy15667        156 -PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGK  233 (286)
Q Consensus       156 -~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~  233 (286)
                       |.+...+.                                      ...+.+|+.+.|.|.+....|+ ..+.|+|+|.
T Consensus       150 ~P~v~~~~~--------------------------------------~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~  191 (252)
T 3bkj_L          150 APTVSIFPP--------------------------------------SSEQLTSGGASVVCFLNNFYPKDINVKWKIDGS  191 (252)
T ss_dssp             CCEEEEECC--------------------------------------CHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTE
T ss_pred             CcEEEEeCC--------------------------------------ChhhcCCCcEEEEEEEeeEeCCCcEEEEEECCe
Confidence             11111000                                      0001235566666665543444 3788999988


Q ss_pred             eCCCCCC--ceeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        234 PLSPRFP--VNVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       234 ~~~~~~~--~~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.....  ..... .+   .....|.|..+..+|+|.|+|.|.|..........+
T Consensus       192 ~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~p~~~~~  247 (252)
T 3bkj_L          192 ERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSF  247 (252)
T ss_dssp             EECSSEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCEEEEEEECTTCSSCEEEEE
T ss_pred             ecCCCeeeecCcccCCCCCEEEEEEEEEcchhccCCCeEEEEEEeCCCCCCeeEee
Confidence            7654300  00000 00   012468999999999999999999987665444433

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.79  E-value=1e-17  Score=136.42  Aligned_cols=37  Identities=19%  Similarity=0.335  Sum_probs=32.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~   39 (286)
                      +.|...+.++.+.+|++++|.|.+.+.|     .+.+.|+|+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~   43 (247)
T 1svz_A            2 ILMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQ   43 (247)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             CcEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEE
Confidence            3566678888999999999999999988     689999985

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.79  E-value=2.4e-18  Score=144.45  Aligned_cols=147  Identities=17%  Similarity=0.235  Sum_probs=108.9

Q ss_pred             CCeeEeccc-cccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFI-EQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~-~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +|.+..... ...+.+|+++.|.|.+. +.|.+.+.|++++..+....++.+..   ........|.|.+++.+|+|.|+
T Consensus       106 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~i~~~~~~~~~~---~~~~~~~~L~i~~~~~~d~G~Y~  182 (312)
T 2y23_A          106 FPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFNEKEIFEGPKYKMHI---DRNTGIIEMFMEKLQDEDEGTYT  182 (312)
T ss_dssp             SCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEETTEEECSSSSCEEEE---ETTTTEEEEEESCCCGGGCEEEE
T ss_pred             CCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEECCEECeeCCcEEEEE---ccCCCEEEEEEccCCcccCEeEE
Confidence            455555444 77899999999999999 89999999999999998777665422   11122356999999999999999


Q ss_pred             EEEEcCCEEEEE-------------------------------------------------ecCCCCCe-eEEEeeCCcc
Q psy15667         80 CVAENRAGTCEI-------------------------------------------------TPYDSGPY-LIAWFKDGRQ  109 (286)
Q Consensus        80 C~a~n~~g~~~~-------------------------------------------------~~~~~~~~-~~~W~~~g~~  109 (286)
                      |.|.|..+....                                                 .....+++ .+.|+|||..
T Consensus       183 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~C~~~~~p~~~~v~W~~~g~~  262 (312)
T 2y23_A          183 FQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYKDERE  262 (312)
T ss_dssp             EEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEEEEEESCCSSCEEEEEETTEE
T ss_pred             EEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEEEEEcCCCCCCEEEEeeCCEE
Confidence            998775332211                                                 01122344 8999999998


Q ss_pred             CcCC------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE
Q psy15667        110 IPGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL  152 (286)
Q Consensus       110 l~~~------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v  152 (286)
                      +...      .....|.|.++..+|+|.|+|.|.|..|... ..+.|.+
T Consensus       263 ~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~-~~~~l~i  310 (312)
T 2y23_A          263 ISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKDK-SRLKLVD  310 (312)
T ss_dssp             EEEECCC----CEEEEEECSCSGGGCEEEEEEEESTTCCEE-EEEEECS
T ss_pred             CCCCCcEEEECCEEEEEECcCCHHHCEEEEEEEEcCCCcee-eeeEEEe
Confidence            7521      1236899999999999999999999999763 4555544

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.79  E-value=1.5e-17  Score=138.20  Aligned_cols=155  Identities=22%  Similarity=0.442  Sum_probs=104.5

Q ss_pred             ccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEee-CCccCcCCC----------CcceEEEccCCCCCCeeEEEEEEcC
Q psy15667         71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFK-DGRQIPGRT----------SSTSLVINPVGREDRGIYQCIARRS  139 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~-~g~~l~~~~----------~~~~l~i~~v~~~d~G~Y~C~a~~~  139 (286)
                      ...+.-...|.+....          +.+.+.|++ ||..+....          ....|.|.++..+|+|.|+|.+.|.
T Consensus        15 ~~G~~v~l~C~~~~~~----------~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~   84 (291)
T 1qz1_A           15 SVGESKFFLCQVAGDA----------KDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAE   84 (291)
T ss_dssp             ETTCCEEEEEEESSCC----------SCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECT
T ss_pred             eCCCeEEEEEEeCCCC----------CCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcC
Confidence            4455667788765421          147899999 888775321          2357999999999999999999999


Q ss_pred             CcceeeeeeEEEEcCCCceecCC-ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeee
Q psy15667        140 DGDVAQGSAELQLGGLPYVRLIP-KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT  218 (286)
Q Consensus       140 ~g~~~~~~~~l~v~~~~~~~~~~-~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~  218 (286)
                      .|......+.|.|...|.+...+ ...+.+                                       |+.+.|.|.+.
T Consensus        85 ~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~---------------------------------------g~~v~l~C~~~  125 (291)
T 1qz1_A           85 DGTQSEATVNVKIFQKLMFKNAPTPQEFKE---------------------------------------GEDAVIVCDVV  125 (291)
T ss_dssp             TSCEEEEEEEEEEECCSEEEECCSSEEEET---------------------------------------TSCEEECCEEE
T ss_pred             CCCeeEEEEEEEeeccccccCCCCcccccC---------------------------------------CCeEEEEEEec
Confidence            87654556677776555433322 233444                                       44455555443


Q ss_pred             cCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        219 HGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       219 ~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                       +.|.+.+.|+|++..+.......+....  .+.|.|.++..+|+|.|+|.|.|..+..
T Consensus       126 -~~p~~~v~W~~~~~~~~~~~~~~~~~~~--~~~L~i~~~~~~d~G~Y~C~a~n~~~~~  181 (291)
T 1qz1_A          126 -SSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKTDEGTYRCEGRILARGE  181 (291)
T ss_dssp             -CSSCCEEEEEETTSCSSTTCCTTEEECT--TSCEEETTCCGGGCEEEEEEEEEGGGTE
T ss_pred             -cCCCCEEEEEECCEEcccCCCceEEEcc--CCcEEEccCccccCeEEEEEEEecCCCc
Confidence             4566778888888877543322222211  3579999999999999999999987543

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.78  E-value=1.8e-18  Score=143.90  Aligned_cols=144  Identities=26%  Similarity=0.440  Sum_probs=104.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +|.|...+....+.+|+.+.|.|.+.+.|.+.+.|++++..+..  +.++.+.    ..+    .|.|.+++.+|+|.|+
T Consensus        98 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~----~L~i~~v~~~d~G~Y~  169 (291)
T 2wim_A           98 KLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAML----ANN----NLQILNINKSDEGIYR  169 (291)
T ss_dssp             CCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CBCCCSSEEEC----TTS----CEEETTCCGGGCEEEE
T ss_pred             CcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccccCCceEEEc----cCC----CEEEEecchhhCEEEE
Confidence            45666666777899999999999999999999999999988753  3444321    112    3889999999999999


Q ss_pred             EEEEcCCE-EE-----EEe----c-------------------------CCCCCeeEEEeeCCccCcCC------CCcce
Q psy15667         80 CVAENRAG-TC-----EIT----P-------------------------YDSGPYLIAWFKDGRQIPGR------TSSTS  118 (286)
Q Consensus        80 C~a~n~~g-~~-----~~~----~-------------------------~~~~~~~~~W~~~g~~l~~~------~~~~~  118 (286)
                      |.|.|..+ ..     .+.    +                         .+.+++.+.|++||..+...      .....
T Consensus       170 C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~  249 (291)
T 2wim_A          170 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILKGSNTE  249 (291)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEETTEECCCTTTEEECSTTCE
T ss_pred             EEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEECCEECcCCccEEEcCCccE
Confidence            99988652 11     110    0                         01234679999999987642      23467


Q ss_pred             EEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667        119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  154 (286)
Q Consensus       119 l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~  154 (286)
                      |.|.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       250 L~i~~~~~~d~G~Y~C~a~N~~G~~-~~~~~l~v~~  284 (291)
T 2wim_A          250 LTVRNIINSDGGPYVCRATNKAGED-EKQAFLQVFV  284 (291)
T ss_dssp             EEEESCCSTTCEEEEEEEEETTEEE-EEEEEEEC--
T ss_pred             EEEeeCCcccCEEEEEEEEECCCce-eeeEEEEEEE
Confidence            9999999999999999999999976 4467776643

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.78  E-value=2.4e-18  Score=144.37  Aligned_cols=143  Identities=25%  Similarity=0.460  Sum_probs=103.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC---eeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN---RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~---~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      |.|...+....+.+|++++|.|.+.|.|.|.+.|++++..+....   ++..    . ..+   .|.|.+++.+|+|.|+
T Consensus       109 p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~----~-~~~---~L~i~~~~~~d~G~Y~  180 (304)
T 2yd9_A          109 PNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQ----L-RSG---ALQIESSEETDQGKYE  180 (304)
T ss_dssp             CEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEE----C-TTS---CEEECSCCGGGCEEEE
T ss_pred             CeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEe----C-CCe---EEEEccCCcccCEEEE
Confidence            778888888899999999999999999999999999999886432   2211    1 111   4889999999999999


Q ss_pred             EEEEcCCEEEE-------Ee-----c-----------------------CCCCCeeEEEeeCCccCcCCC--Ccc--eEE
Q psy15667         80 CVAENRAGTCE-------IT-----P-----------------------YDSGPYLIAWFKDGRQIPGRT--SST--SLV  120 (286)
Q Consensus        80 C~a~n~~g~~~-------~~-----~-----------------------~~~~~~~~~W~~~g~~l~~~~--~~~--~l~  120 (286)
                      |.|.|..|...       +.     |                       .+.+++.+.|++||..+....  ...  .|.
T Consensus       181 C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~L~  260 (304)
T 2yd9_A          181 CVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQGAEDLTPEDDMPVGRNVLE  260 (304)
T ss_dssp             EEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEEEEEETTEECSCSSSCCBSEEEEE
T ss_pred             EEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEEEEEECCEECCCcccccCCcEEEE
Confidence            99999887532       10     0                       011345799999999886432  223  366


Q ss_pred             EccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC
Q psy15667        121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP  156 (286)
Q Consensus       121 i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~  156 (286)
                      |.++  +|+|.|+|.|.|..|.. ...+.|.|...+
T Consensus       261 i~~~--~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  293 (304)
T 2yd9_A          261 LTDV--KDSANYTCVAMSSLGVI-EAVAQITVKSLP  293 (304)
T ss_dssp             ECSC--CSCEEEEEEEEETTEEE-EEEEEEC-----
T ss_pred             Eccc--ccCEEEEEEEEeCCCcE-EEEEEEEEecCc
Confidence            6554  79999999999999976 456777775443

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.78  E-value=3.7e-17  Score=134.02  Aligned_cols=130  Identities=16%  Similarity=0.204  Sum_probs=75.9

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcc----eeeeeeEEEEcCCCceecC-CceEEecCCCEEEEeeEeeecCC-----eE
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLGGLPYVRLI-PKVTAIDGEGLSIKCPVAGYPIE-----EV  186 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~----~~~~~~~l~v~~~~~~~~~-~~~~~~~g~~~~l~c~~~~~p~~-----~v  186 (286)
                      ..|.|.++.++|+|.|+|.+.|..|.    .......|.|...+.+... ....+.+|++++|.|.+.+.|.+     .+
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v  158 (256)
T 1nqb_A           79 AYMQLSSLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYL  158 (256)
T ss_dssp             EEEEECSCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCE
T ss_pred             EEEEECcCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccccccceEE
Confidence            46888888888888888888876542    1112345666554443322 23456667777777777665543     55


Q ss_pred             EEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC------------CCCCCceeeecCCCeeeEE
Q psy15667        187 HWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL------------SPRFPVNVSDLDSFSSLLS  254 (286)
Q Consensus       187 ~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~------------~~~~~~~~~~~~~~~~~L~  254 (286)
                      .|.+..                                      +|..+            ....++.+.. ......|.
T Consensus       159 ~W~k~~--------------------------------------~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~  199 (256)
T 1nqb_A          159 EWYLQK--------------------------------------PGQSPKLLIYKVSNRFSGVPDRFSGSG-SGTDFTLK  199 (256)
T ss_dssp             EEEEEC--------------------------------------TTSCEEEEEETTTEECTTCCTTEEEEE-ETTEEEEE
T ss_pred             EEEEEC--------------------------------------CCCCcEEEEEEeCCCCCccCCcEEEEc-cCCEEEEE
Confidence            555421                                      22211            0012222221 12356799


Q ss_pred             EcccCCCCCeEEEEEEEecccc-eeeEEEEEE
Q psy15667        255 INSVSAAHSGEYTCVASNTAAQ-ARYSSKLQV  285 (286)
Q Consensus       255 i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V  285 (286)
                      |.++..+|+|.|+|.|.|..+. ....+.|.|
T Consensus       200 I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V  231 (256)
T 1nqb_A          200 ISRVEAEDLGVYYCFQGSHVPYTFGGGTKLEI  231 (256)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             ECCCChHHCEEEEEEEccCCceEECCCEEEEE
Confidence            9999999999999999985321 222344555

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.78  E-value=3.7e-17  Score=133.61  Aligned_cols=35  Identities=29%  Similarity=0.485  Sum_probs=29.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC--CCeeEEeeC
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD   39 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~   39 (286)
                      +...+..+++.+|++++|.|.+.+.+  .+.+.|+|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~   40 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQ   40 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEe
Confidence            44567778999999999999998854  779999983

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.78  E-value=1.9e-17  Score=135.45  Aligned_cols=73  Identities=19%  Similarity=0.340  Sum_probs=46.4

Q ss_pred             ccccccccCCCcEEEEEEeecC--CCCeeEEeeCC--EEc----C--------CCCeeEeceEEecccceeEEEEEcccc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDG--FEL----P--------TNNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~--~~l----~--------~~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .+..+.+.+|++++|.|.+.+.  |.+.+.|+|++  ..+    .        ...|+....    .+ ....|.|.+++
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~-~~~~L~I~~v~   82 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSK----SG-TSASLAITGLQ   82 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE----ET-TEEEEEECSCC
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEc----cC-CEEEEEECCCC
Confidence            4556789999999999999987  88899999853  111    0        112332210    11 11246677777


Q ss_pred             cCCCeEEEEEEEcC
Q psy15667         72 VEDGGEYACVAENR   85 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~   85 (286)
                      .+|+|.|.|.+.|.
T Consensus        83 ~~DsG~Y~C~~~~~   96 (256)
T 3ux9_B           83 SEDEADYYCQVRDN   96 (256)
T ss_dssp             GGGCEEEEEEEEET
T ss_pred             hhhCEEEEEEEEEC
Confidence            77777777766653

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.78  E-value=2e-17  Score=130.52  Aligned_cols=71  Identities=17%  Similarity=0.251  Sum_probs=45.7

Q ss_pred             eeEeccccc--cccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          4 ILTYSFIEQ--TLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         4 ~~~~~~~~~--~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .|.+.+.+.  ++.+|++++|.|.+ +.|.|  .|.|.+.+..+   .+...    . .+  ...|.|.+++.+|+|.|.
T Consensus         7 ~~~V~pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l---~~~~~----~-~~--~~~L~I~~v~~~d~G~Y~   75 (210)
T 1gsm_A            7 PLQVEPPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL---GAVQS----D-TG--RSVLTVRNASLSAAGTRV   75 (210)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT---CCEEE----E-SS--EEEEEECSCCGGGCEEEE
T ss_pred             CEEEeCCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc---CcEEe----c-CC--ccEEEECccCcccCceEE
Confidence            355556655  89999999999999 89888  99999855444   11110    0 11  123566666666666666


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |.|.|.
T Consensus        76 C~a~n~   81 (210)
T 1gsm_A           76 CVGSCG   81 (210)
T ss_dssp             EEEEET
T ss_pred             EEEEeC
Confidence            666553

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.78  E-value=1.1e-18  Score=148.23  Aligned_cols=140  Identities=31%  Similarity=0.494  Sum_probs=103.4

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ..+.+|++++|.|.+.|.|.+.+.|++++..+....++..... . .+.  ..|.|.+++.+|+|.|+|.|.|..|....
T Consensus       133 ~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~-~-~~~--~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~  208 (334)
T 1ry7_B          133 LAVPAANTVRFRCPAAGNPTPSISWLKNGREFRGEHRIGGIKL-R-HQQ--WSLVMESVVPSDRGNYTCVVENKFGSIRQ  208 (334)
T ss_dssp             EEEETTCCEEEECCCCCSSCCEEECCBTTBCCCTTSSTTCCCC-C-TTT--TEEEECSCCGGGCCCEEEEEEETTEEEEE
T ss_pred             EEecCCCcEEEEEEccCCCCCeEEEEECCEECcccccccceec-c-cce--EEEEECCCCcccCEEEEEEEEeCCCCEEE
Confidence            5688999999999999999999999999998876544311010 0 111  25899999999999999999998875421


Q ss_pred             e------------c------------------------CCCCCeeEEEee----CCccCcCCC-----------------
Q psy15667         92 T------------P------------------------YDSGPYLIAWFK----DGRQIPGRT-----------------  114 (286)
Q Consensus        92 ~------------~------------------------~~~~~~~~~W~~----~g~~l~~~~-----------------  114 (286)
                      .            +                        .+.+++.+.|+|    ||..+....                 
T Consensus       209 ~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  288 (334)
T 1ry7_B          209 TYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDK  288 (334)
T ss_dssp             EEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCT
T ss_pred             EEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccc
Confidence            1            0                        012345799999    776653211                 


Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLP  156 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~  156 (286)
                      ....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|...+
T Consensus       289 ~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~~  329 (334)
T 1ry7_B          289 ELEVLSLHNVTFEDAGEYTCLAGNSIGFS-HHSAWLVVLPAE  329 (334)
T ss_dssp             TCCCEEECSCCTTSCSEEEEEEEESSCCE-EEEEEEEEECSC
T ss_pred             cccEEEEccCCHHHCEEEEEEEeCCCCeE-EEEEEEEEEECC
Confidence            01379999999999999999999999986 456778876543

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.78  E-value=1.6e-18  Score=145.86  Aligned_cols=173  Identities=20%  Similarity=0.250  Sum_probs=124.1

Q ss_pred             ccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCC------CCcceEEEccCCCCCCeeEEEEEEcCCccee
Q psy15667         71 TVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVA  144 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~  144 (286)
                      ...+.-...|.+.+.          .+.+.+.|+|||..+...      .....|.|.++..+|+|.|+|.+.|..|.. 
T Consensus        19 ~~G~~v~l~C~~~~~----------~p~~~v~W~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~-   87 (317)
T 2y25_A           19 TGECNVLLKCKVANI----------KKETHIVWYKDEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKDDRGKD-   87 (317)
T ss_dssp             ETTTEEEEEEEEESC----------CTTCEEEEEETTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEESSSCEE-
T ss_pred             CCCCeEEEEEEEcCC----------CCCCEEEEEECCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEECCCCcE-
Confidence            344555778876552          124689999999887632      123589999999999999999999988764 


Q ss_pred             eeeeEEEEcCCCcee-cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC
Q psy15667        145 QGSAELQLGGLPYVR-LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP  223 (286)
Q Consensus       145 ~~~~~l~v~~~~~~~-~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~  223 (286)
                      .....|.+...|.+. ......+..|+.+.|.|.+.                              ...|.|.+..+.|.
T Consensus        88 ~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~------------------------------~~~l~c~~~~~~p~  137 (317)
T 2y25_A           88 KSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAE------------------------------GIQLYSFVTYYVED  137 (317)
T ss_dssp             EEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSS------------------------------EEEEEEEBSSCCSS
T ss_pred             EEEEEEEEecCccccccCCceecccCCCeEEEeecc------------------------------ccEEEEEeccCCCC
Confidence            234444443322111 11123345788888888543                              35678888777899


Q ss_pred             CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       138 ~~i~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v  198 (317)
T 2y25_A          138 LKVNWSHNGSAIRYSDRVKTGVT-GEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSG  198 (317)
T ss_dssp             CEEEEEESSSBCCCCSSEEEEEC-SSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECH
T ss_pred             cEEEEEECCEECCCCCCeEEecc-CCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEee
Confidence            99999999999877666554432 23456999999999999999999999998888877753

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.78  E-value=1.6e-16  Score=130.01  Aligned_cols=36  Identities=17%  Similarity=0.351  Sum_probs=29.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD   39 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~   39 (286)
                      +....+..+++.+|++++|.|.+.+.  |.+.+.|+|.
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~   47 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQ   47 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEE
Confidence            33455677789999999999999984  4789999984

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.78  E-value=1.5e-18  Score=122.96  Aligned_cols=86  Identities=26%  Similarity=0.471  Sum_probs=75.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.|+|.|.|+|+|||..|..+.++.+..    .+ ....|.|.+++.+|+|.|+|
T Consensus        12 ~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g~~l~~~~~~~~~~----~~-~~~~L~I~~v~~~D~G~Y~C   86 (107)
T 3knb_B           12 SPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGGQQLAASERLSFPA----DG-AEHGLLLTAALPTDAGVYVC   86 (107)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEECCE----ET-TEEEEEESSCCGGGCEEEEE
T ss_pred             CCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECcccccceeeEEEee----cC-ceEEEEEecCChhhCEEEEE
Confidence            38999999999999999999999999999999999999999998888876532    22 23469999999999999999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .|.|..|....
T Consensus        87 ~a~N~~G~~~~   97 (107)
T 3knb_B           87 RARNAAGEAYA   97 (107)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCCEEEE
Confidence            99999997654

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.77  E-value=7.2e-19  Score=141.86  Aligned_cols=191  Identities=21%  Similarity=0.319  Sum_probs=87.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      +.+...+.++.+.+|++++|.|.+.+.|.+.+.|+|++..-  ...+.                +........+      
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~--~~~~~----------------~~~~~~~~~~------   79 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGE--PPRLL----------------ISDGNTLRPG------   79 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTS--CCEEE----------------ECTTSCBCTT------
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCC--CcEEE----------------EEcCCccCCC------
Confidence            44555677888999999999999999888899999863210  01110                1000000000      


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC---CCcee
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG---LPYVR  159 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~---~~~~~  159 (286)
                                 . ...  +       .+........|.|.++..+|+|.|.|.+.|..+........|.|..   .|.+.
T Consensus        80 -----------~-~~r--~-------~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~  138 (233)
T 3bqu_C           80 -----------V-PSR--F-------SSSGYGTDFVFTIENMLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVS  138 (233)
T ss_dssp             -----------S-CTT--C-------CCCEEEEEEEEC-----CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEE
T ss_pred             -----------C-Ccc--E-------EeeccCCEEEEEECCCCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEE
Confidence                       0 000  0       0000011236888888888888888888776543222223344432   12111


Q ss_pred             c-CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCC
Q psy15667        160 L-IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSP  237 (286)
Q Consensus       160 ~-~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~  237 (286)
                      . .+...                                       +.+|+.+.|.|.+....|+ +.+.|+|+|..+..
T Consensus       139 ~~~~~~~---------------------------------------~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~  179 (233)
T 3bqu_C          139 IFPPSSE---------------------------------------QLTSGGASVVCFLNNFYPKDINVKWKIDGSERQN  179 (233)
T ss_dssp             EECCCHH---------------------------------------HHHTTEEEEEEEEEEEBSSCEEEEEEEC-----C
T ss_pred             EeCCCHH---------------------------------------hhcCCceEEEEEEccccCCceEEEEEECCeeCCC
Confidence            1 00000                                       1135566666665543344 36888888887654


Q ss_pred             C-CC-ceeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        238 R-FP-VNVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       238 ~-~~-~~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      . .. ..... .+   .....|.|..+..+|+|.|+|.|.|.....
T Consensus       180 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  225 (233)
T 3bqu_C          180 GVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS  225 (233)
T ss_dssp             CEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCCEEEEEEEC---C
T ss_pred             CceEecCCccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCCc
Confidence            3 10 00000 00   113468899999999999999999986543

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.77  E-value=2.1e-18  Score=139.15  Aligned_cols=75  Identities=19%  Similarity=0.386  Sum_probs=51.8

Q ss_pred             CCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCc-eeee-cC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        207 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPV-NVSD-LD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~-~~~~-~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +|+.+.|.|.+....|+ +.+.|+|+|..+...... .... .+   .....|.|..+..+|+|.|+|.|.|..+....+
T Consensus       149 ~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~  228 (234)
T 2j6e_L          149 QANKATLVCLISDFFPGAVTVAWKADGAPVKAGVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKT  228 (234)
T ss_dssp             TTSCCCEEECCCBCSSCCCEEEEEETTEECCSSEEECCCCCCTTSCCBCCEEECCCGGGTTTSCCEEEEEEBTTBCCCEE
T ss_pred             cCCceEEEEEEEEEcCCceEEEEEECCEECCCCccccCceECCCCCEEEEEEEEECHHHcCCCCeEEEEEEeCCCceEEe
Confidence            46677888877654554 589999999987543110 0000 00   123568899999999999999999998876555


Q ss_pred             E
Q psy15667        281 S  281 (286)
Q Consensus       281 ~  281 (286)
                      +
T Consensus       229 ~  229 (234)
T 2j6e_L          229 V  229 (234)
T ss_dssp             E
T ss_pred             c
Confidence            4

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.77  E-value=1.9e-18  Score=137.08  Aligned_cols=70  Identities=19%  Similarity=0.338  Sum_probs=43.7

Q ss_pred             CCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceee-ecCC---CeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        207 EGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVS-DLDS---FSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~-~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +|+.+.|.|.+....|+ +.+.|+|+|..+......... ..++   ....|.|.....+|.|.|+|.|.|....
T Consensus       123 ~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~ytC~a~n~~l~  197 (207)
T 2vol_A          123 AKDKVSLTCMITDFFPEDITVEWESNGQPAENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  197 (207)
T ss_dssp             SSSEEEEEEEEEEEBSSCCEEEEEETTEECSCEEECCCEECTTSCEEEEEEEEEEHHHHSSCCEEEEEEECTTSG
T ss_pred             cCCceEEEEEEeeEECCCCEEEEEECCEeccCcccCCceECCCCCEEEEEEEEECHHHcCCCCEEEEEEECCCCC
Confidence            36667777766543444 488999999877532111111 1111   1234667777777899999999998653

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.77  E-value=8.7e-19  Score=140.28  Aligned_cols=44  Identities=16%  Similarity=0.230  Sum_probs=36.4

Q ss_pred             CCeeEecccccc--ccCCCcEEEEEEeecC---CC-CeeEEeeCCEEcCC
Q psy15667          2 PPILTYSFIEQT--LQPGPAVSLKCIASGN---PT-PDIGWTLDGFELPT   45 (286)
Q Consensus         2 ~p~~~~~~~~~~--~~~G~~~~l~C~~~g~---p~-p~v~W~~~~~~l~~   45 (286)
                      +|.+...+....  +.+|++++|.|.+.|.   |. +.|.|+|++..+..
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~   58 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVHT   58 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEECC
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCccccC
Confidence            677777777766  8999999999999987   43 79999999987753

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.77  E-value=1.2e-16  Score=130.90  Aligned_cols=32  Identities=22%  Similarity=0.461  Sum_probs=26.9

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD   39 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~   39 (286)
                      .+...++.+|++++|.|.+.+.|  .+.+.|++.
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   41 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQ   41 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEE
Confidence            44567799999999999999876  689999974

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.77  E-value=3.1e-17  Score=133.39  Aligned_cols=37  Identities=11%  Similarity=0.198  Sum_probs=32.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~   39 (286)
                      +.|...+..+++.+|++++|.|.+.+.|.+.+.|+|.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~   38 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQ   38 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEE
Confidence            3566677778999999999999999999999999983

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.77  E-value=7.6e-18  Score=141.90  Aligned_cols=152  Identities=20%  Similarity=0.254  Sum_probs=108.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +|.+........+..|+.+.|.|.+. +.|.+.+.|++++..+....+.....  .+.......|.|.....+|+|.|+|
T Consensus       117 ~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~~~~~~~~~~~~--~~~~~~~s~l~i~~~~~~d~g~Y~C  194 (313)
T 4fqp_A          117 KPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFL--SGTVTVTSLWILVPSSQVDGKNVTC  194 (313)
T ss_dssp             CCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCCEEEEEEEECSS--TTCEEEEEEEEECCCGGGTTCEEEE
T ss_pred             CCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCccccccceeeeec--ccccccceeeeecccccccCeeEEE
Confidence            56677777777888999999999765 78999999999988775433322110  0011112358899999999999999


Q ss_pred             EEEcCCEE----EE------------Eec------------------CCCCCe-eEEEeeCCccCcCCC--CcceEEEcc
Q psy15667         81 VAENRAGT----CE------------ITP------------------YDSGPY-LIAWFKDGRQIPGRT--SSTSLVINP  123 (286)
Q Consensus        81 ~a~n~~g~----~~------------~~~------------------~~~~~~-~~~W~~~g~~l~~~~--~~~~l~i~~  123 (286)
                      .|.|..+.    ..            +.+                  .+.+++ .|.|+|+|..+....  ....|.|.+
T Consensus       195 ~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~~~~~l~~~~~~~~~~L~i~~  274 (313)
T 4fqp_A          195 KVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPTGYNWSTTMGPLPPFAVAQGAQLLIRP  274 (313)
T ss_dssp             EEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECC
T ss_pred             EEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCcEEEEEECCEECCCceEEeCCEEEECc
Confidence            99986431    11            110                  011234 689999999886532  346799999


Q ss_pred             CCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC
Q psy15667        124 VGREDRGIYQCIARRSDGDVAQGSAELQLGGLP  156 (286)
Q Consensus       124 v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~  156 (286)
                      +..+|+|.|+|.|.|..|.. ...+.|.|...|
T Consensus       275 v~~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~P  306 (313)
T 4fqp_A          275 VDKPINTTLICNVTNALGAR-QAELTVQVKEGP  306 (313)
T ss_dssp             CSSCCEEEEEEEEECSSCEE-EEEEEEEEECCC
T ss_pred             CChhhCEEEEEEEEeCCCcE-EEEEEEEEEeCC
Confidence            99999999999999999975 456778776544

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.77  E-value=1e-16  Score=133.18  Aligned_cols=35  Identities=26%  Similarity=0.424  Sum_probs=29.5

Q ss_pred             EeccccccccCCCcEEEEEEeecCC--CCeeEEeeCC
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG   40 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~   40 (286)
                      ...+..+.+.+|++++|.|.+.+.|  .+.+.|+|++
T Consensus        30 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~   66 (282)
T 1qok_A           30 LQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQG   66 (282)
T ss_dssp             EEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEEC
T ss_pred             EECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeC
Confidence            4566778899999999999999875  6899999864

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.76  E-value=3.4e-17  Score=134.84  Aligned_cols=38  Identities=18%  Similarity=0.301  Sum_probs=33.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC------CCeeEEeeC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP------TPDIGWTLD   39 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p------~p~v~W~~~   39 (286)
                      .+.|...+.++++.+|++++|.|.+.+.|      .+.+.|+|+
T Consensus         5 ~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~   48 (264)
T 2gjj_A            5 DIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQ   48 (264)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEE
T ss_pred             ccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEE
Confidence            46677788889999999999999999887      688999985

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.76  E-value=2.5e-18  Score=144.40  Aligned_cols=145  Identities=20%  Similarity=0.286  Sum_probs=102.2

Q ss_pred             ccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .+.......|+.+.|.|.+ .|.|.|.++|++++..+.........    ........|.|.++..+|+|.|+|.|.|..
T Consensus       120 ~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~~~~~----~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~  195 (308)
T 4fom_A          120 GPDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTTSFPN----ETATIISQYKLFPTRFARGRRITCVVKHPA  195 (308)
T ss_dssp             CSSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEEECTT----SCEEEEEEEEECCCGGGTTCEEEEEEECTT
T ss_pred             ccceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccceeee----ecccccccceEEeeeecCCccEEEEEEccC
Confidence            4445567789999999975 58999999999999887543222110    111123458999999999999999999865


Q ss_pred             EE----EEEe------c------------------------CCCCCe-eEEEeeCCccCcCCC---CcceEEEccCCCCC
Q psy15667         87 GT----CEIT------P------------------------YDSGPY-LIAWFKDGRQIPGRT---SSTSLVINPVGRED  128 (286)
Q Consensus        87 g~----~~~~------~------------------------~~~~~~-~~~W~~~g~~l~~~~---~~~~l~i~~v~~~d  128 (286)
                      +.    ..+.      |                        .+.+++ .+.|+|++..+....   ....|.|.++..+|
T Consensus       196 ~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~k~~~~~~~~~~~~~~~~l~i~~v~~~d  275 (308)
T 4fom_A          196 LEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWSRLDGQWPDGLLASDNTLHFVHPLTFNY  275 (308)
T ss_dssp             CSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECCBSSSCCCSSCBCSTTEEECCSCCCSCC
T ss_pred             CCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEEECCeECCCcEEEcCCeEEEECCCChhh
Confidence            42    1110      0                        001234 689999998876432   23456788999999


Q ss_pred             CeeEEEEEEcCCcceeeeeeEEEEcCCCc
Q psy15667        129 RGIYQCIARRSDGDVAQGSAELQLGGLPY  157 (286)
Q Consensus       129 ~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~  157 (286)
                      +|.|+|.|.|..|.. +.++.|.|..+|.
T Consensus       276 ~G~Y~C~A~N~~G~~-~~~~~l~V~~~P~  303 (308)
T 4fom_A          276 SGVYICKVTNSLGQR-SDQKVIYISDPPH  303 (308)
T ss_dssp             CSEEEEEEEETTEEE-EEEEECCEECCC-
T ss_pred             CEEEEEEEEeCCCcE-EEEEEEEEEcCCC
Confidence            999999999999976 4567788876653

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.76  E-value=2.4e-17  Score=130.79  Aligned_cols=76  Identities=17%  Similarity=0.175  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      +.+|+.+.|.|.+....|.| .+.|++++..+.......+....  .....|.|..+..+| |.|+|.|.|..|......
T Consensus       130 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  208 (210)
T 3d9a_H          130 AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDK  208 (210)
T ss_dssp             CCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEEGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cccCCcEEEEEEEeeEecCCcEEEEeeCCcccceEEcCCccCCCcEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCccccc
Confidence            45677777777776444666 88888888754211000011100  113568999998877 999999999999865543

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.76  E-value=3e-17  Score=131.39  Aligned_cols=207  Identities=17%  Similarity=0.138  Sum_probs=112.0

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+..+.+.+|++++|.|.+.+.|  .+.+.|+|++..  ....+..              .+..-..++...|.      
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~--------------~~~~~~~~~~~~~~------   63 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPG--KALEWLG--------------FIRNKANGYTTEYS------   63 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTT--SCCEEEE--------------EECCGGGTTCEEEC------
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCC--CCcEEEE--------------EEccCCcccccccC------
Confidence            45567899999999999999876  789999985311  0011110              01000000000110      


Q ss_pred             CEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc----eeeeeeEEEEcCCCceecC
Q psy15667         86 AGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD----VAQGSAELQLGGLPYVRLI  161 (286)
Q Consensus        86 ~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~----~~~~~~~l~v~~~~~~~~~  161 (286)
                             +..  ...+....++     ......|.|.++.++|+|.|.|.+.+..+.    .......|.|...+.    
T Consensus        64 -------~~~--~~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~----  125 (222)
T 1q9r_B           64 -------PSV--KGRFTISRDN-----SQSILYLQMNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKT----  125 (222)
T ss_dssp             -------TTT--BTTEEEEEET-----TTTEEEEEECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCC----
T ss_pred             -------ccc--CCceEEEEEC-----CCCeEEEEECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCC----
Confidence                   000  0011111111     012356888899999999999988876531    111234555532110    


Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~  240 (286)
                                          ..|.+.-.  +        +...+.+|+.+.|.|.+....|.| .+.|+++|..+.....
T Consensus       126 --------------------~~P~i~~~--~--------~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~  175 (222)
T 1q9r_B          126 --------------------TPPSVYPL--A--------PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF  175 (222)
T ss_dssp             --------------------BCCEEEEE--C--------CCSCCCCSSEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEEE
T ss_pred             --------------------CCCeEEEc--c--------ccccccCCCcEEEEEEEccEECCCCEEEEecCCeEcceEec
Confidence                                00111100  0        011245677777777776444666 8888888876532100


Q ss_pred             ceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        241 VNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ......+  .....|.|.++..+| |.|+|.|.|..|.......|.+
T Consensus       176 ~~~~~~~~~~~~s~L~i~~~~~~d-g~y~C~a~n~~~~~~~~~~i~~  221 (222)
T 1q9r_B          176 PAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVAHPASSTKVDKKIVP  221 (222)
T ss_dssp             EEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEECCC
T ss_pred             cccccCCcEEEEEEEEECchhcCC-CeEEEEEEccCCCCcEEEeccC
Confidence            0000000  113468999999999 9999999999998777766654

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.75  E-value=1.4e-17  Score=129.45  Aligned_cols=111  Identities=17%  Similarity=0.318  Sum_probs=72.7

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcceee-eeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcc
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGDVAQ-GSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI  195 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~-~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~  195 (286)
                      ++|.|.++.++|+|.|+|.+.|..|.... ..+.|.|....                         +.|.+.+       
T Consensus        66 gsL~I~~v~~~DsG~Y~c~~~n~~g~~~~~~~~~L~V~~~~-------------------------~~P~i~~-------  113 (182)
T 1hnf_A           66 GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKIQERV-------------------------SKPKISW-------  113 (182)
T ss_dssp             SCEEECSCCGGGCEEEEEEEEETTSCEEEEEEEEEEEECCC-------------------------CCCEEEE-------
T ss_pred             CCEEECCCChhhCEEEEEEEEeCCCceeEEEEEEEEEcCcC-------------------------CCCEEEE-------
Confidence            47899999999999999999887775422 34456654321                         0111111       


Q ss_pred             cccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       196 ~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                                 .+..+.|.|.+. +.|.+.+.|+++|..+ ...          ...|.+. ...+|+|.|+|.|.|.+|
T Consensus       114 -----------~~~~v~L~C~~~-~~p~~~~~W~~~g~~l-~~~----------~~~i~~~-~~~~d~G~Y~C~a~N~~~  169 (182)
T 1hnf_A          114 -----------TCINTTLTCEVM-NGTDPELNLYQDGKHL-KLS----------QRVITHK-WTTSLSAKFKCTAGNKVS  169 (182)
T ss_dssp             -----------ETTTTEEEEECS-SCSSCEEEEEESSCEE-EEE----------SSCEEEE-CCSCEEEEEEEEEECSSC
T ss_pred             -----------ccCcEEEEeEcc-CCCCCEEEEEECCEEC-CCC----------CcEEEEe-cccCCCcEEEEEEEeCCC
Confidence                       011356777664 4457889999999876 110          1233333 257899999999999999


Q ss_pred             ceeeEEEE
Q psy15667        276 QARYSSKL  283 (286)
Q Consensus       276 ~~~~~~~L  283 (286)
                      .......+
T Consensus       170 ~~~s~~~~  177 (182)
T 1hnf_A          170 KESSVEPV  177 (182)
T ss_dssp             EEEEEEEE
T ss_pred             CcEEccee
Confidence            88877665

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.75  E-value=4.3e-18  Score=119.01  Aligned_cols=85  Identities=25%  Similarity=0.514  Sum_probs=72.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.++.+.+|+++.|.|.+.|.|.|.|.|+|||..|..+.  ++.+..    .+ ....|.|.+++.+|+|.|+
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~   79 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGGRKIHSQEQGRFHIEN----TD-DLTTLIIMDVQKQDGGLYT   79 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETTEECCTTGGGTEEEEE----CS-SEEEEEESSCCGGGCEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECceEeeeeccceeeeec----cc-ceEEEEEcCCCccCCEEEE
Confidence            8999999999999999999999999999999999999999997543  443321    22 2346999999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|..+.
T Consensus        80 C~a~N~~G~~~~   91 (100)
T 3knb_A           80 LSLGNEFGSDSA   91 (100)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCCEEEE
Confidence            999999997654

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.75  E-value=5e-17  Score=133.33  Aligned_cols=209  Identities=13%  Similarity=0.109  Sum_probs=97.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ++|.|...+.++.+.+|++++|.|.+.+.|.+.+.|+|....  ....+..              ...  .......|  
T Consensus         1 ~s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~--~~~~~~~--------------~~~--~~~~~~~~--   60 (259)
T 3omz_A            1 MSSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEG--KAPQRLL--------------YYD--SYTSSVVL--   60 (259)
T ss_dssp             ----------CEEEETTCCEEEECCC-----CEEEEEEECTT--SCCEEEE--------------EEE--TTTCCEEE--
T ss_pred             CccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCC--CCcEEEE--------------EEe--cCcCcccc--
Confidence            478888899999999999999999999999999999984210  0111110              000  00000000  


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc--eeeeeeEEEEcCC---
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGGL---  155 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~--~~~~~~~l~v~~~---  155 (286)
                                 ..........  ..+     .......|.|.++.++|+|.|+|.+.|..+.  .......|.|...   
T Consensus        61 -----------~~~~~~r~~~--~~~-----~~~~~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~  122 (259)
T 3omz_A           61 -----------ESGISPGKYD--TYG-----STRKNLRMILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGS  122 (259)
T ss_dssp             -----------CTTCCBTTEE--EEC-----C--CCCEEEESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC----
T ss_pred             -----------CCCCCcceeE--eec-----CCCCeEEEEECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCC
Confidence                       0000000000  000     0112356888888888888888888876542  1122345555432   


Q ss_pred             --------------Cceec-CCceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeec
Q psy15667        156 --------------PYVRL-IPKVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH  219 (286)
Q Consensus       156 --------------~~~~~-~~~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~  219 (286)
                                    +.+.. .....+.+|++++|.|.+.+. |.+.+.|.+..+.              ....+      
T Consensus       123 ~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~--------------~~~~~------  182 (259)
T 3omz_A          123 ADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYYIFWYKRLPS--------------KEMIF------  182 (259)
T ss_dssp             --------------CEEECCCCCEEEETTCCEEECCEEECCCSSCEEEEEEECTT--------------CCEEE------
T ss_pred             ccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCceEEEeeeCCC--------------CCcEE------
Confidence                          12222 223566677777777776663 5667777663211              00000      


Q ss_pred             CCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        220 GDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       220 ~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                            +.+...........++.+.. .......|.|.+++.+|+|.|.|.+.+.
T Consensus       183 ------~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~~~  231 (259)
T 3omz_A          183 ------LIRQGSDEQNAKSGRYSVNFKKAAKSVALTISALQLEDSAKYFCALGES  231 (259)
T ss_dssp             ------EEEEETTSCCCEETTEEECCBGGGTBCCEEESSCCGGGCSEEEEEEESC
T ss_pred             ------EEEECCcCCcccCCeEEEEEcCcCCEEEEEECCCChhHCEEEEEEEeCc
Confidence                  00000000000011222221 1122456999999999999999999853

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.74  E-value=2.2e-17  Score=135.06  Aligned_cols=151  Identities=18%  Similarity=0.290  Sum_probs=107.5

Q ss_pred             cCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEE
Q psy15667         72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ  151 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~  151 (286)
                      ..+.-...|.+...          ..+..+.|+|||..+...  ...|.|.++..+|+|.|+|.+.|..+.   ..+.|.
T Consensus        15 ~G~~v~l~C~~~~~----------~~~~~~~W~~~g~~~~~~--~~~l~i~~~~~~d~G~Y~C~~~~~~~s---~~~~l~   79 (262)
T 3rjd_A           15 QEETVTLHCEVLHL----------PGSSSTQWFLNGTATQTS--TPSYRITSASVNDSGEYRCQRGLSGRS---DPIQLE   79 (262)
T ss_dssp             TTCCEEEEEECSSC----------CCTTCEEEEETTEECSCC--SSEEEESSCCGGGCEEEEEEESSSCCC---CCEEEE
T ss_pred             CCCeEEEEEECCCC----------CCCceEEEEECCEEeecc--CCeEEEecCCcccCeEEEEEEecCCcc---ccEEEE
Confidence            44555677765432          112379999999987643  567999999999999999999886543   245566


Q ss_pred             EcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC
Q psy15667        152 LGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD  231 (286)
Q Consensus       152 v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~  231 (286)
                      |...+.....+.                                       ..+.+|+.+.|.|.+..+.|.+.+.|+|+
T Consensus        80 v~~~~~~~~~~~---------------------------------------~~~~~g~~v~l~C~~~~~~p~~~v~W~~~  120 (262)
T 3rjd_A           80 IHRGWLLLQVSS---------------------------------------RVFTEGEPLALRCHAWKDKLVYNVLYYRN  120 (262)
T ss_dssp             EECSSEEEEESC---------------------------------------SEEETTSCEEEEEEEGGGCCCEEEEEEET
T ss_pred             EeccceEecCCC---------------------------------------eEEecCCeEEEEEEccCCCCCceEEEEEC
Confidence            643332111111                                       12446777777777766778889999999


Q ss_pred             CeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        232 GKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       232 g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      |..+...         .....|.|.++..+|+|.|+|.|.|..+.....+.|.|
T Consensus       121 g~~~~~~---------~~~~~l~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V  165 (262)
T 3rjd_A          121 GKAFKFF---------HWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTV  165 (262)
T ss_dssp             TEEEEEE---------EECCCEEESSCCGGGCEEEEEEEESSSEEEEECEEEEE
T ss_pred             Ccccccc---------CCCCeEEEEECChhhCEEEEEEEeCCCCccccceEEEe
Confidence            9876321         11357899999999999999999999988888777776

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.74  E-value=1e-16  Score=133.14  Aligned_cols=36  Identities=22%  Similarity=0.370  Sum_probs=29.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~   39 (286)
                      +.+.. +..+++.+|++++|.|.+.+.  |.+.+.|++.
T Consensus         2 ~~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~   39 (280)
T 3fku_X            2 VQLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQ   39 (280)
T ss_dssp             CCEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCB
T ss_pred             CeEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEe
Confidence            34555 788899999999999999875  6688999974

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.74  E-value=9.1e-17  Score=128.42  Aligned_cols=78  Identities=19%  Similarity=0.218  Sum_probs=47.2

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCC--CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLS--PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~--~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      +.+|+.+.|.|.+....|.| .+.|++++....  ......-.......+.|.|..+..+| |.|+|.|.|..|....++
T Consensus       137 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~~  215 (220)
T 1pz5_B          137 DTSGSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSVLQSGFYSLSSLVTVPSSTWPS-QTVICNVAHPASKVDLIK  215 (220)
T ss_dssp             CSCSSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEECGGGTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCcccCCeEEEEEEEEEcchhcCC-ceEEEEEEECCccEeeee
Confidence            34566666666665443555 777777765310  00000000000114578999998867 999999999999877765


Q ss_pred             EE
Q psy15667        282 KL  283 (286)
Q Consensus       282 ~L  283 (286)
                      .+
T Consensus       216 ~~  217 (220)
T 1pz5_B          216 EI  217 (220)
T ss_dssp             EC
T ss_pred             cC
Confidence            54

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.74  E-value=9.5e-18  Score=129.10  Aligned_cols=165  Identities=14%  Similarity=0.151  Sum_probs=103.1

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      .+.+.+|++|+|.|.+. .|.+.|.|++++..+.        .+   ..+.   ..+      + +.             
T Consensus         4 ~v~~~~G~~VtL~c~~~-~~~~~i~W~~~~~~i~--------~~---~~~~---~~~------~-~~-------------   48 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVA--------EL---ENSE---FRA------F-SS-------------   48 (171)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEE--------EE---ETTE---EEE------C-GG-------------
T ss_pred             EEEEEcCCCEEEcCCCC-CCcceEEEEeCCcEEE--------EE---cCCC---ccc------c-cc-------------
Confidence            35678999999999885 4889999999875321        00   0000   000      0 00             


Q ss_pred             EecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCC
Q psy15667         91 ITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGE  170 (286)
Q Consensus        91 ~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~  170 (286)
                                   |++...+  ....++|.|.++..+|+|.|+|.+.|..|   ...+.|.|..++.             
T Consensus        49 -------------~~~R~~~--~~~~~sL~I~~v~~~DsG~Y~C~~~n~~~---~~~~~L~V~~~~~-------------   97 (171)
T 1ccz_A           49 -------------FKNRVYL--DTVSGSLTIYNLTSSDEDEYEMESPNITD---TMKFFLYVLEMVS-------------   97 (171)
T ss_dssp             -------------GTTSEEE--CTTTCCEEECSCCGGGCEEEEEECTTCCS---CEEEEEEEECCCC-------------
T ss_pred             -------------cCCcEEE--eCCCCeEEECCCChhhCceEEEEEeCCCC---cEEEEEEEECcCC-------------
Confidence                         0110001  01335799999999999999999998776   2356677653321             


Q ss_pred             CEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCe
Q psy15667        171 GLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS  250 (286)
Q Consensus       171 ~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~  250 (286)
                                  .|.+.+..            .   .   ..|.|.+. +.|.|.+.|+|+|..+....          .
T Consensus        98 ------------~p~i~~~~------------~---~---~~L~C~~~-~~p~p~i~W~~~~~~l~~~~----------~  136 (171)
T 1ccz_A           98 ------------KPMIYWEC------------S---N---ATLTCEVL-EGTDVELKLYQGKEHLRSLR----------Q  136 (171)
T ss_dssp             ------------CCEEEEET------------T---T---TEEEEECS-SCSSCEEEEEETTEEEEEES----------S
T ss_pred             ------------CCEEEEec------------C---C---cEEEEEeC-CCCCcEEEEEECCEECcCCc----------c
Confidence                        11221100            0   0   26788775 45778999999998764221          1


Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      ..|.+.  ...|+|.|+|.|.|.+|....++.|.
T Consensus       137 ~~l~~~--~~~~~g~Y~C~a~N~~~~~~~~~~l~  168 (171)
T 1ccz_A          137 KTMSYQ--WTNLRAPFKCKAVNRVSQESEMEVVN  168 (171)
T ss_dssp             SEEEEE--CSCCSSCEEEEEEETTEEEEEEECCC
T ss_pred             eEEEEe--ccCCCceEEEEEEcccCcccceeEEe
Confidence            123333  47899999999999999988777653

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.74  E-value=1.3e-17  Score=147.37  Aligned_cols=187  Identities=17%  Similarity=0.298  Sum_probs=119.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+........+.+|+.++|.|.+.|. |.| .|.|++++..+..  .......    +.-.....|.|.++..+| |.
T Consensus       123 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~----~~~~~~s~L~i~~~~~~d-g~  197 (444)
T 1igt_B          123 APSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQS----DLYTLSSSVTVTSSTWPS-QS  197 (444)
T ss_dssp             CCEEEEECCCSSCCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEET----TEEEEEEEEEECSTTTTT-SC
T ss_pred             CCceeEecccccCCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCccccC----CcEEEEEEEEEchhhcCC-Ce
Confidence            4555444444556899999999999985 777 9999999876421  1111100    000112358899999999 99


Q ss_pred             EEEEEEcCCEEE----E----------------------------Eec-------C------------CCC--C--eeEE
Q psy15667         78 YACVAENRAGTC----E----------------------------ITP-------Y------------DSG--P--YLIA  102 (286)
Q Consensus        78 Y~C~a~n~~g~~----~----------------------------~~~-------~------------~~~--~--~~~~  102 (286)
                      |+|.|.|..+..    .                            +.+       .            +.+  |  +.+.
T Consensus       198 Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~  277 (444)
T 1igt_B          198 ITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQIS  277 (444)
T ss_dssp             CEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEE
T ss_pred             EEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceEEecCCchhheeecCCCcEEEEEEeecccCCCCeEEE
Confidence            999999875531    0                            100       0            011  2  4799


Q ss_pred             EeeCCccCcCCC-------------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEE----EEcCCCceecCCc-e
Q psy15667        103 WFKDGRQIPGRT-------------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAEL----QLGGLPYVRLIPK-V  164 (286)
Q Consensus       103 W~~~g~~l~~~~-------------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l----~v~~~~~~~~~~~-~  164 (286)
                      |+|||..+....             ....|.|.++..+|+|.|+|.|.|..+... ....+    .+...|.+...+. .
T Consensus       278 W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~~P~v~~~~~~~  356 (444)
T 1igt_B          278 WFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAP-IERTISKPKGSVRAPQVYVLPPPE  356 (444)
T ss_dssp             EEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSC-EEEEEECCCCCCBCCEEEEECCCG
T ss_pred             EEECCccccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCc-eEEEEeccCCCCCCCEEEEeCCCh
Confidence            999998774321             124799999999999999999999877641 12222    2334454433221 1


Q ss_pred             EEecCCCEEEEeeEeee-cCC-eEEEEEcCCc
Q psy15667        165 TAIDGEGLSIKCPVAGY-PIE-EVHWEKVPPK  194 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~-p~~-~v~w~~~~~~  194 (286)
                      ....+..++|.|.+.|. |.+ .|.|.+....
T Consensus       357 ~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~  388 (444)
T 1igt_B          357 EEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKT  388 (444)
T ss_dssp             GGTTSSEEEEEEEEEEEBSSCCEEEEEETTEE
T ss_pred             HHccCCeEEEEEEEEeeeCCCCEEEEEECCEE
Confidence            11234459999999995 555 8999996543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.74  E-value=1.5e-17  Score=139.96  Aligned_cols=132  Identities=22%  Similarity=0.285  Sum_probs=99.0

Q ss_pred             ccccCCCcEEEEEEe------ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE-c
Q psy15667         12 QTLQPGPAVSLKCIA------SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE-N   84 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~------~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~-n   84 (286)
                      ..+.+|+++.|.|.+      .|+|.|.+.|++++..+..+.....    . .+.   .|.|.+++.+|+|.|+|.|. |
T Consensus       113 ~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~~~----~-~~~---~L~i~~v~~~d~G~Y~C~a~~n  184 (315)
T 1itb_B          113 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFS----G-VKD---RLIVMNVAEKHRGNYTCHASYT  184 (315)
T ss_dssp             EEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSSEE----E-ETT---EEEESSCCGGGCEEEEEEEEEE
T ss_pred             eEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccceEe----e-cCc---eEEEEeceehhCcEEEEEEEcC
Confidence            568899999999998      8999999999999999865432211    1 122   48899999999999999999 6


Q ss_pred             CCEEEE-------E--e-------c------------------------CCCCCeeEEEeeCCccCcCCC----------
Q psy15667         85 RAGTCE-------I--T-------P------------------------YDSGPYLIAWFKDGRQIPGRT----------  114 (286)
Q Consensus        85 ~~g~~~-------~--~-------~------------------------~~~~~~~~~W~~~g~~l~~~~----------  114 (286)
                      ..|...       +  .       |                        .+.+++.+.|++||..+....          
T Consensus       185 ~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~  264 (315)
T 1itb_B          185 YLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSV  264 (315)
T ss_dssp             ETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEEEETTEECCTTCSSEEEEEEEE
T ss_pred             CCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEEEECCEECCcccccccccceee
Confidence            665431       0  0       0                        011345789999999886422          


Q ss_pred             ----------CcceEEEccCCCCC-CeeEEEEEEcCCcceeeeeeEEEE
Q psy15667        115 ----------SSTSLVINPVGRED-RGIYQCIARRSDGDVAQGSAELQL  152 (286)
Q Consensus       115 ----------~~~~l~i~~v~~~d-~G~Y~C~a~~~~g~~~~~~~~l~v  152 (286)
                                ....|.|.++..+| +|.|+|.|.|..|... ..+.|.|
T Consensus       265 ~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~-~~~~l~v  312 (315)
T 1itb_B          265 ENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDA-AYIQLIY  312 (315)
T ss_dssp             CCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEE-EEEEEEC
T ss_pred             eccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCcee-EEEEEEe
Confidence                      12379999999999 9999999999999763 4566654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.74  E-value=4.6e-17  Score=138.22  Aligned_cols=146  Identities=20%  Similarity=0.231  Sum_probs=99.7

Q ss_pred             CCeeEEEeeCCccCcCC---CCcceEEEccCCCCCCe-eEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCE
Q psy15667         97 GPYLIAWFKDGRQIPGR---TSSTSLVINPVGREDRG-IYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGL  172 (286)
Q Consensus        97 ~~~~~~W~~~g~~l~~~---~~~~~l~i~~v~~~d~G-~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~  172 (286)
                      +.+.+.|+|++..+...   .....|.|.++..+|+| .|+|.+.|..|........+.+...|.+...           
T Consensus        66 p~~~v~W~k~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~-----------  134 (329)
T 3oq3_B           66 KDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPE-----------  134 (329)
T ss_dssp             TTCEEEEEECSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEE-----------
T ss_pred             CCCeeEEEECCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEecc-----------
Confidence            44689999999876432   23578999999999999 9999999988764322222222111110000           


Q ss_pred             EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeeecCCCee
Q psy15667        173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLDSFSS  251 (286)
Q Consensus       173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~~~~~  251 (286)
                                                 .....+.+|+.+.|.|.+. |.| .+.+.|+|++..+...... +...   +.
T Consensus       135 ---------------------------~~~~~~~~G~~v~L~C~~~-g~p~~~~i~W~k~~~~l~~~~~~-~~~~---~~  182 (329)
T 3oq3_B          135 ---------------------------TYELGTHDKYGIDLYCGIL-YAKHYNNITWYKNNQELIIDGTK-YSQS---GQ  182 (329)
T ss_dssp             ---------------------------EEETTSSTTTCEEEECCCC-SCCCCCEEEEEETTEECCCSSSS-EEEE---TT
T ss_pred             ---------------------------ccceEEeCCCcEEEEeccC-CCCCCceEEEEECCccCCCCCce-EecC---CC
Confidence                                       0012356788899999765 567 8999999999988533221 1111   36


Q ss_pred             eEEEcccCCCCCeEEEEEEEec--ccceeeE----EEEEE
Q psy15667        252 LLSINSVSAAHSGEYTCVASNT--AAQARYS----SKLQV  285 (286)
Q Consensus       252 ~L~i~~v~~~d~G~Y~C~a~N~--~g~~~~~----~~L~V  285 (286)
                      .|.|.++..+|+|.|+|.|.|.  .|.....    +.|.|
T Consensus       183 ~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V  222 (329)
T 3oq3_B          183 NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTV  222 (329)
T ss_dssp             EEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEE
T ss_pred             EEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEE
Confidence            8999999999999999999997  6655444    55655

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.73  E-value=1.7e-17  Score=138.07  Aligned_cols=143  Identities=19%  Similarity=0.277  Sum_probs=103.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC-CeeEE-eeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGW-TLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W-~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y   78 (286)
                      ||.+.....+..+.+|+.+.|.|.+.+ |. +.+.| .+||..+..+.++...    ..+    .|.|.+++.+|+| .|
T Consensus        91 ~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~----~~~----~L~i~~v~~~d~G~~Y  161 (290)
T 2o26_X           91 PAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPN----PKA----GITIKNVKRAYHRLCV  161 (290)
T ss_dssp             SSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEE----TTT----EEEEESCCGGGTTCEE
T ss_pred             CCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeC----CCC----CEEEecccHHHCCCEE
Confidence            344445667778899999999999985 77 99999 5788888766665431    111    4889999999999 99


Q ss_pred             EEEEEcCCEEE-----EEec-------------------------------CCCCCee-EEEeeCCccC----cCC----
Q psy15667         79 ACVAENRAGTC-----EITP-------------------------------YDSGPYL-IAWFKDGRQI----PGR----  113 (286)
Q Consensus        79 ~C~a~n~~g~~-----~~~~-------------------------------~~~~~~~-~~W~~~g~~l----~~~----  113 (286)
                      +|.|.|..+..     .+..                               .+.+.+. +.|+++|..+    ...    
T Consensus       162 ~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~~  241 (290)
T 2o26_X          162 RCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQHIAQVKHNSW  241 (290)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEEESSSEEECCCEECCEE
T ss_pred             EEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEecCCCCCccceeeccccc
Confidence            99999976542     1110                               0012344 9999999873    210    


Q ss_pred             -------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667        114 -------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  154 (286)
Q Consensus       114 -------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~  154 (286)
                             .....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       242 ~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  288 (290)
T 2o26_X          242 HRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSA-NVTTTLKVVE  288 (290)
T ss_dssp             EEETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEECC--
T ss_pred             ccCceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcE-EEEEEEEEEe
Confidence                   124679999999999999999999999876 4566666644

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.73  E-value=9.7e-17  Score=135.34  Aligned_cols=152  Identities=19%  Similarity=0.199  Sum_probs=97.6

Q ss_pred             cCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcC----CCCcceEEEccCCCCCCeeEEEEEEcCCcc----e
Q psy15667         72 VEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPG----RTSSTSLVINPVGREDRGIYQCIARRSDGD----V  143 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~----~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~----~  143 (286)
                      ..+.-...|.+...            ++.+.|+|+|..+..    ......|.|.++.++|+|.|+|.+.|..+.    .
T Consensus        37 ~G~~v~L~C~~~~~------------~~~~~W~k~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~~~~~~~~~~~  104 (316)
T 3vh8_G           37 RGGHVTLRCHYRHR------------FNNFMLYKEDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCRGSHPHSPTGWSA  104 (316)
T ss_dssp             TTSCEEEEEEBTTB------------CCSEEEEESSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEEEBCSSSSSSBCC
T ss_pred             CCCCEEEEEEccCC------------CceEEEEeCCCccceeecCCcceEEEEECCCCcccCeEEEEEEEcCCCCcceec
Confidence            44555677866542            356899999987643    234578999999999999999999864321    1


Q ss_pred             eeeeeEEEEcCC---CceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecC
Q psy15667        144 AQGSAELQLGGL---PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG  220 (286)
Q Consensus       144 ~~~~~~l~v~~~---~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~  220 (286)
                      .+..+.|.|...   |.+...+.                                       ..+.+|+.+.|.|.+  .
T Consensus       105 ~s~~~~l~V~~~~~~p~~~~~~~---------------------------------------~~v~~G~~v~L~C~~--~  143 (316)
T 3vh8_G          105 PSNPVVIMVTGNHRKPSLLAHPG---------------------------------------PLVKSGERVILQCWS--D  143 (316)
T ss_dssp             CCCCEEEEEECSSCCCEEEEESC---------------------------------------SEEETTCCEEEEEEE--S
T ss_pred             CCCcEEEEEecCCCCCeEEecCC---------------------------------------CccCCCCeEEEEEcC--C
Confidence            122345555321   11111111                                       114467777777765  2


Q ss_pred             CCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        221 DPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       221 ~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .+++.+.|+|+|..+.................|.|.++..+|+|.|+|.|.|..|.
T Consensus       144 ~~~~~~~w~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~  199 (316)
T 3vh8_G          144 IMFEHFFLHKEGISKDPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTP  199 (316)
T ss_dssp             SCCSEEEEEETTCCSCCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCT
T ss_pred             CCCcEEEEEECCCccccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCC
Confidence            45568899999887643211111111123568999999999999999999999874

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.73  E-value=5.6e-16  Score=123.98  Aligned_cols=127  Identities=15%  Similarity=0.226  Sum_probs=73.8

Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCcc--eeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g~--~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ..|.|.++.++|+|.|.|.+.+..+.  .......|.|...+.                        ..|.|.-.     
T Consensus        79 ~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~------------------------~~P~v~~~-----  129 (220)
T 2fbj_H           79 LYLQMSKVRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA------------------------RNPTIYPL-----  129 (220)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC------------------------BCCEEEEE-----
T ss_pred             EEEEECCCChhhCEEEEEEEeccccccceecCCEEEEecCCCC------------------------CCCEEEEe-----
Confidence            56888999999999999988876432  011224555542110                        00111100     


Q ss_pred             ccccccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCC-CCCceeeecCC--CeeeEEEcccCCCCCeEEEEE
Q psy15667        195 IESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSP-RFPVNVSDLDS--FSSLLSINSVSAAHSGEYTCV  269 (286)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~-~~~~~~~~~~~--~~~~L~i~~v~~~d~G~Y~C~  269 (286)
                            +...+.+|+.+.|.|.+....|.  +.+.|++++..+.. ...........  ....|.|.....+|+|.|+|.
T Consensus       130 ------~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~ytC~  203 (220)
T 2fbj_H          130 ------TLPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFPPALASGGRYTMSNQLTLPAVECPEGESVKCS  203 (220)
T ss_dssp             ------CCCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEE
T ss_pred             ------ecccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecCceECCCCCEEEEEEEEECHHHcCCCCeEEEE
Confidence                  01124566677777766544354  67888888865410 00000000011  123588999999999999999


Q ss_pred             EEeccccee
Q psy15667        270 ASNTAAQAR  278 (286)
Q Consensus       270 a~N~~g~~~  278 (286)
                      |.|..|...
T Consensus       204 v~n~~~~~~  212 (220)
T 2fbj_H          204 VQHDSNPVQ  212 (220)
T ss_dssp             EEETTSCCE
T ss_pred             EEcCCCceE
Confidence            999998765

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.72  E-value=1.8e-16  Score=127.31  Aligned_cols=75  Identities=19%  Similarity=0.248  Sum_probs=47.0

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +.+|+.+.|.|.+....|.+ .+.|+|++..+.......+...+   .....|.|..+..+| |.|+|.|.|..+.....
T Consensus       140 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C~a~n~~~~~~~~  218 (225)
T 1op3_H          140 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  218 (225)
T ss_dssp             CCCCCEEEEEEEEEEEBSSCCEEECCTTSCCTTCEECCCEECTTSCEEEEEEEEEEGGGTTC-CCCCEEEEEGGGTEEEE
T ss_pred             ccCCCcEEEEEEEEeEECCCeEEEEecCCCcCCeEecCceeCCCCCEEEEEEEEEechhcCC-CcEEEEEEcCCCCccEE
Confidence            45677777777776444554 88888888653211000000101   113468999999889 99999999988765443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.72  E-value=1.7e-16  Score=130.91  Aligned_cols=37  Identities=19%  Similarity=0.375  Sum_probs=32.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~   39 (286)
                      +.|...+.++.+.+|++++|.|.+.+.|     .+.+.|+|+
T Consensus        16 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~   57 (268)
T 1x9q_A           16 VVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQ   57 (268)
T ss_dssp             CCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEE
T ss_pred             ceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEE
Confidence            5567778888999999999999999887     589999985

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.72  E-value=6.1e-17  Score=138.33  Aligned_cols=148  Identities=17%  Similarity=0.159  Sum_probs=98.9

Q ss_pred             CeeEEEeeCCccCc----CC---------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCce
Q psy15667         98 PYLIAWFKDGRQIP----GR---------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV  164 (286)
Q Consensus        98 ~~~~~W~~~g~~l~----~~---------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~  164 (286)
                      ++.+.|+|++....    ..         .....|.|.++..+|+|.|+|.+.|..+.. ...+.|.|...+........
T Consensus        47 ~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~n~~~~~-~~~~~l~V~~~~~~~~~~~~  125 (349)
T 4dep_C           47 GLTLIWYWTRQDRDLEEPINFRLPENRISKEKDVLWFRPTLLNDTGNYTCMLRNTTYCS-KVAFPLEVVQKDSCFNSPMK  125 (349)
T ss_dssp             TCEEEEEEEESSCCCEEECCCCCGGGCEEEETTEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEECCCTTSCCSCC
T ss_pred             CceEEEEECCCCCcccccccccccCceEeecCCEEEEccCChhhCEEEEEEEecCCceE-EEEEEEEEecCCcccCcccc
Confidence            47899999985321    10         124579999999999999999999987764 34567777554321110000


Q ss_pred             EEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEee----ecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~----~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                                                        ......+.+|+.+.|.|.+    ..|.|.+.+.|+|+|..+.....
T Consensus       126 ----------------------------------~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~~~l~~~~~  171 (349)
T 4dep_C          126 ----------------------------------LPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNN  171 (349)
T ss_dssp             ----------------------------------CCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETTEECCSCSS
T ss_pred             ----------------------------------cCcceeeecCccEEEEcCCCcccccCCCCceEEEeeCCEECCCccc
Confidence                                              0001124566777777753    14678899999999998854322


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cce---eeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQA---RYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~---~~~~~L~V  285 (286)
                        +...   +..|.|.++..+|+|.|+|.|.|.. |..   ..++.|.|
T Consensus       172 --~~~~---~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v  215 (349)
T 4dep_C          172 --VIPE---GMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKV  215 (349)
T ss_dssp             --EEEE---TTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEE
T ss_pred             --eeec---CCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEE
Confidence              2221   2579999999999999999999998 543   45555554

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.72  E-value=5.5e-17  Score=138.03  Aligned_cols=146  Identities=21%  Similarity=0.281  Sum_probs=101.5

Q ss_pred             CCeeEEEeeCCccC--cCC------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCcee---cCCceE
Q psy15667         97 GPYLIAWFKDGRQI--PGR------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVR---LIPKVT  165 (286)
Q Consensus        97 ~~~~~~W~~~g~~l--~~~------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~---~~~~~~  165 (286)
                      +.+.+.|+|+|..+  ...      .....|.|.++..+|+|.|+|.+.|..|.. ...+.|.|...+...   ......
T Consensus        53 p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~~~n~~g~~-~~~~~l~V~~~~~~~~~~~~~~~~  131 (339)
T 3o4o_C           53 PRINLTWHKNDSARTVPGEEETRMWAQDGALWLLPALQEDSGTYVCTTRNASYCD-KMSIELRVFENTDAFLPFISYPQI  131 (339)
T ss_dssp             SCCBCCCEESSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEEEECCEEETTEEE-EEEEEEEEECSCGGGHHHHCEEEE
T ss_pred             CCceEEEEECCCCcccCccccccEEeeCCeEEECCCCcccCEEEEEEEECCcceE-EEEEEEEEEcCCCccccccccceE
Confidence            45689999999874  322      124679999999999999999999988754 456777776554321   111123


Q ss_pred             EecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEee----ecCCCCCeEEEEeCCeeCCCCC-C
Q psy15667        166 AIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV----THGDPPLTIRWLKDGKPLSPRF-P  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~----~~~~p~~~~~W~~~g~~~~~~~-~  240 (286)
                      +.                                       +|+.+.|.|.+    ..|.|.+.+.|+|+|..+.... +
T Consensus       132 ~~---------------------------------------~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~  172 (339)
T 3o4o_C          132 LT---------------------------------------LSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEK  172 (339)
T ss_dssp             EE---------------------------------------TTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSS
T ss_pred             EE---------------------------------------CCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCce
Confidence            33                                       44555555542    2467788899999999886553 2


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc----ceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA----QARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g----~~~~~~~L~V  285 (286)
                      +.+.   .....|.|.++..+|+|.|+|.|.|..|    ....++.|.|
T Consensus       173 ~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V  218 (339)
T 3o4o_C          173 FLSV---RGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRI  218 (339)
T ss_dssp             EEEC---TTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEE
T ss_pred             eEEc---CCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEE
Confidence            2221   1234799999999999999999999988    4556666665

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.72  E-value=8.9e-17  Score=133.47  Aligned_cols=140  Identities=17%  Similarity=0.279  Sum_probs=103.5

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCe-eEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |...+....+.+|+++.|.|.+.+.|.+. +.|++ ++..+..+.++...    ..+    .|.|.+++.+|+|.|+|.|
T Consensus        92 ~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~----~L~i~~v~~~d~G~Y~C~a  163 (289)
T 3ejj_X           92 WNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFS----PWR----GFIIRKAKVLDSNTYVCKT  163 (289)
T ss_dssp             EEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEE----TTT----EEEESSCCGGGCEEEEEEE
T ss_pred             eecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEEC----CCC----CEEEeecccccCEEEEEEE
Confidence            56666777899999999999999877765 99986 67777666665431    122    3889999999999999999


Q ss_pred             E-cCCEEE------EEe-----------------------------cCC-CCCeeEEEeeCCccCcCCC----------C
Q psy15667         83 E-NRAGTC------EIT-----------------------------PYD-SGPYLIAWFKDGRQIPGRT----------S  115 (286)
Q Consensus        83 ~-n~~g~~------~~~-----------------------------~~~-~~~~~~~W~~~g~~l~~~~----------~  115 (286)
                      . +..+..      .+.                             ... .+++.+.|+++|..+....          .
T Consensus       164 ~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~~~~~~~~~  243 (289)
T 3ejj_X          164 MVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKLEIPLNSDFQDNYYKK  243 (289)
T ss_dssp             EETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEEETTEECCCCEEEEECSSSEEE
T ss_pred             EeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEEECCEEeeccCCcccccceEEe
Confidence            8 433321      111                             001 2346899999998875421          1


Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  153 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~  153 (286)
                      ...|.|.++..+|+|.|+|.|.|..|.. .+++.|.+.
T Consensus       244 ~~~L~i~~v~~~d~G~Y~C~a~N~~G~~-~~s~~L~~~  280 (289)
T 3ejj_X          244 VRALSLNAVDFQDAGIYSCVASNDVGTR-TATMNFQVV  280 (289)
T ss_dssp             EEEEEESSCCSSSCEEEEEEEECSSCEE-EEEEEEECC
T ss_pred             eEEEEEEeecccCCEEEEEEEEcCCCCc-cccEEEEEE
Confidence            4679999999999999999999999976 346666653

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.72  E-value=1.5e-16  Score=128.08  Aligned_cols=131  Identities=18%  Similarity=0.279  Sum_probs=72.5

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCC----CceecCCceEEecCCCEEEEeeEeeecCCeEEEEEc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGL----PYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKV  191 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~----~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~  191 (286)
                      ...|.|.++..+|+|.|.|.+.+..+........|.|...    |.+....                             
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-----------------------------  128 (227)
T 1mju_H           78 TAYMQLSSLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA-----------------------------  128 (227)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC-----------------------------
T ss_pred             eEEEEECCCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec-----------------------------
Confidence            3568888888889999999888753211112345555431    1111100                             


Q ss_pred             CCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCC-CCceeee-cCCCeeeEEEcccCCCCCeEEEE
Q psy15667        192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR-FPVNVSD-LDSFSSLLSINSVSAAHSGEYTC  268 (286)
Q Consensus       192 ~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~-~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C  268 (286)
                               +...+.+|+.+.|.|.+....|.+ .+.|+|++..+... ....... .......|.|..+..+| |.|+|
T Consensus       129 ---------~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~Y~C  198 (227)
T 1mju_H          129 ---------PVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITC  198 (227)
T ss_dssp             ---------CCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEECTTTTTT-SCCEE
T ss_pred             ---------CCccccCCCcEEEEEEeecEeCCCeEEEEecCCCcCCcEECCceecCCeEEEEEEEEEchhhcCC-CeEEE
Confidence                     011133556666666655333444 77888877654210 0000000 00124578999998888 99999


Q ss_pred             EEEecccceeeEEEEEE
Q psy15667        269 VASNTAAQARYSSKLQV  285 (286)
Q Consensus       269 ~a~N~~g~~~~~~~L~V  285 (286)
                      .|.|..+.......+.+
T Consensus       199 ~a~n~~~~~~~~~~~~~  215 (227)
T 1mju_H          199 NVAHPASSTKVDKKIEP  215 (227)
T ss_dssp             EEEEGGGTEEEEEECCC
T ss_pred             EEEECCCCcceEEEeCC
Confidence            99999887766666544

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.72  E-value=1.5e-16  Score=123.47  Aligned_cols=110  Identities=18%  Similarity=0.254  Sum_probs=75.5

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKI  195 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~  195 (286)
                      ...|.|.++..+|+|.|+|.+.+..  .....+.|.|..++                         +.|.+..       
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~v~~~~--~~~~~~~L~V~~~~-------------------------~~P~i~~-------  113 (180)
T 2dru_A           68 NGALRIYNVSKEDRGDYYMRMLHET--EDQWKITMEVYEMV-------------------------SKPMIYW-------  113 (180)
T ss_dssp             TCCEEECSCCGGGCEEEEEEEESSS--EEEEEEEEEEECCC-------------------------CCCEEEE-------
T ss_pred             CccEEEcCCCHHHCeEEEEEEEcCC--eEEEEEEEEEECCC-------------------------CCCEEEe-------
Confidence            4679999999999999999998765  22345666664321                         1111111       


Q ss_pred             cccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        196 ESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       196 ~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                                 .+..+.|.|.+..| |.|.+.|+|++..+..       .   ...+|.+..  .+|+|.|+|.|.|.+|
T Consensus       114 -----------~~~~v~L~C~~~~g-p~p~i~W~~~~~~l~~-------~---~~~~l~~~~--~~d~g~Y~C~a~N~~~  169 (180)
T 2dru_A          114 -----------ECSNATLTCEVLEG-TDVELKLYQGKEHLRS-------L---RQKTMSYQW--TNLRAPFKCKAVNRVS  169 (180)
T ss_dssp             -----------EGGGTEEEEECSSC-TTCEEEEEETTEEEEE-------E---SSSEEEEEC--SCCSSCEEEEEEETTE
T ss_pred             -----------cCCCEEEEEEeCCC-CCCEEEEEECCeECcC-------C---CCCEEEEEE--hhcCccEEEEEecCcC
Confidence                       12347788877556 7899999999987641       1   123555533  7899999999999999


Q ss_pred             ceeeEEEE
Q psy15667        276 QARYSSKL  283 (286)
Q Consensus       276 ~~~~~~~L  283 (286)
                      .....+.+
T Consensus       170 ~~~~~~~i  177 (180)
T 2dru_A          170 QESEMEVV  177 (180)
T ss_dssp             EEEEEECC
T ss_pred             ccccceeE
Confidence            87766544

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.72  E-value=7.8e-16  Score=124.95  Aligned_cols=36  Identities=19%  Similarity=0.229  Sum_probs=31.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL   38 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~   38 (286)
                      .+.|...+..+++.+|++++|.| ..+.|.+.+.|+|
T Consensus         2 ~~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r   37 (245)
T 4ei6_B            2 GPKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYK   37 (245)
T ss_dssp             CCCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEE
T ss_pred             CcceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEE
Confidence            35677777788999999999999 6778899999998

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.71  E-value=2.1e-17  Score=131.00  Aligned_cols=44  Identities=14%  Similarity=0.235  Sum_probs=33.4

Q ss_pred             CCeeEeccccccc--cCCCcEEEEEEeecCC----CCeeEEeeCCEEcCC
Q psy15667          2 PPILTYSFIEQTL--QPGPAVSLKCIASGNP----TPDIGWTLDGFELPT   45 (286)
Q Consensus         2 ~p~~~~~~~~~~~--~~G~~~~l~C~~~g~p----~p~v~W~~~~~~l~~   45 (286)
                      +|.+...+....+  .+|++++|.|.+.|.|    .+.|.|+|++.++..
T Consensus         1 ~P~v~~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~~   50 (207)
T 1l6x_A            1 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   50 (207)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECC
T ss_pred             CCeEEEeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCccccC
Confidence            3555555555544  8999999999999875    349999999987753

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.71  E-value=2.4e-17  Score=133.80  Aligned_cols=43  Identities=14%  Similarity=0.229  Sum_probs=32.7

Q ss_pred             CCeeEecccccc--ccCCCcEEEEEEeecC---CCC-eeEEeeCCEEcC
Q psy15667          2 PPILTYSFIEQT--LQPGPAVSLKCIASGN---PTP-DIGWTLDGFELP   44 (286)
Q Consensus         2 ~p~~~~~~~~~~--~~~G~~~~l~C~~~g~---p~p-~v~W~~~~~~l~   44 (286)
                      +|.+...+....  +.+|++++|.|.+.|.   |.+ .|.|++++..+.
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~   63 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVH   63 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEEC
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCcccc
Confidence            455555555554  8899999999999987   776 899999987664

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.71  E-value=1.9e-15  Score=121.15  Aligned_cols=77  Identities=13%  Similarity=0.105  Sum_probs=49.9

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEe-CCeeCCCCCCce-eeecC--CCeeeEEEcccCC--CCCeEEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLK-DGKPLSPRFPVN-VSDLD--SFSSLLSINSVSA--AHSGEYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~-~g~~~~~~~~~~-~~~~~--~~~~~L~i~~v~~--~d~G~Y~C~a~N~~g~~  277 (286)
                      +.+|+.+.|.|.+....|.+ .+.|++ +|..+....... .....  .....|.|.....  +|.|.|+|.|.|..|..
T Consensus       138 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~y~C~v~n~~~~~  217 (223)
T 1dee_B          138 SNPSSTVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVAQGTNEHVVCKVQHPNGNK  217 (223)
T ss_dssp             CCSSSEEEEEEEEEEEBSSCCEEEEEETTSCBCSCEEECCCEEETTEEEEEEEEEEECTTTTSTTCCEEEEEEECTTCCE
T ss_pred             cCCCCcEEEEEEEEEEeCCCeEEEeEccCCCccceeEECCccccCCeEEEEEEEEEcHHHhccCCCCEEEEEEEeCCCCC
Confidence            45677777777776544555 888998 887764310000 00000  1134688887776  88999999999999877


Q ss_pred             eeEE
Q psy15667        278 RYSS  281 (286)
Q Consensus       278 ~~~~  281 (286)
                      ....
T Consensus       218 ~~~~  221 (223)
T 1dee_B          218 EKDV  221 (223)
T ss_dssp             EEEE
T ss_pred             cccc
Confidence            6554

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.71  E-value=1e-16  Score=129.33  Aligned_cols=42  Identities=17%  Similarity=0.206  Sum_probs=33.7

Q ss_pred             CCeeE-eccccccccCCCcEEEEEEeecC-CC-C-eeEEeeCCEEc
Q psy15667          2 PPILT-YSFIEQTLQPGPAVSLKCIASGN-PT-P-DIGWTLDGFEL   43 (286)
Q Consensus         2 ~p~~~-~~~~~~~~~~G~~~~l~C~~~g~-p~-p-~v~W~~~~~~l   43 (286)
                      +|.+. ..+..+.+.+|++++|.|.+.|. |. | .+.|++||..+
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~   57 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGN   57 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeec
Confidence            45554 56666788999999999999984 74 5 99999998776

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.71  E-value=1.1e-15  Score=127.71  Aligned_cols=75  Identities=20%  Similarity=0.327  Sum_probs=47.1

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--EEcC-----------------CCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--FELP-----------------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~~l~-----------------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+..+++.+|++++|.|.+.+.|  .+.+.|+|+.  ..+.                 ...|+.+...   ......+|.
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~---~~~~~~sL~  104 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSD---KSSSTAYME  104 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEE---GGGTEEEEE
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEe---CCCCEEEEE
Confidence            45677899999999999999877  5889999853  1110                 0122221100   001123477


Q ss_pred             EcccccCCCeEEEEEEEcC
Q psy15667         67 ISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~   85 (286)
                      |.+++.+|+|.|.|.+.|.
T Consensus       105 I~~v~~~DsG~Y~C~~~~~  123 (291)
T 2gki_A          105 LSSLTSEDSAVYYCARGAY  123 (291)
T ss_dssp             ECSCCGGGCEEEEEEEECG
T ss_pred             ECcCCHHHCEEEEEEEecc
Confidence            7777777777777777664

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.71  E-value=6.4e-18  Score=148.93  Aligned_cols=189  Identities=17%  Similarity=0.278  Sum_probs=120.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+.++|.|.+.|. |.| .|.|++++..+...  .....    .+.-.....|.|.++..+| |.
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~~~~~~----~~~~~~~s~L~i~~~~~~d-g~  193 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQ----SDLYTLSSSVTVPSSPRPS-ET  193 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEECCCEEC----SSCEEEEEEEEEETTTTTS-SC
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEecCceec----CCcEEEEEEEEEcchhcCC-Cc
Confidence            4555544444556899999999999986 776 99999998753210  00000    0000112358899999999 99


Q ss_pred             EEEEEEcCCEE----EE----------------------Eec-------------------CCCC----CeeEEEeeCCc
Q psy15667         78 YACVAENRAGT----CE----------------------ITP-------------------YDSG----PYLIAWFKDGR  108 (286)
Q Consensus        78 Y~C~a~n~~g~----~~----------------------~~~-------------------~~~~----~~~~~W~~~g~  108 (286)
                      |+|.|.|..|.    ..                      +.+                   .+..    ++.+.|+|+|.
T Consensus       194 Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~  273 (434)
T 1igy_B          194 VTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNV  273 (434)
T ss_dssp             CEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSC
T ss_pred             EEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHHhcccCCCcEEEEEEeccccCCCCeEEEEEeCCc
Confidence            99999987653    11                      101                   0111    23799999998


Q ss_pred             cCcCC-------------CCcceEEEccCCCCCCeeEEEEEEcCCcceee-eeeEE--EEcCCCceecCC-ceEEecCCC
Q psy15667        109 QIPGR-------------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQ-GSAEL--QLGGLPYVRLIP-KVTAIDGEG  171 (286)
Q Consensus       109 ~l~~~-------------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~-~~~~l--~v~~~~~~~~~~-~~~~~~g~~  171 (286)
                      .+...             .....|.|.++..+|+|.|+|.|.|..+.... ..+.+  .+..+|.+...+ ......|..
T Consensus       274 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~  353 (434)
T 1igy_B          274 EVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDK  353 (434)
T ss_dssp             CBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSE
T ss_pred             ccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCc
Confidence            76421             01346999999999999999999998775311 12222  233345443322 122345778


Q ss_pred             EEEEeeEeeecCC--eEEEEEcCCcc
Q psy15667        172 LSIKCPVAGYPIE--EVHWEKVPPKI  195 (286)
Q Consensus       172 ~~l~c~~~~~p~~--~v~w~~~~~~~  195 (286)
                      +.|.|.+.|.+++  .|.|.+....+
T Consensus       354 ~~L~C~~~g~~P~~~~v~W~k~g~~l  379 (434)
T 1igy_B          354 VSLTCMITDFFPEDITVEWQSDGQAP  379 (434)
T ss_dssp             EEEEEEEEEEBCSCEEEEEEETTSCC
T ss_pred             EEEEEEEEeeECCCeEEEEEECCEec
Confidence            9999999996443  79999976544

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.70  E-value=6.7e-17  Score=111.29  Aligned_cols=86  Identities=15%  Similarity=0.169  Sum_probs=72.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +||.|...+.++.+.+|++++|.|.+.+ |.|.+.|+|||.+|..+.++.+..    .+. ...|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g~~i~~~~~~~i~~----~g~-~~~L~I~~v~~~D~G~Y~C   77 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKGQPLAASPDCEIIE----DGK-KHILILHNCQLGMTGEVSF   77 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETTEECCCBTTEEEEE----ETT-EEEEEECSCCGGGCEEEEE
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECCEECcCCCCEEEEE----ECC-EEEEEECCCChhhCEEEEE
Confidence            4899999999999999999999999986 457899999999998877775532    222 3469999999999999999


Q ss_pred             EEEcCCEEEEEe
Q psy15667         81 VAENRAGTCEIT   92 (286)
Q Consensus        81 ~a~n~~g~~~~~   92 (286)
                      .|.|..+.+.+.
T Consensus        78 ~a~n~~~sa~L~   89 (93)
T 1waa_A           78 QAANTKSAANLK   89 (93)
T ss_dssp             EETTEEEEEEEE
T ss_pred             EECCCcEEEEEE
Confidence            999987666554

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.70  E-value=3.1e-16  Score=126.14  Aligned_cols=77  Identities=19%  Similarity=0.246  Sum_probs=44.7

Q ss_pred             CCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        206 PEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .+|+.+.|.|.+....|.+ .+.|+|++..+.......+....  .....|.|..+..+| |.|+|.|.|..|.......
T Consensus       143 ~~g~~~~l~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~  221 (228)
T 3bae_H          143 TTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-ESITCNVAHPASSTKVDKK  221 (228)
T ss_dssp             -CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEEEEEEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             cCCCCEEEEEEEccEeCCCEEEEEeeCCcccCceEcCceeCCCcEEEEEEEEEEhhhcCC-CcEEEEEEECCCCCCEEEE
Confidence            3555666666554333444 77777776543110000000000  114568899888866 9999999999998765544


Q ss_pred             E
Q psy15667        283 L  283 (286)
Q Consensus       283 L  283 (286)
                      +
T Consensus       222 ~  222 (228)
T 3bae_H          222 I  222 (228)
T ss_dssp             C
T ss_pred             c
Confidence            3

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.70  E-value=1.6e-16  Score=128.64  Aligned_cols=200  Identities=14%  Similarity=0.172  Sum_probs=106.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      +.+...+..+.+.+|++++|.|.+.+ |.+.+.|+|...  .....+...              ..     +...+.-  
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~--~~~~~~~~~--------------~~-----~~~~~~~--   58 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTL--GKELKFLIQ--------------HY-----EKVERDK--   58 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECT--TSCCEEEEE--------------EE-----TTEEEEE--
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECC--CCCCEEEEE--------------Ec-----CCccccC--
Confidence            45666777789999999999999876 788999998421  011111110              00     1111110  


Q ss_pred             EcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCc--ceeeeeeEEEEcCCCceec
Q psy15667         83 ENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG--DVAQGSAELQLGGLPYVRL  160 (286)
Q Consensus        83 ~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g--~~~~~~~~l~v~~~~~~~~  160 (286)
                      ....++            +.-.+++      .....|.|.++..+|+|.|+|.+.+..+  ........|.|........
T Consensus        59 ~~~~~r------------~~~~~~~------~~~~sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~  120 (240)
T 3q5y_A           59 GFLPSR------------FSVQQFD------DYHSEMNMSALELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVT  120 (240)
T ss_dssp             CSCCTT------------EEEEECT------TSCEEEEECSCCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCB
T ss_pred             cccCCe------------EEEEeCC------CCEEEEEECcCChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCC
Confidence            000000            1111111      1235788888888899999998873211  1111223444432100000


Q ss_pred             CCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCC
Q psy15667        161 IPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRF  239 (286)
Q Consensus       161 ~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~  239 (286)
                      .+...+.                       .+        ....+.+|+.+.|.|.+....|.+ .+.|+|+|..+....
T Consensus       121 ~p~~~~~-----------------------~~--------~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~l~~~~  169 (240)
T 3q5y_A          121 PPKVSLF-----------------------EP--------SKAEIANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGV  169 (240)
T ss_dssp             CCEEEEE-----------------------CC--------CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTE
T ss_pred             CCeeEEe-----------------------CC--------chhhcccCCceEEEEEEeeEECCCeEEEEEECCEECcCcE
Confidence            0100000                       00        011133466777777765545544 788999998875432


Q ss_pred             Cce---eeecCC---CeeeEEEcccCCCC-CeEEEEEEEeccc
Q psy15667        240 PVN---VSDLDS---FSSLLSINSVSAAH-SGEYTCVASNTAA  275 (286)
Q Consensus       240 ~~~---~~~~~~---~~~~L~i~~v~~~d-~G~Y~C~a~N~~g  275 (286)
                      ...   ....+.   ....|.|..+..+| .|.|+|.|.|...
T Consensus       170 ~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~~  212 (240)
T 3q5y_A          170 STDPQAYKESNYSYSLSSRLRVSATFWHNPRNHFRCQVQFHGL  212 (240)
T ss_dssp             EECSSCEEEETTEEEEEEEEEEEHHHHSCTTCEEEEEEEECCB
T ss_pred             ecCCceeeCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCC
Confidence            111   011111   12358899999999 7799999999864

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.70  E-value=2.3e-16  Score=133.59  Aligned_cols=135  Identities=15%  Similarity=0.218  Sum_probs=85.6

Q ss_pred             cccccccCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ..+..+.+|+.++|.|.+.|.|++  .+.|++||..|..........  ...+.  ....|.|.....+|.|.|+|.|.|
T Consensus       124 ~~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g~~l~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n  201 (327)
T 2wng_A          124 GPAARATPQHTVSFTCESHGFSPRDITLKWFKNGNELSDFQTNVDPV--GESVSYSIHSTAKVVLTREDVHSQVICEVAH  201 (327)
T ss_dssp             CCSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETTEECCCEEEEEECS--SCCSCEEEEEEEEEECCTTGGGCEEEEEEEC
T ss_pred             ccccccCCCCEEEEEEEEeCccCCCcEEEEEECCEEccccccccccc--cCCCceEEEEEEEEechhcCcCceEEEEEec
Confidence            345678999999999999998766  899999999987543221100  00111  122477877777778999999998


Q ss_pred             CCEE-------EEEe------c---------------------CCCCCe--eEEEeeCCccCcCC-------CC------
Q psy15667         85 RAGT-------CEIT------P---------------------YDSGPY--LIAWFKDGRQIPGR-------TS------  115 (286)
Q Consensus        85 ~~g~-------~~~~------~---------------------~~~~~~--~~~W~~~g~~l~~~-------~~------  115 (286)
                      ..+.       ..+.      |                     .+..|+  .+.|+|||+.+...       ..      
T Consensus       202 ~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~g~~~~  281 (327)
T 2wng_A          202 VTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVRKFYPQRLQLTWLENGNVSRTETASTVTENKDGTYNW  281 (327)
T ss_dssp             TTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEEEEBSSCEEEEEEETTEEEEEEECCSCEECTTSCEEE
T ss_pred             cccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEccccCCCcEEEEEECCeEccCcccCceEECCCCcEEE
Confidence            6542       1110      0                     001122  79999999987421       11      


Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceee
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQ  145 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~  145 (286)
                      ...|.|.++..+|+|.|+|.|.|..+....
T Consensus       282 ~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s  311 (327)
T 2wng_A          282 MSWLLVNVSAHRDDVKLTCQVEHDGQPAVS  311 (327)
T ss_dssp             EEEEEC-------CCEEEEEEEETTCCCEE
T ss_pred             EEEEEEccccccCCCEEEEEEEeCCCCCch
Confidence            135888999999999999999999886543

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.69  E-value=3.8e-15  Score=119.07  Aligned_cols=128  Identities=16%  Similarity=0.190  Sum_probs=72.7

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCc-ceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCc
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPK  194 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g-~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~  194 (286)
                      ...|.|.++..+|+|.|.|.+.+... ........|.|...+.                        ..|.+.-.     
T Consensus        80 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~------------------------~~p~v~~~-----  130 (221)
T 3m8o_H           80 TAFLQMNSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASP------------------------TSPKVFPL-----  130 (221)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCC------------------------BCCEEEEE-----
T ss_pred             EEEEEECCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCC------------------------CCCeEEEe-----
Confidence            34689999999999999999987631 1112234555531110                        00011000     


Q ss_pred             ccccccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCCCceee--ecC--CCeeeEEEcccCCCCCeEEEE
Q psy15667        195 IESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVS--DLD--SFSSLLSINSVSAAHSGEYTC  268 (286)
Q Consensus       195 ~~~~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~~~~~~--~~~--~~~~~L~i~~v~~~d~G~Y~C  268 (286)
                           .+... .+|+.+.|.|.+....|.  +.+.|+|+|..+.........  ...  .....|.|..+..+|+|.|+|
T Consensus       131 -----~~~~~-~~g~~v~L~C~~~~~~P~~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~ytC  204 (221)
T 3m8o_H          131 -----SLCST-QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTC  204 (221)
T ss_dssp             -----ECCSC-CCTTEEEEEEEEEEEBSSCSEEEEESCCSTTCEEEECCCEECSSSSCEEEEEEEEEEGGGSCTTCEEEE
T ss_pred             -----cCccc-ccCCCEEEEEEEEeeECCCCEEEEEEECCEECceEEcCceeeCCCCcEEEEEEEEECHHHcCCCCeEEE
Confidence                 00111 456667777766543444  478888888765211000000  000  013468999999999999999


Q ss_pred             EEEeccccee
Q psy15667        269 VASNTAAQAR  278 (286)
Q Consensus       269 ~a~N~~g~~~  278 (286)
                      .|.|..+...
T Consensus       205 ~v~~~~~~~~  214 (221)
T 3m8o_H          205 HVKHYTNPSQ  214 (221)
T ss_dssp             EEEETTSCCE
T ss_pred             EEEECCCCce
Confidence            9999987543

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.69  E-value=2.4e-16  Score=133.48  Aligned_cols=142  Identities=17%  Similarity=0.309  Sum_probs=99.4

Q ss_pred             ccccccccCC---CcEEEEEE-eecCCCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEE
Q psy15667          8 SFIEQTLQPG---PAVSLKCI-ASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         8 ~~~~~~~~~G---~~~~l~C~-~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ......+.+|   +.++|.|. +.+.|.|.+.|++++..........     ...+.  ....|.|..+..+|+|.|+|.
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~~~~-----~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  212 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIR-----NPNGTVTVISRYRLVPSREAHQQSLACI  212 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEE-----CTTSCEEEEEEEEECCCGGGTTCEEEEE
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccceeE-----CCCCcEEEEEEEEEEeccccCCCEEEEE
Confidence            4455677888   78999997 8899999999999632211000000     01111  123588999999999999999


Q ss_pred             EEcCCEEEEEe--------------cC------------------CCCCee-EEEeeCCccCcCC--CCcceEEEc-cCC
Q psy15667         82 AENRAGTCEIT--------------PY------------------DSGPYL-IAWFKDGRQIPGR--TSSTSLVIN-PVG  125 (286)
Q Consensus        82 a~n~~g~~~~~--------------~~------------------~~~~~~-~~W~~~g~~l~~~--~~~~~l~i~-~v~  125 (286)
                      |.|..|.....              +.                  ..+++. +.|++++..+...  .....|.|. ++.
T Consensus       213 a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~~~~~~~~~~~~~~~~~L~i~~~v~  292 (331)
T 3u83_A          213 VNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWTTLNGSLPKGVEAQNRTLFFKGPIN  292 (331)
T ss_dssp             EEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEEETTBSCCTTEEEETTEEEECSCCC
T ss_pred             EecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEEECCCcccccceecCcEEEEeCCCc
Confidence            99987753211              00                  112345 9999999987643  235689999 999


Q ss_pred             CCCCeeEEEEEEcCCcceeeeeeEEEEcCC
Q psy15667        126 REDRGIYQCIARRSDGDVAQGSAELQLGGL  155 (286)
Q Consensus       126 ~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~  155 (286)
                      .+|+|.|+|.|.|..|.. ...+.|.|...
T Consensus       293 ~~d~G~Y~C~a~N~~G~~-~~~~~l~V~~~  321 (331)
T 3u83_A          293 YSLAGTYICEATNPIGTR-SGQVEVNITEA  321 (331)
T ss_dssp             GGGCEEEEEEEEETTEEE-EEEEEECCBC-
T ss_pred             cccCeEEEEEEEeccccc-eEEEEEEEecc
Confidence            999999999999999976 45677777544

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.69  E-value=5.3e-16  Score=127.79  Aligned_cols=36  Identities=14%  Similarity=0.228  Sum_probs=28.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD   39 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~   39 (286)
                      +.+...+..+.+.+|++++|.|.+. .|.+.+.|+|.
T Consensus        27 ~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~   62 (268)
T 3pl6_D           27 AGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQ   62 (268)
T ss_dssp             SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEE
T ss_pred             ceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEE
Confidence            3445556667899999999999886 67889999983

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.69  E-value=2.6e-15  Score=124.50  Aligned_cols=38  Identities=11%  Similarity=0.148  Sum_probs=32.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG   40 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~   40 (286)
                      +.|...+..+++.+|++++|.|.+.+.|.+.+.|+|++
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~   62 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQF   62 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEEC
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeC
Confidence            45666677889999999999999988888999999864

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.68  E-value=5.2e-15  Score=119.35  Aligned_cols=79  Identities=15%  Similarity=0.152  Sum_probs=47.5

Q ss_pred             CC-CeEEEEEeeecCCCCC-eEEEEe-CCeeCCCCCCc-eeeecC--CCeeeEEEcccCC--CCCeEEEEEEEeccccee
Q psy15667        207 EG-ARTRVICGVTHGDPPL-TIRWLK-DGKPLSPRFPV-NVSDLD--SFSSLLSINSVSA--AHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       207 ~g-~~~~l~c~~~~~~p~~-~~~W~~-~g~~~~~~~~~-~~~~~~--~~~~~L~i~~v~~--~d~G~Y~C~a~N~~g~~~  278 (286)
                      +| +.+.|.|.+....|.+ .+.|++ +|..+...... ......  .....|.|.....  +|.|.|+|.|.|..|...
T Consensus       139 ~g~~~v~L~C~~~g~~P~p~~v~W~~~~g~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~d~g~ytC~v~n~~~~~~  218 (232)
T 1dn0_B          139 SDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGNKE  218 (232)
T ss_dssp             --CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCCEE
T ss_pred             CCCCcEEEEEEEEEEeCCCeEEEEEcCCCCceeeEEECCccccCCcEEEEEEEEEcHHHhcccCCCeEEEEEEeCCCCcc
Confidence            45 5566666655443544 788888 77765430000 000000  1135688988887  899999999999999877


Q ss_pred             eEEEEEE
Q psy15667        279 YSSKLQV  285 (286)
Q Consensus       279 ~~~~L~V  285 (286)
                      ....+.|
T Consensus       219 ~~~~i~~  225 (232)
T 1dn0_B          219 KNVPLPV  225 (232)
T ss_dssp             EEEECCC
T ss_pred             eeEecCC
Confidence            7666554

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.68  E-value=8e-17  Score=110.32  Aligned_cols=85  Identities=21%  Similarity=0.367  Sum_probs=67.1

Q ss_pred             CCeeEeccccc--cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQ--TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~--~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|.....+.  .+.+|+.++|.|.+.+ |.|.|+|+|||++|..+.++.+..    .+. ...|.|.+++.+|+|.|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~~i~~~~~~~i~~----~~~-~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQEVEESDFVVLEN----EGP-HRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTSCCCCCSSCEEEE----ETT-EEEEEESSCCGGGCSEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCEEeeeeeeeeEEe----cCC-eEEEEeCCCChhhcEEEE
Confidence            56665444444  3468999999999865 888999999999998888876532    222 346999999999999999


Q ss_pred             EEEEcCCEEEEEe
Q psy15667         80 CVAENRAGTCEIT   92 (286)
Q Consensus        80 C~a~n~~g~~~~~   92 (286)
                      |.|.|..+.+.++
T Consensus        78 C~a~n~~~~~~lt   90 (91)
T 2lvc_A           78 CVAGDECAYFTVT   90 (91)
T ss_dssp             EECSSCEEEEEEE
T ss_pred             EEEcceEEEEEEE
Confidence            9999988877654

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.68  E-value=3.2e-16  Score=109.01  Aligned_cols=86  Identities=23%  Similarity=0.336  Sum_probs=72.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++||..+..+.++.+..    ..+....|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW----PEDNVCELVIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE----EETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECCEECCCCCCEEEEE----cCCCEEEEEECCCCcCCCEEEEEE
Confidence            7899999999999999999999999999999999999999998766654311    112234699999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        81 a~N~~g~~~~   90 (99)
T 1g1c_A           81 AINIAGETSS   90 (99)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCCcEEE
Confidence            9999987653

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.67  E-value=3.4e-16  Score=142.81  Aligned_cols=179  Identities=22%  Similarity=0.405  Sum_probs=107.4

Q ss_pred             cccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEEEEEcCCEE
Q psy15667         11 EQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYACVAENRAGT   88 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C~a~n~~g~   88 (286)
                      +..+.+|++++|.|.+ .+.|.+.+.|+|++..+... +                  .  +.. ..| .|          
T Consensus       375 ~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~-~------------------~--~~~-~~~~~~----------  422 (581)
T 3o3u_N          375 NITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAW-K------------------V--LSP-QGGGPW----------  422 (581)
T ss_dssp             EEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSC-E------------------E--CCS-CCSSGG----------
T ss_pred             ccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEE-E------------------e--ccc-CCCCCc----------
Confidence            3467899999999998 78999999999986532111 0                  0  000 000 00          


Q ss_pred             EEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEec
Q psy15667         89 CEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAID  168 (286)
Q Consensus        89 ~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~  168 (286)
                                      .+...+   .....|.|.++..+|+|.|+|.+.|..+......+.|.|...|....        
T Consensus       423 ----------------~~r~~~---~~~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~p~--------  475 (581)
T 3o3u_N          423 ----------------DSVARV---LPNGSLFLPAVGIQDEGIFRCQAMNRNGKETKSNYRVRVYQIPGKPE--------  475 (581)
T ss_dssp             ----------------GGTSEE---CTTSCEEESSCCGGGCEEEEEEEECTTSCEEEEEEEEEEEBCCCCCE--------
T ss_pred             ----------------CCcEEE---cCCceEEEeccccccCeEEEEEEEcCCCceeEEEEEEEEEcCCCCCE--------
Confidence                            000000   11236889999999999999999988876544567777754332100        


Q ss_pred             CCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCe-EEEEEeeecCCCCCeEEEEeCCeeCCCCC-Cceeee-
Q psy15667        169 GEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGAR-TRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSD-  245 (286)
Q Consensus       169 g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~-~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~-  245 (286)
                                       +.         .   ....+.+|.. ..|.|.+..+.|.+.+.|+|+|..+.... ...+.. 
T Consensus       476 -----------------i~---------~---~~~~~~~~~~~~~l~C~~~~~~P~~~i~W~~~g~~l~~~~~~~~~~~~  526 (581)
T 3o3u_N          476 -----------------IV---------D---SASELTAGVPNKVGTCVSEGSYPAGTLSWHLDGKPLVPNEKGVSVKEQ  526 (581)
T ss_dssp             -----------------EE---------S---CCSEECTTSCEEEEEEEEEEEBSCCEEEEEETTEECCTTSTTEEEEEE
T ss_pred             -----------------EE---------c---CCcccccCCceeEEEEECCCCCCCCeEEEEECCEECCCCCCeEEEEee
Confidence                             00         0   0011223333 34567665556778888888888876432 222211 


Q ss_pred             --c--C----CCeeeEEEcccCCCC-CeEEEEEEEecccce
Q psy15667        246 --L--D----SFSSLLSINSVSAAH-SGEYTCVASNTAAQA  277 (286)
Q Consensus       246 --~--~----~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~~  277 (286)
                        .  .    ....+|.|..++.+| .|.|+|.|.|.++..
T Consensus       527 ~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~n~~~~~  567 (581)
T 3o3u_N          527 TRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFSPGLPRH  567 (581)
T ss_dssp             EEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEECSSCSS
T ss_pred             eEEcCCCceEEEEEEEEEEeccccCCCceEEEEEeccCCCC
Confidence              0  0    124579999998555 899999999997543

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.67  E-value=4e-16  Score=109.37  Aligned_cols=85  Identities=19%  Similarity=0.353  Sum_probs=73.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+||+..+..+.++.+..    .+ ....|.|.++..+|+|.|+|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~----~~-~~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNGVELQESSKIHYTN----TS-GVLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE----ET-TEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCEEEEE----CC-CEEEEEEcCCCcccCEEEEEE
Confidence            7899999999999999999999999999999999999999998777765421    12 224699999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        83 a~N~~G~~~~   92 (103)
T 3qp3_A           83 CTNYKGEASD   92 (103)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCCcEEE
Confidence            9999987653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.67  E-value=4.4e-16  Score=111.36  Aligned_cols=85  Identities=18%  Similarity=0.242  Sum_probs=72.8

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.|+|.|.+.|+||+..+..+.++.+..     ......|.|.+++.+|+|.|+|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C   80 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----SENGSKLTILAARQEHCGCYTL   80 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE-----CSSEEEEEETTCCTTTCEEEEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEECcCCCCEEEEE-----cCCEEEEEECCCChhcCEEEEE
Confidence            38999999999999999999999999999999999999999998777765431     1123469999999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        81 ~a~N~~g~~~   90 (114)
T 2cqv_A           81 LVENKLGSRQ   90 (114)
T ss_dssp             EEECSSCEEE
T ss_pred             EEEECCCcEE
Confidence            9999988654

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.67  E-value=5.8e-15  Score=119.80  Aligned_cols=212  Identities=16%  Similarity=0.160  Sum_probs=110.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      +.+...+..+.+.+|++++|.|.+.+.  +.+.+.|+|+...  ....+.+              ....     .+....
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~~~--------------~~~~-----~~~~~~   60 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPG--EVIQFLV--------------SISY-----DGTVRK   60 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTT--SCCEEEE--------------EECS-----SSCEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCC--CCcEEEE--------------EEec-----CCceec
Confidence            456667778899999999999999885  6789999985311  0011110              0000     000000


Q ss_pred             EEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCc-c-----eeeeeeEEEEcC
Q psy15667         81 VAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDG-D-----VAQGSAELQLGG  154 (286)
Q Consensus        81 ~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g-~-----~~~~~~~l~v~~  154 (286)
                      .  .        ....  ..+...++.     ......|.|.++..+|+|.|.|.+.+... .     .......|.|..
T Consensus        61 ~--~--------~~~~--~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~  123 (242)
T 1hxm_B           61 E--S--------GIPS--GKFEVDRIP-----ETSTSTLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITD  123 (242)
T ss_dssp             C--T--------TCCT--TSEEEEEET-----TTTEEEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEES
T ss_pred             C--C--------cccC--CeEEEEecC-----CCcEEEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcc
Confidence            0  0        0000  001111110     01235788999999999999998887531 1     011123455533


Q ss_pred             CCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCe
Q psy15667        155 LPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGK  233 (286)
Q Consensus       155 ~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~  233 (286)
                      .+.....                   .|.+.+         .  ......+.+|+.+.|.|.+....|. +.+.|+|++.
T Consensus       124 ~~~~~~~-------------------~p~~~v---------~--~p~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~  173 (242)
T 1hxm_B          124 KQLDADV-------------------SPKPTI---------F--LPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKS  173 (242)
T ss_dssp             SCCCSCC-------------------SCBCCC---------C--CCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSS
T ss_pred             cccCCCc-------------------CCCceE---------E--CCChhhcccCCCceEEEEEeeEECCCeEEEEEcCCC
Confidence            2100000                   000000         0  0001224457777777776644453 6888998886


Q ss_pred             -eCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        234 -PLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       234 -~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                       .+...........+   .....|.|..+.. | |.|+|.|.|..+.......|.
T Consensus       174 ~~l~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~  226 (242)
T 1hxm_B          174 NTILGSQEGNTMKTNDTYMKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEII  226 (242)
T ss_dssp             CCCCCCEECCCEECSSSEEEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEE
T ss_pred             EeecCccccceecCCCcEEEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEee
Confidence             45322100001111   1134688887765 5 999999999998776655554

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.67  E-value=1.6e-15  Score=124.72  Aligned_cols=76  Identities=18%  Similarity=0.205  Sum_probs=45.1

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      +.+|+.+.|.|.+....|.+ .+.|+|++..+.......+....  .....|.|..+..+| |.|+|.|.|.........
T Consensus       141 v~~g~~v~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~YtC~v~n~~~~~~~~~  219 (261)
T 2xqy_G          141 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPS-QSITCNVAHPASSTKVDK  219 (261)
T ss_dssp             --CCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCEEETTEEEEEEEEEEETTTTTT-SCCEEEEEEGGGTEEEEE
T ss_pred             ccCCCcEEEEEEEEeEeCCCCEEEEecCCCcCceEecCceecCCcEEEEEEEEEeccccCC-CEEEEEEEECCCCccEEE
Confidence            34566666777665433444 78888887654211000000000  113578999988888 999999999877654443

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.66  E-value=1.4e-15  Score=125.37  Aligned_cols=70  Identities=14%  Similarity=0.261  Sum_probs=44.2

Q ss_pred             CCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCcee---e-----ecC--CCeeeEEEcccCCCC-CeEEEEEEEecc
Q psy15667        207 EGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNV---S-----DLD--SFSSLLSINSVSAAH-SGEYTCVASNTA  274 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~---~-----~~~--~~~~~L~i~~v~~~d-~G~Y~C~a~N~~  274 (286)
                      +|+.+.|.|.+....|.+ .+.|+|+|..+........   .     ...  .....|.|.....+| .|.|+|.|.|..
T Consensus       163 ~g~~v~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~~g~YtC~v~~~~  242 (270)
T 3qib_D          163 HTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVCTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  242 (270)
T ss_dssp             HHSEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEECSSCEESCTTSSSCCEEEEEEEEEEHHHHHSTTCEEEEEEEECC
T ss_pred             cCCceEEEEEecceeCCCeEEEEEECCEECCCCcccccccccccccCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEecC
Confidence            466666777665434544 7889999887754321100   0     000  112457888888888 999999999986


Q ss_pred             cc
Q psy15667        275 AQ  276 (286)
Q Consensus       275 g~  276 (286)
                      ..
T Consensus       243 l~  244 (270)
T 3qib_D          243 LS  244 (270)
T ss_dssp             BC
T ss_pred             CC
Confidence            53

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.66  E-value=8.5e-16  Score=136.19  Aligned_cols=188  Identities=16%  Similarity=0.315  Sum_probs=114.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+........+.+|+.++|.|.+.|. |. +.|.|++++..+... .+.  ......+.  ....|.|.++..+| |.
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~-~~~--~~~~~~~~~~~~s~L~i~~~~~~d-G~  207 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVH-TFP--AVLQSSGLYSLSSVVTVPSSSLGT-QT  207 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEE-EEE--EEECTTSCEEEEEEEEECSGGGGT-SC
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccce-EcC--ceECCCCCEEEEEEEEecccccCC-ce
Confidence            4555555555567899999999999987 65 899999999765311 110  00011111  12358999999999 99


Q ss_pred             EEEEEEcCCEEE-----------------------------E--E-ec------------------CCCCCe----eEEE
Q psy15667         78 YACVAENRAGTC-----------------------------E--I-TP------------------YDSGPY----LIAW  103 (286)
Q Consensus        78 Y~C~a~n~~g~~-----------------------------~--~-~~------------------~~~~~~----~~~W  103 (286)
                      |+|.|.|..+..                             .  + .+                  .+.+|.    .++|
T Consensus       208 Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W  287 (457)
T 1hzh_H          208 YICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNW  287 (457)
T ss_dssp             CEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEE
T ss_pred             EEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEE
Confidence            999999865421                             0  0 00                  011222    8999


Q ss_pred             eeCCccCcCC-------CCcceEEEcc---CCCCC---CeeEEEEEEcCCcceeeeeeEEE----EcCCCceecCC-c-e
Q psy15667        104 FKDGRQIPGR-------TSSTSLVINP---VGRED---RGIYQCIARRSDGDVAQGSAELQ----LGGLPYVRLIP-K-V  164 (286)
Q Consensus       104 ~~~g~~l~~~-------~~~~~l~i~~---v~~~d---~G~Y~C~a~~~~g~~~~~~~~l~----v~~~~~~~~~~-~-~  164 (286)
                      +|||..+...       ...+.+.+..   +..+|   +|.|+|.|.|..+.. .....+.    +...|.+...+ . .
T Consensus       288 ~k~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~-~~~~~v~~~~~~~~~P~v~~~~~~~~  366 (457)
T 1hzh_H          288 YVDGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPA-PIEKTISKAKGQPREPQVYTLPPSRD  366 (457)
T ss_dssp             EETTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSS-CEEEEECCCCCCCBCCEEEEECCCGG
T ss_pred             EeCCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCC-cceEEEEcccCCCCCCeEEEECCCcc
Confidence            9999876432       1223344432   33555   999999999875543 1222232    23345443322 1 1


Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcc
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKI  195 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~  195 (286)
                      .+..|+ +.|.|.+.|.|++  .+.|.+.+..+
T Consensus       367 ~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g~~l  398 (457)
T 1hzh_H          367 ELTKNQ-VSLTCLVKGFYPSDIAVEWESNGQPE  398 (457)
T ss_dssp             GGGSSE-EEEEEEEEEEBSSCCEEEEEETTEEC
T ss_pred             ccCCCc-EEEEEEEEeEECCCCEEEEEECCEEC
Confidence            223455 9999999997554  89999965433

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.66  E-value=6.1e-16  Score=128.58  Aligned_cols=140  Identities=13%  Similarity=0.190  Sum_probs=99.9

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCC--CeeEEeeC-CEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD-GFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~-~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +...+.+..+.+|+.++|.|.+.+ |.  +.+.|+++ +..+..+.++...    ..+    .|.|.+++.+|+|.|+|.
T Consensus        92 ~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~d~G~Y~C~  162 (292)
T 4dkd_C           92 WNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS----PWH----GFTIHRAKFIQSQDYQCS  162 (292)
T ss_dssp             EEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC----SSS----CCEETTCCGGGCSEEEEE
T ss_pred             ccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc----CCc----eEEECCCCHHHCeEEEEE
Confidence            456667778999999999999997 54  78999997 5566555554321    112    278999999999999999


Q ss_pred             EEcCCEEE-----E--Eec-----------------------------CC-CCCeeEEEeeCCccCcCCC----------
Q psy15667         82 AENRAGTC-----E--ITP-----------------------------YD-SGPYLIAWFKDGRQIPGRT----------  114 (286)
Q Consensus        82 a~n~~g~~-----~--~~~-----------------------------~~-~~~~~~~W~~~g~~l~~~~----------  114 (286)
                      |.|..+..     .  +..                             .. ..+..+.|++++..+....          
T Consensus       163 a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  242 (292)
T 4dkd_C          163 ALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNNRYQ  242 (292)
T ss_dssp             ECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEECCBSSCCCCCCBEEEEETTEEE
T ss_pred             EEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEEeCCCcccccCccceeccceee
Confidence            99865521     1  110                             00 1124688999988764321          


Q ss_pred             CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667        115 SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  154 (286)
Q Consensus       115 ~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~  154 (286)
                      ....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       243 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~l~V~~  281 (292)
T 4dkd_C          243 KVLTLNLDQVDFQHAGNYSCVASNVQGKH-STSMFFRVVE  281 (292)
T ss_dssp             EEEEEEESSCCTTSCEEEEEEEECSSCEE-EEEEEECC--
T ss_pred             eEEEEEECccChhcCeEEEEEEecCCCCc-eeEEEEEEee
Confidence            12479999999999999999999999875 4566777643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.66  E-value=3e-16  Score=105.71  Aligned_cols=78  Identities=24%  Similarity=0.411  Sum_probs=65.3

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      +.++.+.+|++++|.|.+.+ |.|.|.|+|||.+|..+.++.+..    .+ ....|.|.+++.+|+|.|+|.|.|..+.
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g~~l~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   76 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDGERLASQGRVQLEQ----AG-ARQVLRVQGARSGDAGEYLCDAPQDSRI   76 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETTEECCCCSSEEEEE----CS-SCEEEEESSCSSTTCEEEEEECTTTCEE
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECCEEccccccEEEee----cC-CeEEEEecCCCCcccEEEEEEECCEEEE
Confidence            45678999999999999866 889999999999998888776532    22 2346999999999999999999998888


Q ss_pred             EEEe
Q psy15667         89 CEIT   92 (286)
Q Consensus        89 ~~~~   92 (286)
                      +.+.
T Consensus        77 a~l~   80 (84)
T 2lu7_A           77 FLVS   80 (84)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.66  E-value=4.4e-15  Score=121.37  Aligned_cols=129  Identities=17%  Similarity=0.204  Sum_probs=71.8

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcc---eeeeeeEEEEcC----CCceec-CCceEEecCCCEEEEeeEeeecCCeEE
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGD---VAQGSAELQLGG----LPYVRL-IPKVTAIDGEGLSIKCPVAGYPIEEVH  187 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~---~~~~~~~l~v~~----~~~~~~-~~~~~~~~g~~~~l~c~~~~~p~~~v~  187 (286)
                      ...|.|.++..+|+|.|.|.+.+....   .......|.|..    .|.+.. .+...                      
T Consensus        78 ~~sL~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~----------------------  135 (253)
T 3liz_H           78 TLFLQMSSLKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSA----------------------  135 (253)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC-------------------------
T ss_pred             EEEEEECCCChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcc----------------------
Confidence            346889999999999999988775210   111224555531    122211 11111                      


Q ss_pred             EEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecC--CCeeeEEEcccCCCCCe
Q psy15667        188 WEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLD--SFSSLLSINSVSAAHSG  264 (286)
Q Consensus       188 w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~--~~~~~L~i~~v~~~d~G  264 (286)
                                       +..|+.+.|.|.+....|.+ .+.|++++..+............  ...+.|.|.....+| |
T Consensus       136 -----------------~~~g~~v~L~C~~~g~~P~~~~v~W~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d-g  197 (253)
T 3liz_H          136 -----------------AQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTFPAVLQSDLYTLSSSVTVPSSTWPS-E  197 (253)
T ss_dssp             --------------------CCEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEEETTEEEEEEEEEEETTSTTT-S
T ss_pred             -----------------cCCCCcEEEEEEEeeEeCCCeEEEEEeCCeecceEeCCccccCCeEEEEEEEEEcHHHCCC-c
Confidence                             23455555556554434444 67787777633110000000000  113578999999999 9


Q ss_pred             EEEEEEEecccceeeEEEEE
Q psy15667        265 EYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       265 ~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      .|+|.|.|..+.......|.
T Consensus       198 ~ytC~v~~~~~~~~~~~~~~  217 (253)
T 3liz_H          198 TVTCNVAHPASSTKVDKKIV  217 (253)
T ss_dssp             CCEEEEEEGGGTEEEEEECC
T ss_pred             eEEEEEEECCCCcceEEEec
Confidence            99999999999877766654

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.66  E-value=4.2e-16  Score=107.22  Aligned_cols=83  Identities=18%  Similarity=0.258  Sum_probs=69.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|++++  ..+..+.++..      .. ....|.|.++..+|+|.|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~------~~-~~~~L~i~~~~~~D~G~Y~   74 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA------KS-STTSIFFPSAKRADSGNYK   74 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTTSEEEE------ET-TEEEEECTTBCGGGCEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCcEEEEe------cC-CEEEEEECCCChhcCEEEE
Confidence            799988888889999999999999999999999999999  88865533321      11 1246999999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|....
T Consensus        75 C~a~N~~G~~~~   86 (93)
T 1wit_A           75 LKVKNELGEDEA   86 (93)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEcCCCeEEE
Confidence            999999997653

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.65  E-value=5.4e-16  Score=109.60  Aligned_cols=80  Identities=25%  Similarity=0.429  Sum_probs=62.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        25 v~~G~~~~l~C~~~-G~P~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  102 (107)
T 3knb_B           25 VVSGAEAELKCVVL-GEPPPVVVWEKGGQQLAASERLSFPAD-GAEHGLLLTAALPTDAGVYVCRARNAAGEAYAAAAVT  102 (107)
T ss_dssp             EETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEECCEE-TTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEE-EecCCEEEEEECcccccceeeEEEeec-CceEEEEEecCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            34455555555543 566778889999999987776665543 2356899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus       103 V~  104 (107)
T 3knb_B          103 VL  104 (107)
T ss_dssp             EE
T ss_pred             EE
Confidence            73

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.65  E-value=5e-16  Score=108.44  Aligned_cols=80  Identities=20%  Similarity=0.385  Sum_probs=62.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC--ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP--VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|+.+.....  +.+.. .....+|.|.++..+|+|.|+|.|.|..|..+.++.
T Consensus        17 v~~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   94 (100)
T 3knb_A           17 IDEGKVLTVACAFT-GEPTPEVTWSCGGRKIHSQEQGRFHIEN-TDDLTTLIIMDVQKQDGGLYTLSLGNEFGSDSATVN   94 (100)
T ss_dssp             EETTSEEEEEEEEE-EESCCEEEEEETTEECCTTGGGTEEEEE-CSSEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE-EecCCEEEEEECceEeeeeccceeeeec-ccceEEEEEcCCCccCCEEEEEEEEECCCEEEEEEE
Confidence            45666666666654 567788899999998865543  33333 233568999999999999999999999999999999


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.|+
T Consensus        95 l~V~   98 (100)
T 3knb_A           95 IHIR   98 (100)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9985

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.65  E-value=3.1e-15  Score=133.31  Aligned_cols=176  Identities=17%  Similarity=0.262  Sum_probs=110.9

Q ss_pred             cCCCcEEEEEEeecC-CC-C-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcCCEE-
Q psy15667         15 QPGPAVSLKCIASGN-PT-P-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENRAGT-   88 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~-p~-p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~~g~-   88 (286)
                      .+|+.++|.|.+.|. |. | .|.|++++..+........  .....+.  ....|.|.++..+|+|.|+|.|.|..+. 
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~--~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~  216 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPS--QDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPS  216 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCce--ecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCc
Confidence            789999999999997 65 5 9999998854321100000  0001111  1234889999999999999999987542 


Q ss_pred             ----EE----------------------------Ee-c-----------------CCCCC---eeEEEeeCCccCcCC--
Q psy15667         89 ----CE----------------------------IT-P-----------------YDSGP---YLIAWFKDGRQIPGR--  113 (286)
Q Consensus        89 ----~~----------------------------~~-~-----------------~~~~~---~~~~W~~~g~~l~~~--  113 (286)
                          ..                            +. +                 .+..|   +.++| +++......  
T Consensus       217 ~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~~~~~~~~~~~  295 (475)
T 1iga_A          217 QDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-TPSSGKSAVQG  295 (475)
T ss_pred             eeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-CCCCcCCcccc
Confidence                01                            00 0                 00112   48999 443322110  


Q ss_pred             ----C------CcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEE---EcCCCceecCCc--eEEecCCCEEEEeeE
Q psy15667        114 ----T------SSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQ---LGGLPYVRLIPK--VTAIDGEGLSIKCPV  178 (286)
Q Consensus       114 ----~------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~---v~~~~~~~~~~~--~~~~~g~~~~l~c~~  178 (286)
                          .      ....|.|.++..+|+|.|+|.|.|..+... ....|.   +...|.+...+.  ..+..|+.+.|.|.+
T Consensus       296 ~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~-~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~  374 (475)
T 1iga_A          296 PPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTP-LTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLA  374 (475)
T ss_pred             CceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCc-eEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEE
Confidence                0      124699999999999999999999887642 233342   234455544332  235679999999999


Q ss_pred             eeecC--CeEEEEEcCCc
Q psy15667        179 AGYPI--EEVHWEKVPPK  194 (286)
Q Consensus       179 ~~~p~--~~v~w~~~~~~  194 (286)
                      .|.++  +.|.|.+.+..
T Consensus       375 ~g~~P~~~~v~W~k~g~~  392 (475)
T 1iga_A          375 RGFSPKDVLVRWLQGSQE  392 (475)
T ss_pred             eeeECCCCEEEEEECCEE
Confidence            99643  48999996543

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.2e-15  Score=106.04  Aligned_cols=85  Identities=25%  Similarity=0.513  Sum_probs=71.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+..+. ++..    ...++ ...|.|.+++.+|+|.|+|
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~----~~~~~-~~~L~i~~~~~~D~G~Y~C   79 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE----EAEGG-LCRLRILAAERGDAGFYTC   79 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEE----ECGGG-EEEEEESSCCGGGCEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEE----ECCCC-EEEEEEccCCcCCCEEEEE
Confidence            7899999999999999999999999999999999999999987543 3332    11222 3469999999999999999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .|.|..|....
T Consensus        80 ~a~N~~g~~~~   90 (99)
T 1u2h_A           80 KAVNEYGARQC   90 (99)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCCceeE
Confidence            99999987653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.64  E-value=1.4e-15  Score=105.65  Aligned_cols=84  Identities=21%  Similarity=0.483  Sum_probs=72.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+..+.++.+..    .+. ...|.|.++..+|+|.|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~~-~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDGKAITQGGKYKLSE----DKG-GFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETTEECCSSSSEEEEE----ETT-EEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECCEECcCCCCEEEEE----eCC-EEEEEECCCCcccCEEEEEE
Confidence            7899999999999999999999999999999999999999998777775431    122 23599999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.|..|...
T Consensus        81 a~n~~g~~~   89 (99)
T 3puc_A           81 VKNSAGSVS   89 (99)
T ss_dssp             EEETTEEEE
T ss_pred             EEeCCCcEe
Confidence            999988764

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.64  E-value=6e-14  Score=112.34  Aligned_cols=159  Identities=17%  Similarity=0.292  Sum_probs=112.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeec-CC---CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASG-NP---TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g-~p---~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +.+++.|....+..|+.++|+|.+.| .|   ...++|+|||.++....               ..|.|..++..|+|.|
T Consensus         3 ~tVs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG~~IsGaT---------------~tLti~s~t~sdSG~Y   67 (304)
T 3shs_A            3 FTVSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDDQPHENNT---------------ATLTVADATSENAGSY   67 (304)
T ss_dssp             EEEEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETTEECSCCS---------------SEEEESSCCGGGCEEE
T ss_pred             cEEEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECCccccCCc---------------ceEEeeeccccCCeEE
Confidence            56788999999999999999998874 57   34799999998875321               1377999999999999


Q ss_pred             EEEEEcCCEEEE----------------Ee------------------c--CC-CC-----CeeEEEeeCCccCcCCCCc
Q psy15667         79 ACVAENRAGTCE----------------IT------------------P--YD-SG-----PYLIAWFKDGRQIPGRTSS  116 (286)
Q Consensus        79 ~C~a~n~~g~~~----------------~~------------------~--~~-~~-----~~~~~W~~~g~~l~~~~~~  116 (286)
                      +|.+.+..|...                +.                  .  .+ .+     ...+.|+||+..+..   .
T Consensus        68 qCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA~~~~yTYQWyKngt~Isg---A  144 (304)
T 3shs_A           68 KVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPADNYELHYSWSKGEDVIDT---T  144 (304)
T ss_dssp             EEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSSTTCCCEEEEEETTEEEES---S
T ss_pred             EEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcccCCCceeEEeeCCeEccC---c
Confidence            999987554110                10                  0  01 11     358999999987753   3


Q ss_pred             ceEEEccCCCCCCeeEEEEEEcCCc-ceeeeeeEEEEcCCCc-eecCCceEEecCCCEEEEeeEe
Q psy15667        117 TSLVINPVGREDRGIYQCIARRSDG-DVAQGSAELQLGGLPY-VRLIPKVTAIDGEGLSIKCPVA  179 (286)
Q Consensus       117 ~~l~i~~v~~~d~G~Y~C~a~~~~g-~~~~~~~~l~v~~~~~-~~~~~~~~~~~g~~~~l~c~~~  179 (286)
                      ..|.+......++|.|+|.+.|..+ ...+.+..+.+..... ..+.....+..|+.+.|...+.
T Consensus       145 q~lT~sS~TateaG~YtV~VTn~~~~c~~s~~~~i~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~  209 (304)
T 3shs_A          145 QDITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNYVVS  209 (304)
T ss_dssp             SEEEECSCCGGGCEEEEEEEESSSGGGCEEEEEEEEECEEEEEECCCSEEEEETTSCEEECCEEE
T ss_pred             cccceeeEEecCCeEEEEEEEcCCCCcccccceEEEEEccccchhheEeehhhcCcEEEEEEEEe
Confidence            4678888899999999999999866 4444455555533322 1223344567788888876653

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.64  E-value=1.2e-14  Score=115.73  Aligned_cols=196  Identities=20%  Similarity=0.237  Sum_probs=101.2

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+..+.+.+|++++|.|.+.+.|  .+.+.|+|+...  ....+++              .+..     .|.        
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~--~~~~~l~--------------~~~~-----~~~--------   56 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPG--KGLEWIA--------------AISS-----GGS--------   56 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTT--SCCEEEE--------------EECT-----TCC--------
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCC--CCcEEEE--------------EEcC-----CCC--------
Confidence            36677899999999999999865  578999986311  0011111              0000     000        


Q ss_pred             CEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc--eeeeeeEEEEcCC----Ccee
Q psy15667         86 AGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGGL----PYVR  159 (286)
Q Consensus        86 ~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~--~~~~~~~l~v~~~----~~~~  159 (286)
                         ....+  .....+....+.     ......|.|.++..+|+|.|.|.+.+..+.  .....+.|.|...    |.+.
T Consensus        57 ---~~~~~--~~~~R~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~  126 (215)
T 1c5d_H           57 ---PYYNS--ALKSRLSINRDT-----SKSQVFLKMNSLQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVY  126 (215)
T ss_dssp             ---EECCT--TTGGGEEEEEET-----TTTEEEEEESSCCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEE
T ss_pred             ---cEECC--cccCcEEEEeeC-----CCceEEEEECCCCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEE
Confidence               00000  000011111111     012357899999999999999999876421  1112345655421    1111


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR  238 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~  238 (286)
                      ..+                                      +...+.+|+.+.|.|.+....|.+ .+.|+++|..+...
T Consensus       127 ~~~--------------------------------------~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~g~~~~~~  168 (215)
T 1c5d_H          127 PLA--------------------------------------PGCGDTTSSTVTLGCLVKGYFPEPVTVTWNSGALSSDVH  168 (215)
T ss_dssp             EEC--------------------------------------CCSSCCCCSSEEEEEEEEEEBSSCCEEEEGGGTTCCSCC
T ss_pred             ecc--------------------------------------CChhhccCCcEEEEEEEeeeEcCCcEEEEccCCccCceE
Confidence            000                                      011244566777777665443555 78888887654211


Q ss_pred             CCceeeecCCC--eeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        239 FPVNVSDLDSF--SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       239 ~~~~~~~~~~~--~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      ...........  ...|.  ....+| |.|+|.|.|..|.......+
T Consensus       169 ~~~~~~~~g~~~~~s~L~--~~~~~~-g~ytC~v~n~~~~~~~~~~~  212 (215)
T 1c5d_H          169 TFPAVLQSGLYTLTSSVT--SSTWPS-QTVTCNVAHPASSTKVDKKL  212 (215)
T ss_dssp             BCCCEEETTEEEEEEEEE--ESSTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ecCcccCCCCEEEEEEEe--cccCCC-CeEEEEEEeCCCCccEEEec
Confidence            10001110100  11233  344456 99999999999886655443

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.64  E-value=9.4e-16  Score=106.82  Aligned_cols=85  Identities=28%  Similarity=0.495  Sum_probs=70.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++||..+..+.+.....  .  .+....|.|.+++.+|+|.|+|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~--~--~~~~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNGRTVQSDDLHKMIV--S--EKGLHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETTEEECCCSSSCEEE--E--TTTEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECCEECcCCCcEEEEE--c--CCCeEEEEECCCCcccCEEEEEE
Confidence            7888888888999999999999999999999999999999987655432211  1  12224699999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.|..|...
T Consensus        81 a~n~~g~~~   89 (100)
T 2kdg_A           81 AKNRAGEAT   89 (100)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCCeEE
Confidence            999998754

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.63  E-value=1.7e-15  Score=125.93  Aligned_cols=224  Identities=14%  Similarity=0.192  Sum_probs=77.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +.+.+.+.++.+|+++.|.|.+. .+.|. +.|.-.   +... ...      ..+.....|.|.++..+  |.|.|++.
T Consensus         2 ~~v~P~~~~V~~G~sv~l~Cs~~-c~~p~~~~~~t~---l~~~-~~~------~~g~~~~~~~l~~v~~~--~~y~C~~~   68 (291)
T 1mq8_A            2 TSVSPSKVILPRGGSVLVTCSTS-CDQPKLLGIETP---LPKK-ELL------LPGNNRKVYELSNVQED--SQPMCYSN   68 (291)
T ss_dssp             EEEECSEEEECTTCEEEEEEEEC-CSSCSEEEEECS---SCCC-CCC------CSCSSEEEEEEESCCSC--CCCEEEEE
T ss_pred             eEEeCCccEEcCCCeEEEEEeCC-CCCCccceEEec---CCCc-ccc------cCCCceEEEEEEecccC--CeEEEEEE
Confidence            56677888999999999999986 45555 888531   1111 000      01222234778888743  46999996


Q ss_pred             cCCEEEE----Ee----------------------------cCCCCC---eeEEEeeCCccCcCCC-----CcceEEEcc
Q psy15667         84 NRAGTCE----IT----------------------------PYDSGP---YLIAWFKDGRQIPGRT-----SSTSLVINP  123 (286)
Q Consensus        84 n~~g~~~----~~----------------------------~~~~~~---~~~~W~~~g~~l~~~~-----~~~~l~i~~  123 (286)
                      ...-..+    +.                            ..+..|   ..|+|||+++.+....     ....|.+..
T Consensus        69 ~~~~~~~~~v~l~V~~~P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~~~~~~~~~l~~~~  148 (291)
T 1mq8_A           69 CPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPAVGEPAEVTTTVLV  148 (291)
T ss_dssp             CSSCEEEEECEEEECBCCSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEECCBTTEEEEEECCC
T ss_pred             cCCccEEEEEEEEEecCCCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccCCCCCceEEEEeee
Confidence            4421111    10                            011122   2589999998875321     123455444


Q ss_pred             CCCCCCeeEEEEEEcCCcc-------eeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccc
Q psy15667        124 VGREDRGIYQCIARRSDGD-------VAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIE  196 (286)
Q Consensus       124 v~~~d~G~Y~C~a~~~~g~-------~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~  196 (286)
                      ...+|.+.|+|.|.|..+.       ..+....|+|+.+|.....                                 +.
T Consensus       149 ~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~---------------------------------~~  195 (291)
T 1mq8_A          149 RRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQ---------------------------------LV  195 (291)
T ss_dssp             SSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC--------------------------------------------
T ss_pred             eeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCce---------------------------------ec
Confidence            4444445999999986542       1122345555544321000                                 00


Q ss_pred             ccccccCCCCCCCeEEEEEeeecCCCC--CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEccc---CCC--CCeEEEEE
Q psy15667        197 SFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV---SAA--HSGEYTCV  269 (286)
Q Consensus       197 ~~~~~~~~~~~g~~~~l~c~~~~~~p~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v---~~~--d~G~Y~C~  269 (286)
                         . ...+.+|+.+.|.|.+....|+  ..+.|.++|+.+......   .    +..+.+...   ..+  +++.|+|.
T Consensus       196 ---~-p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~~~g~~l~~~~~~---~----g~~~~~~~~~~~~~~~~~~~~~~C~  264 (291)
T 1mq8_A          196 ---S-PRVLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTY---G----NDSFSAKASVSVTAEDEGTQRLTCA  264 (291)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ---C-CcCccCCCeEEEEEEcCCCCCCcccEEEEEECCEecCceeee---c----CCeEEEEEecceeEcCCCCEEEEEE
Confidence               0 0124566666666665433343  358899999887542111   1    112233222   343  47777788


Q ss_pred             EEecccceeeEEEEEE
Q psy15667        270 ASNTAAQARYSSKLQV  285 (286)
Q Consensus       270 a~N~~g~~~~~~~L~V  285 (286)
                      |.|........-.|.|
T Consensus       265 ~~~~~~~~~~~~~l~v  280 (291)
T 1mq8_A          265 VILGNQSQETLQTVTI  280 (291)
T ss_dssp             ----------------
T ss_pred             EEeCCcceEEEEEEEE
Confidence            8875444444444443

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=6.4e-16  Score=107.88  Aligned_cols=78  Identities=23%  Similarity=0.418  Sum_probs=67.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++++.+|++++|.|.+  .|.|.+.|+|||..|..+.++.+..    .+ ....|.|.++..+|+|.|+|
T Consensus         6 ~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g~~l~~~~r~~i~~----~~-~~~~L~I~~v~~~D~G~Y~C   78 (100)
T 2yuz_A            6 SGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNGLPVQESDRLKVVQ----KG-RIHKLVIANALTEDEGDYVF   78 (100)
T ss_dssp             CCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETTEECCCCSSEEEEE----CS-SEEEEEESSCCGGGCSEEEE
T ss_pred             CCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECCEECCCCCcEEEEE----eC-CEEEEEECCCChhhCEEEEE
Confidence            48899999999999999999999999  8999999999999998888876521    22 23469999999999999999


Q ss_pred             EEEcC
Q psy15667         81 VAENR   85 (286)
Q Consensus        81 ~a~n~   85 (286)
                      .|.|.
T Consensus        79 ~a~N~   83 (100)
T 2yuz_A           79 APDAY   83 (100)
T ss_dssp             EESSS
T ss_pred             EEcCC
Confidence            99997

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.62  E-value=5.2e-14  Score=113.37  Aligned_cols=78  Identities=19%  Similarity=0.316  Sum_probs=45.6

Q ss_pred             CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeee-cC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD-LD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~-~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .|+.+.|.|.+....| +..+.|+++|..+.......... ..  .....|.|......| |.|+|.|.|..+.......
T Consensus       146 ~g~~v~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~  224 (232)
T 3qhz_H          146 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKR  224 (232)
T ss_dssp             --CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEEEeeEeCCCeEEEEEECCEecceeeccceeCCCCCEEEEEEEEEchhhcCC-CEEEEEEEeCCCCccEEEE
Confidence            4555555555543333 34567887775331100000000 00  013468899999999 9999999999988877776


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.+
T Consensus       225 l~~  227 (232)
T 3qhz_H          225 VEP  227 (232)
T ss_dssp             CCC
T ss_pred             eCC
Confidence            654

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.61  E-value=1.7e-15  Score=105.32  Aligned_cols=82  Identities=27%  Similarity=0.546  Sum_probs=69.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+........      .+  ...|.|.++..+|+|.|+|.
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~------~~--~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQYARSTCE------AG--VAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCSSCCCEEE------TT--EEEEEECSCCTTCCBCEEEE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECcccceEee------CC--eEEEEECCCChhhCEEEEEE
Confidence            78899899999999999999999999999999999999988875443221      11  23589999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        83 a~N~~g~~~~   92 (99)
T 2yr3_A           83 AENALGQVSC   92 (99)
T ss_dssp             EECSSCEEEE
T ss_pred             EEECCCeEEE
Confidence            9999987653

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.61  E-value=2e-15  Score=104.24  Aligned_cols=80  Identities=28%  Similarity=0.498  Sum_probs=69.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.| |.+.|+|||..+..+.++.+.      +.   .|.|.+++.+|+|.|+|
T Consensus         8 ~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~------~~---~L~i~~~~~~D~G~Y~C   77 (95)
T 2ckn_A            8 QPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLVESNRTRIT------GE---EVEVRDSIPADSGLYAC   77 (95)
T ss_dssp             CSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTTBCCCCCSSEEEC------SS---EEEESSCCGGGSEEEEE
T ss_pred             CCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECCEecCCCCCEEEe------CC---EEEECCCChHHCEEEEE
Confidence            378888888899999999999999999998 899999999999877776542      11   48999999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        78 ~a~n~~g~~~   87 (95)
T 2ckn_A           78 VTSSPSGSDT   87 (95)
T ss_dssp             EEEETTEEEE
T ss_pred             EeccCCCcEE
Confidence            9999988754

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.61  E-value=8.9e-15  Score=126.54  Aligned_cols=68  Identities=16%  Similarity=0.255  Sum_probs=40.7

Q ss_pred             CCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeeec-C---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        208 GARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDL-D---SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       208 g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~-~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      |+.+.|.|.+....| .+.|+|+|||..+........... +   .....|.|.....+|.|.|+|.|.|..-
T Consensus       289 g~~~~L~C~~~g~~P~~i~v~W~k~g~~~~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~YtC~v~h~~l  361 (376)
T 2aty_A          289 KDKVSLTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNTFTCSVLHEGL  361 (376)
T ss_pred             CCceEEEEEEEEeECCCcEEEEEECCEECCCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCcEEEEEEeCCC
Confidence            444555555443222 467888888887643221111111 1   1134577888778889999999999864

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.61  E-value=1.5e-14  Score=118.58  Aligned_cols=33  Identities=24%  Similarity=0.464  Sum_probs=27.5

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG   40 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~   40 (286)
                      .+..+++.+|++++|.|.+.+.|  .+.+.|+|+.
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~   40 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQA   40 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEEC
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEEC
Confidence            35567899999999999999876  6789999853

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.60  E-value=3.8e-15  Score=106.88  Aligned_cols=86  Identities=24%  Similarity=0.380  Sum_probs=72.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+.. ..++.+..    .+.....|.|.+++.+|+|.|+|
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C   90 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQ----DNTGRVTLLIKDVNKKDAGWYTV   90 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEE----CTTCEEEEEEEEECGGGCEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEe----CCCCeEEEEECCCCcccCEEEEE
Confidence            78999999999999999999999999999999999999999874 45554321    22223369999999999999999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .|.|..|....
T Consensus        91 ~a~N~~G~~~~  101 (116)
T 2kkq_A           91 SAVNEAGVTTC  101 (116)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEcCCCeEEE
Confidence            99999987643

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=2.6e-15  Score=106.57  Aligned_cols=86  Identities=24%  Similarity=0.504  Sum_probs=71.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++|+..+.. ..++.+..    ..+....|.|.+++.+|+|.|+
T Consensus         7 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~   82 (110)
T 2dm2_A            7 GAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQR----DLDGTCSLHTTASTLDDDGNYT   82 (110)
T ss_dssp             CCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEE----CTTCEEEEEESSCCTTTCSCCE
T ss_pred             CCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEE----CCCcEEEEEECCCChhhCEEEE
Confidence            489999999999999999999999999999999999999998875 45554321    1122246999999999999999


Q ss_pred             EEEEcCCEEEE
Q psy15667         80 CVAENRAGTCE   90 (286)
Q Consensus        80 C~a~n~~g~~~   90 (286)
                      |.|.|..|...
T Consensus        83 C~a~N~~g~~~   93 (110)
T 2dm2_A           83 IMAANPQGRIS   93 (110)
T ss_dssp             EEEECTTCCEE
T ss_pred             EEEEECCCeEE
Confidence            99999988764

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.60  E-value=4.1e-14  Score=114.60  Aligned_cols=80  Identities=18%  Similarity=0.268  Sum_probs=49.0

Q ss_pred             CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +..|+.+.|.|.+....|. ..+.|+++|..+...........+   .....|.|.....+| |.|+|.+.|..+.....
T Consensus       152 ~~~g~~v~l~C~~~~~~p~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  230 (239)
T 3tv3_H          152 STSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  230 (239)
T ss_dssp             C--TTEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEEE
T ss_pred             hccCCcEEEEEEEeeEeCCCeEEEEEECCccCceEecCceECCCCCEEEEEEEEEchhhcCC-CEEEEEEEECCCCceEE
Confidence            3456677777766554443 357788887643211000000000   113468899998899 99999999999887777


Q ss_pred             EEEEE
Q psy15667        281 SKLQV  285 (286)
Q Consensus       281 ~~L~V  285 (286)
                      ..|.+
T Consensus       231 ~~l~~  235 (239)
T 3tv3_H          231 KRVEP  235 (239)
T ss_dssp             EECCC
T ss_pred             EEecc
Confidence            76654

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.59  E-value=9.5e-16  Score=129.73  Aligned_cols=136  Identities=15%  Similarity=0.240  Sum_probs=90.7

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC-CCC---eeEEeeCC-EEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN-PTP---DIGWTLDG-FELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG   76 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p---~v~W~~~~-~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G   76 (286)
                      .+...+....+.+|++++|.|.+.|. |.|   .|.|++++ ..+........   ...++.  ....|.|.++..+|+|
T Consensus       115 v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~---~~~~g~~~~~~~L~I~~~~~~D~G  191 (323)
T 2wqr_A          115 AYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEE---KQRNGTLTVTSTLPVGTRDWIEGE  191 (323)
T ss_dssp             EEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEE---ECTTSCEEEEEEEECCHHHHHTTC
T ss_pred             EEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCc---cCCCCCEEEEEEEEECHHHccCCC
Confidence            34444555578899999999999885 566   89999975 44432222111   001111  2235999999999999


Q ss_pred             EEEEEEEcCCE----EEEEe--------------cC-----------------CCCC--eeEEEeeCCccCcCC------
Q psy15667         77 EYACVAENRAG----TCEIT--------------PY-----------------DSGP--YLIAWFKDGRQIPGR------  113 (286)
Q Consensus        77 ~Y~C~a~n~~g----~~~~~--------------~~-----------------~~~~--~~~~W~~~g~~l~~~------  113 (286)
                      .|+|.|.|..+    ...+.              +.                 +..|  ..+.|+|||..+...      
T Consensus       192 ~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~  271 (323)
T 2wqr_A          192 TYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQ  271 (323)
T ss_dssp             CEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECC
T ss_pred             CEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEEECCEECCCCceeecC
Confidence            99999998642    11110              00                 0012  269999999987531      


Q ss_pred             ---C------CcceEEEccCCCCCCeeEEEEEEcCCcc
Q psy15667        114 ---T------SSTSLVINPVGREDRGIYQCIARRSDGD  142 (286)
Q Consensus       114 ---~------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~  142 (286)
                         .      ..+.|.|.++..+|+|.|+|.|.|....
T Consensus       272 ~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          272 PRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             CEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             cccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence               0      1245889999999999999999997654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.59  E-value=2.8e-14  Score=116.52  Aligned_cols=197  Identities=15%  Similarity=0.215  Sum_probs=103.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +...+..+++.+|++++|.|.+.+.+.+.+.|+|...  .....+.              +...     +.+.+.-... 
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~--~~~~~~~--------------~~~~-----~~~~~~~~~~-   61 (253)
T 3to4_D            4 LEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDL--QKQLQWL--------------FTLR-----SPGDKEVKSL-   61 (253)
T ss_dssp             CEEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEET--TCCEEEE--------------EEEC-----STTCEEEEEE-
T ss_pred             EEeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECC--CCCcEEE--------------EEEC-----CCcceecCCc-
Confidence            3445667789999999999999888999999997421  1111111              0000     0000000000 


Q ss_pred             CCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc-----eeeeeeEEEEcCCCcee
Q psy15667         85 RAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD-----VAQGSAELQLGGLPYVR  159 (286)
Q Consensus        85 ~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~-----~~~~~~~l~v~~~~~~~  159 (286)
                       .+           ..+...+++       ... |.|.++..+|+|.|+|.+.+..+.     .......|.|.......
T Consensus        62 -~~-----------~R~~~~~~~-------~~~-L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~  121 (253)
T 3to4_D           62 -PG-----------ADYLATRVT-------DTE-LRLQVANMSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNV  121 (253)
T ss_dssp             -TT-----------EEEEEECCS-------SSC-CEEEEESCSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTC
T ss_pred             -cC-----------CcEEEEeCC-------CCe-EEEccCChhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCC
Confidence             00           011111111       112 999999999999999999876431     11112344443211000


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPR  238 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~  238 (286)
                      ..|...+.                      . +        ....+.+|+.+.|.|.+....|++ .+.|+|+|..+...
T Consensus       122 ~~P~v~~~----------------------~-~--------~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~k~g~~l~~~  170 (253)
T 3to4_D          122 FPPEVAVF----------------------E-P--------SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSG  170 (253)
T ss_dssp             BCCEEEEE----------------------E-C--------CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECTT
T ss_pred             CCCeEEEe----------------------C-C--------ChhhcccCCceEEEEEEceEECCcEEEEEEECCEECCCc
Confidence            11111110                      0 0        001122356677777766545555 78899999877543


Q ss_pred             CCceeee-------cCC---CeeeEEEcccCCCC-CeEEEEEEEecc
Q psy15667        239 FPVNVSD-------LDS---FSSLLSINSVSAAH-SGEYTCVASNTA  274 (286)
Q Consensus       239 ~~~~~~~-------~~~---~~~~L~i~~v~~~d-~G~Y~C~a~N~~  274 (286)
                      .......       .+.   ....|.|.....+| .|.|+|.+.|..
T Consensus       171 ~~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~~~~ytC~v~h~~  217 (253)
T 3to4_D          171 VSTDPQPLKEQPALNDSRYALSSRLRVSATFWQNPRNHFRCQVQFYG  217 (253)
T ss_dssp             EEECSSCEESSTTCTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECC
T ss_pred             eecccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEeCC
Confidence            2110000       000   12467888888888 789999999974

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.59  E-value=1.1e-14  Score=109.88  Aligned_cols=86  Identities=24%  Similarity=0.475  Sum_probs=73.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|+|++..+..+.++.+..    ..+....|.|.+++..|+|.|+|.
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECCEECCCCCcEEEEE----CCCCeEEEEECCCChhcCEEEEEE
Confidence            6889999999999999999999999999999999999999998777765421    112234699999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus       117 a~N~~G~~~~  126 (154)
T 1fhg_A          117 AVNSLGEATC  126 (154)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCCeEEE
Confidence            9999987643

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.58  E-value=1.2e-14  Score=99.35  Aligned_cols=76  Identities=24%  Similarity=0.464  Sum_probs=66.4

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+|.|...+..+.+.+|++++|.|.+.|+|.|.+.|+|++..+....+              ..|.|.+++.+|+|.|+|
T Consensus         2 ~~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C   67 (91)
T 3bfo_A            2 SKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--------------KLYMVPYVDLEHQGTYWC   67 (91)
T ss_dssp             CCCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETTEECTTCCS--------------SEEEESSCCGGGCEEEEE
T ss_pred             CceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCCeeCCcCCC--------------CeEEECCCCHHhCEEEEE
Confidence            368888899999999999999999999999999999999998865422              148899999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        68 ~a~n~~g~~~   77 (91)
T 3bfo_A           68 HVYNDRDSQD   77 (91)
T ss_dssp             EEECSSCEEE
T ss_pred             EEEcCCCCEE
Confidence            9999988643

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=1.4e-15  Score=107.03  Aligned_cols=87  Identities=16%  Similarity=0.268  Sum_probs=70.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.+.|. +.+.|+|||..|..+.++.+..    .+. ...|.|.+++.+|+|.|+
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~----~~~-~~~L~I~~v~~~D~G~Y~   81 (104)
T 2eny_A            7 GHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATR----QGR-KYILVVREAAPSDAGEVV   81 (104)
T ss_dssp             CCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEE----ETT-EEEEEECSCCTTTCSCEE
T ss_pred             CCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEE----cCC-EEEEEECCCCHHHCEEEE
Confidence            3678888899999999999999999999875 4899999999998777775432    222 346999999999999999


Q ss_pred             EEEEcCCEEEEEe
Q psy15667         80 CVAENRAGTCEIT   92 (286)
Q Consensus        80 C~a~n~~g~~~~~   92 (286)
                      |.|.|....+.+.
T Consensus        82 C~a~~~~~~a~L~   94 (104)
T 2eny_A           82 FSVRGLTSKASLI   94 (104)
T ss_dssp             EEETTEEEEECEE
T ss_pred             EEECCeeEEEEEE
Confidence            9998876555443

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.58  E-value=8.4e-14  Score=112.08  Aligned_cols=35  Identities=14%  Similarity=0.174  Sum_probs=28.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD   39 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~   39 (286)
                      +...+..+++.+|++++|.|.+.+.  +.+.+.|+|.
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~   40 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQ   40 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEE
Confidence            4455677789999999999999874  6678999985

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.58  E-value=8.3e-15  Score=101.75  Aligned_cols=81  Identities=20%  Similarity=0.221  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....+..+.........|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        17 v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   95 (99)
T 1g1c_A           17 VGQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLL   95 (99)
T ss_dssp             EETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEE-EeCCCEEEEEECCEECCCCCCEEEEEcCCCEEEEEECCCCcCCCEEEEEEEEECCCcEEEEEEEE
Confidence            34555555555554 55667888999999887665554433233456899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        96 V~   97 (99)
T 1g1c_A           96 VQ   97 (99)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=5.6e-15  Score=103.50  Aligned_cols=87  Identities=22%  Similarity=0.444  Sum_probs=72.2

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.+ |.+.+.|+||+..+..+.++.+..    .+. ...|.|.+++.+|+|.|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~~~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~C   80 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRKAIRKSQKYDVVC----EGT-MAMLVIRGASLKDAGEYTC   80 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSCBCCCSSSEEEEE----ETT-EEEEEESSCCTTTCSEEEE
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCEEccCCCCEEEEE----CCC-EEEEEECCCCcccCEEEEE
Confidence            3889999999999999999999999997 888999999999998777775432    222 3469999999999999999


Q ss_pred             EEEcCCEEEEEec
Q psy15667         81 VAENRAGTCEITP   93 (286)
Q Consensus        81 ~a~n~~g~~~~~~   93 (286)
                      .|.|....+.+..
T Consensus        81 ~a~n~~~~~~l~V   93 (103)
T 2edf_A           81 EVEASKSTASLHV   93 (103)
T ss_dssp             ECSSCEEEEEEEE
T ss_pred             EEccCCcEEEEEE
Confidence            9999766655543

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.58  E-value=7.2e-15  Score=102.34  Aligned_cols=81  Identities=36%  Similarity=0.694  Sum_probs=68.2

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.|+|.|.+.|++++..+.. +.++.+.    ..+    .|.|.+++.+|+|.|+
T Consensus         7 ~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~----~~~----~L~i~~v~~~d~G~Y~   78 (100)
T 2edj_A            7 GPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRATIQ----EQG----TLQIKNLRISDTGTYT   78 (100)
T ss_dssp             SSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCEEC----TTC----CEEEESCCTTTCCEEE
T ss_pred             CCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEEEc----CCC----EEEEccCCcccCEEEE
Confidence            389999999999999999999999999999999999999998873 4444321    122    4889999999999999


Q ss_pred             EEEEcCCEEE
Q psy15667         80 CVAENRAGTC   89 (286)
Q Consensus        80 C~a~n~~g~~   89 (286)
                      |.|.|..|..
T Consensus        79 C~a~n~~g~~   88 (100)
T 2edj_A           79 CVATSSSGET   88 (100)
T ss_dssp             EEEECSSCCC
T ss_pred             EEEEcCCCCE
Confidence            9999987743

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.58  E-value=2.4e-14  Score=103.23  Aligned_cols=87  Identities=15%  Similarity=0.256  Sum_probs=64.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEe-ccc-ceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS-GHG-DVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~-~~~-~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||+|.  ..+  ...+..+.|.|.+.|+|.|.|+|+|||.+|..+.++.+..... ... .....|.|.+++..|+|.|+
T Consensus         4 pP~I~--l~~--~~~~~~~~l~c~v~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Yt   79 (126)
T 1he7_A            4 PASVQ--LHT--AVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYT   79 (126)
T ss_dssp             CCCCC--CCC--CCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEE
T ss_pred             CCEEE--ccC--CccCccEEEEEEEeeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEE
Confidence            67762  222  3477899999999999999999999999998776643321100 001 01235899999999999999


Q ss_pred             EEEEcCCEEEEEe
Q psy15667         80 CVAENRAGTCEIT   92 (286)
Q Consensus        80 C~a~n~~g~~~~~   92 (286)
                      |.|.|..|....+
T Consensus        80 C~A~N~~G~~~~t   92 (126)
T 1he7_A           80 LLAANPFGQASAS   92 (126)
T ss_dssp             EEEEETTEEEEEE
T ss_pred             EEEEECCCeEEEE
Confidence            9999999987654

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.58  E-value=2.1e-15  Score=106.44  Aligned_cols=83  Identities=27%  Similarity=0.429  Sum_probs=70.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|++++|.|.+.|.|.|.+.|+++|..+..+.++.+..    . .....|.|.+++.+|+|.|+|.
T Consensus        14 ~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~----~-~~~~~L~I~~v~~~D~G~Y~C~   88 (106)
T 1nct_A           14 AARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT----T-KYKSTFEISSVQASDEGNYSVV   88 (106)
T ss_dssp             CCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSCCTTCSSEEEEE----C-SSEEEEEECCCCSSCCSEEEEC
T ss_pred             CCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEEE----C-CCEEEEEECcCCchhCEEEEEE
Confidence            6889999999999999999999999999999999999999988777765421    1 1123699999999999999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.|..|..
T Consensus        89 a~N~~G~~   96 (106)
T 1nct_A           89 VENSEGKQ   96 (106)
T ss_dssp             CBCSSCBC
T ss_pred             EEeCCCeE
Confidence            99987753

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.58  E-value=2.9e-15  Score=106.22  Aligned_cols=86  Identities=31%  Similarity=0.519  Sum_probs=71.1

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+..+.+.....    ..+....|.|.+++.+|+|.|+|
T Consensus         8 ~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~D~G~Y~C   83 (110)
T 2dm3_A            8 FRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKPVRPDSAHKMLV----RENGVHSLIIEPVTSRDAGIYTC   83 (110)
T ss_dssp             CCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSBCCCCSSEEEEE----CTTSCEEEEESSCCGGGCSBBCE
T ss_pred             CCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCceEEEE----ecCCeEEEEEeeCCcccCEEEEE
Confidence            37999999999999999999999999999999999999999887655432211    11222469999999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        84 ~a~n~~g~~~   93 (110)
T 2dm3_A           84 IATNRAGQNS   93 (110)
T ss_dssp             EEECSSCEEE
T ss_pred             EEECCCCEEE
Confidence            9999988754

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.58  E-value=3.1e-14  Score=99.83  Aligned_cols=87  Identities=21%  Similarity=0.390  Sum_probs=63.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|.. ..  ....|+.+.|.|.+.|+|.|.++|+|||..|..+.++...............|.|.++..+|+|.|+|.
T Consensus         4 pP~i~~-~~--~~~~~~~~~~~c~v~G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   80 (103)
T 1wwb_X            4 APTITF-LE--SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI   80 (103)
T ss_dssp             CCCCCC-CC--CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCEEEe-cc--CceECcEEEEEEEEEEeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEE
Confidence            666541 11  135688999999999999999999999999987655322111111112234599999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        81 A~N~~G~~~~   90 (103)
T 1wwb_X           81 AKNEYGKDEK   90 (103)
T ss_dssp             EECSSCEEEE
T ss_pred             EEeCCCcEeE
Confidence            9999998654

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.58  E-value=2.6e-14  Score=98.89  Aligned_cols=84  Identities=15%  Similarity=0.321  Sum_probs=69.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +.+...+.+..+.+|++++|.|.+.|. |.|.+.|++++..+..+.++.+..    .++ ...|.|.+++.+|+|.|+|.
T Consensus         2 ~~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~----~~~-~~~L~i~~v~~~D~G~Y~C~   76 (97)
T 2bk8_A            2 AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITY----EDG-VAILYVKDITKLDDGTYRCK   76 (97)
T ss_dssp             CCEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEE----ETT-EEEEEECSCCGGGCEEEEEE
T ss_pred             CceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEE----cCC-eEEEEEecCChhhCeEEEEE
Confidence            345566778899999999999999997 999999999999998777765422    122 23699999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus        77 a~n~~g~~~~   86 (97)
T 2bk8_A           77 VVNDYGEDSS   86 (97)
T ss_dssp             EECSSCEEEE
T ss_pred             EECCCCeEeE
Confidence            9999887653

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.57  E-value=1.1e-14  Score=104.66  Aligned_cols=82  Identities=21%  Similarity=0.305  Sum_probs=65.4

Q ss_pred             CCeeEe---ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTY---SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~---~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|.+   ...++++.+|+++.|.|.+.|+|.|.+.|+|||..+. ..++.+.     ..+....|.|.++..+|+|.|
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~l~-~~~~~~~-----~~~~~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAPLD-TSRVHVR-----TSDFDTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEECC-CSSCEEE-----ECSSEEEEEESSCCTTTCEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEECC-CCcEEEE-----ECCCeEEEEECCCChhcCEEE
Confidence            566654   2456789999999999999999999999999999997 3444331     112234599999999999999


Q ss_pred             EEEEEcCCEEE
Q psy15667         79 ACVAENRAGTC   89 (286)
Q Consensus        79 ~C~a~n~~g~~   89 (286)
                      +|.|.|..|..
T Consensus        95 ~C~a~N~~G~~  105 (118)
T 2e7c_A           95 ELSVQIENMKD  105 (118)
T ss_dssp             EEEEECSSCEE
T ss_pred             EEEEEeCCCeE
Confidence            99999998864

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.57  E-value=1.6e-14  Score=119.93  Aligned_cols=129  Identities=12%  Similarity=0.170  Sum_probs=88.3

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE-
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE-   90 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~-   90 (286)
                      ..+.+|+.+.|.|.+. .|.|.++|++++........+.      ....    +.    ...|+|.|+|.|.|..+... 
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~------~~~~----~~----~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYD------HQRG----FS----GIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEE------TTTE----EE----ECCCSSEEEEEEEETTEEEEC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeec------CCcC----ee----eeccCcEEEEEEEeCCceeee
Confidence            5688999999999998 7888999998753322211111      0111    11    36799999999997665421 


Q ss_pred             ----Ee-----------------------------cCCCCCeeEEEeeCCccCcCC-------------CCcceEEEccC
Q psy15667         91 ----IT-----------------------------PYDSGPYLIAWFKDGRQIPGR-------------TSSTSLVINPV  124 (286)
Q Consensus        91 ----~~-----------------------------~~~~~~~~~~W~~~g~~l~~~-------------~~~~~l~i~~v  124 (286)
                          +.                             ..+.+++.+.|+++++.....             .....|.|.++
T Consensus       170 ~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v  249 (289)
T 3mjg_X          170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPVTDFLLDMPYHIRSILHIPSA  249 (289)
T ss_dssp             CCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSCCCCCEEEESCTTTTEEEEEEEESSC
T ss_pred             eeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCCcccccccccCCcceEEEEEEEEccc
Confidence                10                             011235689999877654221             12367999999


Q ss_pred             CCCCCeeEEEEEEcCCcceeeeeeEEEEcCCC
Q psy15667        125 GREDRGIYQCIARRSDGDVAQGSAELQLGGLP  156 (286)
Q Consensus       125 ~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~  156 (286)
                      ..+|+|.|+|.|.|..|.. ..++.|+|...+
T Consensus       250 ~~~D~G~Y~C~a~N~~G~~-~~~~~l~v~~~~  280 (289)
T 3mjg_X          250 ELEDSGTYTCNVTESVNDH-QDEKAINITVVE  280 (289)
T ss_dssp             CSSCCEEEEEEEEETTTTE-EEEEEEEEEEEC
T ss_pred             ChhhCcEEEEEeecCCCCc-eeEEEEEEEEEe
Confidence            9999999999999999986 457778775443

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.57  E-value=4.2e-15  Score=104.34  Aligned_cols=85  Identities=24%  Similarity=0.387  Sum_probs=70.4

Q ss_pred             CCeeEecccc---ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIE---QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~---~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.|...+.+   +++.+|++++|.|.+.+.|.+ +.|+||+..+..+.++.+..    .+ ....|.|.+++.+|+|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g~~~~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDGQKVEESELLVVKM----DG-RKHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETTEECCCBTTBEEEE----ET-TEEEEEESSCCTTTCEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCCEECCCCCCEEEEe----CC-CEEEEEECCCChhhCEEE
Confidence            6778777777   789999999999999999999 99999999998776765431    12 234699999999999999


Q ss_pred             EEEEEcCCEEEEEe
Q psy15667         79 ACVAENRAGTCEIT   92 (286)
Q Consensus        79 ~C~a~n~~g~~~~~   92 (286)
                      +|.|.|..+.+.+.
T Consensus        81 ~C~a~n~~~~~~l~   94 (104)
T 2e6p_A           81 ECRTEGVSAFFGVT   94 (104)
T ss_dssp             EEECSSCCCCEEEE
T ss_pred             EEEECCceEEEEEE
Confidence            99999987766554

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.57  E-value=5.9e-16  Score=123.34  Aligned_cols=72  Identities=15%  Similarity=0.319  Sum_probs=43.6

Q ss_pred             CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce--eeec----CC---CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN--VSDL----DS---FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~--~~~~----~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +.+|+.+.|.|.+....|+ +.+.|+|||..+.......  ....    ++   ....|.|.....+|.|.|+|.|.|..
T Consensus       119 ~~~g~~~~L~C~~~g~~P~~~~v~W~k~g~~l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~~~ytC~v~n~~  198 (214)
T 1ow0_A          119 LALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEA  198 (214)
T ss_dssp             TTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEECTT
T ss_pred             hccCCceEEEEEEeeeECCCcEEEEEECCEECCCCceeecCCcccccCCCCcEEEEEEEEECHHHccCCCEEEEEEECCC
Confidence            5567777788877644443 5899999998876441110  0111    10   12234444444456899999999986


Q ss_pred             cc
Q psy15667        275 AQ  276 (286)
Q Consensus       275 g~  276 (286)
                      -.
T Consensus       199 l~  200 (214)
T 1ow0_A          199 LP  200 (214)
T ss_dssp             CT
T ss_pred             CC
Confidence            43

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.57  E-value=8e-15  Score=102.78  Aligned_cols=84  Identities=21%  Similarity=0.337  Sum_probs=67.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.++.+.+|++++|.|.+.+ |.+.+.|+||+..|..+.  ++.+..    .+ ....|.|.+++.+|+|.|+
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~~l~~~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~   80 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV----EG-KKHILIIEGATKADAAEYS   80 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETTEECCCSTTCSEEEEE----ET-TEEEEEEEEECTTTCSEEE
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECCEECCCCCceEEEEEE----cC-CEEEEEECCCCcccCEEEE
Confidence            455888888999999999999999987 779999999999998766  544421    12 2346999999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|....+.+
T Consensus        81 C~a~n~~~~~~l   92 (103)
T 1x44_A           81 VMTTGGQSSAKL   92 (103)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCCcEEEEE
Confidence            999995444444

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.57  E-value=2.2e-14  Score=103.49  Aligned_cols=79  Identities=25%  Similarity=0.300  Sum_probs=64.4

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC------CCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      ..+..+.|.|.+ .|.|.|.|+|+|+|..+....+..+....      ...+.|.|.++..+|+|.|+|.|.|..|...+
T Consensus        13 ~~~~~~~l~c~v-~G~P~P~I~W~knG~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEE-eeeCCCeEEEEECCEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            356788899987 48999999999999999876654332211      12468999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15667        280 SSKLQV  285 (286)
Q Consensus       280 ~~~L~V  285 (286)
                      ++.|.|
T Consensus        92 t~~l~v   97 (126)
T 1he7_A           92 SIMAAF   97 (126)
T ss_dssp             EEEECC
T ss_pred             EEEEEE
Confidence            988865

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.57  E-value=5.8e-15  Score=105.95  Aligned_cols=90  Identities=26%  Similarity=0.433  Sum_probs=66.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCee-EeceEEecccce-eEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRF-VIGQFVSGHGDV-ISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~-~~~~~~~~~~~~-~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+..+... ........++.. ...|.|.+++.+|+|.|+
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~   88 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence            789999999999999999999999999999999999999988643210 000011112221 112333477899999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|....
T Consensus        89 C~a~N~~G~~~s  100 (117)
T 2v9t_A           89 CVARNYLGEAVS  100 (117)
T ss_dssp             EEEEETTEEEEC
T ss_pred             EEEEeCccceEe
Confidence            999999998753

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.56  E-value=1.2e-14  Score=117.77  Aligned_cols=44  Identities=16%  Similarity=0.422  Sum_probs=32.7

Q ss_pred             CCeeEecccccc-ccCCCcEEEEEEeecCC----CCeeEEeeCCEEcCC
Q psy15667          2 PPILTYSFIEQT-LQPGPAVSLKCIASGNP----TPDIGWTLDGFELPT   45 (286)
Q Consensus         2 ~p~~~~~~~~~~-~~~G~~~~l~C~~~g~p----~p~v~W~~~~~~l~~   45 (286)
                      |+++.+.+.... +..|+.++|.|.+.|.+    ...|+|++||..+..
T Consensus        23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g~~l~~   71 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHN   71 (240)
T ss_dssp             CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETTEEECC
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECCcccCC
Confidence            334444554555 77899999999999964    337999999998854

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.56  E-value=2.3e-13  Score=110.97  Aligned_cols=200  Identities=14%  Similarity=0.177  Sum_probs=103.2

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      .+...+..+.+.+|++++|.|.+. .+.+.+.|+++...  ....+.              +...+     .+.+.  ..
T Consensus         5 ~v~q~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~--~~~~~l--------------~~~~~-----~~~~~--~~   60 (252)
T 1oga_E            5 GITQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPG--QGLRLI--------------YYSQI-----VNDFQ--KG   60 (252)
T ss_dssp             CEECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTT--CCEEEE--------------EEESS-----TTCCE--EC
T ss_pred             cceEcCCeEEEcCCCcEEEEEEeC-CCCCEEEEEEECCC--CCeEEE--------------EEEcc-----Ccccc--CC
Confidence            455566778999999999999985 46789999986311  000111              00110     00000  00


Q ss_pred             cCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcc--eeeeeeEEEEcCCCceecC
Q psy15667         84 NRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGD--VAQGSAELQLGGLPYVRLI  161 (286)
Q Consensus        84 n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~--~~~~~~~l~v~~~~~~~~~  161 (286)
                      ..            ...+...++      ......|.|.++..+|+|.|.|.+.+..+.  .......|.|.........
T Consensus        61 ~~------------~~R~~~~~~------~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~  122 (252)
T 1oga_E           61 DI------------AEGYSVSRE------KKESFPLTVTSAQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFP  122 (252)
T ss_dssp             SS------------CTTEEECCS------STTBCCEEECSCCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBC
T ss_pred             cc------------CCcEEEEec------CCCEEEEEECcCChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCC
Confidence            00            001111111      123457999999999999999999885211  1111234554321000001


Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~  240 (286)
                      |...+.                      . +        ....+.+|+.+.|.|.+....|. +.+.|+|+|..+.....
T Consensus       123 P~v~~~----------------------~-~--------~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~l~~~~~  171 (252)
T 1oga_E          123 PEVAVF----------------------E-P--------SEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVS  171 (252)
T ss_dssp             CEEEEE----------------------C-C--------CHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEE
T ss_pred             CeEEEE----------------------C-C--------ChhhhccCCceEEEEEEeeEcCCCcEEEEEECCEECCCCcc
Confidence            111110                      0 0        00112346666777766544443 48889998887754321


Q ss_pred             ce--ee-----ecC---CCeeeEEEcccCCC-CCeEEEEEEEecccc
Q psy15667        241 VN--VS-----DLD---SFSSLLSINSVSAA-HSGEYTCVASNTAAQ  276 (286)
Q Consensus       241 ~~--~~-----~~~---~~~~~L~i~~v~~~-d~G~Y~C~a~N~~g~  276 (286)
                      ..  ..     ..+   .....|.|.....+ |.|.|+|.+.|....
T Consensus       172 ~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l~  218 (252)
T 1oga_E          172 TDPQPLKEQPALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQFYGLS  218 (252)
T ss_dssp             ECSSCEESCTTSTTCCEEEEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             cccccccccccCCCCCEEEEEEEEECHHHhccCCCEEEEEEEcCCCC
Confidence            10  00     001   01234777776654 678999999998654

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.56  E-value=1.1e-13  Score=111.85  Aligned_cols=71  Identities=13%  Similarity=0.300  Sum_probs=42.5

Q ss_pred             CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce---eeecCC---CeeeEEEcccCCCC-CeEEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN---VSDLDS---FSSLLSINSVSAAH-SGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~---~~~~~~---~~~~L~i~~v~~~d-~G~Y~C~a~N~~g  275 (286)
                      +.+|+.+.|.|.+....|. +.+.|+|+|..+.......   +...+.   ....|.|.....+| .|.|+|.|.|...
T Consensus       133 ~~~g~~~~L~C~~~g~~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~~~~ytC~v~~~~l  211 (238)
T 1bec_A          133 IANKQKATLVCLARGFFPDHVELSWWVNGKEVHSGVSTDPQAYKESNYSYCLSSRLRVSATFWHNPRNHFRCQVQFHGL  211 (238)
T ss_dssp             CSSSCSCSEEEEEEEEBSCCEEEEEEETTEEECTTEEECSSCEEEETTEEEEEEEECCCHHHHTCTTCEEEEEEEECCC
T ss_pred             cccCCceEEEEEEeeEeCCCcEEEEEECCEECCCceecccceEeCCCCCEEEEEEEEEcHHHhccCCCeEEEEEEcCCC
Confidence            4567777788877644454 4899999998875432110   111111   12234555555545 6789999999753

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.56  E-value=7e-15  Score=103.33  Aligned_cols=82  Identities=15%  Similarity=0.366  Sum_probs=67.0

Q ss_pred             CCeeEecccc-ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIE-QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.+ +.+.+|++++|.|.+ ++|.+.+.|+|||..|..+ .++.+..    .+. ...|.|.+++.+|+|.|+
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~l~~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~   88 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQEIQMSGSKYIFES----IGA-KRTLTISQCSLADDAAYQ   88 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSEECCCSSSSEEEE----ETT-EEEEEECSCSSSSCEEEE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEECCCCCCeEEEEe----cCC-EEEEEECCCCcccCEEEE
Confidence            7888888888 789999999999999 7999999999999999876 6665421    222 346999999999999999


Q ss_pred             EEEEcCCEEE
Q psy15667         80 CVAENRAGTC   89 (286)
Q Consensus        80 C~a~n~~g~~   89 (286)
                      |.|.+..+.+
T Consensus        89 C~a~~~~~~~   98 (104)
T 1pd6_A           89 CVVGGEKCST   98 (104)
T ss_dssp             EEETTEEECC
T ss_pred             EEECCCcEEE
Confidence            9997654443

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.56  E-value=6.2e-15  Score=103.90  Aligned_cols=79  Identities=22%  Similarity=0.366  Sum_probs=68.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+ +.|+||+..+..+.++.+..    .+ ....|.|.+++.+|+|.|+|
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~~~~~~~~~~~~----~~-~~~~L~I~~v~~~D~G~Y~C   80 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVEVRPSKRITISH----VG-RFHKLVIDDVRPEDEGDYTF   80 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCBCCCCSSCEEEE----ET-TEEEEEESSCCTTTCSCEEE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEECcCCCCEEEEE----eC-CEEEEEECCCCcCCCEEEEE
Confidence            48999999999999999999999999999888 99999999998777775431    22 23469999999999999999


Q ss_pred             EEEcC
Q psy15667         81 VAENR   85 (286)
Q Consensus        81 ~a~n~   85 (286)
                      .|.|.
T Consensus        81 ~a~n~   85 (106)
T 2dlt_A           81 VPDGY   85 (106)
T ss_dssp             EEETS
T ss_pred             EEccC
Confidence            99996

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.56  E-value=2.3e-15  Score=105.18  Aligned_cols=83  Identities=19%  Similarity=0.334  Sum_probs=68.0

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC----eeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN----RFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~----~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      .||.|...+.++.+.+|++++|.|.+.+.| +.+.|+|||..+..+.    ++.+.     ..+....|.|.++..+|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~i~~~~~~~~~~~~~-----~~~~~~~L~I~~~~~~D~G   80 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVELTREDSFKARYRFK-----KDGKRHILIFSDVVQEDRG   80 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCBCCCSCCSSCCCEEE-----ECSSEEEEECSSCCGGGCS
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEECCCCCCcceeEEEE-----ECCCEEEEEECCCChhhCE
Confidence            378899889999999999999999999999 9999999999987655    44432     1222346999999999999


Q ss_pred             EEEEEEEcCCEEE
Q psy15667         77 EYACVAENRAGTC   89 (286)
Q Consensus        77 ~Y~C~a~n~~g~~   89 (286)
                      .|+|.|.|....+
T Consensus        81 ~Y~C~a~n~~~~~   93 (101)
T 2edk_A           81 RYQVITNGGQCEA   93 (101)
T ss_dssp             BEEEECSSCEECC
T ss_pred             EEEEEEcCCcEEE
Confidence            9999999854433

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.55  E-value=1.9e-14  Score=98.86  Aligned_cols=78  Identities=21%  Similarity=0.294  Sum_probs=61.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCC--eeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDG--KPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g--~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++  ..+....  .+.. ......|.|.++..+|+|.|+|.|.|..|....++.
T Consensus        14 v~~G~~~~l~C~~~-g~P~p~i~W~k~~~~~~~~~~~--~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~   89 (93)
T 1wit_A           14 IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPEL--LVDA-KSSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFE   89 (93)
T ss_dssp             ECTTBCCEEEEEEE-CCSSCEEEEECSTTTCBCSTTS--EEEE-ETTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             EeCCCEEEEEEEEE-EcCCCEEEEEECCCCcccCCcE--EEEe-cCCEEEEEECCCChhcCEEEEEEEEcCCCeEEEEEE
Confidence            55677777777664 6778889999998  7765432  2222 133578999999999999999999999999999999


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.|+
T Consensus        90 l~V~   93 (93)
T 1wit_A           90 VIVQ   93 (93)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            9885

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.55  E-value=6.9e-15  Score=102.39  Aligned_cols=85  Identities=26%  Similarity=0.461  Sum_probs=65.6

Q ss_pred             CCeeEecc----ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSF----IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~----~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+    ..+.+.+|++++|.|.+.|.|.|.+.|++++..+..+.++..... . .+.  ..|.|.+++.+|+|.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~-~-~~~--~~L~i~~v~~~D~G~   79 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV-R-NQH--WSLIMESVVPSDKGN   79 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEE-E-GGG--TEEEECSCCGGGCEE
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCEEcccccccccEEE-e-cCe--EEEEEccCCcCCCEE
Confidence            67887554    345788999999999999999999999999999875443211011 1 111  248899999999999


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|..|...
T Consensus        80 Y~C~a~N~~g~~~   92 (100)
T 3caf_A           80 YTCVVENEYGSIN   92 (100)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEeCCCEEE
Confidence            9999999998764

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.55  E-value=5.8e-14  Score=97.13  Aligned_cols=81  Identities=17%  Similarity=0.319  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+....|.+.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        13 v~~G~~v~l~C~~~g~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   91 (97)
T 2bk8_A           13 GEEGGHVKYVCKIENYDQSTQVTWYFGVRQLENSEKYEITYE-DGVAILYVKDITKLDDGTYRCKVVNDYGEDSSYAELF   91 (97)
T ss_dssp             ECTTCCEEEEEEEESCCTTCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EcCCCcEEEEEEEeccCCCCEEEEEECCEECcCCCCEEEEEc-CCeEEEEEecCChhhCeEEEEEEECCCCeEeEEEEEE
Confidence            566777777777653347889999999998877666655432 2345899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        92 V~   93 (97)
T 2bk8_A           92 VK   93 (97)
T ss_dssp             ET
T ss_pred             EE
Confidence            85

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.55  E-value=1.7e-13  Score=111.65  Aligned_cols=77  Identities=21%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      .|+.+.|.|.+....| +..+.|+++|..+...........+   .....|.|.....+| |.|+|.+.|..+.......
T Consensus       155 ~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~  233 (248)
T 3u2s_H          155 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKK  233 (248)
T ss_dssp             --CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGBTT-BCCEEEEEEGGGTEEEEEE
T ss_pred             CCCcEEEEEEEeeEECCCeEEEEeECCccCceeecCceECCCCCEEEEEEEEEChhhcCC-CeEEEEEEECCCCcceEEE
Confidence            4555666665554334 4567788877543110000000000   113468888888888 9999999999887766665


Q ss_pred             EE
Q psy15667        283 LQ  284 (286)
Q Consensus       283 L~  284 (286)
                      |.
T Consensus       234 l~  235 (248)
T 3u2s_H          234 VE  235 (248)
T ss_dssp             CC
T ss_pred             Ec
Confidence            54

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.54  E-value=1.6e-14  Score=99.61  Aligned_cols=83  Identities=13%  Similarity=0.285  Sum_probs=67.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|++++|.|.+ +.|.+.+.|+||+..|..+.++.+..    .+. ...|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~l~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~C~   81 (95)
T 2k1m_A            8 VSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGSDISASNKYGLAT----EGT-RHTLTVREVGPADQGSYAVI   81 (95)
T ss_dssp             CCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSSEECSSTTCEEEE----ETT-EEEEEESSCCTTCCSEEEEE
T ss_pred             CCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCEECCCCCcEEEEE----cCC-EEEEEEcCCCcccCEEEEEE
Confidence            4678888888999999999999999 88999999999999998777765422    222 34699999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.+....+.
T Consensus        82 ag~~~~~~~   90 (95)
T 2k1m_A           82 AGSSKVKFD   90 (95)
T ss_dssp             ETTEEEEEE
T ss_pred             ECCceEEEE
Confidence            966444443

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.54  E-value=4.5e-13  Score=107.71  Aligned_cols=34  Identities=15%  Similarity=0.383  Sum_probs=28.9

Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..|.|.....+| |.|+|.+.|..+.......|.|
T Consensus       190 s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v  223 (230)
T 3n9g_H          190 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  223 (230)
T ss_dssp             EEEEEESTTBTT-BCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECHHHcCC-CeEEEEEEECCCCcceEEEccC
Confidence            478899999999 9999999999987777766654

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.54  E-value=2.3e-14  Score=99.52  Aligned_cols=80  Identities=24%  Similarity=0.423  Sum_probs=58.1

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.+.+.|+|++..+.................|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        18 ~~G~~v~l~C~~~-g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~g~~~~~~~l~V   96 (99)
T 1u2h_A           18 REGQDVIMSIRVQ-GEPKPVVSWLRNRQPVRPDQRRFAEEAEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV   96 (99)
T ss_dssp             ETTCCEEEEEEEE-EESCCEEEEEETTEECCCBTTEEEEECGGGEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEE-EcCCCEEEEEECCEECCCCCCEEEEECCCCEEEEEEccCCcCCCEEEEEEEEECCCceeEEEEEEE
Confidence            3455555555543 455677889999988865543322222222347999999999999999999999999999999987


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        97 ~   97 (99)
T 1u2h_A           97 R   97 (99)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=3e-14  Score=99.05  Aligned_cols=80  Identities=26%  Similarity=0.397  Sum_probs=59.6

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.+.+.|+|+|..+.......+.........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        18 ~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   96 (100)
T 2kdg_A           18 DEGRFCRMDFKVS-GLPAPDVSWYLNGRTVQSDDLHKMIVSEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDV   96 (100)
T ss_dssp             ETTCCEEEEEECE-EESCCEEEEEETTEEECCCSSSCEEEETTTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCEEEEEEEEE-eeCCCEEEEEECCEECcCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4455555555543 456678889999988866544443333333458999999999999999999999999999999987


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      .
T Consensus        97 ~   97 (100)
T 2kdg_A           97 L   97 (100)
T ss_dssp             E
T ss_pred             E
Confidence            3

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.54  E-value=3.2e-14  Score=99.53  Aligned_cols=79  Identities=27%  Similarity=0.410  Sum_probs=59.7

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        21 ~~G~~v~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   98 (103)
T 3qp3_A           21 PCGQNTRFILNVQ-SKPTAEVKWYHNGVELQESSKIHYTNT-SGVLTLEILDCHTDDSGTYRAVCTNYKGEASDYATLDV   98 (103)
T ss_dssp             ETTCCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE-ecCCCEEEEEECCEECCCCCCEEEEEC-CCEEEEEEcCCCcccCEEEEEEEEeCCCcEEEEEEEEE
Confidence            3444555555443 456677889999988876666555432 23467999999999999999999999999999999987


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        99 ~   99 (103)
T 3qp3_A           99 T   99 (103)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.54  E-value=1.2e-13  Score=113.26  Aligned_cols=133  Identities=16%  Similarity=0.279  Sum_probs=90.4

Q ss_pred             eEEEeeCCccCcCCC--CcceEEEccC---CCCCCee--EEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCE
Q psy15667        100 LIAWFKDGRQIPGRT--SSTSLVINPV---GREDRGI--YQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGL  172 (286)
Q Consensus       100 ~~~W~~~g~~l~~~~--~~~~l~i~~v---~~~d~G~--Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~  172 (286)
                      .+.|+|||..+....  ....+.+..+   ..+|+|.  |+|.+.|..|.. ...+.|.|...|.               
T Consensus        37 ~v~W~k~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~-~~~~~l~V~~~p~---------------  100 (265)
T 2oz4_A           37 QVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQ-ETLQTVTIYSFPA---------------  100 (265)
T ss_dssp             EEEEEETTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEE-EEEEEEEEECCCC---------------
T ss_pred             EEEEEeCCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCc-EEEEEEEEeCCCC---------------
Confidence            899999999886421  2335666555   7888885  999999988764 3466777754321               


Q ss_pred             EEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeee
Q psy15667        173 SIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL  252 (286)
Q Consensus       173 ~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~  252 (286)
                                 |.+.            .....+.+|+.+.|.|.+.   |.+.+.|  +|..+...         .....
T Consensus       101 -----------p~~~------------~~~~~v~~G~~v~l~C~~~---p~~~i~W--~g~~~~~~---------~~~~~  143 (265)
T 2oz4_A          101 -----------PNVI------------LTKPEVSEGTEVTVKCEAH---PRAKVTL--NGVPAQPL---------GPRAQ  143 (265)
T ss_dssp             -----------CEEE------------ESCSEEETTCEEEEEEECC---TTSEEEE--SSCSSSCC---------SSEEC
T ss_pred             -----------ceee------------cCCceecCCCcEEEEEEcc---CCCEEEE--CCEEccCC---------CCcEE
Confidence                       0110            0012245678888888765   7788999  77766321         12457


Q ss_pred             EEEcccCCCCCeEEEEEEEecc-ccee---eEEEEEE
Q psy15667        253 LSINSVSAAHSGEYTCVASNTA-AQAR---YSSKLQV  285 (286)
Q Consensus       253 L~i~~v~~~d~G~Y~C~a~N~~-g~~~---~~~~L~V  285 (286)
                      |.|..+..+|+|.|+|.|.|.. |...   .++.|.|
T Consensus       144 l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V  180 (265)
T 2oz4_A          144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV  180 (265)
T ss_dssp             CEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEE
T ss_pred             EEEccccccCCceEEEEEEcCCCCCcccccccEEEEE
Confidence            8899999999999999998655 7665   5566655

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.54  E-value=3e-14  Score=121.57  Aligned_cols=166  Identities=18%  Similarity=0.286  Sum_probs=98.7

Q ss_pred             cccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeC--CccC-------------------cCC--------CCcceEE
Q psy15667         70 VTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKD--GRQI-------------------PGR--------TSSTSLV  120 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~--g~~l-------------------~~~--------~~~~~l~  120 (286)
                      +...++-...|.+....         .+.+.+.|||+  |..+                   ..+        .....|.
T Consensus        12 v~~G~~v~L~C~~~~~~---------~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~   82 (344)
T 1za6_B           12 VKPGASVKISCKASGYT---------FTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVE   82 (344)
T ss_dssp             ECTTCCEEEEEEEESSC---------TTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEE
T ss_pred             EeCCCcEEEEEEcCCcc---------ccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEE
Confidence            34556677888876521         12357999986  4332                   111        1124799


Q ss_pred             EccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccccccc
Q psy15667        121 INPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAF  200 (286)
Q Consensus       121 i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~  200 (286)
                      |.++..+|+|.|+|.+.|..+.. .....|.|...+.                        ..|.+.- .         .
T Consensus        83 I~~v~~~D~G~Y~C~~~n~~~~~-~~~~~l~V~~~~~------------------------~~P~i~~-~---------~  127 (344)
T 1za6_B           83 LSSLRSEDTAVYFCTRSLNMAYW-GQGTLVTVSSAST------------------------KGPSVFP-L---------A  127 (344)
T ss_dssp             ECSCCGGGCEEEEEEETTTTCEE-CCCEEEEECSSCC------------------------BCCEEEE-E---------C
T ss_pred             ECCCCcccCEEEEEEEecCccee-cCcEEEEEecCCC------------------------CCCeEEE-c---------c
Confidence            99999999999999999854322 2345666642110                        0001100 0         0


Q ss_pred             ccCCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCC-CCceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        201 PFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPR-FPVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       201 ~~~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~-~~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +...+.+|+.+.|.|.+....|. +.+.|+|+|..+... .........  .....|.|.++..+| |.|+|.|.|..|.
T Consensus       128 ~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~  206 (344)
T 1za6_B          128 PSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSN  206 (344)
T ss_dssp             CSCTTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEECCCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGT
T ss_pred             ccccccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeECCCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCC
Confidence            11235678888888887654454 789999988754210 000000000  013478999998888 9999999999987


Q ss_pred             eeeE
Q psy15667        277 ARYS  280 (286)
Q Consensus       277 ~~~~  280 (286)
                      ....
T Consensus       207 ~~~~  210 (344)
T 1za6_B          207 TKVD  210 (344)
T ss_dssp             EEEE
T ss_pred             ccce
Confidence            5433

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.54  E-value=2.9e-14  Score=95.91  Aligned_cols=75  Identities=23%  Similarity=0.441  Sum_probs=59.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. + |.|.+.|+|||..+..+.++.+.... ....|.|.++..+|+|.|+|.|.|    .+.++.|.
T Consensus         8 ~~~G~~v~l~C~vs-~-p~p~v~W~k~g~~l~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~a~l~   80 (84)
T 2lu7_A            8 STPGGDLELVVHLS-G-PGGPVRWYKDGERLASQGRVQLEQAG-ARQVLRVQGARSGDAGEYLCDAPQ----DSRIFLVS   80 (84)
T ss_dssp             ECTTSCEEEECCCS-C-CSTTCEEEETTEECCCCSSEEEEECS-SCEEEEESSCSSTTCEEEEEECTT----TCEEEEEE
T ss_pred             EecCCCEEEEEEEC-C-CCcEEEEEECCEEccccccEEEeecC-CeEEEEecCCCCcccEEEEEEECC----EEEEEEEE
Confidence            56788888888873 4 77789999999999888777765543 356899999999999999999865    45667787


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        81 V~   82 (84)
T 2lu7_A           81 VE   82 (84)
T ss_dssp             EC
T ss_pred             EE
Confidence            74

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.54  E-value=3.2e-14  Score=99.08  Aligned_cols=85  Identities=15%  Similarity=0.323  Sum_probs=67.9

Q ss_pred             CCCeeEecccc-ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIE-QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.+ ..+.+|++++|.|.+. .|.|.+.|+|||..|..+.++.+..    .+ ....|.|.+++.+|+|.|+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~i~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~   79 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQEIRPSTKYIFEH----KG-CQRILFINNCQMTDDSEYY   79 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCBCCCBTTEEEEE----ET-TEEEEEEEEECTTTCCEEE
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEECCCCCCEEEEe----cC-CEEEEEEcCCCcCcCEEEE
Confidence            37999988887 5789999999999998 7999999999999998777765431    22 2346999999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.+....+.+
T Consensus        80 C~ag~~~~~~~l   91 (100)
T 2yuv_A           80 VTAGDEKCSTEL   91 (100)
T ss_dssp             EEETTEEEEEEE
T ss_pred             EEECCceEEEEE
Confidence            999554444443

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.53  E-value=4.6e-14  Score=99.99  Aligned_cols=83  Identities=18%  Similarity=0.230  Sum_probs=66.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC----------eeEeceEEecccceeEEEEEcccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN----------RFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~----------~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      ||.|...+.++.+.+|+.++|.|.+.+  .|.+.|+|||++|..+.          ++.+.+     ++..+.|.|.+++
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~-----~g~~~~L~I~~v~   80 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQ-----KGLQHRLILHAVK   80 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECC-----BTTEEEEEEESCC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECCEECccCcccccccccccEEEEEe-----CCcEEEEEECCCC
Confidence            678999999999999999999999997  67899999999998776          776532     2334579999999


Q ss_pred             cCCCeEEEE-EEEcCCEEEEE
Q psy15667         72 VEDGGEYAC-VAENRAGTCEI   91 (286)
Q Consensus        72 ~~D~G~Y~C-~a~n~~g~~~~   91 (286)
                      .+|+|.|+| .+.+....+.+
T Consensus        81 ~~D~G~Y~~~~~~~~~ssA~L  101 (112)
T 2e6q_A           81 HQDSGALVGFSCPGVQDSAAL  101 (112)
T ss_dssp             STTCSEEEEEEETTEEEEEEE
T ss_pred             HHHCccEEEEEECCeeEEEEE
Confidence            999999977 44443333333

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.53  E-value=1.7e-14  Score=103.62  Aligned_cols=83  Identities=29%  Similarity=0.583  Sum_probs=70.1

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .||.|...+.++.+.+|++++|.|.+.|.|.+.+.|++|+..+.. +.++.+.    .++    .|.|.+++.+|+|.|+
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~~~----~~~----~L~i~~v~~~D~G~Y~   78 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIKQL----ENG----VLQIRYAKLGDTGRYT   78 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEEEE----ETT----EEEEESCCGGGCCCEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEEEc----cCC----EEEEccCCcCCCEEEE
Confidence            489999999999999999999999999999999999999998864 4454321    122    4889999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|....
T Consensus        79 C~a~n~~g~~~~   90 (118)
T 2eo9_A           79 CIASTPSGEATW   90 (118)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEEcCCCcEEE
Confidence            999999987653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.53  E-value=6.2e-14  Score=100.07  Aligned_cols=79  Identities=25%  Similarity=0.370  Sum_probs=62.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        19 v~~G~~v~l~C~~~-g~p~p~i~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   96 (114)
T 2cqv_A           19 VRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT   96 (114)
T ss_dssp             EETTCCEEEEEEEE-SSSSCEEEEEESSSBCCCSSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEE
T ss_pred             EeCCCeEEEEEEEE-cCCCCEEEEEECCEECcCCCCEEEEEc-CCEEEEEECCCChhcCEEEEEEEEECCCcEEEEEEEE
Confidence            44566666666654 567788899999998876666655432 3356899999999999999999999999999999888


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        97 V   97 (114)
T 2cqv_A           97 V   97 (114)
T ss_dssp             E
T ss_pred             E
Confidence            7

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.53  E-value=4.8e-14  Score=98.83  Aligned_cols=80  Identities=15%  Similarity=0.287  Sum_probs=63.3

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee--eecC--CCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV--SDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~--~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      ..+..+.|.|.+. |.|.|.+.|+|+|..+........  ....  ...+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~~~~c~v~-G~P~P~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEE-CSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEE-EeCCCEEEEEECCEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            4567788899874 889999999999998876644212  1111  1245699999999999999999999999999999


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|.|.
T Consensus        93 ~l~V~   97 (103)
T 1wwb_X           93 SAHFM   97 (103)
T ss_dssp             EECCS
T ss_pred             EEEEC
Confidence            98763

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.52  E-value=1.3e-14  Score=102.42  Aligned_cols=82  Identities=33%  Similarity=0.572  Sum_probs=61.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.|.|.|.+.|++++..+..+.++...     .++  ..|.|.+++.+|+|.|+|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~-----~~~--~~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETLVEDSGIVLK-----DGN--RNLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBCCCBTTEEEE-----TTT--TEEEECSCCGGGCEEEEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEcccCCCeEEe-----CCC--cEEEEeecCcccCEEEEEE
Confidence            788888888999999999999999999999999999999988765554321     111  2489999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.|..|...
T Consensus        83 a~n~~g~~~   91 (108)
T 3kvq_A           83 ACSVLGCAK   91 (108)
T ss_dssp             EC----CEE
T ss_pred             EEeCCCceE
Confidence            999887654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.52  E-value=9.4e-14  Score=98.17  Aligned_cols=90  Identities=10%  Similarity=0.178  Sum_probs=66.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC---CeeEEeeCCEE-cC--CCCeeEeceEEec-ccceeEEEEEcccccCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT---PDIGWTLDGFE-LP--TNNRFVIGQFVSG-HGDVISHVNISHVTVED   74 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~---p~v~W~~~~~~-l~--~~~~~~~~~~~~~-~~~~~~~l~I~~~~~~D   74 (286)
                      .|.|...+.++++.+|++++|.|.+.|.|.   |.|.|+|++.. +.  ...++.+...... .......|.|.+++.+|
T Consensus         4 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTEEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             ccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            578888898999999999999999999998   99999998732 21  1234433211111 11123469999999999


Q ss_pred             CeEEEEEEEcCCEEEEE
Q psy15667         75 GGEYACVAENRAGTCEI   91 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~~   91 (286)
                      +|.|+|.|.|..|..+.
T Consensus        84 ~G~Y~C~a~N~~G~~~~  100 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCS  100 (108)
T ss_dssp             CEEEEEEEECSSCEEEE
T ss_pred             CEEEEEEEecCCCceEE
Confidence            99999999999987653

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.52  E-value=1.1e-14  Score=104.34  Aligned_cols=87  Identities=15%  Similarity=0.243  Sum_probs=69.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |+.|...+.++++.+|++++|.|.+.|.|.|.+.|+|||..|..+.++.+..    ..+....|.|.+++.+|+|.|+|.
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~l~~~~~~~~~~----~~~~~~~L~I~~v~~~D~G~Y~C~   88 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDKTPLHANELNEIDA----QPGGYHVLTLRQLALKDSGTIYFE   88 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESSCEECCSSSCCBCC----BTTTBCCBEECSCCTTTCEEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECCEECCCCCcEEEEE----cCCCEEEEEEcCCChhhCEEEEEE
Confidence            5578888888999999999999999999999999999999998777664421    111223589999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      +.+....+.+.
T Consensus        89 ~g~~~~~~~L~   99 (115)
T 2cr6_A           89 AGDQRASAALR   99 (115)
T ss_dssp             ETTEECCEEEE
T ss_pred             ECCeeEEEEEE
Confidence            76654444443

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.52  E-value=7.1e-14  Score=110.71  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=68.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+ +..+.+|+++.|.|.+.|. |.|.++|+|||.+|..+.++..       .+....|.|.+++.+|+|.|+|
T Consensus       117 ~P~~~~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~g~~l~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C  188 (207)
T 3rbs_A          117 GPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDEREISVDEKHDF-------KDGICTLLITEFSKKDAGIYEV  188 (207)
T ss_dssp             SSEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETTEEECCCCCCCC-------SSEEEEEEETTCCGGGCEEEEE
T ss_pred             CCceEecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEECCEECCCCCceEc-------CCCEEEEEECCCCcccCEEEEE
Confidence            67777655 5788999999999999999 9999999999999977665422       1122359999999999999999


Q ss_pred             EEEcCCEEEEEe
Q psy15667         81 VAENRAGTCEIT   92 (286)
Q Consensus        81 ~a~n~~g~~~~~   92 (286)
                      .|.|..|.....
T Consensus       189 ~a~N~~G~~~~~  200 (207)
T 3rbs_A          189 ILKDDRGKDKSR  200 (207)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEcCCCEEEEE
Confidence            999999987654

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.51  E-value=2.4e-14  Score=105.72  Aligned_cols=87  Identities=28%  Similarity=0.423  Sum_probs=68.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC----------CeeEeceEEecccceeEEEEEcccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN----------NRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~----------~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      ||.|...+.++++.+|++++|.|.+.|.|.|.+.|++++..+...          .++.+....  .......|.|.+++
T Consensus        21 pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~   98 (137)
T 3qr2_A           21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATY--HQHAASTISIDTLV   98 (137)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEE--SSSEEEEEEECSCC
T ss_pred             CCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEeccc--ccccceEEEECCCC
Confidence            899999999999999999999999999999999999988765321          222221111  11122469999999


Q ss_pred             cCCCeEEEEEEEcCCEEEE
Q psy15667         72 VEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~~~   90 (286)
                      .+|+|.|+|.|.|..|...
T Consensus        99 ~~D~G~Y~C~a~N~~G~~~  117 (137)
T 3qr2_A           99 EEDTGTYECRASNDPDRNH  117 (137)
T ss_dssp             GGGCEEEEEEEECCTTSSS
T ss_pred             cccCEEEEEEEEecCCccc
Confidence            9999999999999877653

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.51  E-value=8e-14  Score=96.65  Aligned_cols=79  Identities=29%  Similarity=0.441  Sum_probs=60.0

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. +.|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        19 ~~G~~~~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V   96 (99)
T 3puc_A           19 SSDSVAKFAVKAT-GEPRPTAIWTKDGKAITQGGKYKLSED-KGGFFLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI   96 (99)
T ss_dssp             ESSSCEEEEEEEE-EESCCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCcEEEEEEEE-ecCCCEEEEEECCEECcCCCCEEEEEe-CCEEEEEECCCCcccCEEEEEEEEeCCCcEeEEEEEEE
Confidence            3455555555543 455678889999988876666655433 23457999999999999999999999999999999987


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        97 ~   97 (99)
T 3puc_A           97 K   97 (99)
T ss_dssp             E
T ss_pred             E
Confidence            4

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.51  E-value=2.2e-14  Score=101.40  Aligned_cols=85  Identities=22%  Similarity=0.457  Sum_probs=69.2

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.+.  |.+.|+|++..+..+.++.+..    .+ ....|.|.+++.+|+|.|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~~~~~~~~~~~~----~~-~~~~L~I~~v~~~D~G~Y~C   79 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPETLRDGGRYSLKQ----DG-TRCELQIHDLSVADAGEYSC   79 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSBCCSSSSCEEEE----ET-TEEEEEESSCCTTTCSEEEE
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEECCCCCCEEEEe----cC-CEEEEEECCCCcccCEEEEE
Confidence            38999988989999999999999999876  6899999999988777775432    22 23469999999999999999


Q ss_pred             EEEcCCEEEEEe
Q psy15667         81 VAENRAGTCEIT   92 (286)
Q Consensus        81 ~a~n~~g~~~~~   92 (286)
                      .|.|....+.+.
T Consensus        80 ~a~n~~~~~~l~   91 (108)
T 2dm7_A           80 MCGQERTSATLT   91 (108)
T ss_dssp             EETTEEEEEECE
T ss_pred             EEcCCEEEEEEE
Confidence            998866555544

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.51  E-value=5.4e-14  Score=96.11  Aligned_cols=74  Identities=19%  Similarity=0.323  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+.  .|.+.+.|+|||+.+..+.++.+...+ ....|.|.++..+|+|.|+|.|.|.    +.++.|+
T Consensus        18 ~~~g~~v~l~C~v~--~p~~~v~W~k~g~~i~~~~~~~i~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~lt   90 (91)
T 2lvc_A           18 AITSECVMLACEVD--REDAPVRWYKDGQEVEESDFVVLENEG-PHRRLVLPATQPSDGGEFQCVAGDE----CAYFTVT   90 (91)
T ss_dssp             CCTTCCEEEEEECS--CTTSCCEEEETTSCCCCCSSCEEEEET-TEEEEEESSCCGGGCSEEEEECSSC----EEEEEEE
T ss_pred             EECCCcEEEEEEEC--CCCcEEEEEECCEEeeeeeeeeEEecC-CeEEEEeCCCChhhcEEEEEEEcce----EEEEEEE
Confidence            45788888888874  367789999999999888777766543 3568999999999999999999775    4556666


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        91 V   91 (91)
T 2lvc_A           91 I   91 (91)
T ss_dssp             C
T ss_pred             C
Confidence            5

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.50  E-value=6.2e-13  Score=124.61  Aligned_cols=221  Identities=16%  Similarity=0.163  Sum_probs=122.7

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE-------
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG-------   87 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g-------   87 (286)
                      ..+.++.|.|.+.|+|.|.+.|.++|..+..-.+..+.  +.........+.+..+...|.|.|.|.......       
T Consensus        89 ~~~g~l~v~c~~~g~P~p~i~W~k~g~~~~~~~~~~~~--i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p  166 (731)
T 2v5y_A           89 SPPGLLNVYVKVNNGPLGNPIWNISGDPTRTWNRAELA--ISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTP  166 (731)
T ss_dssp             SCSEEEEEEEEETTCCCCSEEEEECCCCCSSCEEEEEE--ECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSC
T ss_pred             CCcceEEEEEecCCCCccceeEEEeCCcCCceeEEEEE--EeecCCCceEEEEEEEecCCceEEEEeeEEeeeccccccc
Confidence            44568999999999999999999999776432111100  000000001233444444455544443211000       


Q ss_pred             ----------------EEEEecCCCCCeeEE-Ee--eCCccCcCC--------CCcceEEEccCCCCCCeeEEEEEEcCC
Q psy15667         88 ----------------TCEITPYDSGPYLIA-WF--KDGRQIPGR--------TSSTSLVINPVGREDRGIYQCIARRSD  140 (286)
Q Consensus        88 ----------------~~~~~~~~~~~~~~~-W~--~~g~~l~~~--------~~~~~l~i~~v~~~d~G~Y~C~a~~~~  140 (286)
                                      ...+...+.+++.+. |+  +||+.+...        ...+.|.|.++.++|+|.|+|.|.|..
T Consensus       167 ~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i~~W~~~~~g~~l~~~~~~~~~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~  246 (731)
T 2v5y_A          167 HFLRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAGKYRCMIRTEG  246 (731)
T ss_dssp             EECCCCCEEEETTSCEEEEEEEESCCCTTCEEEEEESSSCCEEEEEEEECCSSEEEEEEEECSCCTTTCEEEEEEEEETT
T ss_pred             ccccccceEEeCCCcEEEEEEeCCCCCCceeEEEecCCCccccccceEEeccccceEEEEEcccccccCeEEEEEEECCC
Confidence                            001111122334555 88  788776321        113689999999999999999999999


Q ss_pred             cceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecC
Q psy15667        141 GDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHG  220 (286)
Q Consensus       141 g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~  220 (286)
                      |...+..+.|.|..+|.....+.........+.|.|......                                    .+
T Consensus       247 G~~~s~~~~l~V~~~P~~~~~p~~~~~~~~~v~l~w~~~~~~------------------------------------g~  290 (731)
T 2v5y_A          247 GVGISNYAELVVKEPPVPIAPPQLASVGATYLWIQLNANSIN------------------------------------GD  290 (731)
T ss_dssp             EEEECCCEEEEEECCCCBSSCCEEEEECSSCEEEECCCSSBS------------------------------------SC
T ss_pred             CCcceeeEEEEEecCCCCCCCcceeccCCceEEEEeCCcccC------------------------------------CC
Confidence            873345677888766654433433333333444444321100                                    00


Q ss_pred             CCC--CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE--ecccceeeE
Q psy15667        221 DPP--LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS--NTAAQARYS  280 (286)
Q Consensus       221 ~p~--~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~--N~~g~~~~~  280 (286)
                      .+.  ..+.|.+.+..     ...+..  .....+.|.++.+.+...|.|.|.  |..|....+
T Consensus       291 ~~i~~Y~v~~~~~~~~-----~~~~~~--~~~~~~~i~~L~p~t~Y~~~V~A~~~N~~G~s~~S  347 (731)
T 2v5y_A          291 GPIVAREVEYCTASGS-----WNDRQP--VDSTSYKIGHLDPDTEYEISVLLTRPGEGGTGSPG  347 (731)
T ss_dssp             SCCCEEEEEEEESSSS-----CEEEEE--CCSSEEEECSCCTTCEEEEEEEEECSSTTCSCCBC
T ss_pred             CccEEEEEEEEECCCC-----ceEEec--cCcceEEEeCCCCCCEEEEEEEEEecCCCccccCC
Confidence            111  13445443211     111111  113578899999999999999999  999876533

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.1e-14  Score=98.10  Aligned_cols=76  Identities=17%  Similarity=0.314  Sum_probs=61.4

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+   .|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|.  ....++.|
T Consensus        18 ~v~~G~~v~l~C~v---~p~p~v~W~k~g~~l~~~~r~~i~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~--~~~~~a~L   91 (100)
T 2yuz_A           18 TVNLGKEICLKCEI---SENIPGKWTKNGLPVQESDRLKVVQK-GRIHKLVIANALTEDEGDYVFAPDAY--NVTLPAKV   91 (100)
T ss_dssp             EEETTSCCCEEEEC---SSCCCEEEEETTEECCCCSSEEEEEC-SSEEEEEESSCCGGGCSEEEEEESSS--CCCEEEEE
T ss_pred             EEcCCCCEEEEEEe---CCCCeEEEEECCEECCCCCcEEEEEe-CCEEEEEECCCChhhCEEEEEEEcCC--CeeEEEEE
Confidence            35678888888877   57788999999999987777766543 23468999999999999999999998  55677777


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        92 ~V   93 (100)
T 2yuz_A           92 HV   93 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.50  E-value=3.7e-14  Score=112.00  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=64.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC----CCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~----~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.|+|++++..+.    .+.++.+    ..++ ....|.|.++..+|+|.
T Consensus       106 p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~r~~~----~~~g-~l~il~i~~v~~~D~G~  180 (203)
T 4fa8_A          106 PLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGVEPAPTAANGGVMK----EKDG-SLSVAVDLSLPKPWHLP  180 (203)
T ss_dssp             EEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEECCC------------CCEE----CTTS-CEEEEEEEEECSSCCCC
T ss_pred             CceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEEECCeeecCcccccceEEE----eCCC-CEEEEEECCCCHHHCEE
Confidence            7888888888999999999999999999999999998776543    2344433    2233 33457788999999999


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|..|+++
T Consensus       181 YtC~A~N~~G~a~  193 (203)
T 4fa8_A          181 VTCVGKNDKEEAH  193 (203)
T ss_dssp             EEEEEESSSCEEE
T ss_pred             EEEEEEcCCCEEE
Confidence            9999999999875

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.50  E-value=2.6e-14  Score=100.10  Aligned_cols=80  Identities=19%  Similarity=0.482  Sum_probs=66.6

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .||.|...+.++.+.+|++++|.|.+.+.|.+ +.|++++..+..+.++.+..    .+ ....|.|.+++.+|+|.|+|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~l~~~~~~~~~~----~~-~~~~L~I~~v~~~D~G~Y~C   80 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNVLRPGDKYSLRQ----EG-AMLELVVRNLRPQDSGRYSC   80 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSBCCCSSSEEEEE----CS-SEEEEEECSCCTTTCCCEEE
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEECCCCCcEEEEE----cC-CEEEEEEccCCcccCEEEEE
Confidence            37889888999999999999999999999999 99999999987777775432    22 23469999999999999999


Q ss_pred             EEEcCC
Q psy15667         81 VAENRA   86 (286)
Q Consensus        81 ~a~n~~   86 (286)
                      .+.+..
T Consensus        81 ~~g~~~   86 (103)
T 2e7b_A           81 SFGDQT   86 (103)
T ss_dssp             ECSSCB
T ss_pred             EECCcE
Confidence            855543

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.50  E-value=1.3e-13  Score=98.15  Aligned_cols=84  Identities=23%  Similarity=0.395  Sum_probs=68.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|.+.+.  |.+.|+||+..|..+.++.+..    ++. ...|.|.+++.+|+|.|+|.
T Consensus        19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~l~~~~~~~~~~----~~~-~~~L~I~~v~~~D~G~Y~C~   91 (113)
T 2edh_A           19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHETLRDGDRHSLRQ----DGA-RCELQIRGLVAEDAGEYLCM   91 (113)
T ss_dssp             CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSBCCCSSSEEEEE----ETT-EEEEEECSCCSTTCEEEEEE
T ss_pred             CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEECCCCCcEEEEE----CCC-EEEEEECCCChhhCEEEEEE
Confidence            6789888999999999999999999775  6899999999998777776532    222 34699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.+....+.+.
T Consensus        92 a~~~~~~~~l~  102 (113)
T 2edh_A           92 CGKERTSAMLT  102 (113)
T ss_dssp             ETTEEEEEEEE
T ss_pred             eCCCCEEEEEE
Confidence            96655555554

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.50  E-value=5.8e-13  Score=105.41  Aligned_cols=35  Identities=17%  Similarity=0.307  Sum_probs=28.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG   40 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~   40 (286)
                      +...+..+++.+|++++|.|.+.+.+ +.+.|+|+.
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~   38 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQN   38 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEEC
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeC
Confidence            44556778899999999999998754 489999853

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.49  E-value=4.3e-14  Score=98.30  Aligned_cols=80  Identities=28%  Similarity=0.502  Sum_probs=58.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....+............|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        20 v~~G~~v~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   98 (100)
T 3caf_A           20 VPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   98 (100)
T ss_dssp             ECTTCCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ecCCCEEEEEEEcc-ccCCCEEEEEECCEEcccccccccEEEecCeEEEEEccCCcCCCEEEEEEEEeCCCEEEEEEEEE
Confidence            45566666666653 55677788999998876543221111111235799999999999999999999999999999988


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        99 V   99 (100)
T 3caf_A           99 V   99 (100)
T ss_dssp             E
T ss_pred             E
Confidence            7

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=1.8e-13  Score=98.27  Aligned_cols=77  Identities=21%  Similarity=0.428  Sum_probs=57.2

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.|.+.|+|+|..+. ..++.+.. ......|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        37 ~~G~~~~l~C~~~-g~P~p~i~W~k~g~~l~-~~~~~~~~-~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V  113 (118)
T 2e7c_A           37 KVGEQLNLVVPFQ-GKPRPQVVWTKGGAPLD-TSRVHVRT-SDFDTVFFVRQAARSDSGEYELSVQIENMKDTATIRIRV  113 (118)
T ss_dssp             ESSSCEEEEEEEE-EESCCEEEEEETTEECC-CSSCEEEE-CSSEEEEEESSCCTTTCEEEEEEEECSSCEECCEEEEEE
T ss_pred             ECCCEEEEEEEEc-cCCCCEEEEEECCEECC-CCcEEEEE-CCCeEEEEECCCChhcCEEEEEEEEeCCCeEEEEEEEEE
Confidence            3455555555443 45667788899998886 33444432 233567999999999999999999999999999999887

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.49  E-value=1.5e-13  Score=94.67  Aligned_cols=76  Identities=22%  Similarity=0.397  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. |.| +.+.|+|+|..+....++.+.     ...|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        20 ~v~~G~~v~l~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l   92 (95)
T 2ckn_A           20 LVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLVESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSV   92 (95)
T ss_dssp             EECTTSCEEEECCEE-SSC-CEEEEEBTTBCCCCCSSEEEC-----SSEEEESSCCGGGSEEEEEEEEETTEEEEEEEEE
T ss_pred             EEcCCCeEEEEEECC-CCC-CceEEEECCEecCCCCCEEEe-----CCEEEECCCChHHCEEEEEEeccCCCcEEEEEEE
Confidence            356788888888775 445 699999999988766554432     4589999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        93 ~V~   95 (95)
T 2ckn_A           93 NVS   95 (95)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            873

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=97.79  Aligned_cols=81  Identities=21%  Similarity=0.350  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|++..+.. ..++.+.........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        27 v~~G~~v~L~C~~~-g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l  105 (116)
T 2kkq_A           27 VLEGDSVKLECQIS-AIPPPKLFWKRNNEMVQFNTDRISLYQDNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRL  105 (116)
T ss_dssp             EETTEEEEEEEEBC-CBSCCEEEEEETTEECCCCBTTEEEEECTTCEEEEEEEEECGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEe-ccCCCEEEEEECCEECcCCCCeEEEEeCCCCeEEEEECCCCcccCEEEEEEEEcCCCeEEEEEEE
Confidence            34555555666543 566778899999988864 3445444333334489999999999999999999999999999998


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus       106 ~V~  108 (116)
T 2kkq_A          106 DVT  108 (116)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            873

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.49  E-value=9.3e-14  Score=100.25  Aligned_cols=89  Identities=12%  Similarity=0.203  Sum_probs=65.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC---CCCeeEEeeCCE-EcC--CCCeeEeceEEecc-cceeEEEEEcccccCCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGF-ELP--TNNRFVIGQFVSGH-GDVISHVNISHVTVEDG   75 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~~~~~-~l~--~~~~~~~~~~~~~~-~~~~~~l~I~~~~~~D~   75 (286)
                      |.|...+.++.+.+|++++|.|.+.|.   |.|.|.|+|+.. .+.  ...++.+....... ......|.|.+++.+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            568888999999999999999999875   899999999742 111  13444332111111 11134699999999999


Q ss_pred             eEEEEEEEcCCEEEEE
Q psy15667         76 GEYACVAENRAGTCEI   91 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~   91 (286)
                      |.|+|+|.|..|..+.
T Consensus        88 G~Y~Cevsn~~g~~~~  103 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSC  103 (126)
T ss_dssp             EEEEEEEECSSCEEEE
T ss_pred             EEEEEEEEeCCCcEEE
Confidence            9999999999876554

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.49  E-value=2.5e-14  Score=103.44  Aligned_cols=88  Identities=28%  Similarity=0.482  Sum_probs=71.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCC-eE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDG-GE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~-G~   77 (286)
                      ||.|.. +..+.+.+|+.+.|.|.+.|.|.|. +.|++++..|..  +.++.+..... .+.....|.|.+++.+|+ |.
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~-~~~~~~~L~I~~v~~~D~~G~   91 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIST-EEGVISTLTISNIVRADFQTI   91 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEE-TTEEEEEEECTTCCHHHHHSC
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecC-CCceEEEEEEcCCChhhCCce
Confidence            788888 8888999999999999999999997 999999998874  35565422111 122234699999999999 99


Q ss_pred             EEEEEEcCCEEEEE
Q psy15667         78 YACVAENRAGTCEI   91 (286)
Q Consensus        78 Y~C~a~n~~g~~~~   91 (286)
                      |+|.|.|..|....
T Consensus        92 Y~C~a~N~~G~~~~  105 (122)
T 2cry_A           92 YNCTAWNSFGSDTE  105 (122)
T ss_dssp             EEEEEECSSCEEEE
T ss_pred             EEEEEECCCCeEEE
Confidence            99999999998764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=2.2e-14  Score=99.10  Aligned_cols=72  Identities=28%  Similarity=0.539  Sum_probs=62.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.+..+.+|++++|.|.+.|.|.|.+.|+||+..+.....              ..|.|.+++.+|+|.|+|.
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~   75 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVPLPLPPS--------------PVLILPEIGPQDQGTYSCV   75 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSBCSSCCC--------------SEEEEESCCTTTCEEEECE
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEECcCCCC--------------CEEEECCCCcccCEEEEEE
Confidence            67888888899999999999999999999999999999988764321              1488999999999999999


Q ss_pred             EEcCCE
Q psy15667         82 AENRAG   87 (286)
Q Consensus        82 a~n~~g   87 (286)
                      |.|..+
T Consensus        76 a~n~~~   81 (96)
T 2ens_A           76 ATHSSH   81 (96)
T ss_dssp             ECCSSC
T ss_pred             EEeCCC
Confidence            999644

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=8.6e-14  Score=98.60  Aligned_cols=81  Identities=27%  Similarity=0.454  Sum_probs=61.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|++..+.. ..++.+.........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        20 v~~G~~v~l~C~~~-g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l   98 (110)
T 2dm2_A           20 IFEGMPVTFTCRVA-GNPKPKIYWFKDGKQISPKSDHYTIQRDLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRL   98 (110)
T ss_dssp             EETTCCEEEEEEBC-CSSCCEEEEECSSCBCCTTCSSEEEEECTTCEEEEEESSCCTTTCSCCEEEEECTTCCEEECCCE
T ss_pred             EeCCCeEEEEEEEE-ecCCCEEEEEECCEECCCCCCeEEEEECCCcEEEEEECCCChhhCEEEEEEEEECCCeEEEEEEE
Confidence            45666666777654 677788999999988865 3444444332334579999999999999999999999999888888


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        99 ~V~  101 (110)
T 2dm2_A           99 MVQ  101 (110)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            773

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.48  E-value=4.3e-14  Score=99.64  Aligned_cols=80  Identities=29%  Similarity=0.543  Sum_probs=64.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        26 v~~G~~v~L~C~~~-g~p~p~v~W~k~g~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~  103 (106)
T 1nct_A           26 VYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTT-KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTLT  103 (106)
T ss_dssp             ESSSSCEECCEEEE-CSSCCBCCBCSSSSCCTTCSSEEEEEC-SSEEEEEECCCCSSCCSEEEECCBCSSCBCCEEEEEE
T ss_pred             EeCCCcEEEEEEEE-EcCCCEEEEEECCEECCCCCCEEEEEC-CCEEEEEECcCCchhCEEEEEEEEeCCCeEEEEEEEE
Confidence            45666666777653 667788899999988876666555442 3357899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus       104 V~  105 (106)
T 1nct_A          104 IQ  105 (106)
T ss_dssp             EC
T ss_pred             EE
Confidence            85

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.48  E-value=1.1e-13  Score=95.10  Aligned_cols=75  Identities=20%  Similarity=0.323  Sum_probs=57.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. + +++.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..    .++.|.
T Consensus        17 v~~G~~v~l~C~v~-~-~~~~v~W~k~g~~i~~~~~~~i~~~-g~~~~L~I~~v~~~D~G~Y~C~a~n~~----~sa~L~   89 (93)
T 1waa_A           17 VFVGETAHFEIELS-E-PDVHGQWKLKGQPLAASPDCEIIED-GKKHILILHNCQLGMTGEVSFQAANTK----SAANLK   89 (93)
T ss_dssp             EETTSCEEEEEEES-S-SSCCCEEEETTEECCCBTTEEEEEE-TTEEEEEECSCCGGGCEEEEEEETTEE----EEEEEE
T ss_pred             EeCCCCEEEEEEEC-C-CCCeEEEEECCEECcCCCCEEEEEE-CCEEEEEECCCChhhCEEEEEEECCCc----EEEEEE
Confidence            55677777777764 3 4477999999999987777666543 234689999999999999999999853    566776


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        90 V~   91 (93)
T 1waa_A           90 VK   91 (93)
T ss_dssp             EE
T ss_pred             EE
Confidence            63

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.48  E-value=4.4e-12  Score=103.64  Aligned_cols=34  Identities=18%  Similarity=0.387  Sum_probs=28.5

Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..|.|.....+| |.|+|.+.|..+.......|.+
T Consensus       216 s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          216 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            478899999999 9999999999987776666554

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=9.3e-14  Score=97.21  Aligned_cols=83  Identities=14%  Similarity=0.300  Sum_probs=67.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.++.+.+|++++|.|. .+.|.+.+.|+||+..|..+.++.+..     .+....|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGLLELRASGKHQPSQ-----EGLTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESSCBCCSSSSEEEEE-----ETTEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCCEECCCCCeEEEEe-----CCCEEEEEECCCCcccCEEEEEE
Confidence            788998999999999999999999 488999999999999998777775531     22234699999999999999998


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      +......+.
T Consensus        82 ~g~~~~~~~   90 (103)
T 2dku_A           82 IGQAQSRAQ   90 (103)
T ss_dssp             CSSCBCCEE
T ss_pred             eCCceEEEE
Confidence            544433333

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=2.2e-13  Score=96.88  Aligned_cols=85  Identities=21%  Similarity=0.369  Sum_probs=66.3

Q ss_pred             CCeeEecccc---ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIE---QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~---~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.+...+.+   +.+.+|+++.|.|.+. .|.+.+.|+|||..+..+.++.+..     .+....|.|.+++.+|+|.|
T Consensus        10 pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~-----~~~~~~L~I~~v~~~D~G~Y   83 (113)
T 2cpc_A           10 VSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDGEEVVESPALLLQK-----EDTVRRLVLPAVQLEDSGEY   83 (113)
T ss_dssp             CSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETTEECCCBTTBEEEE-----CSSEEEEEESSCCTTTCEEE
T ss_pred             CCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECCEECccCCCEEEEE-----CCCEEEEEECCCCcccCEEE
Confidence            5666656655   5788999999999995 8999999999999998766665421     12234699999999999999


Q ss_pred             EEEEEcCCEEEEEe
Q psy15667         79 ACVAENRAGTCEIT   92 (286)
Q Consensus        79 ~C~a~n~~g~~~~~   92 (286)
                      +|.|.|....+.+.
T Consensus        84 ~C~a~n~~~~~~l~   97 (113)
T 2cpc_A           84 LCEIDDESASFTVT   97 (113)
T ss_dssp             EEESSSCEEEEEEE
T ss_pred             EEEEecCcEEEEEE
Confidence            99999966555544

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.48  E-value=7.5e-14  Score=96.92  Aligned_cols=77  Identities=29%  Similarity=0.483  Sum_probs=55.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+...... .   ......|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        23 v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~-~---~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~   97 (99)
T 2yr3_A           23 VIEGQDFVLQCSVR-GTPVPRITWLLNGQPIQYARST-C---EAGVAELHIQDALPEDHGTYTCLAENALGQVSCSAWVT   97 (99)
T ss_dssp             ECTTCCEEEECEEE-EESCCCCEEEESSSBCSSCCCE-E---ETTEEEEEECSCCTTCCBCEEEEEECSSCEEEEECCEE
T ss_pred             EeCCCeEEEEEEEe-eeCCCeEEEEECCEECcccceE-e---eCCeEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEE
Confidence            34455555555442 4456677888888777543321 1   12356899999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        98 V~   99 (99)
T 2yr3_A           98 VH   99 (99)
T ss_dssp             EC
T ss_pred             EC
Confidence            85

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.47  E-value=1.9e-13  Score=97.46  Aligned_cols=91  Identities=15%  Similarity=0.228  Sum_probs=66.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC---CCCeeEEeeCCE-EcCC--CCeeEeceEEecc-cceeEEEEEcccccCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDGF-ELPT--NNRFVIGQFVSGH-GDVISHVNISHVTVED   74 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~~~~~-~l~~--~~~~~~~~~~~~~-~~~~~~l~I~~~~~~D   74 (286)
                      ++.|...+.++++.+|++++|.|.+.|.   |.|.|+|+|+.. .+..  ..++.+....... ......|.|.+++.+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            4568888999999999999999999885   799999999742 2221  2344332111111 1113469999999999


Q ss_pred             CeEEEEEEEcCCEEEEEe
Q psy15667         75 GGEYACVAENRAGTCEIT   92 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~~~   92 (286)
                      +|.|+|+|.|..|..++.
T Consensus        92 ~G~Y~Cevsn~~g~~s~~  109 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCG  109 (118)
T ss_dssp             CSCEEEEEECSSCEEEEE
T ss_pred             CEEEEEEEEEcCCcEEEE
Confidence            999999999999876543

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.47  E-value=2.4e-13  Score=102.48  Aligned_cols=80  Identities=28%  Similarity=0.479  Sum_probs=60.8

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.+.+.|+|++..+....++.+.........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        54 ~~G~~v~L~C~~~-g~P~p~v~W~k~g~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  132 (154)
T 1fhg_A           54 VEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV  132 (154)
T ss_dssp             ETTSCEEEEEEEE-EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eCCCeEEEEEEEE-EecCCEEEEEECCEECCCCCcEEEEECCCCeEEEEECCCChhcCEEEEEEEEECCCeEEEEEEEEE
Confidence            3455555555542 456677889999988876666655443334568999999999999999999999999999999887


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus       133 ~  133 (154)
T 1fhg_A          133 E  133 (154)
T ss_dssp             E
T ss_pred             e
Confidence            3

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.46  E-value=4.5e-13  Score=94.67  Aligned_cols=89  Identities=21%  Similarity=0.369  Sum_probs=66.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEeccc---ceeEEEEEcccccCCC
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHG---DVISHVNISHVTVEDG   75 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~---~~~~~l~I~~~~~~D~   75 (286)
                      .||.|...+.+..+.+|++++|.|.+.+.  |.+.+.|+|++..+...............+   .....|.|.+++.+|+
T Consensus         9 ~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A            9 PXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             CSCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            37899999989999999999999999965  468999999999987543211000000000   0124699999999999


Q ss_pred             eEEEEEEEcCCEEE
Q psy15667         76 GEYACVAENRAGTC   89 (286)
Q Consensus        76 G~Y~C~a~n~~g~~   89 (286)
                      |.|+|.|.|..|..
T Consensus        89 G~Y~C~a~n~~g~~  102 (112)
T 3so5_A           89 GXYQCVISNHFGSS  102 (112)
T ss_dssp             EEEEEEEEETTEEE
T ss_pred             CeEEEEEEeCCCcE
Confidence            99999999998874

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.46  E-value=2.4e-13  Score=95.86  Aligned_cols=77  Identities=27%  Similarity=0.472  Sum_probs=51.4

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.+.+.|+|++..+....+..+..   ....|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        23 ~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V   98 (108)
T 3kvq_A           23 SIGESIEVSCTAS-GNPPPQIMWFKDNETLVEDSGIVLKD---GNRNLTIRRVRKEDEGLYTCQACSVLGCAKVEAFFII   98 (108)
T ss_dssp             ETTCCEEEECBCC-----CCEEEEESSSBCCCBTTEEEET---TTTEEEECSCCGGGCEEEEEEEC----CEEEEEEEEE
T ss_pred             eCCCeEEEEEECc-CcCCCeEEEEECCeEcccCCCeEEeC---CCcEEEEeecCcccCEEEEEEEEeCCCceEEEEEEEE
Confidence            3455555555543 55667788999888776554443322   2467999999999999999999999999999999987


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        99 ~   99 (108)
T 3kvq_A           99 E   99 (108)
T ss_dssp             E
T ss_pred             e
Confidence            3

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=5.2e-14  Score=99.68  Aligned_cols=81  Identities=33%  Similarity=0.544  Sum_probs=61.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+.+.|+|++..+.......+.........|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        21 v~~G~~v~l~C~~~-g~p~p~v~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   99 (110)
T 2dm3_A           21 VQEGKLCRMDCKVS-GLPTPDLSWQLDGKPVRPDSAHKMLVRENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELV   99 (110)
T ss_dssp             EESSSCBCCEEEEE-CSSCCEEECBBSSSBCCCCSSEEEEECTTSCEEEEESSCCGGGCSBBCEEEECSSCEEEECCEEE
T ss_pred             EeCCCEEEEEEEEE-EcCCCEEEEEECCEECCCCCceEEEEecCCeEEEEEeeCCcccCEEEEEEEECCCCEEEEEEEEE
Confidence            34556666666654 56777889999998886655444433333346899999999999999999999999999988888


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus       100 V~  101 (110)
T 2dm3_A          100 VA  101 (110)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.46  E-value=3.1e-12  Score=102.54  Aligned_cols=76  Identities=22%  Similarity=0.457  Sum_probs=43.9

Q ss_pred             CCCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCC---CceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        206 PEGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRF---PVNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~---~~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      .+|+.+.|.|.+....| ++.+.|  ++..+....   ........  .....|.|.....+| |.|+|.+.|..+....
T Consensus       142 ~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~  218 (226)
T 3mlr_H          142 TSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKV  218 (226)
T ss_dssp             TTSSEEEEEEEEEEEBSSCCEEEE--GGGTCCTTEEECCCEECTTSCEEEEEEEEEEGGGTTT-CCCEEEEEEGGGTEEE
T ss_pred             cCCCCEEEEEEEEEEECCCeEEEE--CCccccCCeEeCCcEECCCCCEEEEEEEEECHhHcCC-CeEEEEEEECCCCcCe
Confidence            35666666666554444 456777  333221110   00000000  013468899999999 9999999999987766


Q ss_pred             EEEEE
Q psy15667        280 SSKLQ  284 (286)
Q Consensus       280 ~~~L~  284 (286)
                      ...|.
T Consensus       219 ~~~~~  223 (226)
T 3mlr_H          219 DKKVE  223 (226)
T ss_dssp             EEECC
T ss_pred             EEEcc
Confidence            65554

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.46  E-value=3.2e-13  Score=93.53  Aligned_cols=76  Identities=26%  Similarity=0.502  Sum_probs=59.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+..+.|.+.+.|+|++.......  .+.    ..+.|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        22 v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~--~~~----~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~   95 (98)
T 1gl4_B           22 VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSR--AMD----FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLH   95 (98)
T ss_dssp             ECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTT--EEE----ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCce--eec----CCCEEEEeCCChhhCEEEEEEecCCCCccccEEEEE
Confidence            56777777777776567888999999765433221  111    135799999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        96 V~   97 (98)
T 1gl4_B           96 VQ   97 (98)
T ss_dssp             EC
T ss_pred             Ee
Confidence            85

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=5.3e-13  Score=92.69  Aligned_cols=77  Identities=22%  Similarity=0.387  Sum_probs=62.9

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+.+|+.+.|.|.+. +.| +.+.|+|++..+....++.+.     ...|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        13 ~~v~~G~~v~L~C~~~-g~p-p~i~W~k~g~~~~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~   85 (99)
T 2cr3_A           13 FLVHPGDLLQLRCRLR-DDV-QSINWLRDGVQLAESNRTRIT-----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFS   85 (99)
T ss_dssp             CCBCTTSCEEEECCCC-SSC-CEEEEEESSSBCCCCSSEEEC-----SSEEEETTCCTTTCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEeCCCcEEEEEEec-CCC-CeEEEEECCEECCCCCcEEEE-----CCEEEEccCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            3467899999999875 455 699999999988665554432     358999999999999999999999999988888


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.|.
T Consensus        86 l~V~   89 (99)
T 2cr3_A           86 VNVS   89 (99)
T ss_dssp             ECBC
T ss_pred             EEEe
Confidence            8763

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.44  E-value=3.3e-13  Score=93.75  Aligned_cols=73  Identities=29%  Similarity=0.560  Sum_probs=61.4

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .+.++++.+|++++|.|.+.|.| |.+.|+|++..+....++.+.      +.   .|.|.+++.+|+|.|+|.|.|..|
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~~~~~~~~~~~~------~~---~L~i~~v~~~D~G~Y~C~a~n~~g   78 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGVQLAESNRTRIT------GE---EVEVQDSVPADSGLYACVTSSPSG   78 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSSBCCCCSSEEEC------SS---EEEETTCCTTTCEEEEEEEEETTE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCEECCCCCcEEEE------CC---EEEEccCCHHHCEEEEEEEEeCCc
Confidence            45567899999999999999987 799999999988776666432      21   489999999999999999999988


Q ss_pred             EEE
Q psy15667         88 TCE   90 (286)
Q Consensus        88 ~~~   90 (286)
                      ...
T Consensus        79 ~~~   81 (99)
T 2cr3_A           79 SDT   81 (99)
T ss_dssp             EEE
T ss_pred             eEE
Confidence            754

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.44  E-value=2.5e-13  Score=94.42  Aligned_cols=77  Identities=30%  Similarity=0.559  Sum_probs=59.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|++..+... .++.+.    ..+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        20 v~~G~~~~l~C~~~-g~p~p~v~W~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l   94 (100)
T 2edj_A           20 LAVDGTALLKCKAT-GDPLPVISWLKEGFTFPGRDPRATIQ----EQGTLQIKNLRISDTGTYTCVATSSSGETSWSAVL   94 (100)
T ss_dssp             EESSSEEEECCEEE-CSSCCEEEEEESSSEESSSCSSCEEC----TTCCEEEESCCTTTCCEEEEEEECSSCCCBCCEEE
T ss_pred             EcCCCcEEEEEEEE-EcCCCEEEEEECCEECCCCCCCEEEc----CCCEEEEccCCcccCEEEEEEEEcCCCCEEEEEEE
Confidence            45677777777664 6777889999998877532 233221    23579999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        95 ~V~   97 (100)
T 2edj_A           95 DVT   97 (100)
T ss_dssp             EEE
T ss_pred             EEe
Confidence            873

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.43  E-value=1.1e-11  Score=111.53  Aligned_cols=91  Identities=14%  Similarity=0.170  Sum_probs=60.2

Q ss_pred             eEEEeeCCccCcCC--------CC------cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEE------cCCCcee
Q psy15667        100 LIAWFKDGRQIPGR--------TS------STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL------GGLPYVR  159 (286)
Q Consensus       100 ~~~W~~~g~~l~~~--------~~------~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v------~~~~~~~  159 (286)
                      .|+|+|||..+...        ..      .+.|.|..+..+|.|.|+|.|.|..+...  ...+..      ...|.+.
T Consensus       330 ~i~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~--~~~~~~~~~~~~~~~p~v~  407 (512)
T 1zvo_C          330 HLTWEVAGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ--RLMALREPAAQAPVKLSLN  407 (512)
T ss_pred             EEEEEECCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC--ceeEEeecCCCCCCCCEEE
Confidence            78999999876511        01      13588999999999999999999876432  112211      1234433


Q ss_pred             cCCceEEecCCCEE-EEeeEeeecCC--eEEEEEcCCc
Q psy15667        160 LIPKVTAIDGEGLS-IKCPVAGYPIE--EVHWEKVPPK  194 (286)
Q Consensus       160 ~~~~~~~~~g~~~~-l~c~~~~~p~~--~v~w~~~~~~  194 (286)
                      ..+...  .|+.+. |.|.+.|.+++  .+.|.+.+..
T Consensus       408 ~~~~~~--~~~~~~~L~C~~~g~~P~~i~v~W~k~g~~  443 (512)
T 1zvo_C          408 LLASSD--PPEAASWLLCEVSGFSPPNILLMWLEDQRE  443 (512)
T ss_pred             EEccCc--CCCCceEEEEEEeeeCCCCcEEEEEECCeE
Confidence            322211  688899 99999996544  5889996544

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=3.9e-13  Score=95.88  Aligned_cols=81  Identities=19%  Similarity=0.236  Sum_probs=52.1

Q ss_pred             CCCCeEEEEEeeec--CCCCCeEEEEeCCee-CCC--CCCceeeec-CC----CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        206 PEGARTRVICGVTH--GDPPLTIRWLKDGKP-LSP--RFPVNVSDL-DS----FSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       206 ~~g~~~~l~c~~~~--~~p~~~~~W~~~g~~-~~~--~~~~~~~~~-~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .+|+.+.|.|.+..  +.|.|.|.|+|++.. +..  ..++.+... ..    ....|.|.++..+|+|.|+|+|.|..|
T Consensus        25 ~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~Cevsn~~g  104 (118)
T 2edn_A           25 ETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGDRGYYRLEVKAKDT  104 (118)
T ss_dssp             ETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTTCSCEEEEEECSSC
T ss_pred             eCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhhCEEEEEEEEEcCC
Confidence            34444444444432  135677778876421 111  122333211 11    246899999999999999999999999


Q ss_pred             ceeeEEEEEEC
Q psy15667        276 QARYSSKLQVK  286 (286)
Q Consensus       276 ~~~~~~~L~V~  286 (286)
                      ..++++.|.|+
T Consensus       105 ~~s~~~~L~V~  115 (118)
T 2edn_A          105 CDSCGFNIDVE  115 (118)
T ss_dssp             EEEEEECCEEE
T ss_pred             cEEEEEEEEEE
Confidence            99999999884

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.43  E-value=6.4e-13  Score=91.45  Aligned_cols=74  Identities=24%  Similarity=0.444  Sum_probs=61.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +  .|.+.|+|+|..+....+..+.     ...|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        13 v~~G~~~~l~C~~~-~--~p~v~W~k~g~~~~~~~~~~~~-----~~~L~i~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~   84 (95)
T 4hwu_A           13 VAPGESLELQCMLK-D--AAVISWTKDGVHLGPNNRTVLI-----GEYLQIKGATPRDSGLYACTAARTVDSETWIFMVN   84 (95)
T ss_dssp             ECTTSCEEEECCCC-T--TCEEEEEETTEEECCCSSEEEE-----TTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             ECCCCEEEEEEEeC-C--CCEEEEEECCEECCCCceEEEe-----CCEEEECcCCcccCEEEEEEEccCCCcEEEEEEEE
Confidence            56788888888765 3  5799999999988766554432     34799999999999999999999999999999988


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus        85 V~   86 (95)
T 4hwu_A           85 VT   86 (95)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=1.7e-13  Score=95.66  Aligned_cols=75  Identities=19%  Similarity=0.459  Sum_probs=59.9

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +..+.+|++++|.|.+. .|.+.+.|+|||..+..+.++.+..    .+ ....|.|.+++.+|+|.|+|.|.|....+.
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~g~~~~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~C~a~~~~~~~~   93 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKDGKKLSSSSKVRVEA----VG-CTRRLVVQQAGQAEAGEYSCEAGGQQLSFR   93 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEETTEECCCCSSEEEEE----ET-TEEEEEETTCCTTTCSCEEEEETTEECCEE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEECCEECCCCCCEEEEE----cC-CEEEEEECCCCcccCEEEEEEcCCCcEEEE
Confidence            44789999999999998 8999999999999998777765431    12 234699999999999999999987654444


Q ss_pred             E
Q psy15667         91 I   91 (286)
Q Consensus        91 ~   91 (286)
                      +
T Consensus        94 l   94 (102)
T 2eo1_A           94 L   94 (102)
T ss_dssp             E
T ss_pred             E
Confidence            3

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.42  E-value=7.6e-13  Score=91.60  Aligned_cols=79  Identities=24%  Similarity=0.376  Sum_probs=60.3

Q ss_pred             CCeeEecc-ccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSF-IEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~-~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.... ..+.+.+|++++|.|.+. +.|.+.+.|+|++........+.      ..+    .|.|.+++.+|+|.|+
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~------~~~----~L~i~~v~~~D~G~Y~   78 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNG----ILTIRNVQPSDAGTYV   78 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE------ETT----EEEECSCCGGGCEEEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCCceeec------CCC----EEEEeCCChhhCEEEE
Confidence            44555444 556899999999999998 68999999999865443332221      112    4899999999999999


Q ss_pred             EEEEcCCEEEE
Q psy15667         80 CVAENRAGTCE   90 (286)
Q Consensus        80 C~a~n~~g~~~   90 (286)
                      |.|.|..|...
T Consensus        79 C~a~n~~g~~~   89 (98)
T 1gl4_B           79 CTGSNMFAMDQ   89 (98)
T ss_dssp             EEEECSSCEEE
T ss_pred             EEecCCCCccc
Confidence            99999988754

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=2.2e-12  Score=92.54  Aligned_cols=87  Identities=22%  Similarity=0.342  Sum_probs=62.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|... .+..+  .+...|.|.+.|+|.|.+.|+|||..+..+.++....... .......|.|.++..+|+|.|+|.
T Consensus         8 pP~i~~~-~~~~~--~~~~~l~C~~~g~P~p~i~W~k~g~~l~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~   83 (118)
T 1wwc_A            8 PPRVVSL-EEPEL--RLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQE-GEISEGCLLFNKPTHYNNGNYTLI   83 (118)
T ss_dssp             CCCCCCC-CCCCC--CCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEEC-SSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCceecc-CCCee--ccceEEEEEeeeeCCCeEEEEECCEECCCCCceeEEEecc-CccccEEEEECCCChhcCEEEEEE
Confidence            5665543 22222  3667899999999999999999999998766554321110 001123599999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|....+
T Consensus        84 a~N~~G~~~~~   94 (118)
T 1wwc_A           84 AKNPLGTANQT   94 (118)
T ss_dssp             EEETTEEEEEE
T ss_pred             EECCCCeEeeE
Confidence            99999986543

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.41  E-value=1.4e-12  Score=93.98  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=52.3

Q ss_pred             CCCCeEEEEEeeec--CCCCCeEEEEeCCeeC---CCCCCceeeec--C---CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        206 PEGARTRVICGVTH--GDPPLTIRWLKDGKPL---SPRFPVNVSDL--D---SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       206 ~~g~~~~l~c~~~~--~~p~~~~~W~~~g~~~---~~~~~~~~~~~--~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .+|+.+.|.|.+..  +.|.|.|.|+|++...   ....++.+...  .   .....|.|.++..+|+|.|+|+|.|..|
T Consensus        20 ~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DaG~Y~Cevsn~~g   99 (126)
T 2dav_A           20 KVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGNYRCEVTYKDK   99 (126)
T ss_dssp             ETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEEEEEEEECSSC
T ss_pred             eCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccCEEEEEEEEeCCC
Confidence            34444444444431  2366778888864211   01223333211  0   0246899999999999999999999999


Q ss_pred             ceeeEEEEEEC
Q psy15667        276 QARYSSKLQVK  286 (286)
Q Consensus       276 ~~~~~~~L~V~  286 (286)
                      ...+++.|.|.
T Consensus       100 ~~~~~~~L~V~  110 (126)
T 2dav_A          100 FDSCSFDLEVH  110 (126)
T ss_dssp             EEEECCEEEEE
T ss_pred             cEEEEEEEEEE
Confidence            99999999873

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.41  E-value=9.7e-12  Score=95.91  Aligned_cols=67  Identities=18%  Similarity=0.273  Sum_probs=44.2

Q ss_pred             CCCCCeEEEEEeeecCCCCC--eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +.+|+.+.|.|.+..+.|.+  .|+|+|+++.+....    ......+.+|.+.....+|...|+|.|.|.++
T Consensus        98 ~~~G~~~tL~C~v~g~~P~~~l~i~w~kg~~~l~~~~----~~~~~~~~tl~~~~~reD~g~~~sC~A~~~l~  166 (185)
T 1iam_A           98 QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREP----AVGEPAEVTTTVLVRRDHHGAQFSCRTELDLR  166 (185)
T ss_dssp             ECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEE----CCTTTEEEEEEEECCSSCSSCEEEEEEEEECG
T ss_pred             ccCCCcEEEEEEcCCccCCCCcEEEEEeCCEEccccc----CCCccccEEEEEeceeccCCCeEEEEEEecCc
Confidence            55777788888777666764  589999999874321    01112234666654444444499999999887

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.40  E-value=2.2e-12  Score=101.80  Aligned_cols=85  Identities=24%  Similarity=0.383  Sum_probs=68.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      +.+...+....+.+|+.+.|.|.+.|.|.|.+.|++|+..+..+.++.+..    ..+....|.|.++..+|+|.|+|.|
T Consensus       118 ~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~----~~~~~~~L~i~~~~~~d~G~Y~C~a  193 (212)
T 2r15_A          118 RVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLKNEKALAQTDHCNLKF----EAGRTAYFTINGVSTADSGKYGLVV  193 (212)
T ss_dssp             EEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEE----ETTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             cccccCCCcEEEccCCeEEEEEEEcCCCCceEEEEECCeECccCCCEEEEE----cCCCEEEEEEcCcchHHCeEEEEEE
Confidence            344444555689999999999999999999999999999998777765422    1122346999999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|....
T Consensus       194 ~N~~g~~~~  202 (212)
T 2r15_A          194 KNKYGSETS  202 (212)
T ss_dssp             EETTEEEEE
T ss_pred             EcCCCcEEE
Confidence            999987643

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.39  E-value=6.3e-13  Score=95.35  Aligned_cols=76  Identities=29%  Similarity=0.511  Sum_probs=59.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+... .++.+..    .+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        20 v~~G~~v~l~C~~~-g~p~p~i~W~k~g~~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~~~l   94 (118)
T 2eo9_A           20 VAVDGTFVLSCVAT-GSPVPTILWRKDGVLVSTQDSRIKQLE----NGVLQIRYAKLGDTGRYTCIASTPSGEATWSAYI   94 (118)
T ss_dssp             EETTCEEEEECBCC-CSSCCEEEEEESSSBCCTTSTTEEEEE----TTEEEEESCCGGGCCCEEEEEECSSCEEEEECCE
T ss_pred             EcCCCeEEEEEEEE-ecCCCEEEEEECCEECcCCCCeEEEcc----CCEEEEccCCcCCCEEEEEEEEcCCCcEEEEEEE
Confidence            45677777777663 6778889999999888543 3333322    3479999999999999999999999999888888


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        95 ~V   96 (118)
T 2eo9_A           95 EV   96 (118)
T ss_dssp             EE
T ss_pred             EE
Confidence            77

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.39  E-value=3.7e-12  Score=88.48  Aligned_cols=76  Identities=25%  Similarity=0.504  Sum_probs=62.3

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+.  .|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|    |....++.|
T Consensus        19 ~v~~G~~v~l~C~~~--~p~~~v~W~k~g~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a----g~~~~~~~l   91 (100)
T 2yuv_A           19 QVDKGGRVRFVVELA--DPKLEVKWYKNGQEIRPSTKYIFEHK-GCQRILFINNCQMTDDSEYYVTA----GDEKCSTEL   91 (100)
T ss_dssp             EECTTEEEEEEEEES--CTTSCEEEEESSCBCCCBTTEEEEEE-TTEEEEEEEEECTTTCCEEEEEE----TTEEEEEEE
T ss_pred             EEcCCCcEEEEEEec--CCCceEEEEECCEECCCCCCEEEEec-CCEEEEEEcCCCcCcCEEEEEEE----CCceEEEEE
Confidence            367899999999886  58889999999999877666665543 23457999999999999999999    777888888


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        92 ~V~   94 (100)
T 2yuv_A           92 FVR   94 (100)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            874

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.39  E-value=2.3e-12  Score=92.42  Aligned_cols=76  Identities=25%  Similarity=0.384  Sum_probs=60.2

Q ss_pred             CeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC---CCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        209 ARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD---SFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       209 ~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~---~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ....|.|.+. |.|.|.+.|+|+|..+....+..+....   ...+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        21 ~~~~l~C~~~-g~P~p~i~W~k~g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           21 LEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CEEEEEEEEE-CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cceEEEEEee-eeCCCeEEEEECCEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            4567778775 6888999999999998766544433211   12568999999999999999999999999999988765

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.39  E-value=1.5e-12  Score=101.20  Aligned_cols=85  Identities=31%  Similarity=0.491  Sum_probs=70.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++.+..    .+. ...|.|.++..+|+|.|+|.
T Consensus       103 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~----~~~-~~~L~i~~~~~~d~G~Y~C~  177 (194)
T 2a38_A          103 PPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFYRDGAEIQSSLDFQISQ----EGD-LYSLLIAEAYPEDSGTYSVN  177 (194)
T ss_dssp             EEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----ETT-EEEEEEEEECGGGCEEEEEE
T ss_pred             CCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEEECCEECCCCCcEEEEE----cCC-EEEEEECCCChhcCeEEEEE
Confidence            5677777778889999999999999999999999999999998777665421    222 23589999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus       178 a~n~~g~~~~  187 (194)
T 2a38_A          178 ATNSVGRATS  187 (194)
T ss_dssp             EEETTEEEEE
T ss_pred             EEeCCCceEE
Confidence            9999987643

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.39  E-value=1.9e-12  Score=88.32  Aligned_cols=70  Identities=23%  Similarity=0.420  Sum_probs=54.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L  283 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....          ...|.|.++..+|+|.|+|.|.|..|... ..+.|
T Consensus        15 v~~G~~~~l~C~~~-g~p~p~i~W~~~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l   83 (91)
T 3bfo_A           15 LMPGSTLVLQCVAV-GSPIPHYQWFKNELPLTHET----------KKLYMVPYVDLEHQGTYWCHVYNDRDSQDSKKVEI   83 (91)
T ss_dssp             ECTTSCEEEECEEE-CSSCCEEEEEETTEECTTCC----------SSEEEESSCCGGGCEEEEEEEECSSCEEECCCEEE
T ss_pred             ecCCCcEEEEEEec-cCCCCEEEEEcCCeeCCcCC----------CCeEEECCCCHHhCEEEEEEEEcCCCCEEeeeEEE
Confidence            55677777777654 67778999999998775432          34799999999999999999999999754 45667


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        84 ~V   85 (91)
T 3bfo_A           84 II   85 (91)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.38  E-value=1.7e-12  Score=91.56  Aligned_cols=37  Identities=24%  Similarity=0.286  Sum_probs=34.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...|.|.++..+|+|.|+|.|.|..|...+++.|.|.
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           71 LFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             eEEEEEecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            4689999999999999999999999999999999883

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.38  E-value=9.5e-13  Score=94.03  Aligned_cols=75  Identities=20%  Similarity=0.309  Sum_probs=53.7

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. +.|.|.+.|+|+|..+....++.+.........|.|.++..+|+|.|+|.    +|....++.|.|
T Consensus        26 ~~G~~v~l~C~~~-g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~L~V  100 (115)
T 2cr6_A           26 QEGSSATFRCRIS-PANYEPVHWFLDKTPLHANELNEIDAQPGGYHVLTLRQLALKDSGTIYFE----AGDQRASAALRV  100 (115)
T ss_dssp             ETTSCEECCCEEE-STTCCSCEEEESSCEECCSSSCCBCCBTTTBCCBEECSCCTTTCEEEEEE----ETTEECCEEEEE
T ss_pred             eCCCcEEEEEEEc-CCCCCccEEEECCEECCCCCcEEEEEcCCCEEEEEEcCCChhhCEEEEEE----ECCeeEEEEEEE
Confidence            3455555555544 56667888999998887666555442223356799999999999999999    466677777776

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.38  E-value=1.2e-12  Score=89.98  Aligned_cols=72  Identities=32%  Similarity=0.543  Sum_probs=59.5

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .+.+..+.+|++++|.|.+.+  .|.+.|++||..+..+.++.+.      +.   .|.|.+++.+|+|.|+|.|.|..|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~g~~~~~~~~~~~~------~~---~L~i~~~~~~D~G~Y~C~a~n~~g   75 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKDGVHLGPNNRTVLI------GE---YLQIKGATPRDSGLYACTAARTVD   75 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEETTEEECCCSSEEEE------TT---EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEECCEECCCCceEEEe------CC---EEEECcCCcccCEEEEEEEccCCC
Confidence            456678999999999999987  4799999999999877666431      11   488999999999999999999988


Q ss_pred             EEE
Q psy15667         88 TCE   90 (286)
Q Consensus        88 ~~~   90 (286)
                      ...
T Consensus        76 ~~~   78 (95)
T 4hwu_A           76 SET   78 (95)
T ss_dssp             EEE
T ss_pred             cEE
Confidence            654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.38  E-value=5.5e-12  Score=100.84  Aligned_cols=148  Identities=15%  Similarity=0.178  Sum_probs=90.7

Q ss_pred             eeEe-cccc-ccccCCCcEEEEEEeecCCCC---eeEEeeCCEEc----CCC-------------CeeEeceEEecccce
Q psy15667          4 ILTY-SFIE-QTLQPGPAVSLKCIASGNPTP---DIGWTLDGFEL----PTN-------------NRFVIGQFVSGHGDV   61 (286)
Q Consensus         4 ~~~~-~~~~-~~~~~G~~~~l~C~~~g~p~p---~v~W~~~~~~l----~~~-------------~~~~~~~~~~~~~~~   61 (286)
                      .|.+ .|.+ +++.+|++++|.|.+.+.|.+   .|.|+|++...    ..+             .|...  ........
T Consensus         4 Qf~V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~--~~~~~~~~   81 (226)
T 4f80_A            4 QFSVLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSI--LRDGITAG   81 (226)
T ss_dssp             CCEEECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEE--ECTTGGGT
T ss_pred             eEEEECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEE--ecccccCC
Confidence            3444 3333 578999999999999887665   69999876321    001             11110  00000111


Q ss_pred             eEEEEEcccccCCCeEEEEEEEcCCEEEEEe-----------------------------cCC-CCCeeEEEeeCC-ccC
Q psy15667         62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT-----------------------------PYD-SGPYLIAWFKDG-RQI  110 (286)
Q Consensus        62 ~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~-----------------------------~~~-~~~~~~~W~~~g-~~l  110 (286)
                      ...|.|.+++.+|+|.|+|.|.|..|.....                             ..+ .+++.+.|+|++ ..+
T Consensus        82 ~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~~  161 (226)
T 4f80_A           82 KAALRIHNVTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI  161 (226)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCBC
T ss_pred             eEEEEEeeCchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEEECCceEc
Confidence            2469999999999999999999988864321                             011 245789999964 444


Q ss_pred             cCC------CCc---ceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcC
Q psy15667        111 PGR------TSS---TSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGG  154 (286)
Q Consensus       111 ~~~------~~~---~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~  154 (286)
                      ...      ...   ..+.+.++..+|+|.|+|.|.|..|.. ...+.|.|..
T Consensus       162 ~~~~~~~~~~~~g~~~v~s~l~v~~~d~G~YtC~a~N~~g~~-~~~~~v~v~e  213 (226)
T 4f80_A          162 PTVEAPVVADGVGLYAVAASVIMRGSSGEGVSCTIRSSLLGL-EKTASISIAD  213 (226)
T ss_dssp             CCEECCCEECTTSCEEEEEEEEECC----CEEEEEEETTTTE-EEEEEECCCT
T ss_pred             CCCceEEEECCCCcEEEEEEEEechhcCcEEEEEEEeCCCCe-EEEEEEEECC
Confidence            321      111   223455678899999999999999875 3456666643

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.38  E-value=1.9e-12  Score=89.14  Aligned_cols=75  Identities=17%  Similarity=0.336  Sum_probs=59.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+  +.|.+.+.|+|+|..+....++.+.... ....|.|.++..+|+|.|+|.|    |....++.|.
T Consensus        20 v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a----g~~~~~~~l~   92 (95)
T 2k1m_A           20 VAAGSPAVFEAET--ERAGVKVRWQRGGSDISASNKYGLATEG-TRHTLTVREVGPADQGSYAVIA----GSSKVKFDLK   92 (95)
T ss_dssp             EETTSCEEEEEEC--SSSSCCCEEECSSSEECSSTTCEEEEET-TEEEEEESSCCTTCCSEEEEEE----TTEEEEEEEE
T ss_pred             EeCCCcEEEEEEe--CCCCCeEEEEECCEECCCCCcEEEEEcC-CEEEEEEcCCCcccCEEEEEEE----CCceEEEEEE
Confidence            5577788888876  5677889999999988766666654432 3467999999999999999999    6677788888


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        93 V~   94 (95)
T 2k1m_A           93 VI   94 (95)
T ss_dssp             EE
T ss_pred             Ee
Confidence            74

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.37  E-value=1.7e-12  Score=91.28  Aligned_cols=83  Identities=18%  Similarity=0.211  Sum_probs=62.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCE-EcC-------CCCeeEeceEEecccceeEEEEEcccccC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF-ELP-------TNNRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~-~l~-------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      +|.|...+.++++.+|++++|.|.+.+.|.+.+.|++++. .+.       .+.|+.+...    ......|.|.+++.+
T Consensus         6 ~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~----~~~~~~L~I~~v~~~   81 (108)
T 3m45_A            6 SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRA----SWHELSISVSDVSLS   81 (108)
T ss_dssp             --CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEE----SSSEEEEEECSCCGG
T ss_pred             CCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeec----CCCcEEEEECCCChh
Confidence            5778888999999999999999999999999999999775 221       2335443211    112346999999999


Q ss_pred             CCeEEEEEEEcCCEEE
Q psy15667         74 DGGEYACVAENRAGTC   89 (286)
Q Consensus        74 D~G~Y~C~a~n~~g~~   89 (286)
                      |+|.|+|.|.| .+..
T Consensus        82 D~G~Y~C~~~n-~~~~   96 (108)
T 3m45_A           82 DEGQYTCSLFT-MPVK   96 (108)
T ss_dssp             GCEEEEEEECS-SSCE
T ss_pred             HCeEEEEEEEc-CCCc
Confidence            99999999999 5543

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.37  E-value=9.1e-13  Score=92.39  Aligned_cols=76  Identities=16%  Similarity=0.257  Sum_probs=55.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+...++++.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|    ...++.|.
T Consensus        20 v~~G~~v~l~C~v~~~~~~~~v~W~k~g~~i~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~a~L~   94 (104)
T 2eny_A           20 VLEGESCSFECVLSHESASDPAMWTVGGKTVGSSSRFQATRQ-GRKYILVVREAAPSDAGEVVFSVRG----LTSKASLI   94 (104)
T ss_dssp             EESSCCEEEEEECSSCCCSSCBCCBSSSSBCSBCSSCEEEEE-TTEEEEEECSCCTTTCSCEEEEETT----EEEEECEE
T ss_pred             EcCCCcEEEEEEEcCCCCCceeEEEECCEECCCCCCEEEEEc-CCEEEEEECCCCHHHCEEEEEEECC----eeEEEEEE
Confidence            445666666666543333457899999999877766665543 2356899999999999999999865    45667777


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        95 V   95 (104)
T 2eny_A           95 V   95 (104)
T ss_dssp             E
T ss_pred             E
Confidence            6

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.36  E-value=1.2e-13  Score=99.73  Aligned_cols=82  Identities=21%  Similarity=0.320  Sum_probs=60.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCe-EEEEeCCeeCCC--CCCceeeec---CCCeeeEEEcccCCCCC-eEEEEEEEecccc
Q psy15667        204 GLPEGARTRVICGVTHGDPPLT-IRWLKDGKPLSP--RFPVNVSDL---DSFSSLLSINSVSAAHS-GEYTCVASNTAAQ  276 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~-~~W~~~g~~~~~--~~~~~~~~~---~~~~~~L~i~~v~~~d~-G~Y~C~a~N~~g~  276 (286)
                      .+.+|+.+.|.|.+. |.|.|. +.|+|++..+..  ..++.+...   ......|.|.++..+|. |.|+|.|.|.+|.
T Consensus        24 ~~~~G~~v~l~C~~~-g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y~C~a~N~~G~  102 (122)
T 2cry_A           24 HALHGEKGQIKCFIR-STPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS  102 (122)
T ss_dssp             CCCTTSCCCCCEEEC-CSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE
T ss_pred             EEecCCCEEEEEEEe-ecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceEEEEEECCCCe
Confidence            356677777777765 566665 899999887764  234443211   11145899999999999 9999999999999


Q ss_pred             eeeEEEEEEC
Q psy15667        277 ARYSSKLQVK  286 (286)
Q Consensus       277 ~~~~~~L~V~  286 (286)
                      ....+.|.|+
T Consensus       103 ~~~~~~l~V~  112 (122)
T 2cry_A          103 DTEIIRLKEQ  112 (122)
T ss_dssp             EEEEECCCCS
T ss_pred             EEEEEEEEEC
Confidence            9988888764

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.36  E-value=4.9e-12  Score=118.54  Aligned_cols=158  Identities=16%  Similarity=0.192  Sum_probs=92.4

Q ss_pred             CEEEEEe--cCCCCCeeEEEeeCCccCcCCCCcceEEEccC-CCCCCeeEEEEEEcCCcceeeeeeEEEEc---CCCcee
Q psy15667         86 AGTCEIT--PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPV-GREDRGIYQCIARRSDGDVAQGSAELQLG---GLPYVR  159 (286)
Q Consensus        86 ~g~~~~~--~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v-~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~---~~~~~~  159 (286)
                      .|...+.  ..+.+.+.+.|.|+|..+.. .....+.|..+ .....+.|.|.+.+..|........+...   ..|.+.
T Consensus        91 ~g~l~v~c~~~g~P~p~i~W~k~g~~~~~-~~~~~~~i~~~~~~~~~l~~~~va~~~~G~~~~~~v~~~~~~~~~~p~~~  169 (731)
T 2v5y_A           91 PGLLNVYVKVNNGPLGNPIWNISGDPTRT-WNRAELAISTFWPNFYQVIFEVITSGHQGYLAIDEVKVLGHPCTRTPHFL  169 (731)
T ss_dssp             SEEEEEEEEETTCCCCSEEEEECCCCCSS-CEEEEEEECCCTTSCEEEEEEEEECSSCCEEEECCBEEESSCCSSSCEEC
T ss_pred             cceEEEEEecCCCCccceeEEEeCCcCCc-eeEEEEEEeecCCCceEEEEEEEecCCceEEEEeeEEeeecccccccccc
Confidence            4544433  33445578999999987632 22345666655 33345889998888877654322222221   223332


Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEE-EE--eCCeeCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIR-WL--KDGKPLS  236 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~-W~--~~g~~~~  236 (286)
                      ......+..|+++.|.|.+.|.|                                        .|.+. |+  ++|..+.
T Consensus       170 ~~~~~~v~~G~~v~l~C~~~g~P----------------------------------------~p~i~~W~~~~~g~~l~  209 (731)
T 2v5y_A          170 RIQNVEVNAGQFATFQCSAIGRT----------------------------------------VAGDRLWLQGIDVRDAP  209 (731)
T ss_dssp             CCCCEEEETTSCEEEEEEEESCC----------------------------------------CTTCEEEEEESSSCCEE
T ss_pred             cccceEEeCCCcEEEEEEeCCCC----------------------------------------CCceeEEEecCCCcccc
Confidence            23344455555555555555544                                        44444 55  5555442


Q ss_pred             CCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEE
Q psy15667        237 PRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQV  285 (286)
Q Consensus       237 ~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V  285 (286)
                      ......+ ......+.|.|.++..+|+|.|+|.|.|..|. .+..+.|.|
T Consensus       210 ~~~~~~~-~~~~~~~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V  258 (731)
T 2v5y_A          210 LKEIKVT-SSRRFIASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVV  258 (731)
T ss_dssp             EEEEEEC-CSSEEEEEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ccceEEe-ccccceEEEEEcccccccCeEEEEEEECCCCCcceeeEEEEE
Confidence            2110000 01112468999999999999999999999997 677777766

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.36  E-value=8.8e-12  Score=89.80  Aligned_cols=36  Identities=33%  Similarity=0.493  Sum_probs=33.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        73 ~~~L~I~~v~~~DsG~Y~C~a~n~~g~~~~~~~l~V  108 (122)
T 3s35_X           73 LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRV  108 (122)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECCCCcccCEEEEEEEccCCCceEEEEEEEE
Confidence            457999999999999999999999999999999887

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.36  E-value=3e-12  Score=89.48  Aligned_cols=75  Identities=23%  Similarity=0.415  Sum_probs=58.3

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC--CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      .+.+|+.+.|.|.+. + |.+.+.|+|+|..+....  ++.+... .....|.|.++..+|+|.|+|.|.|    ...++
T Consensus        18 ~v~~G~~v~l~C~~~-~-~~~~v~W~k~g~~l~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n----~~~~~   90 (103)
T 1x44_A           18 TAYCGERVELECEVS-E-DDANVKWFKNGEEIIPGPKSRYRIRVE-GKKHILIIEGATKADAAEYSVMTTG----GQSSA   90 (103)
T ss_dssp             EEETTEEEEEEEECS-S-SSCCCEEEETTEECCCSTTCSEEEEEE-TTEEEEEEEEECTTTCSEEEEEETT----EEEEE
T ss_pred             EEECCCCEEEEEEec-C-CCCeEEEEECCEECCCCCceEEEEEEc-CCEEEEEECCCCcccCEEEEEEECC----CcEEE
Confidence            366888889999874 4 668999999999987765  4455432 2356899999999999999999998    45666


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        91 ~l~V   94 (103)
T 1x44_A           91 KLSV   94 (103)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6665

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.35  E-value=4.3e-12  Score=89.57  Aligned_cols=82  Identities=23%  Similarity=0.477  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEEeeecC-CCCCeEEEEeCCeeCCCCCCceeeecCC-------CeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHG-DPPLTIRWLKDGKPLSPRFPVNVSDLDS-------FSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~-~p~~~~~W~~~g~~~~~~~~~~~~~~~~-------~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.+|+.+.|.|.+... .+.+.+.|+|++..+.............       ....|.|.++..+|+|.|+|.|.|..|.
T Consensus        22 v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~  101 (112)
T 3so5_A           22 AIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGS  101 (112)
T ss_dssp             ECTTCCEEEEEEEEESCCCCCEEEEEETTEECTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGCEEEEEEEEETTEE
T ss_pred             EECCCCEEEEEEEecCCCCCEEEEEccCCcccccccccceeeeeccCCCccccceEEEEeccccccCCeEEEEEEeCCCc
Confidence            4455666666655432 4568899999998876432111111100       1368999999999999999999999998


Q ss_pred             -eeeEEEEEEC
Q psy15667        277 -ARYSSKLQVK  286 (286)
Q Consensus       277 -~~~~~~L~V~  286 (286)
                       .+..+.|.|.
T Consensus       102 ~~s~~~~l~V~  112 (112)
T 3so5_A          102 SYSVXAXLTIN  112 (112)
T ss_dssp             EECCCEEEEEC
T ss_pred             EEEeEEEEEeC
Confidence             5688888873

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.35  E-value=5.9e-12  Score=99.65  Aligned_cols=83  Identities=30%  Similarity=0.498  Sum_probs=66.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC---CeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN---NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~---~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      |.|...+....+.+|+++.|.|.+.|.|.|.+.|++||..+...   .++...   .  ......|.|.+++.+|+|.|+
T Consensus       109 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~---~--~~~~~~L~i~~~~~~d~G~Y~  183 (212)
T 2yd6_A          109 PTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQL---R--SESIGALQIEQSEESDQGKYE  183 (212)
T ss_dssp             CEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEEC------CCEEEE---E--ETTEEEEEECSCCGGGCEEEE
T ss_pred             ceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEECCccccCcCCCceEEEE---e--cCCeEEEEEcCCCcccCEEEE
Confidence            67777777788999999999999999999999999999998653   333221   1  111246999999999999999


Q ss_pred             EEEEcCCEEEE
Q psy15667         80 CVAENRAGTCE   90 (286)
Q Consensus        80 C~a~n~~g~~~   90 (286)
                      |.|.|..|...
T Consensus       184 C~a~N~~G~~~  194 (212)
T 2yd6_A          184 CVATNSAGTRY  194 (212)
T ss_dssp             EEEEETTEEEE
T ss_pred             EEEECCCCccc
Confidence            99999999865

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.34  E-value=4.1e-12  Score=100.79  Aligned_cols=60  Identities=20%  Similarity=0.271  Sum_probs=43.7

Q ss_pred             CeeEEEeeCCccCcCC----------------CCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCce
Q psy15667         98 PYLIAWFKDGRQIPGR----------------TSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYV  158 (286)
Q Consensus        98 ~~~~~W~~~g~~l~~~----------------~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~  158 (286)
                      ++.+.|+++|..+...                .....|.|.++..+|+|.|+|.|.|..|.. ...+.|.|..+|.+
T Consensus       136 ~~~i~W~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~-~~~~~l~V~~~p~i  211 (213)
T 2x1w_L          136 GIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK-KNSTFVRVHEDPIE  211 (213)
T ss_dssp             CCEEEEECSCSSCCSEEEEEEEECCCSSCSCEEEEEEEEESSCCGGGCEEEEEEEECSSCEE-EEEEEEEEEC----
T ss_pred             ceEEEEEecCCccceEEEeccccccccCccceeeeEEEEECCCCcccCEEEEEEEecCCCcE-EEEEEEEEeccccc
Confidence            3579999998864210                012359999999999999999999999876 55788888776654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.34  E-value=1.1e-11  Score=96.15  Aligned_cols=85  Identities=27%  Similarity=0.490  Sum_probs=68.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee--CCEEcC---CCCeeEeceEEecccceeEEEEEcccc-cCCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL--DGFELP---TNNRFVIGQFVSGHGDVISHVNISHVT-VEDG   75 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~--~~~~l~---~~~~~~~~~~~~~~~~~~~~l~I~~~~-~~D~   75 (286)
                      ||.|...+....+.+|+.+.|.|.+.|.|.|.+.|++  ++..+.   .+.++.+.     ..+....|.|.++. .+|+
T Consensus        92 ~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~~~~~~~~~~~~-----~~~~~~~L~i~~~~~~~d~  166 (190)
T 2wv3_A           92 APDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISNSSGRFFII-----NKENYTELNIVNLQITEDP  166 (190)
T ss_dssp             CCEEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEECCCTTSCEEEE-----ECSSEEEEEECSCCTTTSC
T ss_pred             CCcccccCCcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceeeeecCCCeEEEe-----cCCCeeEEEEEeccccCCC
Confidence            6888888888899999999999999999999999999  787764   34555432     11222369999999 6999


Q ss_pred             eEEEEEEEcCCEEEEE
Q psy15667         76 GEYACVAENRAGTCEI   91 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~   91 (286)
                      |.|+|.|.|..|....
T Consensus       167 G~Y~C~a~N~~g~~~~  182 (190)
T 2wv3_A          167 GEYECNATNSIGSASV  182 (190)
T ss_dssp             EEEEEEEECSSCEEEE
T ss_pred             EEEEEEEEecCCccee
Confidence            9999999999987643

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.32  E-value=2.7e-12  Score=92.53  Aligned_cols=84  Identities=24%  Similarity=0.282  Sum_probs=57.7

Q ss_pred             eEeccccc-cccCCCcEEEEEEeec--CCCCeeEEeeCCEEcC-----CCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          5 LTYSFIEQ-TLQPGPAVSLKCIASG--NPTPDIGWTLDGFELP-----TNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         5 ~~~~~~~~-~~~~G~~~~l~C~~~g--~p~p~v~W~~~~~~l~-----~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      +.+.+.+. .+.+|++++|.|.+.|  .|.+.+.|++++..+.     ...+....  ..........|.|.+++.+|+|
T Consensus        10 v~i~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~L~I~~v~~~DsG   87 (122)
T 3s35_X           10 VVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQS--GSEMKKFLSTLTIDGVTRSDQG   87 (122)
T ss_dssp             EEEESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCCEEE--ETTEEEEEEEEEESSCCGGGCE
T ss_pred             EEEcCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeecccccc--CCceeeEEEEEEECCCCcccCE
Confidence            34455554 8899999999999999  4557899999987542     11111000  0000011235999999999999


Q ss_pred             EEEEEEEcCCEEEE
Q psy15667         77 EYACVAENRAGTCE   90 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~   90 (286)
                      .|+|.|.|..|...
T Consensus        88 ~Y~C~a~n~~g~~~  101 (122)
T 3s35_X           88 LYTCAASSGLMTKK  101 (122)
T ss_dssp             EEEEEEECSSCEEE
T ss_pred             EEEEEEccCCCceE
Confidence            99999999988654

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.32  E-value=7e-11  Score=94.87  Aligned_cols=35  Identities=20%  Similarity=0.353  Sum_probs=28.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC--CCeeEEeeC
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD   39 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~   39 (286)
                      +...+..+++.+|++++|.|.+.+.+  .+.+.|++.
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq   40 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRK   40 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEE
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEE
Confidence            44556777899999999999998654  467999975

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.31  E-value=4.4e-12  Score=88.55  Aligned_cols=76  Identities=24%  Similarity=0.428  Sum_probs=58.1

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. + |.+.+.|+|+|..+....++.+.... ....|.|.++..+|+|.|+|.|.|    ...++.|
T Consensus        19 ~v~~G~~v~l~C~~~-~-~~~~v~W~k~g~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l   91 (103)
T 2edf_A           19 WVAPGEDVELRCELS-R-AGTPVHWLKDRKAIRKSQKYDVVCEG-TMAMLVIRGASLKDAGEYTCEVEA----SKSTASL   91 (103)
T ss_dssp             EECTTSCEEECCEES-S-SSCCCCEEESSCBCCCSSSEEEEEET-TEEEEEESSCCTTTCSEEEEECSS----CEEEEEE
T ss_pred             EEcCCCCEEEEEEEe-C-CCCcEEEEECCEEccCCCCEEEEECC-CEEEEEECCCCcccCEEEEEEEcc----CCcEEEE
Confidence            356777788888775 3 66789999999988776666655432 255799999999999999999999    3566667


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus        92 ~V~   94 (103)
T 2edf_A           92 HVE   94 (103)
T ss_dssp             EEC
T ss_pred             EEe
Confidence            663

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.31  E-value=2.4e-12  Score=90.50  Aligned_cols=76  Identities=22%  Similarity=0.395  Sum_probs=54.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+ +.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|.  ....++.|.
T Consensus        20 v~~G~~v~l~C~~~-~~~~~-v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~--~~~~~~~l~   94 (106)
T 2dlt_A           20 VKAAEQAVFKCEVS-DEKVT-GKWYKNGVEVRPSKRITISHV-GRFHKLVIDDVRPEDEGDYTFVPDGY--ALSLSAKLN   94 (106)
T ss_dssp             EESSCCEECCCEES-CSSCE-EEEEESSCBCCCCSSCEEEEE-TTEEEEEESSCCTTTCSCEEEEEETS--CCCCCBCEE
T ss_pred             EeCCCeEEEEEEEc-CCCcc-eEEEcCCEECcCCCCEEEEEe-CCEEEEEECCCCcCCCEEEEEEEccC--CceEEEEEE
Confidence            44566666666654 44555 999999998877666665543 23468999999999999999999998  334455555


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        95 V   95 (106)
T 2dlt_A           95 F   95 (106)
T ss_dssp             E
T ss_pred             E
Confidence            4

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.30  E-value=6.2e-12  Score=98.16  Aligned_cols=81  Identities=32%  Similarity=0.542  Sum_probs=66.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|...+.+..+.+|++++|.|.+.|.|.|.+.|++++..+..+.++..      .+.   .|.|.++..+|+|.|+|.
T Consensus       113 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~------~~~---~L~i~~v~~~d~G~Y~C~  183 (201)
T 3s97_C          113 PADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKVLEPMPSTAEIST------SGA---VLKIFNIQLEDEGIYECE  183 (201)
T ss_dssp             EEEEEEECCCEEEETTCCEEEEEEEEEESCCEEEEEETTBCCCTTCEEET------TTT---EEEECSCCGGGCEEEEEE
T ss_pred             CCceEecCCceEEecCCcEEEEEEccCCCCCceEEEeCCCcCCCceeecC------CCC---EEEEccCChhhCEEEEEE
Confidence            46677777788899999999999999999999999999998875544321      122   488999999999999999


Q ss_pred             EEcCCEEEEE
Q psy15667         82 AENRAGTCEI   91 (286)
Q Consensus        82 a~n~~g~~~~   91 (286)
                      |.|..|....
T Consensus       184 a~n~~g~~~~  193 (201)
T 3s97_C          184 AENIRGKDKH  193 (201)
T ss_dssp             EEETTEEEEE
T ss_pred             EEecCCceee
Confidence            9999987643

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.30  E-value=3.7e-12  Score=98.09  Aligned_cols=121  Identities=13%  Similarity=0.211  Sum_probs=88.9

Q ss_pred             ccccCCCcEEEEEEeec--CCCCeeEEeeCCEEcC----------CCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667         12 QTLQPGPAVSLKCIASG--NPTPDIGWTLDGFELP----------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g--~p~p~v~W~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +.+.+|++++|.|...+  .|.+.|.|+|++..|.          .+.|+.+    ..++    +|.|.+++.+|+|.|+
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~----~~~g----sL~I~~v~~~D~G~Y~   77 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI----LANG----DLKIKNLTRDDSGTYN   77 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE----CTTS----CEEESSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE----CCCC----cEEEcccccccCEEEE
Confidence            46789999999995433  6678999999997542          2344432    1122    3899999999999999


Q ss_pred             EEEEcCCEEE--E----Ee----------------------cCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCee
Q psy15667         80 CVAENRAGTC--E----IT----------------------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGI  131 (286)
Q Consensus        80 C~a~n~~g~~--~----~~----------------------~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~  131 (286)
                      |.|.|..|..  .    +.                      ..+.+++.+.|+|||+.+....   .+.|..+..+|+|.
T Consensus        78 C~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~~~~~v~L~C~~~g~p~p~i~W~~~g~~l~~~~---~~~i~~~~~~d~G~  154 (176)
T 1hng_A           78 VTVYSTNGTRILNKALDLRILEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSLR---QKTMSYQWTNLRAP  154 (176)
T ss_dssp             EEEEETTCCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEES---SSEEEEECSCCSSC
T ss_pred             EEEEeCCCCEEEEEEEEEEEeCCCCCCEEEecCCcEEEEEEecCCCCcEEEEEECCEECCCCC---cEEEEEEEccCCeE
Confidence            9999877653  1    11                      1123457899999999875322   25666888999999


Q ss_pred             EEEEEEcCCcce
Q psy15667        132 YQCIARRSDGDV  143 (286)
Q Consensus       132 Y~C~a~~~~g~~  143 (286)
                      |+|.|.|..|..
T Consensus       155 Y~C~a~N~~g~~  166 (176)
T 1hng_A          155 FKCKAVNRVSQE  166 (176)
T ss_dssp             EEEEEEETTEEE
T ss_pred             EEEEEEecCCCc
Confidence            999999998865

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.30  E-value=8e-12  Score=87.52  Aligned_cols=74  Identities=23%  Similarity=0.459  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+  +.|.+.+.|+|+|..+... .++.+... .....|.|.++..+|+|.|+|.|.|    ...++.|
T Consensus        28 v~~G~~v~L~C~~--~~p~~~v~W~k~g~~l~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~~----~~~~~~l  100 (104)
T 1pd6_A           28 VSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVGG----EKCSTEL  100 (104)
T ss_dssp             EETTSCEEEEEEC--SSSSSCCEEEESSSEECCCSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEETT----EEECCEE
T ss_pred             EecCCCEEEEEEE--cCCCCEEEEEECCEECCCCCCeEEEEec-CCEEEEEECCCCcccCEEEEEEECC----CcEEEEE
Confidence            5678888888877  4677889999999988766 55555432 2245899999999999999999954    4455666


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus       101 ~V  102 (104)
T 1pd6_A          101 FV  102 (104)
T ss_dssp             EE
T ss_pred             EE
Confidence            66

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.29  E-value=5.3e-11  Score=83.49  Aligned_cols=93  Identities=20%  Similarity=0.339  Sum_probs=63.1

Q ss_pred             cCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        160 LIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       160 ~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      ....+.+.+|++++|.|.+.+.|.+.+.|.+...                               .+.|..++... ...
T Consensus        12 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~-------------------------------~~~~~~~~~~~-~~~   59 (108)
T 3m45_A           12 LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQ-------------------------------QTLYFDDKKAL-RDN   59 (108)
T ss_dssp             ECCCEEEETTSCEEEEEEESSCSSCCEEEECTTC-------------------------------CEEEETTEECS-CCT
T ss_pred             cCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCC-------------------------------ceEEEcCCccc-ccC
Confidence            3445677788888888888877777777765221                               02233332222 222


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ++.+.........|.|.++..+|+|.|+|.|.| .|....++.|.|
T Consensus        60 r~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~n-~~~~~~~~~L~V  104 (108)
T 3m45_A           60 RIELVRASWHELSISVSDVSLSDEGQYTCSLFT-MPVKTSKAYLTV  104 (108)
T ss_dssp             TEEEEEESSSEEEEEECSCCGGGCEEEEEEECS-SSCEEEEEEEEE
T ss_pred             cEEEeecCCCcEEEEECCCChhHCeEEEEEEEc-CCCcEEEEEEEE
Confidence            343332223466899999999999999999999 898899988887

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.29  E-value=1.1e-11  Score=97.93  Aligned_cols=79  Identities=34%  Similarity=0.619  Sum_probs=67.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.|...+....+.+|+.++|.|.+.|.|.|.+.|++++..+.. ..++.+      ..+   .|.|.++..+|+|.|+|.
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~------~~~---~L~i~~v~~~d~G~Y~C~  181 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYSL------KDG---FLQIENSREEDQGKYECV  181 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEEE------ETT---EEEECSCCGGGCEEEEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEEc------cCC---eEEEccCChhhCEEEEEE
Confidence            7888888888899999999999999999999999999999875 344422      112   488999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.|..|...
T Consensus       182 a~N~~G~~~  190 (212)
T 2yd1_A          182 AENSMGTEH  190 (212)
T ss_dssp             EEETTEEEE
T ss_pred             eecCCCcee
Confidence            999998764

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.29  E-value=1.4e-11  Score=100.29  Aligned_cols=121  Identities=17%  Similarity=0.109  Sum_probs=50.2

Q ss_pred             CCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceec-CCceEEecCCCEEEEeeEeeec-----CCeEEEEEcCCcccc
Q psy15667        124 VGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRL-IPKVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIES  197 (286)
Q Consensus       124 v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~-~~~~~~~~g~~~~l~c~~~~~p-----~~~v~w~~~~~~~~~  197 (286)
                      +.++|+|.|+|.|.   |... ....+.+...+.+.. ...+.+.+|++++|.|.+.+.|     .+.+.|.+....   
T Consensus        11 v~~~dsg~Y~C~a~---g~~~-~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g---   83 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS---GYSF-TNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPG---   83 (254)
T ss_dssp             -------------------------------CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTT---
T ss_pred             ecCCccEEEEEcCc---hhhh-hhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCC---
Confidence            68899999999998   3322 122232222333332 3345666777777777777665     255666542100   


Q ss_pred             cccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        198 FAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       198 ~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                                             .+...+. +...... ....++.+.. ......|.|.+++.+|+|.|+|.|.|..+.
T Consensus        84 -----------------------~~~~~~~-~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~  138 (254)
T 2c1o_A           84 -----------------------QSPKRLI-YLVSKLDSGDPDRFTGSG-SGTDFTLKISRVEAEDLGIYYCVQGSHFPP  138 (254)
T ss_dssp             -----------------------SCCEEEE-ETTTEECTTCCTTEEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSC
T ss_pred             -----------------------CCceEEE-EeccccCCCccceEEEec-CCCEEEEEECcCCcccCEEEEEEEEcCcce
Confidence                                   0000000 0000000 0112333322 223458999999999999999999998653

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.29  E-value=4.4e-10  Score=90.16  Aligned_cols=156  Identities=16%  Similarity=0.240  Sum_probs=97.5

Q ss_pred             cccCCCeEEEEEEEcCCEEEEEecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeE
Q psy15667         70 VTVEDGGEYACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAE  149 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~~g~~~~~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~  149 (286)
                      +...|.-..+|.+....      | ...+..++|+|||.++..  ....|.|......|+|.|+|.+.+..|-.. .+..
T Consensus        14 i~~GdsVTLTatVaGGk------P-~pspyTYqWyKDG~~IsG--aT~tLti~s~t~sdSG~YqCvVTDa~Gcs~-tSs~   83 (304)
T 3shs_A           14 FLAGDGFTLTATVAGDE------P-LPSNLTYTWTKDDQPHEN--NTATLTVADATSENAGSYKVTVQDTDTMTS-VESE   83 (304)
T ss_dssp             BCTTCCEEEEEEEEESS------S-CCCCEEEEEEETTEECSC--CSSEEEESSCCGGGCEEEEEEEEETTTCCE-EECC
T ss_pred             ccCCCCEEEEEEecCCC------C-CCCCceEEEEECCccccC--CcceEEeeeccccCCeEEEEEEEECCCCee-eeee
Confidence            45566667888765531      0 011468999999988765  335799999999999999999999876432 2223


Q ss_pred             EEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEee--ecCCC-----
Q psy15667        150 LQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV--THGDP-----  222 (286)
Q Consensus       150 l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~--~~~~p-----  222 (286)
                      +.|...+.                +.+.... |. .                 ..+..|..+.|.+.+  +.|.|     
T Consensus        84 VtVT~~a~----------------l~i~it~-P~-s-----------------~~vssg~sVtL~aTVt~SGGtppA~~~  128 (304)
T 3shs_A           84 VFLMEEAE----------------LIVNITE-PQ-H-----------------FYVSSQTDVELHATVKFSGGKTPADNY  128 (304)
T ss_dssp             CEEECBCC----------------EEEEESS-CS-E-----------------EEECSSCCEEEEEEEEETTSCCSSTTC
T ss_pred             EEEeccCc----------------eeEEecC-CC-c-----------------eeccCCCeEEEEEEEeccCCCCcccCC
Confidence            33221110                0111100 10 0                 002234555666655  55555     


Q ss_pred             CCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        223 PLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       223 ~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+++|+|++..+..            ...|.+......++|.|+|.+.|..+..-.++.
T Consensus       129 ~yTYQWyKngt~Isg------------Aq~lT~sS~TateaG~YtV~VTn~~~~c~~s~~  176 (304)
T 3shs_A          129 ELHYSWSKGEDVIDT------------TQDITIQEFTADKNGVYTVKVWGESEDSAASAS  176 (304)
T ss_dssp             CCEEEEEETTEEEES------------SSEEEECSCCGGGCEEEEEEEESSSGGGCEEEE
T ss_pred             CceeEEeeCCeEccC------------ccccceeeEEecCCeEEEEEEEcCCCCcccccc
Confidence            479999999986532            125678888899999999999999774444433

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.28  E-value=7.3e-12  Score=107.61  Aligned_cols=35  Identities=11%  Similarity=0.132  Sum_probs=30.0

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL   43 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l   43 (286)
                      .+.++++.+|++++|.|.+.| |.|.+.|++++..+
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~  286 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQ  286 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCB
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCee
Confidence            345668999999999999999 99999999987654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.28  E-value=1.1e-11  Score=96.66  Aligned_cols=77  Identities=25%  Similarity=0.310  Sum_probs=63.3

Q ss_pred             ccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcc-cccCCCeEEEEEEEcCCEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH-VTVEDGGEYACVAENRAGT   88 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~-~~~~D~G~Y~C~a~n~~g~   88 (286)
                      ....+.+|+.+.|.|.+.|.|.|.+.|++++..+..+.++.+..    .+ ....|.|.+ +..+|+|.|+|.|.|..|.
T Consensus       112 ~~~~~~~g~~~~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~~~----~~-~~~~L~i~~~~~~~d~G~Y~C~a~N~~g~  186 (197)
T 2j8h_A          112 GAVHALRGEVVSIKIPFSGKPDPVITWQKGQDLIDNNGHYQVIV----TR-SFTSLVFPNGVERKDAGFYVVCAKNRFGI  186 (197)
T ss_dssp             EEEEEETTCCCEEEEEEEEESCCEEEEEESSCEECSSSSCEEEE----CS-SEEEEECTTCCCGGGCEEEEEEEEETTEE
T ss_pred             CeEEEeCCCEEEEEEEEEecCCCcEEEEECCEEeecCCCEEEEE----cC-CceEEEEeCCCCcccCEeEEEEEEeCCCc
Confidence            44568899999999999999999999999999998777765421    11 123689999 9999999999999999987


Q ss_pred             EEE
Q psy15667         89 CEI   91 (286)
Q Consensus        89 ~~~   91 (286)
                      .+.
T Consensus       187 ~~~  189 (197)
T 2j8h_A          187 DQK  189 (197)
T ss_dssp             EEE
T ss_pred             EeE
Confidence            643

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.28  E-value=1.9e-11  Score=94.52  Aligned_cols=74  Identities=31%  Similarity=0.689  Sum_probs=61.8

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +..+.+|+.+.|.|.+.|.|.|.+.|+++|..+..+.++...    ...   ..|.|.++..+|+|.|+|.|.|..|...
T Consensus       107 ~~~~~~g~~v~l~C~~~g~p~~~v~W~~~g~~~~~~~~~~~~----~~~---~~L~i~~~~~~d~G~Y~C~a~n~~g~~~  179 (189)
T 2v5t_A          107 NATAERGEEMTFSCRASGSPEPAISWFRNGKLIEENEKYILK----GSN---TELTVRNIINSDGGPYVCRATNKAGEDE  179 (189)
T ss_dssp             EEETTSCCCEEEECEEEEESCCEEEEEETTEECCCSSSEEEE----TTT---TEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cccccCCCcEEEEEEEccCCCCeEEEEECCEECcCCCcEEEe----cCC---CEEEEcCCChhhCeeEEEEEEeCCCcee
Confidence            457889999999999999999999999999999877665431    112   2488999999999999999999998765


Q ss_pred             E
Q psy15667         91 I   91 (286)
Q Consensus        91 ~   91 (286)
                      .
T Consensus       180 ~  180 (189)
T 2v5t_A          180 K  180 (189)
T ss_dssp             E
T ss_pred             E
Confidence            3

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.28  E-value=1.2e-11  Score=87.73  Aligned_cols=74  Identities=23%  Similarity=0.350  Sum_probs=56.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+.  .|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|    ...++.|.
T Consensus        25 ~~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n----~~~~~~l~   97 (113)
T 2cpc_A           25 AVRLERVVLTCELC--RPWAEVRWTKDGEEVVESPALLLQKE-DTVRRLVLPAVQLEDSGEYLCEIDD----ESASFTVT   97 (113)
T ss_dssp             EETTCCEEEEEEES--CTTCCCEEEETTEECCCBTTBEEEEC-SSEEEEEESSCCTTTCEEEEEESSS----CEEEEEEE
T ss_pred             EEcCCeEEEEEEec--CCCCeEEEEECCEECccCCCEEEEEC-CCEEEEEECCCCcccCEEEEEEEec----CcEEEEEE
Confidence            44677788888763  67788999999999877666655443 2346899999999999999999999    44566666


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        98 V   98 (113)
T 2cpc_A           98 V   98 (113)
T ss_dssp             E
T ss_pred             E
Confidence            5

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.27  E-value=2.8e-12  Score=88.37  Aligned_cols=71  Identities=25%  Similarity=0.585  Sum_probs=54.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc--eeeEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ--ARYSS  281 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~--~~~~~  281 (286)
                      .+.+|+.+.|.|.+. +.|.+.+.|+|++..+....          ...|.|.++..+|+|.|+|.|.|..|.  .+..+
T Consensus        21 ~v~~G~~v~l~C~~~-g~p~~~v~W~k~~~~~~~~~----------~~~L~i~~v~~~d~G~Y~C~a~n~~~~~~~s~~~   89 (96)
T 2ens_A           21 AVAPGGTVTLTCEVP-AQPSPQIHWMKDGVPLPLPP----------SPVLILPEIGPQDQGTYSCVATHSSHGPQESRAV   89 (96)
T ss_dssp             EECTTCEEEEECCCS-SCSSCCCCCEESSSBCSSCC----------CSEEEEESCCTTTCEEEECEECCSSCCCEECCCE
T ss_pred             EEcCCCeEEEEEEEc-cCCCCEEEEEECCEECcCCC----------CCEEEECCCCcccCEEEEEEEEeCCCCcEEEEEE
Confidence            366788888888774 67778999999998775431          357999999999999999999997654  34445


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        90 ~v~V   93 (96)
T 2ens_A           90 SISI   93 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            5554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.26  E-value=2.1e-11  Score=96.92  Aligned_cols=74  Identities=24%  Similarity=0.457  Sum_probs=64.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++..+....+              ..|.|.+++.+|+|.|+|.
T Consensus       118 ~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~~~~~~~~~--------------~~L~i~~v~~~d~G~Y~C~  183 (218)
T 3k0w_A          118 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNELPLTHETK--------------KLYMVPYVDLEHQGTYWCH  183 (218)
T ss_dssp             SCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETTEECTTCCS--------------SEEEESSCCGGGCEEEEEE
T ss_pred             CceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECCEECCCCCC--------------CEEEEeecChhcCEEEEEE
Confidence            36777788888999999999999999999999999999998865422              1488999999999999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.|..|..
T Consensus       184 a~n~~g~~  191 (218)
T 3k0w_A          184 VYNDRDSQ  191 (218)
T ss_dssp             EECSSCEE
T ss_pred             EEcCCCCc
Confidence            99987764

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.26  E-value=1.8e-11  Score=94.92  Aligned_cols=81  Identities=33%  Similarity=0.587  Sum_probs=67.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+....+.+|+++.|.|.+.|.|.+.+.|++++..+..+.++.+.    ..+    .|.|.++..+|+|.|+|.
T Consensus       100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~d~G~Y~C~  171 (192)
T 2iep_A          100 KPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVL----ESG----SLRIHNVQKEDAGQYRCV  171 (192)
T ss_dssp             EEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEEC----TTS----CEEESSCCGGGCEEEEEE
T ss_pred             CCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEe----cCC----cEEEecCChhhCEEEEEE
Confidence            466666677778999999999999999999999999999999877665432    122    388999999999999999


Q ss_pred             EEcCCEEEE
Q psy15667         82 AENRAGTCE   90 (286)
Q Consensus        82 a~n~~g~~~   90 (286)
                      |.|..|...
T Consensus       172 a~n~~g~~~  180 (192)
T 2iep_A          172 AKNSLGTAY  180 (192)
T ss_dssp             EEETTEEEE
T ss_pred             EEcCCCcEE
Confidence            999988763

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.26  E-value=1.3e-11  Score=89.26  Aligned_cols=80  Identities=21%  Similarity=0.395  Sum_probs=60.5

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEE-c-------CCCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFE-L-------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~-l-------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      |...+.+.++.+|++++|.|.+.+.|.+.+.|++++.. +       ..+.++.+..    ......+|.|.+++.+|+|
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~~L~I~~v~~~DsG   79 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLH----HSANQLSITVPNVTLQDEG   79 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEE----EETTEEEEEESSCCGGGCE
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEe----CCCCEEEEEECCCChHHCE
Confidence            44556677899999999999999999999999986543 2       1445554422    1111246999999999999


Q ss_pred             EEEEEEEcCCEEE
Q psy15667         77 EYACVAENRAGTC   89 (286)
Q Consensus        77 ~Y~C~a~n~~g~~   89 (286)
                      .|+|.|.|. |..
T Consensus        80 ~Y~C~a~n~-g~~   91 (124)
T 3rbg_A           80 VYKCLHYSD-SVS   91 (124)
T ss_dssp             EEEEEEESS-SEE
T ss_pred             EEEEEEEcC-CCC
Confidence            999999998 654

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.26  E-value=3e-11  Score=109.75  Aligned_cols=86  Identities=23%  Similarity=0.365  Sum_probs=74.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.|+|+|++.+|..+.++.+..    .++ ..+|.|.++..+|+|.|+|+
T Consensus       482 ~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v~W~k~~~el~~s~~~~i~~----~~~-~~~L~I~~~~~~D~G~Yt~~  556 (573)
T 3uto_A          482 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----NGN-DYGLTINRVKGDDKGEYTVR  556 (573)
T ss_dssp             SCEEEECCCCEEECTTSCEEEEEEEECSSCCEEEEEETTEECCSSSSEEEEE----ETT-EEEEEECSCCGGGCEEEEEE
T ss_pred             CCccccCCCCcEEeCCCcEEEEEEEEccCCCeEEEEECCEEcccCCcEEEEE----cCC-EEEEEEcCCCcccCcEEEEE
Confidence            4788888888999999999999999999999999999999999888887632    222 34699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|..+..
T Consensus       557 A~N~~G~~~~~  567 (573)
T 3uto_A          557 AKNSYGTKEEI  567 (573)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEeCCCcEEEE
Confidence            99999987643

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.26  E-value=1.4e-11  Score=96.74  Aligned_cols=80  Identities=33%  Similarity=0.638  Sum_probs=61.6

Q ss_pred             EEEEcccccCCCeEEEEEEEcCCE--E----EEE---------------------------ec-CCCCCeeEEEeeCCcc
Q psy15667         64 HVNISHVTVEDGGEYACVAENRAG--T----CEI---------------------------TP-YDSGPYLIAWFKDGRQ  109 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~~g--~----~~~---------------------------~~-~~~~~~~~~W~~~g~~  109 (286)
                      .|.|.+++.+|+|.|+|.+.|..|  .    ..+                           .. ...+++.+.|+++|..
T Consensus        69 ~L~i~~~~~~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~  148 (209)
T 1nbq_A           69 GITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV  148 (209)
T ss_dssp             EEECSCCCTTSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC
T ss_pred             EEEEeeCCHHHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEECCee
Confidence            488999999999999999998643  1    111                           00 1123468999999988


Q ss_pred             CcCCC---------------CcceEEEccCCCCCCeeEEEEEEcCCcce
Q psy15667        110 IPGRT---------------SSTSLVINPVGREDRGIYQCIARRSDGDV  143 (286)
Q Consensus       110 l~~~~---------------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~  143 (286)
                      +....               ....|.|.++..+|+|.|+|.|.|..|..
T Consensus       149 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~  197 (209)
T 1nbq_A          149 MPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGTP  197 (209)
T ss_dssp             CCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSCC
T ss_pred             CCCccccceeeeccceEEcCCcceEEEEeccccCCeEEEEEEeCCcCcc
Confidence            75321               34689999999999999999999998876

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.26  E-value=4.8e-11  Score=84.67  Aligned_cols=74  Identities=24%  Similarity=0.399  Sum_probs=57.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.  |.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.|    |....++.|.
T Consensus        31 v~~G~~v~l~C~~~-~~--p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a----~~~~~~~~l~  102 (113)
T 2edh_A           31 ATEGATAVLRCELS-KM--APVEWWKGHETLRDGDRHSLRQD-GARCELQIRGLVAEDAGEYLCMC----GKERTSAMLT  102 (113)
T ss_dssp             ECTTSCEEEEEEES-SC--CCCEEEESSSBCCCSSSEEEEEE-TTEEEEEECSCCSTTCEEEEEEE----TTEEEEEEEE
T ss_pred             EeCCCeEEEEEEEC-CC--CcEEEEECCEECCCCCcEEEEEC-CCEEEEEECCCChhhCEEEEEEe----CCCCEEEEEE
Confidence            55677777777764 32  67899999999877766665543 22458999999999999999999    6777788888


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus       103 V~  104 (113)
T 2edh_A          103 VR  104 (113)
T ss_dssp             EC
T ss_pred             Ee
Confidence            74

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.26  E-value=1.6e-12  Score=86.10  Aligned_cols=60  Identities=27%  Similarity=0.552  Sum_probs=49.0

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccc-ccCCCeEEEEEEEc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV-TVEDGGEYACVAEN   84 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C~a~n   84 (286)
                      +..+++..|++|+|+|.+.|+|.  |+|+|||.+|+.+.          .+    .|.|.++ ..+|+|.|+|.|.+
T Consensus         6 p~~~v~~~G~~v~L~C~~~g~P~--i~W~kdg~~l~~~~----------~~----~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E            6 IEYKVSISGTSVELTCPLDSDEN--LKWEKNGQELPQKH----------DK----HLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             CCCEEEEETTEEEEECSSCCCSS--CEEEETTEECTTCC----------SS----CCBCCSCCTTTTCSCEEEECSS
T ss_pred             CceeEEEcCCeEEEEEECCCCCc--EEEEECCEECcCCC----------CC----EEEECccCccCcCEEEEEEEcc
Confidence            44567789999999999999983  99999999986431          11    3789996 78999999999875

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.25  E-value=3.5e-11  Score=97.28  Aligned_cols=81  Identities=20%  Similarity=0.381  Sum_probs=61.3

Q ss_pred             EEEEcccccCCCeEEEEEEEcCCE---------EEEEecC-------------------------------CCCCeeEEE
Q psy15667         64 HVNISHVTVEDGGEYACVAENRAG---------TCEITPY-------------------------------DSGPYLIAW  103 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~~g---------~~~~~~~-------------------------------~~~~~~~~W  103 (286)
                      .|.|.+++.+|+|.|+|.|.|..+         .+.+...                               ..+++.+.|
T Consensus        91 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W  170 (250)
T 2fbo_J           91 TLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTW  170 (250)
T ss_dssp             CEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEEEE
T ss_pred             eEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCeeEE
Confidence            489999999999999999998655         2222110                               113458999


Q ss_pred             eeCCccCcCC------------------------C-----CcceEEEccCCCCCCeeEEEEEEcCCccee
Q psy15667        104 FKDGRQIPGR------------------------T-----SSTSLVINPVGREDRGIYQCIARRSDGDVA  144 (286)
Q Consensus       104 ~~~g~~l~~~------------------------~-----~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~  144 (286)
                      +|++..+...                        .     ....|.|.++..+|+|.|+|.|.|..|...
T Consensus       171 ~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~g  240 (250)
T 2fbo_J          171 YTGPTFFENYETGTYQPLANKNQFGITWFSSEIAGRASFSGARNLVIRAAKITDAGRVWCELATGQGELD  240 (250)
T ss_dssp             EEEEECSSCSSSCEEEEEEEECTTSCEEECTTTTTSEEEETTTEEEECSCCGGGCEEEEEEEESSSSGGG
T ss_pred             EeCCCcccccccCcceeEeccCCCCccccCceEecccccCCccEEEEecCCcccCEEEEEEecCCccccC
Confidence            9998876431                        1     226899999999999999999999777543

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.25  E-value=2e-11  Score=94.62  Aligned_cols=78  Identities=19%  Similarity=0.352  Sum_probs=64.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+....+.+|+++.|.|.+.|+|.|.+.|++++..+..  +.++...    .++    .|.|.++..+|+|.|+
T Consensus       100 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~----~~~----~L~i~~~~~~d~G~Y~  171 (191)
T 1epf_A          100 KLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVL----SNN----YLQIRGIKKTDEGTYR  171 (191)
T ss_dssp             CSEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEEC----TTS----CEEETTCCGGGCEEEE
T ss_pred             CceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEECCEEeeccCCceEEEe----cCC----eEEECCCChhhCEEEE
Confidence            67888888888999999999999999999999999999998853  3344321    122    3889999999999999


Q ss_pred             EEEEcCCE
Q psy15667         80 CVAENRAG   87 (286)
Q Consensus        80 C~a~n~~g   87 (286)
                      |.|.|..+
T Consensus       172 C~a~n~~~  179 (191)
T 1epf_A          172 CEGRILAR  179 (191)
T ss_dssp             EEEEEGGG
T ss_pred             EEEEEecc
Confidence            99999763

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.25  E-value=1.8e-11  Score=85.58  Aligned_cols=69  Identities=19%  Similarity=0.282  Sum_probs=52.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.+|+.+.|.|.+. +.|.+ +.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..+.
T Consensus        22 v~~G~~v~l~C~~~-~~p~~-v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~n~~~~   90 (104)
T 2e6p_A           22 FTTSERVVLTCELS-RVDFP-ATWYKDGQKVEESELLVVKMD-GRKHRLILPEAKVQDSGEFECRTEGVSAF   90 (104)
T ss_dssp             EESSSCEECCEECS-STTCC-CEEEETTEECCCBTTBEEEEE-TTEEEEEESSCCTTTCEEEEEECSSCCCC
T ss_pred             EeCCCcEEEEEEec-CCCCc-cEEeeCCEECCCCCCEEEEeC-CCEEEEEECCCChhhCEEEEEEECCceEE
Confidence            45666667777654 45566 899999999877666655432 23568999999999999999999998653

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.24  E-value=3.7e-11  Score=84.97  Aligned_cols=77  Identities=13%  Similarity=0.228  Sum_probs=57.9

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC----------CceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----------PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~----------~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..+.+|+.+.|.|.++.   .+.+.|+|||+.+..+.          ++.+.. .+....|.|.++..+|+|.|+|...+
T Consensus        18 ~~v~eG~~a~f~C~vs~---~p~v~W~knG~~l~~~~~~~~~~~~~~r~~i~~-~g~~~~L~I~~v~~~D~G~Y~~~~~~   93 (112)
T 2e6q_A           18 VQVYDGEDAVFSLDLST---IIQGTWFLNGEELKSNEPEGQVEPGALRYRIEQ-KGLQHRLILHAVKHQDSGALVGFSCP   93 (112)
T ss_dssp             EEEETTCEEEEEEEESS---CCCCEEEESSCBCCSSCCCTTSCTTSCEEEECC-BTTEEEEEEESCCSTTCSEEEEEEET
T ss_pred             eEEcCCCcEEEEEEECC---CCeEEEEECCEECccCcccccccccccEEEEEe-CCcEEEEEECCCCHHHCccEEEEEEC
Confidence            34678888888888863   67899999999998775          554433 23356899999999999999874443


Q ss_pred             cccceeeEEEEEEC
Q psy15667        273 TAAQARYSSKLQVK  286 (286)
Q Consensus       273 ~~g~~~~~~~L~V~  286 (286)
                         ....++.|.|+
T Consensus        94 ---~~~ssA~L~V~  104 (112)
T 2e6q_A           94 ---GVQDSAALTIQ  104 (112)
T ss_dssp             ---TEEEEEEEEEE
T ss_pred             ---CeeEEEEEEEe
Confidence               34568888874

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.24  E-value=4.4e-11  Score=93.11  Aligned_cols=77  Identities=22%  Similarity=0.421  Sum_probs=64.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|++++..+......        ..  ...|.|.+++  |+|.|+|
T Consensus       106 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~~--------~~--~~~L~i~~~~--d~G~Y~C  173 (195)
T 2c5d_C          106 LPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGH--------GP--QRSLHVPGLN--KTSSFSC  173 (195)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEESSCBSSSSTTS--------SC--CEEEEECCCS--SCEEEEE
T ss_pred             CCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEECCEeccCCCCc--------CC--CCeEEEcccc--cCceEEE
Confidence            6888888888899999999999999999999 99999999988754332        01  1248899987  8999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus       174 ~a~N~~g~~~  183 (195)
T 2c5d_C          174 EAHNAKGVTT  183 (195)
T ss_dssp             EEEETTEEEE
T ss_pred             EEEcCCCceE
Confidence            9999998764

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.24  E-value=9e-12  Score=98.72  Aligned_cols=81  Identities=31%  Similarity=0.495  Sum_probs=65.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCCC--------CeeEeceEEecccceeEEEEEccccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTN--------NRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~--------~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ||.|...+....+.+|+.+.|.|.+ .|.|.|.+.|++++..+...        .++..    . ...   .|.|.+++.
T Consensus       108 ~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~g~~~~~~~~~~~~~~~~~~~----~-~~~---~L~i~~~~~  179 (217)
T 2vr9_A          108 RDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKDGVPLDDLKAMSFGASSRVRI----V-DGG---NLLISNVEP  179 (217)
T ss_dssp             CCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEETTEEECCCCCC---CCCSEEE----E-TTT---EEEESSCCS
T ss_pred             CCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEECCcCCCcccccccccCCcEEe----c-CCC---cEEEeeCCH
Confidence            5566666777789999999999998 89999999999999998732        22211    1 111   488999999


Q ss_pred             CCCeEEEEEEEcCCEEEE
Q psy15667         73 EDGGEYACVAENRAGTCE   90 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~~~   90 (286)
                      +|+|.|+|.|.|..|...
T Consensus       180 ~d~G~Y~C~a~N~~G~~~  197 (217)
T 2vr9_A          180 IDEGNYKCIAQNLVGTRE  197 (217)
T ss_dssp             TTCEEEEEEEEETTEEEE
T ss_pred             HHCeEEEEEEEcccceec
Confidence            999999999999999765

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.24  E-value=1.9e-11  Score=85.04  Aligned_cols=74  Identities=32%  Similarity=0.558  Sum_probs=56.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+.  .|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|.    ..++.|.
T Consensus        23 v~~G~~v~L~C~~~--~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~~~----~~~~~l~   95 (102)
T 2eo1_A           23 AEAGASATLSCEVA--QAQTEVTWYKDGKKLSSSSKVRVEAV-GCTRRLVVQQAGQAEAGEYSCEAGGQ----QLSFRLQ   95 (102)
T ss_dssp             EETTCCEEECCBCS--CSSSCCEEEETTEECCCCSSEEEEEE-TTEEEEEETTCCTTTCSCEEEEETTE----ECCEEEE
T ss_pred             EeCCCcEEEEEEec--CCCCceEEEECCEECCCCCCEEEEEc-CCEEEEEECCCCcccCEEEEEEcCCC----cEEEEEE
Confidence            56788888888775  67789999999999877666655432 23468999999999999999999654    3445665


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        96 V   96 (102)
T 2eo1_A           96 V   96 (102)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.23  E-value=3.5e-11  Score=87.00  Aligned_cols=35  Identities=17%  Similarity=0.341  Sum_probs=32.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|+|.|.|. |.....+.|.|
T Consensus        65 ~~~L~I~~v~~~DsG~Y~C~a~n~-g~~~~~~~l~V   99 (124)
T 3rbg_A           65 QLSITVPNVTLQDEGVYKCLHYSD-SVSTKEVKVIV   99 (124)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEESS-SEEEEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEEcC-CCCcEEEEEEE
Confidence            568999999999999999999999 99999988887

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.23  E-value=2.4e-10  Score=93.86  Aligned_cols=76  Identities=22%  Similarity=0.418  Sum_probs=43.7

Q ss_pred             CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC-c-eeeec-C--CCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-V-NVSDL-D--SFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~-~-~~~~~-~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      +|+.+.|.|.+....| ++.+.|  ++..+..... . ..... .  .....|.|.....+| |.|+|.+.|..+.....
T Consensus       182 ~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~~-~~ytC~v~h~~~~~~~~  258 (267)
T 3u1s_H          182 SGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVD  258 (267)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGGT-CCCEEEEEEGGGTEEEE
T ss_pred             CCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcCC-CEEEEEEEECCCCcceE
Confidence            4566666666554334 456777  4443322100 0 00000 0  113468898888889 99999999998776665


Q ss_pred             EEEEE
Q psy15667        281 SKLQV  285 (286)
Q Consensus       281 ~~L~V  285 (286)
                      ..+.+
T Consensus       259 ~~~~~  263 (267)
T 3u1s_H          259 KKVEP  263 (267)
T ss_dssp             EECCC
T ss_pred             EEccc
Confidence            55543

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.23  E-value=7.1e-11  Score=91.03  Aligned_cols=85  Identities=21%  Similarity=0.403  Sum_probs=66.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEee---CCE-EcCC--CCeeEeceEEecccceeEEEEEcccc-cC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTL---DGF-ELPT--NNRFVIGQFVSGHGDVISHVNISHVT-VE   73 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~---~~~-~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~-~~   73 (286)
                      ||.|...+....+.+|++++|.|.+.|+| .|.+.|++   ++. .+..  +.++.+..    .+ ....|.|.+++ .+
T Consensus        83 ~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~----~~-~~~~L~i~~v~~~~  157 (184)
T 3b5h_A           83 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS----SQ-GRSELHIENLNMEA  157 (184)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE----ET-TEEEEEECSCCTTT
T ss_pred             CCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCCCCEEeecCCCCEEEEEe----cC-CeeEEEEeeccccc
Confidence            67888777777899999999999999999 89999999   554 4432  24554321    12 22469999999 89


Q ss_pred             CCeEEEEEEEcCCEEEEE
Q psy15667         74 DGGEYACVAENRAGTCEI   91 (286)
Q Consensus        74 D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+|.|+|.|.|..|....
T Consensus       158 d~G~Y~C~a~N~~g~~~~  175 (184)
T 3b5h_A          158 DPGQYRCNGTSSKGSDQA  175 (184)
T ss_dssp             SSEEEEEEEEETTEEEEE
T ss_pred             cCceEEEEEEeCCCcceE
Confidence            999999999999987653

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.23  E-value=3e-12  Score=89.08  Aligned_cols=66  Identities=18%  Similarity=0.350  Sum_probs=49.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC----CceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +.+|+.+.|.|.+. +.| +.+.|+|+|..+....    ++.+.. ......|.|.++..+|+|.|+|.|.|.
T Consensus        20 v~~G~~v~l~C~~~-~~~-~~v~W~k~g~~i~~~~~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~n~   89 (101)
T 2edk_A           20 VFVGDRVEMAVEVS-EEG-AQVMWMKNGVELTREDSFKARYRFKK-DGKRHILIFSDVVQEDRGRYQVITNGG   89 (101)
T ss_dssp             EESSCCCBCCEEES-CSS-CCCEEEESSCBCCCSCCSSCCCEEEE-CSSEEEEECSSCCGGGCSBEEEECSSC
T ss_pred             EcCCCCEEEEEEEe-CCC-CEEEEEECCEECCCCCCcceeEEEEE-CCCEEEEEECCCChhhCEEEEEEEcCC
Confidence            45666677777664 445 7899999999887655    344443 233567999999999999999999983

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.22  E-value=1.9e-10  Score=89.42  Aligned_cols=118  Identities=14%  Similarity=0.112  Sum_probs=66.8

Q ss_pred             EEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCccccc
Q psy15667        119 LVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESF  198 (286)
Q Consensus       119 l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~  198 (286)
                      +.|.+++ +|.+.|.|.+.... ......+.|.|+..|.......                                   
T Consensus        54 ~~ls~vs-~d~~~~~C~~~c~~-~~~~~~v~l~Vy~~P~~v~i~~-----------------------------------   96 (196)
T 3bn3_B           54 RQLVDIR-EPETQPVCFFRCAR-RTLQARGLIRTFQRPDRVELMP-----------------------------------   96 (196)
T ss_dssp             EEEEEEC-SSEECCEEEEEETT-EEEEEECEEEEEBCCCCCEECC-----------------------------------
T ss_pred             EEEEEEc-cCCCceEEEEECCC-CceEEEEEEEEecCCCcCEEcc-----------------------------------
Confidence            4556666 66666777765532 3334567777776653211000                                   


Q ss_pred             ccccCCCCCCCeEEEEEeeecCCCCCe--EEEEeCCeeCCCCCCc-eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        199 AFPFDGLPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPV-NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       199 ~~~~~~~~~g~~~~l~c~~~~~~p~~~--~~W~~~g~~~~~~~~~-~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                        ....+.+|+.+.|.|.+..+.|...  ++|+|+++.+...... ..........++.+.....+|...|+|.|.|.++
T Consensus        97 --~~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlkg~~~l~~~~~~~~~~~~~~~t~~~~~~~~r~D~g~~~sC~A~l~l~  174 (196)
T 3bn3_B           97 --LPPWQPVGENFTLSCRVPGAGPRASLTLTLLRGAQELIRRSFAGEPPRARGAVLTATVLARREDHGANFSCRAELDLR  174 (196)
T ss_dssp             --CCSSEETTSEEEEEEEETTCBCGGGEEEEEEETTEEEEEEECTTSCTTCCCEEEEEEEECCGGGTTCEEEEEEEEECG
T ss_pred             --CCccccCCCcEEEEEEeCCccCCCCcEEEEEeCCEEeeccccccccccccceeEEEEEeeeeccCCCeEEEEEEccCC
Confidence              0112557788888888777677655  7999999877321100 0000001124455554444445599999999877

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.22  E-value=8.2e-11  Score=90.46  Aligned_cols=75  Identities=24%  Similarity=0.406  Sum_probs=63.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|...+....+.+|+.+.|.|.+.|.|.| .+.|++++..+.....          .  ...|.|.++  +|+|.|+|
T Consensus        98 ~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~~~~~~----------~--~~~L~i~~~--~d~G~Y~C  163 (182)
T 1rhf_A           98 VPFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----------S--PSVLNVTGV--TQSTMFSC  163 (182)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----------S--SEEEEECCC--SSCEEEEE
T ss_pred             CCeEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEcCCeECCCCCC----------C--ceEEEEecc--ccCeEEEE
Confidence            7888888888899999999999999999999 9999999998854321          1  124889988  59999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus       164 ~a~N~~g~~~  173 (182)
T 1rhf_A          164 EAHNLKGLAS  173 (182)
T ss_dssp             EEEETTEEEE
T ss_pred             EEECCCCCcc
Confidence            9999998764

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.22  E-value=6.9e-11  Score=93.65  Aligned_cols=79  Identities=27%  Similarity=0.436  Sum_probs=58.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC--CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....  ++.+... .....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus        30 ~~~G~~v~l~C~~~-g~p~p~i~W~~~g~~l~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  107 (215)
T 3mtr_A           30 TWEGNQVNITCEVF-AYPSATISWFRDGQLLPSSNYSNIKIYNT-PSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFI  107 (215)
T ss_dssp             ECTTCCEEEEEEEE-EESCCEEEEEETTEESSCSSSCSEEEEEE-TTEEEEEECCCSGGGCEEEEEEEECSSCEEEEEEE
T ss_pred             EECCCCEEEEEEEe-ecCCCEEEEEECCeECCCCCCccEEEecC-CCeeEEEEecCChhhCeEEEEEEEECCCceEEEEE
Confidence            34555555555543 45667888999998886553  3333322 23578999999999999999999999999998888


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus       108 l~v  110 (215)
T 3mtr_A          108 LVQ  110 (215)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            876

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.21  E-value=5.1e-11  Score=83.02  Aligned_cols=75  Identities=25%  Similarity=0.340  Sum_probs=59.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+  +.|.+.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.    +|....++.|
T Consensus        19 ~v~~G~~v~l~C~~--~~p~~~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l   91 (103)
T 2dku_A           19 QVEEKGTAVFTCKT--EHPAATVTWRKGLLELRASGKHQPSQE-GLTLRLTISALEKADSDTYTCD----IGQAQSRAQL   91 (103)
T ss_dssp             EEETTSEEEEEEEC--SSCCSCCEEEESSCBCCSSSSEEEEEE-TTEEEEEEESCCTTTCSEEEEE----CSSCBCCEEE
T ss_pred             EEeCCCcEEEEEEe--CCCCCeEEEEeCCEECCCCCeEEEEeC-CCEEEEEECCCCcccCEEEEEE----eCCceEEEEE
Confidence            35678888888883  677889999999999877666665432 2345899999999999999998    6777777888


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        92 ~V   93 (103)
T 2dku_A           92 LV   93 (103)
T ss_dssp             EE
T ss_pred             EE
Confidence            76

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=99.19  E-value=1.2e-10  Score=81.98  Aligned_cols=77  Identities=26%  Similarity=0.342  Sum_probs=57.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EE---c-C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FE---L-P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...+.++++.+|++++|.|.+.+.|.+.+.|+|+.  ..   | .        ...|+.+.    . ......|.|.+
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~----~-~~~~~~L~I~~   77 (108)
T 1jhl_L            3 ELTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGS----G-SGTDFTLTISS   77 (108)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----E-SSSEEEEEECS
T ss_pred             ceeccCCeeEEcCCCCEEEEeEECCCCCceEEEEEECCCCCCEEEEEcCCCcCCCCCceEEEE----e-cCCEEEEEECC
Confidence            4556677789999999999999999999999999863  11   1 0        12344331    1 11224699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+.|.
T Consensus        78 v~~~DsG~Y~C~~~n~   93 (108)
T 1jhl_L           78 LEPEDFAMYICQQHNE   93 (108)
T ss_dssp             CCTTCCSEEEEEECSS
T ss_pred             CCHHHCEEEEEEEccC
Confidence            9999999999999885

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.18  E-value=4.4e-11  Score=83.36  Aligned_cols=74  Identities=19%  Similarity=0.340  Sum_probs=53.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+ +.|+|++..+....++.+... .....|.|.++..+|+|.|+|.    +|....++.|.
T Consensus        20 v~~G~~v~l~C~~~-~~p~~-v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~----~g~~~~~~~l~   92 (103)
T 2e7b_A           20 VLEGGAATLRCVLS-SVAAP-VKWCYGNNVLRPGDKYSLRQE-GAMLELVVRNLRPQDSGRYSCS----FGDQTTSATLT   92 (103)
T ss_dssp             EESSSCEEEEEECS-SCCCS-CEEEESSSBCCCSSSEEEEEC-SSEEEEEECSCCTTTCCCEEEE----CSSCBCCBCEE
T ss_pred             EECCCcEEEEEEEe-CCCCC-eEEEECCEECCCCCcEEEEEc-CCEEEEEEccCCcccCEEEEEE----ECCcEEEEEEE
Confidence            44566666666653 45556 999999998876666665532 2345799999999999999998    45556666666


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        93 V   93 (103)
T 2e7b_A           93 V   93 (103)
T ss_dssp             E
T ss_pred             E
Confidence            5

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.18  E-value=2.2e-09  Score=92.07  Aligned_cols=65  Identities=23%  Similarity=0.264  Sum_probs=42.2

Q ss_pred             cceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCce-E-EecCC-CEEEEeeEeee
Q psy15667        116 STSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKV-T-AIDGE-GLSIKCPVAGY  181 (286)
Q Consensus       116 ~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~-~-~~~g~-~~~l~c~~~~~  181 (286)
                      ...|.|.++..+|+|.|+|.+.+..+.. .....|.|...|.+...+.. . +..|+ .++|.|.+.+.
T Consensus       253 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~-~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~Gf  320 (401)
T 3f8u_B          253 NGTFWLPRVQPFQEGTYLATIHLPYLQG-QVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHF  320 (401)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEE-EEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEE
T ss_pred             cEEEEECcCCHhhCceEEEEEEecccce-eEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCC
Confidence            4689999999999999999999876643 34566777665554332211 1 12344 45566666553

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.18  E-value=1.2e-10  Score=91.40  Aligned_cols=79  Identities=23%  Similarity=0.447  Sum_probs=62.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+......  +.+|+++.|.|.+.+.| |.+.|+++|..+..+.++.+.    ..+   ..|.|.++..+|+|.|+|.|
T Consensus       113 p~i~~~~~~--~~~g~~v~l~C~~~~~p-p~i~W~~~g~~l~~~~~~~~~----~~~---~~L~i~~v~~~d~G~Y~C~a  182 (208)
T 3r4d_A          113 PFLQVTNTT--VKELDSVTLTCLSNDIG-ANIQWLFNSQSLQLTERMTLS----QNN---SILRIDPIKREDAGEYQCEI  182 (208)
T ss_dssp             CEEEESCSS--CCTTCCEEEEEECSCTT-CEEEEEETTEECCCCSSEEEE----TTT---TEEEESSCCGGGCEEEEEEE
T ss_pred             CEEecCCce--EeeCCCEEEEEECCCCC-CceEEEECCEeCCCCCCeEEc----CCC---CEEEEeccCHHhCeEEEEEE
Confidence            444444333  89999999999999977 799999999999877776432    122   24899999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|....
T Consensus       183 ~N~~g~~~s  191 (208)
T 3r4d_A          183 SNPVSVRRS  191 (208)
T ss_dssp             ECTTCCEEC
T ss_pred             ecCCCcccC
Confidence            999887653

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.18  E-value=2.4e-10  Score=77.96  Aligned_cols=77  Identities=12%  Similarity=0.305  Sum_probs=56.6

Q ss_pred             ccccCCCcEEEEEEeec-CCCCeeEEeeCC----EEcCCCCeeEeceEEecccc-eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         12 QTLQPGPAVSLKCIASG-NPTPDIGWTLDG----FELPTNNRFVIGQFVSGHGD-VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~----~~l~~~~~~~~~~~~~~~~~-~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .++.+|+.+.|.|.+.+ .|.|+|+|.|.+    .+|........+.  ...++ ....|.|.++..+|+|.|+|.|.|.
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w--~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~  101 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSW--EENRSVPVFVLHFKPIHLSDNGSYSCSTNFN  101 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEE--ECSSSSCEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecce--eccCCceeEEEEEeeEEEcCCccEEEEeeCC
Confidence            46889999999999976 689999999976    4554322211111  11222 3446899999999999999999999


Q ss_pred             CEEEE
Q psy15667         86 AGTCE   90 (286)
Q Consensus        86 ~g~~~   90 (286)
                      .|..+
T Consensus       102 ~g~ie  106 (122)
T 1xau_A          102 SQVIN  106 (122)
T ss_dssp             TEEEE
T ss_pred             CCcee
Confidence            88775

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.17  E-value=6.3e-11  Score=93.25  Aligned_cols=79  Identities=27%  Similarity=0.528  Sum_probs=64.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCC-eeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNN-RFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~-~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+...+.+..+.+|+.++|.|.+ .|.|.|.+.|++++..+.... ++..      .++   .|.|.++..+|+|.|+
T Consensus       111 ~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~------~~~---~L~i~~~~~~d~G~Y~  181 (212)
T 2v9r_A          111 RDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITI------RGG---KLMITYTRKSDAGKYV  181 (212)
T ss_dssp             CSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEE------ETT---EEEESSCCGGGCEEEE
T ss_pred             cccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEc------cCC---eEEEeeCCHhhCeeEE
Confidence            4555566677789999999999998 899999999999999987543 3321      122   4889999999999999


Q ss_pred             EEEEcCCEEE
Q psy15667         80 CVAENRAGTC   89 (286)
Q Consensus        80 C~a~n~~g~~   89 (286)
                      |.|.|..|..
T Consensus       182 C~a~N~~g~~  191 (212)
T 2v9r_A          182 CVGTNMVGER  191 (212)
T ss_dssp             EEEEETTEEE
T ss_pred             EEEecccCce
Confidence            9999998875

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.17  E-value=7e-11  Score=80.57  Aligned_cols=37  Identities=16%  Similarity=0.372  Sum_probs=28.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V~  286 (286)
                      ...|.|..|.++|+|.|+|.|.|+.|.. +++..|.|+
T Consensus        78 ~fiL~f~~V~~sDsG~YrCsAn~~~g~ieSHs~ti~V~  115 (122)
T 1xau_A           78 VFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHVR  115 (122)
T ss_dssp             EEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEEC
T ss_pred             eEEEEEeeEEEcCCccEEEEeeCCCCceeeeEEEEEEE
Confidence            3478999999999999999999987743 444445553

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=99.17  E-value=1.4e-10  Score=105.31  Aligned_cols=81  Identities=26%  Similarity=0.330  Sum_probs=72.1

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. |.|.|.++|+|+++++..+.++.+... ....+|.|.++..+|+|.|+|.|.|..|+.+..+.|
T Consensus       493 ~v~~G~~~~~~~~v~-g~P~P~v~W~k~~~el~~s~~~~i~~~-~~~~~L~I~~~~~~D~G~Yt~~A~N~~G~~~~~v~l  570 (573)
T 3uto_A          493 EVGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFL  570 (573)
T ss_dssp             EECTTSCEEEEEEEE-CSSCCEEEEEETTEECCSSSSEEEEEE-TTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEeCCCcEEEEEEEE-ccCCCeEEEEECCEEcccCCcEEEEEc-CCEEEEEEcCCCcccCcEEEEEEEeCCCcEEEEEEE
Confidence            367899999999985 889999999999999988887776654 346789999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|.
T Consensus       571 ~Vt  573 (573)
T 3uto_A          571 NVT  573 (573)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            984

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.16  E-value=6e-11  Score=92.66  Aligned_cols=83  Identities=17%  Similarity=0.100  Sum_probs=49.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|... ....+.+|++++|.|.+.+.| +.+.|+|||..+.......  . ....+.....|.|.+++.+|+|.|+|.
T Consensus       100 ~p~i~~~-~~~~v~~G~~v~L~C~~~~~p-~~~~W~k~g~~~~~~~~~~--~-~~~~~~~~~~L~I~~v~~~D~G~Y~C~  174 (196)
T 2d3v_A          100 KPTLSAL-PSPVVTSGENVTLQCGSRLRF-DRFILTEEGDHKLSWTLDS--Q-LTPSGQFQALFPVGPVTPSHRWMLRCY  174 (196)
T ss_dssp             CCEEEC------------CEEEEEESSCC-SEEEEEEC---CCEEEEEC--E-ECTTSCEEEEEECCCCBTTBCEEEEEE
T ss_pred             CCeEEcc-CCccccCCCcEEEEEEcCCCC-CEEEEEccCCccccccccc--c-cccCCCceeEEEeeecCcccCeeEEEE
Confidence            4555543 346789999999999999999 8999999998875322110  0 011122234699999999999999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.|..+..
T Consensus       175 a~n~~~~~  182 (196)
T 2d3v_A          175 GSRRHILQ  182 (196)
T ss_dssp             EEETTEEE
T ss_pred             EEccCCCC
Confidence            99976543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=99.16  E-value=7.5e-11  Score=82.66  Aligned_cols=75  Identities=17%  Similarity=0.231  Sum_probs=56.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.|...+.. ++.+|++|+|.|.+.+.+ ..+.|+|+|..+.. .++      ...+ ....|.|.+++.+|+|.|.|.
T Consensus         5 kP~i~~~p~~-~v~~G~~VtL~C~~~~~~-~~~~w~k~g~~~~~-~~~------~~~~-~~~~l~I~~v~~~dsG~Y~C~   74 (105)
T 2vsd_A            5 QPSLSLHPSQ-GVSLGDTVTLRCHLPRMA-AWVQLWLNGTLRFD-KEK------DKEQ-DAAEFSFAVTNLEDAGTYQCR   74 (105)
T ss_dssp             CCEEEEESCS-SCCTTCEEEEEEECCSSC-EEEEEEETTEEEEE-EEE------CTTC-SEEEEEEECCSGGGCEEEEEE
T ss_pred             CCEEEeCCCC-CcCcCCCEEEEEEcCCCC-cEEEEEECCcccee-eec------cCCC-CEEEEEECCCCHHHCeEEEEE
Confidence            5778777655 899999999999998764 67889999976532 111      1111 123589999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      +.|..
T Consensus        75 ~~n~~   79 (105)
T 2vsd_A           75 YQVSE   79 (105)
T ss_dssp             EEEET
T ss_pred             EEcCC
Confidence            98853

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.16  E-value=7.8e-11  Score=93.02  Aligned_cols=89  Identities=15%  Similarity=0.254  Sum_probs=64.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+.+..+.+|+.++|.|.+.|. |+ +.+.|++||..|..+.......  ...+.  ....|.|.++..+|+|.
T Consensus       114 ~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~--~~~~~~~~~s~L~i~~~~~~d~G~  191 (213)
T 3mj8_L          114 APSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWEADGTPITQGVKTTQPS--KSDSKYMATSYLTMTADAWKSRNT  191 (213)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCE--EETTEEEEEEEEEEESHHHHSCSC
T ss_pred             CCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEEcCCcccCCCcccCCcC--ccCCcEEEEEEEEEeHHHcCCCCE
Confidence            6778877777777799999999999985 43 4999999999986532111000  01111  12348999999999999


Q ss_pred             EEEEEEcCCEEEEEe
Q psy15667         78 YACVAENRAGTCEIT   92 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~   92 (286)
                      |+|.|.|..+....+
T Consensus       192 Y~C~a~n~~~~~~~~  206 (213)
T 3mj8_L          192 FICKVTHGGNTVEKS  206 (213)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEECCccEEee
Confidence            999999998776543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.16  E-value=8.9e-11  Score=90.81  Aligned_cols=121  Identities=14%  Similarity=0.249  Sum_probs=85.7

Q ss_pred             ccccCCCcEEEEEEee--cCCCCeeEEee--CCEEc----------CCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIAS--GNPTPDIGWTL--DGFEL----------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~--g~p~p~v~W~~--~~~~l----------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +...+|++|+|.|...  +.|.+.|.|++  ++..|          +.+.|+.+.    .++    +|.|.+++.+|+|.
T Consensus         9 v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~~~----~ng----sL~I~~v~~~DsG~   80 (182)
T 1hnf_A            9 TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLF----KNG----TLKIKHLKTDDQDI   80 (182)
T ss_dssp             EEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEEEC----TTS----CEEECSCCGGGCEE
T ss_pred             EEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEEEC----CCC----CEEECCCChhhCEE
Confidence            4668999999999543  35678999999  88776          234555431    233    48999999999999


Q ss_pred             EEEEEEcCCEEE------EEe----------------------cCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCCC
Q psy15667         78 YACVAENRAGTC------EIT----------------------PYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDR  129 (286)
Q Consensus        78 Y~C~a~n~~g~~------~~~----------------------~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d~  129 (286)
                      |+|.|.|..|..      .+.                      ....+++.+.|++||+.+.  .....|.+.. ..+|+
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~~p~~~~~W~~~g~~l~--~~~~~i~~~~-~~~d~  157 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQERVSKPKISWTCINTTLTCEVMNGTDPELNLYQDGKHLK--LSQRVITHKW-TTSLS  157 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEESSCEEE--EESSCEEEEC-CSCEE
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEccCcEEEEeEccCCCCCEEEEEECCEECC--CCCcEEEEec-ccCCC
Confidence            999999876532      111                      0112356899999999882  1223344433 58999


Q ss_pred             eeEEEEEEcCCcce
Q psy15667        130 GIYQCIARRSDGDV  143 (286)
Q Consensus       130 G~Y~C~a~~~~g~~  143 (286)
                      |.|+|.|.|..+..
T Consensus       158 G~Y~C~a~N~~~~~  171 (182)
T 1hnf_A          158 AKFKCTAGNKVSKE  171 (182)
T ss_dssp             EEEEEEEECSSCEE
T ss_pred             cEEEEEEEeCCCCc
Confidence            99999999998865

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.15  E-value=1.1e-10  Score=86.73  Aligned_cols=81  Identities=22%  Similarity=0.302  Sum_probs=60.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEe---------eCCEEcCCCCeeEeceEEecccceeEEEEEccccc
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWT---------LDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~---------~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      |+.|...+.++++.+|++++|.|.+.+.|.+.+.|+         +++..+ .+.|+.....    .....+|.|.+++.
T Consensus        38 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~-~~~r~~~~~~----~~~~~~L~I~~v~~  112 (145)
T 1z9m_A           38 QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRAL-RDNRIQLVTS----TPHELSISISNVAL  112 (145)
T ss_dssp             CCTTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECS-CCTTEEEEEE----CSSEEEEEECSCCG
T ss_pred             ccceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceec-ccCCEEEecC----CCCeEEEEECCCCh
Confidence            344556777889999999999999999999999999         444333 3345543211    11124699999999


Q ss_pred             CCCeEEEEEEEcCCEE
Q psy15667         73 EDGGEYACVAENRAGT   88 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~   88 (286)
                      +|+|.|+|.+.|. |.
T Consensus       113 ~DsG~Y~C~~~n~-~~  127 (145)
T 1z9m_A          113 ADEGEYTCSIFTM-PV  127 (145)
T ss_dssp             GGCEEEEEEECSS-SC
T ss_pred             hhCEEEEEEEEcC-CC
Confidence            9999999999997 53

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.15  E-value=1.3e-10  Score=95.10  Aligned_cols=89  Identities=18%  Similarity=0.324  Sum_probs=62.7

Q ss_pred             EEEEcccccCCCeEEEEEEEcCCEE------EEEe----------------------c---CCCCCeeEEEeeC-CccCc
Q psy15667         64 HVNISHVTVEDGGEYACVAENRAGT------CEIT----------------------P---YDSGPYLIAWFKD-GRQIP  111 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~~g~------~~~~----------------------~---~~~~~~~~~W~~~-g~~l~  111 (286)
                      .|.|.+++.+|+|.|+|.|.|..+.      ..+.                      .   ...+++.+.|+++ +..+.
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~~~~~  164 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTE  164 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECTTCSS
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCCccccccCCcEEEEEEecCCCCCCccceEEEecCCCCCc
Confidence            4899999999999999999875431      1110                      0   1124568999994 32110


Q ss_pred             -----------------------C--------CCCcceEEEccCCCCCCeeEEEEEEcCCcceeeeeeEEEEc
Q psy15667        112 -----------------------G--------RTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQLG  153 (286)
Q Consensus       112 -----------------------~--------~~~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~  153 (286)
                                             .        ......|.|.++..+|+|.|+|.|.|..|.. ...+.|.|.
T Consensus       165 ~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~-~~~~~l~V~  236 (268)
T 3mj6_A          165 EETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLES-RKTIVLHVV  236 (268)
T ss_dssp             CEEEEEEETTSSSCEEECSSTTTTTEEECSCGGGTBCCEEECSCCGGGCEEEEEEEEETTEEE-EEEEEEEEE
T ss_pred             ceeEEEecCCCCccccccccccccceEeeccCCCCeEEEEECcCChhhCeEEEEEEEcCCceE-EEEEEEEEE
Confidence                                   0        0124679999999999999999999988764 456777773

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.14  E-value=7.3e-11  Score=86.80  Aligned_cols=28  Identities=32%  Similarity=0.604  Sum_probs=26.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      ...|.|.++..+|+|.|+|.|.|..|..
T Consensus        89 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~  116 (137)
T 3qr2_A           89 ASTISIDTLVEEDTGTYECRASNDPDRN  116 (137)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECCTTSS
T ss_pred             ceEEEECCCCcccCEEEEEEEEecCCcc
Confidence            5689999999999999999999999975

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.14  E-value=1.5e-10  Score=81.38  Aligned_cols=74  Identities=26%  Similarity=0.425  Sum_probs=54.3

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. +.  +.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.|.|.    ..++.|
T Consensus        19 ~v~~G~~v~l~C~~~-~~--p~v~W~k~~~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~~~l   90 (108)
T 2dm7_A           19 EASEGATATLQCELS-KV--APVEWKKGPETLRDGGRYSLKQD-GTRCELQIHDLSVADAGEYSCMCGQE----RTSATL   90 (108)
T ss_dssp             EEETTSCEEEEEEBS-SS--CCCEEESSSSBCCSSSSCEEEEE-TTEEEEEESSCCTTTCSEEEEEETTE----EEEEEC
T ss_pred             EEeCCCcEEEEEEeC-CC--CeeEEEECCEECCCCCCEEEEec-CCEEEEEECCCCcccCEEEEEEEcCC----EEEEEE
Confidence            356777778888764 22  67899999998876666665543 23456999999999999999999653    455555


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        91 ~V   92 (108)
T 2dm7_A           91 TV   92 (108)
T ss_dssp             EE
T ss_pred             EE
Confidence            55

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.14  E-value=5.4e-11  Score=84.97  Aligned_cols=78  Identities=28%  Similarity=0.420  Sum_probs=45.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC---CceeeecCCCeeeEE-----EcccCCCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF---PVNVSDLDSFSSLLS-----INSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~---~~~~~~~~~~~~~L~-----i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++..+....   +.......  ++.+.     |.++..+|+|.|+|.|.|..|.
T Consensus        21 v~~G~~v~L~C~~~-g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~--~~~~~~~~i~~~~v~~~D~G~Y~C~a~N~~G~   97 (117)
T 2v9t_A           21 VSKGEPATLNCKAE-GRPTPTIEWYKGGERVETDKDDPRSHRMLLP--SGSLFFLRIVHGRKSRPDEGVYVCVARNYLGE   97 (117)
T ss_dssp             ECTTCCEEECCEEE-EESCCEEEEEETTEECCCTTTCSSCSEEECT--TSCEEESSCCCBTTBCSSCEEEEEEEEETTEE
T ss_pred             EcCCCcEEEEEECC-ccCCCeEEEEECCEeccccCCCCcceeEEec--CCcEEEEEEEeCCCCcCcCEEEEEEEEeCccc
Confidence            33455555555442 45566777888887765432   11111111  12222     3366899999999999999997


Q ss_pred             eee-EEEEEE
Q psy15667        277 ARY-SSKLQV  285 (286)
Q Consensus       277 ~~~-~~~L~V  285 (286)
                      ... .+.|.|
T Consensus        98 ~~s~~~~l~~  107 (117)
T 2v9t_A           98 AVSHDASLEV  107 (117)
T ss_dssp             EECCCEEEEE
T ss_pred             eEeeeEEEEh
Confidence            654 334443

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=99.13  E-value=3.1e-10  Score=80.31  Aligned_cols=78  Identities=22%  Similarity=0.394  Sum_probs=57.4

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC--CE----EcCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GF----ELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~----~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      .+...+..+.+.+|++|+|.|.+.+.  |.+.+.|+++  +.    .+..+.|+....  . .......|.|.+++.+|+
T Consensus         2 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~v~~~Ds   78 (111)
T 2ywz_A            2 WVDQTPRTITKETGESLTIKCVLKDHSCGLSSTTWYRTQLGSTNEKTISIGGRYDETV--D-KGSKSFSLRISDLRVEDS   78 (111)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCSBTTEEEEE--E-TTTTEEEEEECSCCGGGC
T ss_pred             eeEECCCcEEEccCCCEEEEeEECCCCCCCCEEEEEEeCCCCCceEeeEeCCCEEEEE--e-CCCCEEEEEECCCChhcC
Confidence            45667778899999999999999876  5789999985  22    233345554321  1 112234699999999999


Q ss_pred             eEEEEEEEc
Q psy15667         76 GEYACVAEN   84 (286)
Q Consensus        76 G~Y~C~a~n   84 (286)
                      |.|.|.+.|
T Consensus        79 G~Y~C~~~~   87 (111)
T 2ywz_A           79 GTYKCQADY   87 (111)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEc
Confidence            999999987

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.13  E-value=1.2e-10  Score=91.73  Aligned_cols=80  Identities=16%  Similarity=0.258  Sum_probs=61.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +........+..|+.+.|.|.+.|.|+|.|+|++++..+.....+...    ........|.|.++..+|+|.|+|.|.|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~~~~~~~~~~~~~~~----~~~~~~s~L~i~~~~~~d~g~YtC~a~N  196 (218)
T 4frw_A          121 SLNPGPALEEGQGLTLAASCTAEGSPAPSVTWDTEVKGTTSSRSFKHS----RSAAVTSEFHLVPSRSMNGQPLTCVVSH  196 (218)
T ss_dssp             EEEECSCEETTCCSEEEEEEEEEEBSCCEEEEEESSCCEEEEEEEECS----SSEEEEEEEEECCCGGGTTCEEEEEEEC
T ss_pred             eeeeeeeeeeeeccccceeeeccCCcCceEEEEECCcccccCceEecC----CcEEEEEEEEEeeCCHHhCeEEEEEEEe
Confidence            344455567889999999999999999999999998877544333221    1112234699999999999999999999


Q ss_pred             CCEE
Q psy15667         85 RAGT   88 (286)
Q Consensus        85 ~~g~   88 (286)
                      ..|.
T Consensus       197 ~~g~  200 (218)
T 4frw_A          197 PGLL  200 (218)
T ss_dssp             TTCS
T ss_pred             CCCC
Confidence            8763

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.11  E-value=3.3e-10  Score=87.95  Aligned_cols=79  Identities=27%  Similarity=0.450  Sum_probs=59.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+.+.|+|++..+....+..+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        19 v~~G~~v~l~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~   96 (197)
T 3lcy_A           19 TKLGEAAQLSCQIV-GRPLPDIKWYRFGKELIQSRKYKMSSD-GRTHTLTVMTEEQEDEGVYTCIATNEVGEVETSSKLL   96 (197)
T ss_dssp             EETTSEEEEEEEEE-EESCCEEEEEETTEEECCCSSEEEEES-SSEEEEEEECCSGGGCEEEEEEEECSSCEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEe-cCCCCEEEEEECCEECCCCccEEEEeC-CCEEEEEEecCCccCCEEEEEEEECCCCceeEEEEEE
Confidence            34556666666553 356678889999988876655554432 2345899999999999999999999999988888887


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        97 v   97 (197)
T 3lcy_A           97 L   97 (197)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.11  E-value=1.1e-10  Score=91.83  Aligned_cols=86  Identities=27%  Similarity=0.465  Sum_probs=60.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEE-eecCCCCeeEEeeCCE-EcCCCCeeEe----ceEEecccceeEEEEEcccccCCC
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCI-ASGNPTPDIGWTLDGF-ELPTNNRFVI----GQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~-~~g~p~p~v~W~~~~~-~l~~~~~~~~----~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      ||.+...+....+.+|++++|.|. +.+.|.|.+.|++++. .+..+.+...    .........  ..|.|.++..+|+
T Consensus       104 ~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~L~i~~~~~~d~  181 (212)
T 1f97_A          104 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKS--GDLIFDPVTAFDS  181 (212)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTT--CCEEESSCCGGGC
T ss_pred             CCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEeCCcccccccccccccccCceeEecCCC--ceEEEEecChhhC
Confidence            455554555667899999999999 7899999999999999 8765332100    000000111  2488999999999


Q ss_pred             eEEEEEEEcCCEEE
Q psy15667         76 GEYACVAENRAGTC   89 (286)
Q Consensus        76 G~Y~C~a~n~~g~~   89 (286)
                      |.|+|.|.|..|..
T Consensus       182 G~Y~C~a~n~~g~~  195 (212)
T 1f97_A          182 GEYYCQAQNGYGTA  195 (212)
T ss_dssp             EEEEEEEECSSSCC
T ss_pred             cEEEEEEccccCCc
Confidence            99999999987754

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.11  E-value=5.3e-10  Score=89.82  Aligned_cols=83  Identities=25%  Similarity=0.447  Sum_probs=61.8

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEee----CCEEcCCCCeeEec---eEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTL----DGFELPTNNRFVIG---QFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~----~~~~l~~~~~~~~~---~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+....+.+|+.+.|.|.+.|+|.|.+.|++    ++..+..+......   ............|.|.++..+|+|.|+|
T Consensus       120 ~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  199 (241)
T 3grw_A          120 LPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWISESVEADVRLRLANVSERDGGEYLC  199 (241)
T ss_dssp             TTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSSCTTTCCCEEEEEEEECSBSEEEEEEEECSCCGGGCEEEEE
T ss_pred             CCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCcccCCCCceeeeeeeEeeeeecCCceEEEECcCCcccCcEEEE
Confidence            3556678999999999999999999999999    88877654332110   0001111223469999999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus       200 ~a~N~~g~~~  209 (241)
T 3grw_A          200 RATNFIGVAE  209 (241)
T ss_dssp             EEECSSCEEE
T ss_pred             EEecCcceEE
Confidence            9999988764

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.10  E-value=2.8e-10  Score=97.05  Aligned_cols=79  Identities=16%  Similarity=0.249  Sum_probs=60.0

Q ss_pred             cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEe--cccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVS--GHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~--~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      .+.+|+.++|.|.+.|.|.|.|.|+++|..+.............  ........|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       257 ~~~~g~~v~l~C~~~g~P~p~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~  336 (347)
T 2ifg_A          257 TAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQAS  336 (347)
T ss_dssp             CCEESSSEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cCccCceEEEEEEeeecCCCcEEEEeCCEECCCCcceeeEEEeecCCCcccceEEEECCCCcccCceEEEEEecCCCcee
Confidence            45689999999999999999999999999998554432211000  0001134599999999999999999999999765


Q ss_pred             E
Q psy15667         91 I   91 (286)
Q Consensus        91 ~   91 (286)
                      .
T Consensus       337 ~  337 (347)
T 2ifg_A          337 A  337 (347)
T ss_dssp             E
T ss_pred             e
Confidence            4

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.10  E-value=8e-11  Score=104.76  Aligned_cols=77  Identities=27%  Similarity=0.520  Sum_probs=60.4

Q ss_pred             eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC---CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT---NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~---~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      ..+.++++.+|++++|.|.+.|.|.|.+.|++++..+..   ..++.+    ...+    .|.|.+++.+|+|.|+|.|.
T Consensus       390 ~~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~----~~~~----~L~i~~v~~~d~G~Y~C~a~  461 (477)
T 2id5_A          390 RKAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTV----FPDG----TLEVRYAQVQDNGTYLCIAA  461 (477)
T ss_dssp             CSCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEE----CTTS----CEEESSCCSTTCEEEEEEEE
T ss_pred             cccccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEe----CCCC----EEEEeeCChHHCEEEEEEEE
Confidence            345667899999999999999999999999999987753   233322    1122    38899999999999999999


Q ss_pred             cCCEEEEE
Q psy15667         84 NRAGTCEI   91 (286)
Q Consensus        84 n~~g~~~~   91 (286)
                      |..|....
T Consensus       462 N~~g~~~~  469 (477)
T 2id5_A          462 NAGGNDSM  469 (477)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCcEEE
Confidence            99997653

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=99.09  E-value=1.9e-10  Score=80.96  Aligned_cols=71  Identities=23%  Similarity=0.308  Sum_probs=51.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-----eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-----DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-----~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      +|.+...+. ..+.+|++|+|+|.+.+.|..     ++.|+|||..+..   .       ...   ..|.|.+++.+|+|
T Consensus         8 kP~l~~~p~-~~v~~G~~VtL~C~~~~~~~~~~~~~~~~w~k~g~~l~~---~-------~~~---~~l~i~~v~~~dsG   73 (108)
T 4hwn_A            8 APILRAVPS-AEPQAGSPMTLSCQTKLPLQRSAARLLFSFYKDGRIVQS---R-------GLS---SEFQIPTASEDHSG   73 (108)
T ss_dssp             CCEEEEESC-SSCBTTCCEEEEEEC---------CCEEEEEETTEEEEE---E-------ESC---CEEEESSCCGGGCE
T ss_pred             CCEEEecCC-CcCCCCCcEEEEEcccCCCCCcCcceEEEEEECCcCccC---C-------Ccc---cEEEeCccCcccCe
Confidence            577776664 468899999999999876654     4999999987741   0       011   24889999999999


Q ss_pred             EEEEEEEcCC
Q psy15667         77 EYACVAENRA   86 (286)
Q Consensus        77 ~Y~C~a~n~~   86 (286)
                      .|+|.+.+..
T Consensus        74 ~Y~C~~~~~~   83 (108)
T 4hwn_A           74 SYWCEAATED   83 (108)
T ss_dssp             EEEEEEECTT
T ss_pred             EEEEEEEeCC
Confidence            9999999864

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.09  E-value=1.7e-10  Score=89.98  Aligned_cols=80  Identities=18%  Similarity=0.171  Sum_probs=56.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+. ..+.+|++++|.|.+.+. .+.+.|+|+|..+..........    .......|.|.+++.+|+|.|+|.
T Consensus       100 ~p~~~~~~~-~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~~----~~~~~~~L~i~~v~~~d~G~Y~C~  173 (196)
T 3p2t_A          100 KPTLSALPS-PLVTSGKSVTLLCQSRSP-MDTFLLCKERAAHPLLCLRSEHG----AQQHQAEFPMSPVTSVHGGTYRCF  173 (196)
T ss_dssp             CCEEEEESC-SEECTTCCEEEEEEEEEE-EEEEEEEETTCCCGGGSEEEEEE----EEEEEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCc-ceecCCCeEEEEEecCCC-CCEEEEEeCCCcccceeeccccc----ccCcceEEEeCCCcccCCCeEEEE
Confidence            455554443 378899999999999885 46899999998775433211100    011123589999999999999999


Q ss_pred             EEcCCE
Q psy15667         82 AENRAG   87 (286)
Q Consensus        82 a~n~~g   87 (286)
                      |.|..+
T Consensus       174 a~n~~~  179 (196)
T 3p2t_A          174 SSHGFS  179 (196)
T ss_dssp             EECGGG
T ss_pred             EEcCCC
Confidence            999764

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.09  E-value=3.2e-10  Score=88.57  Aligned_cols=79  Identities=15%  Similarity=0.153  Sum_probs=52.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCe-eEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNR-FVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.+... ....+.+|++++|.|.+.+. .+.+.|+|+|..+..... +..    ...+.....|.|.+++.+|+|.|+|.
T Consensus       102 p~i~~~-~~~~v~~G~~v~L~C~~~~~-~~~v~W~k~g~~~~~~~~~~~~----~~~~~~~~~L~i~~v~~~D~G~Y~C~  175 (198)
T 1ugn_A          102 PTLSAQ-PSPVVNSGGNVTLQCDSQVA-FDGFILCKEGEDEHPQCLNSQP----HARGSSRAIFSVGPVSPSRRWWYRCY  175 (198)
T ss_dssp             CEEEEE-SCSEEETTCCEEEEEECSSC-CSEEEEEEC------CEEEC----------CCEEEEEECCCCTTSCEEEEEE
T ss_pred             CccccC-CccccCCCCcEEEEEecCCC-CcEEEEEECCCccCCccccccc----cCCCcceeEEEecccCcccCeEEEEE
Confidence            444433 34678999999999999998 789999999988754322 111    01121224699999999999999999


Q ss_pred             EEcCCE
Q psy15667         82 AENRAG   87 (286)
Q Consensus        82 a~n~~g   87 (286)
                      |.|..+
T Consensus       176 a~n~~~  181 (198)
T 1ugn_A          176 AYDSNS  181 (198)
T ss_dssp             EECTTS
T ss_pred             EEeCCC
Confidence            999753

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=99.09  E-value=4.7e-10  Score=79.05  Aligned_cols=78  Identities=23%  Similarity=0.242  Sum_probs=57.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--E---Ec-C--------CCCeeEeceEEecccceeEEEEEc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--F---EL-P--------TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~---~l-~--------~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +.+...+..+++.+|++++|.|.+.+.|.+.+.|+++.  .   .| .        ...|+....    .. ....|.|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~----~~-~~~~L~I~   78 (109)
T 2q20_A            4 IQMTQSPSSLSASVGDRVTITCQASQDISNYLNWYQQKPGKAPKLLIYDASNLETGVPSRFSGSG----SG-TDFTFTIS   78 (109)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE----ET-TEEEEEES
T ss_pred             ccEEeeCCEEEecCCCcEEEEEeeccCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEec----cC-CEEEEEEC
Confidence            45666777889999999999999998888899999863  1   11 0        134544321    11 12369999


Q ss_pred             ccccCCCeEEEEEEEcC
Q psy15667         69 HVTVEDGGEYACVAENR   85 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n~   85 (286)
                      +++.+|+|.|.|.+.+.
T Consensus        79 ~v~~~DsG~Y~C~~~~~   95 (109)
T 2q20_A           79 SLQPEDIATYYCQQYDN   95 (109)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             CCChhhCEEEEEEEeeC
Confidence            99999999999999874

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.09  E-value=2.2e-10  Score=87.73  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=55.1

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ........+.+|+.++|.|.+.+.|++ .+.|+|||..+...         . ..   ..|.|.+++.+|+|.|+|.|.|
T Consensus        92 ~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~---------~-~~---~~L~i~~v~~~d~G~Y~C~a~n  158 (175)
T 1fnl_A           92 LLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF---------H-HN---SDFHIPKATLKDSGSYFCRGLV  158 (175)
T ss_dssp             EEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE---------E-EC---CCEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCC---------C-CC---CEEEEcccChhhCeEEEEEEEc
Confidence            334455678899999999999988665 99999999887311         0 11   2488999999999999999999


Q ss_pred             CCEE
Q psy15667         85 RAGT   88 (286)
Q Consensus        85 ~~g~   88 (286)
                      ..+.
T Consensus       159 ~~~~  162 (175)
T 1fnl_A          159 GSKN  162 (175)
T ss_dssp             TTEE
T ss_pred             CCCC
Confidence            7664

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.09  E-value=3.9e-10  Score=83.74  Aligned_cols=91  Identities=21%  Similarity=0.371  Sum_probs=59.9

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+..|++++|.|.+.+.|.+.+.|.+....                              .+ .++++..+. ..++
T Consensus        46 ~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~------------------------------~i-~~~~~~~~~-~~r~   93 (145)
T 1z9m_A           46 SDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ------------------------------TL-YFGEKRALR-DNRI   93 (145)
T ss_dssp             CCEEEETTSCEEEEEECSCCTTCCEEEECTTCC------------------------------EE-EETTEECSC-CTTE
T ss_pred             ceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCc------------------------------EE-EECCceecc-cCCE
Confidence            346677777777777777776666666531100                              00 113333332 2333


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+.........|.|.++..+|+|.|+|.|.|. |.....+.|.|
T Consensus        94 ~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~n~-~~~~~~~~L~V  136 (145)
T 1z9m_A           94 QLVTSTPHELSISISNVALADEGEYTCSIFTM-PVRTAKSLVTV  136 (145)
T ss_dssp             EEEEECSSEEEEEECSCCGGGCEEEEEEECSS-SCEEEEEEEEE
T ss_pred             EEecCCCCeEEEEECCCChhhCEEEEEEEEcC-CCceEEEEEEE
Confidence            33332333568999999999999999999999 98888888887

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.09  E-value=1.9e-10  Score=88.90  Aligned_cols=74  Identities=20%  Similarity=0.241  Sum_probs=56.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+ +..+.+|++++|.|.+.+.| +.+.|+|+|..+....+...         ....|.|.+++.+|+|.|+|.
T Consensus        94 ~p~i~~~p-~~~v~~G~~v~l~C~~~~~~-~~~~w~k~g~~~~~~~~~~~---------~~~~L~i~~v~~~D~G~Y~C~  162 (184)
T 2gi7_A           94 KPSLSAQP-GPAVSSGGDVTLQCQTRYGF-DQFALYKEGDPAPYKNPERW---------YRASFPIITVTAAHSGTYRCY  162 (184)
T ss_dssp             CCEEEEEC-CCSSCCTTCEEEEEECSSCC-CEEEEEECCCCTTSCCCCEE---------EEESSSEEEETTCCSEEEEEE
T ss_pred             CCEEEeCC-CceecCCCcEEEEEEcCCCC-cEEEEEECCCcCcceecCCC---------ceEEEEEccCCccCCeEEEEE
Confidence            45666555 66888999999999987765 68999999988764322110         112478999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      |.|..
T Consensus       163 a~n~~  167 (184)
T 2gi7_A          163 SFSSR  167 (184)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            99964

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.08  E-value=1.9e-10  Score=101.38  Aligned_cols=82  Identities=24%  Similarity=0.490  Sum_probs=63.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCE-EcCCC---CeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF-ELPTN---NRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~-~l~~~---~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +|.|...+.+..+.+|++++|.|.+ +.|.|.+.|++++. .+...   .++.+    ...+    +|.|.+++.+|+|.
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~~----~L~I~~v~~~D~G~  411 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAV----LSDG----TLNFTNVTVQDTGM  411 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEE----CTTC----CEEESSCCSTTCEE
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEE----ccCC----eEEEccCChhhCEE
Confidence            6788888888899999999999999 67999999999554 33222   23322    1122    38899999999999


Q ss_pred             EEEEEEcCCEEEEEe
Q psy15667         78 YACVAENRAGTCEIT   92 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~   92 (286)
                      |+|.|.|..|..+.+
T Consensus       412 Y~C~a~N~~G~~~~~  426 (440)
T 3zyj_A          412 YTCMVSNSVGNTTAS  426 (440)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             EEEEEEcCCCcEEEE
Confidence            999999999976543

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.08  E-value=3.6e-10  Score=86.55  Aligned_cols=71  Identities=21%  Similarity=0.283  Sum_probs=55.8

Q ss_pred             eEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +........+.+|++++|.|.+. +.|.+.+.|++||..+....          .+   ..|.|.++..+|+|.|+|.|.
T Consensus        88 ~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~~---~~L~i~~v~~~d~G~Y~C~a~  154 (176)
T 1f2q_A           88 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY----------EN---HNISITNATVEDSGTYYCTGK  154 (176)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC----------CS---SEEEESSCCGGGCEEEEEEEE
T ss_pred             eeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeec----------CC---CeEEECCCCcccCEEEEEEEE
Confidence            34445567888999999999995 67778999999999884221          11   148899999999999999999


Q ss_pred             cCCEE
Q psy15667         84 NRAGT   88 (286)
Q Consensus        84 n~~g~   88 (286)
                      |..+.
T Consensus       155 n~~~~  159 (176)
T 1f2q_A          155 VWQLD  159 (176)
T ss_dssp             ETTEE
T ss_pred             eCCcc
Confidence            97544

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.08  E-value=1.4e-10  Score=92.49  Aligned_cols=80  Identities=28%  Similarity=0.502  Sum_probs=55.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. +.|.+.+.|+|+|..+....+............|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus        31 v~~G~~v~L~C~~~-~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~  109 (231)
T 3ojm_B           31 VPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD  109 (231)
T ss_dssp             EETTSCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EccCCCEEEEEecc-cCCCCeEEEEECCccccccccccceeeecCcceEEEecCCcccCEEEEEEEecccCcccccEEEE
Confidence            34555555555443 34566788999988876543322111112245799999999999999999999999888888887


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus       110 V  110 (231)
T 3ojm_B          110 V  110 (231)
T ss_dssp             E
T ss_pred             E
Confidence            6

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=99.07  E-value=8.6e-10  Score=77.54  Aligned_cols=77  Identities=26%  Similarity=0.279  Sum_probs=56.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--E---Ec-C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--F---EL-P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~---~l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...+.++++.+|++++|.|.+.+.|.+.+.|+|+.  .   .| .        ...|+...     .......|.|.+
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I~~   77 (108)
T 1qfw_M            3 ELTQSPKSMSMSVGERVTLSCKASETVDSFVSWYQQKPEQSPKLLIFGASNRFSGVPDRFTGS-----GSATDFTLTISS   77 (108)
T ss_dssp             CEEEECSCEECCTTCCEEEEEEESSCCCSCEEEEEECTTSCCEEEECSSSCBCTTCCTTEECC-----BCSSEEEEEESS
T ss_pred             cEEEeCCeEEEcCCCCEEEEeeeCCCCCcEEEEEEECCCCCCEEEEEEcCccCCCCCCcEEEE-----cCCCEEEEEECC
Confidence            3555677889999999999999998888899999853  1   11 1        12344331     111234699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+.+.
T Consensus        78 v~~~DsG~Y~C~~~~~   93 (108)
T 1qfw_M           78 VQAEDFADYHCGQTYN   93 (108)
T ss_dssp             CCTTCCSEEEEEECSS
T ss_pred             CChhhCEEEEEEEccC
Confidence            9999999999999874

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.07  E-value=2.2e-10  Score=90.40  Aligned_cols=86  Identities=16%  Similarity=0.266  Sum_probs=60.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+.++|.|.+.| .|.+ .+.|++||..+..+...........++.  ....|.|.++..+|+|.
T Consensus       112 ~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  191 (213)
T 3d9a_L          112 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  191 (213)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHHCCE
T ss_pred             CceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEEcCCCcCcceeeecCCCccCCCCCEEEEEEEEEeccccCCCCE
Confidence            677777666665668999999999987 6665 8999999999875511111000011111  12369999999999999


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|.|.|...
T Consensus       192 Y~C~a~n~~~  201 (213)
T 3d9a_L          192 YTCEATHKTS  201 (213)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEEccC
Confidence            9999999753

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.07  E-value=4.3e-10  Score=90.91  Aligned_cols=79  Identities=25%  Similarity=0.338  Sum_probs=59.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee--CCEEcC------------CCCeeEeceEEecccceeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL--DGFELP------------TNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~--~~~~l~------------~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ||.|...+..+.+.+|++++|.|.+.+.|.+.+.|+|  ++..+.            ...|+.+.     .......|.|
T Consensus       135 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~-----~~~~~~~L~I  209 (247)
T 2ghw_B          135 ETTLTQSPATLSLSPGERATLSCRASQSVRSNLAWYQQKPGQAPRPLIYDASTRATGIPDRFSGS-----GSGTDFTLTI  209 (247)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE-----CSSSEEEEEE
T ss_pred             ceEEEccCCEEEecCCCcEEEEEEeCCCccceEEEEEECCCCCcEEEEEEeccCCCccCCCEEEe-----cCCCeEEEEE
Confidence            3456666667789999999999999999999999999  554331            12344321     1122346999


Q ss_pred             cccccCCCeEEEEEEEcC
Q psy15667         68 SHVTVEDGGEYACVAENR   85 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+++.+|+|.|+|.|.|.
T Consensus       210 ~~v~~~D~G~Y~C~a~~~  227 (247)
T 2ghw_B          210 SRLEPEDFAVYYCQQRSN  227 (247)
T ss_dssp             CSCCGGGCEEEEEEECSS
T ss_pred             CcCCHHHCEEEEEEEccC
Confidence            999999999999999884

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.07  E-value=8e-11  Score=91.33  Aligned_cols=62  Identities=19%  Similarity=0.306  Sum_probs=51.2

Q ss_pred             cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEE
Q psy15667         13 TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+.+|+++.|.|.+   |.|.+.|+|||..|.....         ..   ..|.|.++..+|+|.|+|.|.|..|..
T Consensus       118 ~~~~G~~v~l~C~~---p~p~i~W~k~g~~i~~~~~---------~~---~~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          118 GSRGDGSVLLTCGL---TDKTIKWLKDGSIISPLNA---------TK---NTWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             CCSSSCEEEEECSS---SCSCEEEEETTEECCCSSC---------CS---SCCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             ecCCCCeEEEEeeC---CCCeEEEEECCEECcccCC---------Cc---ceEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            34599999999988   8899999999999864322         11   137899999999999999999998865

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.07  E-value=2.2e-10  Score=91.18  Aligned_cols=74  Identities=19%  Similarity=0.280  Sum_probs=56.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+ +..+.+|++++|.|.+.+.|.+.+.|+|||..+... +..     . ..  ...|.|.+++.+|+|.|+|.
T Consensus       106 ~P~i~~~p-~~~v~~G~~v~L~C~~~~~~~~~~~W~k~g~~~~~~-~~~-----~-~~--~~~L~I~~v~~~D~G~Y~C~  175 (218)
T 1uct_A          106 KPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-HQS-----G-EH--PANFSLGPVDLNVSGIYRCY  175 (218)
T ss_dssp             CCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-EEE-----C-SS--SEEEECCSCCGGGCEEEEEE
T ss_pred             CCEEEeCC-CCccCCCCCEEEEEeCCCCCCCEEEEEECCCccccc-ccC-----C-Cc--cCEEEEccCCcccCEEEEEE
Confidence            45565444 668899999999998778888999999999877542 110     0 11  13589999999999999999


Q ss_pred             EEcC
Q psy15667         82 AENR   85 (286)
Q Consensus        82 a~n~   85 (286)
                      |.|.
T Consensus       176 a~n~  179 (218)
T 1uct_A          176 GWYN  179 (218)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            9985

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=99.07  E-value=5.3e-10  Score=78.63  Aligned_cols=78  Identities=18%  Similarity=0.346  Sum_probs=56.7

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--E----EcCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--F----ELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~----~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      .+...+..+.+.+|++++|.|.+.+.+  .+.+.|+++.  .    .+..+.|+.+..  . .......|+|.+++.+|+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~~~~~Ds   78 (108)
T 2coq_A            2 RVDQTPRIATKETGESLTINCVLRDTACALDSTNWYRTKLGSTKEQTISIGGRYSETV--D-EGSNSASLTIRDLRVEDS   78 (108)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECCSSEEEEEEEEEEEETTCCCEEECCCBTTEEEEE--E-TTTTEEEEEECSCCGGGC
T ss_pred             ceEeCCceEEEcCCCCEEEEeEeCCCcCCCCEEEEEEcCCCCCcEEEEEeCCceEEEE--c-CCCCEEEEEECCCCcccC
Confidence            355667788999999999999998763  5789999863  2    233345664321  1 112234699999999999


Q ss_pred             eEEEEEEEc
Q psy15667         76 GEYACVAEN   84 (286)
Q Consensus        76 G~Y~C~a~n   84 (286)
                      |.|.|.+.+
T Consensus        79 G~Y~C~~~~   87 (108)
T 2coq_A           79 GTYKCKAYR   87 (108)
T ss_dssp             EEEEEEEEE
T ss_pred             EEEEEEEEe
Confidence            999999987

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.06  E-value=2.2e-10  Score=90.32  Aligned_cols=86  Identities=15%  Similarity=0.261  Sum_probs=59.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+.++|.|.+.| .|.+ .|.|+|||..+..+............+.  ....|.|.++..+|+|.
T Consensus       111 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  190 (210)
T 1lk3_L          111 APTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWKIDGTERRDGVLDSVTDQDSKDSTYSMSSTLSLTKADYESHNL  190 (210)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEECCTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEEeCCccCCCCceEccCCccCCCCCEEEEEEEEEChHHhccCCc
Confidence            577776666655668999999999997 4554 8999999999875411110000011111  12358999999999999


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|.|.|...
T Consensus       191 Y~C~a~n~~~  200 (210)
T 1lk3_L          191 YTCEVVHKTS  200 (210)
T ss_dssp             EEEEEECTTC
T ss_pred             EEEEEEecCC
Confidence            9999999653

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.06  E-value=1e-09  Score=86.57  Aligned_cols=88  Identities=13%  Similarity=0.198  Sum_probs=62.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+.++|.|.+.|.| ++ .|.|++||..+..+..... .....++.  ....|.|..+..+|+|.
T Consensus       115 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~d~g~  193 (212)
T 1q0x_L          115 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ-PSKQSNNKYMASSYLTLTARAWERHSS  193 (212)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC-CEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEEECCEeCCCCeecCC-ceeCCCCCEEEEEEEEEcHHHccCCCc
Confidence            67777666666666899999999999854 43 8999999999875422110 01111111  22358899999999999


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|......
T Consensus       194 Y~C~a~n~~~~~~  206 (212)
T 1q0x_L          194 YSCQVTHEGHSSN  206 (212)
T ss_dssp             EEEEEEETTEEEE
T ss_pred             EEEEEEeCCccee
Confidence            9999999876543

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=99.06  E-value=4.6e-10  Score=82.11  Aligned_cols=77  Identities=18%  Similarity=0.320  Sum_probs=58.5

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-CCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      .+...+..+.+.+|++++|.|.+.+.  +.+.|+|+  +..   + ....|+.+..    .+. ...|.|.+++.+|+|.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~--~~v~W~r~~~g~~~~~l~~~~~r~~~~~----~~~-~~~L~I~~~~~~DsG~   91 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS--GALTWFRKRGSQQPQELVSEEGRIVQTQ----NGS-VYTLTIQNIQYEDNGI   91 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS--SCEEEEEECTTSCCEECCCTTTTEEEEE----ETT-EEEEEECSCCGGGCEE
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC--CEEEEEEeCCCCCCEEEEEeCCCEEEEc----CCC-EEEEEECCCChHHCEE
Confidence            45667788899999999999999987  88999987  322   2 2356665421    222 3469999999999999


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |.|.+.|..|
T Consensus        92 Y~C~a~n~~g  101 (133)
T 3khq_A           92 YFCKQKCDSA  101 (133)
T ss_dssp             EEEEESSCC-
T ss_pred             EEEEEEeCCC
Confidence            9999998764

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.06  E-value=2.8e-10  Score=87.78  Aligned_cols=68  Identities=15%  Similarity=0.282  Sum_probs=55.8

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGT   88 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~   88 (286)
                      +.+..+.+|++++|.|.+.+.|.|.+.|++++..+..            ..   ..|.|.+++.+|+|.|+|.|.|..+.
T Consensus       104 ~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~~~~~~~~------------~~---~~L~i~~v~~~d~G~Y~C~a~n~~~~  168 (184)
T 2ny1_B          104 NSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ------------GG---KTLSVSQLELQDSGTWTCTVLQNQKK  168 (184)
T ss_dssp             SSCSEEETTCCEEEEEECCTTCCCEEEEECTTSCEEE------------ES---SEEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCceeecCCCEEEEEEcCCCCCCEEEEEeCCCcccc------------Cc---eEEEEecCCcCCCeEEEEEEEECCce
Confidence            4556789999999999999999999999998755410            11   14889999999999999999998887


Q ss_pred             EEE
Q psy15667         89 CEI   91 (286)
Q Consensus        89 ~~~   91 (286)
                      ...
T Consensus       169 ~~~  171 (184)
T 2ny1_B          169 VEF  171 (184)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            653

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.06  E-value=2.2e-10  Score=90.04  Aligned_cols=81  Identities=22%  Similarity=0.372  Sum_probs=59.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEe-ecCCCCeeEEeeCCE--EcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGF--ELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~--~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.+...+.+..+.+|++++|.|.+ .|.|.|.+.|++++.  .+.....+.      ..++   .|.|.+++.+|+|.|
T Consensus       121 ~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~------~~~~---~L~i~~~~~~d~G~Y  191 (214)
T 3jz7_A          121 KPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAE------MTSP---VISVKNASSEYSGTY  191 (214)
T ss_dssp             CCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEECSTTCCCCGGGGGG------TTSS---EEEECSCCGGGCEEE
T ss_pred             CCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEECCCCCccCccceec------cCCC---EEEEecCCHHHCEEE
Confidence            4455445555668899999999999 899999999999543  333221111      1111   489999999999999


Q ss_pred             EEEEEcCCEEEEE
Q psy15667         79 ACVAENRAGTCEI   91 (286)
Q Consensus        79 ~C~a~n~~g~~~~   91 (286)
                      +|.|.|..|....
T Consensus       192 ~C~a~N~~g~~~~  204 (214)
T 3jz7_A          192 SCTVQNRVGSDQC  204 (214)
T ss_dssp             EEEEECSSCEEEE
T ss_pred             EEEEEcCCCcEEE
Confidence            9999999887643

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=99.04  E-value=1.7e-11  Score=81.05  Aligned_cols=55  Identities=22%  Similarity=0.541  Sum_probs=42.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEccc-CCCCCeEEEEEEEe
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSV-SAAHSGEYTCVASN  272 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v-~~~d~G~Y~C~a~N  272 (286)
                      +..|+.+.|.|.+. |.|  .|+|+|+|..+...          .+..|.|.++ ..+|+|.|+|.|.+
T Consensus        11 ~~~G~~v~L~C~~~-g~P--~i~W~kdg~~l~~~----------~~~~L~I~~v~~~~DsG~Y~C~A~t   66 (82)
T 3r08_E           11 SISGTSVELTCPLD-SDE--NLKWEKNGQELPQK----------HDKHLVLQDFSEVEDSGYYVCYTPA   66 (82)
T ss_dssp             EEETTEEEEECSSC-CCS--SCEEEETTEECTTC----------CSSCCBCCSCCTTTTCSCEEEECSS
T ss_pred             EEcCCeEEEEEECC-CCC--cEEEEECCEECcCC----------CCCEEEECccCccCcCEEEEEEEcc
Confidence            34577777788764 455  39999999988643          1457899996 78999999999976

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=99.04  E-value=1e-09  Score=77.03  Aligned_cols=77  Identities=25%  Similarity=0.393  Sum_probs=56.7

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EE---c-C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FE---L-P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...+..+++.+|++++|.|.+.+.|.+.+.|+|+.  ..   | .        ...|+....    .+ ....|.|.+
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~----~~-~~~~L~I~~   77 (107)
T 1i8k_A            3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSG----TG-TDFVFTIEN   77 (107)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ET-TEEEEEESS
T ss_pred             ceEeCCCeEEecCCCCEEEEEEECCCCCCcEEEEEECCCCCCEEEEEecCccCCCCCCCEEEEc----cC-CEEEEEECC
Confidence            4556677889999999999999998888899999853  21   1 1        123444321    11 223699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+.+.
T Consensus        78 v~~~DsG~Y~C~~~~~   93 (107)
T 1i8k_A           78 TLSEDVGDYYCLQSFN   93 (107)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCHHHCEEEEEEEeeC
Confidence            9999999999999874

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.04  E-value=4.1e-10  Score=89.11  Aligned_cols=88  Identities=15%  Similarity=0.243  Sum_probs=60.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+..|+.++|.|.+.| .|.+ .+.|++||..|..+.......  ...+.  ....|.|.....+|+|.
T Consensus       121 ~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~--~~~~~~~~~s~l~i~~~~~~d~g~  198 (218)
T 3s96_B          121 TPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVAWKANGTPITQGVDTSNPT--KEGNKFMASSFLHLTSDQWRSHNS  198 (218)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEEC----------------CEEEEEEEEEEHHHHHTCSC
T ss_pred             CceEEeeCCCcccccCCcEEEEEEECcccCCCeEEEEEECCEECcCceecCccc--ccCCcEEEEEEEEEeHHHccCCCe
Confidence            577777666677778899999999998 5777 899999999986522111000  00111  12348899999999999


Q ss_pred             EEEEEEcCCEEEEE
Q psy15667         78 YACVAENRAGTCEI   91 (286)
Q Consensus        78 Y~C~a~n~~g~~~~   91 (286)
                      |+|.|.|..+..+.
T Consensus       199 Y~C~a~n~~~~~~~  212 (218)
T 3s96_B          199 FTCQVTHEGDTVEK  212 (218)
T ss_dssp             EEEEEEETTEEEEE
T ss_pred             EEEEEEeCCCcccc
Confidence            99999999887654

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.04  E-value=2.1e-10  Score=102.08  Aligned_cols=78  Identities=27%  Similarity=0.506  Sum_probs=62.1

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC---CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR---FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~---~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+...   .++.+.    ..++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus       396 ~v~~G~~v~l~C~~~-g~P~p~i~W~~~~~~~~~~~~~~~~~~~----~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  470 (477)
T 2id5_A          396 FVDEGHTVQFVCRAD-GDPPPAILWLSPRKHLVSAKSNGRLTVF----PDGTLEVRYAQVQDNGTYLCIAANAGGNDSMP  470 (477)
T ss_dssp             EEETTCCEEECCCEE-EESCCEEEEECTTSCBC-------CEEC----TTSCEEESSCCSTTCEEEEEEEEETTEEEEEE
T ss_pred             EEeCCCeEEEEEecc-ccCCCEEEEEECCccccccCCCceEEeC----CCCEEEEeeCChHHCEEEEEEEEeCCCcEEEE
Confidence            467899999999875 7889999999999876532   122211    13579999999999999999999999999999


Q ss_pred             EEEEEC
Q psy15667        281 SKLQVK  286 (286)
Q Consensus       281 ~~L~V~  286 (286)
                      +.|.|+
T Consensus       471 ~~l~V~  476 (477)
T 2id5_A          471 AHLHVR  476 (477)
T ss_dssp             EEEEEE
T ss_pred             EEEEEe
Confidence            999884

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=99.04  E-value=9.6e-10  Score=78.79  Aligned_cols=78  Identities=23%  Similarity=0.296  Sum_probs=57.0

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EE---c-C--------CCCeeEeceEEecccceeEEEEEc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FE---L-P--------TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +.+...+..+++.+|++++|.|.+.+.|.+.+.|+++.  ..   | .        ...|+....    .. ....|.|.
T Consensus         4 ~~v~q~p~~v~v~~G~~vtL~C~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~----~~-~~~~L~I~   78 (119)
T 2e27_L            4 IQMTQSPSSLSASLGGKVTITCKANQDIKKKIAWYQHKPGKGPRLLIYYTSTLKSGISSRFSGSG----SG-RDYSFSIS   78 (119)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE----ET-TEEEEEEC
T ss_pred             ceeEecCCeEEEeCCCCEEEEEEeCCCCCceEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc----cC-CEEEEEEC
Confidence            34556677788999999999999999888899999853  11   1 1        124444321    11 12369999


Q ss_pred             ccccCCCeEEEEEEEcC
Q psy15667         69 HVTVEDGGEYACVAENR   85 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n~   85 (286)
                      +++.+|+|.|.|.+.|.
T Consensus        79 ~v~~~DsG~Y~C~~~~~   95 (119)
T 2e27_L           79 NLEPEDAATYYCLQYDN   95 (119)
T ss_dssp             SCCGGGCEEEEEEECGG
T ss_pred             CCChHHCEEEEEEEccC
Confidence            99999999999999874

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.03  E-value=4.8e-10  Score=88.57  Aligned_cols=90  Identities=18%  Similarity=0.221  Sum_probs=62.4

Q ss_pred             EEEEcccccCCCeEEEEEEEcCCEEEEEe---------------------------------cCCCCCeeEEEeeCCccC
Q psy15667         64 HVNISHVTVEDGGEYACVAENRAGTCEIT---------------------------------PYDSGPYLIAWFKDGRQI  110 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~~g~~~~~---------------------------------~~~~~~~~~~W~~~g~~l  110 (286)
                      +|.|.+++.+|+|.|+|.|.|..+.....                                 ....+++.+.|++++..+
T Consensus        84 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~  163 (225)
T 4fmk_A           84 TLAFRGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGE  163 (225)
T ss_dssp             CEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCE
T ss_pred             EEEEccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccc
Confidence            48999999999999999998865532110                                 001235678999987654


Q ss_pred             cC-----CC------CcceEEEccCCCCCCeeEEEEEEcCCccee-eeeeEEEEc
Q psy15667        111 PG-----RT------SSTSLVINPVGREDRGIYQCIARRSDGDVA-QGSAELQLG  153 (286)
Q Consensus       111 ~~-----~~------~~~~l~i~~v~~~d~G~Y~C~a~~~~g~~~-~~~~~l~v~  153 (286)
                      ..     ..      ..+.|.|.++..+|+|.|+|.|.|..+... ...+.|+|+
T Consensus       164 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~  218 (225)
T 4fmk_A          164 AKDTQEPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVR  218 (225)
T ss_dssp             EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBT
T ss_pred             cCCcceEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEE
Confidence            21     01      124699999999999999999999877542 234455553

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=99.02  E-value=1.8e-09  Score=78.00  Aligned_cols=80  Identities=24%  Similarity=0.416  Sum_probs=58.3

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC--CE----EcCCCCeeEeceEEecccceeEEEEEcccccCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GF----ELPTNNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~----~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +.+...+....+.+|++++|.|...+.  +.+.+.|++.  +.    .+..+.|+....   .......+|+|.+++.+|
T Consensus         1 ~~V~Q~p~~v~v~~G~svtL~C~~s~~~~~~~~v~Wyrq~~g~~~~~li~~~~R~~~~~---~~~~~~~sL~I~~v~~~D   77 (126)
T 3moq_A            1 AWVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETV---NKGSKSFSLRISDLRVED   77 (126)
T ss_dssp             CEEEEECSEEEEETTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEE---ETTTTEEEEEECSCCGGG
T ss_pred             CceEECCceEEEeCCCCEEEEEEeecCccCCceEEEEEeCCCCCceEEEEeCCcEEEEE---eCCCCEEEEEECcCChHh
Confidence            356677788899999999999999875  5678999984  32    233445554321   112223469999999999


Q ss_pred             CeEEEEEEEcC
Q psy15667         75 GGEYACVAENR   85 (286)
Q Consensus        75 ~G~Y~C~a~n~   85 (286)
                      +|.|.|.+.+.
T Consensus        78 sG~Y~C~~~~~   88 (126)
T 3moq_A           78 SGTYKCQAFYV   88 (126)
T ss_dssp             CEEEEEEEEEE
T ss_pred             CEEEEEEEEEc
Confidence            99999998774

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=99.02  E-value=7.2e-10  Score=79.55  Aligned_cols=77  Identities=25%  Similarity=0.313  Sum_probs=56.8

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EE---c-C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FE---L-P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...+..+++.+|++++|.|.+.+.|.+.+.|+|+.  ..   | .        ...|+.+..    .. ...+|.|.+
T Consensus         3 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~g~~~~~li~~~~~~~~~~~~R~~~~~----~~-~~~~L~I~~   77 (120)
T 1mqk_L            3 ELTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSG----SG-TQFSLKINS   77 (120)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ET-TEEEEEESS
T ss_pred             ceEecCCeEEEcCCCcEEEEEEeCCCCCceEEEEEECCCCCCEEEEEeCCcCCCCCCceEEEec----cC-CEEEEEECC
Confidence            3556677889999999999999999888899999853  21   1 1        134554321    11 123699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+.|.
T Consensus        78 v~~~DsG~Y~C~~~~~   93 (120)
T 1mqk_L           78 LLPEDFGSYYCQHHYG   93 (120)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             CCHHHCEEEEEEEEeC
Confidence            9999999999999874

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.02  E-value=5.6e-10  Score=84.76  Aligned_cols=70  Identities=14%  Similarity=0.269  Sum_probs=55.3

Q ss_pred             eccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          7 YSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .......+.+|++++|.|.+. +.|.+.+.|++||..+....          ..   ..|.|.+++.+|+|.|+|.|.|.
T Consensus        90 ~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~----------~~---~~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A           90 LQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSH----------LD---PTFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             EECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEES----------SC---CEEEESSCCGGGCEEEEEEEEET
T ss_pred             ecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccC----------CC---CeEEEEeccccCCEEEEEEEEeC
Confidence            344566788999999999995 56779999999998764211          11   14889999999999999999999


Q ss_pred             CEEE
Q psy15667         86 AGTC   89 (286)
Q Consensus        86 ~g~~   89 (286)
                      .|..
T Consensus       157 ~g~~  160 (170)
T 3ry4_A          157 YTLF  160 (170)
T ss_dssp             TEEE
T ss_pred             cCcc
Confidence            8853

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.02  E-value=8.4e-10  Score=87.33  Aligned_cols=85  Identities=16%  Similarity=0.253  Sum_probs=58.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+..........+|+.++|.|.+.| .|.+ .|.|++||..+..+...........++.  ....|.|..+..+|+|.
T Consensus       114 ~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~  193 (216)
T 2xzc_L          114 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV  193 (216)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEECCeecCCCeeEecCcccCCCCCEEEEEEEEECHHHhCCCCc
Confidence            566666554444456999999999998 5655 8999999998865411110000011111  12358999999999999


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|.|.|..
T Consensus       194 Y~C~a~n~~  202 (216)
T 2xzc_L          194 YACEVTHQG  202 (216)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEcCC
Confidence            999999965

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.02  E-value=3.6e-10  Score=99.59  Aligned_cols=80  Identities=21%  Similarity=0.451  Sum_probs=61.3

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCC-CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPR-FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~-~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      ..+.+|+.+.|.|.+  +.|+|.+.|++++..+ ... ....+...  ..++|.|.+++.+|+|.|+|.|.|.+|....+
T Consensus       351 ~~v~~G~~v~L~C~~--~~p~p~i~W~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~  426 (440)
T 3zyj_A          351 LNVTEGMAAELKCRA--STSLTSVSWITPNGTVMTHGAYKVRIAVL--SDGTLNFTNVTVQDTGMYTCMVSNSVGNTTAS  426 (440)
T ss_dssp             EEECTTSCCEECCEE--SSTTSEEEEECTTSCEEESSSCCSSEEEC--TTCCEEESSCCSTTCEEEEEEEECSSCEEEEE
T ss_pred             eeeccCceEEEEeec--CCCCCceEEEeCCCceeeccCCCceEEEc--cCCeEEEccCChhhCEEEEEEEEcCCCcEEEE
Confidence            347899999999998  4578999999955433 222 11122221  24579999999999999999999999999999


Q ss_pred             EEEEEC
Q psy15667        281 SKLQVK  286 (286)
Q Consensus       281 ~~L~V~  286 (286)
                      +.+.|+
T Consensus       427 ~~~~v~  432 (440)
T 3zyj_A          427 ATLNVT  432 (440)
T ss_dssp             EEEEEC
T ss_pred             EEEEEe
Confidence            999884

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.01  E-value=7.4e-11  Score=93.16  Aligned_cols=85  Identities=12%  Similarity=0.187  Sum_probs=60.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEeccc-ceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHG-DVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~-~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.+........+.+|+.++|.|.+.|. |+ +.+.|++||..+..+..... ......+ .....|.|.++..+|+|.|
T Consensus       113 ~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d~G~Y  191 (212)
T 1nfd_E          113 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK-PSKQGQNYMTSSYLSLTADQWKSHNRV  191 (212)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC-CBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             CCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEECCeEcCCCeecCC-ceecCCCceEEEEEEEchhhcCCCCeE
Confidence            5667665666666789999999999987 55 79999999999865422110 0000011 0123488999999999999


Q ss_pred             EEEEEcCCE
Q psy15667         79 ACVAENRAG   87 (286)
Q Consensus        79 ~C~a~n~~g   87 (286)
                      +|.|.|..+
T Consensus       192 ~C~a~n~~~  200 (212)
T 1nfd_E          192 SCQVTHEGE  200 (212)
T ss_dssp             EEEEECTTT
T ss_pred             EEEEEeCCc
Confidence            999999754

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.00  E-value=4.2e-10  Score=86.05  Aligned_cols=77  Identities=13%  Similarity=0.201  Sum_probs=55.5

Q ss_pred             EEEEcccccCCCeEEEEEEEcCCEEEE--E----------------------ecCCCCCeeEEEeeCCccCcCCCCcceE
Q psy15667         64 HVNISHVTVEDGGEYACVAENRAGTCE--I----------------------TPYDSGPYLIAWFKDGRQIPGRTSSTSL  119 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~~g~~~--~----------------------~~~~~~~~~~~W~~~g~~l~~~~~~~~l  119 (286)
                      +|.|.+++.+|+|.|+|.+.|..|...  +                      .....+++.+.|++||..+... ....|
T Consensus        61 sL~I~~v~~~DsG~Y~C~~~n~~~~~~~~L~V~~~~~~p~i~~~~~~~~L~C~~~~~p~p~i~W~~~~~~l~~~-~~~~l  139 (171)
T 1ccz_A           61 SLTIYNLTSSDEDEYEMESPNITDTMKFFLYVLEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRSL-RQKTM  139 (171)
T ss_dssp             CEEECSCCGGGCEEEEEECTTCCSCEEEEEEEECCCCCCEEEEETTTTEEEEECSSCSSCEEEEEETTEEEEEE-SSSEE
T ss_pred             eEEECCCChhhCceEEEEEeCCCCcEEEEEEEECcCCCCEEEEecCCcEEEEEeCCCCCcEEEEEECCEECcCC-cceEE
Confidence            489999999999999999987655221  1                      1112245789999999987532 12334


Q ss_pred             EEccCCCCCCeeEEEEEEcCCcce
Q psy15667        120 VINPVGREDRGIYQCIARRSDGDV  143 (286)
Q Consensus       120 ~i~~v~~~d~G~Y~C~a~~~~g~~  143 (286)
                      .+.  ...|+|.|+|.|.|..+..
T Consensus       140 ~~~--~~~~~g~Y~C~a~N~~~~~  161 (171)
T 1ccz_A          140 SYQ--WTNLRAPFKCKAVNRVSQE  161 (171)
T ss_dssp             EEE--CSCCSSCEEEEEEETTEEE
T ss_pred             EEe--ccCCCceEEEEEEcccCcc
Confidence            443  4789999999999998764

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.00  E-value=8.7e-10  Score=86.85  Aligned_cols=90  Identities=14%  Similarity=0.191  Sum_probs=64.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+...+.+..+.+|+.++|.|.+.|.  |.+.+.|++||..|..+..... ......+.  ....|.|.++..+|+|.
T Consensus       111 ~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~g~  189 (211)
T 3tv3_L          111 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVETTT-PSKQSNNKYAASSYLSLTPEQWKSHRS  189 (211)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC-CEECTTSSEEEEEEEEECHHHHHHSSC
T ss_pred             CCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEEECCeecCCCcccCC-ceECCCCCEEEEEEEEEcHHHhCCCCe
Confidence            6778777777777789999999999985  4589999999998864211100 00011111  12458899999999999


Q ss_pred             EEEEEEcCCEEEEEe
Q psy15667         78 YACVAENRAGTCEIT   92 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~   92 (286)
                      |+|.|.|..+....+
T Consensus       190 Y~C~v~~~~~~~~~~  204 (211)
T 3tv3_L          190 YSCQVTHEGSTVEKT  204 (211)
T ss_dssp             EEEEEEETTEEEEEE
T ss_pred             EEEEEEECCCCEEee
Confidence            999999998776543

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.00  E-value=4.8e-10  Score=96.23  Aligned_cols=76  Identities=21%  Similarity=0.262  Sum_probs=61.7

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC----CceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR  278 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~  278 (286)
                      ..+.+|+.+.|.|.+. | |+|.+.|++++..+....    ++.+     ..++|.|.+++.+|+|.|+|.|.|..|..+
T Consensus       256 v~v~~G~~~~l~C~~~-g-p~p~i~W~~~~~~~~~~~~~~~r~~~-----~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~  328 (361)
T 2xot_A          256 WEAHLGDTLTIRCDTK-Q-QGMTKVWVSPSNEQVLSQGSNGSVSV-----RNGDLFFKKVQVEDGGVYTCYAMGETFNET  328 (361)
T ss_dssp             CEEETTCCEEECCCCS-S-TTCEEEEECTTSCBCCSCCSSSSEEE-----ETTEEEESSCCTTSCEEEEEEEECSSCEEE
T ss_pred             ceecCCCeEEEEeEee-C-CCCeEEEEeCCCeeEeecccCCceEe-----ecCeEEEeecCcccCEEEEEEEecCCCccE
Confidence            3477899999999985 5 888999999776543221    2332     145799999999999999999999999999


Q ss_pred             eEEEEEE
Q psy15667        279 YSSKLQV  285 (286)
Q Consensus       279 ~~~~L~V  285 (286)
                      .++.|.|
T Consensus       329 ~~~~l~V  335 (361)
T 2xot_A          329 LSVELKV  335 (361)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9999987

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.00  E-value=6.2e-10  Score=87.61  Aligned_cols=66  Identities=18%  Similarity=0.271  Sum_probs=52.1

Q ss_pred             cccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .....+.+|++++|.|.+.++ |.+.+.|++||..+....          ..   ..|.|.+++.+|+|.|+|.|.|..+
T Consensus        95 ~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~----------~~---~~L~i~~v~~~D~G~Y~C~a~n~~~  161 (204)
T 3sgj_C           95 APRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFH----------HN---SDFYIPKATLKDSGSYFCRGLVGSK  161 (204)
T ss_dssp             CSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEE----------EC---CCEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeeccc----------CC---ceEEECcCCcccCEEEEEEEEeCCC
Confidence            344778899999999999765 668999999998863210          11   1488999999999999999999544

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=99.00  E-value=3.6e-10  Score=99.93  Aligned_cols=81  Identities=27%  Similarity=0.534  Sum_probs=63.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC-EEcCCC---CeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG-FELPTN---NRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~-~~l~~~---~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +|.|...+.+..+.+|++++|.|.+.  |.|.|.|++++ ..+...   .++.+    ...+    +|.|.+++.+|+|.
T Consensus       352 ~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i~W~~~~~~~~~~~~~~~~~~~----~~~g----~L~i~~v~~~D~G~  421 (452)
T 3zyi_A          352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISV----LNDG----TLNFSHVLLSDTGV  421 (452)
T ss_dssp             CCCCSBCCCCEECCTTSCCEECCBCC--TTSEEEEECTTSCEECSSCCCSSCEE----CTTS----CEECSSCCTTCCEE
T ss_pred             CcccccccccccccCCCEEEEEEeCC--CCCcEEEEeCCCcEeccCCCCCCEEE----CCCC----eEEEeecCHHHCEE
Confidence            67788888888999999999999988  99999999954 444322   23322    1122    38899999999999


Q ss_pred             EEEEEEcCCEEEEEe
Q psy15667         78 YACVAENRAGTCEIT   92 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~   92 (286)
                      |+|.|.|..|..+.+
T Consensus       422 Y~C~a~N~~G~~~~~  436 (452)
T 3zyi_A          422 YTCMVTNVAGNSNAS  436 (452)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             EEEEEEcCCCcEEEE
Confidence            999999999986543

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.00  E-value=3.9e-10  Score=87.46  Aligned_cols=74  Identities=19%  Similarity=0.242  Sum_probs=54.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+ +..+.+|++++|.|.+.+. .+.+.|+|||..+...  ..     .  ......|.|.+++.+|+|.|+|.
T Consensus        99 ~p~i~~~p-~~~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~--~~-----~--~~~~~~L~I~~v~~~d~G~Y~C~  167 (188)
T 1oll_A           99 TPTLSVHP-GPEVISGEKVTFYCRLDTA-TSMFLLLKEGRSSHVQ--RG-----Y--GKVQAEFPLGPVTTAHRGTYRCF  167 (188)
T ss_dssp             CCEEEEES-CSEEETTCEEEEEEECSSS-CSEEEEEEESSSCEEE--EE-----E--CSSEEEEEEEECCGGGCEEEEEE
T ss_pred             CCeEEECC-CCccccCCEEEEEEEcCCC-CCEEEEEECCcccccc--cc-----C--CCceeEEEECCCCcCCCcEEEEE
Confidence            46665444 5678999999999998764 5789999998766431  10     0  11123589999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      |.|..
T Consensus       168 a~n~~  172 (188)
T 1oll_A          168 GSYNN  172 (188)
T ss_dssp             CEEET
T ss_pred             EEcCC
Confidence            98854

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=98.99  E-value=6e-09  Score=94.39  Aligned_cols=40  Identities=13%  Similarity=0.300  Sum_probs=29.6

Q ss_pred             eEecccccc-ccCCCcEEEEEEeecCCC----CeeEEeeCCEEcC
Q psy15667          5 LTYSFIEQT-LQPGPAVSLKCIASGNPT----PDIGWTLDGFELP   44 (286)
Q Consensus         5 ~~~~~~~~~-~~~G~~~~l~C~~~g~p~----p~v~W~~~~~~l~   44 (286)
                      |.+.+.... +..+++..|.|.+.+.++    .+|+|+++++.+.
T Consensus       345 fl~~~~~~~~~~~~~~~~l~C~~~~~~p~~~~i~v~W~~~~~~~~  389 (551)
T 1ntl_A          345 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVH  389 (551)
T ss_pred             EEcCCCcccceeeccCcceEEEEEecccCCCceEEEEEECCcccc
Confidence            444444444 678899999999998755    4799999987653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=98.99  E-value=1.6e-09  Score=83.56  Aligned_cols=124  Identities=12%  Similarity=0.203  Sum_probs=83.3

Q ss_pred             ccccccCCCcEEEEEEeec-CCCCeeEEeeC-CEEcC---CC-----------CeeEeceEEecccceeEEEEEcccccC
Q psy15667         10 IEQTLQPGPAVSLKCIASG-NPTPDIGWTLD-GFELP---TN-----------NRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~-~~~l~---~~-----------~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      ..+.+.+|++++|.|.+.+ .+.+.|.|+|+ +..+.   .+           .|+.+.     .++  .+|.|.+++.+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~-----~~~--~sL~I~~v~~~   79 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD-----KTN--GALRIYNVSKE   79 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC-----TTT--CCEEECSCCGG
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe-----CCC--ccEEEcCCCHH
Confidence            3467899999999998754 34789999994 33221   11           222210     111  24899999999


Q ss_pred             CCeEEEEEEEcCCE-E--EEE----------------------ecCCCCCeeEEEeeCCccCcCCCCcceEEEccCCCCC
Q psy15667         74 DGGEYACVAENRAG-T--CEI----------------------TPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGRED  128 (286)
Q Consensus        74 D~G~Y~C~a~n~~g-~--~~~----------------------~~~~~~~~~~~W~~~g~~l~~~~~~~~l~i~~v~~~d  128 (286)
                      |+|.|+|.+.+... .  ..+                      .....+++.+.|++|+..+.. .....|.+..  .+|
T Consensus        80 D~G~Y~C~v~~~~~~~~~~~L~V~~~~~~P~i~~~~~~v~L~C~~~~gp~p~i~W~~~~~~l~~-~~~~~l~~~~--~~d  156 (180)
T 2dru_A           80 DRGDYYMRMLHETEDQWKITMEVYEMVSKPMIYWECSNATLTCEVLEGTDVELKLYQGKEHLRS-LRQKTMSYQW--TNL  156 (180)
T ss_dssp             GCEEEEEEEESSSEEEEEEEEEEECCCCCCEEEEEGGGTEEEEECSSCTTCEEEEEETTEEEEE-ESSSEEEEEC--SCC
T ss_pred             HCeEEEEEEEcCCeEEEEEEEEEECCCCCCEEEecCCCEEEEEEeCCCCCCEEEEEECCeECcC-CCCCEEEEEE--hhc
Confidence            99999999877641 1  111                      111124578999999998762 2234566633  789


Q ss_pred             CeeEEEEEEcCCcce
Q psy15667        129 RGIYQCIARRSDGDV  143 (286)
Q Consensus       129 ~G~Y~C~a~~~~g~~  143 (286)
                      +|.|+|.|.|..+..
T Consensus       157 ~g~Y~C~a~N~~~~~  171 (180)
T 2dru_A          157 RAPFKCKAVNRVSQE  171 (180)
T ss_dssp             SSCEEEEEEETTEEE
T ss_pred             CccEEEEEecCcCcc
Confidence            999999999988754

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=98.99  E-value=5.8e-10  Score=90.93  Aligned_cols=78  Identities=26%  Similarity=0.245  Sum_probs=57.5

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEee--CCEEcC------------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL--DGFELP------------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~--~~~~l~------------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .|...+..+.+.+|++++|.|.+.+.|.+.+.|+|  +|..+.            ...|+.+..    . .....|.|.+
T Consensus       141 ~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~-~~~~~L~I~~  215 (257)
T 1f3r_B          141 KLTQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG----S-GTDYTLTISS  215 (257)
T ss_dssp             CSCEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----E-BTEEEEEECS
T ss_pred             EEEccCCEEEEcCCCCEEEEEEECCcCCCcEEEEEECCCCCcEEEEEEccCCCCCcCCCEEEec----C-CCEEEEEECC
Confidence            34445566789999999999999999989999999  554331            123443311    1 1224699999


Q ss_pred             cccCCCeEEEEEEEcCC
Q psy15667         70 VTVEDGGEYACVAENRA   86 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~~   86 (286)
                      ++.+|+|.|.|.|.|..
T Consensus       216 v~~~D~G~Y~C~a~n~~  232 (257)
T 1f3r_B          216 LQPEDVATYFCYQYNNG  232 (257)
T ss_dssp             CCGGGCSEEEEEEESSS
T ss_pred             CChhhCEEEEEEEeCCC
Confidence            99999999999999964

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=98.99  E-value=2.1e-09  Score=76.27  Aligned_cols=79  Identities=20%  Similarity=0.346  Sum_probs=56.8

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCC--CCeeEEeeCC--EE----cCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLDG--FE----LPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~~--~~----l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      .+...+..+++.+|++|+|.|.+.+.+  .+.+.|+++.  ..    +..+.|+....  . .......|+|.+++.+|+
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~~~~~Ds   78 (113)
T 1sq2_N            2 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETV--N-SGSKSFSLRINDLTVEDG   78 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEE--E-TTTTEEEEEECSCCGGGC
T ss_pred             ceEeCCccEEEecCCCEEEEEEECCCcCCCCEEEEEEeCCCCCceEeEEeCCCEEEEE--e-CCCCEEEEEECCCChhhC
Confidence            355667778999999999999998765  5789999863  21    22345554321  1 112234699999999999


Q ss_pred             eEEEEEEEcC
Q psy15667         76 GEYACVAENR   85 (286)
Q Consensus        76 G~Y~C~a~n~   85 (286)
                      |.|.|.+.+.
T Consensus        79 G~Y~C~~~~~   88 (113)
T 1sq2_N           79 GTYRCGLGVA   88 (113)
T ss_dssp             EEEEEEECBT
T ss_pred             EEEEEEEEeC
Confidence            9999998873

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=98.99  E-value=4e-10  Score=99.61  Aligned_cols=79  Identities=27%  Similarity=0.426  Sum_probs=60.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCC-eeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDG-KPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      ..+.+|+.+.|.|.+.   |.|.+.|++++ ..+.... ...+...  ..++|.|.+++.+|+|.|+|.|.|.+|....+
T Consensus       362 ~~v~~G~~~~l~C~~~---p~p~i~W~~~~~~~~~~~~~~~~~~~~--~~g~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~  436 (452)
T 3zyi_A          362 LNISEGRMAELKCRTP---PMSSVKWLLPNGTVLSHASRHPRISVL--NDGTLNFSHVLLSDTGVYTCMVTNVAGNSNAS  436 (452)
T ss_dssp             EECCTTSCCEECCBCC---TTSEEEEECTTSCEECSSCCCSSCEEC--TTSCEECSSCCTTCCEEEEEEEECSSCEEEEE
T ss_pred             ccccCCCEEEEEEeCC---CCCcEEEEeCCCcEeccCCCCCCEEEC--CCCeEEEeecCHHHCEEEEEEEEcCCCcEEEE
Confidence            3578999999999875   88999999954 4443221 1111111  24579999999999999999999999999999


Q ss_pred             EEEEEC
Q psy15667        281 SKLQVK  286 (286)
Q Consensus       281 ~~L~V~  286 (286)
                      +.|.|+
T Consensus       437 ~~l~v~  442 (452)
T 3zyi_A          437 AYLNVS  442 (452)
T ss_dssp             EEEEC-
T ss_pred             EEEEEE
Confidence            999874

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=98.98  E-value=1.9e-10  Score=90.57  Aligned_cols=63  Identities=21%  Similarity=0.444  Sum_probs=50.5

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC--eeEeceEEecccceeEEEEEccc-ccCCCeEEEEEEEcCCE
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN--RFVIGQFVSGHGDVISHVNISHV-TVEDGGEYACVAENRAG   87 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~--~~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C~a~n~~g   87 (286)
                      .+|++++|.|.  |.|.|.+.|++|+..+....  +...    ...    ..|.|.++ +.+|+|.|+|.|.|..|
T Consensus       126 ~~G~~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~~----~~~----~~L~I~~v~~~~D~G~Y~C~A~N~~g  191 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEILWQHNDKNIGGDEDDKNIG----SDE----DHLSLKEFSELEQSGYYVCYPRGSKP  191 (204)
T ss_dssp             EETTEEEEECS--CCCSSCEEEEETTEEESCCTTCTTEE----EET----TEEEETTCCHHHHCEEEEEEETTSCG
T ss_pred             ecCCcEEEEcC--CCCCCceEEEECCEECCCccCCceEe----cCC----CEEEEeeCCccccCEEEEEEeccCCC
Confidence            39999999998  78999999999999886532  2211    111    14899999 99999999999999876

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=98.98  E-value=1.3e-09  Score=77.28  Aligned_cols=80  Identities=24%  Similarity=0.374  Sum_probs=55.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EEc----------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FEL----------PTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~l----------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      +...+.++.+.+|++++|.|.+.+.+ +.+.|+|+.  ..+          ..+.|+....  .........|.|.+++.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~l~~~~~~~~~~~r~~~~~--~~~~~~~~~L~I~~v~~   80 (113)
T 1h5b_A            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAF--DSERARYSTLHIRDAQL   80 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCEEEEEEESSSEEEETTEEEEC--CSSSSSEEEEEECSCCG
T ss_pred             eEECCCEEEEecCCcEEEEEEECCCC-ceEEEEEECCCCCeEEEEEECCCCccCCceEEEE--ccCCCCEEEEEECCCCh
Confidence            45567778899999999999998765 689999853  111          0123333210  00012234699999999


Q ss_pred             CCCeEEEEEEEcCCE
Q psy15667         73 EDGGEYACVAENRAG   87 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g   87 (286)
                      +|+|.|.|.+.|..|
T Consensus        81 ~DsG~Y~C~~~n~~~   95 (113)
T 1h5b_A           81 EDSGTYFCAAEASSG   95 (113)
T ss_dssp             GGCEEEEEEEECSSS
T ss_pred             hhCEEEEEEEecCCC
Confidence            999999999998643

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=98.98  E-value=4.3e-09  Score=83.82  Aligned_cols=82  Identities=17%  Similarity=0.244  Sum_probs=59.3

Q ss_pred             CeeEeccccccccCCCcE-EEEEEe-ecCCCCeeEEeeCCEEcCCCC----eeEeceEEe-c-ccc--eeEEEEEccccc
Q psy15667          3 PILTYSFIEQTLQPGPAV-SLKCIA-SGNPTPDIGWTLDGFELPTNN----RFVIGQFVS-G-HGD--VISHVNISHVTV   72 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~-~l~C~~-~g~p~p~v~W~~~~~~l~~~~----~~~~~~~~~-~-~~~--~~~~l~I~~~~~   72 (286)
                      |.|...+....+.+|+.+ +|.|.+ .|.|.|.+.|++++..+....    ++.+..... . .+.  ....|.|.....
T Consensus       119 ~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~L~i~~~~~  198 (231)
T 2pet_A          119 TEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYRNGQRLEVPVEMNPEGYMTSRTVREASGLLSLTSTLYLRLRKD  198 (231)
T ss_dssp             CEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEETTEECCCCSSCCSSEEEEEEEEECTTSCEEEEEEEEEECCGG
T ss_pred             cEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEECCccCccccccccceeecceeEecCCCeEEEEEEEEEecchh
Confidence            566666667778899998 999999 899999999999999987554    443321111 1 111  113477876666


Q ss_pred             CCCeEEEEEEEc
Q psy15667         73 EDGGEYACVAEN   84 (286)
Q Consensus        73 ~D~G~Y~C~a~n   84 (286)
                      +|+|.|+|.|.|
T Consensus       199 dd~g~Y~C~a~n  210 (231)
T 2pet_A          199 DRDASFHCAAHY  210 (231)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             hCCceEEEEEEc
Confidence            679999999999

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=98.98  E-value=1.5e-09  Score=85.09  Aligned_cols=77  Identities=18%  Similarity=0.202  Sum_probs=54.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|||..+........  .  ..+.....|.|.+++  |+|.|+|.
T Consensus       108 ~p~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~--~--~~~~~~~~L~i~~v~--d~G~Y~C~  179 (201)
T 1nkr_A          108 KPSLSAQPG-PTVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLPAGP--K--VNGTFQADFPLGPAT--HGGTYRCF  179 (201)
T ss_dssp             CCEEEEESC-SEECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEECEE--E--ETTEEEEEEEEEECC--SCEEEEEE
T ss_pred             CCceecCCC-CccCCCCeEEEEEeCCC-CCceEEEEECCcccCccccccc--c--cCCceEEEEEeCCcC--CCeeEEEE
Confidence            456665553 57899999999999886 5688999999987653221111  0  011112358899998  99999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      |.+..
T Consensus       180 a~~~~  184 (201)
T 1nkr_A          180 GSFHD  184 (201)
T ss_dssp             EEETT
T ss_pred             EEcCC
Confidence            98754

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=98.98  E-value=1.9e-09  Score=84.28  Aligned_cols=79  Identities=18%  Similarity=0.183  Sum_probs=51.5

Q ss_pred             CCCCeEEEEEeeecCCCC-----CeEEEEe-CCeeCCCCCCceeeec--CCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        206 PEGARTRVICGVTHGDPP-----LTIRWLK-DGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~-----~~~~W~~-~g~~~~~~~~~~~~~~--~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      .+|+.+.|.|.+. +.|.     +.+.|+| ++.......+..+...  ......|.|.+++.+|+|.|+|.|.|..|..
T Consensus        15 ~~G~~v~L~C~~~-~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~   93 (202)
T 3bp6_B           15 DVGSSVSLECDFD-RRECTELEGIRASLQKVENDTSLQSERATLLEEQLPLGKALFHIPSVQVRDSGQYRCLVICGAAWD   93 (202)
T ss_dssp             ETTSCEEEEEEEC-TTC---CTTEEEEEEECC--CCCBCSSCEECGGGGGGTEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eCCCcEEEEEEec-CCCCCCccceEEEEEcCCCcccccCCceEEeeccccCCeeEEEECCCCHHHCcEEEEEEEeCCCcc
Confidence            3455555555443 3333     6788998 4443333334433221  1135689999999999999999999999988


Q ss_pred             eeEEEEEE
Q psy15667        278 RYSSKLQV  285 (286)
Q Consensus       278 ~~~~~L~V  285 (286)
                      ...+.|.|
T Consensus        94 ~~~~~l~V  101 (202)
T 3bp6_B           94 YKYLTVKV  101 (202)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            88888876

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=98.97  E-value=1.1e-08  Score=78.85  Aligned_cols=70  Identities=10%  Similarity=0.132  Sum_probs=41.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCe--EEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCe-EEEEEEEecc
Q psy15667        205 LPEGARTRVICGVTHGDPPLT--IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTA  274 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~--~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~  274 (286)
                      +.+|+.+.|.|.+..+.|...  +.|+|+++.+....-............+..-.+..+|.| .|+|.|.-.+
T Consensus       100 ~~~G~~~tL~C~v~~v~P~~~L~v~llrG~~~l~~~~f~~~~~~~~~~tv~~~~~~~r~D~g~~~sC~A~L~L  172 (192)
T 1zxq_A          100 VAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDL  172 (192)
T ss_dssp             ECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEEC
T ss_pred             ccCCCcEEEEEEeCCeECCCCcEEEEEcCCEEeeecccccccCcCcceEEEEEEecchhhCCceEEEEEEecC
Confidence            556777777777776666654  789999987732100000000011112233456677877 9999999876

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=98.97  E-value=2.7e-09  Score=75.34  Aligned_cols=77  Identities=26%  Similarity=0.307  Sum_probs=56.2

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--E---Ec-C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--F---EL-P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~---~l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...+..+++.+|++++|.|.+.+.+.+.+.|++..  .   .| .        ...|+....    . .....|+|.+
T Consensus         6 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~R~~~~~----~-~~~~~L~I~~   80 (111)
T 1i3g_L            6 VLTQSHKFMSTSVGDRVSITCKASQDVGTAVAWYQQKPGQSPKLLIYWASTRHTGVPDRFTGSG----S-GTDFTLTISN   80 (111)
T ss_dssp             CEEESCSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----E-TTEEEEEESS
T ss_pred             eEEEeCCEEEEcCCCCEEEEEEeCCCCCCCEEEEEECCCCCCEEEEEECCccCCCCCCcEEEEc----C-CCEEEEEECC
Confidence            4556677789999999999999998888889999853  1   11 1        123443311    1 1223699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+.+.
T Consensus        81 v~~~DsG~Y~C~~~~~   96 (111)
T 1i3g_L           81 VQSEDLADYFCQQYSS   96 (111)
T ss_dssp             CCGGGCSEEEEEECSS
T ss_pred             CCHHHCEEEEEEEecC
Confidence            9999999999999874

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=98.97  E-value=1.5e-09  Score=88.57  Aligned_cols=79  Identities=24%  Similarity=0.309  Sum_probs=58.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-----eeEEee--CCEEcC------------CCCeeEeceEEeccccee
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-----DIGWTL--DGFELP------------TNNRFVIGQFVSGHGDVI   62 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-----~v~W~~--~~~~l~------------~~~~~~~~~~~~~~~~~~   62 (286)
                      +|.+...+..+.+.+|++++|.|.+.+.|.+     .+.|+|  +|..+.            ...|+....     ....
T Consensus       121 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-----~~~~  195 (256)
T 1nqb_A          121 DIELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYLQKPGQSPKLLIYKVSNRFSGVPDRFSGSG-----SGTD  195 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-----ETTE
T ss_pred             cccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEEECCCCCcEEEEEEeCCCCCccCCcEEEEc-----cCCE
Confidence            3556666777789999999999999998875     999999  565431            123443311     1122


Q ss_pred             EEEEEcccccCCCeEEEEEEEcC
Q psy15667         63 SHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..|.|.+++.+|+|.|+|.|.|.
T Consensus       196 ~~L~I~~v~~~DsG~Y~C~a~~~  218 (256)
T 1nqb_A          196 FTLKISRVEAEDLGVYYCFQGSH  218 (256)
T ss_dssp             EEEEESSCCGGGCEEEEEEECSS
T ss_pred             EEEEECCCChHHCEEEEEEEccC
Confidence            46999999999999999999874

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=98.97  E-value=1.8e-09  Score=85.60  Aligned_cols=83  Identities=23%  Similarity=0.467  Sum_probs=55.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEe-ecCCCCeeEEee-CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTL-DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~-~g~p~p~v~W~~-~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      |.+...+ ...+.+|++++|.|.+ .|.|.|.+.|++ ++..+.......  .. ....+....|.|.++..+|+|.|+|
T Consensus       112 p~i~~~~-~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~~~~~~~~~~~~--~~-~~~~~~~~~l~i~~v~~~d~G~Y~C  187 (222)
T 4i0k_A          112 PSMTLEP-NKDLRPGNMVTITCSSYQGYPEAEVFWKDGQGVPLTGNVTTS--QM-ANERGLFDVHSVLRVVLGANGTYSC  187 (222)
T ss_dssp             CEEECCC------CCSEEEEEEEEEEEBSCCEEEEECTTSCBCCSEEEEE--EE-ECTTSCEEEEEEEEEECCTTCEEEE
T ss_pred             CcEEeCC-CceecCCceEEEEEecccccCCCeEEEEcCCCccCCCCccee--EE-cCCCCeEEEEEEEEEEeCCCCEEEE
Confidence            5555443 4477899999999999 789999999999 455554322221  11 1123334457899999999999999


Q ss_pred             EEEcCCEEE
Q psy15667         81 VAENRAGTC   89 (286)
Q Consensus        81 ~a~n~~g~~   89 (286)
                      .|.|..|..
T Consensus       188 ~a~n~~g~~  196 (222)
T 4i0k_A          188 LVRNPVLQQ  196 (222)
T ss_dssp             EEEETTTTE
T ss_pred             EEECCCCCC
Confidence            999987644

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=98.96  E-value=2.3e-09  Score=76.11  Aligned_cols=36  Identities=19%  Similarity=0.343  Sum_probs=32.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|+|.+.| ..|.....+.|.|
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~L~V  114 (118)
T 3udw_C           78 NASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRV  114 (118)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CcEEEEeecChHHCeEEEEEEEECCCCCccceEEEEE
Confidence            55899999999999999999999 7788888888876

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=98.95  E-value=1.4e-09  Score=88.52  Aligned_cols=79  Identities=23%  Similarity=0.260  Sum_probs=59.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEcC------------CCCeeEeceEEecccceeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFELP------------TNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      +|.+...+....+.+|++++|.|.+.+.|.+.+.|+|+  +..+.            ...|+....    . .....|.|
T Consensus       138 ~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~-~~~~~L~I  212 (256)
T 3umt_A          138 DIQLTQSPSSLSASLGERVSITCRASQDIGSNLNWLQQKPDGTIKRLIYATSSLDSGVPKRFSGSR----S-GSDYSLTI  212 (256)
T ss_dssp             CCCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTCCEEEEEETTTEECTTSCTTEEEEE----E-TTEEEEEE
T ss_pred             ccEEEcCCCeEEEECCCCEEEEEEEecCCCcEEEEEEECCCCCcEEEEEeccccCCccCCCEEEec----C-CCEEEEEE
Confidence            56777777778999999999999999999999999984  22211            123443211    1 12345999


Q ss_pred             cccccCCCeEEEEEEEcC
Q psy15667         68 SHVTVEDGGEYACVAENR   85 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+++.+|+|.|.|.|.|.
T Consensus       213 ~~v~~~D~G~Y~C~~~~~  230 (256)
T 3umt_A          213 SSLESEDFVDYYCLQYAS  230 (256)
T ss_dssp             CSCCGGGCSEEEEEECSS
T ss_pred             CCCChhHCEEEEEEEeeC
Confidence            999999999999999884

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=98.95  E-value=4.5e-09  Score=82.05  Aligned_cols=73  Identities=16%  Similarity=0.287  Sum_probs=52.6

Q ss_pred             cCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         15 QPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        15 ~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      ..|+.++|.|.+. |.|.|.|+|++||..|........   ....++......+..+..+|+|.|+|.|.|..|...
T Consensus       119 ~~g~~~~l~C~~~~g~P~p~i~W~k~g~~l~~~~~~~~---~~~~~~~~~~~~~~~v~~~d~g~Y~C~a~n~~~~~s  192 (201)
T 1dr9_A          119 PTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS---QDPETELYAVSSKLDFNMTTNHSFMCLIKYGHLRVN  192 (201)
T ss_dssp             SSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE---ECTTTCCEEEEEEEEEETTSCEEEEEEEEETTCCEE
T ss_pred             CCCCeEEEEEecCCccCCCEEEEEECCEECccccceEE---ecCCCcEEEEEEEEEEEecCCCEEEEEEecCcceee
Confidence            4589999999995 999999999999999875433211   111223322234456677899999999999887654

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=98.95  E-value=8.4e-10  Score=87.03  Aligned_cols=85  Identities=14%  Similarity=0.215  Sum_probs=60.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.|...+.+..+..|+.++|.|.+.|.|+  +.+.|++||..+..+............+.  ....|.|.....+|+|.
T Consensus       112 ~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k~g~~l~~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~  191 (213)
T 3r06_A          112 KPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWKVDGSEKRDGVLQSVTDQDSKDSTYSLSSTLSLTKADYERHNL  191 (213)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEEECCcccCCceEeccCceeCCCCcEEEEEEEEeCHHHhccCCe
Confidence            677887777777888999999999998654  48999999999865320100000011111  12358899999999999


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|.|.|..
T Consensus       192 YtC~v~n~~  200 (213)
T 3r06_A          192 YTCEVTHKT  200 (213)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEecc
Confidence            999999964

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=98.95  E-value=1e-08  Score=71.92  Aligned_cols=96  Identities=18%  Similarity=0.234  Sum_probs=55.3

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~  241 (286)
                      .+.+.+|++++|.|.+.+.|.+.+.|.+..+...              ..+            +. +.++..- ....++
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~--------------~~~------------l~-~~~~~~~~~~~~r~   62 (108)
T 1jhl_L           10 YLVASPGETITINCRASKSISKSLAWYQEKPGKT--------------NNL------------LI-YSGSTLQSGIPSRF   62 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSC--------------CEE------------EE-ETTTEECTTCCTTE
T ss_pred             eeEEcCCCCEEEEeEECCCCCceEEEEEECCCCC--------------CEE------------EE-EcCCCcCCCCCceE
Confidence            3566788888888888887777888877431100              000            00 0000000 011233


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      .+.. ......|.|.+++.+|+|.|.|.|.|... .....+.|.|+
T Consensus        63 ~~~~-~~~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~L~V~  107 (108)
T 1jhl_L           63 SGSG-SGTDFTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             EEEE-SSSEEEEEECSCCTTCCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             EEEe-cCCEEEEEECCCCHHHCEEEEEEEccCCccEECCCEEEEEE
Confidence            3222 22356899999999999999999999732 22234456664

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=98.95  E-value=1.7e-09  Score=89.46  Aligned_cols=77  Identities=25%  Similarity=0.361  Sum_probs=57.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEee--CCEEcC------------CCCeeEeceEEecccceeEEEEEc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL--DGFELP------------TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~--~~~~l~------------~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      |.+...+..+.+.+|++++|.|.+.+.| +.+.|+|  +|..+.            .+.|+....    . .....|.|.
T Consensus       163 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~----~-~~~~~L~I~  236 (282)
T 1qok_A          163 NVLTQSPAIMSASPGEKVTITCSASSSV-SYMHWFQQKPGTSPKLWIYSTSNLASGVPARFSGSG----S-GTSYSLTIS  236 (282)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCC-SCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----E-TTEEEEEES
T ss_pred             eEEecCCCEEEEcCCCcEEEEEEecCCC-ceEEEEEECCCCCcEEEEEEecCCCCcccCCeEEec----C-CCEEEEEEc
Confidence            4566667777899999999999999999 8999999  565431            134443321    1 122369999


Q ss_pred             ccccCCCeEEEEEEEcC
Q psy15667         69 HVTVEDGGEYACVAENR   85 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n~   85 (286)
                      +++.+|+|.|.|.|.|.
T Consensus       237 ~v~~~DsG~Y~C~a~~~  253 (282)
T 1qok_A          237 RMEAEDAATYYCQQRSS  253 (282)
T ss_dssp             SCCGGGCEEEEEEECSS
T ss_pred             cCChhHCEEEEEEEeeC
Confidence            99999999999999874

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=98.95  E-value=1.3e-08  Score=73.46  Aligned_cols=36  Identities=14%  Similarity=0.359  Sum_probs=33.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +..|.|.+++.+|+|.|+|.+.|..|....++.|.|
T Consensus        83 ~~sL~I~~v~~~D~G~Y~C~v~~~~g~~~~~v~LkV  118 (125)
T 4gos_A           83 NASLRLKNVQLTDAGTYKCYIITSKGKGNANLEYKT  118 (125)
T ss_dssp             BCCEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             eEEEEECCCChHHCEEEEEEEEeCCCeEEEEEEEEE
Confidence            457999999999999999999999999999999887

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=98.95  E-value=1.1e-09  Score=87.88  Aligned_cols=79  Identities=19%  Similarity=0.208  Sum_probs=57.4

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCE--E---c---------CCCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGF--E---L---------PTNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .|...+....+.+|++++|.|.+.+.|.|.+.|+|++.  .   +         ..+.++.+..  . .......|.|.+
T Consensus       129 ~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~  205 (238)
T 2p1y_A          129 QVRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFF--N-KREKKLSLHIAD  205 (238)
T ss_dssp             CCEEECSEEEEETTSCEEEEEECCCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEE--E-TTTTEEEEEETT
T ss_pred             eEEccCceEEEeCCCeEEEEEEEecCCCCcEEEEEECCCCCCEEEEEEccCCCcccCCceEEEe--c-CCCCeEEEEEcC
Confidence            56666777789999999999999999999999999641  1   1         0122332210  0 111234699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|+|.|.|.
T Consensus       206 v~~~D~G~Y~C~a~n~  221 (238)
T 2p1y_A          206 SQPGDSATYFCAAIDT  221 (238)
T ss_dssp             CCGGGCEEEEEEEEET
T ss_pred             CCHHHCEEEEEEEeeC
Confidence            9999999999999986

>2d9q_B Granulocyte colony-stimulating factor receptor; cytokine, ligand-receptor complex, signaling protein-cytokin; HET: NAG; 2.80A {Homo sapiens} SCOP: b.1.1.3 b.1.2.1 b.1.2.1

Probab=98.94  E-value=5.5e-08  Score=81.49  Aligned_cols=74  Identities=20%  Similarity=0.289  Sum_probs=52.8

Q ss_pred             ccccccccCCCcEEEEEEeecC-----CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-----PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-----p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      .+.+.++..|++++|.|.+.++     |.+.+.|.+||..|+.+ ++..    ..++.....|.|.++...|+|.|+|.+
T Consensus         6 ~p~~~~v~~G~~v~l~C~~~~~~~~~~~~~~i~W~~~g~~l~~~-~~~~----~~~~~~~~~L~i~~~~~~d~g~y~c~~   80 (313)
T 2d9q_B            6 SVSAPIVHLGDPITASCIIKQNCSHLDPEPQILWRLGAELQPGG-RQQR----LSDGTQESIITLPHLNHTQAFLSCSLN   80 (313)
T ss_dssp             EESCSEECTTCCEEEEECCCTTSCSSCSCSCCEEESSSCBCTTC-EECC----CSSSCCCEEEEESCCCSSEEEEEEEEE
T ss_pred             ECCCcEEcCCCCEEEEEEECCCCCCCCcccceEEEeCCEECCcc-ceEE----EecCeEEEEEEEeccCCCccceEEeee
Confidence            3456789999999999999997     67899999999888543 2210    112221235778888888888888877


Q ss_pred             EcCC
Q psy15667         83 ENRA   86 (286)
Q Consensus        83 ~n~~   86 (286)
                      .+..
T Consensus        81 ~~~~   84 (313)
T 2d9q_B           81 WGNS   84 (313)
T ss_dssp             SSSS
T ss_pred             cCCC
Confidence            5543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=98.94  E-value=9.7e-10  Score=88.04  Aligned_cols=85  Identities=16%  Similarity=0.256  Sum_probs=60.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CC-CCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NP-TPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+.....+..+.+|+.++|.|.+.| .| .+.+.|++||..+..+............+.  ....|.|..+..+|+|.
T Consensus       135 ~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~  214 (237)
T 3sob_L          135 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV  214 (237)
T ss_dssp             CCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEEECCCCCCCceeecccccccCCCcEEEEEEEEEcHHHccCCCc
Confidence            677777666666777999999999998 45 589999999998875320000000011111  12458899999999999


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|.|.|..
T Consensus       215 Y~C~a~n~~  223 (237)
T 3sob_L          215 YACEVTHQG  223 (237)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEeeCC
Confidence            999999975

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=98.94  E-value=2.8e-09  Score=87.37  Aligned_cols=117  Identities=16%  Similarity=0.155  Sum_probs=52.3

Q ss_pred             CCCCCCeeEEEEEEcCCcceeeeeeEEEEcCCCceecCCceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccC
Q psy15667        124 VGREDRGIYQCIARRSDGDVAQGSAELQLGGLPYVRLIPKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFD  203 (286)
Q Consensus       124 v~~~d~G~Y~C~a~~~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~  203 (286)
                      ..+.|.+.|.|.+.+..|... ....+.|.     .....+.+.+|++++|.|.+.+ +.+.+.|.+..+.         
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~-~~~~~~v~-----~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~---------   66 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSG-GGGGMKVI-----QTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKN---------   66 (270)
T ss_dssp             --------------------------CCCE-----EECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTT---------
T ss_pred             chhhhHHHHHHHHhccCCccc-cccceeEE-----eCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCC---------
Confidence            357899999999998766432 22222221     1223467788999999998765 6678888763211         


Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC----CceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~----~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                                       ..+..+.+..++.......    ++.+.........|.|.+++.+|+|.|.|.+.|.
T Consensus        67 -----------------~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~~~~~  123 (270)
T 3qib_D           67 -----------------NEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEIQSSEAGDSALYLCASSLN  123 (270)
T ss_dssp             -----------------CCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEESSCCGGGCEEEEEEEESC
T ss_pred             -----------------CCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEECCCCHhHCeEEEEEEecC
Confidence                             1111122223322111110    2222221233568999999999999999999964

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=98.93  E-value=2.1e-09  Score=75.95  Aligned_cols=77  Identities=21%  Similarity=0.221  Sum_probs=55.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCC----CCeeEEeeCC--EE---c-C--------CCCeeEeceEEecccceeEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNP----TPDIGWTLDG--FE---L-P--------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~--~~---l-~--------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      .+...+..+++.+|++++|.|.+.+.+    .+.+.|+++.  ..   | .        ...|+....    .+ ....|
T Consensus         3 ~v~q~p~~~~~~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~R~~~~~----~~-~~~~L   77 (111)
T 1j05_L            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG----SR-TDFTL   77 (111)
T ss_dssp             CEEEECSEEECCTTSCEEEEEEESSCCEETTEECEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE----ET-TEEEE
T ss_pred             cEEEeCCEEEEeCCCCEEEEeecCCCcccCCCceEEEEEeCCCCCCEEEEEecCcCCCCCCCcEEEEc----cC-CEEEE
Confidence            355567778999999999999998877    5789999853  21   1 1        123444321    11 22369


Q ss_pred             EEcccccCCCeEEEEEEEcC
Q psy15667         66 NISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .|.+++.+|+|.|.|.+.+.
T Consensus        78 ~I~~v~~~DsG~Y~C~~~~~   97 (111)
T 1j05_L           78 IIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             EESSCCGGGCEEEEEEECSS
T ss_pred             EECCCCcccCEEEEEEEecC
Confidence            99999999999999999874

>1i1r_A GP130, interleukin-6 receptor beta chain; cytokine/receptor complex, GP130; 2.40A {Homo sapiens} SCOP: b.1.2.1 b.1.2.1 b.1.2.1 PDB: 1p9m_A

Probab=98.92  E-value=1.2e-07  Score=79.06  Aligned_cols=70  Identities=16%  Similarity=0.296  Sum_probs=51.3

Q ss_pred             eccccccccCCCcEEEEEEeec-------CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASG-------NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g-------~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +.+.+.++.+|++++|.|.+.+       .|.|.+.|++||..|+.+ ++.+   .  ++. ...|.|.++...| |.|+
T Consensus         9 i~P~~~~v~~G~~v~l~C~~~~~~~~~~~~p~p~i~W~~~g~~i~~~-~~~~---~--~~~-~~~L~i~~~~~~~-g~Y~   80 (303)
T 1i1r_A            9 ISPESPVVQLHSNFTAVCVLKEKCMDYFHVNANYIVWKTNHFTIPKE-QYTI---I--NRT-ASSVTFTDIASLN-IQLT   80 (303)
T ss_dssp             EESSSCEEETTCCEEEEEEECHHHHHHHTCCGGGEEEEETTEECCGG-GCEE---E--ETT-EEEEEECSCCCSE-EEEE
T ss_pred             EccCCceEeCCCCEEEEEEECCccccccCCChhheEEEECCEECChh-heee---e--CCc-EEEEEEcCcCCCc-eEEE
Confidence            4567788999999999999996       488999999999988643 3321   1  111 2357788887764 7788


Q ss_pred             EEEEc
Q psy15667         80 CVAEN   84 (286)
Q Consensus        80 C~a~n   84 (286)
                      |.|.+
T Consensus        81 C~a~~   85 (303)
T 1i1r_A           81 CNILT   85 (303)
T ss_dssp             EEEEE
T ss_pred             Eeccc
Confidence            87765

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=98.92  E-value=2.4e-09  Score=87.07  Aligned_cols=79  Identities=23%  Similarity=0.309  Sum_probs=58.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC-CeeEEeeC--CEEcC------------CCCeeEeceEEecccceeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLD--GFELP------------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~--~~~l~------------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +|.+...+....+.+|++++|.|.+.+.|. +.+.|+|.  +..+.            ...|+.+..    .+ ....|.
T Consensus       149 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~-~~~~L~  223 (256)
T 3juy_B          149 EIVLTQAPGTLSLSPGERATFSCRSSHSIRSRRVAWYQHKPGQAPRLVIHGVSNRASGISDRFSGSG----SG-TDFTLT  223 (256)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTTCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ET-TEEEEE
T ss_pred             eeEEEecCCeEEEeCCCCEEEEEEECCCcCCeeEEEEEECCCCCcEEEEEecCccCCccCCcEEEEc----cC-CEEEEE
Confidence            467777888889999999999999999886 89999983  22211            123443211    11 224599


Q ss_pred             EcccccCCCeEEEEEEEcC
Q psy15667         67 ISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~   85 (286)
                      |.+++.+|+|.|.|.|.|.
T Consensus       224 I~~v~~~DsG~Y~C~~~~~  242 (256)
T 3juy_B          224 ITRVEPEDFALYYCQVYGA  242 (256)
T ss_dssp             ESSCCGGGCSEEEEEECCS
T ss_pred             ECCCCHhHCEEEEEEEeeC
Confidence            9999999999999999884

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=98.91  E-value=1.2e-09  Score=87.32  Aligned_cols=86  Identities=16%  Similarity=0.259  Sum_probs=54.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+.++|.|.+.|. |.+ .+.|+|||..+..+...........++.  ....|.|..+..+|+|.
T Consensus       134 ~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~g~  213 (233)
T 3bqu_C          134 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  213 (233)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEEC-----CCEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCC
T ss_pred             CCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEECCeeCCCCceEecCCccCCCCCEEEEEEEEECHHHhCCCCC
Confidence            6777766665555689999999999985 444 7999999988765411110000011111  22458899999999999


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|.|.|...
T Consensus       214 Y~C~a~n~~~  223 (233)
T 3bqu_C          214 YTCEATHKTS  223 (233)
T ss_dssp             EEEEEEEC--
T ss_pred             EEEEEEeCCC
Confidence            9999999643

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	286
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	5e-13
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	2e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	2e-12
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	3e-11
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	8e-12
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-11
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-10
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	3e-11
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	4e-09
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	8e-11
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	6e-09
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-11
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	6e-09
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-10
d2aw2a1	104	b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator	1e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	2e-10
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-07
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	4e-10
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	3e-08
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	8e-10
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	5e-06
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.003
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	1e-09
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-08
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	3e-09
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	9e-08
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	4e-09
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	9e-08
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	8e-09
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	1e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	1e-08
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	8e-07
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	1e-08
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	4e-06
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	1e-08
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	0.003
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	1e-08
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	4e-06
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	2e-08
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	4e-07
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	7e-08
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	3e-05
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-07
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	2e-07
d1olza1	92	b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {	2e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	2e-07
d1pd6a_	94	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	6e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	4e-07
d1iray2	103	b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor	2e-06
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-07
d1he7a_	107	b.1.1.4 (A:) High affinity nerve growth factor rec	5e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	7e-07
d1iray1	101	b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {H	0.002
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-06
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	6e-05
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	2e-06
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	1e-05
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-06
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	1e-04
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	2e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	5e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	2e-06
d1iama1	103	b.1.1.3 (A:83-185) Intercellular cell adhesion mol	7e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	4e-06
d1zxqa1	106	b.1.1.3 (A:87-192) Intercellular cell adhesion mol	2e-05
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	7e-06
d1wwca_	105	b.1.1.4 (A:) NT3 binding domain of trkC receptor {	2e-04
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	7e-06
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	2e-04
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	2e-05
d2c9aa1	96	b.1.1.4 (A:184-279) Receptor-type tyrosine-protein	6e-05
d1q0xl2	102	b.1.1.2 (L:108-212) Immunoglobulin light chain lam	3e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	4e-05
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	0.001
d1nfde2	104	b.1.1.2 (E:108-215) Immunoglobulin light chain lam	4e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	5e-05
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	0.001
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	6e-05
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	9e-05
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	1e-04
d1tiua_	89	b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig re	2e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	0.004
d1o0va1	104	b.1.1.2 (A:228-330) Immunoglobulin heavy chain eps	3e-04
d1eaja_	124	b.1.1.1 (A:) Coxsackie virus and adenovirus recept	5e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	5e-04
d1rhfa2	85	b.1.1.4 (A:98-182) Tyrosine-protein kinase recepto	0.004
d1gsma1	90	b.1.1.4 (A:1-90) Mucosal addressin cell adhesion m	6e-04
d2dava1	113	b.1.1.4 (A:8-120) Myosin-binding protein C, slow-t	6e-04
d2fcba2	88	b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (C	0.001
d1ucta1	99	b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD8	0.001
d1rzfl2	102	b.1.1.2 (L:109-210) Immunoglobulin light chain lam	0.001
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.001
d1biha2	111	b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecro	0.002
d3frua1	91	b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 dom	0.001
d1ogae2	127	b.1.1.2 (E:119-245) T-cell antigen receptor {Human	0.001
d1ow0a2	108	b.1.1.2 (A:343-450) Immunoglobulin heavy chain alp	0.002
d1igtb4	102	b.1.1.2 (B:363-474) Immunoglobulin heavy chain gam	0.002
d1d5mb1	98	b.1.1.2 (B:93-190) Class II MHC beta chain, C-term	0.002
d1l6xa2	102	b.1.1.2 (A:342-443) Immunoglobulin heavy chain gam	0.002
d1fp5a2	105	b.1.1.2 (A:439-543) Immunoglobulin heavy chain eps	0.003
d3b5ha2	80	b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo s	0.003
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	0.003
d1cs6a2	105	b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gall	0.003
d1cqka_	101	b.1.1.2 (A:) Immunoglobulin heavy chain gamma cons	0.003
d1epfa1	97	b.1.1.4 (A:1-97) Neural cell adhesion molecule (NC	0.003
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.004
d1f97a1	102	b.1.1.1 (A:27-128) Junction adhesion molecule, JAM	0.004

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 61.7 bits (149), Expect = 5e-13
 Identities = 23/81 (28%), Positives = 32/81 (39%), Gaps = 4/81 (4%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +     V  +C A GNP P + W  +G E    +R    +  + H  +I       V 
Sbjct: 15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIME----SVV 70

Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D G Y CV EN  G+   T
Sbjct: 71 PSDKGNYTCVVENEYGSINHT 91

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 59.8 bits (144), Expect = 2e-12
 Identities = 24/100 (24%), Positives = 41/100 (41%), Gaps = 8/100 (8%)

Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD 245
            + EK+  ++ +       +P     +  C    G+P  T+RWLK+GK       +    
Sbjct: 5   TNTEKMEKRLHA-------VPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYK 56

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           + +    L + SV  +  G YTCV  N      ++  L V
Sbjct: 57  VRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 60.8 bits (146), Expect = 2e-12
 Identities = 27/102 (26%), Positives = 36/102 (35%), Gaps = 8/102 (7%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
           VPP   + + P   +  G R  + C    G PP    W KDG  +            + S
Sbjct: 1   VPPSKPTISVPSS-VTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSS 59

Query: 251 -------SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                    L  + V+A  SGEY C A N    A  S    +
Sbjct: 60  FTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHM 101

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 57.3 bits (137), Expect = 3e-11
 Identities = 23/93 (24%), Positives = 35/93 (37%), Gaps = 4/93 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          PP      +  ++  G    L C    G+P  +  W  DG  + T +      F++    
Sbjct: 2  PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFT 61

Query: 61 VI---SHVNISHVTVEDGGEYACVAENRAGTCE 90
          +      +    VT  D GEY C A+N  GT  
Sbjct: 62 IDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAM 94

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 58.5 bits (140), Expect = 8e-12
 Identities = 25/102 (24%), Positives = 41/102 (40%), Gaps = 7/102 (6%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS-- 248
           VPP   +   P      G R  + C    G PP    W KDG  +        +  +S  
Sbjct: 1   VPPSKPTVNIPSS-ATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSY 59

Query: 249 ----FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
                +  L  + +SA+ +GEY+C A N       S+ ++++
Sbjct: 60  VLNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRME 101

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.8 bits (133), Expect = 9e-11
 Identities = 24/94 (25%), Positives = 35/94 (37%), Gaps = 3/94 (3%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
          PP      I  +   G    L C    G+P  +  W  DG  +PTN +       S +  
Sbjct: 2  PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVL 61

Query: 61 VI--SHVNISHVTVEDGGEYACVAENRAGTCEIT 92
                +    ++  D GEY+C A N  GT   +
Sbjct: 62 NPTTGELVFDPLSASDTGEYSCEARNGYGTPMTS 95

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 58.3 bits (140), Expect = 1e-11
 Identities = 27/93 (29%), Positives = 40/93 (43%), Gaps = 5/93 (5%)

Query: 2  PPILTY--SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
          PP +    S +  T   G +V+L C A G P P + WT DG  +            S   
Sbjct: 3  PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFSDDS 62

Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            ++  N+      D  EY C+AEN+AG  + +
Sbjct: 63 SELTIRNV---DKNDEAEYVCIAENKAGEQDAS 92

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 54.9 bits (131), Expect = 1e-10
 Identities = 27/97 (27%), Positives = 42/97 (43%), Gaps = 3/97 (3%)

Query: 191 VPPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDS 248
           VPP +++     +     G    ++C    G P  T+ W KDG+P+      +       
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSD 60

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            SS L+I +V      EY C+A N A +   S  L+V
Sbjct: 61  DSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 97

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 57.2 bits (137), Expect = 3e-11
 Identities = 15/90 (16%), Positives = 31/90 (34%), Gaps = 5/90 (5%)

Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
          P +     +Q ++ G +V L    +G       W     ++  +    +    +G     
Sbjct: 1  PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVENSENGS---- 56

Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            + I     E  G Y  + EN+ G+ +  
Sbjct: 57 -KLTILAARQEHCGCYTLLVENKLGSRQAQ 85

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 20/80 (25%), Positives = 30/80 (37%), Gaps = 2/80 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
            G    +   VT G  P+T  W+K  K +     + V +     S L+I +    H G Y
Sbjct: 14  AGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVEN-SENGSKLTILAARQEHCGCY 71

Query: 267 TCVASNTAAQARYSSKLQVK 286
           T +  N     +    L V 
Sbjct: 72  TLLVENKLGSRQAQVNLTVV 91

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 55.5 bits (133), Expect = 8e-11
 Identities = 19/91 (20%), Positives = 29/91 (31%), Gaps = 10/91 (10%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P           ++ G  V++ C  +G P P++ W+ +   L      V           
Sbjct: 3  PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDS-------- 54

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             + I  V   D G Y C A N  G     
Sbjct: 55 --GLVIKGVKNGDKGYYGCRATNEHGDKYFE 83

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 50.1 bits (119), Expect = 6e-09
 Identities = 20/79 (25%), Positives = 30/79 (37%), Gaps = 7/79 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           +G    + C VT G P   + W  + KP      ++        S L I  V     G Y
Sbjct: 17  QGQDVTIPCKVT-GLPAPNVVWSHNAKP------LSGGRATVTDSGLVIKGVKNGDKGYY 69

Query: 267 TCVASNTAAQARYSSKLQV 285
            C A+N      + + +QV
Sbjct: 70  GCRATNEHGDKYFETLVQV 88

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 55.6 bits (133), Expect = 9e-11
 Identities = 20/91 (21%), Positives = 32/91 (35%), Gaps = 4/91 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +      QT+  G     +    G P P+  W  +G ++  ++R     +     D 
Sbjct: 4  APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRI----YWYWPEDN 59

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          +  + I  VT ED       A N AG     
Sbjct: 60 VCELVIRDVTGEDSASIMVKAINIAGETSSH 90

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 50.6 bits (120), Expect = 6e-09
 Identities = 16/81 (19%), Positives = 26/81 (32%), Gaps = 1/81 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            +G+       V  G P     W K+G  +     +     +     L I  V+   S  
Sbjct: 17  GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSAS 75

Query: 266 YTCVASNTAAQARYSSKLQVK 286
               A N A +    + L V+
Sbjct: 76  IMVKAINIAGETSSHAFLLVQ 96

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 55.4 bits (132), Expect = 1e-10
 Identities = 13/91 (14%), Positives = 23/91 (25%), Gaps = 1/91 (1%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
             +      E ++  G    L+C        P + W                 +     
Sbjct: 2  DVQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKN 61

Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCE 90
               ++   V   D G Y C A  ++   E
Sbjct: 62 ISFFILHFEPVLPNDNGSYRCSANFQSNLIE 92

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.5 bits (88), Expect = 1e-04
 Identities = 14/86 (16%), Positives = 24/86 (27%), Gaps = 5/86 (5%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR----FPVNVSDLDSFSSLLSINSVSAA 261
             G    + C V +      + W K       +          + +    +L    V   
Sbjct: 16  LAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPN 75

Query: 262 HSGEYTCVASNTAAQARYSS-KLQVK 286
            +G Y C A+  +      S  L V 
Sbjct: 76  DNGSYRCSANFQSNLIESHSTTLYVT 101

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 54.9 bits (131), Expect = 2e-10
 Identities = 21/92 (22%), Positives = 33/92 (35%), Gaps = 4/92 (4%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD 60
            P  T + ++  +  G A    C   G P P++ W  D   +  +  F I     G+  
Sbjct: 7  VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCS 66

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          +        V  +D  +Y C A N  G    T
Sbjct: 67 LTIS----EVCGDDDAKYTCKAVNSLGEATCT 94

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 46.8 bits (110), Expect = 1e-07
 Identities = 22/80 (27%), Positives = 37/80 (46%), Gaps = 1/80 (1%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG+  R  C V  G P   + W KD  P+       +   +  +  L+I+ V      +Y
Sbjct: 22  EGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKY 80

Query: 267 TCVASNTAAQARYSSKLQVK 286
           TC A N+  +A  +++L V+
Sbjct: 81  TCKAVNSLGEATCTAELLVE 100

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 53.8 bits (128), Expect = 4e-10
 Identities = 23/100 (23%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 2   PPILTYSFIE-QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT--------NNRFVIG 52
            PIL        +   G  V   C    +  P I W     +  +          + +  
Sbjct: 4   RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKA 63

Query: 53  QFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
             V+     I  + I +VT ED GEY C+A N  G    +
Sbjct: 64  AGVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHS 103

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 3e-08
 Identities = 22/92 (23%), Positives = 39/92 (42%), Gaps = 13/92 (14%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN------------VSDLDSFSSLL 253
             G     +C V   D    I+W+K  +    ++  +            V+  D    +L
Sbjct: 18  VVGGDVEFVCKVY-SDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVL 76

Query: 254 SINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
            I +V+   +GEYTC+A N+   + +S+ L V
Sbjct: 77  YIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV 108

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 52.7 bits (125), Expect = 8e-10
 Identities = 20/78 (25%), Positives = 29/78 (37%), Gaps = 3/78 (3%)

Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
          + T+  G  V L C   G   PDI W  DG  +   ++             I  +++  V
Sbjct: 5  KLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQL---YIPVSEQHWIGFLSLKSV 61

Query: 71 TVEDGGEYACVAENRAGT 88
             D G Y C  E+   T
Sbjct: 62 ERSDAGRYWCQVEDGGET 79

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 5e-06
 Identities = 18/83 (21%), Positives = 32/83 (38%), Gaps = 3/83 (3%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSG 264
            +G   ++ C V  G     I+W+KDG  +     + +      +   LS+ SV  + +G
Sbjct: 9   SQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAG 67

Query: 265 EYTCVASNTAAQARYSS-KLQVK 286
            Y C   +           L V+
Sbjct: 68  RYWCQVEDGGETEISQPVWLTVE 90

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.8 bits (76), Expect = 0.003
 Identities = 16/89 (17%), Positives = 24/89 (26%), Gaps = 3/89 (3%)

Query: 68  SHVTVEDGGE--YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVINPVG 125
             +TV  G      C  E      +I     G  +    +    +  +     L +  V 
Sbjct: 4   VKLTVSQGQPVKLNCSVEGME-EPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVE 62

Query: 126 REDRGIYQCIARRSDGDVAQGSAELQLGG 154
           R D G Y C               L + G
Sbjct: 63  RSDAGRYWCQVEDGGETEISQPVWLTVEG 91

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 53.1 bits (126), Expect = 1e-09
 Identities = 17/122 (13%), Positives = 30/122 (24%), Gaps = 12/122 (9%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
           +  + G  L +  P++G P   V W                    A  R           
Sbjct: 19  IVVVAGNKLRLDVPISGDPAPTVIW-----------QKAITQGNKAPARPAPDAPEDTGD 67

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
                            V V       S+ ++        G YT    N   + + +  +
Sbjct: 68  SDEWVFDKKLLCETEGRVRVET-TKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTV 126

Query: 284 QV 285
           +V
Sbjct: 127 KV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.5 bits (114), Expect = 6e-08
 Identities = 14/104 (13%), Positives = 23/104 (22%), Gaps = 24/104 (23%)

Query: 13  TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH-------------- 58
            +  G  + L    SG+P P + W     +                              
Sbjct: 20  VVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLC 79

Query: 59  ----------GDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
                         S   +     ED G Y    +N  G  ++ 
Sbjct: 80  ETEGRVRVETTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVN 123

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 51.0 bits (121), Expect = 3e-09
 Identities = 22/81 (27%), Positives = 28/81 (34%), Gaps = 5/81 (6%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T+  G +    C   G P P + W   G  L T+ R  +          IS V      
Sbjct: 9  MTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISSV-----Q 63

Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D G Y+ V EN  G  E  
Sbjct: 64 ASDEGNYSVVVENSEGKQEAE 84

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 9e-08
 Identities = 21/80 (26%), Positives = 34/80 (42%), Gaps = 2/80 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG   R  C    G+P  T+ WL+ G+ LS      V+     S+    + V A+  G Y
Sbjct: 13  EGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTTKYKSTFEISS-VQASDEGNY 70

Query: 267 TCVASNTAAQARYSSKLQVK 286
           + V  N+  +      L ++
Sbjct: 71  SVVVENSEGKQEAEFTLTIQ 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 51.0 bits (121), Expect = 4e-09
 Identities = 24/91 (26%), Positives = 29/91 (31%), Gaps = 11/91 (12%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
          P I      +     G  V+L+C A GNP P I W        +                
Sbjct: 5  PSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLH------ 58

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
               I +V  ED G Y C AEN  G     
Sbjct: 59 -----IQNVDFEDEGTYECEAENIKGRDTYQ 84

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 46.7 bits (110), Expect = 9e-08
 Identities = 23/97 (23%), Positives = 37/97 (38%), Gaps = 10/97 (10%)

Query: 190 KVPPKIESFAFPFD-GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
           +  P I++  FP D     G    + C    G+P   I+W K     + ++        S
Sbjct: 2   QYAPSIKA-KFPADTYALTGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKWL-------S 52

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
              LL I +V     G Y C A N   +  Y  ++ +
Sbjct: 53  SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIII 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 50.0 bits (118), Expect = 8e-09
 Identities = 20/82 (24%), Positives = 35/82 (42%), Gaps = 6/82 (7%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
           +  GA    IC      P  T+ W +      P   ++      F+ +L+I +V  + +G
Sbjct: 14  VRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNGILTIRNVQPSDAG 67

Query: 265 EYTCVASNTAAQARYSSKLQVK 286
            Y C  SN  A  + ++ L V+
Sbjct: 68  TYVCTGSNMFAMDQGTATLHVQ 89

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.8 bits (102), Expect = 1e-06
 Identities = 22/93 (23%), Positives = 33/93 (35%), Gaps = 12/93 (12%)

Query: 2  PPILTYSFIE-QTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
          P ++T      Q+++PG  V+  C A S +P   + WT                  S   
Sbjct: 1  PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP----------SRAM 50

Query: 60 DVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
          D    + I +V   D G Y C   N     + T
Sbjct: 51 DFNGILTIRNVQPSDAGTYVCTGSNMFAMDQGT 83

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 49.9 bits (118), Expect = 1e-08
 Identities = 19/90 (21%), Positives = 34/90 (37%), Gaps = 5/90 (5%)

Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
          P          +  G + +  C    +  P + W  D  EL  + +++     + +    
Sbjct: 2  PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGNDY---- 57

Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            + I+ V  +D GEY   A+N  GT E  
Sbjct: 58 -GLTINRVKGDDKGEYTVRAKNSYGTKEEI 86

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 44.5 bits (104), Expect = 8e-07
 Identities = 21/80 (26%), Positives = 26/80 (32%), Gaps = 2/80 (2%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG      C V     P  + W KD + L            +   L +IN V     GEY
Sbjct: 15  EGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYNGNDYGL-TINRVKGDDKGEY 72

Query: 267 TCVASNTAAQARYSSKLQVK 286
           T  A N+         L V 
Sbjct: 73  TVRAKNSYGTKEEIVFLNVT 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 49.5 bits (117), Expect = 1e-08
 Identities = 13/77 (16%), Positives = 23/77 (29%), Gaps = 6/77 (7%)

Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
           Q  + G    + C    +  P I W             ++ + V       +++ I  +
Sbjct: 10 PQEFKEGEDAVIVCDVVSSLPPTIIW------KHKGRDVILKKDVRFIVLSNNYLQIRGI 63

Query: 71 TVEDGGEYACVAENRAG 87
             D G Y C     A 
Sbjct: 64 KKTDEGTYRCEGRILAR 80

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 42.2 bits (98), Expect = 4e-06
 Identities = 18/79 (22%), Positives = 26/79 (32%), Gaps = 3/79 (3%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG    ++C V     P TI W   G+ +  +  V    L +      I  +     G Y
Sbjct: 15  EGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQ--IRGIKKTDEGTY 71

Query: 267 TCVASNTAAQARYSSKLQV 285
            C     A        +QV
Sbjct: 72  RCEGRILARGEINFKDIQV 90

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.8 bits (117), Expect = 1e-08
 Identities = 17/99 (17%), Positives = 36/99 (36%), Gaps = 8/99 (8%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD- 60
           P I++ +     +  G  + L C  +G  +    W  +G  +  ++  +   + S     
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 61  ------VISHVNISHVTVED-GGEYACVAENRAGTCEIT 92
                 +I+ +NIS +        + C A+N  G     
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAY 100

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.4 bits (77), Expect = 0.003
 Identities = 24/105 (22%), Positives = 39/105 (37%), Gaps = 13/105 (12%)

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSF--- 249
           P I S A     +  G++ ++IC VT G       W  +G  +    PV   D  S    
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENP 60

Query: 250 --------SSLLSINSVSAAHSG-EYTCVASNTAAQARYSSKLQV 285
                    ++L+I+ + +      +TC A NT        +L  
Sbjct: 61  ANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 1e-08
 Identities = 16/73 (21%), Positives = 29/73 (39%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            +     GNP P + W  +G  L  +        V+ H +    + + + T  + G+Y 
Sbjct: 19 WCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYT 78

Query: 80 CVAENRAGTCEIT 92
           +A+N  G  E  
Sbjct: 79 LIAKNEYGKDEKQ 91

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 18/104 (17%), Positives = 38/104 (36%), Gaps = 12/104 (11%)

Query: 186 VHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP----RFPV 241
           VH     P I     P           +   V  G+P   ++W  +G  L+        +
Sbjct: 1   VH---FAPTITFLESP----TSDHHWCIPFTVK-GNPKPALQWFYNGAILNESKYICTKI 52

Query: 242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           +V++   +   L +++ +  ++G+YT +A N   +         
Sbjct: 53  HVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 49.1 bits (116), Expect = 2e-08
 Identities = 26/90 (28%), Positives = 37/90 (41%), Gaps = 9/90 (10%)

Query: 3  PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI 62
          P       +     G  +   C+ASG P P + W  DG  L + NR  +           
Sbjct: 2  PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVSGG-------- 53

Query: 63 SHVNISHVTVEDGGEYACVAENRAGTCEIT 92
            +  S + +ED G Y CVAEN+ GT   +
Sbjct: 54 -ELRFSKLVLEDSGMYQCVAENKHGTVYAS 82

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 44.9 bits (105), Expect = 4e-07
 Identities = 24/81 (29%), Positives = 37/81 (45%), Gaps = 6/81 (7%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G+  R  C  + G P   +RWL+DG+PL+ +  + V         L  + +    SG 
Sbjct: 14  DIGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEV-----SGGELRFSKLVLEDSGM 67

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y CVA N       S++L V+
Sbjct: 68  YQCVAENKHGTVYASAELTVQ 88

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 47.2 bits (111), Expect = 7e-08
 Identities = 24/90 (26%), Positives = 30/90 (33%), Gaps = 9/90 (10%)

Query: 2  PPILTYSFIEQTLQPGPA---VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
           P+            G A   V+L C A  NP     W ++G EL               
Sbjct: 4  GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRY------R 57

Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAGT 88
                V  + V  +D G Y CVA N  GT
Sbjct: 58 LVAGDLVISNPVKAKDAGSYQCVATNARGT 87

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 39.9 bits (92), Expect = 3e-05
 Identities = 18/64 (28%), Positives = 23/64 (35%), Gaps = 3/64 (4%)

Query: 215 CGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
           C     +PP T RW  +G  L                L+  N V A  +G Y CVA+N  
Sbjct: 29  CRAR-ANPPATYRWKMNGTELKMGPDSRYRL--VAGDLVISNPVKAKDAGSYQCVATNAR 85

Query: 275 AQAR 278
               
Sbjct: 86  GTVV 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 4/81 (4%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T   G  V L+C  S     ++ W  +G E+    +    ++          + I   T
Sbjct: 10 TTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKS---RYRIRVEGKKHILIIEGAT 65

Query: 72 VEDGGEYACVAENRAGTCEIT 92
            D  EY+ +      + +++
Sbjct: 66 KADAAEYSVMTTGGQSSAKLS 86

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 14/81 (17%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
             G R  + C V+  D  +      +     P+    +   +    +L I   + A + E
Sbjct: 13  YCGERVELECEVSEDDANVKWFKNGEEIIPGPKSRYRIRV-EGKKHILIIEGATKADAAE 71

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y+ + +   + A+    L V 
Sbjct: 72  YSVMTTGGQSSAK----LSVD 88

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.2 bits (108), Expect = 2e-07
 Identities = 14/85 (16%), Positives = 27/85 (31%), Gaps = 8/85 (9%)

Query: 8  SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNI 67
          S+ +   + G    LKC    N                 N  +  +          ++ I
Sbjct: 3  SYRQHFFKHGGTAELKCSQKSNLARVFWKF--------QNGVLKAESPKYGLMGRKNLLI 54

Query: 68 SHVTVEDGGEYACVAENRAGTCEIT 92
           +++  D G Y C++E R     + 
Sbjct: 55 FNLSEGDSGVYQCLSEERVKNKTVF 79

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.0 bits (108), Expect = 2e-07
 Identities = 20/98 (20%), Positives = 35/98 (35%), Gaps = 6/98 (6%)

Query: 189 EKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
           EK     +    P   + +G + R+   +   D    ++WLK+G+ +       + +   
Sbjct: 2   EKKSTAFQKKLEPAYQVSKGHKIRLTVEL--ADHDAEVKWLKNGQEIQMSGSKYIFESIG 59

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
               L+I+  S A    Y CV             L VK
Sbjct: 60  AKRTLTISQCSLADDAAYQCVVGGEKCSTE----LFVK 93

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.8 bits (105), Expect = 6e-07
 Identities = 13/81 (16%), Positives = 27/81 (33%), Gaps = 5/81 (6%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +  G  + L    +     ++ W  +G E+  +    I +           + IS  +
Sbjct: 16 YQVSKGHKIRLTVELAD-HDAEVKWLKNGQEIQMSGSKYIFE----SIGAKRTLTISQCS 70

Query: 72 VEDGGEYACVAENRAGTCEIT 92
          + D   Y CV      + E+ 
Sbjct: 71 LADDAAYQCVVGGEKCSTELF 91

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.2 bits (106), Expect = 4e-07
 Identities = 21/87 (24%), Positives = 32/87 (36%), Gaps = 9/87 (10%)

Query: 205 LPEGARTRVICGVTH-----GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS 259
           LP      ++C          +    ++W KD KPL           D     L + +V+
Sbjct: 11  LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDR----LIVMNVA 66

Query: 260 AAHSGEYTCVASNTAAQARYSSKLQVK 286
             H G YTC AS T    +Y     ++
Sbjct: 67  EKHRGNYTCHASYTYLGKQYPITRVIE 93

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 23/87 (26%), Gaps = 14/87 (16%)

Query: 12 QTLQPGPAVSLKC------IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHV 65
          Q L       L C          N  P + W  D   L  +N    G            +
Sbjct: 9  QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV--------KDRL 60

Query: 66 NISHVTVEDGGEYACVAENRAGTCEIT 92
           + +V  +  G Y C A       +  
Sbjct: 61 IVMNVAEKHRGNYTCHASYTYLGKQYP 87

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-07
 Identities = 15/87 (17%), Positives = 27/87 (31%), Gaps = 5/87 (5%)

Query: 11 EQTLQPGPAVSLKCI---ASGNPTPDIGWTLDGFELPTNNRFV--IGQFVSGHGDVISHV 65
             L     +   CI     G P P + W  +G  L   +       +  +        +
Sbjct: 6  SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCL 65

Query: 66 NISHVTVEDGGEYACVAENRAGTCEIT 92
           ++  T  + G Y  +A N  G    +
Sbjct: 66 RLNQPTHVNNGNYTLLAANPFGQASAS 92

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 45.3 bits (106), Expect = 5e-07
 Identities = 20/90 (22%), Positives = 32/90 (35%), Gaps = 8/90 (8%)

Query: 205 LPEGARTRVIC--GVTHGDPPLTIRWLKDGKPLSPR------FPVNVSDLDSFSSLLSIN 256
           L         C      G P  ++RWL +G  L+        F    ++       L +N
Sbjct: 9   LHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLN 68

Query: 257 SVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
             +  ++G YT +A+N   QA  S      
Sbjct: 69  QPTHVNNGNYTLLAANPFGQASASIMAAFM 98

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.5 bits (104), Expect = 7e-07
 Identities = 14/80 (17%), Positives = 19/80 (23%), Gaps = 1/80 (1%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
                    C +   +   TI W KD                    L          SG 
Sbjct: 15  SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLW-FVPAKVEDSGH 73

Query: 266 YTCVASNTAAQARYSSKLQV 285
           Y CV  N++   R     + 
Sbjct: 74  YYCVVRNSSYCLRIKISAKF 93

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 16/84 (19%), Positives = 23/84 (27%), Gaps = 6/84 (7%)

Query: 10 IEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNIS 68
          I             C +        I W  D  + P +        +  H + +      
Sbjct: 10 IILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQA--SRIHQHKEKLWF---V 64

Query: 69 HVTVEDGGEYACVAENRAGTCEIT 92
             VED G Y CV  N +    I 
Sbjct: 65 PAKVEDSGHYYCVVRNSSYCLRIK 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.7 bits (102), Expect = 1e-06
 Identities = 15/80 (18%), Positives = 27/80 (33%), Gaps = 3/80 (3%)

Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV 70
          +   + G    + C+   NP     +  +G ++  N    I +     G     +     
Sbjct: 12 DMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSG---KRLLFKTT 68

Query: 71 TVEDGGEYACVAENRAGTCE 90
            ED G Y C  +N  G  +
Sbjct: 69 LPEDEGVYTCEVDNGVGKPQ 88

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.1 bits (90), Expect = 6e-05
 Identities = 18/81 (22%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS-SLLSINSVSAAHSGE 265
            G  T + C     +P     + K+GK ++      ++  +  S   L   +      G 
Sbjct: 17  AGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGV 75

Query: 266 YTCVASNTAAQAR-YSSKLQV 285
           YTC   N   + + +S KL V
Sbjct: 76  YTCEVDNGVGKPQKHSLKLTV 96

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.4 bits (101), Expect = 2e-06
 Identities = 14/87 (16%), Positives = 23/87 (26%), Gaps = 6/87 (6%)

Query: 191 VPPKIESFAFPFDGL--PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS 248
            P +  +       L    G    + C     +   T+ W+                   
Sbjct: 2   APRRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM--- 58

Query: 249 FSSLLSINSVSAAHSGEYTCVASNTAA 275
               L + SV    SG Y+C  +   A
Sbjct: 59  -GRRLLLRSVQLHDSGNYSCYRAGRPA 84

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.7 bits (94), Expect = 1e-05
 Identities = 16/88 (18%), Positives = 26/88 (29%), Gaps = 9/88 (10%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD 60
           P    +    T  PG +V+L C          + W L      ++     G        
Sbjct: 6  CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGMG------ 59

Query: 61 VISHVNISHVTVEDGGEYACVAENRAGT 88
              + +  V + D G Y+C    R   
Sbjct: 60 --RRLLLRSVQLHDSGNYSCYRAGRPAG 85

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 16/87 (18%), Positives = 21/87 (24%), Gaps = 5/87 (5%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P+L     E   +      L+CI  GN            +                   
Sbjct: 2  YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEG--- 58

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGT 88
             +        D G Y C AE  AG 
Sbjct: 59 --SLVFLRPQASDEGHYQCFAETPAGV 83

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.1 bits (87), Expect = 1e-04
 Identities = 20/81 (24%), Positives = 28/81 (34%), Gaps = 3/81 (3%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
            E   T + C +   D  +   W KDGK  + +        D  S  L      A+  G 
Sbjct: 15  RENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALRKDEGS--LVFLRPQASDEGH 72

Query: 266 YTCVASNTAAQARYSSKLQVK 286
           Y C A   A  A  S  +  +
Sbjct: 73  YQCFAETPAGVAS-SRVISFR 92

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.5 bits (101), Expect = 2e-06
 Identities = 17/101 (16%), Positives = 31/101 (30%), Gaps = 7/101 (6%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD------ 245
           PP++++       + EG    ++C      P     W K                     
Sbjct: 2   PPRVKAVKSSEH-INEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSS 60

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
               S L   N    A  G+Y C  +++    +    L+V+
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRVR 101

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.4 bits (98), Expect = 5e-06
 Identities = 14/98 (14%), Positives = 28/98 (28%), Gaps = 11/98 (11%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-------DIGWTLDGFELPTNNRFVIGQF 54
          PP +      + +  G    L C +   P                     + +RF +   
Sbjct: 2  PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 55 VSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
                 I ++N+        G+Y C   +  G+ +  
Sbjct: 62 QGRSELHIENLNMEADP----GQYRCNGTSSKGSDQAI 95

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.3 bits (101), Expect = 2e-06
 Identities = 15/104 (14%), Positives = 31/104 (29%), Gaps = 9/104 (8%)

Query: 1   TPPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
           TP  +  + +      G  ++L+C   G  P   +   L            + +  +   
Sbjct: 3   TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVL------LRGEKELKREPAVGE 56

Query: 60  DVISHVNISHVTVEDGGEYACVAENRAGT--CEITPYDSGPYLI 101
                  +       G +++C  E        E+    S PY +
Sbjct: 57  PAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLELFENTSAPYQL 100

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.8 bits (97), Expect = 7e-06
 Identities = 17/85 (20%), Positives = 28/85 (32%), Gaps = 7/85 (8%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP--LTIRWLKDGKPLSPRFPVNVSDLD 247
             P ++E    P    P G +  + C V  G P   LT+  L+  K L     V      
Sbjct: 2   WTPERVELAPLPSW-QPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAVGEPA-- 58

Query: 248 SFSSLLSINSVSAAHSGEYTCVASN 272
                 ++      H  +++C    
Sbjct: 59  --EVTTTVLVRRDHHGAQFSCRTEL 81

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.7 bits (99), Expect = 4e-06
 Identities = 10/86 (11%), Positives = 24/86 (27%), Gaps = 3/86 (3%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHG--DPPLTIRWLKDGKPLSPRFPVNVSDLDSF 249
           PP+          +  G    + C V        LT+   +  + L        +     
Sbjct: 1   PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQE 60

Query: 250 SS-LLSINSVSAAHSGEYTCVASNTA 274
           ++   +  +        ++C+A    
Sbjct: 61  ATATFNSTADREDGHRNFSCLAVLDL 86

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]} Length = 106

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.1 bits (95), Expect = 2e-05
 Identities = 7/89 (7%), Positives = 23/89 (25%), Gaps = 6/89 (6%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASG---NPTPDIGWTLDGFELPTNNRFVIGQFVSGH 58
          P  +  +     +  G + +++C         +  +        L               
Sbjct: 2  PRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPA---P 58

Query: 59 GDVISHVNISHVTVEDGGEYACVAENRAG 87
           +  +  N +    +    ++C+A     
Sbjct: 59 QEATATFNSTADREDGHRNFSCLAVLDLM 87

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 12/102 (11%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVIC--GVTHGDPPLTIRWLKDGKPLSP---RFPVNVS 244
             PP++ S       L E       C   V  G+PP T+ WL +G+PL            
Sbjct: 3   YYPPRVVS-------LEEPELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ 55

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           + +     L  N  +  ++G YT +A N    A  +      
Sbjct: 56  EGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHFL 97

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 16/73 (21%), Positives = 29/73 (39%), Gaps = 1/73 (1%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA 79
            ++ +  GNP P + W  +G  L  +    +  +  G       +  +  T  + G Y 
Sbjct: 20 HCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISE-GCLLFNKPTHYNNGNYT 78

Query: 80 CVAENRAGTCEIT 92
           +A+N  GT   T
Sbjct: 79 LIAKNPLGTANQT 91

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 41.9 bits (97), Expect = 7e-06
 Identities = 8/98 (8%), Positives = 26/98 (26%), Gaps = 7/98 (7%)

Query: 2   PPILTYSFIEQTLQPGPAVSLKCIASGNP---TPDIGWTLDGFELPTNNR----FVIGQF 54
             +      +  +  G +++     +G      P + W    +   ++       +   +
Sbjct: 4   IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSY 63

Query: 55  VSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
                  +  ++I+       G Y C    +       
Sbjct: 64  DRASKVYLFELHITDAQPAFTGGYRCEVSTKDKFDCSN 101

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.1 bits (87), Expect = 2e-04
 Identities = 15/92 (16%), Positives = 20/92 (21%), Gaps = 12/92 (13%)

Query: 206 PEGARTRVICGVTHGDPPL---TIRWLKDGKPLSPRFPVNVSDL--------DSFSSLLS 254
             G           G   L    ++W K               L          +   L 
Sbjct: 17  TVGGSITFSA-RVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELH 75

Query: 255 INSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           I     A +G Y C  S        +  L V 
Sbjct: 76  ITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH 107

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (92), Expect = 2e-05
 Identities = 20/88 (22%), Positives = 30/88 (34%), Gaps = 2/88 (2%)

Query: 65  VNISHVTVEDGGE--YACVAENRAGTCEITPYDSGPYLIAWFKDGRQIPGRTSSTSLVIN 122
           + I +V V  G    + C A  R    +           A  K+ +    R    S  + 
Sbjct: 6   LRIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVV 65

Query: 123 PVGREDRGIYQCIARRSDGDVAQGSAEL 150
              + D G Y+C+ R   G      AEL
Sbjct: 66  NTTKRDAGKYRCMIRTEGGVGISNYAEL 93

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]} Length = 96

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 6e-05
 Identities = 12/83 (14%), Positives = 24/83 (28%), Gaps = 4/83 (4%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL--DSFSSLLSINSVSAAHSG 264
            G      C    G      R    G  +       +       F +  ++ + +   +G
Sbjct: 15  AGQFATFQCSAI-GRTVAGDRLWLQGIDVRDAPLKEIKVTSSRRFIASFNVVNTTKRDAG 73

Query: 265 EYTCVASNTAAQARYSS-KLQVK 286
           +Y C+          +  +L VK
Sbjct: 74  KYRCMIRTEGGVGISNYAELVVK 96

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.0 bits (93), Expect = 3e-05
 Identities = 18/87 (20%), Positives = 31/87 (35%), Gaps = 5/87 (5%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF----PVNVSD 245
           K  P +  F    + L     T V          +T+ W  DG P++       P   S+
Sbjct: 3   KSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSN 62

Query: 246 -LDSFSSLLSINSVSAAHSGEYTCVAS 271
                SS L++ + +      Y+C  +
Sbjct: 63  NKYMASSYLTLTARAWERHSSYSCQVT 89

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.6 bits (91), Expect = 4e-05
 Identities = 14/91 (15%), Positives = 29/91 (31%), Gaps = 5/91 (5%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV 61
           P +  +  +  ++ G   +L+    G P P   WT     +  +   +  + +      
Sbjct: 2  KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWT-----VGDSGAALAPELLVDAKSS 56

Query: 62 ISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
           + +        D G Y    +N  G  E  
Sbjct: 57 TTSIFFPSAKRADSGNYKLKVKNELGEDEAI 87

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 17/96 (17%), Positives = 31/96 (32%), Gaps = 3/96 (3%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
           + PKI + +     +  G    +      G P  T  W       +    + V    S +
Sbjct: 1   LKPKILTASRKIK-IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDA-KSST 57

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           + +   S   A SG Y     N   +     ++ V+
Sbjct: 58  TSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIVQ 93

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

 Score = 39.6 bits (92), Expect = 4e-05
 Identities = 18/87 (20%), Positives = 30/87 (34%), Gaps = 6/87 (6%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRF----PVNVS 244
           K  PK+  F    + L     T ++C V    P   T+ W  +G  ++       P    
Sbjct: 3   KSSPKVTVFPPSPEELRTNKAT-LVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQG 61

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVAS 271
                SS LS+ +         +C  +
Sbjct: 62  QNYMTSSYLSLTADQWKSHNRVSCQVT 88

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.8 bits (89), Expect = 5e-05
 Identities = 19/95 (20%), Positives = 34/95 (35%), Gaps = 16/95 (16%)

Query: 192 PPKIESFAFPFDG-LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
            P+++    P +   PE ++   +C    G+P   ++ LKDG    P             
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPIGE---------- 50

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
                 +V+    G Y C A +T  +      + V
Sbjct: 51  ----SVTVTRDLEGTYLCRARSTQGEVTREVTVNV 81

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 15/81 (18%), Positives = 21/81 (25%), Gaps = 18/81 (22%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
           T       +  C A GNP P++    D                      +       VT
Sbjct: 14 WTWPENSQQTPMCQAWGNPLPELKCLKD------------------GTFPLPIGESVTVT 55

Query: 72 VEDGGEYACVAENRAGTCEIT 92
           +  G Y C A +  G     
Sbjct: 56 RDLEGTYLCRARSTQGEVTRE 76

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.3 bits (90), Expect = 6e-05
 Identities = 20/103 (19%), Positives = 33/103 (32%), Gaps = 8/103 (7%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDS- 248
             PP I S          G + ++ C +    PP  I W      L        +     
Sbjct: 5   NGPPIISST--QTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETIS 62

Query: 249 ----FSSLLSINSVSAA-HSGEYTCVASNTAAQARYSSKLQVK 286
                 S L+I+++  A     Y C A N+        +L+ +
Sbjct: 63  TEEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKEQ 105

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 9e-05
 Identities = 22/94 (23%), Positives = 33/94 (35%), Gaps = 4/94 (4%)

Query: 2  PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFEL--PTNNRFVIGQFVSGHG 59
          PPI++ S   Q    G    +KC     P PD         +     +     + +S   
Sbjct: 7  PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEE 65

Query: 60 DVISHVNISHVTVE-DGGEYACVAENRAGTCEIT 92
           VIS + IS++        Y C A N  G+    
Sbjct: 66 GVISTLTISNIVRADFQTIYNCTAWNSFGSDTEI 99

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 38.2 bits (88), Expect = 1e-04
 Identities = 15/80 (18%), Positives = 31/80 (38%), Gaps = 7/80 (8%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
            G        +   +P +  +W   G+PL+      + +      L  +++     +GE 
Sbjct: 15  VGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDGKKHIL-ILHNCQLGMTGEV 71

Query: 267 TCVASNTAAQARYSSKLQVK 286
           +  A+N  + A     L+VK
Sbjct: 72  SFQAANAKSAAN----LKVK 87

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 13/81 (16%), Positives = 23/81 (28%), Gaps = 6/81 (7%)

Query: 12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVT 71
            +  G     +   S  P     W L G  L  +    I +    H      + + +  
Sbjct: 11 VEVFVGETAHFEIELS-EPDVHGQWKLKGQPLTASPDCEIIEDGKKH-----ILILHNCQ 64

Query: 72 VEDGGEYACVAENRAGTCEIT 92
          +   GE +  A N      + 
Sbjct: 65 LGMTGEVSFQAANAKSAANLK 85

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 14/78 (17%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 20 VSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVN-----ISHVTVED 74
          V+     S  P  ++ W     ++          F S    V          I ++T  D
Sbjct: 13 VTFHV-PSNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSLTIYNLTSSD 71

Query: 75 GGEYACVAENRAGTCEIT 92
            EY   + N   T +  
Sbjct: 72 EDEYEMESPNITDTMKFF 89

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.7 bits (76), Expect = 0.004
 Identities = 8/35 (22%), Positives = 18/35 (51%)

Query: 246 LDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYS 280
           LD+ S  L+I +++++   EY   + N     ++ 
Sbjct: 55  LDTVSGSLTIYNLTSSDEDEYEMESPNITDTMKFF 89

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.0 bits (85), Expect = 3e-04
 Identities = 20/87 (22%), Positives = 35/87 (40%), Gaps = 6/87 (6%)

Query: 191 VPPKIESFAFPFDGLPEGART-RVICGVTHGDPP-LTIRWLKDGKPLS----PRFPVNVS 244
            PP ++      DG      T +++C V+   P  + I WL+DG+ +             
Sbjct: 3   TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEG 62

Query: 245 DLDSFSSLLSINSVSAAHSGEYTCVAS 271
           +L S  S L+++         YTC  +
Sbjct: 63  ELASTQSELTLSQKHWLSDRTYTCQVT 89

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]} Length = 124

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.3 bits (85), Expect = 5e-04
 Identities = 17/126 (13%), Positives = 32/126 (25%), Gaps = 21/126 (16%)

Query: 164 VTAIDGEGLSIKCPVAGYPIE----EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTH 219
           +    GE   + C     P +    ++ W   P   +                       
Sbjct: 14  IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQ-----------------KVDQVI 56

Query: 220 GDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY 279
                   +      L  R     +DL S  + +++ ++  +  G Y C        A  
Sbjct: 57  ILYSGDKIYDDYYPDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANK 116

Query: 280 SSKLQV 285
              L V
Sbjct: 117 KIHLVV 122

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.1 bits (82), Expect = 5e-04
 Identities = 14/82 (17%), Positives = 25/82 (30%), Gaps = 11/82 (13%)

Query: 206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGE 265
           P  A  ++ C       P+TI W +    +    P               N      S  
Sbjct: 14  PPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAPSPSVL----------NVTGVTQSTM 63

Query: 266 YTCVASNTAAQARYSS-KLQVK 286
           ++C A N    A   +  + ++
Sbjct: 64  FSCEAHNLKGLASSRTATVHLQ 85

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]} Length = 85

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 33.4 bits (75), Expect = 0.004
 Identities = 15/59 (25%), Positives = 24/59 (40%), Gaps = 1/59 (1%)

Query: 94  YDSGPYLIAWFKDGRQIPGRTSSTSLVINPVGREDRGIYQCIARRSDGDVAQGSAELQL 152
               P  I W++   +I G   S S V+N  G     ++ C A    G  +  +A + L
Sbjct: 27  GPPEPVTIVWWRGTTKIGGPAPSPS-VLNVTGVTQSTMFSCEAHNLKGLASSRTATVHL 84

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.2 bits (82), Expect = 6e-04
 Identities = 19/95 (20%), Positives = 37/95 (38%), Gaps = 6/95 (6%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFS 250
           V P       P   +  GA  ++ C +   D   +++W      L           D+  
Sbjct: 1   VKPLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGAVQS------DTGR 54

Query: 251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
           S+L++ + S + +G   CV S      +++ +L V
Sbjct: 55  SVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLLV 89

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 113

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.6 bits (83), Expect = 6e-04
 Identities = 14/95 (14%), Positives = 23/95 (24%), Gaps = 11/95 (11%)

Query: 9  FIE----QTLQPGPAVSLKCIASGNP---TPDIGWTLDGFELPTNNRFVIGQ----FVSG 57
          FIE     T++ G  ++             P I W    +    +      Q    F   
Sbjct: 3  FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERH 62

Query: 58 HGDVISHVNISHVTVEDGGEYACVAENRAGTCEIT 92
                 + I        G Y C    +      +
Sbjct: 63 SRVYTFEMQIIKAKDNFAGNYRCEVTYKDKFDSCS 97

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]} Length = 88

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

 Score = 35.3 bits (80), Expect = 0.001
 Identities = 14/83 (16%), Positives = 26/83 (31%), Gaps = 10/83 (12%)

Query: 205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG 264
             EG    + C      P + + + ++GK                    SI   + +HSG
Sbjct: 12  FQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKF---------SRSDPNFSIPQANHSHSG 62

Query: 265 EYTCVASNTAAQARYSS-KLQVK 286
           +Y C  +            + V+
Sbjct: 63  DYHCTGNIGYTLYSSKPVTITVQ 85

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]} Length = 99

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (81), Expect = 0.001
 Identities = 13/93 (13%), Positives = 26/93 (27%), Gaps = 2/93 (2%)

Query: 193 PKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSL 252
           P     A     +P     ++ C           + +             +   +     
Sbjct: 6   PMPFISAKSSPVIPLDGSVKIQCQAIREA--YLTQLMIIKNSTYREIGRRLKFWNETDPE 63

Query: 253 LSINSVSAAHSGEYTCVASNTAAQARYSSKLQV 285
             I+ + A  +G Y C       + RYS  L++
Sbjct: 64  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLEL 96

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.3 bits (81), Expect = 0.001
 Identities = 17/88 (19%), Positives = 30/88 (34%), Gaps = 7/88 (7%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLD- 247
           K  P +  F    + L     T ++C ++   P  +T+ W  D  P+             
Sbjct: 3   KAAPSVTLFPPSSEELQANKAT-LVCLISDFYPGAVTVAWKADSSPVKAGVETTTPSKQS 61

Query: 248 ----SFSSLLSINSVSAAHSGEYTCVAS 271
               + SS LS+          Y+C  +
Sbjct: 62  NNKYAASSYLSLTPEQWKSHRSYSCQVT 89

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.4 bits (80), Expect = 0.001
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 6/78 (7%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV------NVSDLDSFSSLLSINSVSA 260
           EG   ++ C + +  P   I W K      P   V        +  D       +     
Sbjct: 16  EGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDV 75

Query: 261 AHSGEYTCVASNTAAQAR 278
           +   +Y C A N A    
Sbjct: 76  SDIYKYVCTAKNAAVDEE 93

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 111

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 23/96 (23%), Positives = 33/96 (34%), Gaps = 8/96 (8%)

Query: 1  TPPILTYSFIEQTLQPGPAVSLKC-IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHG 59
            P  T+   E+T   G    L C + +  P P I W         N   V         
Sbjct: 4  ASPAKTH---EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD-VTDFDRRITA 59

Query: 60 DVISHVNISHVTVE---DGGEYACVAENRAGTCEIT 92
              ++  + VT E   D  +Y C A+N A   E+ 
Sbjct: 60 GPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVV 95

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (80), Expect = 0.001
 Identities = 17/81 (20%), Positives = 25/81 (30%), Gaps = 5/81 (6%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS 248
           K PP +   A P         + + C      PP L  R+L++G            + D 
Sbjct: 1   KEPPSMRLKARP----GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSGNCSTGPNGDG 56

Query: 249 FSSLLSINSVSAAHSGEYTCV 269
                S+  V       Y C 
Sbjct: 57  SFHAWSLLEVKRGDEHHYQCQ 77

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]} Length = 127

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

 Score = 35.5 bits (81), Expect = 0.001
 Identities = 15/93 (16%), Positives = 30/93 (32%), Gaps = 12/93 (12%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPL----------SPRF 239
            PP++  F      +    +  ++C  T   P  + + W  +GK +              
Sbjct: 3   FPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQ 62

Query: 240 PVNVSDLDSFSSLLSINSVSAAHSGE-YTCVAS 271
           P       S SS L +++    +    + C   
Sbjct: 63  PALNDSRYSLSSRLRVSATFWQNPRNHFRCQVQ 95

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]} Length = 108

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 15/102 (14%), Positives = 36/102 (35%), Gaps = 10/102 (9%)

Query: 191 VPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS---------PRFP 240
             P++     P + L       + C      P  + +RWL+  + L           + P
Sbjct: 3   FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEP 62

Query: 241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
              +   + +S+L + +        ++C+  + A    ++ K
Sbjct: 63  SQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALPLAFTQK 104

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

 Score = 35.0 bits (80), Expect = 0.002
 Identities = 19/96 (19%), Positives = 35/96 (36%), Gaps = 6/96 (6%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLS---PRFPVNVSD-L 246
            P++     P + + +   T + C VT   P  + + W  +GK         PV  SD  
Sbjct: 4   APQVYVLPPPEEEMTKKQVT-LTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGS 62

Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
               S L +   +      Y+C   +      +++K
Sbjct: 63  YFMYSKLRVEKKNWVERNSYSCSVVHEGLHNHHTTK 98

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 14/83 (16%), Positives = 28/83 (33%), Gaps = 5/83 (6%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDS 248
           +V P++    +P    P      ++C V    P  + +RW ++G+             + 
Sbjct: 2   RVYPEV--TVYPAKTQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNG 59

Query: 249 FSS--LLSINSVSAAHSGEYTCV 269
             +   L +          YTC 
Sbjct: 60  DWTFQTLVMLETVPRSGEVYTCQ 82

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.6 bits (79), Expect = 0.002
 Identities = 19/96 (19%), Positives = 37/96 (38%), Gaps = 6/96 (6%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVTHGDP-PLTIRWLKDGKPLS---PRFPVNVSD-L 246
            P++ +     D L +   + + C V    P  + + W  +G+P +      PV  SD  
Sbjct: 4   EPQVYTLPPSRDELTKNQVS-LTCLVKGFYPSDIAVEWESNGQPENNYKTTPPVLDSDGS 62

Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
               S L+++         ++C   + A    Y+ K
Sbjct: 63  FFLYSKLTVDKSRWQQGNVFSCSVMHEALHNHYTQK 98

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.7 bits (79), Expect = 0.003
 Identities = 17/92 (18%), Positives = 33/92 (35%), Gaps = 8/92 (8%)

Query: 190 KVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSP------RFPVN 242
           +  P++ +FA P        RT + C + +  P  ++++WL +   L        +    
Sbjct: 2   RAAPEVYAFATPEWPGSRDKRT-LACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKT 60

Query: 243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA 274
                   S L +         E+ C A + A
Sbjct: 61  KGSGFFVFSRLEVTRAEWEQKDEFICRAVHEA 92

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 80

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.0 bits (78), Expect = 0.003
 Identities = 15/63 (23%), Positives = 22/63 (34%), Gaps = 9/63 (14%)

Query: 208 GARTRVICGVTHGDPPLT-IRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           G++  + C +      +T  RWLK G  L         +             S    GEY
Sbjct: 12  GSKILLTCSLNDSATEVTGHRWLKGGVVLK--------EDALPGQKTEFKVDSDDQWGEY 63

Query: 267 TCV 269
           +CV
Sbjct: 64  SCV 66

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.0 bits (79), Expect = 0.003
 Identities = 17/123 (13%), Positives = 37/123 (30%), Gaps = 18/123 (14%)

Query: 164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPP 223
           + A+ G+   + C ++                 S               V+    +G   
Sbjct: 12  IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSR--------------VVHLYRNGKDQ 57

Query: 224 LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL 283
              +  +       R  +    +      L I +V  +  G YTC   + + Q   + +L
Sbjct: 58  DAEQAPEY----RGRTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVEL 113

Query: 284 QVK 286
           +V+
Sbjct: 114 KVE 116

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.6 bits (78), Expect = 0.003
 Identities = 17/74 (22%), Positives = 25/74 (33%), Gaps = 1/74 (1%)

Query: 207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEY 266
           EG      C      P L+ RWL +  P             +  +L  I    A+  G Y
Sbjct: 18  EGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNL-YIAKTEASDLGNY 76

Query: 267 TCVASNTAAQARYS 280
           +C A++       S
Sbjct: 77  SCFATSHIDFITKS 90

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 34.2 bits (78), Expect = 0.003
 Identities = 13/96 (13%), Positives = 36/96 (37%), Gaps = 6/96 (6%)

Query: 192 PPKIESFAFPFDGLPEGARTRVICGVT-HGDPPLTIRWLKDGKPLS----PRFPVNVSDL 246
            P++ +   P + + +   + + C +T      +T+ W  +G+P       +  ++    
Sbjct: 3   APQVYTIPPPLEQMAKDLVS-LTCMITDFFPEDITVEWQWNGQPAENYKNTQPIMDTDGS 61

Query: 247 DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK 282
               S L++   +      +TC   +      ++ K
Sbjct: 62  YFVYSKLNVQKSNWEAGNTFTCSVLHEGLHNHHTEK 97

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.3 bits (77), Expect = 0.003
 Identities = 19/79 (24%), Positives = 30/79 (37%), Gaps = 3/79 (3%)

Query: 11 EQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISH 69
          +  +  G +    C  +      DI W     E  + N+  I   V  + D  S + I +
Sbjct: 9  QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRI--SVVWNDDDSSTLTIYN 66

Query: 70 VTVEDGGEYACVAENRAGT 88
            ++D G Y CV     GT
Sbjct: 67 ANIDDAGIYKCVVTAEDGT 85

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 17/81 (20%), Positives = 27/81 (33%), Gaps = 3/81 (3%)

Query: 11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVI---SHVNI 67
          +  +    ++ L C  SG  +P + W            +           V    S +  
Sbjct: 10 DVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITF 69

Query: 68 SHVTVEDGGEYACVAENRAGT 88
          S VT +D GEY C+     G 
Sbjct: 70 SSVTRKDNGEYTCMVSEEGGQ 90

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.9 bits (76), Expect = 0.004
 Identities = 11/37 (29%), Positives = 19/37 (51%)

Query: 250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK 286
           SS ++ +SV+   +GEYTC+ S    Q      + + 
Sbjct: 64  SSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLT 100

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	286
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.75
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.72
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.71
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.71
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.68
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.67
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.67
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.65
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.65
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.65
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.64
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.64
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.64
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.64
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.63
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.62
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.62
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.62
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.62
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.61
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.61
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.6
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.6
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.59
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.59
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.58
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.58
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.58
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.57
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.57
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.57
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.57
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.57
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.56
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.55
d2avga1	110	Cardiac myosin binding protein C, different domain	99.55
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.55
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.55
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.54
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.54
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.54
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.54
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.53
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.53
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.53
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.51
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.51
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.51
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.5
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.5
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.5
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.5
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.49
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.49
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.49
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.49
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.49
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.49
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.48
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.48
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.48
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.47
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.47
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.46
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.46
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.46
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.46
d2avga1	110	Cardiac myosin binding protein C, different domain	99.45
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.45
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.45
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.44
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.44
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.44
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.44
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.44
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.43
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.43
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.43
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.42
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.42
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.42
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.42
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.42
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.41
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.41
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.4
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.4
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.38
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.36
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.35
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.33
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.33
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.32
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.32
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.29
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.28
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.26
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.25
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.24
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.24
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.21
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.16
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.14
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.98
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	98.96
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.83
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.67
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.66
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.64
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.62
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.61
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	98.6
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.59
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.57
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.56
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.56
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.55
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.54
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.49
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.49
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.45
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.43
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.43
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.43
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.42
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.42
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.42
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.42
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.42
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.42
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.42
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.41
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.4
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.4
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.39
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.39
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.38
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.36
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.36
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.35
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.35
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.34
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.33
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.32
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.31
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.31
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.31
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.31
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.3
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.3
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.3
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.3
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.3
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.29
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.29
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.28
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.28
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.27
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.27
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.27
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.27
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.27
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.27
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.27
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.27
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.26
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.26
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.25
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.25
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.24
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.24
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.24
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.23
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.23
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.23
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.22
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.22
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.21
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.21
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.2
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.2
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.2
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.19
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.19
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.18
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.18
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.18
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.18
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.17
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.17
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.17
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.16
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.14
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.13
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.13
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.13
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.13
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.12
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.12
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.11
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.11
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.11
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.1
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	98.1
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.1
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.1
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.09
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.09
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.09
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.09
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.08
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.08
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.08
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.08
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.07
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.07
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.07
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.07
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.06
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.06
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.06
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.06
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.06
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.05
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.05
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.04
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.04
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.04
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.04
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.04
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.04
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.03
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.03
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.03
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.02
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.02
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.02
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.01
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.01
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.0
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.0
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.0
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.0
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.0
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	97.99
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.97
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.97
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.96
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	97.96
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.96
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	97.94
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.94
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.93
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	97.92
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	97.92
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.92
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	97.92
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	97.91
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.91
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	97.91
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	97.91
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	97.9
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	97.9
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.9
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	97.9
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.88
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.88
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	97.87
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.86
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.85
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.85
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	97.85
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	97.83
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	97.83
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.82
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.82
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.82
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	97.81
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.81
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.81
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.8
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	97.79
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.79
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.78
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.78
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.78
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.77
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	97.77
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.77
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.77
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	97.75
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	97.75
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	97.75
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.74
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	97.74
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	97.74
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	97.74
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	97.74
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	97.73
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.73
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.72
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.72
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.72
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	97.72
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.72
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.71
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.71
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	97.71
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.71
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.71
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.7
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.7
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	97.69
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	97.69
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.68
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.67
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.66
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.63
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.63
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.63
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.63
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.62
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	97.62
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.61
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	97.61
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.61
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.61
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.6
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.6
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.6
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.58
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.58
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.57
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	97.57
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.57
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.57
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.57
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.55
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.54
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.54
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	97.53
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.53
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.53
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.52
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.52
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.52
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.52
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.5
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.45
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	97.45
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.45
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.43
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.43
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.41
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	97.41
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.39
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.39
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.38
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.38
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.36
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.35
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.35
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.33
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.32
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.31
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.31
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	97.3
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	97.27
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.23
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.21
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.2
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.18
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.15
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.12
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	97.11
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.08
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.08
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.07
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.05
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.04
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.04
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.0
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	96.99
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.98
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	96.97
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	96.95
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	96.93
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	96.92
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	96.91
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	96.89
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	96.88
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	96.86
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.85
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	96.84
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	96.84
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	96.84
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	96.78
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.78
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.77
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	96.75
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	96.73
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	96.71
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.71
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.66
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.65
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	96.64
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	96.63
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.62
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	96.62
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	96.6
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	96.6
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.59
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	96.58
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	96.58
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.57
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	96.57
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	96.57
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	96.56
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	96.55
d1hxma2	86	T-cell antigen receptor {Human (Homo sapiens), gam	96.53
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	96.51
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	96.5
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	96.5
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	96.49
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	96.47
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	96.47
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	96.47
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	96.46
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	96.46
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.45
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.44
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	96.42
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	96.4
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	96.35
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	96.34
d1sy6a1	81	CD3 gamma chain ectodomain fragment {Human (Homo s	96.34
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	96.33
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	96.33
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	96.32
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.29
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	96.29
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	96.29
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	96.27
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	96.26
d1jbja1	86	CD3 gamma chain ectodomain fragment {Mouse (Mus mu	96.26
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	96.26
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	96.24
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	96.24
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	96.23
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.19
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	96.17

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=5.5e-18  Score=117.23  Aligned_cols=87  Identities=25%  Similarity=0.479  Sum_probs=75.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+|||..|..+.++.+..    .+.....|.|.++..+|+|.|+|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~~~i~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDDNPVKESRHFQIDY----DEEGNCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCSSSEEEEE----CTTCEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeeeccccceeeEeEEE----ecCceeeeEecCCCHHhCEEEEEE
Confidence            6889999999999999999999999999999999999999998877775421    223345699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|....+
T Consensus        84 a~N~~G~~~~~   94 (102)
T d1fhga_          84 AVNSLGEATCT   94 (102)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCcEEEEE
Confidence            99999987543

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.75  E-value=4.8e-18  Score=116.64  Aligned_cols=87  Identities=23%  Similarity=0.331  Sum_probs=74.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|+.++|.|.+.|+|.|.++|+||+.+|..+.++....    ..+....|.|.++..+|+|.|+|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~~~i~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYW----PEDNVCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTEECCCCSSEEEEE----EETTEEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCceEEeeeeeeEEEe----ccceEEEEEeccCccccCEEEEEE
Confidence            6899999999999999999999999999999999999999998776654321    122234699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|.....
T Consensus        80 a~N~~G~~~~~   90 (98)
T d1g1ca_          80 AINIAGETSSH   90 (98)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCcEEEEE
Confidence            99999987543

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=5.7e-18  Score=113.98  Aligned_cols=80  Identities=33%  Similarity=0.615  Sum_probs=71.3

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.++|+|||.+|..+.++.+.     . +   .|.|.++..+|+|.|+|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g~~i~~~~~~~~~-----~-~---~L~i~~v~~~D~G~Y~C~a   72 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDGQPLASQNRIEVS-----G-G---ELRFSKLVLEDSGMYQCVA   72 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETTEECCCCSSEEEE-----T-T---EEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEeeccccccceeeee-----e-e---eEEEEeecccCCEEEEEEE
Confidence            78999999999999999999999999999999999999999887776542     1 1   4889999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|....
T Consensus        73 ~N~~G~~~~   81 (89)
T d1cs6a4          73 ENKHGTVYA   81 (89)
T ss_dssp             EETTEEEEE
T ss_pred             EeCCCEEEE
Confidence            999997654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=6.3e-18  Score=115.80  Aligned_cols=85  Identities=24%  Similarity=0.353  Sum_probs=73.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.|.|++||..|..+.++.+..    .+ ....|.|.++..+|+|.|+|.|
T Consensus         2 P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~l~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~C~a   76 (97)
T d1koaa1           2 PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRY----NG-NDYGLTINRVKGDDKGEYTVRA   76 (97)
T ss_dssp             CEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETTEECCSBTTBBCCC----ST-TEEEEEESCCCSGGGSCEEEEE
T ss_pred             CEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEeeeccceeeEEEEEe----cC-CeeEEEeCCCceecCEEEEEEE
Confidence            889999999999999999999999999999999999999998777765421    22 2346999999999999999999


Q ss_pred             EcCCEEEEEe
Q psy15667         83 ENRAGTCEIT   92 (286)
Q Consensus        83 ~n~~g~~~~~   92 (286)
                      .|..|.....
T Consensus        77 ~N~~G~~~~~   86 (97)
T d1koaa1          77 KNSYGTKEEI   86 (97)
T ss_dssp             EETTEEEEEE
T ss_pred             EECCCEEEEE
Confidence            9999987644

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.72  E-value=1.8e-17  Score=111.49  Aligned_cols=81  Identities=23%  Similarity=0.430  Sum_probs=68.2

Q ss_pred             CCCeeEeccccc-cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ++|.|...+.+. .+.+|+++.|.|.+.|.|.|.+.|++||.+|..+ ++.+      ..+   .|.|.++..+|+|.|+
T Consensus         1 saP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~~~i~~~-~~~~------~~~---~L~i~~v~~~d~G~Y~   70 (89)
T d1biha4           1 SAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG-RATV------TDS---GLVIKGVKNGDKGYYG   70 (89)
T ss_dssp             EEEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETTEECCSS-SEEE------ETT---EEEESSCCSTTCEEEE
T ss_pred             CCCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCCccCccc-cEEE------eee---eEEECCCChhhCEEEE
Confidence            479999888765 6899999999999999999999999999999654 4432      112   3889999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|....
T Consensus        71 C~a~N~~G~~~~   82 (89)
T d1biha4          71 CRATNEHGDKYF   82 (89)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCCEEEE
Confidence            999999997654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.71  E-value=1e-17  Score=113.82  Aligned_cols=86  Identities=16%  Similarity=0.276  Sum_probs=73.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.|...+.++.+.+|+++.|.|.+.|+|.|.+.|++|+..+..+.++.+..    .++ ...|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~i~~~~~~~~~~----~~~-~~~L~I~~~~~~D~G~Y~c~   76 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELLVDA----KSS-TTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSSCBCSTTSEEEE----ETT-EEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeeeceeeeeeeecc----ccc-ceeeccccccccccEEEEEE
Confidence            7899989999999999999999999999999999999999988777765422    122 34699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|..+..
T Consensus        77 a~N~~G~~~~~   87 (93)
T d1wiua_          77 VKNELGEDEAI   87 (93)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEECCCEEEEE
Confidence            99999987543

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.71  E-value=4.1e-17  Score=112.49  Aligned_cols=84  Identities=18%  Similarity=0.242  Sum_probs=72.5

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+.++.+.+|+++.|.|.+.|.|.|.+.|+||+..|..+.++.+..     ......|.|.++..+|+|.|+|.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~l~~~~~~~~~~-----~~~~~~L~I~~~~~~D~G~Y~C~a   75 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKVEN-----SENGSKLTILAARQEHCGCYTLLV   75 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSBCCCSSSEEEEE-----CSSEEEEEETTCCTTTCEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCceeeccCCcEEEEE-----ecceeEEEEeeCCcccCEEEEEEE
Confidence            678888889999999999999999999999999999999998877776532     122346999999999999999999


Q ss_pred             EcCCEEEEE
Q psy15667         83 ENRAGTCEI   91 (286)
Q Consensus        83 ~n~~g~~~~   91 (286)
                      .|..|..+.
T Consensus        76 ~N~~G~~~~   84 (101)
T d2cqva1          76 ENKLGSRQA   84 (101)
T ss_dssp             ECSSCEEEC
T ss_pred             EECCCEEEE
Confidence            999998653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.68  E-value=1.5e-16  Score=108.93  Aligned_cols=80  Identities=20%  Similarity=0.216  Sum_probs=62.5

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|.|.+.|+||+..+....+..+.........|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        17 ~~g~~v~l~c~v~-g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~L~V   95 (98)
T d1g1ca_          17 GQGSDAHFRVRVV-GKPDPECEWYKNGVKIERSDRIYWYWPEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV   95 (98)
T ss_dssp             ETTSCEEEEEEEE-EESCCEEEEEETTEECCCCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             cCCCcEEEEEEEE-EecCCeEEEEeCceEEeeeeeeEEEeccceEEEEEeccCccccCEEEEEEEEECCcEEEEEEEEEE
Confidence            3455555555543 556778889999999987766555443344568999999999999999999999999999999998


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      +
T Consensus        96 ~   96 (98)
T d1g1ca_          96 Q   96 (98)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.67  E-value=1.2e-16  Score=110.40  Aligned_cols=81  Identities=27%  Similarity=0.481  Sum_probs=65.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+.........|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        20 v~~G~~~~l~C~~~-g~P~p~v~W~k~~~~i~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~   98 (102)
T d1fhga_          20 VVEGSAARFDCKVE-GYPDPEVMWFKDDNPVKESRHFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELL   98 (102)
T ss_dssp             EETTSCEEEEEEEE-EESCCEEEEEETTEECCCSSSEEEEECTTCEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EecCCcEEEEEEEE-eccCCeEEEEeeeccccceeeEeEEEecCceeeeEecCCCHHhCEEEEEEEEECCcEEEEEEEEE
Confidence            34555555555553 56677889999999998877777655445567899999999999999999999999999999999


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        99 V~  100 (102)
T d1fhga_          99 VE  100 (102)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.67  E-value=3e-16  Score=105.37  Aligned_cols=74  Identities=34%  Similarity=0.614  Sum_probs=58.5

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +|+.+.|.|.+. |.|.|.+.|+|+|..+....++.+.     ...|.|.++..+|+|.|+|.|.|..|....++.|.|+
T Consensus        15 ~G~~~~l~C~~~-g~P~p~v~W~k~g~~i~~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          15 IGSDLRWSCVAS-GKPRPAVRWLRDGQPLASQNRIEVS-----GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             TTCCEEEECEEE-EESCCEEEEEETTEECCCCSSEEEE-----TTEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CCCcEEEEEEEE-EEcCCEEEEEEeeccccccceeeee-----eeeEEEEeecccCCEEEEEEEEeCCCEEEEEEEEEEE
Confidence            444444444442 4566778899999998777665543     3479999999999999999999999999999999985

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=1.4e-16  Score=109.64  Aligned_cols=87  Identities=32%  Similarity=0.534  Sum_probs=66.6

Q ss_pred             CCeeEeccc--cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFI--EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~--~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.|...+.  +.++..|+++.|.|.+.|.|.|.+.|++||..|............. ..  ...|.|.+++.+|+|.|+
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~-~~--~~~L~I~~v~~~D~G~Y~   79 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGEPIENEEEDDEKHIFS-DD--SSELTIRNVDKNDEAEYV   79 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTEECCCC--CCSSEEEC-TT--SCEEEECSCCGGGCEEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCcccccccccceeEEee-cC--ceEEEeCCCCcccCEEEE
Confidence            788875444  4578899999999999999999999999999987543322111111 11  135899999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|..+.
T Consensus        80 C~a~N~~G~~~~   91 (100)
T d1qz1a3          80 CIAENKAGEQDA   91 (100)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEECCCEEEE
Confidence            999999998654

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.65  E-value=3.2e-16  Score=106.26  Aligned_cols=80  Identities=18%  Similarity=0.185  Sum_probs=66.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|++..+....++.+... .....|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus        14 v~~G~~~~l~c~~~-g~P~p~v~W~~~~~~i~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~~~~~l~   91 (93)
T d1wiua_          14 IKAGFTHNLEVDFI-GAPDPTATWTVGDSGAALAPELLVDAK-SSTTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVI   91 (93)
T ss_dssp             ECSSBCCEEEEEEE-CCSSCEEEEECSSSSCBCSTTSEEEEE-TTEEEEECTTBCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE-EecCCeEEEEeeeeeceeeeeeeeccc-ccceeeccccccccccEEEEEEEEECCCEEEEEEEEE
Confidence            56677777777764 778888999999998877766665543 3356899999999999999999999999999999999


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        92 V~   93 (93)
T d1wiua_          92 VQ   93 (93)
T ss_dssp             EC
T ss_pred             EC
Confidence            86

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.5e-16  Score=103.36  Aligned_cols=73  Identities=22%  Similarity=0.378  Sum_probs=62.4

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.|...+.+..+.+|+++.|.|.+.|+|.| ++.|+|||.+|.....          .    .+.|.....+|+|.|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g~~i~~~~~----------~----~~~l~~~~~~d~G~Y~C~   67 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGTTKIGGPAP----------S----PSVLNVTGVTQSTMFSCE   67 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETTEECSCSEE----------S----SEEEEECCCSSCEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECCEECCCCCC----------c----ceEEecCCccccEEEEEE
Confidence            899999999999999999999999999998 8999999999865321          1    134666677899999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.|..|..
T Consensus        68 A~N~~G~~   75 (85)
T d1rhfa2          68 AHNLKGLA   75 (85)
T ss_dssp             EEETTEEE
T ss_pred             EEcCCCcE
Confidence            99999965

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.65  E-value=1e-16  Score=109.59  Aligned_cols=80  Identities=28%  Similarity=0.502  Sum_probs=62.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|||..+....+............|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        17 v~~G~~v~l~C~~~-g~P~p~i~W~kng~~l~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   95 (97)
T d3dara1          17 VPAANTVKFRCPAG-GNPMPTMRWLKNGKEFKQEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLD   95 (97)
T ss_dssp             ECTTCCEEEECCEE-EESCCEEEEEETTEECCGGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             ECCCCcEEEEEEEe-EECCCEEEEEECCEeccccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            55677777777653 56778899999999887654432222122346899999999999999999999999999999998


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        96 V   96 (97)
T d3dara1          96 V   96 (97)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=1.3e-16  Score=108.49  Aligned_cols=83  Identities=23%  Similarity=0.406  Sum_probs=68.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCe-eEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNR-FVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~-~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .+|.|...+.++.+.+|+.++|.|.+.|.|.| .+.|++||..|..+.. ...    . ..+  .+|.|.++..+|+|.|
T Consensus         1 k~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~----~-~~~--~~L~i~~v~~~D~G~Y   73 (94)
T d1biha1           1 KYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAAL----R-KDE--GSLVFLRPQASDEGHY   73 (94)
T ss_dssp             CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEE----C-TTS--CCEEESSCCGGGCEEE
T ss_pred             CCCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeee----c-ccc--eEEEEeccChhcCeEE
Confidence            47999999999999999999999999999876 7999999999875433 222    1 111  2488999999999999


Q ss_pred             EEEEEcCCEEEE
Q psy15667         79 ACVAENRAGTCE   90 (286)
Q Consensus        79 ~C~a~n~~g~~~   90 (286)
                      +|.|.|..|...
T Consensus        74 ~C~a~N~~G~~~   85 (94)
T d1biha1          74 QCFAETPAGVAS   85 (94)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCCCEEE
Confidence            999999999754

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=2.9e-16  Score=105.54  Aligned_cols=77  Identities=27%  Similarity=0.518  Sum_probs=65.0

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+..+.|.+.+.|+|++..+......   .   ..+.|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        13 ~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~---~---~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l   86 (89)
T d1gl4b_          13 SVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAM---D---FNGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATL   86 (89)
T ss_dssp             EECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEE---E---ETTEEEECSCCGGGCEEEEEEEECSSCEEEEEEEE
T ss_pred             EEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccE---e---eceEEEEecCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            36788888999988778888999999999877554321   1   13579999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        87 ~V~   89 (89)
T d1gl4b_          87 HVQ   89 (89)
T ss_dssp             EEC
T ss_pred             EEC
Confidence            996

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.64  E-value=6.9e-17  Score=109.11  Aligned_cols=80  Identities=28%  Similarity=0.452  Sum_probs=67.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      |...|.++.+.+|+++.|.|.+.|.|.|.+.|++||.+|..+.++.+..    . .....|.|.++..+|+|.|+|.|.|
T Consensus         2 ii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~l~~~~~~~~~~----~-~~~~~L~i~~v~~~D~G~Y~C~a~N   76 (91)
T d1tnna_           2 ILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQVTT----T-KYKSTFEISSVQASDEGNYSVVVEN   76 (91)
T ss_dssp             CSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSSTTCSSSSCEEEE----C-SSEEEEECSSCCSCCCEEEEEECBC
T ss_pred             EEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecccccccceeeee----e-cceeEEeecCCCHHHCEEEEEEEEE
Confidence            4557788999999999999999999999999999999998777664421    1 2234699999999999999999999


Q ss_pred             CCEEE
Q psy15667         85 RAGTC   89 (286)
Q Consensus        85 ~~g~~   89 (286)
                      ..|..
T Consensus        77 ~~G~~   81 (91)
T d1tnna_          77 SEGKQ   81 (91)
T ss_dssp             SSCBC
T ss_pred             CCCEE
Confidence            98864

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.64  E-value=3.6e-16  Score=105.48  Aligned_cols=79  Identities=29%  Similarity=0.492  Sum_probs=63.5

Q ss_pred             CCeeEec-cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYS-FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~-~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      ||.|... +.++.+.+|++++|.|.+.|+|.|.+.|+|++..+...  +.      ..+.   .|.|.+++.+|+|.|+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~--~~------~~~~---~L~I~~v~~~D~G~Y~C   72 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSK--WL------SSEP---LLHIQNVDFEDEGTYEC   72 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCC--CS------BSSS---EEEECSCCGGGCEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceE--ee------eeee---EEEeCCCCccCCEEEEE
Confidence            6778766 56778999999999999999999999999977654321  11      1111   48899999999999999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .|.|..|....
T Consensus        73 ~a~N~~G~~~~   83 (91)
T d1cs6a3          73 EAENIKGRDTY   83 (91)
T ss_dssp             EEEETTEEEEE
T ss_pred             EEEECCCEEEE
Confidence            99999998653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.6e-16  Score=105.51  Aligned_cols=79  Identities=27%  Similarity=0.474  Sum_probs=64.7

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      .|.++++.+|++++|.|.+.|.|.|.+.|+||+..|....+..+.   .........|.|.+++.+|+|.|+|.|.|..|
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g~~l~~~~~~~~~---~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G   78 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIP---VSEQHWIGFLSLKSVERSDAGRYWCQVEDGGE   78 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETTEECCSSEEEEEE---EETTEEEEEEEESSCCGGGCEEEEEEESSCTT
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEeecccccceeeeee---ecccCceeeEEECCCCcccCEEEEEEEEECCC
Confidence            356789999999999999999999999999999999876654332   11223345689999999999999999999887


Q ss_pred             EE
Q psy15667         88 TC   89 (286)
Q Consensus        88 ~~   89 (286)
                      ..
T Consensus        79 ~~   80 (91)
T d1rhfa1          79 TE   80 (91)
T ss_dssp             CE
T ss_pred             CE
Confidence            54

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.64  E-value=2.3e-16  Score=106.53  Aligned_cols=81  Identities=28%  Similarity=0.532  Sum_probs=67.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+. |.|.|.+.|+|+|..+....+..+... .....|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        10 ~v~~G~~~~l~C~~~-g~P~p~v~W~~~g~~l~~~~~~~~~~~-~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   87 (91)
T d1tnna_          10 TVYEGESARFSCDTD-GEPVPTVTWLRKGQVLSTSARHQVTTT-KYKSTFEISSVQASDEGNYSVVVENSEGKQEAEFTL   87 (91)
T ss_dssp             ECSSSSCCCEEEECC-CSSCCCCEEESSSSTTCSSSSCEEEEC-SSEEEEECSSCCSCCCEEEEEECBCSSCBCCEEEEE
T ss_pred             EEeCCCcEEEEEEEE-EEeCCeEEEEEeecccccccceeeeee-cceeEEeecCCCHHHCEEEEEEEEECCCEEEEEEEE
Confidence            366778888888764 778889999999999877766655443 346789999999999999999999999999999999


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        88 ~V~   90 (91)
T d1tnna_          88 TIQ   90 (91)
T ss_dssp             ECC
T ss_pred             EEE
Confidence            985

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.63  E-value=3.4e-16  Score=106.93  Aligned_cols=84  Identities=19%  Similarity=0.297  Sum_probs=65.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |...+...+.++.+|+++.|.|.+.|.|.|.+.|++||..+..+....+...   .......|.|.+++.+|+|.|+|.|
T Consensus         4 ~~p~~~~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~i~~~~~~~~~~~---~~~~~~~L~I~~~~~~D~G~Y~C~a   80 (97)
T d1biha3           4 PVPQYVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRH---NRTSGKRLLFKTTLPEDEGVYTCEV   80 (97)
T ss_dssp             CEEEEECCSEEEETTSCEEEEEEEECSSCCCCEEEETTEECCCCTTSSEESC---SSSTTSEEEESSCCGGGCEEEEEEE
T ss_pred             cCCeeCCCCEEEecCCeEEEEEEEEEecCCEEEEEEeeeeccccceeeeeee---eecCCCEEEEEeccccccEEEEEEE
Confidence            5556667888999999999999999999999999999999875443322111   1111135899999999999999999


Q ss_pred             EcCCEEE
Q psy15667         83 ENRAGTC   89 (286)
Q Consensus        83 ~n~~g~~   89 (286)
                      .|..|..
T Consensus        81 ~N~~G~~   87 (97)
T d1biha3          81 DNGVGKP   87 (97)
T ss_dssp             CCSSSSC
T ss_pred             EECCCcE
Confidence            9988753

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.62  E-value=3.6e-16  Score=106.79  Aligned_cols=76  Identities=26%  Similarity=0.506  Sum_probs=61.1

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +.+.+|+++.|.|.+.|+|.|.+.|++||.+|..+.++..... . .+.  ..|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        15 ~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~l~~~~~~~~~~~-~-~~~--~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   90 (97)
T d3dara1          15 HAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKV-R-NQH--WSLIMESVVPSDKGNYTCVVENEYGSINH   90 (97)
T ss_dssp             EEECTTCCEEEECCEEEESCCEEEEEETTEECCGGGSTTCCEE-E-GGG--TEEEECSCCGGGCEEEEEEEEETTEEEEE
T ss_pred             EEECCCCcEEEEEEEeEECCCEEEEEECCEeccccCceeeEEE-c-CCc--EEEEECCCCcccCEEEEEEEEECCCEEEE
Confidence            4688999999999999999999999999999976544322111 1 111  25899999999999999999999998654

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=1.4e-15  Score=104.61  Aligned_cols=79  Identities=25%  Similarity=0.370  Sum_probs=65.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+....++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        12 v~~G~~~~l~C~v~-g~p~p~v~W~k~~~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   89 (101)
T d2cqva1          12 VRAGESVELFGKVT-GTQPITCTWMKFRKQIQESEHMKVENS-ENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLT   89 (101)
T ss_dssp             EETTCCEEEEEEEE-SSSSCEEEEEESSSBCCCSSSEEEEEC-SSEEEEEETTCCTTTCEEEEEEEECSSCEEECCEEEE
T ss_pred             EeCCCcEEEEEEEE-ecCCCEEEEEeCceeeccCCcEEEEEe-cceeEEEEeeCCcccCEEEEEEEEECCCEEEEEEEEE
Confidence            44566666666654 677888999999999988777776553 3356899999999999999999999999999999998


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        90 V   90 (101)
T d2cqva1          90 V   90 (101)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.62  E-value=4.3e-16  Score=107.85  Aligned_cols=87  Identities=16%  Similarity=0.231  Sum_probs=66.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCC-CCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .|.|...+.+.++.+|+++.|.|.+.|.| .|.|+|+|++..+..  +.+...  ...........|.|.++..+|+|.|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~--~~~~~~~~~~~L~I~~v~~~D~G~Y   80 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTS--WKEEKNISFFILHFEPVLPNDNGSY   80 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEE--EEECSSCEEEEEEESSCCGGGCEEE
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeee--EEecCCceEEEEEEccccHHHCCeE
Confidence            45677788888999999999999999998 589999999876532  222211  1111222334699999999999999


Q ss_pred             EEEEEcCCEEEE
Q psy15667         79 ACVAENRAGTCE   90 (286)
Q Consensus        79 ~C~a~n~~g~~~   90 (286)
                      +|.|.|..|...
T Consensus        81 ~C~A~N~~G~~~   92 (104)
T d2aw2a1          81 RCSANFQSNLIE   92 (104)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEcCCCeEE
Confidence            999999998764

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.62  E-value=2.6e-16  Score=106.39  Aligned_cols=79  Identities=16%  Similarity=0.261  Sum_probs=65.1

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...|.++.+.+|+++.|.|.+.|.|.|.+.|+++++.+....+..+..  ...+    .|.|.+++.+|+|.|+|.|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~i~~~~~~~~~~--~~~~----~L~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIV--LSNN----YLQIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEEGGGGCCTTEEE--CTTS----CEEETTCCGGGCEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcccccccceeeee--eeee----eEEECCCCHHhCEEEEEEE
Confidence            678889999999999999999999999999999999999987544332111  1111    3889999999999999999


Q ss_pred             EcCCE
Q psy15667         83 ENRAG   87 (286)
Q Consensus        83 ~n~~g   87 (286)
                      .|..+
T Consensus        76 ~n~~~   80 (92)
T d1epfa2          76 RILAR   80 (92)
T ss_dssp             EEGGG
T ss_pred             EECcC
Confidence            99654

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=7.3e-16  Score=105.26  Aligned_cols=80  Identities=26%  Similarity=0.338  Sum_probs=64.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+..+.++.+... .....|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus        13 v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~l~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   90 (97)
T d1koaa1          13 VGEGQSANFYCRVI-ASSPPVVTWHKDDRELKQSVKYMKRYN-GNDYGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLN   90 (97)
T ss_dssp             EETTSCEEEEEEEE-CSSCCEEEEEETTEECCSBTTBBCCCS-TTEEEEEESCCCSGGGSCEEEEEEETTEEEEEEECCE
T ss_pred             EeCCCcEEEEEEEE-EcCCCEEEEEEeeeccceeeEEEEEec-CCeeEEEeCCCceecCEEEEEEEEECCCEEEEEEEEE
Confidence            45666677777654 677889999999999987766655432 3456799999999999999999999999999999988


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus        91 V~   92 (97)
T d1koaa1          91 VT   92 (97)
T ss_dssp             EE
T ss_pred             Ee
Confidence            73

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.61  E-value=4.2e-16  Score=106.49  Aligned_cols=83  Identities=29%  Similarity=0.454  Sum_probs=67.3

Q ss_pred             CCeeEeccccccccCC---CcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPG---PAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G---~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +|.|...+.+.++.+|   ++++|.|.+.|.|.|.++|++||..|..+.+..+.   ...+   ..|.|..+..+|+|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng~~i~~~~~~~~~---~~~~---~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR---LVAG---DLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETTEECCCSTTSSEE---EETT---EEEEESCCHHHHCEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEeeeeccCCCCceEE---eeee---eEEEEecccccCCEEE
Confidence            6899999999988765   78999999999999999999999998754433221   1122   2477899999999999


Q ss_pred             EEEEEcCCEEEE
Q psy15667         79 ACVAENRAGTCE   90 (286)
Q Consensus        79 ~C~a~n~~g~~~   90 (286)
                      +|.|.|..|...
T Consensus        78 ~C~a~N~~G~~~   89 (97)
T d1cs6a1          78 QCVATNARGTVV   89 (97)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEECCCEEE
Confidence            999999999763

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=3.5e-16  Score=105.76  Aligned_cols=83  Identities=24%  Similarity=0.378  Sum_probs=68.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCe-EEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGG-EYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G-~Y~C   80 (286)
                      .|.|...+.+.++.+|+.+.|.|.+.|.|.|.+.|++++..+....+..       .......|.|.+++.+|+| .|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~-------~~~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------GGLPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC-------CCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee-------eeccceeEEEccccccccceEEEE
Confidence            6999999999999999999999999999999999999997775322211       1112245999999999999 7999


Q ss_pred             EEEcCCEEEEE
Q psy15667         81 VAENRAGTCEI   91 (286)
Q Consensus        81 ~a~n~~g~~~~   91 (286)
                      .|.|..|....
T Consensus        75 ~a~N~~G~~~~   85 (92)
T d2ifga1          75 WAENDVGRAEV   85 (92)
T ss_dssp             CCEETTEECCE
T ss_pred             EEEcCCCEEEE
Confidence            99999997643

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.60  E-value=1.8e-15  Score=101.50  Aligned_cols=75  Identities=31%  Similarity=0.534  Sum_probs=58.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+... ++.+.     ...|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus        15 v~~G~~~~l~C~~~-g~P~p~v~W~~~~~~i~~~-~~~~~-----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~   87 (89)
T d1biha4          15 VKQGQDVTIPCKVT-GLPAPNVVWSHNAKPLSGG-RATVT-----DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQ   87 (89)
T ss_dssp             ECTTSCEEEECEEE-EESCCCCEEEETTEECCSS-SEEEE-----TTEEEESSCCSTTCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCeEEEEEEEE-EeCCCEEEEEeCCccCccc-cEEEe-----eeeEEECCCChhhCEEEEEEEEECCCEEEEEEEEE
Confidence            45666666666653 6677788999999988543 33332     24699999999999999999999999999999998


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |.
T Consensus        88 V~   89 (89)
T d1biha4          88 VN   89 (89)
T ss_dssp             EC
T ss_pred             EC
Confidence            83

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=7.8e-16  Score=104.42  Aligned_cols=85  Identities=15%  Similarity=0.388  Sum_probs=66.9

Q ss_pred             CCCeeEeccccc-cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .+|.|...+.+. .+.+|+++.|.|.+. .|.|.+.|++||..|..+ .++.+..    .+ ....|.|.++..+|+|.|
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y   77 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES----IG-AKRTLTISQCSLADDAAY   77 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEE----ET-TEEEEEECSCSSSSCEEE
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeec----cC-CeEEeecCCCCceecEEE
Confidence            368888777654 799999999999984 589999999999999754 4454321    22 235699999999999999


Q ss_pred             EEEEEcCCEEEEE
Q psy15667         79 ACVAENRAGTCEI   91 (286)
Q Consensus        79 ~C~a~n~~g~~~~   91 (286)
                      +|.|.|..+.+.+
T Consensus        78 ~c~a~n~~~s~~l   90 (94)
T d1pd6a_          78 QCVVGGEKCSTEL   90 (94)
T ss_dssp             EEEETTEEECCEE
T ss_pred             EEEEeeEEEEEEE
Confidence            9999997666554

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.59  E-value=4.8e-15  Score=103.35  Aligned_cols=90  Identities=26%  Similarity=0.338  Sum_probs=63.7

Q ss_pred             CCeeEec-cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC----CCCee--Ee--ceEEecccceeEEEEEccccc
Q psy15667          2 PPILTYS-FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP----TNNRF--VI--GQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         2 ~p~~~~~-~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~----~~~~~--~~--~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      +|.|... +.++++.+|++++|.|.+.|.|.|.|.|+|++....    .+...  ..  .............|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            6888776 578999999999999999999999999999764421    11111  00  000111122235699999999


Q ss_pred             CCCeEEEEEEEcCCEEEEE
Q psy15667         73 EDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        73 ~D~G~Y~C~a~n~~g~~~~   91 (286)
                      +|+|.|+|.|.|..|....
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~  102 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFH  102 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEE
T ss_pred             HHCeEEEEEEEECCCEEEE
Confidence            9999999999999987653

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.59  E-value=3.8e-15  Score=99.91  Aligned_cols=80  Identities=24%  Similarity=0.358  Sum_probs=64.0

Q ss_pred             CCeeEec-cccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYS-FIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~-~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+... +.++.+.+|+++.|.|.+. +.|.|.+.|+|++..+.......      ..+    .|.|.+++.+|+|.|+
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~~~~~~------~~~----~L~i~~v~~~d~G~Y~   70 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMD------FNG----ILTIRNVQPSDAGTYV   70 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCCTTEEE------ETT----EEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeeccccEe------ece----EEEEecCCcccCEEEE
Confidence            5666665 5567899999999999997 67889999999988876554321      122    4899999999999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|..+.
T Consensus        71 C~a~N~~G~~~~   82 (89)
T d1gl4b_          71 CTGSNMFAMDQG   82 (89)
T ss_dssp             EEEECSSCEEEE
T ss_pred             EEEEECCCEEEE
Confidence            999999987653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.58  E-value=4e-15  Score=102.12  Aligned_cols=80  Identities=30%  Similarity=0.486  Sum_probs=60.4

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee-eecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +..|+.+.|.|.+. |.|.|.+.|+|+|..+........ .........|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        17 ~~~G~~v~l~C~~~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l   95 (100)
T d1qz1a3          17 ANLGQSVTLVCDAD-GFPEPTMSWTKDGEPIENEEEDDEKHIFSDDSSELTIRNVDKNDEAEYVCIAENKAGEQDASIHL   95 (100)
T ss_dssp             TTSCCCEEEEEEEE-EESCCEEEEEETTEECCCC--CCSSEEECTTSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EcCCCCEEEEEEEE-EecCCEEEEEeCCcccccccccceeEEeecCceEEEeCCCCcccCEEEEEEEEECCCEEEEEEEE
Confidence            45677777777764 677788999999998864432111 1112335689999999999999999999999999999999


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        96 ~V   97 (100)
T d1qz1a3          96 KV   97 (100)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=1.9e-15  Score=101.65  Aligned_cols=82  Identities=20%  Similarity=0.351  Sum_probs=66.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCe--eEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNR--FVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~--~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |...+.++++.+|+++.|.|.+ +.|.|.+.|++||.++..+.+  +.+.    ..+. ...|.|.++..+|+|.|+|.|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v-~~p~~~v~W~k~~~~~~~~~~~~~~~~----~~~~-~~~L~I~~v~~~D~G~Y~C~a   76 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEV-SEDDANVKWFKNGEEIIPGPKSRYRIR----VEGK-KHILIIEGATKADAAEYSVMT   76 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEEC-SSSSCCCEEEETTEECCCSTTCSEEEE----EETT-EEEEEEEEECTTTCSEEEEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEE-CCCCceEEEEEeecccCCCCCccEEEE----EeCC-ccEEEECccccccCEEEEEEE
Confidence            5567788899999999999998 568899999999999875543  3321    1222 346999999999999999999


Q ss_pred             EcCCEEEEEe
Q psy15667         83 ENRAGTCEIT   92 (286)
Q Consensus        83 ~n~~g~~~~~   92 (286)
                      .|..+.+.++
T Consensus        77 ~n~~~~a~l~   86 (90)
T d1x44a1          77 TGGQSSAKLS   86 (90)
T ss_dssp             TTEEEEEEEE
T ss_pred             ecceEEEEEE
Confidence            9988877654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.58  E-value=6.1e-15  Score=99.11  Aligned_cols=79  Identities=19%  Similarity=0.247  Sum_probs=62.1

Q ss_pred             eEeccccc-cccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQ-TLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~-~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |+..|.+. ++.+|+++.|.|.+.|.|.|.+.|++++..+.......        ......|.|.++..+|+|.|+|.|.
T Consensus         3 i~i~P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~--------~~~~~~L~I~~v~~~d~G~Y~C~a~   74 (90)
T d1vcaa2           3 IETTPESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTN--------EGTTSTLTMNPVSFGNEHSYLCTAT   74 (90)
T ss_dssp             EEEESSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCCSSEEEE--------ETTEEEEEESSCCGGGCSEEEEEEE
T ss_pred             EEEECCCcEEEECCCEEEEEEeccCCCCceEEEEecCccceeeeeee--------ecCCcEEEEecccccccceEEEEEE
Confidence            56667665 45799999999999999999999999887654332221        1112369999999999999999999


Q ss_pred             cCCEEEEE
Q psy15667         84 NRAGTCEI   91 (286)
Q Consensus        84 n~~g~~~~   91 (286)
                      |..|..+.
T Consensus        75 N~~g~~~~   82 (90)
T d1vcaa2          75 CESRKLEK   82 (90)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCEEEE
Confidence            99997654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.57  E-value=1.8e-16  Score=106.38  Aligned_cols=83  Identities=14%  Similarity=0.181  Sum_probs=69.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      .|...+.+.++.+|+++.|.|.+ +.|.|.+.|+|||.+|..+.++.+..    .+ ....|.|.+++.+|+|.|+|.|.
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~g~~i~~~~~~~~~~----~~-~~~~L~I~~~~~~D~G~Y~c~a~   76 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLKGQPLTASPDCEIIE----DG-KKHILILHNCQLGMTGEVSFQAA   76 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSSSCCCCSSSSCEEEE----CS-SCEEEECCSCCSCCCSEECCBCS
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEeeeecccceeEEEEe----ec-eeEEEEEcCCChhcCEEEEEEEC
Confidence            46677888999999999999997 57999999999999998888876532    22 23579999999999999999999


Q ss_pred             cCCEEEEEe
Q psy15667         84 NRAGTCEIT   92 (286)
Q Consensus        84 n~~g~~~~~   92 (286)
                      |..+.+.+.
T Consensus        77 n~~~sa~l~   85 (89)
T d1tiua_          77 NAKSAANLK   85 (89)
T ss_dssp             SCBCCEEEE
T ss_pred             ceEEEEEEE
Confidence            987776654

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=1.9e-14  Score=99.11  Aligned_cols=88  Identities=20%  Similarity=0.365  Sum_probs=67.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||.|....   ....+....+.|.+.|+|.|.+.|++||..|..+.++.+.............|.|.+++..|+|.|+|.
T Consensus         4 pP~it~~~---~~~~~~~~~i~~~v~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (103)
T d1wwbx_           4 APTITFLE---SPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLI   80 (103)
T ss_dssp             CCCCCCCC---CCCCCCEEEEEEEEECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCeeEEcC---CCccceeEEEEEEEEEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEE
Confidence            77775321   234678889999999999999999999999987666544322222223345699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|..+..
T Consensus        81 a~N~~G~~~~~   91 (103)
T d1wwbx_          81 AKNEYGKDEKQ   91 (103)
T ss_dssp             EECSSCEEEEE
T ss_pred             EeccCCEEEEE
Confidence            99999987643

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.57  E-value=2.2e-15  Score=101.55  Aligned_cols=72  Identities=25%  Similarity=0.473  Sum_probs=49.5

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +|+.+.|.|.+. |.|.|.+.|+|++.......       ....+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus        19 ~G~~v~l~C~~~-g~P~p~i~W~k~~~~~~~~~-------~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          19 TGQMVTLECFAF-GNPVPQIKWRKLDGSQTSKW-------LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             TTCCEEEECEEE-EESCCEEEEEECCSCCSCCC-------SBSSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             cCCcEEEEEEEE-EccCCEEEEEecccccceEe-------eeeeeEEEeCCCCccCCEEEEEEEEECCCEEEEEEEEEEE
Confidence            344444444432 44555666777554332211       0124579999999999999999999999999999999883

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.3e-15  Score=99.18  Aligned_cols=81  Identities=15%  Similarity=0.175  Sum_probs=62.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      |+.|.....+..+.+|+++.|.|.+. |.|.|.++|.+++.++..  ...        ......|.|.+++.+|+|.|+|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~--~~~--------~~~~~~L~i~~v~~~D~G~Y~C   72 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA--VQS--------DTGRSVLTVRNASLSAAGTRVC   72 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC--EEE--------ESSEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee--eec--------cCceeeEEcCccChhhCCcEEE
Confidence            55555444556789999999999875 889999999998876632  211        1112369999999999999999


Q ss_pred             EEEcCCEEEEEe
Q psy15667         81 VAENRAGTCEIT   92 (286)
Q Consensus        81 ~a~n~~g~~~~~   92 (286)
                      .|.|..|..+.+
T Consensus        73 ~Asn~~g~~~~s   84 (90)
T d1gsma1          73 VGSCGGRTFQHT   84 (90)
T ss_dssp             EEEETTEEEEEE
T ss_pred             EEEeCCCcEEEE
Confidence            999999976543

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=6.1e-15  Score=101.37  Aligned_cols=85  Identities=20%  Similarity=0.366  Sum_probs=66.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEc----CC--CCeeEeceEEecccceeEEEEEccccc-C
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFEL----PT--NNRFVIGQFVSGHGDVISHVNISHVTV-E   73 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l----~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~-~   73 (286)
                      ||.|...+.++.+.+|+.+.|.|.+.|.|.| .+.|++++..+    ..  ..++.+.    ..+ ....|.|.++.. +
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~----~~~-~~~~L~I~~v~~~~   76 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVS----SSQ-GRSELHIENLNMEA   76 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEE----EET-TEEEEEECSCCTTT
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEE----eCC-CEEEEEEecccccc
Confidence            8999999999999999999999999999988 79999976332    11  2234321    122 234699999985 7


Q ss_pred             CCeEEEEEEEcCCEEEEE
Q psy15667         74 DGGEYACVAENRAGTCEI   91 (286)
Q Consensus        74 D~G~Y~C~a~n~~g~~~~   91 (286)
                      |+|.|+|.|.|..|..+.
T Consensus        77 D~G~Y~C~A~N~~G~~~~   94 (101)
T d3b5ha1          77 DPGQYRCNGTSSKGSDQA   94 (101)
T ss_dssp             SSEEEEEEEEETTEEEEE
T ss_pred             CCEEEEEEEEECCCEEEE
Confidence            999999999999998754

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=5.9e-15  Score=98.96  Aligned_cols=75  Identities=23%  Similarity=0.380  Sum_probs=60.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+..|.|.+.++|++++..+..   ..   .....++|.|.+++.+|+|.|+|.|.|..|..+.++.|.
T Consensus        15 ~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~---~~---~~~~~~~L~i~~v~~~D~G~Y~C~Asn~~g~~~~s~~l~   88 (90)
T d1gsma1          15 VALGASRQLTCRLACADRGASVQWRGLDTSLGA---VQ---SDTGRSVLTVRNASLSAAGTRVCVGSCGGRTFQHTVQLL   88 (90)
T ss_dssp             EETTCCEEEEEEECCSSTTCEEEEESSTTTTCC---EE---EESSEEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EEeCCcEEEEEEecCCCCccEEEEEEeeeeeee---ee---ccCceeeEEcCccChhhCCcEEEEEEeCCCcEEEEEEEE
Confidence            456777777787766788889999987765532   11   113367899999999999999999999999999999998


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        89 V   89 (90)
T d1gsma1          89 V   89 (90)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=3.6e-15  Score=98.84  Aligned_cols=66  Identities=15%  Similarity=0.324  Sum_probs=55.1

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +..+.+|++++|.|.+.|.|.|.+.|++++..+..+            .   ..|.|.++..+|+|.|+|.|.|..|..+
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~------------~---~~l~i~~v~~~DsG~Y~C~a~N~~g~~~   72 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG------------G---KTLSVSQLELQDSGTWTCTVLQNQKKVE   72 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE------------S---SEEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee------------e---eeeeeeecccccccEEEEEEEeCCCEEE
Confidence            456899999999999999999999999876543211            1   1378999999999999999999999765


Q ss_pred             E
Q psy15667         91 I   91 (286)
Q Consensus        91 ~   91 (286)
                      .
T Consensus        73 ~   73 (84)
T d2nxyb2          73 F   73 (84)
T ss_dssp             E
T ss_pred             E
Confidence            4

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.7e-16  Score=103.68  Aligned_cols=78  Identities=22%  Similarity=0.352  Sum_probs=65.1

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      .+|.|+.....+++.+|++++|.|.+.|.|+ ++++|+|||..+..+.+....     .+.   .|.|.+++.+|+|.|+
T Consensus         5 ~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~-----~~~---~L~I~~v~~~D~G~Y~   76 (93)
T d1n26a1           5 RCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAG-----MGR---RLLLRSVQLHDSGNYS   76 (93)
T ss_dssp             CCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEE-----ESS---EEEECSCCGGGCEEEE
T ss_pred             CCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEec-----CCC---EEEECCCChhcCEEEE
Confidence            3789999999999999999999999998765 589999999999876654321     122   4899999999999999


Q ss_pred             EEEEcCC
Q psy15667         80 CVAENRA   86 (286)
Q Consensus        80 C~a~n~~   86 (286)
                      |.|.|..
T Consensus        77 C~a~n~~   83 (93)
T d1n26a1          77 CYRAGRP   83 (93)
T ss_dssp             EESSSSC
T ss_pred             EEECCcc
Confidence            9998864

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.55  E-value=9.2e-15  Score=99.64  Aligned_cols=80  Identities=21%  Similarity=0.285  Sum_probs=60.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.+.+.|+|+|..+.......+.. .......|.|.++..+|+|.|+|.|.|..|... .++.
T Consensus        15 ~~~G~~v~l~C~~~-g~P~~~v~W~k~g~~i~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~s~~   93 (97)
T d1biha3          15 AKAGDVTMIYCMYG-SNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLK   93 (97)
T ss_dssp             EETTSCEEEEEEEE-CSSCCCCEEEETTEECCCCTTSSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEE
T ss_pred             EecCCeEEEEEEEE-EecCCEEEEEEeeeeccccceeeeeeeeecCCCEEEEEeccccccEEEEEEEEECCCcEEEEEEE
Confidence            45667777777653 67788899999999886654444433 223356899999999999999999999999864 5778


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |+|
T Consensus        94 L~V   96 (97)
T d1biha3          94 LTV   96 (97)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            887

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=2.7e-14  Score=99.67  Aligned_cols=90  Identities=9%  Similarity=0.149  Sum_probs=67.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCC---CCeeEEeeCCEEcC---CCCeeEeceEEecc-cceeEEEEEcccccCCC
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNP---TPDIGWTLDGFELP---TNNRFVIGQFVSGH-GDVISHVNISHVTVEDG   75 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~~~~l~---~~~~~~~~~~~~~~-~~~~~~l~I~~~~~~D~   75 (286)
                      |.|...+.++++.+|++++|.|.+.|.|   .|.|.|+|++....   ...++......... ......|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            5788899999999999999999999998   68899999875432   12233322221111 12345699999999999


Q ss_pred             eEEEEEEEcCCEEEEEe
Q psy15667         76 GEYACVAENRAGTCEIT   92 (286)
Q Consensus        76 G~Y~C~a~n~~g~~~~~   92 (286)
                      |.|+|.|.|..|..+..
T Consensus        85 G~Y~C~a~N~~G~~~~~  101 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSN  101 (110)
T ss_dssp             EEEEEEEEETTEEEEEE
T ss_pred             cEEEEEEEECCCeEEEE
Confidence            99999999999976543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.55  E-value=9.2e-15  Score=98.60  Aligned_cols=80  Identities=24%  Similarity=0.415  Sum_probs=63.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+.+|+.+.|.|.+. |.|.|.+.|+|++..+.......+....  ++.|.|.++..+|+|.|+|.|.|..|.......
T Consensus        11 ~~v~~G~~~~l~C~v~-g~p~p~v~W~~~~~~i~~~~~~~~~~~~--~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~   87 (92)
T d1epfa2          11 QEFKEGEDAVIVCDVV-SSLPPTIIWKHKGRDVILKKDVRFIVLS--NNYLQIRGIKKTDEGTYRCEGRILARGEINFKD   87 (92)
T ss_dssp             EECCTTSCEEECCEEE-CSSCCEEEEEETTEEGGGGCCTTEEECT--TSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEE
T ss_pred             EEEeCCCcEEEEEEEe-ecCCCeEEEEEcCcccccccceeeeeee--eeeEEECCCCHHhCEEEEEEEEECcCCEEEEEE
Confidence            4477888888888874 7888999999999988665544444332  346999999999999999999999887777776


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        88 i~V   90 (92)
T d1epfa2          88 IQV   90 (92)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            665

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=8e-15  Score=105.43  Aligned_cols=112  Identities=14%  Similarity=0.203  Sum_probs=74.5

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+..|++++|.|.+.|.|.|.+.|.+....+....          .....+.. .........|..+...+....++
T Consensus        17 ~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~----------~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~r~   85 (130)
T d1gxea_          17 DTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAP----------ARPAPDAP-EDTGDSDEWVFDKKLLCETEGRV   85 (130)
T ss_dssp             CEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSC----------CCCCCCCC-CCCCCSSCCCCSCCCCCSCSSSC
T ss_pred             CCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCc----------cceeeecc-cccccceeeecCCceeeccCceE
Confidence            35677899999999999999999999998544332110          00000000 01111222233344444444445


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+... .....|.|.++..+|+|.|+|.|.|.+|....++.|.|
T Consensus        86 ~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V  128 (130)
T d1gxea_          86 RVETT-KDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV  128 (130)
T ss_dssp             EEEEE-TTEEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EEEEC-CCEEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEE
Confidence            44332 34678999999999999999999999999999999987

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=1.1e-15  Score=100.98  Aligned_cols=72  Identities=25%  Similarity=0.249  Sum_probs=58.4

Q ss_pred             CCeeEec--cccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYS--FIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~--~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +|+|...  +.++++.+|+.+.|.|.+.|+|.|.++|+|||..+....                  .+.+++.+|+|.|.
T Consensus         2 ~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~~~~~~------------------~~~~v~~~d~G~Y~   63 (84)
T d2oz4a3           2 GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIG------------------ESVTVTRDLEGTYL   63 (84)
T ss_dssp             EEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTEECCTT------------------SCEECCGGGCEEEE
T ss_pred             CCceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeeccceeee------------------eeeccccCCCCEEE
Confidence            4666433  566789999999999999999999999999987764322                  24567889999999


Q ss_pred             EEEEcCCEEEEE
Q psy15667         80 CVAENRAGTCEI   91 (286)
Q Consensus        80 C~a~n~~g~~~~   91 (286)
                      |.|.|..|..+.
T Consensus        64 C~A~N~~G~~~~   75 (84)
T d2oz4a3          64 CRARSTQGEVTR   75 (84)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEcCCCEEEE
Confidence            999999997653

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5.3e-15  Score=99.65  Aligned_cols=81  Identities=22%  Similarity=0.420  Sum_probs=62.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+|+|..+....+..+... ......|.|.+++.+|+|.|+|.|.|..|.. +..+.
T Consensus         8 v~~G~~~~l~C~v~-g~p~p~v~W~k~g~~l~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~S~~~~   86 (91)
T d1rhfa1           8 VSQGQPVKLNCSVE-GMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVW   86 (91)
T ss_dssp             EETTCCEEEEEEEE-SCSSCCEEEEETTEECCSSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEEESSCTTCEECCCEE
T ss_pred             EcCCCeEEEEEEEE-ecCCceEEEEEeecccccceeeeeeecccCceeeEEECCCCcccCEEEEEEEEECCCCEEEEEEE
Confidence            45667777777663 677888999999999876655444432 2234579999999999999999999999975 56788


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.|+
T Consensus        87 l~V~   90 (91)
T d1rhfa1          87 LTVE   90 (91)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8874

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=5e-15  Score=98.14  Aligned_cols=71  Identities=13%  Similarity=0.179  Sum_probs=57.7

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSK  282 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~  282 (286)
                      ..+.+|+.+.|.|.+. |.|+|.+.|++++..+..           ....|.|.++..+|+|.|+|.|.|..|.....+.
T Consensus         9 ~~v~~G~~~~L~C~~~-g~p~P~i~W~~~~~~~~~-----------~~~~l~i~~v~~~DsG~Y~C~a~N~~g~~~~~~~   76 (84)
T d2nxyb2           9 THLLQGQSLTLTLESP-PGSSPSVQCRSPRGKNIQ-----------GGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKID   76 (84)
T ss_dssp             SCEETTCCEEEEEECC-TTCCCEEEEECTTCCEEE-----------ESSEEEESSCCGGGCEEEEEEEEETTEEEEEEEE
T ss_pred             eEEECCCeEEEEEEeE-cCCchheEEEeeccccee-----------eeeeeeeeecccccccEEEEEEEeCCCEEEEEEE
Confidence            3466788888888764 788899999987654321           1347899999999999999999999999999988


Q ss_pred             EEE
Q psy15667        283 LQV  285 (286)
Q Consensus       283 L~V  285 (286)
                      |.|
T Consensus        77 v~V   79 (84)
T d2nxyb2          77 IVV   79 (84)
T ss_dssp             ECE
T ss_pred             EEE
Confidence            877

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=3.1e-14  Score=99.84  Aligned_cols=88  Identities=11%  Similarity=0.169  Sum_probs=66.0

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCC---CCeeEEeeCCEEc---CCCCeeEeceEEeccc-ceeEEEEEcccccCCCe
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNP---TPDIGWTLDGFEL---PTNNRFVIGQFVSGHG-DVISHVNISHVTVEDGG   76 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p---~p~v~W~~~~~~l---~~~~~~~~~~~~~~~~-~~~~~l~I~~~~~~D~G   76 (286)
                      .|...+.++++.+|++++|.|.+.|.|   .|.|.|+|++...   ....++.+........ .....|.|.+++.+|+|
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   81 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAG   81 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCE
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCe
Confidence            466788899999999999999999998   6899999987542   1233333322222222 22346999999999999


Q ss_pred             EEEEEEEcCCEEEEE
Q psy15667         77 EYACVAENRAGTCEI   91 (286)
Q Consensus        77 ~Y~C~a~n~~g~~~~   91 (286)
                      .|+|.|.|..|..+.
T Consensus        82 ~Y~C~a~N~~G~~~~   96 (113)
T d2dava1          82 NYRCEVTYKDKFDSC   96 (113)
T ss_dssp             EEEEEEECSSCEEEE
T ss_pred             EEEEEEEeCCCEEEE
Confidence            999999999997654

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.5e-14  Score=97.22  Aligned_cols=37  Identities=16%  Similarity=0.359  Sum_probs=33.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce-eeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~L~V~  286 (286)
                      ..+|.|.++..+|+|.|+|.|.|..|.. +..+.|.||
T Consensus        59 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~~a~L~Vk   96 (96)
T d2c9aa1          59 IASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVK   96 (96)
T ss_dssp             EEEEEECSCCGGGCSEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ceEEEECCCCHHHCeEEEEEEEeCCCeEEEEEEEEEEC
Confidence            4579999999999999999999999986 455899997

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=1.3e-14  Score=98.65  Aligned_cols=85  Identities=18%  Similarity=0.288  Sum_probs=61.4

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecCCCCeeEEee--CCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTL--DGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~--~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +.|.|. .+.++.+.+|+++.|.|.+.|.|.|.+.|.+  ++.......+...   .. .......|.|.++..+|+|.|
T Consensus         1 ~~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~~---~~-~~~~~~~L~I~~v~~~D~G~Y   75 (96)
T d2c9aa1           1 RTPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIKV---TS-SRRFIASFNVVNTTKRDAGKY   75 (96)
T ss_dssp             SSCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEEE---EE-TTEEEEEEEECSCCGGGCSEE
T ss_pred             CcCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCceeE---EE-eecCceEEEECCCCHHHCeEE
Confidence            479997 6999999999999999999999988766443  2222222222111   11 112234699999999999999


Q ss_pred             EEEEEcCCEEEE
Q psy15667         79 ACVAENRAGTCE   90 (286)
Q Consensus        79 ~C~a~n~~g~~~   90 (286)
                      +|.|.|..|...
T Consensus        76 ~C~a~N~~G~~~   87 (96)
T d2c9aa1          76 RCMIRTEGGVGI   87 (96)
T ss_dssp             EEEEEETTEEEE
T ss_pred             EEEEEeCCCeEE
Confidence            999999999753

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.53  E-value=2.3e-14  Score=97.66  Aligned_cols=82  Identities=23%  Similarity=0.417  Sum_probs=63.9

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCC-CeeEEee-CCEEcCC-CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPT-PDIGWTL-DGFELPT-NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~-p~v~W~~-~~~~l~~-~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .+.+.|.++.+.+|+++.|.|.+.|.|+ |.+.|++ ||..+.. +.++....    .......|.|.+++.+|+|.|+|
T Consensus         2 ~V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~----~~~~~~~L~I~~~~~~D~G~Y~C   77 (97)
T d1epfa1           2 QVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVW----NDDDSSTLTIYNANIDDAGIYKC   77 (97)
T ss_dssp             CEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEE----EETTEEEEEECSCCGGGCEEEEE
T ss_pred             EEEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEe----ecCcceEEEcccCchhhceEEEE
Confidence            3667888899999999999999999985 7999998 5555543 44554322    12223469999999999999999


Q ss_pred             EEEcCCEEE
Q psy15667         81 VAENRAGTC   89 (286)
Q Consensus        81 ~a~n~~g~~   89 (286)
                      .|.|..|..
T Consensus        78 ~a~N~~G~~   86 (97)
T d1epfa1          78 VVTAEDGTQ   86 (97)
T ss_dssp             EEEETTTEE
T ss_pred             EEEeCCCcE
Confidence            999998864

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.7e-14  Score=96.84  Aligned_cols=75  Identities=17%  Similarity=0.262  Sum_probs=56.1

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      .+|+.+.|.|.+. |.|+|.+.|++++..+......    .....+.|.|.++..+|+|.|+|.|.|..|..+.++.|.|
T Consensus        14 ~~G~~v~l~C~~~-g~p~p~i~W~~~~~~~~~~~~~----~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~v~V   88 (90)
T d1vcaa2          14 QIGDSVSLTCSTT-GCESPFFSWRTQIDSPLNGKVT----NEGTTSTLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEI   88 (90)
T ss_dssp             ETTSCEEEEEEEE-SCSSCEEEEEETTCCCCSSEEE----EETTEEEEEESSCCGGGCSEEEEEEEETTEEEEEEEEEEE
T ss_pred             ECCCEEEEEEecc-CCCCceEEEEecCccceeeeee----eecCCcEEEEecccccccceEEEEEEeCCCEEEEEEEEEE
Confidence            3566666666653 6777778888777655332111    1133678999999999999999999999999999999987

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=1.3e-14  Score=96.94  Aligned_cols=75  Identities=19%  Similarity=0.319  Sum_probs=60.0

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~  281 (286)
                      ..+.+|+.+.|.|.+..+.|.+.+.|+|+|+.+...         ..+..|.|.++..+|+|.|+|.|.|..|.. +..+
T Consensus        10 ~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~---------~~~~~l~i~~v~~~dsG~Y~C~a~n~~g~~~S~~v   80 (88)
T d2fcba2          10 LEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFS---------RSDPNFSIPQANHSHSGDYHCTGNIGYTLYSSKPV   80 (88)
T ss_dssp             SEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEE---------SSCCEEEETTCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEecCCeEEEEEEecCCCCCcEEEEEeeccccccc---------ccccccccCccCHHHCCeEEEEEEeCCCCEEeeeE
Confidence            346788888888887767788899999999876321         124579999999999999999999999875 4567


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|+|+
T Consensus        81 ~l~V~   85 (88)
T d2fcba2          81 TITVQ   85 (88)
T ss_dssp             EEEEC
T ss_pred             EEEEe
Confidence            78875

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.51  E-value=9e-15  Score=102.14  Aligned_cols=89  Identities=26%  Similarity=0.425  Sum_probs=61.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEec---ccceeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSG---HGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~---~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+........+.+|+++.|.|.+. |+|.+++.|++|+..+..............   .......|.|.+++.+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   81 (110)
T d1f97a2           2 PPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGE   81 (110)
T ss_dssp             CCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEE
T ss_pred             CCccceeCCCCEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEE
Confidence            66665545556789999999999985 899999999999998864433221110000   00111248899999999999


Q ss_pred             EEEEEEcCCEEEE
Q psy15667         78 YACVAENRAGTCE   90 (286)
Q Consensus        78 Y~C~a~n~~g~~~   90 (286)
                      |+|.|.|..|...
T Consensus        82 Y~C~a~N~~G~~~   94 (110)
T d1f97a2          82 YYCQAQNGYGTAM   94 (110)
T ss_dssp             EEEEEECSSSCCE
T ss_pred             EEEEEEECCCcEE
Confidence            9999999887653

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=3.4e-15  Score=103.24  Aligned_cols=83  Identities=24%  Similarity=0.433  Sum_probs=64.4

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec------CCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL------DSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~------~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ..+.+|+.+.|.|.+..|.|.+.+.|+|+|..+....+......      ......|.|.++..+|+|.|+|.|.|.+|.
T Consensus        12 ~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   91 (104)
T d1nbqa2          12 SSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEYSCEARNGYGT   91 (104)
T ss_dssp             SEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCEEEEEECSSSC
T ss_pred             CEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEEEEEEEECCCc
Confidence            34678999999998877899999999999998865543332221      123467899999999999999999999998


Q ss_pred             eeeEEEEEE
Q psy15667        277 ARYSSKLQV  285 (286)
Q Consensus       277 ~~~~~~L~V  285 (286)
                      ...++.|.|
T Consensus        92 ~~~s~~v~v  100 (104)
T d1nbqa2          92 PMTSNAVRM  100 (104)
T ss_dssp             CEECCCBCC
T ss_pred             eEEEEEEEE
Confidence            877665544

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.51  E-value=4.8e-14  Score=95.98  Aligned_cols=81  Identities=23%  Similarity=0.431  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEe-CCeeCCC-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLK-DGKPLSP-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~~~~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~  281 (286)
                      +.+|+.+.|.|.+...++.+.+.|+| +|..+.. ..++.+.........|.|.++..+|+|.|+|.|.|..|.. +.++
T Consensus        12 v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~tv   91 (97)
T d1epfa1          12 ISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATV   91 (97)
T ss_dssp             EETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEEETTTEEEEEEE
T ss_pred             EccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCcceEEEcccCchhhceEEEEEEEeCCCcEEEEEE
Confidence            44666666666654333347889998 5555443 3344444333446789999999999999999999999964 4567


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        92 ~l~V   95 (97)
T d1epfa1          92 NVKI   95 (97)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7765

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.50  E-value=5.2e-14  Score=97.96  Aligned_cols=36  Identities=36%  Similarity=0.503  Sum_probs=34.2

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        73 ~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          73 IEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             cEEEEECCCCHHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            467999999999999999999999999999999987

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=5.8e-14  Score=92.95  Aligned_cols=71  Identities=21%  Similarity=0.387  Sum_probs=54.3

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSSK  282 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~~  282 (286)
                      +.+|+.+.|.|.+. |.|.| ++.|+|||..+....          ...+.|.....+|+|.|+|.|.|.+|.. +.++.
T Consensus        13 v~~G~~~~l~C~~~-g~P~P~~i~W~k~g~~i~~~~----------~~~~~l~~~~~~d~G~Y~C~A~N~~G~~~S~~~~   81 (85)
T d1rhfa2          13 VPPNAPFQLSCEAV-GPPEPVTIVWWRGTTKIGGPA----------PSPSVLNVTGVTQSTMFSCEAHNLKGLASSRTAT   81 (85)
T ss_dssp             ECTTCCEEEEEEEE-CSSSCCEEEEEETTEECSCSE----------ESSEEEEECCCSSCEEEEEEEEETTEEEECCCEE
T ss_pred             EcCCCEEEEEEEEe-cCCcceEEEEEECCEECCCCC----------CcceEEecCCccccEEEEEEEEcCCCcEEEEEEE
Confidence            55777777777764 66665 899999999885432          2245667777889999999999999965 45788


Q ss_pred             EEEC
Q psy15667        283 LQVK  286 (286)
Q Consensus       283 L~V~  286 (286)
                      |.||
T Consensus        82 v~Vk   85 (85)
T d1rhfa2          82 VHLQ   85 (85)
T ss_dssp             EEEC
T ss_pred             EEEC
Confidence            8886

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.7e-13  Score=94.63  Aligned_cols=87  Identities=21%  Similarity=0.329  Sum_probs=62.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      ||+|.. ..+  -..+....|.|.+.|.|.|.+.|++||++|..+.++...... ........|.|.+++.+|+|.|+|.
T Consensus         5 PP~i~~-~~~--~~~~~~~~i~~~v~G~P~P~v~W~~n~~~i~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (105)
T d1wwca_           5 PPRVVS-LEE--PELRLEHCIEFVVRGNPPPTLHWLHNGQPLRESKIIHVEYYQ-EGEISEGCLLFNKPTHYNNGNYTLI   80 (105)
T ss_dssp             CCCCCC-CCC--CCCCCEEEEEEEEECSSCCEEEEEETTEECCCSSSEEEEEEE-CSSEEEEEEEEESCCGGGCEEEEEE
T ss_pred             CCeeEE-eCC--CEEEEEEEEEEEEEEeCCCeEEEEeCccccCCCcceeeeEEe-ecccceEEEEEeecccccceEEEEE
Confidence            677642 111  223445567789999999999999999999877665432211 1222345699999999999999999


Q ss_pred             EEcCCEEEEEe
Q psy15667         82 AENRAGTCEIT   92 (286)
Q Consensus        82 a~n~~g~~~~~   92 (286)
                      |.|..|..+.+
T Consensus        81 a~N~~G~~~~~   91 (105)
T d1wwca_          81 AKNPLGTANQT   91 (105)
T ss_dssp             EEETTEEEEEE
T ss_pred             EEcCCCEEEEE
Confidence            99999987543

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.3e-14  Score=104.31  Aligned_cols=85  Identities=20%  Similarity=0.278  Sum_probs=64.7

Q ss_pred             CCeeE-----eccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCC-----------------------------
Q psy15667          2 PPILT-----YSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNN-----------------------------   47 (286)
Q Consensus         2 ~p~~~-----~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~-----------------------------   47 (286)
                      ||.|.     ..+..+++.+|++++|.|.+.|.|.|.+.|++++..+....                             
T Consensus         4 PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   83 (130)
T d1gxea_           4 PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEG   83 (130)
T ss_dssp             CCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCSS
T ss_pred             CCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccCc
Confidence            78874     34556789999999999999999999999999876653221                             


Q ss_pred             eeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEEE
Q psy15667         48 RFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCEI   91 (286)
Q Consensus        48 ~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~~   91 (286)
                      ++.+    . .......|.|.++..+|+|.|+|.|.|..|....
T Consensus        84 r~~~----~-~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~  122 (130)
T d1gxea_          84 RVRV----E-TTKDRSIFTVEGAEKEDEGVYTVTVKNPVGEDQV  122 (130)
T ss_dssp             SCEE----E-EETTEEEEECSCCCTTTCEEEEEEEECSSCEEEE
T ss_pred             eEEE----E-ECCCEEEEEECcCChhcCEEEEEEEEECCCEEEE
Confidence            1111    0 1112346999999999999999999999998653

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1.2e-13  Score=94.69  Aligned_cols=80  Identities=23%  Similarity=0.388  Sum_probs=56.4

Q ss_pred             CCCCCeEEEEEeeecCCCCC-eEEEEeCCeeCC----CC--CCceeeecCCCeeeEEEcccC-CCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHGDPPL-TIRWLKDGKPLS----PR--FPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~-~~~W~~~g~~~~----~~--~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~N~~g~  276 (286)
                      +.+|+.+.|.|.+. |.|++ .+.|+|++....    ..  .++.+.. ......|.|.++. .+|+|.|+|.|.|..|.
T Consensus        14 v~~G~~v~l~C~v~-g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~~~D~G~Y~C~A~N~~G~   91 (101)
T d3b5ha1          14 INEGETAMLVCKSE-SVPPVTDWAWYKITDSEDKALMNGSESRFFVSS-SQGRSELHIENLNMEADPGQYRCNGTSSKGS   91 (101)
T ss_dssp             ECTTSCEEEEEECC-CSSCCCEEEEEECCSSSCEECCTTGGGTEEEEE-ETTEEEEEECSCCTTTSSEEEEEEEEETTEE
T ss_pred             ECcCCeEEEEEEEE-ecCCeeEEEEEeccceeeeecccCCCceEEEEe-CCCEEEEEEeccccccCCEEEEEEEEECCCE
Confidence            55677777777764 44444 688887654221    11  1222222 2346689999998 47999999999999999


Q ss_pred             eeeEEEEEEC
Q psy15667        277 ARYSSKLQVK  286 (286)
Q Consensus       277 ~~~~~~L~V~  286 (286)
                      .+.++.|.||
T Consensus        92 ~~~~~~L~Vr  101 (101)
T d3b5ha1          92 DQAIITLRVR  101 (101)
T ss_dssp             EEEEEEEEEC
T ss_pred             EEEEEEEEEC
Confidence            9999999997

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=1e-13  Score=96.18  Aligned_cols=89  Identities=19%  Similarity=0.336  Sum_probs=64.2

Q ss_pred             CeeEecccc-ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEec-------ccceeEEEEEcccccCC
Q psy15667          3 PILTYSFIE-QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG-------HGDVISHVNISHVTVED   74 (286)
Q Consensus         3 p~~~~~~~~-~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~-------~~~~~~~l~I~~~~~~D   74 (286)
                      |.|.....+ ..+..|++++|.|.+.|+|.|.+.|++||..+..............       .......|.|.+++.+|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   81 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRF   81 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHH
Confidence            445444433 4678999999999999999999999999998865433221110000       01123569999999999


Q ss_pred             Ce-EEEEEEEcCCEEEEE
Q psy15667         75 GG-EYACVAENRAGTCEI   91 (286)
Q Consensus        75 ~G-~Y~C~a~n~~g~~~~   91 (286)
                      .| .|+|.|.|..|..+.
T Consensus        82 ~g~~Y~C~A~N~~G~~~~   99 (107)
T d1iray3          82 YKHPFTCFAKNTHGIDAA   99 (107)
T ss_dssp             GSSCEEEEEECSSCEEEE
T ss_pred             CCcEEEEEEEeCCCeEEE
Confidence            99 599999999997653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=7.1e-14  Score=94.93  Aligned_cols=78  Identities=24%  Similarity=0.488  Sum_probs=62.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      +|.+.  ..+.++.+|++++|.|.+.+ |.+.+.|+++|..|..+.++.+.    ...   ..|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~--~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~~~l~~~~~~~~~----~~~---~~L~I~~v~~~d~G~Y~C~   74 (96)
T d1l6za2           5 QPFLQ--VTNTTVKELDSVTLTCLSND-IGANIQWLFNSQSLQLTERMTLS----QNN---SILRIDPIKREDAGEYQCE   74 (96)
T ss_dssp             CCCEE--CSCSEECTTSCEEEEECCCC-SSCEEEEEETTEECCCCTTEEEE----TTT---TEEEECSCCGGGCEEEEEE
T ss_pred             CCeEE--cCceEEeCCCeEEEEEccCC-CCCCEEEEEeeeecccccceecc----CCc---eEEEEeccchhhceEEEEE
Confidence            45554  56788999999999999876 56889999999999877776542    122   2489999999999999999


Q ss_pred             EEcCCEEE
Q psy15667         82 AENRAGTC   89 (286)
Q Consensus        82 a~n~~g~~   89 (286)
                      |.|..|..
T Consensus        75 a~N~~g~~   82 (96)
T d1l6za2          75 ISNPVSVR   82 (96)
T ss_dssp             EESSSCCE
T ss_pred             EEeCCCCe
Confidence            99987654

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.49  E-value=1.2e-14  Score=97.16  Aligned_cols=75  Identities=15%  Similarity=0.189  Sum_probs=59.0

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~  281 (286)
                      ..+.+|+.+.|.|.+..+.|.+.+.|+|||+.+...      .   .+..|.|.++..+|+|.|+|.|.|..|... ..+
T Consensus        12 ~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~------~---~~~~l~I~~v~~~dsG~Y~C~a~n~~~~~~S~~v   82 (89)
T d1fnla2          12 WVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYF------H---HNSDFHIPKATLKDSGSYFCRGLVGSKNVSSETV   82 (89)
T ss_dssp             SEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEE------E---ECCCEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEccCCeEEEEEEecCCCCCcEEEEEEccccccee------c---cccccEECccceeccceEEEEEEeCCCCeEEeeE
Confidence            336688888888887767788899999999875321      1   134789999999999999999999998654 567


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|+|+
T Consensus        83 ~itV~   87 (89)
T d1fnla2          83 NITIT   87 (89)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            77774

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.49  E-value=2.2e-14  Score=100.16  Aligned_cols=82  Identities=28%  Similarity=0.469  Sum_probs=60.5

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-------cCCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-------LDSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .+.+|+.+.|.|.+..|.|++.+.|+|++..+..........       .......|.|.+++.+|+|.|+|.|.|.+|.
T Consensus        13 ~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~G~   92 (110)
T d1f97a2          13 SVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGT   92 (110)
T ss_dssp             EEETTSCEEEEEECSCCBSCCEEEEEETTEESBC-----CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSSSC
T ss_pred             EEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCCCceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECCCc
Confidence            367899999999887789999999999998775433222111       1123457899999999999999999999997


Q ss_pred             eee--EEEEEE
Q psy15667        277 ARY--SSKLQV  285 (286)
Q Consensus       277 ~~~--~~~L~V  285 (286)
                      ...  +++|.|
T Consensus        93 ~~~s~~v~l~V  103 (110)
T d1f97a2          93 AMRSEAAHMDA  103 (110)
T ss_dssp             CEECCCEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            755  445554

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=4.1e-15  Score=102.82  Aligned_cols=90  Identities=27%  Similarity=0.413  Sum_probs=66.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCCCCeeEeceEEec--ccceeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPTNNRFVIGQFVSG--HGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~--~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      ||.+......+.+.+|++++|.|.+. |+|.|.+.|+||+..+..+.++........  .......|.|.+++.+|+|.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y   81 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGEY   81 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCCSCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCCE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEccCCCceeEEeeCCcEEEeecccceEECCCCcccCcEE
Confidence            77777666677889999999999884 899999999999998865544321110000  001123488999999999999


Q ss_pred             EEEEEcCCEEEEE
Q psy15667         79 ACVAENRAGTCEI   91 (286)
Q Consensus        79 ~C~a~n~~g~~~~   91 (286)
                      +|.|.|..|....
T Consensus        82 ~C~a~N~~G~~~~   94 (104)
T d1nbqa2          82 SCEARNGYGTPMT   94 (104)
T ss_dssp             EEEEECSSSCCEE
T ss_pred             EEEEEECCCceEE
Confidence            9999999886544

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=7.4e-15  Score=99.11  Aligned_cols=80  Identities=20%  Similarity=0.203  Sum_probs=63.8

Q ss_pred             cCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCe-EEEEEEEecccceeeE
Q psy15667        202 FDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSG-EYTCVASNTAAQARYS  280 (286)
Q Consensus       202 ~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G-~Y~C~a~N~~g~~~~~  280 (286)
                      ...+.+|+.+.|.|.+. |.|.|.+.|++++..+.......   .......|.|.++..+|.| .|+|.|.|.+|....+
T Consensus        11 ~~~v~~G~~v~l~C~~~-g~P~p~v~W~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~~Y~C~a~N~~G~~~~s   86 (92)
T d2ifga1          11 NASVDVGDDVLLRCQVE-GRGLEQAGWILTELEQSATVMKS---GGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVS   86 (92)
T ss_dssp             SSCCBTTCCEEEEEEEE-CSSCCCCCEEESCCCSSEEECCC---CCSSEEEEEEESCCSTTTTCCEEECCEETTEECCEE
T ss_pred             CEEEeCCCEEEEeeecc-CCCCcEEEEEECCceeeeeeeee---eeccceeEEEccccccccceEEEEEEEcCCCEEEEE
Confidence            34577888999999875 78889999999998765432211   1233568999999999999 6999999999999999


Q ss_pred             EEEEE
Q psy15667        281 SKLQV  285 (286)
Q Consensus       281 ~~L~V  285 (286)
                      +.|.|
T Consensus        87 ~~l~V   91 (92)
T d2ifga1          87 VQVNV   91 (92)
T ss_dssp             ECCCC
T ss_pred             EEEEE
Confidence            98877

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=2.5e-14  Score=96.36  Aligned_cols=75  Identities=19%  Similarity=0.273  Sum_probs=55.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+..++++++++|+|+|..+....+.....    +.+|.|.+++.+|+|.|+|.|.|..+.   ++.|.
T Consensus        18 ~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~~---t~~l~   90 (93)
T d1n26a1          18 SLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWAGM----GRRLLLRSVQLHDSGNYSCYRAGRPAG---TVHLL   90 (93)
T ss_dssp             ECTTCCEEEECTTSCTTCCSEEEEEEECSSSSCCCEEEEEE----SSEEEECSCCGGGCEEEEEESSSSCSC---EEEEE
T ss_pred             EeCCCcEEEEEEeecCCCCceEEEEEccccccceeeEEecC----CCEEEECCCChhcCEEEEEEECCcccc---EEEEE
Confidence            45677777888766555667999999999886554433221    457999999999999999999987643   44565


Q ss_pred             EC
Q psy15667        285 VK  286 (286)
Q Consensus       285 V~  286 (286)
                      |+
T Consensus        91 V~   92 (93)
T d1n26a1          91 VD   92 (93)
T ss_dssp             EC
T ss_pred             EE
Confidence            53

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.48  E-value=3.4e-14  Score=95.00  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=58.0

Q ss_pred             eeEeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      ++...++...+.+|++++|.|.+.+ .|.+.+.|+|||..+....          ..   ..|.|.+++.+|+|.|+|.|
T Consensus         4 ~Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~~~~~~----------~~---~~l~I~~v~~~dsG~Y~C~a   70 (89)
T d1fnla2           4 WLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFH----------HN---SDFHIPKATLKDSGSYFCRG   70 (89)
T ss_dssp             SEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEE----------EC---CCEEESSCCGGGCEEEEEEE
T ss_pred             EEEEECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcccccceec----------cc---cccEECccceeccceEEEEE
Confidence            4566777888999999999999875 4666899999998764211          11   13789999999999999999


Q ss_pred             EcCCEEE
Q psy15667         83 ENRAGTC   89 (286)
Q Consensus        83 ~n~~g~~   89 (286)
                      .|..|..
T Consensus        71 ~n~~~~~   77 (89)
T d1fnla2          71 LVGSKNV   77 (89)
T ss_dssp             EETTEEE
T ss_pred             EeCCCCe
Confidence            9988754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.1e-13  Score=95.21  Aligned_cols=79  Identities=15%  Similarity=0.285  Sum_probs=64.6

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec----CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL----DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      ..+....+.|.+ .|.|.|++.|+|+|..+.++....+...    ......|.|.+++.+|+|.|+|.|.|..|..+.++
T Consensus        14 ~~~~~~~i~~~v-~G~P~P~i~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTV-KGNPKPALQWFYNGAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEE-ECSSCCEEEEEETTEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEEE-EEeCCCEEEEEECCEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            356777888887 4899999999999999987665554331    11245799999999999999999999999999999


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        93 ~v~V   96 (103)
T d1wwbx_          93 SAHF   96 (103)
T ss_dssp             EECC
T ss_pred             EEEE
Confidence            8876

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.48  E-value=6.1e-14  Score=93.54  Aligned_cols=72  Identities=15%  Similarity=0.292  Sum_probs=57.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +....+...+.+|++++|+|.+.++ |.+.+.|+|||..+....          ..   ..|.|.+++.+|+|.|+|.|.
T Consensus         3 Lilq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~----------~~---~~l~i~~v~~~dsG~Y~C~a~   69 (88)
T d2fcba2           3 LVLQTPHLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR----------SD---PNFSIPQANHSHSGDYHCTGN   69 (88)
T ss_dssp             EEEECSCSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES----------SC---CEEEETTCCGGGCEEEEEEEE
T ss_pred             EEEeCCCCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc----------cc---cccccCccCHHHCCeEEEEEE
Confidence            4456667789999999999999755 667899999998764211          11   148899999999999999999


Q ss_pred             cCCEEE
Q psy15667         84 NRAGTC   89 (286)
Q Consensus        84 n~~g~~   89 (286)
                      |..|..
T Consensus        70 n~~g~~   75 (88)
T d2fcba2          70 IGYTLY   75 (88)
T ss_dssp             ETTEEE
T ss_pred             eCCCCE
Confidence            988764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.47  E-value=3.8e-14  Score=97.95  Aligned_cols=76  Identities=22%  Similarity=0.253  Sum_probs=56.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      +.+|+.+.|.|.+..+.|.+.+.|+|+|..+.......+... ...+.|.|.++..+|+|.|+|.|.|..|....+.
T Consensus        16 v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~v   91 (105)
T d1cs6a2          16 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-QTTGNLYIAKTEASDLGNYSCFATSHIDFITKSV   91 (105)
T ss_dssp             EETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-TTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEE
T ss_pred             EeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-cCCCEEeecccccccCcEEEEEEEECCCCEEEEE
Confidence            566777777777655778889999999986643322222221 2245799999999999999999999999877663

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.47  E-value=6.1e-14  Score=94.88  Aligned_cols=77  Identities=22%  Similarity=0.271  Sum_probs=53.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L  283 (286)
                      +.+|+.+.|.|.+...++++.+.|+|+|..+..........  ...+.|.|.++..+|+|.|+|.|.|..|.+. ..+.|
T Consensus        14 v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~l~~~~~~~~~~--~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~s~~v~l   91 (94)
T d1biha1          14 FRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHNAALR--KDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISF   91 (94)
T ss_dssp             EETTSCEEECCCEESCCSSCEEEEEESSSBCCTTTTTEEEC--TTSCCEEESSCCGGGCEEEEEEEEETTEEEECCCEEE
T ss_pred             EeCCCeEEEEEEecCCCCeeEEEEEeeeeeeeeecceeeec--ccceEEEEeccChhcCeEEEEEEEeCCCEEEEEEEEE
Confidence            44566666666554333345789999999886554333222  2246799999999999999999999999754 34333

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=5e-14  Score=95.29  Aligned_cols=75  Identities=24%  Similarity=0.442  Sum_probs=57.2

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC-CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF-PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~-~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.|.|.+.  .|++.+.|+|+|..+..+. .+.+... .....|.|.++..+|+|.|+|.|.|..    .++.|
T Consensus        18 v~~G~~v~l~c~v~--~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~~L~I~~~~~~D~G~Y~c~a~n~~----~s~~l   90 (94)
T d1pd6a_          18 VSKGHKIRLTVELA--DHDAEVKWLKNGQEIQMSGSKYIFESI-GAKRTLTISQCSLADDAAYQCVVGGEK----CSTEL   90 (94)
T ss_dssp             EETTSCEEEEEECS--SSSSCCEEEESSSEECCCSSSSEEEEE-TTEEEEEECSCSSSSCEEEEEEETTEE----ECCEE
T ss_pred             ECcCCeEEEEEEEC--CCCceEEEEEcCccceeeeeeEeeecc-CCeEEeecCCCCceecEEEEEEEeeEE----EEEEE
Confidence            56788888888863  4788999999999987654 3444433 346789999999999999999998754    44566


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        91 ~V~   93 (94)
T d1pd6a_          91 FVK   93 (94)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            663

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.46  E-value=6.8e-14  Score=92.45  Aligned_cols=70  Identities=21%  Similarity=0.334  Sum_probs=58.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .|.+...+...++.+|++++|+|.+.|.|.+. +.|++|+..+..+.               ..|.|.+++.+|+|.|+|
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~---------------~~l~i~~~~~~d~G~Y~C   69 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA---------------SSYFIDAATVNDSGEYRC   69 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC---------------SEEEESSCCGGGCEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc---------------eeeEecCCcccCCEEEEE
Confidence            57788899999999999999999999998875 66778887764321               137899999999999999


Q ss_pred             EEEcCC
Q psy15667         81 VAENRA   86 (286)
Q Consensus        81 ~a~n~~   86 (286)
                      +|.|..
T Consensus        70 ~a~~s~   75 (84)
T d1fnla1          70 QTNLST   75 (84)
T ss_dssp             ECSSSC
T ss_pred             EccCCC
Confidence            998753

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=2.4e-13  Score=93.85  Aligned_cols=77  Identities=25%  Similarity=0.383  Sum_probs=61.3

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeec---CCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDL---DSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~---~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +....+.|.+. |.|.|.+.|+|+|+.+....+..+...   ......|.|.++..+|+|.|+|.|.|..|..+.++.|.
T Consensus        17 ~~~~~i~~~v~-G~P~P~v~W~~n~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v~   95 (105)
T d1wwca_          17 RLEHCIEFVVR-GNPPPTLHWLHNGQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGH   95 (105)
T ss_dssp             CCEEEEEEEEE-CSSCCEEEEEETTEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEEC
T ss_pred             EEEEEEEEEEE-EeCCCeEEEEeCccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEEE
Confidence            34455777764 899999999999999977665443321   12345799999999999999999999999999999887


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        96 V   96 (105)
T d1wwca_          96 F   96 (105)
T ss_dssp             C
T ss_pred             E
Confidence            6

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=8.2e-15  Score=96.74  Aligned_cols=66  Identities=26%  Similarity=0.428  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+ .|.|.|++.|+|+|..+.+.              +.+.+++.+|+|.|+|.|.|.+|+.+..+.|.
T Consensus        16 ~~~G~~~~l~C~a-~G~P~P~v~W~k~g~~~~~~--------------~~~~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~   80 (84)
T d2oz4a3          16 WPENSQQTPMCQA-WGNPLPELKCLKDGTFPLPI--------------GESVTVTRDLEGTYLCRARSTQGEVTREVTVN   80 (84)
T ss_dssp             EETTCEECCCCCC-EEESCCEEEEEETTTEECCT--------------TSCEECCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEE-eEcCccEEEEEEeeccceee--------------eeeeccccCCCCEEEEEEEcCCCEEEEEEEEE
Confidence            4456666666665 36677788899988765432              23456889999999999999999999999998


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        81 V   81 (84)
T d2oz4a3          81 V   81 (84)
T ss_dssp             E
T ss_pred             E
Confidence            7

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=4.2e-13  Score=93.43  Aligned_cols=37  Identities=24%  Similarity=0.277  Sum_probs=34.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...|.|.+++.+|+|.|+|.|.|..|...+++.|.|+
T Consensus        71 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (110)
T d2avga1          71 LFELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTVH  107 (110)
T ss_dssp             EEEEEEESCCTTCCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEeccCHHHCcEEEEEEEECCCeEEEEEEEEEE
Confidence            4579999999999999999999999999999999984

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.45  E-value=7.7e-14  Score=92.44  Aligned_cols=69  Identities=22%  Similarity=0.399  Sum_probs=57.4

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCC-eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.|.+.+....+.+|++++|.|.+.++|.+ .+.|++||..+..+..               .|.|.+++.+|+|.|+|.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~~~---------------~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTHTQ---------------PSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEETTEECTTCCS---------------SEEEEECCGGGCEEEEEE
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeeccccccccccc---------------ceEEeeccccCCcEEEEE
Confidence            346677788899999999999999998876 6889999988864321               277999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      |.|..
T Consensus        70 a~ns~   74 (85)
T d2fcba1          70 TGQTS   74 (85)
T ss_dssp             CTTSB
T ss_pred             CCCCc
Confidence            98854

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=1.3e-13  Score=92.46  Aligned_cols=78  Identities=22%  Similarity=0.436  Sum_probs=58.2

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceee-ecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      ..+.+|+.+.|.|.+.  .|.+.+.|+|+|..+.......+. ...+....|.|.++..+|+|.|+|.|.|.    ..++
T Consensus        10 ~~v~~G~~v~l~C~v~--~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~----~~~a   83 (90)
T d1x44a1          10 TTAYCGERVELECEVS--EDDANVKWFKNGEEIIPGPKSRYRIRVEGKKHILIIEGATKADAAEYSVMTTGG----QSSA   83 (90)
T ss_dssp             EEEETTEEEEEEEECS--SSSCCCEEEETTEECCCSTTCSEEEEEETTEEEEEEEEECTTTCSEEEEEETTE----EEEE
T ss_pred             EEEeCCCcEEEEEEEC--CCCceEEEEEeecccCCCCCccEEEEEeCCccEEEECccccccCEEEEEEEecc----eEEE
Confidence            3467889999999873  477889999999988665442222 22234668999999999999999999875    4456


Q ss_pred             EEEEC
Q psy15667        282 KLQVK  286 (286)
Q Consensus       282 ~L~V~  286 (286)
                      .|.|+
T Consensus        84 ~l~V~   88 (90)
T d1x44a1          84 KLSVD   88 (90)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66663

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.2e-13  Score=94.93  Aligned_cols=79  Identities=15%  Similarity=0.216  Sum_probs=63.4

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeec-CCCC--eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASG-NPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      .||.++..+....+.+|+.++|+|.+.| +|.|  .+.|++++..|......        .......|.|..+..+|.|.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~~--------~~~~~s~l~i~~~~~dd~g~   74 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPAV--------GEPAEVTTTVLVRRDHHGAQ   74 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEECC--------TTTEEEEEEEECCSSCSSCE
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEccccccccccccc--------cccceEEEEEeeehhHCCCE
Confidence            4899999999999999999999999986 5665  57899999888532111        12233468899999999999


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|+|+|..|
T Consensus        75 ytC~A~n~~g   84 (103)
T d1iama1          75 FSCRTELDLR   84 (103)
T ss_dssp             EEEEEEEECG
T ss_pred             EEEEEEeCCC
Confidence            9999999765

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.8e-13  Score=94.36  Aligned_cols=81  Identities=17%  Similarity=0.172  Sum_probs=50.7

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCCce--eeecC-CCeeeEEEcccCCCCCeEEEEEEEeccccee-e
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPVN--VSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQAR-Y  279 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~~~--~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~  279 (286)
                      +.+|+.+.|.|.+...++.|.+.|+|++..+.. .....  ..... .....|.|.++..+|+|.|+|.|.|..|... +
T Consensus        15 v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~s~   94 (104)
T d2aw2a1          15 ILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANFQSNLIESH   94 (104)
T ss_dssp             EETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEETTEEEECC
T ss_pred             EeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEcCCCeEEEE
Confidence            334555555555542222467788887765522 11111  11111 1234699999999999999999999999754 5


Q ss_pred             EEEEEE
Q psy15667        280 SSKLQV  285 (286)
Q Consensus       280 ~~~L~V  285 (286)
                      ++.|.|
T Consensus        95 ~~~l~V  100 (104)
T d2aw2a1          95 STTLYV  100 (104)
T ss_dssp             CEEEEE
T ss_pred             EEEEEE
Confidence            777776

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.44  E-value=1.8e-13  Score=92.88  Aligned_cols=78  Identities=26%  Similarity=0.405  Sum_probs=62.7

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~  281 (286)
                      ..+.+|+.+.|.|.+. + +++.+.|+|+|..+....+..+..   ....|.|.++..+|+|.|+|.|.|.+|... ..+
T Consensus        13 ~~v~~g~~v~l~C~~~-~-~~~~v~W~~~~~~l~~~~~~~~~~---~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~S~~~   87 (96)
T d1l6za2          13 TTVKELDSVTLTCLSN-D-IGANIQWLFNSQSLQLTERMTLSQ---NNSILRIDPIKREDAGEYQCEISNPVSVRRSNSI   87 (96)
T ss_dssp             SEECTTSCEEEEECCC-C-SSCEEEEEETTEECCCCTTEEEET---TTTEEEECSCCGGGCEEEEEEEESSSCCEECCCC
T ss_pred             eEEeCCCeEEEEEccC-C-CCCCEEEEEeeeecccccceeccC---CceEEEEeccchhhceEEEEEEEeCCCCeEEEeE
Confidence            3467888888999763 3 567999999999998776665543   245799999999999999999999999775 467


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|.|
T Consensus        88 ~L~V   91 (96)
T d1l6za2          88 KLDI   91 (96)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8877

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=9.8e-14  Score=93.26  Aligned_cols=76  Identities=16%  Similarity=0.186  Sum_probs=57.6

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+++|+.+.|.|.+. | |+|.+.|+++|..+..........   .++.|.|.++.++|+|.|+|.|.|.+|....+..|
T Consensus         8 ~~~~G~~~~l~C~~~-g-~~~~v~W~~~g~~l~~~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~A~n~~g~~~~~~~l   82 (92)
T d1olza1           8 FFKHGGTAELKCSQK-S-NLARVFWKFQNGVLKAESPKYGLM---GRKNLLIFNLSEGDSGVYQCLSEERVKNKTVFQVV   82 (92)
T ss_dssp             EEETTSCEEECCCCS-C-TTCEEEEEESSSBCCCCSSSBCCT---TTTCEEECSCCGGGCEEEEEEEEEECSSSEEEEEE
T ss_pred             eEeCCCEEEEEEEee-c-cCCceeeecCcccceeeeeeeecc---eeeEEEECCCCHHHCcEEEEEEEEcCCCEEEEEEE
Confidence            366788888888774 4 567999999999886554322221   23579999999999999999999999977766554


Q ss_pred             E
Q psy15667        284 Q  284 (286)
Q Consensus       284 ~  284 (286)
                      .
T Consensus        83 ~   83 (92)
T d1olza1          83 A   83 (92)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=5.4e-14  Score=92.51  Aligned_cols=69  Identities=23%  Similarity=0.362  Sum_probs=55.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCe-eEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPD-IGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~-v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      |.|...+....+.+|++++|.|.+.++|.+. +.|++|+..+.....               .|.|.+++.+|+|.|.|.
T Consensus         2 P~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~~~---------------~l~i~~v~~~d~G~Y~C~   66 (82)
T d1f2qa1           2 PKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNS---------------SLNIVNAKFEDSGEYKCQ   66 (82)
T ss_dssp             CCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEECSCCSS---------------EEEECSCCGGGCEEEEEE
T ss_pred             CEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeeeeeeeecccc---------------eeEECCCChhhCCcEEEE
Confidence            7889999999999999999999999998874 567888887754321               378999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      |.|..
T Consensus        67 a~~s~   71 (82)
T d1f2qa1          67 HQQVN   71 (82)
T ss_dssp             CTTSS
T ss_pred             ecCCC
Confidence            98753

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=3.1e-14  Score=95.77  Aligned_cols=72  Identities=19%  Similarity=0.403  Sum_probs=57.8

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCC-CeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTN-NRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRA   86 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~-~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~   86 (286)
                      .++++.+.+|+++.|.|.+.| |.|.+.|+++|..|..+ .++.+.     .++   .|.|.+++.+|+|.|+|.|.|..
T Consensus         3 ~~~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~~-----~~~---~L~I~~v~~~DsG~Y~C~A~n~~   73 (92)
T d1olza1           3 SYRQHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGLM-----GRK---NLLIFNLSEGDSGVYQCLSEERV   73 (92)
T ss_dssp             EEEEEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCCT-----TTT---CEEECSCCGGGCEEEEEEEEEEC
T ss_pred             ChhheeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeecc-----eee---EEEECCCCHHHCcEEEEEEEEcC
Confidence            467789999999999999998 66899999999988653 333321     122   38899999999999999999976


Q ss_pred             EE
Q psy15667         87 GT   88 (286)
Q Consensus        87 g~   88 (286)
                      |.
T Consensus        74 g~   75 (92)
T d1olza1          74 KN   75 (92)
T ss_dssp             SS
T ss_pred             CC
Confidence            53

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=5.2e-13  Score=92.38  Aligned_cols=83  Identities=17%  Similarity=0.289  Sum_probs=61.6

Q ss_pred             cccccccCCCcEEEEE---EeecCCCCeeEEeeCCEEcCCCCeeEeceEEec--ccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKC---IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSG--HGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C---~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~--~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +.+..+..|..+.+.|   .+.|.|.|.+.|++||++|..+.++........  .......|.|.++..+|+|.|+|.|.
T Consensus         4 p~~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~   83 (107)
T d1he7a_           4 PASVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAA   83 (107)
T ss_dssp             CCCCCCCCCCCCCEEEEEEEECCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEE
T ss_pred             CCEeEECCCeEEEEEEEEEEEEEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEE
Confidence            4566777777777665   899999999999999999986665433211111  11123459999999999999999999


Q ss_pred             cCCEEEEE
Q psy15667         84 NRAGTCEI   91 (286)
Q Consensus        84 n~~g~~~~   91 (286)
                      |..|....
T Consensus        84 N~~G~~~~   91 (107)
T d1he7a_          84 NPFGQASA   91 (107)
T ss_dssp             ETTEEEEE
T ss_pred             eCCCEEEE
Confidence            99997653

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.43  E-value=2e-13  Score=91.14  Aligned_cols=72  Identities=22%  Similarity=0.304  Sum_probs=58.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      +...+....+.+|++++|+|.+.+. |..++.|+|||..+.....          .   ..|.|.+++.+|+|.|.|+|.
T Consensus         3 Lilq~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~~----------~---~~l~i~~~~~~dsG~Y~C~a~   69 (89)
T d1f2qa2           3 LLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYE----------N---HNISITNATVEDSGTYYCTGK   69 (89)
T ss_dssp             EEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCC----------S---SEEEESSCCGGGCEEEEEEEE
T ss_pred             EEEeCCcCeEeCCCEEEEEEEecCCCCCeEEEEEEeeeccccccc----------c---ceEEEeeeeeecCcEEEEEEE
Confidence            4556677889999999999999765 5669999999998854221          1   137899999999999999999


Q ss_pred             cCCEEE
Q psy15667         84 NRAGTC   89 (286)
Q Consensus        84 n~~g~~   89 (286)
                      |..+..
T Consensus        70 n~~~~~   75 (89)
T d1f2qa2          70 VWQLDY   75 (89)
T ss_dssp             ETTEEE
T ss_pred             eCCCCe
Confidence            987754

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.9e-13  Score=93.61  Aligned_cols=72  Identities=28%  Similarity=0.419  Sum_probs=54.2

Q ss_pred             CCCCCeEEEEEe-----eecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        205 LPEGARTRVICG-----VTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       205 ~~~g~~~~l~c~-----~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      +..|....|.|.     ...+.|.|.+.|+|||+.+..........    ++.|.|.++..+|+|.|+|.|.|..|....
T Consensus        11 ~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~n~~~g~~~   86 (103)
T d1iray2          11 LPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGV----KDRLIVMNVAEKHRGNYTCHASYTYLGKQY   86 (103)
T ss_dssp             EESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEEE----TTEEEESSCCGGGCEEEEEEEEEEETTEEE
T ss_pred             EecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEec----CCEEEEcccccccCcEEEEEEEECcCCEEE
Confidence            456666666663     22478999999999999997654433222    347999999999999999999998875544


Q ss_pred             E
Q psy15667        280 S  280 (286)
Q Consensus       280 ~  280 (286)
                      +
T Consensus        87 ~   87 (103)
T d1iray2          87 P   87 (103)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=8.8e-14  Score=95.23  Aligned_cols=77  Identities=18%  Similarity=0.244  Sum_probs=60.8

Q ss_pred             CCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCC--CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        206 PEGARTRVICGVTHGDPPLTIRWLKDGKPLSPR--FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       206 ~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~--~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+|+.+.|.|.+..+.|.+.+.|+|+|..+...  ....+...   +..|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus        15 ~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~g~~~~~~~L   91 (101)
T d1iray1          15 SANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQH---KEKLWFVPAKVEDSGHYYCVVRNSSYCLRIKISA   91 (101)
T ss_dssp             ETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEEEE---TTEEEETTCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             eCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEecc---CCEEEeccceecCCEEEEEEEECCCCeEEEEEEE
Confidence            467777778877667888999999998755322  22333322   3579999999999999999999999999999999


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        92 ~V   93 (101)
T d1iray1          92 KF   93 (101)
T ss_dssp             EE
T ss_pred             EE
Confidence            87

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=1.8e-13  Score=91.34  Aligned_cols=74  Identities=19%  Similarity=0.235  Sum_probs=57.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce-eeEE
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA-RYSS  281 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~-~~~~  281 (286)
                      ..+.+|+.+.|.|.+..+.++..+.|+|||+.+....         ....|.|.+++.+|+|.|.|.|.|..|.. +..+
T Consensus        10 ~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g~~~~~~~---------~~~~l~i~~~~~~dsG~Y~C~a~n~~~~~~S~~v   80 (89)
T d1f2qa2          10 EVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWY---------ENHNISITNATVEDSGTYYCTGKVWQLDYESEPL   80 (89)
T ss_dssp             SEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCC---------CSSEEEESSCCGGGCEEEEEEEEETTEEEECCCE
T ss_pred             CeEeCCCEEEEEEEecCCCCCeEEEEEEeeecccccc---------ccceEEEeeeeeecCcEEEEEEEeCCCCeEeeeE
Confidence            3356788888888776667778999999999875321         13578999999999999999999988764 3556


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .|+|
T Consensus        81 ~i~V   84 (89)
T d1f2qa2          81 NITV   84 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            6766

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.3e-14  Score=98.32  Aligned_cols=88  Identities=22%  Similarity=0.322  Sum_probs=61.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccc---eeEEEEEcccccCCCeEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGD---VISHVNISHVTVEDGGEY   78 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~---~~~~l~I~~~~~~D~G~Y   78 (286)
                      ++.+.....++.+.+|++++|.|.+.|.|.|.+.|++++..+.....+...........   ....|.|.+++.+|+|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   83 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLPTGITFKSVTREDTGTY   83 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEETTEEECSCCCTTSCSEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecCceEEEecccccceeeE
Confidence            34566677788899999999999999999999999997654421111100000000000   002489999999999999


Q ss_pred             EEEEEcCCEEE
Q psy15667         79 ACVAENRAGTC   89 (286)
Q Consensus        79 ~C~a~n~~g~~   89 (286)
                      +|.|.|..|..
T Consensus        84 ~C~a~n~~G~~   94 (105)
T d1nbqa1          84 TCMVSEEGGNS   94 (105)
T ss_dssp             EEEEEETTSSC
T ss_pred             EEEEEECCCCE
Confidence            99999988754

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.42  E-value=1.2e-13  Score=93.88  Aligned_cols=74  Identities=26%  Similarity=0.463  Sum_probs=56.1

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccccee-eEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQAR-YSSKLQ  284 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~-~~~~L~  284 (286)
                      ++.+.|.|.+. |.|.|.+.|+|+|..+.......+....  +..|.|..+..+|+|.|+|.|.|.+|... .++.|.
T Consensus        22 ~~~v~l~C~~~-g~P~p~v~W~~ng~~i~~~~~~~~~~~~--~~~l~i~~~~~~d~G~Y~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          22 EEKVTLTCRAR-ANPPATYRWKMNGTELKMGPDSRYRLVA--GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLR   96 (97)
T ss_dssp             CCEEEECCEEE-EESCCEEEEEETTEECCCSTTSSEEEET--TEEEEESCCHHHHCEEEEEEEEETTEEEECCCEEEE
T ss_pred             CCeEEEEEEEE-EeCCCEEEEEEeeeeccCCCCceEEeee--eeEEEEecccccCCEEEEEEEEECCCEEEEEEEEEe
Confidence            45677777664 6677889999999988665444443322  45788999999999999999999999864 467775

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=5.8e-13  Score=93.16  Aligned_cols=37  Identities=19%  Similarity=0.282  Sum_probs=33.9

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...|.|.++..+|+|.|+|.|.|..|..++++.|.|.
T Consensus        67 ~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  103 (113)
T d2dava1          67 TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVH  103 (113)
T ss_dssp             EEEEEECSCCTTSCEEEEEEEECSSCEEEECCEEEEE
T ss_pred             EEEEEEccCCHHHCeEEEEEEEeCCCEEEEEEEEEEE
Confidence            3469999999999999999999999999999999873

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.41  E-value=4.4e-14  Score=97.64  Aligned_cols=79  Identities=18%  Similarity=0.332  Sum_probs=59.3

Q ss_pred             eEecccc-ccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667          5 LTYSFIE-QTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus         5 ~~~~~~~-~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      |...+.+ +.+.+|+.++|.|.+ .|.|.|.|.|+|||..+..  +.+....     ..+  ..|.|.+++.+|+|.|+|
T Consensus         6 F~~~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~-----~~~--~~L~I~~v~~~D~G~Y~C   78 (105)
T d1cs6a2           6 FSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVS-----QTT--GNLYIAKTEASDLGNYSC   78 (105)
T ss_dssp             CCSSCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEEC-----TTT--CCEEESSCCGGGCEEEEE
T ss_pred             ccCCCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeee-----cCC--CEEeecccccccCcEEEE
Confidence            4444444 689999999999987 6899999999999976643  3333221     111  148899999999999999


Q ss_pred             EEEcCCEEEE
Q psy15667         81 VAENRAGTCE   90 (286)
Q Consensus        81 ~a~n~~g~~~   90 (286)
                      .|.|..|...
T Consensus        79 ~a~N~~g~~~   88 (105)
T d1cs6a2          79 FATSHIDFIT   88 (105)
T ss_dssp             EEEEEETTEE
T ss_pred             EEEECCCCEE
Confidence            9999776543

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=9.8e-13  Score=90.98  Aligned_cols=80  Identities=26%  Similarity=0.377  Sum_probs=61.5

Q ss_pred             CCCCCeEEEEE---eeecCCCCCeEEEEeCCeeCCCCCCceeeecC------CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        205 LPEGARTRVIC---GVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD------SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c---~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~------~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +..|....+.|   .+ .|.|.|.+.|+|+|..+............      .....|.|.++..+|+|.|+|.|.|..|
T Consensus         9 ~~~g~~~~~~ci~~~v-~G~P~P~v~W~~ng~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N~~G   87 (107)
T d1he7a_           9 LHTAVEMHHWCIPFSV-DGQPAPSLRWLFNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFG   87 (107)
T ss_dssp             CCCCCCCCEEEEEEEE-CCSSCCEEEEEETTEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTE
T ss_pred             ECCCeEEEEEEEEEEE-EEecCCeEEEEEeeeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEeCCC
Confidence            44555555444   55 58999999999999999776554433211      1235699999999999999999999999


Q ss_pred             ceeeEEEEEE
Q psy15667        276 QARYSSKLQV  285 (286)
Q Consensus       276 ~~~~~~~L~V  285 (286)
                      ....++.|.|
T Consensus        88 ~~~~~i~v~v   97 (107)
T d1he7a_          88 QASASIMAAF   97 (107)
T ss_dssp             EEEEEEEECC
T ss_pred             EEEEEEEEEE
Confidence            9999888865

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=1.5e-14  Score=101.85  Aligned_cols=84  Identities=20%  Similarity=0.320  Sum_probs=63.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC--Cceeeec---CCCeeeEEEcccCCCC-CeEEEEEEEecccc
Q psy15667        203 DGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF--PVNVSDL---DSFSSLLSINSVSAAH-SGEYTCVASNTAAQ  276 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~--~~~~~~~---~~~~~~L~i~~v~~~d-~G~Y~C~a~N~~g~  276 (286)
                      ..+.+|+.+.|.|.+...+|++.+.|++++..+....  ++.+...   ......|.|.++..+| +|.|+|.|.|..|.
T Consensus        16 ~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y~C~A~N~~G~   95 (115)
T d2crya1          16 QHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIYNCTAWNSFGS   95 (115)
T ss_dssp             CCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCEEEEEECSSCE
T ss_pred             EEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEEEEEEEECCCe
Confidence            3456788888888876556777899999998876543  2222221   1123479999999999 79999999999999


Q ss_pred             eeeEEEEEEC
Q psy15667        277 ARYSSKLQVK  286 (286)
Q Consensus       277 ~~~~~~L~V~  286 (286)
                      .+..+.|.|+
T Consensus        96 ~~~~~~L~V~  105 (115)
T d2crya1          96 DTEIIRLKEQ  105 (115)
T ss_dssp             EEEEECCCCS
T ss_pred             EEEEEEEEEE
Confidence            9999988774

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.38  E-value=1.3e-13  Score=96.81  Aligned_cols=89  Identities=27%  Similarity=0.449  Sum_probs=67.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCCEEcCCC--CeeEeceEEecccceeEEEEEcccccCC-CeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDGFELPTN--NRFVIGQFVSGHGDVISHVNISHVTVED-GGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~~~l~~~--~~~~~~~~~~~~~~~~~~l~I~~~~~~D-~G~   77 (286)
                      ||.|. .+..+.+.+|+++.|.|.+.|. |.+.+.|++++..+..+  .++.+...... .+....|.|.++..+| +|.
T Consensus         7 Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~-~~~~s~L~I~~v~~~D~~G~   84 (115)
T d2crya1           7 PPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE-EGVISTLTISNIVRADFQTI   84 (115)
T ss_dssp             SCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEET-TEEEEEEECTTCCHHHHHSC
T ss_pred             CCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccc-cCcEEEEEEeccchhcCCeE
Confidence            78776 5777889999999999999985 55689999999988643  33433222222 2233469999999999 699


Q ss_pred             EEEEEEcCCEEEEEe
Q psy15667         78 YACVAENRAGTCEIT   92 (286)
Q Consensus        78 Y~C~a~n~~g~~~~~   92 (286)
                      |+|.|.|..|..+..
T Consensus        85 Y~C~A~N~~G~~~~~   99 (115)
T d2crya1          85 YNCTAWNSFGSDTEI   99 (115)
T ss_dssp             EEEEEECSSCEEEEE
T ss_pred             EEEEEEECCCeEEEE
Confidence            999999999987644

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.36  E-value=9.3e-14  Score=92.86  Aligned_cols=76  Identities=18%  Similarity=0.331  Sum_probs=60.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+  +.|.|.+.|+|||..+..+.++.+.... ....|.|.++..+|+|.|+|.|.|..+    ++.|
T Consensus        12 ~v~~G~~~~~~c~v--s~p~~~v~W~k~g~~i~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~c~a~n~~~----sa~l   84 (89)
T d1tiua_          12 EVFVGETAHFEIEL--SEPDVHGQWKLKGQPLTASPDCEIIEDG-KKHILILHNCQLGMTGEVSFQAANAKS----AANL   84 (89)
T ss_dssp             EEETTSCCCEEEBC--SSSSCCCBCCSSSCCCCSSSSCEEEECS-SCEEEECCSCCSCCCSEECCBCSSCBC----CEEE
T ss_pred             EEeCCCcEEEEEEE--CCCCcEEEEEEeeeecccceeEEEEeec-eeEEEEEcCCChhcCEEEEEEECceEE----EEEE
Confidence            46678888888876  4678899999999999888777776543 356899999999999999999987654    4566


Q ss_pred             EEC
Q psy15667        284 QVK  286 (286)
Q Consensus       284 ~V~  286 (286)
                      .|+
T Consensus        85 ~V~   87 (89)
T d1tiua_          85 KVK   87 (89)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            663

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=2e-12  Score=89.47  Aligned_cols=80  Identities=24%  Similarity=0.383  Sum_probs=55.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee---c--C------CCeeeEEEcccCCCCCe-EEEEEEEe
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---L--D------SFSSLLSINSVSAAHSG-EYTCVASN  272 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~---~--~------~~~~~L~i~~v~~~d~G-~Y~C~a~N  272 (286)
                      +.+|+.+.|.|.+. |.|.|.+.|+++|..+..........   .  .      ....+|.|.+++.+|.| .|+|.|.|
T Consensus        14 v~~G~~v~l~C~v~-g~P~p~i~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~g~~Y~C~A~N   92 (107)
T d1iray3          14 VDLGSQIQLICNVT-GQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKN   92 (107)
T ss_dssp             CCTTCCEEEEEEEE-ECTTCEEEEEETTEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGSSCEEEEEEC
T ss_pred             EeCCCEEEEEEEec-cCCCCeEEEEECCcccccccceeeeeeeeeccceeeecccceEEEEEeecchHHCCcEEEEEEEe
Confidence            45566666666654 55667777888877765443221111   0  0      11357999999999999 59999999


Q ss_pred             cccceeeEEEEEE
Q psy15667        273 TAAQARYSSKLQV  285 (286)
Q Consensus       273 ~~g~~~~~~~L~V  285 (286)
                      ..|....++.|..
T Consensus        93 ~~G~~~~~i~L~~  105 (107)
T d1iray3          93 THGIDAAYIQLIY  105 (107)
T ss_dssp             SSCEEEEEEEEEC
T ss_pred             CCCeEEEEEEEEC
Confidence            9999999988863

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=3e-13  Score=92.87  Aligned_cols=83  Identities=22%  Similarity=0.362  Sum_probs=57.8

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC----CCCeeEece--EEecccceeEEEEEcccccCCCe
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP----TNNRFVIGQ--FVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~----~~~~~~~~~--~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      |.+.....+..+.+|++++|.|.+.|.|.|.+.|++++..+.    .+.+.....  ......   .+|.|.+++.+|+|
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~tL~I~~v~~~D~G   78 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS---SGITFSSVTRKDNG   78 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET---TEEEESCCCGGGCE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecC---CEEEEeECCccCCE
Confidence            445556677889999999999999999999999998643321    111110000  000011   24899999999999


Q ss_pred             EEEEEEEcCCEE
Q psy15667         77 EYACVAENRAGT   88 (286)
Q Consensus        77 ~Y~C~a~n~~g~   88 (286)
                      .|+|.|.|..|.
T Consensus        79 ~Y~C~a~n~~g~   90 (102)
T d1f97a1          79 EYTCMVSEEGGQ   90 (102)
T ss_dssp             EEEEEEEETTSS
T ss_pred             EEEEEEEECCCC
Confidence            999999997764

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=6.4e-13  Score=90.96  Aligned_cols=68  Identities=25%  Similarity=0.339  Sum_probs=56.3

Q ss_pred             ccccCCCcEEEEE------EeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         12 QTLQPGPAVSLKC------IASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        12 ~~~~~G~~~~l~C------~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      |.+..|+...|.|      .+.++|.|.|.|++||++|..+.+....     .++   .|.|.+++.+|+|.|+|.|.|.
T Consensus         9 q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg~~l~~~~~~~~~-----~~~---~L~I~~v~~~D~G~Y~C~a~n~   80 (103)
T d1iray2           9 QKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSG-----VKD---RLIVMNVAEKHRGNYTCHASYT   80 (103)
T ss_dssp             EEEESSSCEEEECTTGGGGCBTTTBCCCCEEEETTEECCCCSSSEEE-----ETT---EEEESSCCGGGCEEEEEEEEEE
T ss_pred             EEEecCCCEEEEcCCccccccCCCCCCEEEEEECCccccCCCcEEEe-----cCC---EEEEcccccccCcEEEEEEEEC
Confidence            6789999999999      6789999999999999999866543221     122   4889999999999999999986


Q ss_pred             CE
Q psy15667         86 AG   87 (286)
Q Consensus        86 ~g   87 (286)
                      .|
T Consensus        81 ~~   82 (103)
T d1iray2          81 YL   82 (103)
T ss_dssp             ET
T ss_pred             cC
Confidence            54

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=4.3e-13  Score=92.59  Aligned_cols=83  Identities=10%  Similarity=0.115  Sum_probs=58.5

Q ss_pred             CCe-eEeccccccccCCCcEEEEEEeec-C--CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667          2 PPI-LTYSFIEQTLQPGPAVSLKCIASG-N--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~-~~~~~~~~~~~~G~~~~l~C~~~g-~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      ||. +.+.+....+.+|+.++|+|.+.| .  |.++++|++||..|..+......   .........|.|.....+|.|.
T Consensus         1 PP~~v~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~---~~~~~~~s~l~~~~~~~d~g~~   77 (106)
T d1zxqa1           1 PPRQVILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAA---PAPQEATATFNSTADREDGHRN   77 (106)
T ss_dssp             CCCCCEEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSST---TCTTCEEEEEEEECCGGGGGCE
T ss_pred             CCcCCEecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEe---ecccceeEEEEEeeehhcCCcE
Confidence            444 446777788999999999999986 4  44589999999988643322211   1122233457777778888889


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|+|+|..+
T Consensus        78 ytC~A~n~~~   87 (106)
T d1zxqa1          78 FSCLAVLDLM   87 (106)
T ss_dssp             EEEEEEEECG
T ss_pred             EEEEEEecCC
Confidence            9999999654

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.32  E-value=1.1e-12  Score=89.89  Aligned_cols=78  Identities=15%  Similarity=0.177  Sum_probs=58.5

Q ss_pred             CCCCCCeEEEEEeeecCCCCC--eEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSS  281 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~  281 (286)
                      .+.+|+.+.|.|.+..+.|.+  ++.|+|+++.+.....    .......+|.|..+..+|+|.|+|.|.|.+|......
T Consensus        15 ~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~l~~~~~----~~~~~~s~l~i~~~~~dd~g~ytC~A~n~~g~~~~~~   90 (103)
T d1iama1          15 WQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKELKREPA----VGEPAEVTTTVLVRRDHHGAQFSCRTELDLRPQGLEL   90 (103)
T ss_dssp             EECTTSEEEEEEEEECCBCGGGEEEEEEETTEEEEEEEC----CTTTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCE
T ss_pred             eEeCCCEEEEEEEecCCCCCCceEEEEcccccccccccc----ccccceEEEEEeeehhHCCCEEEEEEEeCCCCccCeE
Confidence            366888888888887777765  5789999988743211    1122356899999999999999999999999876665


Q ss_pred             EEEE
Q psy15667        282 KLQV  285 (286)
Q Consensus       282 ~L~V  285 (286)
                      .+.+
T Consensus        91 ~~~~   94 (103)
T d1iama1          91 FENT   94 (103)
T ss_dssp             EEEE
T ss_pred             eeeE
Confidence            5544

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.29  E-value=2.5e-12  Score=88.53  Aligned_cols=35  Identities=23%  Similarity=0.469  Sum_probs=31.6

Q ss_pred             eeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ..|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        68 ~~L~I~~v~~~D~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          68 TGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             TEEECSCCCTTSCSEEEEEEEETTSSCEECCEEEC
T ss_pred             ceEEEecccccceeeEEEEEEECCCCEEEEEEEEE
Confidence            47999999999999999999999999887777765

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.28  E-value=2.2e-11  Score=83.21  Aligned_cols=90  Identities=22%  Similarity=0.399  Sum_probs=58.8

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~  240 (286)
                      +.+.+.+|+++.|.|.+.+.|.|.|.|.+........                             =..++..... ..+
T Consensus         9 ~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~-----------------------------~~~~~~~~~~~~~~   59 (102)
T d1f97a1           9 SDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTAL-----------------------------VCYNSQITAPYADR   59 (102)
T ss_dssp             SEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEE-----------------------------EEETTEECGGGTTT
T ss_pred             CcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceee-----------------------------eccccccccceeeE
Confidence            3466778999999999988888888887643221100                             0011111110 111


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...     .+.+|.|.++..+|+|.|+|.|.|..|.....+.|.|
T Consensus        60 ~~~-----~~~tL~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~v~v   99 (102)
T d1f97a1          60 VTF-----SSSGITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHL   99 (102)
T ss_dssp             EEE-----ETTEEEESCCCGGGCEEEEEEEEETTSSSEEEEEEEE
T ss_pred             EEe-----cCCEEEEeECCccCCEEEEEEEEECCCCEEEEEEEEE
Confidence            111     1347999999999999999999999998777766654

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.26  E-value=1.4e-12  Score=90.60  Aligned_cols=79  Identities=22%  Similarity=0.234  Sum_probs=56.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee---cCCCeeeEEEcccCCCCCe---EEEEEEEeccccee
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD---LDSFSSLLSINSVSAAHSG---EYTCVASNTAAQAR  278 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~---~~~~~~~L~i~~v~~~d~G---~Y~C~a~N~~g~~~  278 (286)
                      +.+|+.+.|.|.+..|.|.|.+.|+|++..+..........   .....++|.|.+++.+|+|   .|+|.|.|.+|...
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~gd~g~Y~C~A~N~~g~~~   93 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEE   93 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSC
T ss_pred             ccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccccccEEeeeEeeccCCceEEEEEEEeCCCCce
Confidence            45788888888876688888999999877653321111110   1122467999999999887   69999999999887


Q ss_pred             eEEEE
Q psy15667        279 YSSKL  283 (286)
Q Consensus       279 ~~~~L  283 (286)
                      ....+
T Consensus        94 ~~~~~   98 (111)
T d1biha2          94 VVLVE   98 (111)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            66543

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.25  E-value=2.8e-12  Score=88.44  Aligned_cols=82  Identities=11%  Similarity=0.119  Sum_probs=57.0

Q ss_pred             CCCCCCCeEEEEEeeecCCC--CCeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccceee
Q psy15667        203 DGLPEGARTRVICGVTHGDP--PLTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQARY  279 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p--~~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~  279 (286)
                      ..+.+|+.+.|.|.+.++.|  .+++.|+|||+.+........... .....+|.|.....+|.|.|+|+|.|.+|....
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~~~i~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~ytC~A~n~~~~~~~   91 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLDSLTLFLFRGNETLHYETFGKAAPAPQEATATFNSTADREDGHRNFSCLAVLDLMSRGG   91 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGGGEEEEEEETTEEEEEEECCSSTTCTTCEEEEEEEECCGGGGGCEEEEEEEEECGGGTC
T ss_pred             CEEeCCCEEEEEEEEeCcccCCCceEEEEcCCEEeeecccceEeecccceeEEEEEeeehhcCCcEEEEEEEecCCCCCC
Confidence            34778999999999987664  458999999998753322221111 122346777777888889999999999886554


Q ss_pred             EEEEE
Q psy15667        280 SSKLQ  284 (286)
Q Consensus       280 ~~~L~  284 (286)
                      ...+.
T Consensus        92 ~~~~~   96 (106)
T d1zxqa1          92 NIFHK   96 (106)
T ss_dssp             CEEEE
T ss_pred             eeEec
Confidence            44443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=4.9e-12  Score=86.29  Aligned_cols=76  Identities=22%  Similarity=0.281  Sum_probs=57.5

Q ss_pred             cccccccCCCcEEEEEEee-cCCCCeeEEeeCCEEcCC--CCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667          9 FIEQTLQPGPAVSLKCIAS-GNPTPDIGWTLDGFELPT--NNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~-g~p~p~v~W~~~~~~l~~--~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      +...++.+|+.+.|.|.+. +.|.+.|.|+|+|..+..  ..+..+.    ..+.   .|.|.+++.+|+|.|+|.|.|.
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~----~~~~---~L~I~~v~~~D~G~Y~C~a~N~   81 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIH----QHKE---KLWFVPAKVEDSGHYYCVVRNS   81 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSEE----EETT---EEEETTCCGGGCEEEEEEEEET
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEEe----ccCC---EEEeccceecCCEEEEEEEECC
Confidence            4445778999999999775 789999999999876542  2222111    1122   4899999999999999999999


Q ss_pred             CEEEEE
Q psy15667         86 AGTCEI   91 (286)
Q Consensus        86 ~g~~~~   91 (286)
                      .|....
T Consensus        82 ~g~~~~   87 (101)
T d1iray1          82 SYCLRI   87 (101)
T ss_dssp             TEEEEE
T ss_pred             CCeEEE
Confidence            998754

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.24  E-value=7.8e-12  Score=82.49  Aligned_cols=69  Identities=22%  Similarity=0.394  Sum_probs=52.9

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .+.+|+.+.|.|.+....++..+.|+|||..+...           ...|.|.+++.+|+|.|+|.|.|..++..  +.|
T Consensus        15 ~v~~G~~v~L~C~~~~~~~~~~~~w~~~g~~~~~~-----------~~~l~i~~v~~~dsG~Y~C~a~ns~~S~~--v~l   81 (85)
T d2fcba1          15 NVLQEDSVTLTCRGTHSPESDSIQWFHNGNLIPTH-----------TQPSYRFKANNNDSGEYTCQTGQTSLSDP--VHL   81 (85)
T ss_dssp             EEETTCEEEEEEECSSCCCTTCCEEEETTEECTTC-----------CSSEEEEECCGGGCEEEEEECTTSBCCCC--EEE
T ss_pred             EEcCCCeEEEEEEEeeccceeEEEeeccccccccc-----------ccceEEeeccccCCcEEEEECCCCccccc--EEE
Confidence            36678888888877654455578899999987532           34689999999999999999999877554  455


Q ss_pred             EE
Q psy15667        284 QV  285 (286)
Q Consensus       284 ~V  285 (286)
                      .|
T Consensus        82 ~V   83 (85)
T d2fcba1          82 TV   83 (85)
T ss_dssp             EE
T ss_pred             EE
Confidence            54

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.21  E-value=1e-12  Score=91.34  Aligned_cols=77  Identities=26%  Similarity=0.340  Sum_probs=53.4

Q ss_pred             cccccCCCcEEEEEEe-ecCCCCeeEEeeCCEEcCCCCeeEec-eEEecccceeEEEEEcccccCCCe---EEEEEEEcC
Q psy15667         11 EQTLQPGPAVSLKCIA-SGNPTPDIGWTLDGFELPTNNRFVIG-QFVSGHGDVISHVNISHVTVEDGG---EYACVAENR   85 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~-~g~p~p~v~W~~~~~~l~~~~~~~~~-~~~~~~~~~~~~l~I~~~~~~D~G---~Y~C~a~n~   85 (286)
                      +.++.+|++++|.|.+ .|.|.|.+.|+|++..+....+.... .......+  ..|.|.+++.+|+|   .|.|.|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~--~~L~i~~v~~~D~gd~g~Y~C~A~N~   88 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPD--GNLYFTIVTKEDVSDIYKYVCTAKNA   88 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTT--SCEEEEEECGGGCCSSEEEEEEEECT
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeeccccc--cccEEeeeEeeccCCceEEEEEEEeC
Confidence            4467899999999986 89999999999987665322211100 00011111  13889999998877   799999998


Q ss_pred             CEEE
Q psy15667         86 AGTC   89 (286)
Q Consensus        86 ~g~~   89 (286)
                      .|..
T Consensus        89 ~g~~   92 (111)
T d1biha2          89 AVDE   92 (111)
T ss_dssp             TCSS
T ss_pred             CCCc
Confidence            7643

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.16  E-value=1.9e-11  Score=80.36  Aligned_cols=68  Identities=19%  Similarity=0.365  Sum_probs=45.8

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+....++..+.|+++|..+...           ...|.|.+++.+|+|.|+|.|.|+.++.  .+.|+
T Consensus        17 v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~~~~~d~G~Y~C~a~~s~~S~--~v~L~   83 (84)
T d1fnla1          17 VLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQ-----------ASSYFIDAATVNDSGEYRCQTNLSTLSD--PVQLE   83 (84)
T ss_dssp             EETTCCEEEEEECCCBTTBCCCEEEETTEEEESS-----------CSEEEESSCCGGGCEEEEEECSSSCCCC--CEEEE
T ss_pred             EeCCCeEEEEEEeccCCCCeEEEEeeeceeeeec-----------ceeeEecCCcccCCEEEEEEccCCCccc--cEEEE
Confidence            4455555555555422333345678888765322           3478999999999999999999986643  45565


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        84 V   84 (84)
T d1fnla1          84 V   84 (84)
T ss_dssp             E
T ss_pred             C
Confidence            5

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.14  E-value=2.1e-11  Score=79.71  Aligned_cols=68  Identities=21%  Similarity=0.356  Sum_probs=47.1

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQ  284 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~  284 (286)
                      +.+|+.+.|.|.+....++..+.|++++..+...           ...|.|.+++.+|+|.|.|.|.|..++.  .+.|.
T Consensus        13 v~~G~~v~L~C~~~~~~~~~~~~~~~~~~~~~~~-----------~~~l~i~~v~~~d~G~Y~C~a~~s~~S~--~v~l~   79 (82)
T d1f2qa1          13 IFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEET-----------NSSLNIVNAKFEDSGEYKCQHQQVNESE--PVYLE   79 (82)
T ss_dssp             EETTCCEEEECCTTCC----CCEEEETTEECSCC-----------SSEEEECSCCGGGCEEEEEECTTSSCCC--CEEEE
T ss_pred             EeCCCeEEEEEEEeeeeeecceeeeeeeeeeecc-----------cceeEECCCChhhCCcEEEEecCCCCcc--cEEEE
Confidence            4566667777766533333356688998876432           3468999999999999999999987654  45565


Q ss_pred             E
Q psy15667        285 V  285 (286)
Q Consensus       285 V  285 (286)
                      |
T Consensus        80 V   80 (82)
T d1f2qa1          80 V   80 (82)
T ss_dssp             E
T ss_pred             E
Confidence            5

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.98  E-value=2.4e-10  Score=76.44  Aligned_cols=34  Identities=24%  Similarity=0.303  Sum_probs=28.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +..|.|.+++++|+|.|.|.|.|..+..+  +.|.|
T Consensus        59 ~~sL~I~~l~~~DsG~Y~c~~~n~~~t~~--~~l~V   92 (93)
T d1ccza1          59 SGSLTIYNLTSSDEDEYEMESPNITDTMK--FFLYV   92 (93)
T ss_dssp             TCCEEECSCCGGGCEEEEEECTTCCSCEE--EEEEE
T ss_pred             eeEEEEEecChhhCEEEEEEEECCCcEEE--EEEEE
Confidence            56799999999999999999999888665  44544

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.96  E-value=1.7e-10  Score=77.30  Aligned_cols=77  Identities=16%  Similarity=0.140  Sum_probs=52.4

Q ss_pred             cccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCC--CCeeEece-----EEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPT--NNRFVIGQ-----FVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~--~~~~~~~~-----~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      ++....|++|+|.|.+ +.|.+.|.|++++..+..  ........     ......+  .+|.|.+++.+|+|.|+|+|.
T Consensus         4 ~v~~~~G~sVtl~c~~-~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~sL~I~~l~~~DsG~Y~c~~~   80 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPS-NVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVS--GSLTIYNLTSSDEDEYEMESP   80 (93)
T ss_dssp             EEEEETTCCEEECCCC-SSCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTT--CCEEECSCCGGGCEEEEEECT
T ss_pred             EEEEEECCCEEEEecC-CCCCcEEEEEEeccccceeeecceeeCCCccceEEEcCCe--eEEEEEecChhhCEEEEEEEE
Confidence            3567899999999976 468899999999876521  11111000     0000111  259999999999999999998


Q ss_pred             cCCEEEE
Q psy15667         84 NRAGTCE   90 (286)
Q Consensus        84 n~~g~~~   90 (286)
                      |..+..+
T Consensus        81 n~~~t~~   87 (93)
T d1ccza1          81 NITDTMK   87 (93)
T ss_dssp             TCCSCEE
T ss_pred             CCCcEEE
Confidence            8766543

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.83  E-value=2.4e-09  Score=72.12  Aligned_cols=36  Identities=19%  Similarity=0.320  Sum_probs=31.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccce--eeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQA--RYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~--~~~~~L~V  285 (286)
                      ++.|.|.+++.+|+|.|+|.+.|..|..  ..++.|.|
T Consensus        59 ngSL~I~nl~~~DsG~Y~c~v~~~~g~~~~~~~~~L~V   96 (98)
T d1hnga1          59 NGDLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRI   96 (98)
T ss_dssp             TSCEEESSCCGGGCEEEEEEEEETTCCEEEEEEEEEEE
T ss_pred             CccEEEeCCCHHHCEEEEEEEEeCCCCEEEEEEEEEEE
Confidence            4679999999999999999999999876  56666766

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.67  E-value=7.9e-08  Score=67.53  Aligned_cols=37  Identities=27%  Similarity=0.435  Sum_probs=33.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      +..|.|.+++.+|+|.|.|.+.|..|....++.|.|+
T Consensus        80 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~  116 (126)
T d1pkoa_          80 KVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVE  116 (126)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEEEchhHCeEEEEEEEECCCEEEEEEEEEEe
Confidence            5689999999999999999999999988888888873

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.66  E-value=1.9e-07  Score=63.35  Aligned_cols=97  Identities=15%  Similarity=0.174  Sum_probs=59.1

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~  240 (286)
                      +.+.+.+|++++|.|.........+.|.+..+.              ...             ....+.+...... ..+
T Consensus         8 ~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g--------------~~~-------------~~~~~~~~~~~~~~~~~   60 (106)
T d1a0ql1           8 SSLSASLGGKVTITCKASQDIKKYIGWYQHKPG--------------KQP-------------RLLIHYTSTLLPGIPSR   60 (106)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--------------SCE-------------EEEEETTTEECTTCCTT
T ss_pred             CEEEECCCCCEEEEEEcCCCCCCCeEEEECCCC--------------CcE-------------EEEEEccccccCCCCcc
Confidence            346677999999999887666667899884321              111             1111222211111 112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      .... .......|.|.++.++|+|.|.|.+.+..-.-..-..|+||
T Consensus        61 ~~~~-~s~~~~~L~I~~~~~~DsA~YyCa~~~~~~~FG~GT~LtVk  105 (106)
T d1a0ql1          61 FRGS-GSGRDYSFSISNLEPEDIATYYCLQYYNLRTFGGGTKLEIK  105 (106)
T ss_dssp             EEEE-EETTEEEEEECSCCGGGCSEEEEEECSSSCEECCCEEEEEC
T ss_pred             eEee-cCCCEeeeEehhhcccCCEeEEEEEeCCCCeECCCeEEEEc
Confidence            2222 12335689999999999999999887655444455667775

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.64  E-value=9.1e-08  Score=66.84  Aligned_cols=78  Identities=19%  Similarity=0.313  Sum_probs=54.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEcCC----------C------------CeeEeceEEec
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFELPT----------N------------NRFVIGQFVSG   57 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l~~----------~------------~~~~~~~~~~~   57 (286)
                      .|.+...|...++.+|++++|.|.+.+...+.+.|++.  |..+..          .            .++...   . 
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~---~-   76 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAM---R-   76 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEE---E-
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEE---C-
Confidence            47788889999999999999999998887788999872  222110          0            011100   0 


Q ss_pred             ccceeEEEEEcccccCCCeEEEEEEE
Q psy15667         58 HGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        58 ~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      ..+....|+|.+++.+|+|.|.|.+.
T Consensus        77 ~~~~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          77 DTNNKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             ETTTEEEEEESSCCGGGCEEEEEEEE
T ss_pred             CCCCEeEEEEcccccCCCEEEEeeEe
Confidence            11122369999999999999999764

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.62  E-value=6.5e-08  Score=65.93  Aligned_cols=73  Identities=11%  Similarity=0.106  Sum_probs=46.7

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCEEcC---------C------CCeeEeceEEecccceeEEEEEcccccCCCe
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGFELP---------T------NNRFVIGQFVSGHGDVISHVNISHVTVEDGG   76 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~---------~------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G   76 (286)
                      ..+.+|++|+|.|.........+.|+|......         .      ...|.-......++    +|.|.+++.+|+|
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng----SL~I~~v~~~D~G   84 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG----SLLFQMITMKDMG   84 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS----CEEECSCCGGGCE
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc----cEEEcCCCchhCE
Confidence            457799999999975444456899998543211         0      01110001111122    4899999999999


Q ss_pred             EEEEEEEcCCEE
Q psy15667         77 EYACVAENRAGT   88 (286)
Q Consensus        77 ~Y~C~a~n~~g~   88 (286)
                      .|+|++.+..+.
T Consensus        85 ~Y~c~v~~~~~~   96 (107)
T d1l6za1          85 VYTLDMTDENYR   96 (107)
T ss_dssp             EEEEEEEETTEE
T ss_pred             EEEEEEEECCCC
Confidence            999999876543

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=1.6e-08  Score=67.78  Aligned_cols=76  Identities=21%  Similarity=0.258  Sum_probs=49.1

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeCCE--EcC--------CC----CeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLDGF--ELP--------TN----NRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~--~l~--------~~----~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      +...+|++|+|.|.........+.|++...  .+.        .+    .|+....  ........+|.|.+++.+|+|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~~sL~I~~l~~~DsG~   81 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRR--SLWDQGNFPLIIKNLKIEDSDT   81 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCG--GGGGGTBCCEEECSCCGGGCEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEe--ccCCCCEEEEEECCCChHHCEE
Confidence            345799999999988777777899997532  110        01    1111000  0011112359999999999999


Q ss_pred             EEEEEEcCCEEE
Q psy15667         78 YACVAENRAGTC   89 (286)
Q Consensus        78 Y~C~a~n~~g~~   89 (286)
                      |.|.+.+.....
T Consensus        82 Y~C~v~~~~~~v   93 (97)
T d2nxyb1          82 YICEVEDQKEEV   93 (97)
T ss_dssp             EEEEETTEEEEE
T ss_pred             EEEEEecCCeEE
Confidence            999998765443

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.60  E-value=1.1e-07  Score=66.85  Aligned_cols=76  Identities=21%  Similarity=0.327  Sum_probs=47.8

Q ss_pred             ccccCCCcEEEEEEeecC---CCCeeEEeeCCEE----c-------C--CC----CeeEeceEEecccceeEEEEEcccc
Q psy15667         12 QTLQPGPAVSLKCIASGN---PTPDIGWTLDGFE----L-------P--TN----NRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~---p~p~v~W~~~~~~----l-------~--~~----~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      +++.+|++++|.|...+.   ....+.|++++..    +       .  ..    .|....  .........+|.|.+++
T Consensus        12 V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~sL~I~~v~   89 (126)
T d1pkoa_          12 IRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELL--KESIGEGKVALRIQNVR   89 (126)
T ss_dssp             EEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEE--CTTGGGTEEEEEESSCC
T ss_pred             EEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEe--eccccCCeEEEEEEEEc
Confidence            577899999999987643   2346899986421    0       0  00    111110  00001113469999999


Q ss_pred             cCCCeEEEEEEEcCCEEE
Q psy15667         72 VEDGGEYACVAENRAGTC   89 (286)
Q Consensus        72 ~~D~G~Y~C~a~n~~g~~   89 (286)
                      .+|+|.|.|.+.+..+..
T Consensus        90 ~~D~G~Y~C~v~~~~~~~  107 (126)
T d1pkoa_          90 FSDEGGYTCFFRDHSYQE  107 (126)
T ss_dssp             GGGCEEEEEEEEETTEEE
T ss_pred             hhHCeEEEEEEEECCCEE
Confidence            999999999998876654

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.59  E-value=2.7e-08  Score=66.79  Aligned_cols=69  Identities=19%  Similarity=0.312  Sum_probs=48.0

Q ss_pred             cccCCCcEEEEEEee--cCCCCeeEEeeCCEEcC----------CCCeeEeceEEecccceeEEEEEcccccCCCeEEEE
Q psy15667         13 TLQPGPAVSLKCIAS--GNPTPDIGWTLDGFELP----------TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYAC   80 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~--g~p~p~v~W~~~~~~l~----------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C   80 (286)
                      .-..|++|+|.|...  ..+..+|.|++++..+.          .+.++.+    ..++    +|.|.+++.+|+|.|+|
T Consensus         6 ~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~----~~ng----SL~I~nl~~~DsG~Y~c   77 (98)
T d1hnga1           6 WGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI----LANG----DLKIKNLTRDDSGTYNV   77 (98)
T ss_dssp             EEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE----CTTS----CEEESSCCGGGCEEEEE
T ss_pred             EEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEE----CCCc----cEEEeCCCHHHCEEEEE
Confidence            346799999999532  22345799999887652          1112211    1122    48999999999999999


Q ss_pred             EEEcCCEEE
Q psy15667         81 VAENRAGTC   89 (286)
Q Consensus        81 ~a~n~~g~~   89 (286)
                      ++.+..|..
T Consensus        78 ~v~~~~g~~   86 (98)
T d1hnga1          78 TVYSTNGTR   86 (98)
T ss_dssp             EEEETTCCE
T ss_pred             EEEeCCCCE
Confidence            999887754

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.57  E-value=2.4e-07  Score=63.49  Aligned_cols=78  Identities=22%  Similarity=0.372  Sum_probs=54.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC--C----EEcCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--G----FELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~----~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      ++...|..+++.+|++++|.|...+.  ....+.|++.  |    ..+..+.++.....   .+.....|.|.+++.+|+
T Consensus         1 rV~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~---~~~~~~~L~I~~l~~~Ds   77 (112)
T d1sq2n_           1 RVDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVN---SGSKSFSLRINDLTVEDG   77 (112)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGC
T ss_pred             CCEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEe---cCCceeeeEecCCcCccC
Confidence            35667778889999999999987643  4567899973  2    22344555543221   222234699999999999


Q ss_pred             eEEEEEEEc
Q psy15667         76 GEYACVAEN   84 (286)
Q Consensus        76 G~Y~C~a~n   84 (286)
                      |.|.|.+..
T Consensus        78 a~YyCA~~~   86 (112)
T d1sq2n_          78 GTYRCGLGV   86 (112)
T ss_dssp             EEEEEEECB
T ss_pred             EEEeEEEec
Confidence            999996654

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.56  E-value=3.2e-07  Score=63.99  Aligned_cols=36  Identities=17%  Similarity=0.359  Sum_probs=32.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|.|.+.|..|.....+.|.|
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V  122 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVV  122 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEE
Confidence            457999999999999999999999998888888887

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.56  E-value=3.2e-07  Score=63.08  Aligned_cols=78  Identities=24%  Similarity=0.419  Sum_probs=55.3

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeC--CE----EcCCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GF----ELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~----~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      .+...|...++.+|++|+|.|...+.  +...+.|++.  +.    .+....++.....   .+.....|+|.+++.+|+
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVN---KGSKSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEE---TTTTEEEEEECSCCGGGC
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeE---CCCCceeeeecccccCCc
Confidence            45667888899999999999988753  4456889963  22    2334556654321   222334699999999999


Q ss_pred             eEEEEEEEc
Q psy15667         76 GEYACVAEN   84 (286)
Q Consensus        76 G~Y~C~a~n   84 (286)
                      |.|.|.+..
T Consensus        79 a~YyCa~~~   87 (113)
T d1vesa_          79 GTYKCQAFY   87 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEeeeeec
Confidence            999997753

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.55  E-value=4.8e-08  Score=66.65  Aligned_cols=36  Identities=14%  Similarity=0.258  Sum_probs=30.1

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V  285 (286)
                      ++.|.|.+++.+|+|.|+|.+.+.- +....++.|.|
T Consensus        70 ngSL~I~~v~~~D~G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          70 NGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             TSCEEECSCCGGGCEEEEEEEEETTEEECCCCEEECC
T ss_pred             cccEEEcCCCchhCEEEEEEEEECCCCEEEEEEEEEE
Confidence            5689999999999999999998875 55666777765

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.54  E-value=8e-08  Score=64.54  Aligned_cols=71  Identities=10%  Similarity=0.161  Sum_probs=41.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      |..|+.+.|.|...  .+...+.|+|+|....................+.|.+|..+|+|.|.|...|..+..
T Consensus        18 V~~G~~VTL~C~~~--~~~~~f~l~k~g~~~~~~~~~~~~~~~~~~a~F~l~~vt~~~~G~Y~C~y~~~~~~S   88 (99)
T d1ucta1          18 IPLDGSVKIQCQAI--REAYLTQLMIIKNSTYREIGRRLKFWNETDPEFVIDHMDANKAGRYQCQYRIGHYRF   88 (99)
T ss_dssp             EETTCCEEEEECCC--TTCSEEEEEEEETTEEEECSEECC----CCCEEEECSCCGGGCEEEEEEEEETTTEE
T ss_pred             eeCCCeEEEEEcCC--CCCcEEEEEECCCcCceeccccccCCCCceEEEEecCCCHHHCceEEEEEECCCccc
Confidence            44556666666432  345677888877522111000000011223468899999999999999999987644

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.49  E-value=1.3e-06  Score=59.30  Aligned_cols=97  Identities=21%  Similarity=0.262  Sum_probs=56.6

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-CCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~-~~~~  240 (286)
                      +.+.+.+|++++|.|.........+.|.+..+.              ..             +.+..+....... ...+
T Consensus         9 ~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g--------------~~-------------~~~l~~~~~~~~~~~~~~   61 (107)
T d1j1pl_           9 ATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSH--------------ES-------------PRLLIKYASQSISGIPSR   61 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--------------SC-------------CEEEEETTTEECTTSCTT
T ss_pred             CeEEECCCCCEEEEEEecCCCCcceEEEEeCCC--------------Cc-------------cEEeeecccCCCceeCCc
Confidence            356778999999999887665667999985422              11             1111221111111 1112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      +.... ......|.|.+++++|+|.|.|.+.+.. -.-..-..|+||
T Consensus        62 fs~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  107 (107)
T d1j1pl_          62 FSGSG-SGTDFTLSINSVETEDFGMYFCQQANSWPYTFGGGTKLEIK  107 (107)
T ss_dssp             EEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ceecc-cCCEEEEEEcccCcCCCEEEEEEcCCCCccEECCCeEEEEC
Confidence            22221 2335689999999999999999766542 122233466665

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.49  E-value=3.6e-07  Score=62.89  Aligned_cols=76  Identities=26%  Similarity=0.368  Sum_probs=52.2

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC-CCCeeEEeeCC--EE---c---C------------CCCeeEeceEEeccccee
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLDG--FE---L---P------------TNNRFVIGQFVSGHGDVI   62 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~~--~~---l---~------------~~~~~~~~~~~~~~~~~~   62 (286)
                      .+...|.+.++.+|++|+|.|...+. ....+.|++..  ..   +   .            ...|+...    ..+. .
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~----~~~~-~   76 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGK----RLGD-T   76 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEE----EETT-E
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEE----CCCC-C
Confidence            46788999999999999999987653 34568999732  11   1   0            01222221    1122 3


Q ss_pred             EEEEEcccccCCCeEEEEEEEc
Q psy15667         63 SHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        63 ~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        77 ~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          77 FVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             hhcEEccCCCCCCEEEeEeEcC
Confidence            4699999999999999998764

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.45  E-value=9e-07  Score=60.84  Aligned_cols=86  Identities=17%  Similarity=0.330  Sum_probs=51.7

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-                          .+..+.....+.......++.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~--------------------------~~~~l~~~~~~~~~~~~~~~~   62 (114)
T d2cdea1           9 SLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGR--------------------------GPVSLTIMTFSENTKSNGRYT   62 (114)
T ss_dssp             EEEEETTCCCEEEEEECCSCCSEEEEEEECTTS--------------------------CCCEEEEECSSCSCEEETTEE
T ss_pred             EEEEeCCCCEEEEEEEcCCCccCceEEEecCCC--------------------------ceEEeeeeeeeecccccCccc
Confidence            466779999999999887666789998854321                          111111111111110111111


Q ss_pred             eee-cCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        243 VSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       243 ~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ... .......|.|.++..+|+|.|.|.+.+..
T Consensus        63 ~~~~~~~~~~sL~i~~~~~~Dsg~Y~Ca~~~~~   95 (114)
T d2cdea1          63 ATLDADTKQSSLHITASQLSDSASYICVVSDRG   95 (114)
T ss_dssp             ECBCSSSSEEEEEECSCCGGGCSEEEEEEECSC
T ss_pred             eeecCcccccccEEcccChhhCcccceeeecCC
Confidence            111 11235679999999999999999998753

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.43  E-value=2.6e-07  Score=63.62  Aligned_cols=79  Identities=20%  Similarity=0.365  Sum_probs=54.5

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCC--EE---c---C------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDG--FE---L---P------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~--~~---l---~------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .+...|...++.+|++|+|.|.....+...+.|++..  ..   |   .      ...++....   .......+|.|.+
T Consensus         2 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~---~~~~~~~sL~i~~   78 (114)
T d2cdea1           2 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL---DADTKQSSLHITA   78 (114)
T ss_dssp             CEEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB---CSSSSEEEEEECS
T ss_pred             ccEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee---cCcccccccEEcc
Confidence            3566788889999999999999877666789999732  11   1   0      112232211   1122345699999


Q ss_pred             cccCCCeEEEEEEEcC
Q psy15667         70 VTVEDGGEYACVAENR   85 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n~   85 (286)
                      ++.+|+|.|.|.+...
T Consensus        79 ~~~~Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          79 SQLSDSASYICVVSDR   94 (114)
T ss_dssp             CCGGGCSEEEEEEECS
T ss_pred             cChhhCcccceeeecC
Confidence            9999999999988663

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.43  E-value=6.5e-07  Score=61.55  Aligned_cols=77  Identities=25%  Similarity=0.263  Sum_probs=51.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeC--CE-E--c----------CCCCeeEeceEEecccceeEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD--GF-E--L----------PTNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~--~~-~--l----------~~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +...|..+++.+|++|+|.|...+. ....+.|++.  |. +  |          ..+.|+....  ... .....|.|.
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~--~~~-~~~~~L~I~   78 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQ--LPN-RHDFHMNIL   78 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEE--CTT-SSEEEEEES
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEE--eCC-CCEEEEEEC
Confidence            4567788899999999999987653 3456889972  22 1  1          1233443321  111 123469999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          79 DTRRNDSGIYLCGAIS   94 (114)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCcCCCeEEEEEEEe
Confidence            9999999999997654

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.43  E-value=5.2e-07  Score=61.15  Aligned_cols=75  Identities=27%  Similarity=0.445  Sum_probs=51.4

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|....+.+|++|+|.|.........+.|++.  |..+            ....|+..+    ..++ ...|+|.++
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~----~~~~-~~~L~I~~~   78 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSS----GTGT-DFVFTIENT   78 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EETT-EEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEe----CCCC-eeeecccCC
Confidence            44567778899999999999877665567899963  3211            122333321    1122 346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          79 LSEDVGDYYCLQSF   92 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCEEEeEecCc
Confidence            99999999997543

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.42  E-value=1.2e-06  Score=60.51  Aligned_cols=99  Identities=16%  Similarity=0.259  Sum_probs=56.4

Q ss_pred             CceEEecCCCEEEEeeEeee----cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-
Q psy15667        162 PKVTAIDGEGLSIKCPVAGY----PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-  236 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~----p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~-  236 (286)
                      ..+.+..|++++|.|.....    ....+.|.+..+.                         +.....+.+...+.... 
T Consensus         7 ~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~-------------------------~~~~~~~~~~~~~~~~~~   61 (119)
T d1neua_           7 REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEG-------------------------GRDAISIFHYAKGQPYID   61 (119)
T ss_dssp             SEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETT-------------------------CCCCEEEEEEETTEEEEC
T ss_pred             CeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEeccc-------------------------CCceeEEEEEeecccccc
Confidence            35677899999999987532    2236889774321                         11111222333332211 


Q ss_pred             --C--CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecc--cceeeEEEEEE
Q psy15667        237 --P--RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA--AQARYSSKLQV  285 (286)
Q Consensus       237 --~--~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~--g~~~~~~~L~V  285 (286)
                        .  ..+..+... ......|.|.+++.+|+|.|.|...+..  ......+.|.|
T Consensus        62 ~~~~~~~R~~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V  117 (119)
T d1neua_          62 EVGTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV  117 (119)
T ss_dssp             SSSTTTTCEEECCBGGGTBCCEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEE
T ss_pred             cCccceeEEEEEEECCCCEEEEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEE
Confidence              1  112222211 1224579999999999999999999864  34455566665

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.42  E-value=6e-07  Score=59.53  Aligned_cols=75  Identities=11%  Similarity=0.160  Sum_probs=50.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.|...+ ...|..|++|+|.|... .+...+.|+|+|.......+..     . .......|.|.+++..|+|.|+|..
T Consensus         5 PsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~-----~-~~~~~a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           5 PFIWAEP-HFMVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKP-----P-ERINKVKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSS-----C-TTCCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeeC-CCcccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEcc-----C-CCccEEEEEEeeeecCCCceEEEEe
Confidence            6666555 55678999999999865 3456788999986432111100     0 1111235899999999999999987


Q ss_pred             EcC
Q psy15667         83 ENR   85 (286)
Q Consensus        83 ~n~   85 (286)
                      .+.
T Consensus        77 ~~~   79 (95)
T d1olla1          77 RVG   79 (95)
T ss_dssp             EET
T ss_pred             CCC
Confidence            653

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=4.6e-07  Score=61.52  Aligned_cols=74  Identities=22%  Similarity=0.305  Sum_probs=50.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|...+.....+.|++.  |..+            ....++...    ..+ ....|+|.++
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~----~~~-~~~~L~I~~~   78 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGS----DSG-KDYTLSITSL   78 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----CSS-SSEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCcccccccee----cCC-CeEEeEEccc
Confidence            34557778899999999999887655556899973  2211            112344321    122 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d1ospl1          79 QTEDVATYFCQQY   91 (107)
T ss_dssp             CGGGCSEEEEEEC
T ss_pred             ccccCCcEEEeec
Confidence            9999999999654

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=2.4e-06  Score=57.88  Aligned_cols=97  Identities=15%  Similarity=0.134  Sum_probs=56.2

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~  240 (286)
                      ..+++.+|++++|.|...+.-...+.|.+..+.-.                           +...-+.....- ....+
T Consensus         9 ~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~---------------------------~~~i~~~~~~~~~~~~~r   61 (107)
T d1ospl1           9 SSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNA---------------------------PRLLISGATSLETWVPSR   61 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSC---------------------------CEEEEETTTEECTTSCTT
T ss_pred             CEEEECCCCCEEEEEecCCCcccccEEEEcCCCcc---------------------------ceeEEeeccccCCccccc
Confidence            34677899999999998776656799998532211                           000001111110 11122


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      +.+. .......|.|.++.++|+|.|.|.+..... .-.....|+||
T Consensus        62 fs~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  107 (107)
T d1ospl1          62 FSGS-DSGKDYTLSITSLQTEDVATYFCQQYWSPPPTFGGGTKLEIK  107 (107)
T ss_dssp             EEEE-CSSSSEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ccee-cCCCeEEeEEcccccccCCcEEEeeccCCCCeECCCEEEEEC
Confidence            2222 223356899999999999999998765321 22233467665

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.42  E-value=4.7e-07  Score=62.50  Aligned_cols=78  Identities=28%  Similarity=0.382  Sum_probs=52.0

Q ss_pred             eeEeccccccccCCCcEEEEEEeecC-CCCeeEEee--CCEE---c-C-----------CCCeeEeceEEecccceeEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTL--DGFE---L-P-----------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~--~~~~---l-~-----------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      .+...+...++.+|++|+|.|...+. ....+.|++  .|..   | .           ...|+....   ........|
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~---~~~~~~~~L   78 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKH---ILTQKAFHL   78 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEE---EGGGTEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEe---cCceeEEee
Confidence            45667888899999999999987643 556789986  2221   1 0           112333211   112223469


Q ss_pred             EEcccccCCCeEEEEEEEc
Q psy15667         66 NISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +|.+++.+|+|.|.|.+..
T Consensus        79 ~I~~~~~~Dsg~YyCa~~~   97 (116)
T d1tvda_          79 VISPVRTEDSATYYCAFTL   97 (116)
T ss_dssp             EESSCCGGGCEEEEEEEEC
T ss_pred             eecCccccccccceeeEec
Confidence            9999999999999997654

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=5.5e-07  Score=61.16  Aligned_cols=74  Identities=31%  Similarity=0.403  Sum_probs=51.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|..+++.+|++|+|.|.........+.|++.  |+.+            ....++...    ..+. ...|.|.++
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~----~~~~-~~~L~I~~~   78 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGS----GSGT-DFTLSINSV   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EETT-EEEEEESSC
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceec----ccCC-EEEEEEccc
Confidence            45667788999999999999877655567899973  2211            112344321    1122 346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d1j1pl_          79 ETEDFGMYFCQQA   91 (107)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcCCCEEEEEEcC
Confidence            9999999999654

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.42  E-value=2.2e-06  Score=58.04  Aligned_cols=97  Identities=19%  Similarity=0.209  Sum_probs=55.2

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-CCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~-~~~~  240 (286)
                      ..+.+.+|++++|.|.........+.|.+..+.-                           .+..-.+....... ...+
T Consensus         9 ~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~---------------------------~~~~l~~~~~~~~~~~~~~   61 (107)
T d1kcvl1           9 KSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQ---------------------------SPVLLIYGASNRYTGVPDR   61 (107)
T ss_dssp             SEEEEETTCCEEEEEEESSCCTTCEEEEEECTTS---------------------------CCEEEEETTTEECTTCCTT
T ss_pred             CEEeECCCCCEEEEEEecCCcCCceEEEEcccCC---------------------------CCEEEEEecccccCCccce
Confidence            3467788999999999877666679998843211                           01111111111110 1112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      .... .......|.|.++.++|+|.|.|.+..... .-..-..|+||
T Consensus        62 ~~~~-~~~~~~~L~I~~l~~~DSa~YyCa~~~~~~~~FG~GT~L~Vk  107 (107)
T d1kcvl1          62 FTGS-GSATDFTLTISSVQADDDADYYCGQSYSSPLTFGGGTKLELK  107 (107)
T ss_dssp             EEEE-EETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             EEee-ccCCeeecEEHhheecCCceEEEEecCCCceeECCCEEEEEC
Confidence            2221 123356899999999999999998654321 12233456664

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.41  E-value=3.2e-06  Score=57.13  Aligned_cols=97  Identities=24%  Similarity=0.312  Sum_probs=55.0

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC-CCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS-PRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~-~~~~  240 (286)
                      +.+.+.+|++++|.|...+.-...+.|.+..+.-.                           |..-......... ...+
T Consensus         8 ~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~---------------------------~~~l~~~~~~~~~~~~~~   60 (106)
T d1lk3l1           8 PALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQ---------------------------PKLLIYKASNLASGVPAR   60 (106)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSC---------------------------CEEEEETTTEECTTCCTT
T ss_pred             CeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCC---------------------------cEEEEEecccccCCcCCc
Confidence            34677789999999998776666789987432211                           1111111111110 1112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      +.... ......|.|.+++++|+|.|.|.+.... -.-..-..|+||
T Consensus        61 f~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  106 (106)
T d1lk3l1          61 FSGSG-SGTDFTLTIDPVEADDTAIYFCQQSWNGPLTFGAGTKLELK  106 (106)
T ss_dssp             EEEEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eeeec-CCCEEEeEECCcChhhCCCcccccccCccceECCCeEEEEC
Confidence            22222 2234689999999999999999654321 122333556665

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.40  E-value=1.1e-06  Score=60.75  Aligned_cols=76  Identities=18%  Similarity=0.365  Sum_probs=51.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc-------C----------CCCeeEeceEEecccceeEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL-------P----------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l-------~----------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      +...|...++.+|++|+|.|...+.....+.|++.  |+.+       .          ...++....    .......|
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~~L   79 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINH----ASPTLSTL   79 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEE----CSSSEEEE
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeec----cccccccc
Confidence            55567778899999999999987665678899973  2211       0          112332211    12223469


Q ss_pred             EEcccccCCCeEEEEEEEc
Q psy15667         66 NISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .|.+++.+|+|.|.|.+..
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             EECSCCGGGCEEEEEEEEC
T ss_pred             cccccccccCceEEEEEec
Confidence            9999999999999997643

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.40  E-value=1.5e-07  Score=62.96  Aligned_cols=32  Identities=22%  Similarity=0.347  Sum_probs=25.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      +..|.|.+++.+|+|.|.|.+.|.    +..+.|.|
T Consensus        66 ~~sL~I~~l~~~DsG~Y~C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          66 NFPLIIKNLKIEDSDTYICEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             BCCEEECSCCGGGCEEEEEEETTE----EEEEEEEE
T ss_pred             EEEEEECCCChHHCEEEEEEEecC----CeEEEEEC
Confidence            447999999999999999999764    34555654

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.39  E-value=1.3e-06  Score=58.26  Aligned_cols=81  Identities=16%  Similarity=0.260  Sum_probs=50.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.+.+.+ .+..|+.++|.|.+.|. | ...|+|++||+.+..+. ... ......++.......-.+..++.+.|+
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~-~~t-~~~~~~dgtf~~~s~l~v~~~~~~~yt   79 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVADGV-YET-SFFVNRDYSFHKLSYLTFIPSDDDIYD   79 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCCSSE-EEC-CCEECTTSCEEEEEEEEECCCTTCCEE
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeeccCCc-eee-eeEECCCCCEEEEEEeEEcCCCCCEEE
Confidence            7888876654 46678999999999995 3 46899999998886431 111 111111222222222334456677899


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |++.-.
T Consensus        80 C~V~H~   85 (100)
T d1muja1          80 CKVEHW   85 (100)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            998764

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.39  E-value=4.8e-06  Score=56.36  Aligned_cols=96  Identities=18%  Similarity=0.199  Sum_probs=54.6

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC-CCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP-RFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~-~~~~  241 (286)
                      .+++.+|++++|.|.........+.|.+..+.-.                           +..-.......... ....
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~---------------------------~~~l~~~~~~~~~~~~~~~   62 (108)
T d1jhll_          10 YLVASPGETITINCRASKSISKSLAWYQEKPGKT---------------------------NNLLIYSGSTLQSGIPSRF   62 (108)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSC---------------------------CEEEEETTTEECTTCCTTE
T ss_pred             eEEecCCCCEEEEEEccCCcCCceEEEEccccCC---------------------------CeEEEEeeccccCCccccc
Confidence            4667789999999998776666799988432210                           11111111111111 1111


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      .. ........|.|.++.++|+|.|.|.+.+... .-..-..|+||
T Consensus        63 ~~-~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~~~~~FG~GT~LtVk  107 (108)
T d1jhll_          63 SG-SGSGTDFTLTISSLEPEDFAMYICQQHNEYPWTFGGGTKLEIK  107 (108)
T ss_dssp             EE-EESSSEEEEEECSCCTTCCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             cc-cCCCCEEEeEeeeeEeccceEEEEeeCCCcccEECCCeEEEEc
Confidence            11 1122345799999999999999997665421 12223456665

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=1.7e-07  Score=62.89  Aligned_cols=79  Identities=11%  Similarity=0.106  Sum_probs=50.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.+...+ ...|..|++|+|.|... .+...+.|+|+|............   . .+.....+.|.+++..|+|.|+|.
T Consensus         7 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~---~-~~~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           7 MPFISAKS-SPVIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLK---F-WNETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCEEESS-CSEEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC--------CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecC-CCceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceecccccc---C-CCCceEEEEecCCCHHHCceEEEE
Confidence            36676655 45788999999999765 455678899876422110000000   0 011122488999999999999999


Q ss_pred             EEcCC
Q psy15667         82 AENRA   86 (286)
Q Consensus        82 a~n~~   86 (286)
                      ..+..
T Consensus        81 y~~~~   85 (99)
T d1ucta1          81 YRIGH   85 (99)
T ss_dssp             EEETT
T ss_pred             EECCC
Confidence            87643

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=3.3e-06  Score=57.04  Aligned_cols=98  Identities=16%  Similarity=0.221  Sum_probs=55.7

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      +.+.+.+|++++|.|.........+.|.+..+.              +...+.-            ............+.
T Consensus         9 ~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g--------------~~~~~~~------------~~~~~~~~~~~~~~   62 (107)
T d1c5cl1           9 SSLSASLGERVSLTCRTSQEISGYLSWLQQKPD--------------GTIKRLI------------YDATKLDSGAPKRF   62 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--------------SCEEEEE------------ETTTEECTTSCTTE
T ss_pred             CEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCC--------------CcceeEE------------eccccccCCCCCce
Confidence            346677899999999887766667889874322              1111110            00111111111122


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      .... ......|.|.+++++|+|.|.|.+.+.. ..-..-..|+||
T Consensus        63 ~~~~-~~~~~~L~I~~l~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  107 (107)
T d1c5cl1          63 SGSR-SGSDYSLTISSLESEDFADYYCLQYASFPRTFGGGTKLEIK  107 (107)
T ss_dssp             EEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             Eecc-cCCEEEEEEhhhcccCCeEEEEecCcCCcCeECCCEEEEEC
Confidence            2221 1234589999999999999999876542 122333567665

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.36  E-value=2e-06  Score=58.20  Aligned_cols=98  Identities=14%  Similarity=0.232  Sum_probs=56.2

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+.+|++++|.|.........+.|.+..+.                          ..+..+.+...........++
T Consensus         9 ~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g--------------------------~~~~~l~~~~~~~~~~~~~~~   62 (107)
T d1tjgl1           9 SSLSASVGDRITITCRASQGVTSALAWYRQKPG--------------------------SPPQLLIYDASSLESGVPSRF   62 (107)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--------------------------SCCEEEEETTTEECTTSCTTE
T ss_pred             CEEEECCCCCEEEEEEECCCCCccEEEEeccCC--------------------------ccceEEEeecccccCCCCcce
Confidence            456677899999999987655667889884321                          111111111111111111222


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      .... ......|.|.+++++|+|.|.|.+.+.- ..-..-..|+||
T Consensus        63 ~~~~-~~~~~~L~I~~l~~~DsA~YyCa~~~~~~~~FG~GT~LtVk  107 (107)
T d1tjgl1          63 SGSG-SGTEFTLTISTLRPEDFATYYCQQLHFYPHTFGGGTRVDVR  107 (107)
T ss_dssp             EEEE-ETTEEEEEESSCCGGGCSEEEEEECSBSSCEECCCEEEEEC
T ss_pred             EEec-cCCEEEEEeccceeCcCceEEEEECcCCcCeECCCEEEEEC
Confidence            2221 2335679999999999999999765432 123334566665

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.36  E-value=8.9e-07  Score=59.95  Aligned_cols=75  Identities=31%  Similarity=0.377  Sum_probs=51.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CE-E-c--C--------CCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GF-E-L--P--------TNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~-~-l--~--------~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|..+++.+|++|+|.|.........+.|++.  |. + +  .        ...++...    ..+ ....|+|.++
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~----~s~-~~~~L~I~~~   77 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGS----GSG-RDYSFSISNL   77 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE----EET-TEEEEEECSC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEee----cCC-CEeeeEehhh
Confidence            45567778899999999999877666666899973  21 1 1  0        12233221    112 2346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      ..+|+|.|.|.+..
T Consensus        78 ~~~DsA~YyCa~~~   91 (106)
T d1a0ql1          78 EPEDIATYYCLQYY   91 (106)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCEeEEEEEeC
Confidence            99999999997543

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.35  E-value=6.2e-07  Score=61.76  Aligned_cols=77  Identities=22%  Similarity=0.267  Sum_probs=51.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...+..+.+.+|++++|.|.........+.|+|.  |+.   |         ....++.....   .......|.|.++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~I~~~   80 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH---KSSSSFHLQKSSA   80 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB---GGGTBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeecc---CCCCeEEeecccc
Confidence            45566677899999999999988777778999873  221   1         01223332111   1112235999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsg~YyCa~~~   94 (115)
T d1lp9e1          81 QLSDSALYYCALFL   94 (115)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             ccccCccceEEEEc
Confidence            99999999997643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.35  E-value=5.6e-07  Score=61.10  Aligned_cols=74  Identities=24%  Similarity=0.341  Sum_probs=51.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|.........+.|++.  |+.+            ....++..+    ..+. ..+|.|.++
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~----~~~~-~~~L~I~~~   78 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGS----GSGT-DYSLTISNL   78 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCE----EETT-EEEEECSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEE----ccCC-EEEEEEeEe
Confidence            45678888999999999999877766667899963  2211            112233221    1122 346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          79 EPEDIATYFCQHH   91 (107)
T ss_dssp             CSCCCSEEEEEEC
T ss_pred             eecCCCcEEeeeC
Confidence            9999999999643

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.34  E-value=2.2e-06  Score=58.05  Aligned_cols=97  Identities=19%  Similarity=0.220  Sum_probs=54.8

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.....-...+.|.+..+.-.              ..+            +........-....++.
T Consensus        10 ~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~--------------~~~------------l~~~~~~~~~~~~~rfs   63 (107)
T d1mexl1          10 FMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQS--------------PKT------------LIYSASYRYSGVPDRFT   63 (107)
T ss_dssp             EEEECTTSCEEEEEEESSCCTTCEEEEEECTTSC--------------CEE------------EEETTTEECTTSCTTEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCceEEEeccCCcc--------------cEE------------EEEeccccccccCCCee
Confidence            4667789999999987665556789998432211              000            11000001001111222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      ... ......|.|.+++++|++.|.|.+..... .-.....|+||
T Consensus        64 ~~~-~~~~~~L~I~~~~~~DsA~YyCa~~~~~~~~FG~GT~LtVk  107 (107)
T d1mexl1          64 GSG-SGTDFTLTINNVQSEDLAEYFCQQYNSYPYTFGGGTKLEIK  107 (107)
T ss_dssp             EEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ecC-CCCeeeeeechhheecceeEEEeECCCCCceECCCEEEEEC
Confidence            222 12356799999999999999997664322 11333567775

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=9.4e-07  Score=59.85  Aligned_cols=75  Identities=25%  Similarity=0.309  Sum_probs=51.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|..+++.+|++|+|.|.........+.|++.  |+.+            ....++..+    ..++ ...|.|.++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~----~~~~-~~~L~I~~l   78 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGS----RSGS-DYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEE----EETT-EEEEEESSC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEec----ccCC-EEEEEEhhh
Confidence            44567788899999999999987766667899973  3221            011222221    1122 246999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          79 ESEDFADYYCLQYA   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             cccCCeEEEEecCc
Confidence            99999999996543

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.33  E-value=1e-06  Score=59.80  Aligned_cols=74  Identities=30%  Similarity=0.432  Sum_probs=51.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|.........+.|++.  ++.   |         ....++...    ... ....|.|.++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~----~~~-~~~~L~I~~l   78 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGS----GSA-TDFTLTISSV   78 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EET-TEEEEEESSC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEee----ccC-CeeecEEHhh
Confidence            44567778899999999999987766667999973  221   1         012333221    111 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~DSa~YyCa~~   91 (107)
T d1kcvl1          79 QADDDADYYCGQS   91 (107)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             eecCCceEEEEec
Confidence            9999999999654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.32  E-value=6.4e-07  Score=61.50  Aligned_cols=77  Identities=16%  Similarity=0.260  Sum_probs=51.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE--c----CC------CCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE--L----PT------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~--l----~~------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|...+.....+.|+|.  |+.  +    ..      ..++...  ... ......|.|.++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~L~i~~~   79 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNAS--LDK-SSGRSTLYIAAS   79 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEE--EET-TTTEEEEEESSC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeee--ecc-CCCEEEeeeecC
Confidence            34557778899999999999987766667889973  221  1    01      1112111  111 122346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+..
T Consensus        80 ~~~Dsg~YyCa~~~   93 (113)
T d2bnqd1          80 QPGDSATYLCAVRP   93 (113)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CCCCCcEEeEeEec
Confidence            99999999997754

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=2.1e-06  Score=58.36  Aligned_cols=74  Identities=28%  Similarity=0.405  Sum_probs=50.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CE---Ec---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GF---EL---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~---~l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|..+++.+|++++|.|.........+.|++.  ++   .|         ....++...    ..+ ....|.|.++
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~----~~~-~~~~L~I~~~   78 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGS----GSG-TQFSLKINSL   78 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EET-TEEEEEESSC
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEe----ccC-CEEEEEEccc
Confidence            45667888899999999999887655566899973  22   11         011233221    112 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~DSa~YyCA~~   91 (109)
T d1mqkl_          79 LPEDFGSYYCQHH   91 (109)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             cccCCeeEEEeee
Confidence            9999999999654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.31  E-value=1.4e-06  Score=59.05  Aligned_cols=74  Identities=28%  Similarity=0.392  Sum_probs=50.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|........-+.|++.  +..   |         ....++...    ..+. ...|.|.++
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~----~~~~-~~~L~I~~~   78 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGS----GSGQ-DYSLTISSL   78 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EETT-EEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeec----ccCC-EEEcccccc
Confidence            45667778899999999999887666667889863  221   1         011233321    1122 246999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d1d5il1          79 EYEDMGIYYCLQY   91 (107)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CCcCCEEEEeeec
Confidence            9999999999653

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.31  E-value=1.2e-06  Score=59.31  Aligned_cols=75  Identities=24%  Similarity=0.328  Sum_probs=51.1

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CE---Ec---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GF---EL---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~---~l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|...+.-...+.|++.  |+   .|         ....++...    ..+ ....|.|.++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~----~~~-~~~~L~I~~~   77 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGS----GSG-TEFTLTISGL   77 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EET-TEEEEEEESC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeee----ccC-CEEEEEEccc
Confidence            45667888999999999999887655566889974  21   11         011233321    112 2346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+..
T Consensus        78 ~~~Dsa~YyCa~~~   91 (106)
T d1op3k1          78 QFDDFATYHCQHYA   91 (106)
T ss_dssp             CGGGCSEEEEEEEC
T ss_pred             cccCCCcEeeeeCC
Confidence            99999999996543

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.31  E-value=4.4e-07  Score=61.22  Aligned_cols=71  Identities=25%  Similarity=0.375  Sum_probs=47.3

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEcccccCC
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +..+++.+|++|+|.|.........+.|++.  |..+            ....++..    ... .....|.|.+++.+|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~----~~~-~~~~~L~I~~l~~~D   79 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSS----STS-GTTVTLTISGVQAED   79 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE----EEE-TTEEEEEETTCCGGG
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEE----CCC-CCccCceEcCcchhH
Confidence            4467889999999999877655567899973  2211            01122221    111 223469999999999


Q ss_pred             CeEEEEEEEc
Q psy15667         75 GGEYACVAEN   84 (286)
Q Consensus        75 ~G~Y~C~a~n   84 (286)
                      +|.|.|.+..
T Consensus        80 sa~YyCA~~~   89 (103)
T d8faba1          80 EADYYCQAWD   89 (103)
T ss_dssp             CEEEEEEEEE
T ss_pred             CceEEeeecC
Confidence            9999997543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.30  E-value=1.1e-06  Score=60.55  Aligned_cols=75  Identities=16%  Similarity=0.215  Sum_probs=48.9

Q ss_pred             eccccccccCCCcEEEEEEeecC-CCCeeEEeeC-----CEEc------C-----------CCCeeEeceEEecccceeE
Q psy15667          7 YSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD-----GFEL------P-----------TNNRFVIGQFVSGHGDVIS   63 (286)
Q Consensus         7 ~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~-----~~~l------~-----------~~~~~~~~~~~~~~~~~~~   63 (286)
                      ..+...++.+|++|+|.|.+.+. ....+.|++.     ++.|      .           ...++....   .......
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~---~~~~~~~   79 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILE---SSDSRRP   79 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEE---STTSSSC
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEE---eCCCCeE
Confidence            45667789999999999998763 4457899963     2221      0           011222111   1112223


Q ss_pred             EEEEcccccCCCeEEEEEEEc
Q psy15667         64 HVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .|.|.+++.+|+|.|.|.+..
T Consensus        80 ~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          80 FLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             EEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeecccCCCCCcEEEEeEcC
Confidence            599999999999999997643

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=3.5e-06  Score=56.89  Aligned_cols=83  Identities=16%  Similarity=0.285  Sum_probs=50.2

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~  241 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-                           .+...+....... ....++
T Consensus        10 slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~---------------------------~~~~~~~~~~~~~~~~~~rf   62 (106)
T d1i8ka_          10 SLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGE---------------------------PPKFLISEGNTLRPGVPSRF   62 (106)
T ss_dssp             EEECCTTCCEEEEEEESSCCTTCEEEEEECTTS---------------------------CCEEEEETTTEECTTSCTTE
T ss_pred             EEEECCCCCEEEEEEeCCCCCccEEEEeCCCCC---------------------------ceEEEEeccCccccCCCcce
Confidence            456778999999998876656678998743221                           1111122111111 111222


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..... .....|.|.++.++|+|.|.|.+.+.
T Consensus        63 s~~~~-~~~~~L~I~~~~~~Dsa~YyCa~~~~   93 (106)
T d1i8ka_          63 SSSGT-GTDFVFTIENTLSEDVGDYYCLQSFN   93 (106)
T ss_dssp             EEEEE-TTEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             eEeCC-CCeeeecccCCccccCEEEeEecCcc
Confidence            22221 23567999999999999999987654

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.30  E-value=1.3e-06  Score=59.18  Aligned_cols=74  Identities=31%  Similarity=0.411  Sum_probs=50.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...+...++.+|++|+|.|....+-...+.|++.  |..   |         ....++..+    ..+ ....|.|.++
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~----~~~-~~~~L~I~~~   78 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGS----GSG-TDFTLTINNV   78 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EET-TEEEEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeec----CCC-Ceeeeeechh
Confidence            44566677899999999999877665567899973  221   1         112333321    112 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~DsA~YyCa~~   91 (107)
T d1mexl1          79 QSEDLAEYFCQQY   91 (107)
T ss_dssp             CGGGCSEEEEEEC
T ss_pred             heecceeEEEeEC
Confidence            9999999999654

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.30  E-value=4.4e-07  Score=62.87  Aligned_cols=78  Identities=19%  Similarity=0.293  Sum_probs=49.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecC----CCCeeEEeeC--CE----Ec----------CCC----CeeEeceEEecccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN----PTPDIGWTLD--GF----EL----------PTN----NRFVIGQFVSGHGD   60 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~----p~p~v~W~~~--~~----~l----------~~~----~~~~~~~~~~~~~~   60 (286)
                      +...+.++.+..|++++|.|.....    ....+.|++.  +.    .+          ...    +|+..... ...++
T Consensus         2 vv~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~   80 (119)
T d1neua_           2 VVYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGD-PSWKD   80 (119)
T ss_dssp             EEECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCB-GGGTB
T ss_pred             EEcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEE-CCCCE
Confidence            4567888899999999999986532    3347899863  11    11          000    12211000 01111


Q ss_pred             eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         61 VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        61 ~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                        .+|.|.+++.+|+|.|.|.+.+.
T Consensus        81 --~sL~I~~v~~~DsG~Y~C~v~~~  103 (119)
T d1neua_          81 --GSIVIHNLDYSDNGTFTCDVKNP  103 (119)
T ss_dssp             --CCEEECSCCGGGCEEEEEEEEC-
T ss_pred             --EEEEECCCChHHCEEEEEEEEEC
Confidence              25999999999999999998874

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3e-06  Score=56.49  Aligned_cols=81  Identities=17%  Similarity=0.209  Sum_probs=50.4

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .||.+.+.... .+..|+.++|.|.+.|. |. -.|+|.+||..+.......  .... .++.......-.+..+|.+.|
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~v~~~~~~~--~~~~-~dgty~~~s~l~v~~~~~~~y   79 (100)
T d1k5nb_           4 RTPKIQVYSRH-PAENGKSNFLNCYVSGFHPSDIEVDLLKNGERIEKVEHSD--LSFS-KDWSFYLLYYTEFTPTEKDEY   79 (100)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEECC--CEEC-TTSCEEEEEEEEECCCSSCCE
T ss_pred             CCCeeEEEcCC-cccCCCCEEEEEEECccCCCCcEEEEEECCEecCCccccc--eecC-CCCcEEEEEEeEECCCCCCEE
Confidence            37887765333 45679999999999995 43 4789999999985322211  1111 222222233334455677799


Q ss_pred             EEEEEcC
Q psy15667         79 ACVAENR   85 (286)
Q Consensus        79 ~C~a~n~   85 (286)
                      +|.+.-.
T Consensus        80 tC~V~H~   86 (100)
T d1k5nb_          80 ACRVNHV   86 (100)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9988764

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.29  E-value=4e-06  Score=55.36  Aligned_cols=75  Identities=20%  Similarity=0.380  Sum_probs=48.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCCeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G~   77 (286)
                      ||.+....    ...|+.++|.|.+.| .|.+.|.|.+||+.+........ +  ...++.   ...|.|   ...+...
T Consensus         5 ~P~V~~~~----~~s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~-~--~~~~g~y~v~S~L~v---~~~~~~~   74 (95)
T d1dr9a2           5 TPSISDFE----IPTSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVS-Q--DPETELYAVSSKLDF---NMTTNHS   74 (95)
T ss_dssp             CCEEEEEE----CSSTTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEE-E--CTTTCCEEEEEEEEE---ETTSCEE
T ss_pred             CCEEEecc----cCCCCEEEEEEEECcccCCCEEEEecCCcEecccceeeE-e--cCCCccEEEEEEEEc---cCCccce
Confidence            45555332    246888999999997 69999999999998865433221 1  112222   223444   3456679


Q ss_pred             EEEEEEcCC
Q psy15667         78 YACVAENRA   86 (286)
Q Consensus        78 Y~C~a~n~~   86 (286)
                      |+|.+....
T Consensus        75 ~tC~V~h~~   83 (95)
T d1dr9a2          75 FMCLIKYGH   83 (95)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEecC
Confidence            999988654

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.29  E-value=3.8e-06  Score=55.98  Aligned_cols=81  Identities=16%  Similarity=0.187  Sum_probs=50.4

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +||.+.+.+.. ....|+.++|.|.+.|. |. ..|+|.+||..+.......  .....++ .......-.+..++.+.|
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~~~~~~~~~--~~~~~dg-tf~~~s~l~v~~~~~~~y   78 (99)
T d1lk2b_           3 KTPQIQVYSRH-PPENGKPNILNCYVTQFHPPHIEIQMLKNGKKIPKVEMSD--MSFSKDW-SFYILAHTEFTPTETDTY   78 (99)
T ss_dssp             BCCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEECTTCEEEE--EEECTTC-CEEEEEEEEECCCSSCCE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCcEEEEeeCCeecCCcEECc--eeECCCC-CEEEEEEeEecCcCCCEE
Confidence            47887765443 34678899999999995 43 4799999999886432221  1112222 222222333455667799


Q ss_pred             EEEEEcC
Q psy15667         79 ACVAENR   85 (286)
Q Consensus        79 ~C~a~n~   85 (286)
                      +|.+.-.
T Consensus        79 tC~V~H~   85 (99)
T d1lk2b_          79 ACRVKHD   85 (99)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9988753

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.28  E-value=3.6e-06  Score=57.78  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=50.2

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.........+.|.+..+.              ....+......           +.. -....++.
T Consensus        10 ~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g--------------~~~~~l~~~~~-----------~~~-~~~~~~~~   63 (115)
T d1lp9e1          10 LVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLN--------------EAPKLLLKSFT-----------DNK-RPEHQGFH   63 (115)
T ss_dssp             EEEEETTSCEEECEEEECSSSCCEEEEEECTT--------------SCCEEEEESCS-----------STT-CCCCSSCE
T ss_pred             eEEECCCCCEEEEEEEeCCCcCCeeEEEeCCC--------------Cceeeeeeeee-----------ccC-Ccceeeee
Confidence            46677999999999988777778999874321              11112111110           000 01111222


Q ss_pred             eeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        243 VSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       243 ~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +... ......|.|.+++++|+|.|.|.+...
T Consensus        64 ~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (115)
T d1lp9e1          64 ATLHKSSSSFHLQKSSAQLSDSALYYCALFLA   95 (115)
T ss_dssp             ECCBGGGTBCCEEESSCCGGGCEEEEEEEEEC
T ss_pred             eeccCCCCeEEeeccccccccCccceEEEEcC
Confidence            2211 122446999999999999999987654

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.28  E-value=8.5e-06  Score=55.02  Aligned_cols=97  Identities=18%  Similarity=0.177  Sum_probs=54.7

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-              ...+..-.            .....-....++.
T Consensus        10 sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~--------------~~~~l~~~------------~~~~~~~~~~rf~   63 (107)
T d1d5il1          10 SMYASLGERVTITCKASQDINSYLSWFQQKPGK--------------SPKTLIYR------------ANRLVDGVPSRFS   63 (107)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTS--------------CCEEEEET------------TTEECTTSCTTEE
T ss_pred             EEEECCCCCEEEEEEcCCCCCCccceeEecccc--------------CeEEEEEe------------ccccccCcCCcee
Confidence            456778999999998876666678898743221              11111100            0000000011222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      ... ......|.|.++..+|+|.|.|.+.... -.-..-..|+||
T Consensus        64 ~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GTkLtVk  107 (107)
T d1d5il1          64 GSG-SGQDYSLTISSLEYEDMGIYYCLQYDEFPYTFGSGTKLEIK  107 (107)
T ss_dssp             EEE-ETTEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             ecc-cCCEEEccccccCCcCCEEEEeeeccCCcceECCCEEEEEC
Confidence            221 2235689999999999999999876542 122333567665

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.27  E-value=8.1e-06  Score=54.84  Aligned_cols=37  Identities=24%  Similarity=0.339  Sum_probs=27.6

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ...|.|.+++.+|+|.|.|.+....-.-..-..|+||
T Consensus        68 ~~~L~I~~~~~~Dsa~YyCa~~~~~~~FG~GT~LtVk  104 (104)
T d1yqvl1          68 SYSLTISSMETEDAATYYCQQWGRNPTFGGGTKLEIK  104 (104)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSCEECCCEEEEEC
T ss_pred             EEEEEecccCcccCCeEEEEecCCCCeECCCeEEEEC
Confidence            5679999999999999999776543333444567775

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.27  E-value=1.5e-06  Score=58.97  Aligned_cols=75  Identities=28%  Similarity=0.363  Sum_probs=51.4

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEcc
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .++..|...++.+|++|+|.|.........+.|++.  |..   |         ....++...    ..+ ....|.|.+
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~----~~~-~~~~L~I~~   77 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS----GSG-TEFTLTIST   77 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE----EET-TEEEEEESS
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe----ccC-CEEEEEecc
Confidence            355678888999999999999887555567889973  221   1         112233221    112 234699999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+|.|.|.+.
T Consensus        78 l~~~DsA~YyCa~~   91 (107)
T d1tjgl1          78 LRPEDFATYYCQQL   91 (107)
T ss_dssp             CCGGGCSEEEEEEC
T ss_pred             ceeCcCceEEEEEC
Confidence            99999999999543

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.27  E-value=8.4e-06  Score=54.95  Aligned_cols=97  Identities=13%  Similarity=0.190  Sum_probs=54.4

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|...+.-...+.|.+..+.-              ...+.            .+......-....++.
T Consensus         9 sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~--------------~p~~l------------~~~~~~~~~~~~~~f~   62 (106)
T d1op3k1           9 TLSASVGDTITITCRASQSIETWLAWYQQKPGK--------------APKLL------------IYKASTLKTGVPSRFS   62 (106)
T ss_dssp             EEEECTTCEEEEEEEESSCCTTCEEEEEECTTS--------------CCEEE------------EETTTEECTTSCTTEE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCcEEEEecCCCC--------------CCEEE------------EEccccCCCCcCCcee
Confidence            466778999999998876555678898853221              11111            0111000000111222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      ... ......|.|.+++++|+|.|.|.+.... ..-..-..|+||
T Consensus        63 ~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  106 (106)
T d1op3k1          63 GSG-SGTEFTLTISGLQFDDFATYHCQHYAGYSATFGQGTRVEIK  106 (106)
T ss_dssp             EEE-ETTEEEEEEESCCGGGCSEEEEEEECSSCEEECCCEEEEEC
T ss_pred             eec-cCCEEEEEEccccccCCCcEeeeeCCCCccEECCCEEEEEC
Confidence            222 2335579999999999999999866432 112233456665

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.9e-06  Score=57.67  Aligned_cols=37  Identities=22%  Similarity=0.361  Sum_probs=28.2

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEE
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQV  285 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V  285 (286)
                      ....|.|.+++.+|+|.|.|.+..........+.|+|
T Consensus        72 ~~~sL~I~~l~~~DsG~Y~C~v~~~~~~~~~~v~L~V  108 (116)
T d1xeda_          72 GTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEV  108 (116)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEESCGGGCCEEEEEEEE
T ss_pred             CEEEEEEhhhCcCCCEEEEEEEEcCCCCceEeEEEEE
Confidence            3557999999999999999988765544444566665

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=6.2e-07  Score=61.14  Aligned_cols=72  Identities=18%  Similarity=0.143  Sum_probs=45.0

Q ss_pred             CCCCCeEEEEEeeecCCCCC--eEEEEeCCeeCCCCCC-ceeeecC--CCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        205 LPEGARTRVICGVTHGDPPL--TIRWLKDGKPLSPRFP-VNVSDLD--SFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~--~~~W~~~g~~~~~~~~-~~~~~~~--~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      +.+|+.+.|.|.+..+.|.+  .+.|++++..+..... .......  .....|.+.....+|...|+|.|.|.++.
T Consensus        13 l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~ltC~a~~~~~~   89 (109)
T d1vcaa1          13 LEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDE   89 (109)
T ss_dssp             EETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCC
T ss_pred             ccCCCeEEEEeEeCCcCCCCceEEEEeccCceeeccccccccccCCcceeeEEEEccCChHHCCcEEEEEEEcCcCC
Confidence            56788888888887777754  6889999987632110 0000000  11345666544455566899999998754

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.27  E-value=8.3e-07  Score=60.60  Aligned_cols=76  Identities=20%  Similarity=0.237  Sum_probs=49.3

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------CCC------CeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------PTN------NRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~~~------~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...+..+++.+|++++|.|.........+.|++.  |..+      ...      .++...  ... ......|.|.++
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~--~~~-~~~~~~L~I~~~   78 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIF--FNK-REKKLSLHIADS   78 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EET-GGGEEEEEESSC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEE--ECC-CCCeeEeEeccC
Confidence            45567778899999999999877654456889973  2211      000      111111  011 122346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (110)
T d1u3ha1          79 QPGDSATYFCAAS   91 (110)
T ss_dssp             CTTSCSEEEECCE
T ss_pred             CCCCceeEeeeec
Confidence            9999999999653

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.4e-06  Score=57.72  Aligned_cols=73  Identities=21%  Similarity=0.296  Sum_probs=50.4

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.+...+ +..|..|++|+|.|.......-.+.|+|+|...... + .     . .+. ...+.|.+++.+|+|.|+|.
T Consensus         5 kP~Lsa~P-~~~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~-~-~-----~-~~~-~a~F~l~~v~~~~~G~Y~C~   74 (96)
T d1ucta2           5 KPFLSADR-GLVLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ-H-Q-----S-GEH-PANFSLGPVDLNVSGIYRCY   74 (96)
T ss_dssp             CCEEEESS-CSEECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS-E-E-----E-CSS-SEEEECCSCCGGGCEEEEEE
T ss_pred             CCEEEEeC-CCccCCCCeEEEEEeCCCCCceEEEEEECCcccceE-E-c-----C-CCc-ccEEEEeccccccCcEEEEE
Confidence            36666554 568999999999998643344468899998543221 1 1     1 111 23588999999999999998


Q ss_pred             EEc
Q psy15667         82 AEN   84 (286)
Q Consensus        82 a~n   84 (286)
                      ...
T Consensus        75 y~~   77 (96)
T d1ucta2          75 GWY   77 (96)
T ss_dssp             EEC
T ss_pred             EEc
Confidence            764

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.27  E-value=9.9e-07  Score=60.73  Aligned_cols=77  Identities=21%  Similarity=0.311  Sum_probs=50.6

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---CC-------CCeeEeceEEecccceeEEEEEcc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---PT-------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---~~-------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +...+..+++.+|++|+|.|.........+.|++.  |+.   |   ..       ..++....  .. ......|+|.+
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~--~~-~~~~~~L~I~~   79 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEF--KK-SETSFHLTKPS   79 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEEC--BG-GGTBCCEEESS
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEE--CC-CCCEEEEeecc
Confidence            44566778899999999999887665667999973  221   1   00       11221110  11 11123599999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|+|.|.|.+..
T Consensus        80 ~~~~Dsa~YyCa~~~   94 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSE   94 (115)
T ss_dssp             CCGGGCEEEEEEEES
T ss_pred             ccccCCccceeeecC
Confidence            999999999998754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.26  E-value=2.1e-06  Score=58.41  Aligned_cols=74  Identities=27%  Similarity=0.348  Sum_probs=50.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++++|.|...+.-...+.|++.  ++.   |         ....++...    ..+ ....|.|.++
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~----~~~-~~~~L~I~~l   80 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGS----GSG-TDYTFTISSL   80 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EET-TEEEEEESSC
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEee----CCC-CEeEEEEeec
Confidence            44567788899999999999887655566889973  211   1         112233221    112 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        81 ~~~Dsa~YyCA~~   93 (109)
T d1bwwa_          81 QPEDIATYYCQQY   93 (109)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             eeCcCceEEEeec
Confidence            9999999999654

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.26  E-value=1.1e-06  Score=59.95  Aligned_cols=78  Identities=18%  Similarity=0.260  Sum_probs=48.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC--eeEEeeCCEEcCCCCeeEeceEEeccc--ceeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP--DIGWTLDGFELPTNNRFVIGQFVSGHG--DVISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~--~~~~~l~I~~~~~~D~G   76 (286)
                      +|.|....   .+.+|+.++|+|.+.+ +|.+  .+.|++++..+.........   ...+  .....|.+. ++.+|.|
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~~~~~~~~~~~~~---~~~~~~~~~s~l~~~-~~~~D~g   76 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGDHLMKSQEFLEDA---DRKSLETKSLEVTFT-PVIEDIG   76 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETTEEEEEEECCSCC---SSCCCEEEEEEEEEC-CCGGGTT
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccCceeecccccccc---ccCCcceeeEEEEcc-CChHHCC
Confidence            46676432   5889999999998885 6755  68899999877421111000   0111  112335554 4555555


Q ss_pred             -EEEEEEEcCC
Q psy15667         77 -EYACVAENRA   86 (286)
Q Consensus        77 -~Y~C~a~n~~   86 (286)
                       .|+|+|++..
T Consensus        77 ~~ltC~a~~~~   87 (109)
T d1vcaa1          77 KVLVCRAKLHI   87 (109)
T ss_dssp             CEEEEEEEECS
T ss_pred             cEEEEEEEcCc
Confidence             8999999854

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.25  E-value=2.7e-06  Score=59.06  Aligned_cols=30  Identities=23%  Similarity=0.358  Sum_probs=24.9

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKV  191 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~  191 (286)
                      ..+.+.+|++++|.|.+.+...+.+.|.+.
T Consensus         9 ~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq   38 (122)
T d1nezg_           9 KKMDAELGQKVDLVCEVLGSVSQGCSWLFQ   38 (122)
T ss_dssp             SCEEECTTCCEEEEEEEESCCSSCEEEEEE
T ss_pred             CEEEECCCCCEEEEEEEcCccCCCEEEEEE
Confidence            356778999999999998877778999874

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.25  E-value=1.7e-06  Score=59.07  Aligned_cols=76  Identities=16%  Similarity=0.175  Sum_probs=50.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc-------CC-----CCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL-------PT-----NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l-------~~-----~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...++.+++.+|++++|.|.........+.|++.  |+.+       ..     ..++...  .. .......|.|.++
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~-~~~~~~~L~I~~~   79 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVF--LN-KSAKHLSLHIVPS   79 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEE--EE-TTTTEEEEEESSC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEE--EE-ccCCEEEEEECCC
Confidence            45567778899999999999877666667889973  3211       00     1122111  11 1123456999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      ..+|+|.|.|.+.
T Consensus        80 ~~~Dsa~YyCa~~   92 (111)
T d1bd2d1          80 QPGDSAVYFCAAM   92 (111)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccccEEEEeecc
Confidence            9999999999664

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=1.3e-06  Score=57.77  Aligned_cols=69  Identities=12%  Similarity=0.208  Sum_probs=43.9

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      +..|+.+.|.|...  .....+.|+|+|.........  .........+.|.+|..+|+|.|.|...+..+..
T Consensus        15 V~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~--~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~~~~S   83 (95)
T d1olla1          15 VPKEKQVTICCQGN--YGAVEYQLHFEGSLFAVDRPK--PPERINKVKFYIPDMNSRMAGQYSCIYRVGELWS   83 (95)
T ss_dssp             EETTCCEEEEEECC--TTCCEEEEEETTEEEEEECCS--SCTTCCEEEEEESSCCGGGCEEEEEEEEETTEEC
T ss_pred             ccCCCcEEEEEecC--CCccEEEEEECCCCcceeEEc--cCCCccEEEEEEeeeecCCCceEEEEeCCCCCcc
Confidence            44666666777542  345678889988643111000  0011223578999999999999999998876543

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.24  E-value=2.9e-06  Score=58.10  Aligned_cols=87  Identities=20%  Similarity=0.302  Sum_probs=51.2

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+.+|+.++|.|...+.....+.|.+..+.              ....+.-            +...+.......+.
T Consensus         8 ~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g--------------~~~~~l~------------~~~~~~~~~~~~~~   61 (113)
T d2bnqd1           8 AALSVPEGENLVLNCSFTDSAIYNLQWFRQDPG--------------KGLTSLL------------LIQSSQREQTSGRL   61 (113)
T ss_dssp             SEEEEETTCCEEEEEEESCCCEEEEEEEEECTT--------------SCEEEEE------------EEETTCCEEEETTE
T ss_pred             CEEEEcCCCCEEEEEEEecCcccCCeEEEeccc--------------cccceee------------eeccceecccccce
Confidence            346778999999999987766667889884322              1111111            11111000001112


Q ss_pred             eeee-cCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        242 NVSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       242 ~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .... .......|.|.++..+|+|.|.|.+....
T Consensus        62 ~~~~~~~~~~~~L~i~~~~~~Dsg~YyCa~~~~~   95 (113)
T d2bnqd1          62 NASLDKSSGRSTLYIAASQPGDSATYLCAVRPTS   95 (113)
T ss_dssp             EEEEETTTTEEEEEESSCCGGGCEEEEEEEEESS
T ss_pred             eeeeccCCCEEEeeeecCCCCCCcEEeEeEecCC
Confidence            2211 12335689999999999999999887544

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.24  E-value=5.1e-06  Score=56.22  Aligned_cols=74  Identities=30%  Similarity=0.418  Sum_probs=49.5

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-C--------CCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-P--------TNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|...++.+|++|+|.|.........+.|++.  ++.   | .        ...++..    ...+ ....|+|.++
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~----~~~~-~~~~L~i~~l   78 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSG----SGSG-TDFTLTISSL   78 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE----EESS-SEEEEEECSC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccc----cCCC-CEEEeEeeee
Confidence            45567778899999999999887655566889873  221   1 0        1111211    1122 2346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCA~~   91 (108)
T d1jhll_          79 EPEDFAMYICQQH   91 (108)
T ss_dssp             CTTCCSEEEEEEC
T ss_pred             EeccceEEEEeeC
Confidence            9999999999644

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.23  E-value=1.1e-05  Score=54.58  Aligned_cols=96  Identities=18%  Similarity=0.185  Sum_probs=53.2

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~  241 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-.+              .+.-             ......- ....++
T Consensus        10 ~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p--------------~~li-------------~~~~~~~~~~~~~f   62 (109)
T d1mqkl_          10 SLSASVGETVTITCRASENIYSYLAWYQQKQGKSP--------------QFLV-------------YNAKTLGEGVPSRF   62 (109)
T ss_dssp             EEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCC--------------EEEE-------------ETTTEECTTCCTTE
T ss_pred             EEEECCCCCEEEEEEeCCCcCcccceeeccccCCC--------------eEEE-------------EeeccccCCcCCCE
Confidence            45667899999999987655566889984322110              0000             0000000 001122


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc--ceeeEEEEEEC
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA--QARYSSKLQVK  286 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g--~~~~~~~L~V~  286 (286)
                      ... .......|.|.++.++|+|.|.|.+.....  .-..-..|+||
T Consensus        63 s~~-~~~~~~~L~I~~~~~~DSa~YyCA~~~~~~~~~FG~GT~LtVk  108 (109)
T d1mqkl_          63 SGS-GSGTQFSLKINSLLPEDFGSYYCQHHYGTPPLTFGGGTKLEIK  108 (109)
T ss_dssp             EEE-EETTEEEEEESSCCGGGCEEEEEEECSSSSSCCBCCCEEEEEC
T ss_pred             EEe-ccCCEEEEEEccccccCCeeEEEeeeCCCCCcEECCCEEEEEc
Confidence            211 123356799999999999999998763211  11233467665

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=2.5e-06  Score=57.67  Aligned_cols=71  Identities=27%  Similarity=0.412  Sum_probs=48.1

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeC--CE---Ec---------CCCCeeEeceEEecccceeEEEEEcccccC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GF---EL---------PTNNRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~---~l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      +++...+.+|++++|.|...+.....+.|++.  ++   .|         ....++...    ..+ ....|.|.+++.+
T Consensus         6 Qp~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~----~~~-~~~~L~I~~~~~~   80 (106)
T d1lk3l1           6 QPPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGS----GSG-TDFTLTIDPVEAD   80 (106)
T ss_dssp             CCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EET-TEEEEEESSCCGG
T ss_pred             eCCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeee----cCC-CEEEeEECCcChh
Confidence            45567899999999999987655667899963  21   11         012233221    112 2346999999999


Q ss_pred             CCeEEEEEEE
Q psy15667         74 DGGEYACVAE   83 (286)
Q Consensus        74 D~G~Y~C~a~   83 (286)
                      |+|.|.|.+.
T Consensus        81 Dsa~YyCa~~   90 (106)
T d1lk3l1          81 DTAIYFCQQS   90 (106)
T ss_dssp             GCEEEEEEEC
T ss_pred             hCCCcccccc
Confidence            9999999543

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.23  E-value=9.1e-06  Score=55.27  Aligned_cols=25  Identities=28%  Similarity=0.393  Sum_probs=21.7

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ....|.|.+++.+|+|.|.|.+.+.
T Consensus        73 ~~~~L~I~~~~~~Dsa~YyCa~~~~   97 (111)
T d1j05a_          73 TDFTLIIDPVEADDVATYYCQQTNE   97 (111)
T ss_dssp             SEEEEEESSCCGGGCEEEEEEECSS
T ss_pred             CEEEEEEcccccccCccEEEeecCC
Confidence            4568999999999999999987654

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=5e-06  Score=55.89  Aligned_cols=88  Identities=22%  Similarity=0.307  Sum_probs=55.3

Q ss_pred             CCCeeEeccc--cccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCC
Q psy15667          1 TPPILTYSFI--EQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVED   74 (286)
Q Consensus         1 ~~p~~~~~~~--~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D   74 (286)
                      +||.+.+-..  +.....+.+++|.|.+.| .|.. .|+|.+||..+........  ....++.  ..+.|.|..-....
T Consensus         3 ~pP~V~v~~~s~~~~~~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~--~~~~~~~y~~~S~L~v~~~~w~~   80 (104)
T d1o0va1           3 TPPTVKILQSSCDGGGHFPPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTAS--TTQEGELASTQSELTLSQKHWLS   80 (104)
T ss_dssp             CCCEEEEEEECCCTTSCCCSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEE--EEEETTEEEEEEEEEEEHHHHHT
T ss_pred             CCCEEEEECCCcccccCCCCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeee--EeCCCCeEEEEEEEEECHHHcCC
Confidence            5788765433  334456778999999998 4555 7899999999864322211  1111221  22346666655555


Q ss_pred             CeEEEEEEEcCCEEEE
Q psy15667         75 GGEYACVAENRAGTCE   90 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~~   90 (286)
                      ...|+|.+.......+
T Consensus        81 ~~~ytC~V~H~~~t~~   96 (104)
T d1o0va1          81 DRTYTCQVTYQGHTFE   96 (104)
T ss_dssp             TCCEEEEEEETTEEEE
T ss_pred             CCEEEEEEEECCEeEE
Confidence            6689999998765543

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=7.1e-07  Score=62.10  Aligned_cols=76  Identities=20%  Similarity=0.338  Sum_probs=46.8

Q ss_pred             ccccCCCcEEEEEEeecCCC----CeeEEeeCCEEc----------------C-CC----CeeEeceEEecccceeEEEE
Q psy15667         12 QTLQPGPAVSLKCIASGNPT----PDIGWTLDGFEL----------------P-TN----NRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~----p~v~W~~~~~~l----------------~-~~----~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +.+.+|++++|.|...+.+.    ..+.|++.....                . ..    .|..........+  ..+|+
T Consensus        14 v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~--~~sL~   91 (124)
T d1eaja_          14 IEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG--DASIN   91 (124)
T ss_dssp             EEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT--BCCEE
T ss_pred             EEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC--EEEEE
Confidence            46789999999998775433    258898632110                0 00    1111100000011  13589


Q ss_pred             EcccccCCCeEEEEEEEcCCEEE
Q psy15667         67 ISHVTVEDGGEYACVAENRAGTC   89 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~~g~~   89 (286)
                      |.+++.+|+|.|.|.+.+..+..
T Consensus        92 I~~v~~~D~G~Y~C~v~~~~~~~  114 (124)
T d1eaja_          92 VTNLQLSDIGTYQCKVKKAPGVA  114 (124)
T ss_dssp             ECSCCGGGCEEEEEEEEETTEEE
T ss_pred             EcccEEccCEEEEEEEEECCCeE
Confidence            99999999999999998876643

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.21  E-value=1.6e-06  Score=59.58  Aligned_cols=77  Identities=19%  Similarity=0.264  Sum_probs=49.1

Q ss_pred             eEeccccccccCCCcEEEEEEeec-CCCCeeEEeeC--CEE---c---CC-C------CeeEeceEEecccceeEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLD--GFE---L---PT-N------NRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~--~~~---l---~~-~------~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +...+.++.+.+|++|+|.|.... .....+.|++.  +..   |   .. +      .++..  ..... +....|.|.
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~~~~-~~~~~L~I~   79 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSW--NFQKS-TSSFNFTIT   79 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEE--EEETT-TTEEEEEES
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEE--EEcCC-CCEEEEeec
Confidence            455677788999999999997654 33456789972  221   1   00 0      01111  01111 223469999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      +++.+|+|.|.|.+..
T Consensus        80 ~~~~~Dsg~YyCa~~~   95 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSG   95 (114)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccccccCCCceEeCCC
Confidence            9999999999997654

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.21  E-value=8.7e-06  Score=54.58  Aligned_cols=83  Identities=20%  Similarity=0.315  Sum_probs=48.5

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~~  241 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-              ...+.-             +.....- ....+.
T Consensus         7 sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~--------------~~~~~~-------------~~~~~~~~~~~~~~   59 (103)
T d8faba1           7 SVSVSPGQTARITCSANALPNQYAYWYQQKPGR--------------APVMVI-------------YKDTQRPSGIPQRF   59 (103)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTS--------------CCEEEE-------------BTTTBCCTTSCTTE
T ss_pred             eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCC--------------ceEEEe-------------eeecccccccCCcE
Confidence            466778999999998876555678898843221              111100             0000000 001112


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ... .......|.|.+++++|+|.|.|.+.+.
T Consensus        60 ~~~-~~~~~~~L~I~~l~~~Dsa~YyCA~~~~   90 (103)
T d8faba1          60 SSS-TSGTTVTLTISGVQAEDEADYYCQAWDN   90 (103)
T ss_dssp             EEE-EETTEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             EEC-CCCCccCceEcCcchhHCceEEeeecCC
Confidence            211 1223568999999999999999977653

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.20  E-value=1.7e-06  Score=58.93  Aligned_cols=72  Identities=18%  Similarity=0.247  Sum_probs=45.9

Q ss_pred             cccccccCCCcEEEEEEeecC-CCCeeEEeeC--CEE---c-C--C----CCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD--GFE---L-P--T----NNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~--~~~---l-~--~----~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      ++++.+.+|++|+|.|...+. ....+.|++.  |+.   | .  .    ..+...  .... ......|.|.+++.+|+
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~~~~~~~~~~~~--~~~~-~~~~~~L~I~~~~~~Ds   81 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGLKNNETNEMASL--IITE-DRKSSTLILPHATLRDT   81 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEESSSCEECSSCEE--EECT-TCSEEEEEESSCCGGGC
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeeeceeccccccee--eecc-cCCeeeehhcccccCCc
Confidence            567889999999999986543 3446889973  221   1 0  0    011110  0111 12235699999999999


Q ss_pred             eEEEEEEE
Q psy15667         76 GEYACVAE   83 (286)
Q Consensus        76 G~Y~C~a~   83 (286)
                      |.|.|.+.
T Consensus        82 a~YyCa~~   89 (110)
T d2esvd1          82 AVYYCIVV   89 (110)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999764

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.20  E-value=1.9e-06  Score=58.76  Aligned_cols=77  Identities=14%  Similarity=0.250  Sum_probs=50.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c----CC--------CCeeEeceEEecccceeEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L----PT--------NNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l----~~--------~~~~~~~~~~~~~~~~~~~l   65 (286)
                      +.+...|...++.+|++++|.|...+ ....+.|+|.  |+.   |    ..        ..++....    .......|
T Consensus         2 ~~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L   76 (110)
T d2aq2a1           2 AAVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASR----PSQEQFSL   76 (110)
T ss_dssp             CSEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEE----EETTEEEE
T ss_pred             CCEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEe----ccCCEEEE
Confidence            35677788889999999999998654 3457899973  221   1    00        11111110    11223468


Q ss_pred             EEcccccCCCeEEEEEEEc
Q psy15667         66 NISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~n   84 (286)
                      .|.+++.+|+|.|.|.+..
T Consensus        77 ~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          77 ILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EECCCCHhhCEEEEEeeCC
Confidence            9999999999999997543

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.20  E-value=4.7e-06  Score=54.84  Aligned_cols=79  Identities=15%  Similarity=0.270  Sum_probs=46.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.+...    ..++.++|.|.+.|. |. ..|+|.+||+.+..... .........++.......-.+...|...|+
T Consensus         4 pP~V~v~~~----~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~-~~~~~~~~~~~t~~~~s~l~v~~~~~~~yt   78 (94)
T d1de4a1           4 PPLVKVTHH----VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEF-EPKDVLPNGDGTYQGWITLAVPPGEEQRYT   78 (94)
T ss_dssp             CCEEEEEEE----ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGS-CCCEEEECTTSCEEEEEEEEECTTCGGGEE
T ss_pred             CCEEEEEEc----CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcc-cccceEeCCCceEEEEEEEEECCCCCCEEE
Confidence            777775332    356789999999994 54 48999999999853221 111111112222222222334455667899


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |++...
T Consensus        79 C~V~H~   84 (94)
T d1de4a1          79 CQVEHP   84 (94)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            998864

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.19  E-value=9.1e-06  Score=55.20  Aligned_cols=85  Identities=16%  Similarity=0.263  Sum_probs=48.0

Q ss_pred             CceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      +.+.+.+|++++|.|...+. ....+.|.+..+.              +...+..-..           ..+.. ....+
T Consensus         6 ~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g--------------~~~~~i~~~~-----------~~~~~-~~~~~   59 (110)
T d2esvd1           6 PSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHS--------------QGPQYIIHGL-----------KNNET-NEMAS   59 (110)
T ss_dssp             SEEEEETTSCEEEEEECTTCCTTEEEEEEEECTT--------------SCCEEEEEES-----------SSCEE-CSSCE
T ss_pred             CEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCC--------------CccEEeeeee-----------ceecc-cccce
Confidence            45777899999999987643 3345889874321              1111111000           01110 01111


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..+. .......|.|.++..+|+|.|.|.+...
T Consensus        60 ~~~~-~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          60 LIIT-EDRKSSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             EEEC-TTCSEEEEEESSCCGGGCEEEEEEEEES
T ss_pred             eeec-ccCCeeeehhcccccCCceEEEEEEeCC
Confidence            1111 1233567999999999999999987643

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.19  E-value=9.1e-06  Score=55.01  Aligned_cols=96  Identities=14%  Similarity=0.165  Sum_probs=53.1

Q ss_pred             ceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFP  240 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~  240 (286)
                      .+.+.+|++++|.|..... ....+.|.+..+.-.                           +..-++.....- ....+
T Consensus        10 ~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~---------------------------~~~l~~~~~~~~~~~~~~   62 (108)
T d2fx7l1          10 TQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQA---------------------------PRLLIYGASSRPSGVADR   62 (108)
T ss_dssp             EEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSC---------------------------CEEEEBTTTBCCTTSCTT
T ss_pred             eEEECCCCCEEEEEEeecCCCCccceeEeccccCC---------------------------CEEEEeeecccccCCccc
Confidence            4567789999999987654 344688988532211                           111111111100 01112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      +.... ......|.|.++.++|+|.|.|.+.+.. ..-.....|+||
T Consensus        63 ~s~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~~~~~~FG~GT~LtVk  108 (108)
T d2fx7l1          63 FSGSG-SGTDFTLTISRLEPEDFAVYYCQQYGQSLSTFGQGTKVEVK  108 (108)
T ss_dssp             EEEEE-ETTEEEEEESSCCGGGCSEEEEEECSSSSCEECCCEEEEEC
T ss_pred             eeeec-CCCEEEEEehHheecccEEEeeecCCCCCCEECCCEEEEEC
Confidence            22211 1234579999999999999999875432 122333466665

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.18  E-value=1.5e-06  Score=58.67  Aligned_cols=26  Identities=19%  Similarity=0.383  Sum_probs=22.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +.+|.|.+++.+|+|.|.|...+..+
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~V~~~~~   89 (105)
T d1dr9a1          64 NLSIVILALRPSDEGTYECVVLKYEK   89 (105)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEECCT
T ss_pred             cEEEEECcCChHHCeEEEEEEEeCCC
Confidence            45799999999999999999887543

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.18  E-value=1.1e-05  Score=55.09  Aligned_cols=38  Identities=29%  Similarity=0.301  Sum_probs=26.9

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEecccceeeEEEEEEC
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKLQVK  286 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L~V~  286 (286)
                      ....|.|.+++++|+|.|.|.+.+..-.-..-..|+||
T Consensus        75 ~~~~L~I~~l~~~Dsa~YyCA~~~~~~~FG~GT~LtV~  112 (113)
T d1q9ra1          75 TDFTLTITSVQAEDLAVYYCKQSYNLRTFGGGTKLEIK  112 (113)
T ss_dssp             TEEEEEESSCCGGGCEEEEEEECSSSCEECCCEEEEEE
T ss_pred             CeEeEEecccccCCCeEEEecccCCCCEECCCEEEEEe
Confidence            35579999999999999999876543222333556664

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.18  E-value=9.6e-06  Score=55.36  Aligned_cols=24  Identities=33%  Similarity=0.486  Sum_probs=20.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEec
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ...|+|.+++.+|+|.|.|.+...
T Consensus        65 ~~~L~I~~l~~~Dsa~YyCa~~~~   88 (113)
T d1vesa_          65 SFSLRISDLRVEDSGTYKCQAFYS   88 (113)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             ceeeeecccccCCcceEeeeeecc
Confidence            347999999999999999998654

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.18  E-value=1.4e-06  Score=59.16  Aligned_cols=74  Identities=34%  Similarity=0.434  Sum_probs=48.9

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-CCCeeEEeeC--CE---Ec---------CCCCeeEeceEEecccceeEEEEEcc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-PTPDIGWTLD--GF---EL---------PTNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p~p~v~W~~~--~~---~l---------~~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +...|...++.+|++++|.|..... ....+.|++.  |.   .|         ....++..    ...+ ....|.|.+
T Consensus         4 ltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~----~~~~-~~~~L~I~~   78 (108)
T d2fx7l1           4 LTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSG----SGSG-TDFTLTISR   78 (108)
T ss_dssp             EECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE----EEET-TEEEEEESS
T ss_pred             EEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceee----ecCC-CEEEEEehH
Confidence            4556777889999999999987643 3345889974  22   11         01122321    1112 234699999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+|.|.|.+.
T Consensus        79 ~~~~Dsa~YyCa~~   92 (108)
T d2fx7l1          79 LEPEDFAVYYCQQY   92 (108)
T ss_dssp             CCGGGCSEEEEEEC
T ss_pred             heecccEEEeeecC
Confidence            99999999999653

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.17  E-value=3e-06  Score=55.94  Aligned_cols=65  Identities=20%  Similarity=0.356  Sum_probs=42.8

Q ss_pred             CCcEEEEEEeecCCCCeeEEeeC--CEE---c---C-----CCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEE
Q psy15667         17 GPAVSLKCIASGNPTPDIGWTLD--GFE---L---P-----TNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        17 G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---~-----~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |++|+|.|.........+.|++.  |..   |   .     .+.|+....  . ......+|.|.+++.+|+|.|.|.+.
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~--~-~~~~~~sL~I~~~~~~Dsg~YyCa~~   77 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQL--N-KASQYVSLLIRDSQPSDSATYLCAVT   77 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEE--E-TTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEe--c-CCCCEEeEEeeccccCcCccceeeEe
Confidence            89999999887777778999973  211   1   1     112232211  1 12223469999999999999999765


Q ss_pred             c
Q psy15667         84 N   84 (286)
Q Consensus        84 n   84 (286)
                      .
T Consensus        78 ~   78 (94)
T d2gj6d1          78 T   78 (94)
T ss_dssp             S
T ss_pred             c
Confidence            3

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.17  E-value=2.1e-05  Score=53.51  Aligned_cols=97  Identities=22%  Similarity=0.203  Sum_probs=53.4

Q ss_pred             CceEEecCCCEEEEeeEeeec-----CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS  236 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p-----~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~  236 (286)
                      +.+.+.+|++++|.|...+.-     ...+.|.+..+.-                           .+.+..+.......
T Consensus         9 ~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~---------------------------~~~~liy~~~~~~~   61 (112)
T d1mjul1           9 PSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQ---------------------------SPQLLIYRMSNLAS   61 (112)
T ss_dssp             SEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTS---------------------------CCEEEEETTTEECT
T ss_pred             CEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCC---------------------------cEEEEEEeCCcccC
Confidence            356677899999999876532     3458898743221                           11211222221111


Q ss_pred             C-CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc-cceeeEEEEEEC
Q psy15667        237 P-RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA-AQARYSSKLQVK  286 (286)
Q Consensus       237 ~-~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~-g~~~~~~~L~V~  286 (286)
                      . ..+.... .......|.|.+++++|++.|.|...+.. ..-..-..|.||
T Consensus        62 ~~~~r~~~~-~s~~~~~L~Is~~~~~DsAvYyCa~~~~~~~~FG~GTkL~vK  112 (112)
T d1mjul1          62 GVPDRFSGS-GSGTAFTLRISRVEAEDVGVYYCLQHLEYPFTFGAGTKLELK  112 (112)
T ss_dssp             TSCTTEEEE-ECSSEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC
T ss_pred             CCCCcEEee-cCCCEEEEEECCccccCCceEEEEeCCCCCcEECCCEEEEEC
Confidence            1 1122222 12235679999999999999999543322 122233456665

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.17  E-value=9.7e-06  Score=55.34  Aligned_cols=86  Identities=17%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      +.+.+.+|++++|.|...+. ...+.|.+..+.              ....+.--            ...+.........
T Consensus         9 ~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g--------------~~~~~l~~------------~~~~~~~~~~~~~   61 (113)
T d1h5ba_           9 SALSLHEGTDSALRCNFTTT-MRSVQWFRQNSR--------------GSLISLFY------------LASGTKENGRLKS   61 (113)
T ss_dssp             SEEEEETTCCEEEEEEESSC-CSEEEEEEECTT--------------SCEEEEEE------------ESSSEEEETTEEE
T ss_pred             CEEEEcCCCCEEEEEEEecC-CccceEEEeecc--------------cceEEEEE------------eeeeeccccccce
Confidence            35677899999999987653 456889884321              11111110            0011100000001


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .+.........|.|.++.++|+|.|.|.+....
T Consensus        62 ~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (113)
T d1h5ba_          62 AFDSERARYSTLHIRDAQLEDSGTYFCAAEASS   94 (113)
T ss_dssp             ECCSSSSSEEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EEeecCCceeEEEECCCCHhHCEEEEEEecCCC
Confidence            111112234579999999999999999877544

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.16  E-value=1.2e-05  Score=53.13  Aligned_cols=82  Identities=20%  Similarity=0.291  Sum_probs=50.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC--CCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN--PTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +||.+.+.... ....++.++|.|.+.|.  +...|+|.+||+.+..+.... ......++. ......-.+..++...|
T Consensus         2 ~PP~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~-~~~~~~dgt-y~~~s~L~v~~~~~~~y   78 (98)
T d1hdmb1           2 RPPSVQVAKTT-PFNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHK-TAQPNGDWT-YQTLSHLALTPSYGDTY   78 (98)
T ss_dssp             BCCEEEEEECC-CCSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBC-CCEECSSSC-EEEEEEEEECCCTTCCE
T ss_pred             CCCEEEEEcCC-CccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeC-ceEECCCCC-EEEEEEeEcCCCCCCEE
Confidence            48888875433 35678899999999995  356899999999886432211 011111222 11111223345566689


Q ss_pred             EEEEEcC
Q psy15667         79 ACVAENR   85 (286)
Q Consensus        79 ~C~a~n~   85 (286)
                      +|.++..
T Consensus        79 tC~V~H~   85 (98)
T d1hdmb1          79 TCVVEHI   85 (98)
T ss_dssp             EEEEECT
T ss_pred             EEEEEeC
Confidence            9998875

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.14  E-value=1.7e-05  Score=53.93  Aligned_cols=37  Identities=27%  Similarity=0.321  Sum_probs=26.2

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccc-eeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQ-ARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~-~~~~~~L~V~  286 (286)
                      ...|.|.++.++|+|.|.|...+...- -..-..|+||
T Consensus        75 ~~~L~I~~~~~eDsAvYYC~~~~~~~~~FG~GTkLtVk  112 (112)
T d1ncwl1          75 DFTLKISRVEAEDLGVYYCWQGTHFPYTFGGGTKLEIK  112 (112)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             EEEEEECccccCcCEeEEEEcCCCcccEECCCeEEEEC
Confidence            457999999999999999966544321 2333466664

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.13  E-value=4.7e-06  Score=56.81  Aligned_cols=73  Identities=27%  Similarity=0.482  Sum_probs=47.8

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-------------CCCCeeEeceEEecccceeEEEEE
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-------------PTNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-------------~~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ...|...++.+|++++|.|...+. ...+.|++.  |+.   |             ..+.++...    ..++....|+|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~----~~~~~~~~L~i   77 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPISG-HDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAE----RTGGTYSTLKV   77 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCTT-CSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEE----CTTSSSEEEEE
T ss_pred             EECCCEEEECCCCCEEEEEEECCC-CceEEEEEEccCCcceecceecccCcccccCCCCccEEEE----cCCCCEEEEEE
Confidence            345677889999999999985543 357889963  221   1             012223221    11222346999


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .++..+|+|.|.|.+.
T Consensus        78 ~~~~~~Dsa~YyCa~~   93 (111)
T d2esve1          78 QPAELEDSGVYFCASS   93 (111)
T ss_dssp             SSCCGGGCEEEEEEEE
T ss_pred             CCcccCCCceEEEeee
Confidence            9999999999999754

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.13  E-value=4.5e-06  Score=57.26  Aligned_cols=24  Identities=29%  Similarity=0.386  Sum_probs=20.5

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ....|.|.+++.+|+|.|.|.+..
T Consensus        77 ~~~~L~I~~~~~~Dsg~Y~Ca~~~  100 (115)
T d2atpb1          77 RRPFLSIMNVKPEDSDFYFCATVG  100 (115)
T ss_dssp             SSCEEEECSCCGGGCEEEEEEEEC
T ss_pred             CeEEEeecccCCCCCcEEEEeEcC
Confidence            345799999999999999997753

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.13  E-value=1.4e-05  Score=52.92  Aligned_cols=81  Identities=19%  Similarity=0.216  Sum_probs=45.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +|.+.+.+.. ....|+..+|.|.+.|. |. -.|+|.+||..+..+...  .......++....+..-.+...+...|+
T Consensus         4 ~P~V~l~~~~-~~~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~--~~~~~~~dgtf~~~s~l~~~~~~~~~yt   80 (98)
T d1d5mb1           4 YPEVTVYPAK-TQPLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVS--TGLIQNGDWTFQTLVMLETVPRSGEVYT   80 (98)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEECCSSEEE--CCCEECSSSCEEEEEEEECCCCTTCEEE
T ss_pred             CCEEEEECCC-ccccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEE--CeEEeCCCcEEEEEEEeeEcCCCCCEEE
Confidence            5777665443 34456777899999984 33 489999999988543211  1111112223333444456677888999


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |.+.-.
T Consensus        81 C~V~H~   86 (98)
T d1d5mb1          81 CQVEHP   86 (98)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.13  E-value=2.9e-06  Score=58.29  Aligned_cols=79  Identities=19%  Similarity=0.220  Sum_probs=47.7

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-C---CCCeeEec---eEEecccceeEEEEEcccccC
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-P---TNNRFVIG---QFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-~---~~~~~~~~---~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      ...+...++.+|++++|.|.........+.|++.  |..   | .   ........   ............|.|.+++.+
T Consensus         4 ~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1i9ea_           4 TQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHWS   83 (115)
T ss_dssp             ECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCGG
T ss_pred             EcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEeccccccc
Confidence            3445567899999999999877655667889862  221   1 0   11110000   000001111235999999999


Q ss_pred             CCeEEEEEEEc
Q psy15667         74 DGGEYACVAEN   84 (286)
Q Consensus        74 D~G~Y~C~a~n   84 (286)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1i9ea_          84 DSAVYFCAVSG   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             ccceecccccC
Confidence            99999997653

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.12  E-value=3.5e-06  Score=57.87  Aligned_cols=77  Identities=13%  Similarity=0.229  Sum_probs=49.7

Q ss_pred             eEeccccccccCCCcEEEEEEeec-CCCCeeEEeeC--CEEc--------CC-----CCeeEeceEEecccceeEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASG-NPTPDIGWTLD--GFEL--------PT-----NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g-~p~p~v~W~~~--~~~l--------~~-----~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +...+..+++.+|++|+|.|.... .....+.|++.  |+.+        ..     ..++....  . .......|.|.
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~L~I~   78 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNF--Q-KPKSSIGLIIT   78 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEE--E-GGGTEEEEEEC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEE--e-ccCCEEEEEEC
Confidence            456677889999999999997653 44456889973  2211        00     11222211  1 11223469999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      +++.+|+|.|.|.+..
T Consensus        79 ~~~~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          79 ATQIEDSAVYFCAMRG   94 (115)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             CCCccccccccceeec
Confidence            9999999999997653

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.12  E-value=5.9e-07  Score=60.80  Aligned_cols=73  Identities=16%  Similarity=0.209  Sum_probs=46.4

Q ss_pred             cccccCCCcEEEEEEeecCC----CCeeEEeeCCEEcC--CCCeeEe------ceEEecccceeEEEEEcccccCCCeEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNP----TPDIGWTLDGFELP--TNNRFVI------GQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~~~~l~--~~~~~~~------~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      +++...|++++|.|......    ...+.|.+++..+.  .......      .......++  .+|.|.+++.+|+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g~--~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNN--LSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTT--TEEEECSCCGGGCEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCCc--EEEEECcCChHHCeEE
Confidence            46788999999999755321    23678888876541  1111110      001111233  2599999999999999


Q ss_pred             EEEEEcC
Q psy15667         79 ACVAENR   85 (286)
Q Consensus        79 ~C~a~n~   85 (286)
                      .|.+.+.
T Consensus        81 ~C~V~~~   87 (105)
T d1dr9a1          81 ECVVLKY   87 (105)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9988653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.11  E-value=7.5e-06  Score=56.37  Aligned_cols=83  Identities=13%  Similarity=0.173  Sum_probs=46.8

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|...+.-...+.|.+..+.              ....+            +.+...........++.
T Consensus        10 sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg--------------~~~~~------------l~~~~~~~~~~~~~~fs   63 (119)
T d1f3rb2          10 LLSASVGDRVTLSCKGSQNINNYLAWYQQKLG--------------EAPKL------------LIYNTNSLQTGIPSRFS   63 (119)
T ss_dssp             EECCCTTCCEEEEEECSSCCBTCEEEEEECTT--------------SCCEE------------EEETTTEECTTCCTTEE
T ss_pred             EEEECCCCCEEEEEEeCCCCcceeEEeeeecc--------------cccEE------------EEEeeccccCceeeeec
Confidence            34566899999999877654556889874321              11111            11111111111111111


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .. .......|.|.+++++|+|.|.|.+.+
T Consensus        64 ~~-~~~~~~~L~I~~~~~~DsavYyCa~~~   92 (119)
T d1f3rb2          64 GS-GSGTDYTLTISSLQPEDVATYFCYQYN   92 (119)
T ss_dssp             EE-EEBTEEEEEECSCCGGGCSEEEEEEES
T ss_pred             cc-CCCCEEEEEcccCccCCCeEEEeeccC
Confidence            11 112245799999999999999997765

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.11  E-value=3.2e-06  Score=58.11  Aligned_cols=74  Identities=22%  Similarity=0.249  Sum_probs=46.5

Q ss_pred             ccccccccCCCcEEEEEEeecC---CCCeeEEeeCC--EE---c---------CCCCeeEeceEEecccceeEEEEEccc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN---PTPDIGWTLDG--FE---L---------PTNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~~~~--~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +|.++.+.+|++|+|.|.....   ....+.|++..  ..   +         ....++.+..  . ......+|.|.++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~--~-~~~~~~sL~I~~l   81 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN--F-PENGTFVVNIAQL   81 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEE--E-TTTTEEEEEECSC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEee--e-CCCCEEEEEEhhh
Confidence            5777889999999999976432   22357798742  11   1         1122332211  1 1222346999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+..
T Consensus        82 ~~~DsG~Y~C~v~~   95 (116)
T d1xeda_          82 SQDDSGRYKCGLGI   95 (116)
T ss_dssp             CGGGCEEEEEEESC
T ss_pred             CcCCCEEEEEEEEc
Confidence            99999999997754

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.11  E-value=2e-05  Score=52.46  Aligned_cols=79  Identities=13%  Similarity=0.159  Sum_probs=48.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+.+.. .+..|+..+|.|.+.|. |. ..|+|.+||+++..+... ......+++.  ..+.|.|..   .+...
T Consensus         5 ~P~V~v~~~~-~~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~-~~~~~~~dgty~~~S~L~v~~---~~~~~   79 (101)
T d1fnga1           5 APEVTVLSRS-PVNLGEPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSE-TVFLPRDDHLFRKFHYLTFLP---STDDF   79 (101)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEE-CCCEECSSSCEEEEEEEEECC---CTTCC
T ss_pred             CCeEEEeCCC-cccCCCCEEEEEEEEeEECCCCEEEEEECCeecCCCcEe-CeEEECCCCcEEEEEEeEEcC---CCCCE
Confidence            6777765433 35568889999999985 43 489999999988643211 1111112222  123354443   45568


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        80 ytC~V~H~   87 (101)
T d1fnga1          80 YDCEVDHW   87 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99998764

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.10  E-value=8e-06  Score=55.97  Aligned_cols=84  Identities=19%  Similarity=0.226  Sum_probs=48.0

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~~~~~  241 (286)
                      .+.+.+|++++|.|.........+.|.+..+.              ....+            +.....+. ......+.
T Consensus         9 ~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg--------------~~~~~------------i~~~~~~~~~~~~~~~~   62 (115)
T d1i9ea_           9 RVTVSEGASLQLRCKYSYSATPYLFWYVQYPR--------------QGLQL------------LLKYYSGDPVVQGVNGF   62 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTT--------------SCCEE------------EEEECSSCSEEECGGGC
T ss_pred             eEEECCCCCEEEEEEEcCCCCCCEEEEEECCC--------------Cceee------------eeeeccceeccccCcce
Confidence            36677999999999987765667889874221              10011            11111010 00001111


Q ss_pred             eeee-cCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVSD-LDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .... .......|.|.++.++|+|.|.|.+..
T Consensus        63 ~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          63 EAEFSKSNSSFHLRKASVHWSDSAVYFCAVSG   94 (115)
T ss_dssp             EEECBTTTTBCCEEESSCCGGGCEEEEEEEEE
T ss_pred             eEEEeCcCCEEEEecccccccccceecccccC
Confidence            1111 122345799999999999999997764

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.10  E-value=1.4e-05  Score=52.59  Aligned_cols=79  Identities=23%  Similarity=0.357  Sum_probs=49.9

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEE
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEY   78 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y   78 (286)
                      .||.+.+....   ..|+.++|.|.+.|. |. ..|+|.+||..+.......  .. ...++.........+...|...|
T Consensus         2 ~PP~V~v~~~~---~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~--~~-~~~~~t~~~~s~l~~~~~~~~~y   75 (94)
T d1t7va1           2 DPPSVVVTSHQ---APGEKKKLKCLAYDFYPGKIDVHWTRAGEVQEPELRGD--VL-HNGNGTYQSWVVVAVPPQDTAPY   75 (94)
T ss_dssp             BCCEEEEEEEE---CTTSCEEEEEEEEEEBSSCEEEEEEETTEECCCSEEEE--EE-ETTTTEEEEEEEEEECTTCCSCE
T ss_pred             cCCEeEEeccC---CCCCCEEEEEEEEeEECCCCEEEEEECCEECCCcEEee--ee-cCCCCeEEEEEEeEeCCCCCCEE
Confidence            37888864322   358899999999994 54 4899999999876432221  11 12222332333444556677799


Q ss_pred             EEEEEcC
Q psy15667         79 ACVAENR   85 (286)
Q Consensus        79 ~C~a~n~   85 (286)
                      +|.+.-.
T Consensus        76 tC~V~H~   82 (94)
T d1t7va1          76 SCHVQHS   82 (94)
T ss_dssp             EEEEEET
T ss_pred             EEEEEEC
Confidence            9988653

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.10  E-value=5.4e-06  Score=55.15  Aligned_cols=76  Identities=16%  Similarity=0.208  Sum_probs=50.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.+...+ ...|..|++|+|.|...- +.-.+.|+|+|.....   .....  ...+. ...+.|..+...|+|.|+|.
T Consensus         6 kPsLsa~P-~~~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~---~~~~~--~~~~~-~~~f~~~~~~~~~~G~Y~C~   77 (99)
T d1nkra2           6 KPSLSAQP-GPTVLAGENVTLSCSSRS-SYDMYHLSREGEAHER---RLPAG--PKVNG-TFQADFPLGPATHGGTYRCF   77 (99)
T ss_dssp             CCEEEEES-CSEECTTCEEEEEEEESS-CCSEEEEEETTCSSCE---EEECE--EEETT-EEEEEEEEEECCSCEEEEEE
T ss_pred             CCEEEEeC-CCcccCCCeEEEEECCCC-CccEEEEEECCCcccc---EEEcc--ccCCc-cEEEEEeccccccCEEEEEE
Confidence            46666555 668899999999997653 4567889999854321   11100  01111 12467889999999999998


Q ss_pred             EEcC
Q psy15667         82 AENR   85 (286)
Q Consensus        82 a~n~   85 (286)
                      ....
T Consensus        78 y~~~   81 (99)
T d1nkra2          78 GSFH   81 (99)
T ss_dssp             EEET
T ss_pred             eecC
Confidence            6544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.10  E-value=1.5e-05  Score=52.42  Aligned_cols=78  Identities=14%  Similarity=0.155  Sum_probs=45.2

Q ss_pred             CCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeee-cC
Q psy15667        169 GEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSD-LD  247 (286)
Q Consensus       169 g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~-~~  247 (286)
                      |++++|.|.........+.|.+..+.              ....+..            ....+... ...++.... ..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g--------------~~p~~l~------------~~~~~~~~-~~~rf~~~~~~~   53 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSG--------------KSPELIM------------SIYSNGDK-EDGRFTAQLNKA   53 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTT--------------SCCEEEE------------EECSSEEE-EETTEEEEEETT
T ss_pred             CccEEEEEEEccccCCcEEEEEECCC--------------cccccce------------eeeeeccC-CCCcEEEEecCC
Confidence            78899999987777778999874322              1111111            01111111 111222221 12


Q ss_pred             CCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        248 SFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       248 ~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .....|.|.++.++|+|.|.|.+...
T Consensus        54 ~~~~sL~I~~~~~~Dsg~YyCa~~~~   79 (94)
T d2gj6d1          54 SQYVSLLIRDSQPSDSATYLCAVTTD   79 (94)
T ss_dssp             TTEEEEEECSCCGGGCEEEEEEEESS
T ss_pred             CCEEeEEeeccccCcCccceeeEecC
Confidence            23457999999999999999987643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.09  E-value=6.5e-06  Score=56.15  Aligned_cols=73  Identities=22%  Similarity=0.353  Sum_probs=46.8

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-------------CCCCeeEeceEEecccceeEEEEE
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-------------PTNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-------------~~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ...|...++.+|++++|.|...+ ....+.|++.  ++.   |             ....++..    .........|.|
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~I   77 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFA----ERPEGSVSTLKI   77 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEE----ECTTSSCEEEEE
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceee----ECCcCCEEEEEE
Confidence            34566778999999999998543 3457889873  211   1             01112211    111222346999


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|+|.|.|.+.
T Consensus        78 ~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          78 QRTQQEDSAVYLCASS   93 (112)
T ss_dssp             SSCCGGGCEEEEEEEE
T ss_pred             CCCCcCCCEEEEEeee
Confidence            9999999999999654

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.09  E-value=8.2e-06  Score=55.51  Aligned_cols=74  Identities=22%  Similarity=0.250  Sum_probs=47.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecC----CCCeeEEeeC--CEEc----C--------CCCeeEeceEEecccceeEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN----PTPDIGWTLD--GFEL----P--------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~----p~p~v~W~~~--~~~l----~--------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +...|...++.+|++|+|.|.....    -...+.|++.  |+.+    .        ...++..    ...+ ....|.
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~----~~~~-~~~~L~   78 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSG----TGSR-TDFTLI   78 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE----ECSS-SEEEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEE----ecCC-CEEEEE
Confidence            4456778889999999999986431    1224889973  3211    1        1112211    1122 234699


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+|.|.|.+.
T Consensus        79 I~~~~~~Dsa~YyCa~~   95 (111)
T d1j05a_          79 IDPVEADDVATYYCQQT   95 (111)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             EcccccccCccEEEeec
Confidence            99999999999999654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.09  E-value=3.7e-05  Score=52.31  Aligned_cols=95  Identities=19%  Similarity=0.162  Sum_probs=52.6

Q ss_pred             ceEEecCCCEEEEeeEeeec-----CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYP-----IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP  237 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p-----~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~  237 (286)
                      .+.+.+|++++|.|...+..     ...+.|.+..+.-                           .|....+........
T Consensus        11 s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~---------------------------~p~~l~~~~~~~~~~   63 (113)
T d1n4xl_          11 YLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQ---------------------------SPQLLIYKVSNRFSG   63 (113)
T ss_dssp             EEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTS---------------------------CCEEEEETTTEECTT
T ss_pred             EEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCC---------------------------ccEEEEEecCCCccc
Confidence            46677999999999976532     2458898743221                           111111122111111


Q ss_pred             -CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEE
Q psy15667        238 -RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQV  285 (286)
Q Consensus       238 -~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V  285 (286)
                       ..++... .......|.|.++.++|+|.|.|.+.+... .-..-..|+|
T Consensus        64 ~~~~fs~~-~~~~~~~L~I~~~~~~DsavYyCa~~~~~~~~FG~GTkLtV  112 (113)
T d1n4xl_          64 VPDRFSGS-GSGTDFTLKISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEI  112 (113)
T ss_dssp             CCTTEEEE-ECSSEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEE
T ss_pred             cCCCeeee-ccCCcccCccCCCCcccCEEEEEEECCCCCCEECCCEEEEE
Confidence             1122211 123356899999999999999997655431 1223344555

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.09  E-value=6.8e-06  Score=56.36  Aligned_cols=85  Identities=14%  Similarity=0.174  Sum_probs=48.7

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC-CeeCCCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPLSPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~~~~~~~  241 (286)
                      .+.+.+|+.++|.|.........+.|.+..+.              ....+            +..... +.......+.
T Consensus         9 ~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg--------------~~~~~------------l~~~~~~~~~~~~~~~~   62 (115)
T d1j8hd1           9 HVSVSEGALVLLRCNYSSSVPPYLFWYVQYPN--------------QGLQL------------LLKYTSAATLVKGINGF   62 (115)
T ss_dssp             EEEEETTSCEEECCEEECSSCCEEEEEEECTT--------------SCCEE------------EEEECSSCSEEECGGGC
T ss_pred             eEEEcCCCCEEEEEEeCCCCceeEEEEEccCC--------------Cccee------------eeEEeecccccccCCCC
Confidence            46678999999999987665667999884321              10000            000110 0000011111


Q ss_pred             eeeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        242 NVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       242 ~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..... ......|.|.++.++|+|.|.|.+...
T Consensus        63 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1j8hd1          63 EAEFKKSETSFHLTKPSAHMSDAAEYFCAVSES   95 (115)
T ss_dssp             EEECBGGGTBCCEEESSCCGGGCEEEEEEEESS
T ss_pred             EEEECCCCCEEEEeeccccccCCccceeeecCC
Confidence            11111 112346999999999999999998764

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.08  E-value=1.1e-05  Score=55.88  Aligned_cols=73  Identities=22%  Similarity=0.372  Sum_probs=47.1

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE---c---C-----------CCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE---L---P-----------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~---l---~-----------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+...++.+|++++|+|.+.|..  ...+.|++.  |+.   |   .           ..+||.+...   .......|.
T Consensus         7 p~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~---~~~~~~~L~   83 (123)
T d1hxmb1           7 PQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRI---PETSTSTLT   83 (123)
T ss_dssp             CCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEE---TTTTEEEEE
T ss_pred             CCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeee---ccccceeec
Confidence            34456788999999999998743  345789873  221   1   0           1234433211   112234699


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+|.|.|.+.
T Consensus        84 i~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          84 IHNVEKQDIATYYCALW  100 (123)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccccccccCcEEEEeee
Confidence            99999999999999653

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.08  E-value=1.3e-05  Score=54.74  Aligned_cols=79  Identities=22%  Similarity=0.309  Sum_probs=49.5

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc----C-CCCeeEec---eEEecccceeEEEEEcccccCC
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL----P-TNNRFVIG---QFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l----~-~~~~~~~~---~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +...+..+++.+|++++|.|...+. ...+.|++.  +..+    . .+......   ............|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            4566778889999999999987653 456899973  2211    0 00100000   0001112233469999999999


Q ss_pred             CeEEEEEEEc
Q psy15667         75 GGEYACVAEN   84 (286)
Q Consensus        75 ~G~Y~C~a~n   84 (286)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (113)
T d1h5ba_          83 SGTYFCAAEA   92 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEecC
Confidence            9999997654

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.08  E-value=6.9e-06  Score=55.87  Aligned_cols=74  Identities=27%  Similarity=0.352  Sum_probs=48.6

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-C---CCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-P---TPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-p---~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +...|..+.+.+|++|+|.|...+. .   ...+.|++.  |..+            ....|+..+    ..+. ...|+
T Consensus         4 ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~----~~~~-~~~L~   78 (111)
T d2gsia1           4 LTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGS----GSGT-DFTLN   78 (111)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EETT-EEEEE
T ss_pred             eEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEe----cCCC-chhcc
Confidence            4566778889999999999987542 1   224789873  2211            112344321    1222 34699


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+|.|.|.+.
T Consensus        79 I~~~~~~DsA~YyCa~~   95 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHI   95 (111)
T ss_dssp             ESSCCGGGCEEEEEEEC
T ss_pred             cccccccCCceEEEEEC
Confidence            99999999999999653

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=9.7e-06  Score=55.44  Aligned_cols=26  Identities=23%  Similarity=0.258  Sum_probs=22.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ...|.|.++..+|+|.|.|.+....+
T Consensus        73 ~~~L~I~~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          73 SFNFTITASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEECSBT
T ss_pred             EEEEeecccccccCCCceEeCCCCCC
Confidence            55799999999999999998776544

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.08  E-value=1.3e-05  Score=54.79  Aligned_cols=85  Identities=15%  Similarity=0.295  Sum_probs=48.6

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|...+. ...+.|.+..+.              ....+            +.+...........+..
T Consensus         9 ~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg--------------~~p~~------------l~~~~~~~~~~~~~~~~   61 (115)
T d1ogad1           9 FLSIQEGENLTVYCNSSSV-FSSLQWYRQEPG--------------EGPVL------------LVTVVTGGEVKKLKRLT   61 (115)
T ss_dssp             EEEEETTCCEEEEEECSSC-CSCEEEEEECTT--------------SCCEE------------EEEECSTTCEEEETTEE
T ss_pred             eEEECCCCCEEEEEEECCC-CceEEEEecCCC--------------Cceee------------eeeeeecccceeecccc
Confidence            4667799999999987654 346889884322              11111            11111111111111111


Q ss_pred             eee-cCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        243 VSD-LDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       243 ~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +.. .......|.|.++..+|+|.|.|.+....
T Consensus        62 ~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~~   94 (115)
T d1ogad1          62 FQFGDARKDSSLHITAAQPGDTGLYLCAGAGSQ   94 (115)
T ss_dssp             EEECTTSSEEEEEESSCCGGGCEEEEEEEECTT
T ss_pred             cccccccceeeeeecCCCccceeeEcccccCCC
Confidence            111 11235689999999999999999877543

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.07  E-value=7.4e-06  Score=55.57  Aligned_cols=74  Identities=23%  Similarity=0.335  Sum_probs=48.2

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCC---eeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTP---DIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p---~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      ++.. ++..++.+|++++|.|...+....   .+.|++.  |+.+            ....|+..+    ..++ ...|.
T Consensus         3 ~~tQ-~~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s----~~~~-~~~L~   76 (110)
T d1oaql_           3 VVTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGS----LIGN-KAALT   76 (110)
T ss_dssp             CEEE-CSEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEE----EETT-EEEEE
T ss_pred             CEee-CCCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeec----cccc-ceeee
Confidence            3444 446789999999999998753322   3889962  2221            112344332    1222 34699


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+|.|.|.+.
T Consensus        77 I~~~~~~Dsa~YyCa~~   93 (110)
T d1oaql_          77 ITGAQTEDEAIYFCALW   93 (110)
T ss_dssp             EESCCGGGCEEEEEEEE
T ss_pred             cCCCCccccEeEEEEcc
Confidence            99999999999999754

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.07  E-value=2.4e-05  Score=52.93  Aligned_cols=84  Identities=15%  Similarity=0.265  Sum_probs=49.7

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      +.+.+.+|++++|.|...+.-...+.|.+..+.                          ..+.-+.+...........++
T Consensus        11 ~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g--------------------------~~p~~l~~~~~~~~~~~~~~f   64 (109)
T d1bwwa_          11 SSLSASVGDRVTITCQASQDIIKYLNWYQQKPG--------------------------KAPKLLIYEASNLQAGVPSRF   64 (109)
T ss_dssp             SEEEECTTCCEEEEEEESSCCTTCEEEEEECTT--------------------------SCCEEEEETTTEECTTCCTTE
T ss_pred             CEEEECCCCCEEEEEEecCCCCCcceEeeeccC--------------------------CCCEEEEEecccCCCCCCCCE
Confidence            346778899999999987765667889884322                          111011111111111111122


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .... ......|.|.+++++|+|.|.|.+..
T Consensus        65 s~~~-~~~~~~L~I~~l~~~Dsa~YyCA~~~   94 (109)
T d1bwwa_          65 SGSG-SGTDYTFTISSLQPEDIATYYCQQYQ   94 (109)
T ss_dssp             EEEE-ETTEEEEEESSCCGGGCEEEEEEECS
T ss_pred             EeeC-CCCEeEEEEeeceeCcCceEEEeecC
Confidence            2221 22356799999999999999998765

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.07  E-value=3.5e-05  Score=52.25  Aligned_cols=37  Identities=22%  Similarity=0.352  Sum_probs=25.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEEC
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQVK  286 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V~  286 (286)
                      ...|.|.++.++|+|.|.|.+..... .-..-..|+||
T Consensus        74 ~~~L~I~~~~~~DsA~YyCa~~~~~~~~FG~GT~LtVk  111 (111)
T d2gsia1          74 DFTLNIHPVEEEDAATYYCSHIRELPRSSGGGTKLEIK  111 (111)
T ss_dssp             EEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEE
T ss_pred             chhcccccccccCCceEEEEECCCCCCEECCCEEEEEC
Confidence            46799999999999999997665421 12223456664

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.07  E-value=1.1e-05  Score=55.74  Aligned_cols=76  Identities=18%  Similarity=0.281  Sum_probs=49.9

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      +......+.+.+|++++|.|...+..  ...+.|++.  |+.+            ....|+..+..  ... ....|.|.
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~--~~~-~~~~L~i~   80 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDID--IAK-NLAVLKIL   80 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEE--GGG-TEEEEEES
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeecc--ccc-cceecccc
Confidence            44556667899999999999987653  346889973  2211            11234433221  112 23569999


Q ss_pred             ccccCCCeEEEEEEE
Q psy15667         69 HVTVEDGGEYACVAE   83 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~   83 (286)
                      +++.+|+|.|.|...
T Consensus        81 ~~~~~Dsa~YyCA~~   95 (120)
T d1hxma1          81 APSERDEGSYYCACD   95 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             cccccCCceeecCcc
Confidence            999999999999643

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.06  E-value=3.6e-05  Score=52.22  Aligned_cols=85  Identities=19%  Similarity=0.367  Sum_probs=48.2

Q ss_pred             CceEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      +.+.+.+|++++|.|...+.-  ...+.|.+..+.-.              ..+..            +...........
T Consensus         8 ~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~--------------~~~l~------------~~~~~~~~~~~~   61 (111)
T d1rzfl1           8 PSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTV--------------PKLVI------------YENNERPSGIPD   61 (111)
T ss_dssp             SEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSC--------------CEEEE------------BTTTBCCTTCCT
T ss_pred             cceEeCCCCCEEEEEEECCcCCcCCcccceeeecccc--------------eEEEe------------eecCCCcccccc
Confidence            356777899999999876543  34588987432211              00000            000000001111


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ++.... ......|.|.+++.+|+|.|.|.+...
T Consensus        62 r~~~~~-~~~~~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          62 RFSGSK-SGTSATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             TEEEEE-ETTEEEEEESSCCGGGCSEEEEEEEET
T ss_pred             ceeeeC-CCCEeeeEEeeeccccCcceEEeecCC
Confidence            222221 223568999999999999999987643

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.06  E-value=5.2e-05  Score=51.96  Aligned_cols=85  Identities=19%  Similarity=0.274  Sum_probs=50.9

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--C--CC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--S--PR  238 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~--~~  238 (286)
                      .+.+.+|++++|.|...+.....+.|.+..+.              ....+.-.           ....+...  .  ..
T Consensus        10 ~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g--------------~~~~~l~~-----------~~~~~~~~~~~~~~~   64 (118)
T d2ij0c1          10 MVIVKSGTSVKIECRSLDTNIHTMFWYRQFPK--------------QSLMLMAT-----------SHQGFNAIYEQGVVK   64 (118)
T ss_dssp             EEEECTTCCEEEEEEECSSCCSEEEEEEECTT--------------SCEEEEEE-----------EETTSCCEECTTCCT
T ss_pred             eEEEcCCCCEEEEEEEcCCcccEEEEEEEccc--------------ccceeeee-----------ccccccceecccccc
Confidence            35677899999999987766678999985322              11111111           11111111  1  11


Q ss_pred             CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++.+.........|.|.+++++|+|.|.|.+.-
T Consensus        65 ~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   98 (118)
T d2ij0c1          65 DKFLINHASPTLSTLTVTSAHPEDSGFYVCSALA   98 (118)
T ss_dssp             TTEEEEECSSSEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ccceeeccccccccccccccccccCceEEEEEec
Confidence            2233332223345799999999999999998764

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.06  E-value=2.9e-05  Score=52.35  Aligned_cols=37  Identities=16%  Similarity=0.160  Sum_probs=26.2

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEeccc---ceeeEEEEEE
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNTAA---QARYSSKLQV  285 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~~g---~~~~~~~L~V  285 (286)
                      ....|.|.+++.+|+|.|.|.......   .....+.|.|
T Consensus        68 ~~~~L~I~~l~~~DsG~Y~C~v~~~~~~~~~~~~~~~l~V  107 (108)
T d1hkfa_          68 GFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV  107 (108)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEECTTTCCEEEEEEEEEEE
T ss_pred             CEEEEEEhhhCCCCCEEEEEEEecCCCCcEEEeeEEEEEE
Confidence            356799999999999999998764432   2333444554

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.06  E-value=3.1e-05  Score=51.26  Aligned_cols=80  Identities=18%  Similarity=0.266  Sum_probs=48.7

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCe
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGG   76 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G   76 (286)
                      .||.+.+.+.. .+..|+..+|.|.+.|. | .-.|+|.+||.++..+.. .......+++..  ...|.+.   .+|..
T Consensus         4 ~~P~V~v~~~~-~~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~-~~~~~~~~dgtf~~~s~l~v~---~~~~~   78 (99)
T d1uvqa1           4 EVPEVTVFSKS-PVTLGQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVS-ETSFLSKSDHSFFKISYLTFL---PSADE   78 (99)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEETTEEECTTEE-ECCCEECTTSCEEEEEEEEEC---CCTTC
T ss_pred             cCCEEEEEcCC-cccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCcE-ecceEECCCCCEEEEEEEEEc---CCCCC
Confidence            47877765433 35567889999999995 3 357999999998864321 111111222221  2224443   45556


Q ss_pred             EEEEEEEcC
Q psy15667         77 EYACVAENR   85 (286)
Q Consensus        77 ~Y~C~a~n~   85 (286)
                      .|+|++.-.
T Consensus        79 ~ytC~V~H~   87 (99)
T d1uvqa1          79 IYDCKVEHW   87 (99)
T ss_dssp             CEEEEEECT
T ss_pred             EEEEEEEeC
Confidence            899998764

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.06  E-value=2.5e-05  Score=53.26  Aligned_cols=85  Identities=16%  Similarity=0.313  Sum_probs=49.6

Q ss_pred             ceEEecCCCEEEEeeEeeec-CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC-eeCCCCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYP-IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-KPLSPRFP  240 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p-~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~~~~~~~~  240 (286)
                      .+.+.+|++++|.|.+.+.. ...+.|.+..+.              ....+            +..+..+ .......+
T Consensus         8 ~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g--------------~~p~~------------l~~~~~~~~~~~~~~r   61 (114)
T d3bp5a1           8 WLTVSEGANATFTCSLSNWSEDLMLNWNRLSPS--------------NQTEK------------QAAFSNGLSQPVQDAR   61 (114)
T ss_dssp             EEEEETTCCEEEEEEESCCCTTCEEEEEEECTT--------------CCEEE------------EEEEETTEEEESSCTT
T ss_pred             eEEECCCCCEEEEEEECCCCCcceEEEEEECCC--------------CCCee------------eEEeeeccccccccCc
Confidence            46678999999999986543 356889874321              11111            1111111 11112223


Q ss_pred             ceeeecC-CCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        241 VNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       241 ~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +.+.... .....|.|.++.++|+|.|.|.+...
T Consensus        62 f~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~   95 (114)
T d3bp5a1          62 FQIIQLPNRHDFHMNILDTRRNDSGIYLCGAISL   95 (114)
T ss_dssp             EEEEECTTSSEEEEEESSCCGGGCEEEEEEEECS
T ss_pred             ceEEEeCCCCEEEEEECccCcCCCeEEEEEEEeC
Confidence            3333322 22456999999999999999987654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.05  E-value=1.1e-05  Score=54.28  Aligned_cols=84  Identities=15%  Similarity=0.257  Sum_probs=52.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+.+-+.......++.++|.|.+.| .|. ..|.|.+||..+..............++.  ..+.|+|..-.......
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~   83 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDE   83 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGG
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCE
Confidence            566654444444556778999999998 343 58999999998754321111011111222  23457777766666678


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+...
T Consensus        84 ytC~V~H~   91 (105)
T d1fp5a2          84 FICRAVHE   91 (105)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99998764

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1.3e-05  Score=54.56  Aligned_cols=85  Identities=15%  Similarity=0.198  Sum_probs=50.0

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      +.+.+.+|++++|.|...+.....+.|.+..+.              ....+.....           ..+..- ...+.
T Consensus         8 ~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g--------------~~~~~l~~~~-----------~~~~~~-~~~~~   61 (111)
T d1bd2d1           8 PSLSVQEGRISILNCDYTNSMFDYFLWYKKYPA--------------EGPTFLISIS-----------SIKDKN-ADGRF   61 (111)
T ss_dssp             SEEEEETTSCEEEEEEECCTTCCEEEEEEECTT--------------SCCEEEEEEE-----------TTCSEE-EETTE
T ss_pred             CEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCC--------------Ccceeeeeee-----------ceeccc-cCCcc
Confidence            346678999999999887766667889884322              1111111110           000000 01111


Q ss_pred             eee-ecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVS-DLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ... ........|.|.++..+|+|.|.|.+..
T Consensus        62 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          62 TVFLNKSAKHLSLHIVPSQPGDSAVYFCAAME   93 (111)
T ss_dssp             EEEEETTTTEEEEEESSCCGGGCEEEEEEEES
T ss_pred             eEEEEccCCEEEEEECCCcccccEEEEeeccC
Confidence            111 1223466899999999999999997763

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.05  E-value=1e-05  Score=55.35  Aligned_cols=76  Identities=21%  Similarity=0.290  Sum_probs=49.2

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------CCC------CeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------PTN------NRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~~~------~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      ++..+...++.+|++++|.|...+. ...+.|++.  |..+      ...      .++..  .... ......|.|.++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~--~~~~-~~~~~~L~I~~~   78 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTF--QFGD-ARKDSSLHITAA   78 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEE--EECT-TSSEEEEEESSC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeeccccc--cccc-ccceeeeeecCC
Confidence            4556777889999999999987654 346889973  2211      111      11111  0111 122356999999


Q ss_pred             ccCCCeEEEEEEEc
Q psy15667         71 TVEDGGEYACVAEN   84 (286)
Q Consensus        71 ~~~D~G~Y~C~a~n   84 (286)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (115)
T d1ogad1          79 QPGDTGLYLCAGAG   92 (115)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CccceeeEcccccC
Confidence            99999999997653

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.04  E-value=1.1e-05  Score=55.09  Aligned_cols=74  Identities=22%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc---------------CCCCeeEeceEEecccceeEEEEEc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL---------------PTNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l---------------~~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...|...++.+|++++|.|...+. ...+.|++.  |+.+               ....++...    ........|+|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~I~   77 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGR----QFSNSRSEMNVS   77 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEE----ECTTSCEEEEEC
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeecccccccccccccceeec----cCcCCeeEEEEC
Confidence            345666789999999999986543 357889972  2221               011122111    111223469999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      ++..+|+|.|.|.+..
T Consensus        78 ~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          78 TLELGDSALYLCASSL   93 (113)
T ss_dssp             SCCGGGCEEEEEEEES
T ss_pred             CCCcccceeeeeeeeC
Confidence            9999999999996643

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=3.4e-06  Score=57.38  Aligned_cols=71  Identities=11%  Similarity=0.279  Sum_probs=41.5

Q ss_pred             cccccCCCcEEEEEEeecCCC---CeeE--EeeCCE-Ec-----------CCCCeeEeceEEecccceeEEEEEcccccC
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT---PDIG--WTLDGF-EL-----------PTNNRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~---p~v~--W~~~~~-~l-----------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      ++.+..|++++|.|.....+.   ..+.  |.+++. .+           ..+.++..... ...++  .+|.|.+++.+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~-~~~~~--~sL~I~~v~~~   79 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTS-FDSDS--WTLRLHNLQIK   79 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEE-EETTT--TEEEECSCCGG
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEe-ccCCe--EEEEECCCChh
Confidence            567789999999998764322   2233  444332 11           01122211000 11122  25999999999


Q ss_pred             CCeEEEEEEEc
Q psy15667         74 DGGEYACVAEN   84 (286)
Q Consensus        74 D~G~Y~C~a~n   84 (286)
                      |+|.|.|.+..
T Consensus        80 D~G~Y~C~V~~   90 (110)
T d1ncna_          80 DKGLYQCIIHH   90 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEEe
Confidence            99999998753

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.04  E-value=1.3e-05  Score=54.58  Aligned_cols=24  Identities=29%  Similarity=0.466  Sum_probs=20.7

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEec
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ...|.|.+++++|+|.|.|.+...
T Consensus        64 ~~~L~I~~l~~~Dsa~YyCA~~~~   87 (112)
T d1sq2n_          64 SFSLRINDLTVEDGGTYRCGLGVA   87 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECBT
T ss_pred             eeeeEecCCcCccCEEEeEEEecC
Confidence            447999999999999999987654

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.04  E-value=2e-05  Score=53.94  Aligned_cols=100  Identities=14%  Similarity=0.262  Sum_probs=55.3

Q ss_pred             CceEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC--CC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PR  238 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~--~~  238 (286)
                      +.+.+.+|++++|.|...+. ....+.|.+..+.              ....+..-..           .......  ..
T Consensus         8 ~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g--------------~~~~~l~~~~-----------~~~~~~~~~~~   62 (116)
T d1tvda_           8 PDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPD--------------YSFQFVFYGD-----------DSRSEGADFTQ   62 (116)
T ss_dssp             CCEEEETTCCEEECCEEECCSSSCCEEEEEECTT--------------SCEEEEEEEC-----------SSCEEECGGGT
T ss_pred             CCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCC--------------CceEEeeecc-----------cccccccCccc
Confidence            45677899999999987653 4567889873211              1111111000           0000000  11


Q ss_pred             CCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccceee----EEEEEEC
Q psy15667        239 FPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQARY----SSKLQVK  286 (286)
Q Consensus       239 ~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~----~~~L~V~  286 (286)
                      .++.+... ......|+|.+++.+|+|.|.|......+....    ...|.|+
T Consensus        63 ~rf~~~~~~~~~~~~L~I~~~~~~Dsg~YyCa~~~~~~~~~~~FG~GT~L~V~  115 (116)
T d1tvda_          63 GRFSVKHILTQKAFHLVISPVRTEDSATYYCAFTLPPPTDKLIFGKGTRVTVE  115 (116)
T ss_dssp             TTEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEECTTTTCCEEECCCEEEEEE
T ss_pred             eEEEEEecCceeEEeeeecCccccccccceeeEecCCCCceeEECcCEEEEEE
Confidence            23333221 223457999999999999999987765433321    2456664

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.04  E-value=3.1e-06  Score=57.65  Aligned_cols=76  Identities=17%  Similarity=0.247  Sum_probs=49.7

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------C-C-----CCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------P-T-----NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~-~-----~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...+..+++.+|++++|.|.....-...+.|++.  |+.+      . .     ..++....  . .......|.|.++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~--~-~~~~~~~L~i~~~   79 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATY--N-KEATSFHLQKASV   79 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEC--B-TTTTBCCEEEEEE
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeee--c-CCCCEEeeeecCc
Confidence            55677788999999999999876554556899973  3211      0 0     11221110  1 1112245899999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      ..+|+|.|.|.+.
T Consensus        80 ~~~Dsa~YyCA~~   92 (110)
T d1ac6a_          80 QESDSAVYYCALS   92 (110)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CcCCCcccceeec
Confidence            9999999999764

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.04  E-value=1.1e-05  Score=54.67  Aligned_cols=85  Identities=20%  Similarity=0.348  Sum_probs=53.0

Q ss_pred             CCCeeEec-cccccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceE-E--ecccc--eeEEEEEccccc
Q psy15667          1 TPPILTYS-FIEQTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQF-V--SGHGD--VISHVNISHVTV   72 (286)
Q Consensus         1 ~~p~~~~~-~~~~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~-~--~~~~~--~~~~l~I~~~~~   72 (286)
                      .||.+... +....+..|+.++|.|.+.|. |.. .|+|++||+.+..+........ .  ..++.  ..+.|.|..-..
T Consensus         3 ~~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           3 FRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            36777754 444467789999999999984 544 8999999998864322110000 0  01111  233466665555


Q ss_pred             CCCeEEEEEEEcC
Q psy15667         73 EDGGEYACVAENR   85 (286)
Q Consensus        73 ~D~G~Y~C~a~n~   85 (286)
                      .....|+|.+...
T Consensus        83 ~~g~~ytC~V~H~   95 (108)
T d1ow0a2          83 KKGDTFSCMVGHE   95 (108)
T ss_dssp             HHTCCEEEEEECT
T ss_pred             CCCCEEEEEEEeC
Confidence            5556999999764

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.03  E-value=9.2e-06  Score=55.34  Aligned_cols=72  Identities=31%  Similarity=0.487  Sum_probs=46.9

Q ss_pred             eEeccccccccCCCcEEEEEEeecC-----CCCeeEEeeC--CEE----cC--------CCCeeEeceEEecccceeEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN-----PTPDIGWTLD--GFE----LP--------TNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~-----p~p~v~W~~~--~~~----l~--------~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      +...+..+.+.+|++|+|.|...+.     ....+.|++.  |..    +.        ...++..    ... +....|
T Consensus         4 lTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~----~~s-~~~~~L   78 (112)
T d1mjul1           4 MTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSG----SGS-GTAFTL   78 (112)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE----EEC-SSEEEE
T ss_pred             eEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEe----ecC-CCEEEE
Confidence            3455677889999999999987653     1345789863  221    11        1122221    111 223469


Q ss_pred             EEcccccCCCeEEEEE
Q psy15667         66 NISHVTVEDGGEYACV   81 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~   81 (286)
                      .|.+++.+|+|.|.|.
T Consensus        79 ~Is~~~~~DsAvYyCa   94 (112)
T d1mjul1          79 RISRVEAEDVGVYYCL   94 (112)
T ss_dssp             EESSCCGGGCEEEEEE
T ss_pred             EECCccccCCceEEEE
Confidence            9999999999999994

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.03  E-value=1.1e-05  Score=54.72  Aligned_cols=85  Identities=15%  Similarity=0.174  Sum_probs=47.9

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      +.+.+.+|++++|.|.....-...+.|.+..+.              ....+.            .............+.
T Consensus         7 ~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg--------------~~~~~l------------~~~~~~~~~~~~~~~   60 (110)
T d1u3ha1           7 QSLTVWEGETAILNCSYENSAFDYFPWYQQFPG--------------EGPALL------------ISILSVSDKKEDGRF   60 (110)
T ss_dssp             SSEEEETTSCEEEEEEECCTTEEEEEEEEECTT--------------SCCEEE------------EEEETTCSEEEETTE
T ss_pred             CEEEEcCCCCEEEEEEecCCCCcEEEEEeeccc--------------cceeee------------eeeccccccccccce
Confidence            346778999999999887654456889874321              111110            011110000001111


Q ss_pred             eeee-cCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVSD-LDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~~-~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .... .......|.|.++..+|+|.|.|.+.-
T Consensus        61 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          61 TIFFNKREKKLSLHIADSQPGDSATYFCAASA   92 (110)
T ss_dssp             EEEEETGGGEEEEEESSCCTTSCSEEEECCEE
T ss_pred             eEEECCCCCeeEeEeccCCCCCceeEeeeecC
Confidence            1111 112345799999999999999998763

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.03  E-value=4.8e-06  Score=56.75  Aligned_cols=70  Identities=21%  Similarity=0.405  Sum_probs=46.4

Q ss_pred             cccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      +...++.+|++++|.|...+.-  ...+.|++.  +..   |         ....++...    ..+. ...|.|.+++.
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~----~~~~-~~~L~I~~~~~   81 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGS----KSGT-SATLGITGLQT   81 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEE----EETT-EEEEEESSCCG
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeee----CCCC-EeeeEEeeecc
Confidence            5578899999999999876532  345889963  211   1         012233221    1122 34699999999


Q ss_pred             CCCeEEEEEEE
Q psy15667         73 EDGGEYACVAE   83 (286)
Q Consensus        73 ~D~G~Y~C~a~   83 (286)
                      +|+|.|.|.+.
T Consensus        82 ~Dsa~YyCA~~   92 (111)
T d1rzfl1          82 GDEADYYCGTW   92 (111)
T ss_dssp             GGCSEEEEEEE
T ss_pred             ccCcceEEeec
Confidence            99999999754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.02  E-value=2.9e-05  Score=52.40  Aligned_cols=84  Identities=19%  Similarity=0.324  Sum_probs=48.4

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.........+.|.+..+.-.              ..+.-            +...........+..
T Consensus         9 sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~--------------~~~l~------------~~~~~~~~~~~~~~~   62 (109)
T d1w72l1           9 SVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQA--------------PVLVV------------YDDSDRPSGIPERFS   62 (109)
T ss_dssp             EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSC--------------CEEEE------------BTTTBCCTTSCTTEE
T ss_pred             eEEECCCCCEEEEEEcCCCCCcceeeeeccccce--------------eEEEE------------EccccCCCceeeeEe
Confidence            4667789999999987665556789988432211              11100            000000000011121


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ... ......|.|.+++.+|+|.|.|.+...
T Consensus        63 ~~~-~~~~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          63 GSN-SGNMATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEE-ETTEEEEEESSCCGGGCEEEEEEEEET
T ss_pred             eec-CCCccceEEeeeccCCCEEEEEEecCC
Confidence            211 233568999999999999999987654

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.02  E-value=1.2e-05  Score=53.94  Aligned_cols=73  Identities=27%  Similarity=0.379  Sum_probs=48.0

Q ss_pred             eEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-------C--CCCeeEeceEEecccceeEEEEEccc
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-------P--TNNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-------~--~~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      +...|..+++.+|++++|.|..... ...+.|++.  +..   +       .  ...++...    .. +....|.|.++
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~----~~-~~~~~L~I~~~   76 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGS----GS-GTSYSLTISSM   76 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEE----EE-TTEEEEEESSC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEe----cC-CCEEEEEeccc
Confidence            4567788899999999999986543 345789973  211   1       0  11222211    11 12346999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|+|.|.|.+.
T Consensus        77 ~~~Dsa~YyCa~~   89 (104)
T d1yqvl1          77 ETEDAATYYCQQW   89 (104)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCCeEEEEec
Confidence            9999999999653

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.02  E-value=4.2e-06  Score=54.93  Aligned_cols=70  Identities=20%  Similarity=0.281  Sum_probs=48.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|.+...+ ..+|..|++|+|.|... .+.-.+.|+|+|..-.    . ..+  .  ......+.|.+++.+|+|.|+|.
T Consensus         4 kPsLsa~P-~~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~----~-~~~--~--~~~~a~F~i~~v~~~~~G~Y~C~   72 (93)
T d1olla2           4 TPTLSVHP-GPEVISGEKVTFYCRLD-TATSMFLLLKEGRSSH----V-QRG--Y--GKVQAEFPLGPVTTAHRGTYRCF   72 (93)
T ss_dssp             CCEEEEES-CSEEETTCEEEEEEECS-SSCSEEEEEEESSSCE----E-EEE--E--CSSEEEEEEEECCGGGCEEEEEE
T ss_pred             CCEEEEeC-CCcccCCCcEEEEECCC-CCCCEEEEEECCCccc----e-eec--C--CCceeEEEecccChhcCceEEEE
Confidence            46666544 56788999999999865 3455788888875321    1 101  1  11223589999999999999996


Q ss_pred             E
Q psy15667         82 A   82 (286)
Q Consensus        82 a   82 (286)
                      .
T Consensus        73 ~   73 (93)
T d1olla2          73 G   73 (93)
T ss_dssp             C
T ss_pred             e
Confidence            4

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.01  E-value=9.3e-06  Score=55.43  Aligned_cols=70  Identities=26%  Similarity=0.443  Sum_probs=46.4

Q ss_pred             cccccccCCCcEEEEEEeecC--CCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ++..++.+|++|+|.|...+.  ....+.|++.  +..   |         ....++..+    ..+ ....|.|.+++.
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~----~~~-~~~~L~I~~v~~   81 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSAS----KSG-TSASLAISGLES   81 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEE----EET-TEEEEEESSCCG
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceec----CCC-CeeeeEecccCc
Confidence            346788999999999987754  3456889974  221   1         011233221    112 234699999999


Q ss_pred             CCCeEEEEEEE
Q psy15667         73 EDGGEYACVAE   83 (286)
Q Consensus        73 ~D~G~Y~C~a~   83 (286)
                      +|+|.|.|.+.
T Consensus        82 ~DsA~YyCA~~   92 (114)
T d2rhea_          82 EDEADYYCAAW   92 (114)
T ss_dssp             GGCEEEEEEEE
T ss_pred             ccCceEEEeec
Confidence            99999999653

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=1.5e-05  Score=52.76  Aligned_cols=77  Identities=17%  Similarity=0.174  Sum_probs=45.7

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+...+ .-+|..|++|+|.|... .....+..+|+|........  ..+. ...+.....+.|.+++.+|+|.|+|..
T Consensus         5 PsLsa~P-~~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~--~~~~-~~~~~~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           5 PTLSAQP-SPVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCL--NSQP-HARGSSRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEECS-SCCSEEEEEEC------CEE--EC-------CCEEEEEECCCCTTSCEEEEEEE
T ss_pred             CEEEeeC-CCccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEee--eeEE-cCCCceEEEEEeeecccCCCeEEEEee
Confidence            5666555 55799999999999864 23446667788764321111  0000 001112235889999999999999976


Q ss_pred             Ec
Q psy15667         83 EN   84 (286)
Q Consensus        83 ~n   84 (286)
                      ..
T Consensus        80 ~~   81 (98)
T d1ugna2          80 YD   81 (98)
T ss_dssp             EC
T ss_pred             Ec
Confidence            54

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.00  E-value=1.6e-05  Score=54.13  Aligned_cols=75  Identities=29%  Similarity=0.440  Sum_probs=48.9

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISH   64 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~   64 (286)
                      .+...|...++.+|++|+|.|...+..     ...+.|++.  |+.   |         ....++..    ...+ ....
T Consensus         4 ~ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~----~~~~-~~~~   78 (113)
T d1n4xl_           4 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSG----SGSG-TDFT   78 (113)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE----EECS-SEEE
T ss_pred             eEeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeee----eccC-Cccc
Confidence            345667788999999999999875432     245889863  221   1         11223321    1122 2346


Q ss_pred             EEEcccccCCCeEEEEEEE
Q psy15667         65 VNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |+|.+++.+|+|.|.|...
T Consensus        79 L~I~~~~~~DsavYyCa~~   97 (113)
T d1n4xl_          79 LKISRVEAEDLGIYYCFQG   97 (113)
T ss_dssp             EEESSCCGGGCEEEEEEEC
T ss_pred             CccCCCCcccCEEEEEEEC
Confidence            9999999999999999543

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.00  E-value=1.6e-05  Score=54.37  Aligned_cols=87  Identities=13%  Similarity=0.106  Sum_probs=48.5

Q ss_pred             CceEEecCCCEEEEeeEee-ecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAG-YPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~-~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      +.+.+.+|++++|.|.... .....+.|.+..+.              +...+.-           .....+..-....+
T Consensus         7 ~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g--------------~~~~~l~-----------~~~~~~~~~~~~~~   61 (115)
T d1fo0a_           7 TSISVMEKTTVTMDCVYETQDSSYFLFWYKQTAS--------------GEIVFLI-----------RQDSYKKENATVGH   61 (115)
T ss_dssp             CEEEEETTCCEEECCEECCCCSSCEEEEEEECTT--------------CCEEEEE-----------EEETTCCSCCEETT
T ss_pred             CEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCC--------------CCCEEEE-----------EEecceeecccCCc
Confidence            3467789999999998754 33446889874321              1111110           01101110001112


Q ss_pred             ceeeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        241 VNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       241 ~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..+... ......|.|.+++++|+|.|.|.+...
T Consensus        62 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (115)
T d1fo0a_          62 YSLNFQKPKSSIGLIITATQIEDSAVYFCAMRGD   95 (115)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             eEEEEeccCCEEEEEECCCCccccccccceeecC
Confidence            222221 123457999999999999999987644

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.00  E-value=1.9e-05  Score=53.37  Aligned_cols=70  Identities=20%  Similarity=0.355  Sum_probs=44.0

Q ss_pred             ccccCCCcEEEEEEeecC--CCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEcccccCCC
Q psy15667         12 QTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDG   75 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~   75 (286)
                      +...+|++|+|.|.....  ....+.|+|.  +..   |         ....|+.+..   ........|.|.+++.+|+
T Consensus         6 v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~---~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           6 LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWD---DPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             EEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEE---ETTTTEEEEEECSCCGGGC
T ss_pred             EEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeee---eCCCCEEEEEEhhhCCCCC
Confidence            467899999999986533  2335679873  211   1         1112332211   1122345699999999999


Q ss_pred             eEEEEEEEc
Q psy15667         76 GEYACVAEN   84 (286)
Q Consensus        76 G~Y~C~a~n   84 (286)
                      |.|.|....
T Consensus        83 G~Y~C~v~~   91 (108)
T d1hkfa_          83 GHYWCRIYR   91 (108)
T ss_dssp             EEEEEEEEC
T ss_pred             EEEEEEEec
Confidence            999998764

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.00  E-value=2.7e-05  Score=52.56  Aligned_cols=83  Identities=17%  Similarity=0.217  Sum_probs=48.7

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~~  240 (286)
                      +.+.+.+|++++|.|.........+.|.+..+.              ....+             -++.+...- ....+
T Consensus         7 ~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g--------------~~p~~-------------l~y~~~~~~~~~~~r   59 (108)
T d1nfde1           7 SSASVTVGETVKITCSGDQLPKNFAYWFQQKSD--------------KNILL-------------LIYMDNKRPSGIPER   59 (108)
T ss_dssp             SEEEEETTSCCCEEEEETTGGGSCCEEEEECTT--------------CCEEE-------------EEBTTTBCCTTSCTT
T ss_pred             CeeEECCCCCEEEEEECCCCCCccEEEEecccc--------------cceee-------------eccccccccccccce
Confidence            346677899999999876555556889884322              11111             111111000 01112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +..... .....|.|.+++++|+|.|.|.+.-
T Consensus        60 f~~~~~-~~~~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          60 FSGSTS-GTTATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEEE-TTEEEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeecCC-CCEeeeeEcCccccCCceEEEEeec
Confidence            332222 2356899999999999999997753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.00  E-value=9.5e-06  Score=55.30  Aligned_cols=71  Identities=20%  Similarity=0.206  Sum_probs=45.9

Q ss_pred             ccccccccCCCcEEEEEEeecCC-CCeeEEeeC--CEEcC------C------CCeeEeceEEecccceeEEEEEccccc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP-TPDIGWTLD--GFELP------T------NNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p-~p~v~W~~~--~~~l~------~------~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      .+..+.+.+|++|+|.|...+.. ...+.|++.  |+.+.      .      ..++.+    .. ......|.|.+++.
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~----~~-~~~~~~L~i~~~~~   78 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAI----AE-DRKSSTLILHRATL   78 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEE----CT-TSSEEEEEESSCCG
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceee----cc-cCCeeEEEEeeccc
Confidence            45567889999999999876543 345889983  22210      0      011111    11 12234699999999


Q ss_pred             CCCeEEEEEEE
Q psy15667         73 EDGGEYACVAE   83 (286)
Q Consensus        73 ~D~G~Y~C~a~   83 (286)
                      +|+|.|.|.+.
T Consensus        79 ~Dsa~YyCa~~   89 (112)
T d1kgcd1          79 RDAAVYYCILP   89 (112)
T ss_dssp             GGCEEEEEECC
T ss_pred             ccceeEeeeEe
Confidence            99999999653

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=8.1e-06  Score=56.20  Aligned_cols=73  Identities=30%  Similarity=0.351  Sum_probs=48.4

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEEEEcccc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      ...|..+++.+|++++|.|...+.-...+.|++.  +..   |         ....++..    ...+ ....|.|.+++
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~----~~~~-~~~~L~I~~~~   79 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSG----SGSG-TDYTLTISSLQ   79 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEE----EEEB-TEEEEEECSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecc----cCCC-CEEEEEcccCc
Confidence            3456677899999999999877654456889974  211   1         11222321    1111 22469999999


Q ss_pred             cCCCeEEEEEEE
Q psy15667         72 VEDGGEYACVAE   83 (286)
Q Consensus        72 ~~D~G~Y~C~a~   83 (286)
                      .+|+|.|.|.+.
T Consensus        80 ~~DsavYyCa~~   91 (119)
T d1f3rb2          80 PEDVATYFCYQY   91 (119)
T ss_dssp             GGGCSEEEEEEE
T ss_pred             cCCCeEEEeecc
Confidence            999999999654

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=7.3e-06  Score=55.99  Aligned_cols=70  Identities=26%  Similarity=0.430  Sum_probs=44.0

Q ss_pred             ccccCCCcEEEEEEeec--CCCCeeEEeeC--CEE---c-CC-----------CCeeEeceEEecccceeEEEEEccccc
Q psy15667         12 QTLQPGPAVSLKCIASG--NPTPDIGWTLD--GFE---L-PT-----------NNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g--~p~p~v~W~~~--~~~---l-~~-----------~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ..+.+|++|+|.|...+  .....+.|+|.  +..   | ..           ..|+.+..   .......+|+|.+++.
T Consensus         9 ~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~---~~~~~~~~Lti~~l~~   85 (113)
T d1smoa_           9 YELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILED---YHDHGLLRVRMVNLQV   85 (113)
T ss_dssp             EECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEE---ETTTTEEEEEECSCCG
T ss_pred             EEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEE---ECCCCEEEEEEccCCc
Confidence            46789999999998764  23456789973  211   1 00           01222211   1122234699999999


Q ss_pred             CCCeEEEEEEEc
Q psy15667         73 EDGGEYACVAEN   84 (286)
Q Consensus        73 ~D~G~Y~C~a~n   84 (286)
                      +|+|.|.|.+..
T Consensus        86 ~Dsg~Y~Cav~~   97 (113)
T d1smoa_          86 EDSGLYQCVIYQ   97 (113)
T ss_dssp             GGCEEEEEEECC
T ss_pred             ccCceEEEEEEC
Confidence            999999997643

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.97  E-value=1.4e-05  Score=54.28  Aligned_cols=74  Identities=20%  Similarity=0.359  Sum_probs=47.8

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEcccc
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      +|...++.+|++|+|.|...+..  ..-+.|++.  ++.+            ...+++....  . .......|.|.+++
T Consensus         6 QP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~L~i~~l~   82 (111)
T d1cd0a_           6 QPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSI--D-RSSNSASLTISGLK   82 (111)
T ss_dssp             CCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE--E-TTTTEEEEEECSCC
T ss_pred             cCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEee--c-CCCCccccccccCC
Confidence            35567899999999999887542  234889873  2221            1123333211  1 12234569999999


Q ss_pred             cCCCeEEEEEEEc
Q psy15667         72 VEDGGEYACVAEN   84 (286)
Q Consensus        72 ~~D~G~Y~C~a~n   84 (286)
                      .+|+|.|.|.+.+
T Consensus        83 ~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          83 TEDEADYYCQSYD   95 (111)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccCcEEEEeecc
Confidence            9999999996543

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=9.7e-06  Score=56.02  Aligned_cols=75  Identities=21%  Similarity=0.241  Sum_probs=46.2

Q ss_pred             ccccccccCCCcEEEEEEeecC-------CCCeeEEeeCCEE--c------C---------CCCeeEeceEEecccceeE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-------PTPDIGWTLDGFE--L------P---------TNNRFVIGQFVSGHGDVIS   63 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-------p~p~v~W~~~~~~--l------~---------~~~~~~~~~~~~~~~~~~~   63 (286)
                      .+.++++.+|++|+|.|.....       ....+.|++....  .      .         ...|+.+... ...++  .
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~--~   83 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGD-PQTKN--C   83 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSC-GGGTB--C
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeee-CcCCE--E
Confidence            3566789999999999986421       1135779875321  1      0         0123322111 01122  3


Q ss_pred             EEEEcccccCCCeEEEEEEEcC
Q psy15667         64 HVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        64 ~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      +|.|.+++.+|+|.|.|.+...
T Consensus        84 sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          84 TLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEECCCChHHCEEEEEEEEeC
Confidence            5999999999999999988653

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=97.96  E-value=1.7e-05  Score=53.75  Aligned_cols=85  Identities=16%  Similarity=0.198  Sum_probs=48.3

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.....-...+.|.+..+.              ....+.-.....           ...- ...++.
T Consensus         9 ~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg--------------~~p~~l~~~~~~-----------~~~~-~~~~f~   62 (110)
T d1ac6a_           9 QVALSEEDFLTIHCNYSASGYPALFWYVQYPG--------------EGPQFLFRASRD-----------KEKG-SSRGFE   62 (110)
T ss_dssp             EEEEETTEEEEECEEEECSSCCEEEEEEECTT--------------SCCEEEEEECST-----------TCEE-EETTEE
T ss_pred             eEEECCCCCEEEEEEecCCCCcceEEEEcCCC--------------CceEEeeeeeee-----------cccC-CCCcee
Confidence            46677999999999877655567889884321              111111111000           0000 001111


Q ss_pred             eeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        243 VSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       243 ~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .... ......|.|.++.++|+|.|.|.+...
T Consensus        63 ~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~   94 (110)
T d1ac6a_          63 ATYNKEATSFHLQKASVQESDSAVYYCALSGG   94 (110)
T ss_dssp             EECBTTTTBCCEEEEEECGGGCEEEEEEEEET
T ss_pred             eeecCCCCEEeeeecCcCcCCCcccceeecCC
Confidence            1111 122457899999999999999987654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.96  E-value=1e-05  Score=55.07  Aligned_cols=71  Identities=20%  Similarity=0.382  Sum_probs=46.3

Q ss_pred             cccccccCCCcEEEEEEeecC---CCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEcccc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGN---PTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~---p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      |...++.+|++|+|.|...+.   ....+.|++.  |+.+            ....++...    ... ....|.|.+++
T Consensus         7 P~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~----~~~-~~~~L~I~~l~   81 (112)
T d1lgva1           7 PASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGS----KSG-NSASLTISGLQ   81 (112)
T ss_dssp             CSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE----EET-TEEEEEECSCC
T ss_pred             CCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEE----CCC-CEeeEEeCcCc
Confidence            566789999999999987653   2235889973  2211            011222221    111 23469999999


Q ss_pred             cCCCeEEEEEEEc
Q psy15667         72 VEDGGEYACVAEN   84 (286)
Q Consensus        72 ~~D~G~Y~C~a~n   84 (286)
                      .+|+|.|.|.+.+
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1lgva1          82 AEDEADYYCSSYD   94 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccCEEEEEeeec
Confidence            9999999997654

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=97.94  E-value=5.3e-06  Score=56.22  Aligned_cols=70  Identities=20%  Similarity=0.352  Sum_probs=46.0

Q ss_pred             cccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-C--------CCCeeEeceEEecccceeEEEEEcccccCC
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-P--------TNNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      ++..++.+|++|+|.|.........+.|++.  |+.   | .        ...++..    ... +....|.|.+++.+|
T Consensus         7 p~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~----~~~-~~~~~L~I~~l~~~D   81 (109)
T d1w72l1           7 PPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSG----SNS-GNMATLTISRVEAGD   81 (109)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEE----EEE-TTEEEEEESSCCGGG
T ss_pred             CCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEee----ecC-CCccceEEeeeccCC
Confidence            4467789999999999866544456889963  221   1 0        1122221    111 223469999999999


Q ss_pred             CeEEEEEEE
Q psy15667         75 GGEYACVAE   83 (286)
Q Consensus        75 ~G~Y~C~a~   83 (286)
                      +|.|.|.+.
T Consensus        82 savYyCA~~   90 (109)
T d1w72l1          82 EADYYCQVW   90 (109)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEec
Confidence            999999754

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.94  E-value=1.5e-05  Score=54.99  Aligned_cols=76  Identities=16%  Similarity=0.185  Sum_probs=47.4

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE---c---CC----------CCeeEeceEEecccceeEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE---L---PT----------NNRFVIGQFVSGHGDVISH   64 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~---l---~~----------~~~~~~~~~~~~~~~~~~~   64 (286)
                      +...+..+++.+|++++|.|.+.+..  ...+.|++.  |+.   |   ..          ..|+..+.   ........
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~---~~~~~~~~   80 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASK---NPSASTSI   80 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEE---CCTTTEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeecccccccccc---cccccccc
Confidence            44455567788999999999876532  345889973  221   1   01          11222111   01122345


Q ss_pred             EEEcccccCCCeEEEEEEE
Q psy15667         65 VNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |+|.+++.+|+|.|.|.+.
T Consensus        81 L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          81 LTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             EEECSCCGGGCSEEEEEEC
T ss_pred             ccccccccccceeEEEEEc
Confidence            9999999999999999543

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.93  E-value=4.3e-05  Score=50.26  Aligned_cols=76  Identities=21%  Similarity=0.254  Sum_probs=48.9

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+...+ ..+|..|++|+|.|... .....+.++|+|..-..  .....+. . .+.....+.|.+++.+|+|.|+|..
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~--~~~~~~~-~-~~~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDT--LRLIGEH-H-DGVSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEE--EEEECEE-E-TTEEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCc--eeeeeee-c-CCceEEEEEEcccCcccCeEEEEEE
Confidence            5555444 67899999999999865 34456788888743110  0001010 0 1112235899999999999999976


Q ss_pred             Ec
Q psy15667         83 EN   84 (286)
Q Consensus        83 ~n   84 (286)
                      ..
T Consensus        77 ~~   78 (96)
T d1nkra1          77 SV   78 (96)
T ss_dssp             EB
T ss_pred             Ec
Confidence            54

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=97.92  E-value=1.6e-05  Score=54.01  Aligned_cols=73  Identities=32%  Similarity=0.439  Sum_probs=47.4

Q ss_pred             eEeccccccccCCCcEEEEEEeecCC-----CCeeEEeeC--CEE---c---------CCCCeeEeceEEecccceeEEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGNP-----TPDIGWTLD--GFE---L---------PTNNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~p-----~p~v~W~~~--~~~---l---------~~~~~~~~~~~~~~~~~~~~~l   65 (286)
                      +...|..+++.+|++|+|.|...+..     ..-+.|++.  |+.   |         ....++..    ...+. ...|
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~----~~~~~-~~~L   78 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTG----SGSGT-DFTL   78 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEE----EEETT-EEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEe----eCCCC-EEEE
Confidence            44567788899999999999865432     234779863  221   1         01223321    11222 2469


Q ss_pred             EEcccccCCCeEEEEEE
Q psy15667         66 NISHVTVEDGGEYACVA   82 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a   82 (286)
                      .|.+++.+|+|.|.|..
T Consensus        79 ~I~~~~~eDsAvYYC~~   95 (112)
T d1ncwl1          79 KISRVEAEDLGVYYCWQ   95 (112)
T ss_dssp             EESSCCGGGCEEEEEEE
T ss_pred             EECccccCcCEeEEEEc
Confidence            99999999999999954

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.92  E-value=7e-05  Score=50.55  Aligned_cols=84  Identities=13%  Similarity=0.181  Sum_probs=48.7

Q ss_pred             CceEEecCCCEEEEeeEeeecC---CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPI---EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP  237 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~---~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~  237 (286)
                      +.+.+.+|++++|.|...+...   ..+.|.+..|.              ....+.-             +.....- ..
T Consensus         8 ~slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg--------------~~p~~l~-------------y~~~~~~~~~   60 (110)
T d1oaql_           8 SALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPD--------------HLFTGLI-------------GGTNNRAPGV   60 (110)
T ss_dssp             SEEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETT--------------TEEEEEE-------------ETTTEECTTS
T ss_pred             CCEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecc--------------cceeeee-------------eeeceecccc
Confidence            4566778999999999865332   23889874321              1111110             0111110 01


Q ss_pred             CCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        238 RFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       238 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..++..... .....|.|.++..+|+|.|.|.+...
T Consensus        61 ~~rf~~s~~-~~~~~L~I~~~~~~Dsa~YyCa~~~~   95 (110)
T d1oaql_          61 PARFSGSLI-GNKAALTITGAQTEDEAIYFCALWYS   95 (110)
T ss_dssp             CTTEEEEEE-TTEEEEEEESCCGGGCEEEEEEEEET
T ss_pred             ceeeeeccc-ccceeeecCCCCccccEeEEEEcccC
Confidence            123333322 34568999999999999999987653

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.92  E-value=1e-05  Score=55.18  Aligned_cols=75  Identities=27%  Similarity=0.392  Sum_probs=49.0

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c---C---------CCCeeEeceEEecccceeEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L---P---------TNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l---~---------~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+...|...++.+|++++|.|..... ...+.|++.  |+.   |   .         ...++..+.    ..+....|+
T Consensus         3 ~VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~   77 (113)
T d1nfdb1           3 GVVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQ----FDDYHSEMN   77 (113)
T ss_dssp             SCEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEE----CTTSCEEEE
T ss_pred             CEEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEc----CCCCeEEEE
Confidence            45667788899999999999986543 356889974  221   1   0         112222110    112224699


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+|.|.|.+.
T Consensus        78 I~~~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          78 MSALELEDSAMYFCASS   94 (113)
T ss_dssp             CCSCCGGGCEEECEEEE
T ss_pred             ecccCcCCceeEEEEee
Confidence            99999999999999654

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.92  E-value=1.9e-05  Score=51.67  Aligned_cols=60  Identities=20%  Similarity=0.431  Sum_probs=38.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      |..|+.+.|.|..  ......+.|+|+|.....    .. ........+.|.+|+.+|+|.|+|...
T Consensus        15 V~~G~~VTL~C~~--~~~~~~f~L~Keg~~~~~----~~-~~~~~~a~F~i~~v~~~~~G~Y~C~~~   74 (93)
T d1olla2          15 VISGEKVTFYCRL--DTATSMFLLLKEGRSSHV----QR-GYGKVQAEFPLGPVTTAHRGTYRCFGS   74 (93)
T ss_dssp             EETTCEEEEEEEC--SSSCSEEEEEEESSSCEE----EE-EECSSEEEEEEEECCGGGCEEEEEECE
T ss_pred             ccCCCcEEEEECC--CCCCCEEEEEECCCccce----ee-cCCCceeEEEecccChhcCceEEEEeE
Confidence            4456666666653  234567788888763311    11 111234578899999999999999743

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=8.3e-06  Score=55.78  Aligned_cols=77  Identities=21%  Similarity=0.212  Sum_probs=46.5

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------CCCCeeEe-----ceEEecccceeEEEEEccccc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------PTNNRFVI-----GQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~~~~~~~~-----~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ...|..+++.+|++|+|.|... .....+.|++.  |+.+      ........     ........+....|.|.++..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            3456677899999999999865 34457889973  2211      01000000     000001112223599999999


Q ss_pred             CCCeEEEEEEE
Q psy15667         73 EDGGEYACVAE   83 (286)
Q Consensus        73 ~D~G~Y~C~a~   83 (286)
                      +|+|.|.|.+.
T Consensus        82 ~DSa~YyCa~~   92 (114)
T d1ogae1          82 NPTAFYLCASS   92 (114)
T ss_dssp             CCCEEEEEEEE
T ss_pred             CCceeEEEeec
Confidence            99999999554

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.91  E-value=2.4e-05  Score=52.69  Aligned_cols=83  Identities=13%  Similarity=0.209  Sum_probs=47.7

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCee-CCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSPRFP  240 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~-~~~~~~  240 (286)
                      +.+++.+|++++|.|.........+.|.+..+.              +...+.-             +..... .....+
T Consensus         9 ~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g--------------~~~~~l~-------------~~~~~~~~~~~~~   61 (107)
T d3cx5k1           9 VSLAASLGDRVTISCRASQDINNFLNWYQQKPD--------------GTIKLLI-------------YYTSRLHAGVPSR   61 (107)
T ss_dssp             TTCCBCSSSCCEEEEEESSCCTTCEEEEEECTT--------------SCEEEEE-------------ETTTEECTTCCTT
T ss_pred             CEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCC--------------CcceEEE-------------EeecccCCCcCCC
Confidence            345667899999999877666667889874322              1111111             000000 000111


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.... ......|.|.+++++|+|.|.|.+..
T Consensus        62 f~~~~-~~~~~~L~I~~~~~~Dsa~YyCa~~~   92 (107)
T d3cx5k1          62 FSGSG-SGTDYSLTISNLEPEDIATYFCQHHI   92 (107)
T ss_dssp             CCCEE-ETTEEEEECSCCCSCCCSEEEEEECS
T ss_pred             EEEEc-cCCEEEEEEeEeeecCCCcEEeeeCC
Confidence            11111 12356899999999999999997653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.91  E-value=1.1e-05  Score=54.97  Aligned_cols=76  Identities=16%  Similarity=0.248  Sum_probs=48.4

Q ss_pred             eeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------CC---------CCeeEeceEEecccceeEEEE
Q psy15667          4 ILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------PT---------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         4 ~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~~---------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .+...|..+++.+|++++|.|.... -...+.|++.  |..+      ..         ..++..    ....+....|.
T Consensus         2 ~V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~L~   76 (113)
T d1j8he1           2 KVTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSV----SREKKERFSLI   76 (113)
T ss_dssp             CEEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEE----ECSSTTBCEEE
T ss_pred             EEEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceE----EeccCcEeeeE
Confidence            3556677788999999999997543 2456889973  2211      00         011111    11112223589


Q ss_pred             EcccccCCCeEEEEEEEc
Q psy15667         67 ISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n   84 (286)
                      |.+++.+|+|.|.|.+..
T Consensus        77 i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          77 LESASTNQTSMYLCASSS   94 (113)
T ss_dssp             ESSCCGGGCEEEEEEEEC
T ss_pred             eccCccCCcccEEeeEcc
Confidence            999999999999997643

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.91  E-value=7.6e-06  Score=55.36  Aligned_cols=71  Identities=21%  Similarity=0.323  Sum_probs=47.0

Q ss_pred             ccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEE---c-C--------CCCeeEeceEEecccceeEEEEEcccccC
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFE---L-P--------TNNRFVIGQFVSGHGDVISHVNISHVTVE   73 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~---l-~--------~~~~~~~~~~~~~~~~~~~~l~I~~~~~~   73 (286)
                      +|....+.+|++|+|.|.........+.|++.  |+.   | .        ...|+..+    ..+ ....|.|.+++.+
T Consensus         5 QP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~----~~~-~~~~L~I~~l~~~   79 (108)
T d1nfde1           5 QPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGS----TSG-TTATLTISGAQPE   79 (108)
T ss_dssp             CCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEE----EET-TEEEEEETTCCGG
T ss_pred             CCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeec----CCC-CEeeeeEcCcccc
Confidence            35667889999999999876544446889973  321   1 0        11234321    112 2346899999999


Q ss_pred             CCeEEEEEEE
Q psy15667         74 DGGEYACVAE   83 (286)
Q Consensus        74 D~G~Y~C~a~   83 (286)
                      |+|.|.|.+.
T Consensus        80 Dsa~YyCA~~   89 (108)
T d1nfde1          80 DEAAYYCLSS   89 (108)
T ss_dssp             GCSEEEEEEE
T ss_pred             CCceEEEEee
Confidence            9999999754

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=97.91  E-value=1.6e-05  Score=54.26  Aligned_cols=74  Identities=24%  Similarity=0.377  Sum_probs=47.8

Q ss_pred             eEeccccccccCCCcEEEEEEeecC------CCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEE
Q psy15667          5 LTYSFIEQTLQPGPAVSLKCIASGN------PTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISH   64 (286)
Q Consensus         5 ~~~~~~~~~~~~G~~~~l~C~~~g~------p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~   64 (286)
                      +...|..+++.+|++++|.|...+.      ....+.|++.  |..+            ....++..    ...+ ....
T Consensus         4 ~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~----~~s~-~~~~   78 (113)
T d1q9ra1           4 MSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTG----SGSG-TDFT   78 (113)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEE----EEET-TEEE
T ss_pred             EEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEE----eCCC-CeEe
Confidence            4556778889999999999976532      1134889973  2211            11223322    1112 2346


Q ss_pred             EEEcccccCCCeEEEEEEE
Q psy15667         65 VNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |.|.+++.+|+|.|.|.+.
T Consensus        79 L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          79 LTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEESSCCGGGCEEEEEEEC
T ss_pred             EEecccccCCCeEEEeccc
Confidence            9999999999999999643

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.2e-05  Score=52.11  Aligned_cols=23  Identities=22%  Similarity=0.466  Sum_probs=20.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...|.|.++.++|+|.|.|.+..
T Consensus        76 ~~~L~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          76 TFVLTLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ChhcEEccCCCCCCEEEeEeEcC
Confidence            55799999999999999998764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.90  E-value=4.8e-05  Score=50.00  Aligned_cols=63  Identities=21%  Similarity=0.298  Sum_probs=40.0

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +..|+.+.|.|... ......+.|+|+|......  ..  . ........|.+++.+|+|.|.|.....
T Consensus        16 V~~G~~VTL~C~~~-~~~~~~f~L~k~g~~~~~~--~~--~-~~~~a~F~l~~v~~~~~G~Y~C~y~~~   78 (96)
T d1ucta2          16 LMPGENISLTCSSA-HIPFDRFSLAKEGELSLPQ--HQ--S-GEHPANFSLGPVDLNVSGIYRCYGWYN   78 (96)
T ss_dssp             ECTTCCCEEEEECS-SSCCSEEEEEETTCSSCCS--EE--E-CSSSEEEECCSCCGGGCEEEEEEEECT
T ss_pred             cCCCCeEEEEEeCC-CCCceEEEEEECCcccceE--Ec--C-CCcccEEEEeccccccCcEEEEEEEcC
Confidence            55666666666531 1123467899998643221  11  1 122356789999999999999987653

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.90  E-value=3.2e-06  Score=55.99  Aligned_cols=27  Identities=33%  Similarity=0.481  Sum_probs=22.5

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ...|.|.+++++|+|.|.|.+....|.
T Consensus        63 ~~~L~I~~~~~~Dsa~YyCA~~~~~g~   89 (96)
T d1ymmd1          63 SSSLLITASRAADTASYFCATDTTSGT   89 (96)
T ss_dssp             BCCBCCSSCCSTTCSCCEEEEEETTSC
T ss_pred             ecccCcCCCCcccCEEEeEeEecCCCC
Confidence            347999999999999999988766553

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=97.90  E-value=0.00011  Score=49.91  Aligned_cols=83  Identities=19%  Similarity=0.322  Sum_probs=48.2

Q ss_pred             CceEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSPR  238 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~~  238 (286)
                      +.+.+.+|++++|.|.+.+.-  ...+.|.+..+.-.                           +.+-.+.+.. .-...
T Consensus         8 ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~---------------------------~~~l~~~~~~~~~~~~   60 (114)
T d2rhea_           8 PSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKA---------------------------PKLLIYYNDLLPSGVS   60 (114)
T ss_dssp             SEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSC---------------------------CEEEEBTTTBCCTTCC
T ss_pred             CcEEeCCCCCEEEEEEECCccccCCcccceeeecccc---------------------------eEEEEEEeeeeccCCC
Confidence            346677899999999876643  45688987432211                           0100011110 00111


Q ss_pred             CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++.... ......|.|.+++.+|++.|.|.+..
T Consensus        61 ~~~~~~~-~~~~~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          61 DRFSASK-SGTSASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             TTEEEEE-ETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             CcceecC-CCCeeeeEecccCcccCceEEEeecC
Confidence            1222222 23356899999999999999998764

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=2.2e-05  Score=52.39  Aligned_cols=85  Identities=14%  Similarity=0.237  Sum_probs=53.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+.+....-..++.++|.|.+.|. |. ..|+|.+||+.+..+..... .....++.  ..+.|+|..-.......
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~-~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1q0xl2           5 SPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQ-PSKQSNNKYMASSYLTLTARAWERHSS   83 (102)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECC-CEECTTSCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhCCCeEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecc-cEEcCCCCEEEEEEEEECHHHhCCCCE
Confidence            6777766555544456789999999985 43 47999999998754321110 11112222  23447777666666779


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|.+.....
T Consensus        84 ytC~V~H~~~   93 (102)
T d1q0xl2          84 YSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEETTE
T ss_pred             EEEEEEECCc
Confidence            9999986543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.88  E-value=3.8e-06  Score=55.59  Aligned_cols=74  Identities=20%  Similarity=0.274  Sum_probs=47.6

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEE
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVA   82 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a   82 (286)
                      |.+...+ ..+|..|++|+|.|... .+.-.+..+|+|..-....+..     ...++ ...+.|.+++.+|+|.|+|..
T Consensus         5 P~Lsa~P-s~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~-----~~~~~-~a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           5 PTLWAEP-GSVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIP-----QELVK-KGQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSC-----HHHHT-TTEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeEC-CCccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEcc-----CCCCC-EEEEEEEecCHHHCCeEEEEE
Confidence            5565444 47789999999999864 4455677788875321000000     00011 124889999999999999986


Q ss_pred             Ec
Q psy15667         83 EN   84 (286)
Q Consensus        83 ~n   84 (286)
                      ..
T Consensus        77 ~~   78 (96)
T d1ugna1          77 GS   78 (96)
T ss_dssp             EE
T ss_pred             eC
Confidence            43

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.87  E-value=7.2e-05  Score=50.72  Aligned_cols=83  Identities=13%  Similarity=0.229  Sum_probs=46.5

Q ss_pred             ceEEecCCCEEEEeeEeeec-CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        163 KVTAIDGEGLSIKCPVAGYP-IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p-~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      .+.+.+|++++|.|...+.. ...+.|.+..+.              ....+            +.+......-....+.
T Consensus         7 ~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg--------------~~~~~------------i~~~~~~~~~~~~~~~   60 (112)
T d1kgcd1           7 SMESNEEEPVHLPCNHSTISGTDYIHWYRQLPS--------------QGPEY------------VIHGLTSNVNNRMASL   60 (112)
T ss_dssp             EEEEETTSCEEEEEEESCCCTTCCEEEEEECTT--------------SCCEE------------EEEESSSSEECSSEEE
T ss_pred             EEEECCCCCEEEEEEEeCCCccccEEEEEECCC--------------CCcce------------eeeecceeccccccce
Confidence            45677999999999987644 345889884322              11111            1111000000000111


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .+. .......|.|.++..+|+|.|.|.+..
T Consensus        61 ~~~-~~~~~~~L~i~~~~~~Dsa~YyCa~~~   90 (112)
T d1kgcd1          61 AIA-EDRKSSTLILHRATLRDAAVYYCILPL   90 (112)
T ss_dssp             EEC-TTSSEEEEEESSCCGGGCEEEEEECCC
T ss_pred             eec-ccCCeeEEEEeecccccceeEeeeEec
Confidence            111 122345799999999999999997643

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.86  E-value=0.00015  Score=47.52  Aligned_cols=71  Identities=20%  Similarity=0.395  Sum_probs=45.8

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecC-C---CeeeEEEcccCCCCCeEEEEEEEecccceeeE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLD-S---FSSLLSINSVSAAHSGEYTCVASNTAAQARYS  280 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~  280 (286)
                      .++...|.|.+....|.+.|.|+++|..+............ +   ....|.|   ...+...|+|.+....-.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~~~~~~~~~~~~~~~g~y~v~S~L~v---~~~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEELNAINTTVSQDPETELYAVSSKLDF---NMTTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCEECCSEEEEEECTTTCCEEEEEEEEE---ETTSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcEecccceeeEecCCCccEEEEEEEEc---cCCccceEEEEEEecCCCCcEE
Confidence            46778899988877888899999999877543322211111 1   1234444   4557789999999876544433

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.85  E-value=6.1e-05  Score=48.98  Aligned_cols=75  Identities=19%  Similarity=0.299  Sum_probs=45.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+....   ..++.++|.|.+.|. |. -.|+|.+||..+..+ ....  ....++..  .+.|.|   ..+|...
T Consensus         3 PP~V~v~~~~---~~~~~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~-~~~~--~~~~dgty~~~S~l~v---~~~~~~~   73 (91)
T d3frua1           3 PPSMRLKARP---GNSGSSVLTCAAFSFYPPELKFRFLRNGLASGSG-NCST--GPNGDGSFHAWSLLEV---KRGDEHH   73 (91)
T ss_dssp             CCEEEEEEEE---CSTTEEEEEEEEEEEBSSCCEEEEEETTEECCCC-EEEE--EECSSSCEEEEEEEEE---ETTCGGG
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEeEECCCCEEEEEECCEeCCcc-Cccc--eecCCCCEeEEEEEEE---CCCCCCE
Confidence            7887753322   345689999999994 54 489999999887543 2221  11222221  223444   4456678


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|++.-.
T Consensus        74 ytC~V~H~   81 (91)
T d3frua1          74 YQCQVEHE   81 (91)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99988753

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.85  E-value=1.3e-05  Score=54.51  Aligned_cols=73  Identities=18%  Similarity=0.300  Sum_probs=46.3

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------C---------CCCeeEeceEEecccceeEEEEEc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------P---------TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~---------~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...|...++.+|++++|.|..... ...+.|++.  |+.+      .         ...++...+    .......|.|.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~I~   77 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSR----STTEDFPLRLL   77 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECC----SSSSBCCEEES
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEec----CCCCEEEEEEC
Confidence            445666789999999999986543 456899973  2211      0         011111111    11112359999


Q ss_pred             ccccCCCeEEEEEEE
Q psy15667         69 HVTVEDGGEYACVAE   83 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~   83 (286)
                      ++..+|+|.|.|.+.
T Consensus        78 ~~~~~DsavYyCA~~   92 (112)
T d2bnub1          78 SAAPSQTSVYFCASS   92 (112)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             CCCHHHCEEEEEeec
Confidence            999999999999654

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=97.85  E-value=9.2e-07  Score=58.71  Aligned_cols=69  Identities=17%  Similarity=0.367  Sum_probs=44.4

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------------CCCCeeEeceEEecccceeEEEEEcccccCCCeE
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------------PTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGE   77 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~   77 (286)
                      .+|++|++|+|.|.... ....+.|++.  |+.+            ....|+....  . .......|.|.+++.+|+|.
T Consensus         3 lsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~--~-~~~~~~~L~I~~~~~~Dsa~   78 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTL--D-TSKKSSSLLITASRAADTAS   78 (96)
T ss_dssp             CCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCC--B-GGGTBCCBCCSSCCSTTCSC
T ss_pred             ceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeec--c-CcceecccCcCCCCcccCEE
Confidence            57899999999997654 3457889873  3221            1123332211  0 11112358999999999999


Q ss_pred             EEEEEEc
Q psy15667         78 YACVAEN   84 (286)
Q Consensus        78 Y~C~a~n   84 (286)
                      |.|.+..
T Consensus        79 YyCA~~~   85 (96)
T d1ymmd1          79 YFCATDT   85 (96)
T ss_dssp             CEEEEEE
T ss_pred             EeEeEec
Confidence            9997654

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.83  E-value=0.0001  Score=49.90  Aligned_cols=25  Identities=24%  Similarity=0.507  Sum_probs=21.4

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ...|.|.+++++|+|.|.|.+.+..
T Consensus        72 ~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          72 SASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EeeEEeCcCccccCEEEEEeeecCC
Confidence            5689999999999999999876543

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.83  E-value=6.8e-05  Score=49.57  Aligned_cols=65  Identities=17%  Similarity=0.248  Sum_probs=40.7

Q ss_pred             CCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        204 GLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       204 ~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .+..|+.+.|.|...  .....+.|+|+|........  ............|..+...|+|.|.|....
T Consensus        16 ~V~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~--~~~~~~~~~~f~~~~~~~~~~G~Y~C~y~~   80 (99)
T d1nkra2          16 TVLAGENVTLSCSSR--SSYDMYHLSREGEAHERRLP--AGPKVNGTFQADFPLGPATHGGTYRCFGSF   80 (99)
T ss_dssp             EECTTCEEEEEEEES--SCCSEEEEEETTCSSCEEEE--CEEEETTEEEEEEEEEECCSCEEEEEEEEE
T ss_pred             cccCCCeEEEEECCC--CCccEEEEEECCCccccEEE--ccccCCccEEEEEeccccccCEEEEEEeec
Confidence            355677777777643  45567889999864422110  011112234567888999999999997654

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.82  E-value=4.3e-05  Score=51.84  Aligned_cols=68  Identities=25%  Similarity=0.369  Sum_probs=45.7

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      -.++++|+++.|.|.+.|...  -.+.|++.  |+.|      ..          ..|+.++..   .......|.|.++
T Consensus         9 ~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D---~s~nt~~L~i~~l   85 (120)
T d1dn0b1           9 AGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVD---TSKNQFSLKLSSV   85 (120)
T ss_dssp             CCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEecc---Cchheeccccccc
Confidence            357899999999999998643  35678863  3222      11          235554321   1222345999999


Q ss_pred             ccCCCeEEEEE
Q psy15667         71 TVEDGGEYACV   81 (286)
Q Consensus        71 ~~~D~G~Y~C~   81 (286)
                      +.+|++.|.|.
T Consensus        86 ~~eDtA~YYCA   96 (120)
T d1dn0b1          86 TAADTAVYYCA   96 (120)
T ss_dssp             CGGGCEEEEEE
T ss_pred             ccccccEEEEE
Confidence            99999999993

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=5e-05  Score=51.97  Aligned_cols=71  Identities=17%  Similarity=0.105  Sum_probs=44.0

Q ss_pred             cccccccCCCcEEEEEEeecCC-CC--eeEEeeC--CEEc------C--------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNP-TP--DIGWTLD--GFEL------P--------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p-~p--~v~W~~~--~~~l------~--------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      +....+.+|++|+|.|.....- ..  .+.|++.  |+.+      .        .+.++...   .... ....|.|.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~-~~~~L~I~~   81 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSG---TFNE-SRVNLTIQG   81 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEE---EEET-TEEEEEECS
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEE---eCCC-CEEEEEhhc
Confidence            5556789999999999875432 22  3779973  2211      0        11111111   1111 234699999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+|.|.|.+.
T Consensus        82 l~~~Dsa~YyCa~~   95 (117)
T d1dqta_          82 LRAVDTGLYLCKVE   95 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CccccCEeEEEEEe
Confidence            99999999999764

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.82  E-value=5.5e-05  Score=48.97  Aligned_cols=77  Identities=22%  Similarity=0.400  Sum_probs=45.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+..   ....++.++|.|.+.|..+  -.|+|.+||+.+..+... ......+++..  ...|.|.   ..|...
T Consensus         3 pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~-~~~~~~~~gt~~~~s~l~v~---~~~~~~   75 (89)
T d2mhaa1           3 SPKAHVTH---HSRPEDKVTLRCWALGFYPADITLTWQLNGEELIQDMEL-VETRPAGDGTFQKWASVVVP---LGKEQY   75 (89)
T ss_dssp             CCEEEECC---EESCSSEEEEEEEEESCBSSCCEEEEEETTEEECTTCEE-CCCEECSSSCEEEEEEEEEE---SSTTTT
T ss_pred             CCEeEEEc---cCCCCCCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEE-CcEecCCCCcEEEEEEEEec---CcCCCE
Confidence            67776533   2245678999999999533  367999999988654322 11112223322  2234443   344557


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        76 ytC~V~H~   83 (89)
T d2mhaa1          76 YTCHVYHQ   83 (89)
T ss_dssp             CEEEEECS
T ss_pred             EEEEEEEC
Confidence            99988643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.81  E-value=9.5e-05  Score=48.65  Aligned_cols=81  Identities=19%  Similarity=0.202  Sum_probs=44.1

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      +|.+.+.+.. ....|+..+|.|.+.|. | .-.|+|.+||+++..+... ......+ ++.......-.+...+...|+
T Consensus         2 ~P~V~v~p~~-~~~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~-~~~~~~~-dgty~~~s~l~v~~~~~~~yt   78 (97)
T d1uvqb1           2 EPTVTISPSR-TEALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVS-TPLIRNG-DWTFQILVMLEMTPQRGDVYT   78 (97)
T ss_dssp             CCEEEEEEC---------CEEEEEEEEEBSSCCEEEEEETTEEECTTEEE-CCCEECS-SSCEEEEEEEECCSCTTCCEE
T ss_pred             CCEEEEecCC-cccCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEe-ceeecCC-CceEEEEEEeccCCCCCCEEE
Confidence            5777654433 34557788999999985 3 3589999999887643221 1111112 222222223345566777999


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |.+.-.
T Consensus        79 C~V~H~   84 (97)
T d1uvqb1          79 CHVEHP   84 (97)
T ss_dssp             EEEECT
T ss_pred             EEEEeC
Confidence            988764

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.81  E-value=1.7e-05  Score=54.15  Aligned_cols=75  Identities=20%  Similarity=0.149  Sum_probs=45.8

Q ss_pred             ccccccccCCCcEEEEEEeec---CC---CCeeEEeeCCE----Ec-----------CCCCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASG---NP---TPDIGWTLDGF----EL-----------PTNNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g---~p---~p~v~W~~~~~----~l-----------~~~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .|.++.+.+|+.|+|.|....   .+   .-.+.|++...    .+           ....|+..... ...++  .+|.
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~--~sL~   82 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGN-MDHKV--CNLL   82 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSC-GGGTB--CCEE
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEe-CcCCE--EEEE
Confidence            466778999999999998652   11   12345766321    11           11223322111 11122  3599


Q ss_pred             EcccccCCCeEEEEEEEcC
Q psy15667         67 ISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~n~   85 (286)
                      |.+++.+|+|.|.|.++..
T Consensus        83 I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          83 LKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             ECSCCGGGCEEEEEEEECC
T ss_pred             ECCCChhHCEEEEEEEEeC
Confidence            9999999999999988653

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.81  E-value=3e-05  Score=52.86  Aligned_cols=69  Identities=20%  Similarity=0.419  Sum_probs=44.7

Q ss_pred             cccccCCCcEEEEEEeecC----CCCeeEEeeC--CEEc------C----------CCCeeEeceEEecccceeEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCIASGN----PTPDIGWTLD--GFEL------P----------TNNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~----p~p~v~W~~~--~~~l------~----------~~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      -.++++|++|+|.|.+.|.    +...+.|++.  |+.+      .          -..|+.++.   ........|.|.
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~---d~s~~~~~L~i~   85 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITK---DASKKQVVLTLT   85 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEEC---CTTTTEEEEEEE
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceec---ccccceeeeeEE
Confidence            3568999999999998763    3345779974  2221      0          023443321   011223469999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|+++|.|..
T Consensus        86 ~l~~eDsAvYyCAr   99 (120)
T d2agjh1          86 NLDPVDTATYYCAR   99 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             eeeeccceEEeeEe
Confidence            99999999999953

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.80  E-value=4.5e-05  Score=51.67  Aligned_cols=69  Identities=26%  Similarity=0.446  Sum_probs=45.6

Q ss_pred             ccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcccc
Q psy15667         12 QTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .++++|+++.|.|.+.|...  ..+.|+|.  |+.|      ..          ..|+.++..   .......|.|.+++
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D---~s~~~~~L~i~~L~   85 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQG---NAKNTAYLQMDSLK   85 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEEC---SSTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecc---cCCcceecccccCC
Confidence            57899999999999998543  34668764  2211      11          124444321   12223469999999


Q ss_pred             cCCCeEEEEEEE
Q psy15667         72 VEDGGEYACVAE   83 (286)
Q Consensus        72 ~~D~G~Y~C~a~   83 (286)
                      .+|++.|.|...
T Consensus        86 ~eDtA~YYCAr~   97 (119)
T d1kxvc_          86 PDDTAMYYCKPS   97 (119)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCcceEeeeec
Confidence            999999999543

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=0.00014  Score=48.85  Aligned_cols=36  Identities=22%  Similarity=0.423  Sum_probs=26.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecc--cc---eeeEEEEEE
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTA--AQ---ARYSSKLQV  285 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~--g~---~~~~~~L~V  285 (286)
                      ...|.|.+++.+|+|.|.|......  |.   ....+.|.|
T Consensus        68 ~~sL~I~~v~~~D~G~Y~C~V~~~~~~~~~~~~~~~~~L~V  108 (110)
T d1ncna_          68 SWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSV  108 (110)
T ss_dssp             TTEEEECSCCGGGCEEEEEEEEEECSSSEEEEEEEEEEEEE
T ss_pred             eEEEEECCCChhHCEEEEEEEEecCCCceEEEEcceEEEEE
Confidence            4579999999999999999976443  32   244566665

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=6.9e-05  Score=46.02  Aligned_cols=57  Identities=25%  Similarity=0.453  Sum_probs=35.5

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      |.+..|.|........ .--.|.|+|+.+.++..-      .....+.|..  .+|+|.|.|.=.+
T Consensus        12 ~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~------~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          12 GSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP------GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             TTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC------CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             CCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC------CCceEEEEec--CCCCceEEEEEcC
Confidence            3444555554433332 345799999999765322      2244667765  7789999998443

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.78  E-value=5.5e-05  Score=50.87  Aligned_cols=69  Identities=25%  Similarity=0.482  Sum_probs=46.3

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      ..++++|++++|+|.+.|...  -.+.|.+.  |+.|      ..          ..|+.++..   .......|.|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D---~s~n~~~L~~~sL   85 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRD---TSKSQVFLKMNSL   85 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEE---TTTTEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecc---cccceeecccccc
Confidence            457899999999999998543  35778763  3322      11          235544321   1222345999999


Q ss_pred             ccCCCeEEEEEE
Q psy15667         71 TVEDGGEYACVA   82 (286)
Q Consensus        71 ~~~D~G~Y~C~a   82 (286)
                      +.+|+++|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (117)
T d1c5db1          86 QTEDTAIYFCTR   97 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEec
Confidence            999999999953

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.78  E-value=4.4e-05  Score=50.21  Aligned_cols=67  Identities=13%  Similarity=0.080  Sum_probs=37.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +..|+.+.|.|...  .....+.++|+|......................|.+|+.+|+|.|.|.-...
T Consensus        13 V~~G~~VTl~C~~~--~~~~~f~L~keg~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   79 (96)
T d1nkra1          13 VKSEETVILQCWSD--VMFEHFLLHREGMFNDTLRLIGEHHDGVSKANFSISRMTQDLAGTYRCYGSVT   79 (96)
T ss_dssp             EETTCCEEEEEEES--SCCSEEEEEEESSSCEEEEEECEEETTEEEEEEEESSCCGGGCEEEEEEEEBT
T ss_pred             cCCCCcEEEEECCC--CCCCEEEEEECCCcCCceeeeeeecCCceEEEEEEcccCcccCeEEEEEEEcC
Confidence            34455555555432  34456777787753210000000011112346889999999999999987543

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.78  E-value=5.4e-05  Score=50.92  Aligned_cols=71  Identities=23%  Similarity=0.388  Sum_probs=46.6

Q ss_pred             ccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|+|.+.|..  .-.+.|.+.  |+.      |. .          ..|+.++..   .......|.|.
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD---~s~nt~yL~m~   84 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISAD---NSKNTAYLQMN   84 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEec---cccceEEeccc
Confidence            446789999999999999854  335678763  221      11 1          234444321   11223458999


Q ss_pred             ccccCCCeEEEEEEE
Q psy15667         69 HVTVEDGGEYACVAE   83 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~   83 (286)
                      +++.+|+++|.|...
T Consensus        85 ~L~~eDTAvYYCAr~   99 (117)
T d1jpth1          85 SLRAEDTAVYYCARD   99 (117)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCCceEEEEeec
Confidence            999999999999643

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.77  E-value=0.00012  Score=49.49  Aligned_cols=83  Identities=14%  Similarity=0.224  Sum_probs=46.5

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC---CCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS---PRF  239 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~---~~~  239 (286)
                      .+.+.+|++++|.|.... ....+.|.+..+.              +...+.           +....++....   ...
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g--------------~~~~~l-----------~~~~~~~~~~~~~~~~~   61 (112)
T d1kgce1           8 YKVAKRGQDVALRCDPIS-GHVSLFWYQQALG--------------QGPEFL-----------TYFQNEAQLDKSGLPSD   61 (112)
T ss_dssp             EEEEETTCCEEEEEECCT-TCCEEEEEEECTT--------------SCCEEE-----------EEEETTEEEECTTCCST
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEeeeeecc--------------cceEEe-----------eeeccCcccccCCCCCC
Confidence            456678999999998543 3457899884322              110110           11111111111   111


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      +............|.|.++.++|+|.|.|.+.
T Consensus        62 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~   93 (112)
T d1kgce1          62 RFFAERPEGSVSTLKIQRTQQEDSAVYLCASS   93 (112)
T ss_dssp             TEEEECTTSSCEEEEESSCCGGGCEEEEEEEE
T ss_pred             ceeeECCcCCEEEEEECCCCcCCCEEEEEeee
Confidence            22222222234579999999999999999775

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.77  E-value=2.9e-05  Score=51.82  Aligned_cols=82  Identities=15%  Similarity=0.264  Sum_probs=48.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+.+.++......++.++|.|.+.|. |. ..|+|.+||.........  ......++.  ..+.|.|..-.......
T Consensus         4 ~P~V~l~~ps~~~~~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~W~~~~~   81 (102)
T d1igtb4           4 APQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNT--EPVLDSDGSYFMYSKLRVEKKNWVERNS   81 (102)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEEC--CCEECTTSCEEEEEEEEEEHHHHHTCCC
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEc--cceeCCCCcEEEEEEEEECHHHcCCCCE
Confidence            4666654444433467889999999984 43 589999999875321111  011111221  23346666555455568


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+...
T Consensus        82 ytC~V~H~   89 (102)
T d1igtb4          82 YSCSVVHE   89 (102)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99998753

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.77  E-value=6.1e-05  Score=49.89  Aligned_cols=51  Identities=18%  Similarity=0.252  Sum_probs=28.6

Q ss_pred             CeEEEEeCCeeCCCCCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        224 LTIRWLKDGKPLSPRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..++|++||..+............ +.-.......+..+|.+.|+|.+.-..
T Consensus        36 i~v~W~~ng~~v~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~s   87 (100)
T d1k5nb_          36 IEVDLLKNGERIEKVEHSDLSFSKDWSFYLLYYTEFTPTEKDEYACRVNHVT   87 (100)
T ss_dssp             CEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cEEEEEECCEecCCccccceecCCCCcEEEEEEeEECCCCCCEEEEEEEeCC
Confidence            567888888877543221111111 111122333456778889999987654

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=6.1e-05  Score=50.63  Aligned_cols=84  Identities=17%  Similarity=0.254  Sum_probs=49.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+.+-++...-..++.++|.|.+.|. |. ..|+|.+||+.+..............++.  ..+.|.|..-.......
T Consensus         5 ~P~V~l~~ps~~~~~~~~~tL~Cl~~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~   84 (107)
T d1mjul2           5 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKIDGSERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNS   84 (107)
T ss_dssp             CCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEEETTEEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCE
Confidence            5666655544433356789999999984 44 48999999998754321111000011121  12346666665555668


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        85 ytC~V~H~   92 (107)
T d1mjul2          85 YTCEATHK   92 (107)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99999764

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.75  E-value=3e-05  Score=51.64  Aligned_cols=82  Identities=18%  Similarity=0.318  Sum_probs=48.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+..-++.......+.++|.|.+.|. |. -.|+|.+||..+......  ......++.  ..+.|+|..-.......
T Consensus         3 ~P~V~i~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~--~~~~~~dgtys~~S~L~v~~~~w~~~~~   80 (101)
T d1cqka_           3 APQVYTIPPPLEQMAKDLVSLTCMITDFFPEDITVEWQWNGQPAENYKNT--QPIMDTDGSYFVYSKLNVQKSNWEAGNT   80 (101)
T ss_dssp             CCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEEETTEECCSEEEC--CCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECCCHHHHCCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEe--eeecCCCCcEEEEEEEEECHHHhCCCCE
Confidence            4555544333333356789999999984 53 589999999886431111  111111222  23346666555555668


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        81 ytC~V~H~   88 (101)
T d1cqka_          81 FTCSVLHE   88 (101)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99998754

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.75  E-value=0.00013  Score=49.21  Aligned_cols=84  Identities=15%  Similarity=0.220  Sum_probs=47.6

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFP  240 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~  240 (286)
                      .+.+.+|++++|.|...+. ...+.|.+..+.              ....+.-           .....+...  ....+
T Consensus        10 ~~~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g--------------~~p~~l~-----------~~~~~~~~~~~~~~~~   63 (110)
T d2aq2a1          10 NKVAVTGEKVTLSCQQTNN-HNNMYWYRQDTG--------------HGLRLIH-----------YSYGVGNTEKGDIPDG   63 (110)
T ss_dssp             EEEECTTCCEEEEEEESSC-CSEEEEEEECTT--------------SCEEEEE-----------EESSTTCCEECSCCTT
T ss_pred             eEEEcCCCCEEEEEEECCC-cCcEEEEEEccc--------------CCceEEE-----------EEeecCCcccCCCCCC
Confidence            4566789999999987653 457899884322              1111111           000011100  00112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ............|.|.++..+|+|.|.|.+..
T Consensus        64 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          64 YEASRPSQEQFSLILESATPSQTSVYFCASGG   95 (110)
T ss_dssp             CEEEEEETTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EEEEeccCCEEEEEECCCCHhhCEEEEEeeCC
Confidence            22222223356799999999999999997764

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.75  E-value=6.5e-06  Score=55.33  Aligned_cols=82  Identities=13%  Similarity=0.231  Sum_probs=49.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCC-CeeEEeeCCEEcCCCCeeEeceEEecccce---eEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV---ISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~---~~~l~I~~~~~~D~G   76 (286)
                      ||.+.+-++...-..++.++|.|.+.| .|. -.|.|.+||..+........ .  ...++.   ...|.|..-...+..
T Consensus         5 ~P~V~v~~ps~~~~~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~-~--~~~~~tys~~S~l~v~~~~w~~~~   81 (104)
T d1nfde2           5 SPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTK-P--SKQGQNYMTSSYLSLTADQWKSHN   81 (104)
T ss_dssp             CCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCC-C--BCSSSCEEEEEBCCEEHHHHHTCS
T ss_pred             CCEEEEECCCHHHHcCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEecc-c--cCCCceEEEEEEEEEcHHHcCCCC
Confidence            676665444443335677999999998 454 48999999998864322110 0  111222   233555555555667


Q ss_pred             EEEEEEEcCC
Q psy15667         77 EYACVAENRA   86 (286)
Q Consensus        77 ~Y~C~a~n~~   86 (286)
                      .|+|.+....
T Consensus        82 ~ytC~V~H~~   91 (104)
T d1nfde2          82 RVSCQVTHEG   91 (104)
T ss_dssp             CEEEEEECTT
T ss_pred             EEEEEEEECC
Confidence            8999988753

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.74  E-value=0.00015  Score=47.41  Aligned_cols=81  Identities=20%  Similarity=0.409  Sum_probs=46.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.+....   ..++.++|.|.+.|. |. -.|+|.+||..+..+............+. ......-.+..+|...|+
T Consensus         3 pP~V~v~~~~---~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~~~t-y~~~s~l~v~~~~~~~yt   78 (94)
T d1hyrc1           3 PPMVNVTRSE---ASEGNITVTCRASGFYPWNITLSWRQDGVSLSHDTQQWGDVLPDGNGT-YQTWVATRICQGEEQRFT   78 (94)
T ss_dssp             CCEEEEEECC---CSSSEEEEEEEEEEEBSSCCEEEEEETTEECCSTTSEECCCEECSSSC-EEEEEEEEEETTCGGGEE
T ss_pred             CCEEEEEecC---CCCCCEEEEEEEEEEECCCcEEEEeECCeEcCCCeEEcCceEECCCCc-EEEEEEEEEcCCCCCEEE
Confidence            7777764332   345678999999994 44 48999999998864332211111111222 111222234445556799


Q ss_pred             EEEEcCC
Q psy15667         80 CVAENRA   86 (286)
Q Consensus        80 C~a~n~~   86 (286)
                      |.+.-..
T Consensus        79 C~V~H~~   85 (94)
T d1hyrc1          79 CYMEHSG   85 (94)
T ss_dssp             EEEEETT
T ss_pred             EEEEECC
Confidence            9987543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.74  E-value=0.00015  Score=48.99  Aligned_cols=84  Identities=18%  Similarity=0.247  Sum_probs=48.3

Q ss_pred             ceEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SPRF  239 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~~~  239 (286)
                      .+++.+|++++|.|...+..  ..-+.|.+..|.-.              ..+.             ........ ....
T Consensus         9 s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~--------------~~~~-------------~~~~~~~~~~~~~   61 (111)
T d1cd0a_           9 SVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSA--------------PITV-------------IYEDNQRPSGVPD   61 (111)
T ss_dssp             EEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSC--------------CEEE-------------EBTTTBCCTTSCT
T ss_pred             eeEECCCCCEEEEEEECCCCccCceEEEeeeccCce--------------eEee-------------eccccccCcccCC
Confidence            45677899999999987643  34588988432210              0010             00000000 0111


Q ss_pred             Cceeeec-CCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        240 PVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       240 ~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ++..... ......|.|.+++.+|+|.|.|.+.+.
T Consensus        62 ~~~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~~   96 (111)
T d1cd0a_          62 RFAGSIDRSSNSASLTISGLKTEDEADYYCQSYDA   96 (111)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEET
T ss_pred             ceeEeecCCCCccccccccCCcccCcEEEEeeccC
Confidence            2222222 233568999999999999999987654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.74  E-value=6.6e-05  Score=50.46  Aligned_cols=81  Identities=12%  Similarity=0.174  Sum_probs=48.6

Q ss_pred             CCCeeEecccc-ccccCCCcEEEEEEeecC-CCC-eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCC
Q psy15667          1 TPPILTYSFIE-QTLQPGPAVSLKCIASGN-PTP-DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDG   75 (286)
Q Consensus         1 ~~p~~~~~~~~-~~~~~G~~~~l~C~~~g~-p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~   75 (286)
                      +||.+.+-++. ..+..++.++|.|.+.|. |.. .|+|.+||..+.......  .....++.  ..+.|+|..-...  
T Consensus         7 ~~P~v~i~~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~--~~~~~~gt~~~~S~L~v~~~~w~--   82 (107)
T d1hxmb2           7 VSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEG--NTMKTNDTYMKFSWLTVPEKSLD--   82 (107)
T ss_dssp             CSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEEC--CCEECSSSEEEEEEEEECTGGGG--
T ss_pred             CCCeEEEECCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEcc--ceecCCCeEEEEEEEEEecccCC--
Confidence            36666655444 367788999999999984 443 788999998775432221  11111222  1234555444332  


Q ss_pred             eEEEEEEEcC
Q psy15667         76 GEYACVAENR   85 (286)
Q Consensus        76 G~Y~C~a~n~   85 (286)
                      ..|+|.+.-.
T Consensus        83 ~~ytC~V~H~   92 (107)
T d1hxmb2          83 KEHRCIVRHE   92 (107)
T ss_dssp             SCEEEEEEET
T ss_pred             CeEEEEEEEC
Confidence            2799998754

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.74  E-value=4.7e-05  Score=51.70  Aligned_cols=81  Identities=15%  Similarity=0.220  Sum_probs=49.2

Q ss_pred             CeeEeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------CCCCeeEec----eEEecccceeEEEEEccc
Q psy15667          3 PILTYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------PTNNRFVIG----QFVSGHGDVISHVNISHV   70 (286)
Q Consensus         3 p~~~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~~~~~~~~~----~~~~~~~~~~~~l~I~~~   70 (286)
                      +.+...|...++.+|++++|.|...+.-...+.|++.  |+.+      .........    ............|.|..+
T Consensus         2 t~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~   81 (112)
T d1fo0b_           2 TLLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVA   81 (112)
T ss_dssp             CSEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEE
T ss_pred             CeEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecC
Confidence            3466778888999999999999876544457889974  3321      001100000    000000011124788889


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      .++|++.|.|...
T Consensus        82 ~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          82 NMSQGRTLYCTCS   94 (112)
T ss_dssp             SCCSCEEEEEEEE
T ss_pred             CccCCccEEEEEe
Confidence            9999999999754

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.74  E-value=0.00018  Score=48.62  Aligned_cols=83  Identities=12%  Similarity=0.171  Sum_probs=47.9

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-C-C--C
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-S-P--R  238 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~-~--~  238 (286)
                      .+.+.+|++++|.|...+ -...+.|.+..+.                          ..+.-+.....+... . +  .
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g--------------------------~~~~~l~~~~~~~~~~~~~~~~   60 (111)
T d2esve1           8 HSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMG--------------------------KEIKFLLHFVKESKQDESGMPN   60 (111)
T ss_dssp             EEEEETTCCEEEEEECCT-TCSEEEEEEEETT--------------------------SCEEEEEEEETTEEEECTTCCS
T ss_pred             EEEECCCCCEEEEEEECC-CCceEEEEEEccC--------------------------CcceecceecccCcccccCCCC
Confidence            456778999999997543 2357889874321                          111112222222211 1 1  1


Q ss_pred             CCceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++...........|.|.++..+|+|.|.|.+..
T Consensus        61 ~~f~~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          61 NRFLAERTGGTYSTLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             TTEEEECTTSSSEEEEESSCCGGGCEEEEEEEES
T ss_pred             ccEEEEcCCCCEEEEEECCcccCCCceEEEeeeC
Confidence            2222222222345799999999999999997653

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.73  E-value=0.0005  Score=46.49  Aligned_cols=86  Identities=16%  Similarity=0.212  Sum_probs=46.7

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|... .....+.|.+..+.              ....+.-....+.. .        .......+..
T Consensus         8 ~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g--------------~~~~~l~~~~~~~~-~--------~~~~~~~~~~   63 (114)
T d1ogae1           8 YLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPG--------------QGLRLIYYSQIVND-F--------QKGDIAEGYS   63 (114)
T ss_dssp             EEEEETTCCEEECCEEC-SCCSEEEEEEECTT--------------CCEEEEEEESSTTC-C--------EECSSCTTEE
T ss_pred             eEEEcCCCCEEEEEEEe-cCCCcEEEEeeccc--------------cCCcceeeeeeeec-c--------ccccCCCceE
Confidence            36677999999999975 34457899984322              11111110000000 0        0000011111


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..........|.|.++..+|+|.|.|.+..
T Consensus        64 ~~~~~~~~~~L~I~~~~~~DSa~YyCa~~~   93 (114)
T d1ogae1          64 VSREKKESFPLTVTSAQKNPTAFYLCASSS   93 (114)
T ss_dssp             ECCSSTTBCCEEECSCCSCCCEEEEEEEES
T ss_pred             EEcccCCeEEEEECcCCcCCceeEEEeecc
Confidence            111122345799999999999999997654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=8e-05  Score=50.23  Aligned_cols=72  Identities=21%  Similarity=0.291  Sum_probs=46.9

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ....++++|+++.|.|.+.|...  -.+.|+|.  |+.|      . .          ..|+.++..   .......|.|
T Consensus         6 sg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D---~s~~t~~L~m   82 (117)
T d1um5h1           6 SGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSD---KSSNTAYLEL   82 (117)
T ss_dssp             CCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEE---TTTTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEec---cCceeEeecc
Confidence            34467899999999999998543  35778863  2221      1 1          134443321   1122335999


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|++.|.|...
T Consensus        83 ~sL~~eDtAvYYCAr~   98 (117)
T d1um5h1          83 SSLTSEDSAVYYCARS   98 (117)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeec
Confidence            9999999999999643

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.73  E-value=2e-05  Score=53.65  Aligned_cols=74  Identities=12%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             EeccccccccCCCcEEEEEEeecCCCCeeEEeeC--CEEc------C-C--------CCeeEeceEEecccceeEEEEEc
Q psy15667          6 TYSFIEQTLQPGPAVSLKCIASGNPTPDIGWTLD--GFEL------P-T--------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus         6 ~~~~~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~--~~~l------~-~--------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...|..+++.+|++++|.|.... -...+.|++.  |+.+      . .        ..++..++    .......|.|.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~L~i~   76 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSR----IRTEHFPLTLE   76 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECC----SSSSBCCEEBS
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeec----CCCCceEeeec
Confidence            44566788999999999998653 2356889973  2211      0 0        01111110    11122358999


Q ss_pred             ccccCCCeEEEEEEEc
Q psy15667         69 HVTVEDGGEYACVAEN   84 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~n   84 (286)
                      +++.+|+|.|.|.+..
T Consensus        77 ~~~~~Dsa~YyCA~~~   92 (112)
T d2cdeb1          77 SARPSHTSQYLCASSE   92 (112)
T ss_dssp             SCCTTTCSEEEEEEEC
T ss_pred             cccccccccEEEEEec
Confidence            9999999999997654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.72  E-value=6.5e-05  Score=50.31  Aligned_cols=69  Identities=22%  Similarity=0.393  Sum_probs=45.3

Q ss_pred             ccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      .-.++++|+++.|+|.+.|..  ...+.|.+.  |+.      |. .          ..|+.++..   +......|.|.
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD---~s~nt~~L~~~   84 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRD---NAQNNLYLQLN   84 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEecc---Cccceeeeeee
Confidence            345789999999999998853  335678763  221      21 1          134444321   12223459999


Q ss_pred             ccccCCCeEEEEE
Q psy15667         69 HVTVEDGGEYACV   81 (286)
Q Consensus        69 ~~~~~D~G~Y~C~   81 (286)
                      +++.+|++.|.|.
T Consensus        85 ~L~~eDtAvYYCA   97 (114)
T d1indh1          85 SLRSEDTALYFCA   97 (114)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             eeccCcccEEEEC
Confidence            9999999999995

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.72  E-value=9.5e-05  Score=48.86  Aligned_cols=51  Identities=20%  Similarity=0.286  Sum_probs=28.0

Q ss_pred             CeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        224 LTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..++|+++|..+........... +..-.......+..++.+.|+|.+.-..
T Consensus        35 i~V~W~~~g~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (99)
T d1lk2b_          35 IEIQMLKNGKKIPKVEMSDMSFSKDWSFYILAHTEFTPTETDTYACRVKHDS   86 (99)
T ss_dssp             CEEEEEETTEECTTCEEEEEEECTTCCEEEEEEEEECCCSSCCEEEEEECTT
T ss_pred             cEEEEeeCCeecCCcEECceeECCCCCEEEEEEeEecCcCCCEEEEEEEeCC
Confidence            56788888887754321111111 1111122233456778889999987653

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=6.6e-05  Score=49.25  Aligned_cols=79  Identities=16%  Similarity=0.301  Sum_probs=45.5

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYA   79 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~   79 (286)
                      ||.+.+....   ..++.++|.|.+.|..+  -.|+|.+||..+..+... ......+.+... ....-.+...+...|+
T Consensus         3 PP~v~v~~~~---~~~~~~~L~C~~~gFyP~~i~vtW~~~g~~~~~~~~~-~~~~~~~~~~~~-~~s~l~v~~~~~~~yt   77 (95)
T d1k5na1           3 PPKTHVTHHP---ISDHEATLRCWALGFYPAEITLTWQRDGEDQTQDTEL-VETRPAGDRTFQ-KWAAVVVPSGEEQRYT   77 (95)
T ss_dssp             CCEEEEEEEE---EETTEEEEEEEEEEEBSSCCEEEEEETTEECGGGCEE-CCCEECSSSCEE-EEEEEEEETTCGGGEE
T ss_pred             CCccEEEecc---CCCCCEEEEEEEEeEeCCCCEEEEEECCEEcCCCcee-ccEEcCCCCeEE-EEEEEEEEcCCCCEEE
Confidence            7777764322   23568999999999533  367999999987643221 111122222221 1112233445556899


Q ss_pred             EEEEcC
Q psy15667         80 CVAENR   85 (286)
Q Consensus        80 C~a~n~   85 (286)
                      |++.-.
T Consensus        78 C~V~H~   83 (95)
T d1k5na1          78 CHVQHE   83 (95)
T ss_dssp             EEEECT
T ss_pred             EEEEEC
Confidence            988754

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.72  E-value=8.1e-05  Score=49.53  Aligned_cols=86  Identities=14%  Similarity=0.209  Sum_probs=52.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      ||.+.+.++...-..++.++|.|.+.|. |. -.|+|.+||..+..+... .......++.  ..+.|+|..........
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~~i~v~W~~~g~~~~~~~~~-~~~~~~~dgtys~~S~L~v~~~~w~~~~~   83 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADSSPVKAGVET-TTPSKQSNNKYAASSYLSLTPEQWKSHRS   83 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEEETTEECCSSEEE-CCCEECTTSCEEEEEEEEECHHHHHHSSC
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCCCeEEEEEECCEECCCCEEe-CCcEECCCCEEEEEEEEEECHHHhCCCCE
Confidence            6777765544443456789999999984 43 378999999988643221 1111111221  23346666655444568


Q ss_pred             EEEEEEcCCEE
Q psy15667         78 YACVAENRAGT   88 (286)
Q Consensus        78 Y~C~a~n~~g~   88 (286)
                      |+|.+......
T Consensus        84 ytC~V~H~~~~   94 (102)
T d1rzfl2          84 YSCQVTHEGST   94 (102)
T ss_dssp             EEEEEEETTEE
T ss_pred             EEEEEEECCcc
Confidence            99999876543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.72  E-value=6.8e-05  Score=50.48  Aligned_cols=70  Identities=23%  Similarity=0.314  Sum_probs=45.8

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      -.++++|+++.|+|.+.|...  -.+.|.+.  |+.|      ..          ..|+.++..   .......|.|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~~L   85 (116)
T d7fabh1           9 PGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVN---TSKNQFSLRLSSV   85 (116)
T ss_dssp             CSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             CceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecc---cchhhhhcccccc
Confidence            357899999999999998543  35778763  3222      11          133433221   1122345999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYyCAr~   98 (116)
T d7fabh1          86 TAADTAVYYCARN   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999643

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.71  E-value=4.6e-05  Score=50.54  Aligned_cols=68  Identities=26%  Similarity=0.478  Sum_probs=43.3

Q ss_pred             ccccCCCcEEEEEEeecC--CCCeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcccc
Q psy15667         12 QTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .++++|+++.|.|.+.|.  -...+.|.+.  |+.|      ..          ..|+.++..   .......|.|.+++
T Consensus         3 ~lvkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd---~s~n~~~L~i~~l~   79 (107)
T d1sjva_           3 GLVQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRD---NAKKTVYLEMNSLE   79 (107)
T ss_dssp             CCCCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEEC---TTTCCEEEEECSCC
T ss_pred             CEecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecC---CceeEEEEeecCCC
Confidence            367899999999998874  2335678763  2221      11          134444321   12223469999999


Q ss_pred             cCCCeEEEEEE
Q psy15667         72 VEDGGEYACVA   82 (286)
Q Consensus        72 ~~D~G~Y~C~a   82 (286)
                      .+|++.|.|..
T Consensus        80 ~eDtAvYyCA~   90 (107)
T d1sjva_          80 PEDTAVYYCYT   90 (107)
T ss_dssp             GGGCSEEEEEE
T ss_pred             cccceeeeEec
Confidence            99999999953

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.71  E-value=6.7e-05  Score=49.83  Aligned_cols=71  Identities=25%  Similarity=0.471  Sum_probs=46.1

Q ss_pred             ccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cCC-------------CCeeEeceEEecccceeEEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LPT-------------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~~-------------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .-.++++|+++.|+|.+.|...  -.+.|.+.  |+.      |..             ..|+.++..   .......|.
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D---~s~~t~~L~   84 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRD---DSQSMLYLQ   84 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---TTTTEEEEE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccc---cccceeEec
Confidence            3457899999999999997432  35778763  221      111             124444321   112234599


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|+++|.|...
T Consensus        85 i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          85 MNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             ccCCCHhHCEEEEEEEc
Confidence            99999999999999643

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.71  E-value=8.7e-05  Score=50.63  Aligned_cols=71  Identities=28%  Similarity=0.467  Sum_probs=46.9

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|+|.+.|..  .-.+.|.+.  |+.      |. .          ..|+.++..   +......|.|.+
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D---~s~~t~yLq~~s   84 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQD---KAKNMAYLRMDS   84 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecc---cccceeeceecc
Confidence            35789999999999999843  346778863  222      21 1          134444321   112234599999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|++.|.|....
T Consensus        85 L~~eDtAvYYCAr~~   99 (124)
T d1zvya1          85 VKSEDTAIYTCGATR   99 (124)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             ccCCcceEEEEeecc
Confidence            999999999996543

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.71  E-value=5.1e-05  Score=51.19  Aligned_cols=67  Identities=24%  Similarity=0.465  Sum_probs=43.5

Q ss_pred             ccccCCCcEEEEEEeecC--CCCeeEEeeC--CEEc------C-CC----------CeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFEL------P-TN----------NRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~l------~-~~----------~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|++++|.|.+.|.  ....+.|++.  |+.+      . .+          .|+.++..   .......|.|.++
T Consensus        10 ~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D---~s~~t~~L~i~~l   86 (115)
T d1f3dh1          10 ELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVD---KSSSTAFMHLNSL   86 (115)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEE---TTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeec---cCceeeEeeeeec
Confidence            468999999999999874  3345778863  3222      1 11          23333211   1122335999999


Q ss_pred             ccCCCeEEEEE
Q psy15667         71 TVEDGGEYACV   81 (286)
Q Consensus        71 ~~~D~G~Y~C~   81 (286)
                      +.+|++.|.|.
T Consensus        87 ~~eDtAvYYCA   97 (115)
T d1f3dh1          87 TFEDSAVYYCA   97 (115)
T ss_dssp             CGGGCEEEEEE
T ss_pred             CcCCcEEEEEe
Confidence            99999999994

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00012  Score=50.15  Aligned_cols=24  Identities=21%  Similarity=0.300  Sum_probs=21.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEec
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..+|.|.+++++|+|.|.|.....
T Consensus        82 ~~sL~I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          82 NCTLSIRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEET
T ss_pred             EEEEEECCCChHHCEEEEEEEEeC
Confidence            557999999999999999998643

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.71  E-value=6.2e-05  Score=50.81  Aligned_cols=71  Identities=25%  Similarity=0.423  Sum_probs=46.3

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|.|.+.|...  -.+.|.+.  |+.      |..           ..|+.++..   +......|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD---~s~nt~~L~~~s   85 (118)
T d2fbjh1           9 GGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRD---NAKNSLYLQMSK   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEC---SSSCEEEEEECS
T ss_pred             CceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeec---Cccceeeccccc
Confidence            457899999999999998533  24678753  222      111           234444321   222334599999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (118)
T d2fbjh1          86 VRSEDTALYYCARLH  100 (118)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cCCCcceEEEeeEec
Confidence            999999999996543

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.71  E-value=0.00013  Score=44.78  Aligned_cols=58  Identities=21%  Similarity=0.359  Sum_probs=40.7

Q ss_pred             cCCCcEEEEEEeecCCCC--eeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         15 QPGPAVSLKCIASGNPTP--DIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      ..|..+.|+|.....+.+  --.|+|+|+.|..+..-          +....+.|..  .+|+|.|.|.-..
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~gkvl~ed~~~----------~~~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKGGVVLKEDALP----------GQKTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESSSEEEECTTCC----------CSEEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeCCEEccccCCC----------CCceEEEEec--CCCCceEEEEEcC
Confidence            568899999988765433  34599999999754321          1122466775  7799999998644

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.71  E-value=0.00035  Score=43.42  Aligned_cols=89  Identities=22%  Similarity=0.336  Sum_probs=53.9

Q ss_pred             eEEecCCCEEEEeeEeee-cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        164 VTAIDGEGLSIKCPVAGY-PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~-p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .++..|+.+.|.|.+.-- ..|.++|-+.....-.                   --.-.|...-.|.-++..        
T Consensus        13 hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv-------------------~Le~~pq~~TsW~e~~ni--------   65 (104)
T d1xaua_          13 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWV-------------------PLEVGPQLYTSWEENRSV--------   65 (104)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEE-------------------ECCCBTTEEEEEECSSSS--------
T ss_pred             eeEecCCceEecCcchhhcCCCCcEEEEeCCcEEE-------------------EeecCCccccchhhcCCe--------
Confidence            345678888888887653 3467777764432110                   001123344456543321        


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEeccc-ceeeEEEEEE
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA-QARYSSKLQV  285 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g-~~~~~~~L~V  285 (286)
                            ..-.|.+..+-++|.|.|+|.|.=..| ..+++..+.|
T Consensus        66 ------s~FvLhF~pvl~sDnGsYrCSanf~s~vieSHSvti~V  103 (104)
T d1xaua_          66 ------PVFVLHFKPIHLSDNGSYSCSTNFNSQVINSHSVTIHV  103 (104)
T ss_dssp             ------CEEEEEETTCCGGGCEEEEEEEEETTEEEECCCEEEEE
T ss_pred             ------eEEEEEeeeeeecCCCceEEecCCChhheecceEEEEe
Confidence                  123688999999999999999976554 4555666655

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.70  E-value=0.00012  Score=50.29  Aligned_cols=85  Identities=16%  Similarity=0.164  Sum_probs=48.2

Q ss_pred             CceEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRF  239 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~  239 (286)
                      +.+.+..|++++|.|...+..  ...+.|.+..+.              +...+..-            ......-....
T Consensus         9 ~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg--------------~~~~~l~~------------~~~~~~~~~~~   62 (120)
T d1hxma1           9 QTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQG--------------NTMTFIYR------------EKDIYGPGFKD   62 (120)
T ss_dssp             SEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESS--------------SCSEEEEE------------TTTEECTTTTT
T ss_pred             CCEEECCCCCEEEEEEEeccCccCCcCeEEEcccc--------------ccceeeec------------cccceeecccc
Confidence            345677899999999987643  356899874321              11111100            00000001112


Q ss_pred             Cceeeec-CCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++..... ......|.|.++.++|+|.|.|....
T Consensus        63 r~~~s~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~   96 (120)
T d1hxma1          63 NFQGDIDIAKNLAVLKILAPSERDEGSYYCACDT   96 (120)
T ss_dssp             TEEEEEEGGGTEEEEEESSCCGGGCEEEEEEEEC
T ss_pred             cceeeccccccceecccccccccCCceeecCccc
Confidence            2322221 12246899999999999999997654

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.70  E-value=9.9e-05  Score=49.65  Aligned_cols=69  Identities=23%  Similarity=0.405  Sum_probs=45.4

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|+|.+.|...  -.+.|.+.  |+.|      . .          ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D---~s~~t~yLq~~~   85 (117)
T d1jnhb1           9 AELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTAD---RSSSIVYLQLNS   85 (117)
T ss_dssp             CEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEecc---Cccceeeecccc
Confidence            356799999999999998533  35678762  2211      1 1          234544321   122234589999


Q ss_pred             cccCCCeEEEEEE
Q psy15667         70 VTVEDGGEYACVA   82 (286)
Q Consensus        70 ~~~~D~G~Y~C~a   82 (286)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jnhb1          86 LTSEDSAVYSCSR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999954

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.70  E-value=9.6e-05  Score=49.70  Aligned_cols=71  Identities=20%  Similarity=0.383  Sum_probs=46.2

Q ss_pred             ccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ...++++|+++.|.|.+.|...  -.+.|.+.  |+.|      ..          ..|+.++..   .......|.|.+
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D---~s~n~~~L~~~~   84 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKD---NSKSQVFLKMNS   84 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEE---GGGTEEEEEECS
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEecc---CCCceEEcceee
Confidence            3457899999999999998543  35668763  2222      11          123433221   122234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        85 l~~eDTAvYYCAr~   98 (116)
T d1a2yb_          85 LHTDDTARYYCARE   98 (116)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eeeccceEEEEEEe
Confidence            99999999999643

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=97.69  E-value=0.00019  Score=48.65  Aligned_cols=85  Identities=14%  Similarity=0.225  Sum_probs=47.9

Q ss_pred             CceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCC--CCC
Q psy15667        162 PKVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLS--PRF  239 (286)
Q Consensus       162 ~~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~--~~~  239 (286)
                      ..+.+.+|++++|.|..... ...+.|.+..+.              ....+.           +.+...+..-.  ...
T Consensus         9 ~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g--------------~~~~~l-----------~~~~~~~~~~~~~~~~   62 (113)
T d1nfdb1           9 RHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLG--------------KELKFL-----------IQHYEKVERDKGFLPS   62 (113)
T ss_dssp             SEEEEETTCCCEEEEECCTT-CCEEEEEEBCSS--------------CCCEEE-----------EEEETTTEEEESSCCT
T ss_pred             CEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCc--------------CCCcce-----------eeeeecccccCCCccc
Confidence            34667789999999986543 356899985322              111111           11111111110  111


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++...........|.|.++..+|+|.|.|.+..
T Consensus        63 ~~~~~~~~~~~~~L~I~~~~~~Dsa~YyCa~~~   95 (113)
T d1nfdb1          63 RFSVQQFDDYHSEMNMSALELEDSAMYFCASSL   95 (113)
T ss_dssp             TCCCEECTTSCEEEECCSCCGGGCEEECEEEES
T ss_pred             ceeeEcCCCCeEEEEecccCcCCceeEEEEeec
Confidence            222222223345799999999999999997754

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.69  E-value=4.4e-05  Score=50.88  Aligned_cols=82  Identities=17%  Similarity=0.327  Sum_probs=48.0

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      .|.+.+..........+.++|.|.+.|. |. ..|+|.+||.++.....  .......++.  ..+.|.|..-...+...
T Consensus         4 ~P~V~i~~p~~~~~~~~~~~L~C~v~~f~P~~i~v~W~~~g~~~~~~~~--~~~~~~~dgt~s~~S~L~v~~~~w~~~~~   81 (102)
T d1i1ca2           4 GPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWKMNGQPQENYKN--TPPTMDTDGSYFLYSKLNVKKETWQQGNT   81 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEE--CCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECCCHHHhcCCeEEEEEEEEEEECCCCEEEEEECCeeccCcEE--cccEeCCCCCEEEEEEEEECHHHhCCCCE
Confidence            3555544433333345789999999985 33 47999999987642111  1011111222  23346777666566668


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        82 ytC~V~H~   89 (102)
T d1i1ca2          82 FTCSVLHE   89 (102)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99998753

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.68  E-value=0.00025  Score=47.06  Aligned_cols=78  Identities=18%  Similarity=0.283  Sum_probs=45.7

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~   77 (286)
                      .|.+.+.... .+..|+..+|.|.+.|. |. -.|.|.+||..+........  ....++..  .+.|.|   ..+|...
T Consensus         4 ~P~v~v~~~~-p~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~~~~~~~~~~~--~~~~dgty~~~S~L~v---~~~~~~~   77 (103)
T d1hdma1           4 FPIAEVFTLK-PLEFGKPNTLVCFVSNLFPPMLTVNWHDHSVPVEGFGPTFV--SAVDGLSFQAFSYLNF---TPEPSDI   77 (103)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEEBSSCEEEEEEETTEECSSCCCEEE--EEETTTEEEEEEEEEE---CCCTTCC
T ss_pred             CCeEEEECCC-chhcCCCeEEEEEEeeEECCCCEEEEEECCeecCCcEeceE--EeCCCCcEEEEEEEEE---ecCCCCE
Confidence            4555544333 34568889999999994 43 47889999988753222111  11122221  122443   4455567


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        78 ytC~V~H~   85 (103)
T d1hdma1          78 FSCIVTHE   85 (103)
T ss_dssp             EEEEEEET
T ss_pred             EEEEEEeC
Confidence            99988754

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.67  E-value=8.1e-05  Score=50.13  Aligned_cols=68  Identities=24%  Similarity=0.443  Sum_probs=44.7

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|.|.+.|..  ...+.|.+.  |+.      |. .          ..|+.++..   +......|.|.+
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD---~s~~tvyL~~~~   85 (118)
T d1nlbh1           9 PELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLE---TSASTAYLQINS   85 (118)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEec---CCceeEEeeeee
Confidence            35689999999999998843  235778763  221      21 1          234444321   112234589999


Q ss_pred             cccCCCeEEEEE
Q psy15667         70 VTVEDGGEYACV   81 (286)
Q Consensus        70 ~~~~D~G~Y~C~   81 (286)
                      ++.+|++.|.|.
T Consensus        86 L~~eDtAvYYCA   97 (118)
T d1nlbh1          86 LKNEDTATYFCA   97 (118)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccCcceEEEEe
Confidence            999999999994

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.66  E-value=0.00019  Score=48.50  Aligned_cols=85  Identities=15%  Similarity=0.284  Sum_probs=47.6

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC---CCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL---SPRF  239 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~---~~~~  239 (286)
                      .+.+.+|++++|.|..... ...+.|.+..+.              ....+            +.+.......   ....
T Consensus         7 ~~~~~~G~svtL~C~~~~~-~~~~~WYrQ~~g--------------~~~~~------------l~~~~~~~~~~~~~~~~   59 (112)
T d2cdeb1           7 YLVIGTGKKITLECSQTMG-HDKMYWYQQDPG--------------MELHL------------IHYSYGVNSTEKGDLSS   59 (112)
T ss_dssp             EEEEETTCCBCCEEEETTC-CSEEEEEEECTT--------------SCCEE------------EEEESSTTCCEESSSCC
T ss_pred             EEEECCCCCEEEEEEEeCC-cccEEEEEEcCC--------------CCcEE------------eeeeeccCccccccccc
Confidence            3566789999999986532 356889884321              11111            1111111100   0111


Q ss_pred             CceeeecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        240 PVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       240 ~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .............|.|.++.++|+|.|.|.+....
T Consensus        60 ~~~~~~~~~~~~~L~i~~~~~~Dsa~YyCA~~~~~   94 (112)
T d2cdeb1          60 ESTVSRIRTEHFPLTLESARPSHTSQYLCASSENI   94 (112)
T ss_dssp             CCEECCSSSSBCCEEBSSCCTTTCSEEEEEEECSS
T ss_pred             cceeecCCCCceEeeeccccccccccEEEEEecCC
Confidence            11111222334579999999999999999876543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.66  E-value=0.00011  Score=49.59  Aligned_cols=69  Identities=23%  Similarity=0.398  Sum_probs=45.3

Q ss_pred             ccccccCCCcEEEEEEeecCCCC---eeEEee--CCEEc------CC----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTP---DIGWTL--DGFEL------PT----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p---~v~W~~--~~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      .-.++++|+++.|+|.+.|....   .+.|.|  .|+.|      ..          ..|+.++..   .......|.|.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D---~s~nt~~L~~~   84 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRD---TSKNQFFLQLN   84 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEE---TTTTEEEEEEC
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecc---cccceeecccc
Confidence            34578999999999999986543   357876  24332      11          123333221   11223459999


Q ss_pred             ccccCCCeEEEEE
Q psy15667         69 HVTVEDGGEYACV   81 (286)
Q Consensus        69 ~~~~~D~G~Y~C~   81 (286)
                      +++.+|++.|.|.
T Consensus        85 sL~~eDTAvYYCA   97 (119)
T d1ncwh1          85 SVTTEDTATYYCA   97 (119)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccccCCceEEEEe
Confidence            9999999999995

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=8.2e-05  Score=50.27  Aligned_cols=69  Identities=20%  Similarity=0.386  Sum_probs=45.4

Q ss_pred             ccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|+|.+.|...  -.+.|.+.  |+.      |..           ..|+.++..   .......|.|.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD---~s~nt~~L~~~   84 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTAD---QSSSTAYMQLN   84 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcc---cCcceEEeeee
Confidence            3457899999999999998543  35778863  222      221           124444321   11223459999


Q ss_pred             ccccCCCeEEEEE
Q psy15667         69 HVTVEDGGEYACV   81 (286)
Q Consensus        69 ~~~~~D~G~Y~C~   81 (286)
                      +++.+|++.|.|.
T Consensus        85 sL~~eDTAvYYCA   97 (119)
T d1eapb1          85 SLTSEDSAVYFCK   97 (119)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             cccCCcceEEEEE
Confidence            9999999999994

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.63  E-value=0.00011  Score=49.72  Aligned_cols=70  Identities=24%  Similarity=0.410  Sum_probs=45.7

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|.|.+.|..  .-.+.|.+.  |+.      |. .          ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD---~s~nt~yLqm~s   85 (119)
T d1rz7h1           9 AEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITAD---TSTDTGYLELSS   85 (119)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecc---cCceEEEeeeec
Confidence            45679999999999999843  335778763  221      11 1          135544321   112234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999643

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.63  E-value=0.00012  Score=48.42  Aligned_cols=66  Identities=20%  Similarity=0.276  Sum_probs=33.0

Q ss_pred             CeEEEEEeeecCC-CCCeEEEEeCCeeCCCCCCc-eee-ecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        209 ARTRVICGVTHGD-PPLTIRWLKDGKPLSPRFPV-NVS-DLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       209 ~~~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~~-~~~-~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ....|.|.+.+-. +...++|+++|..+...... ... ..++.-.......+..++.+.|+|.+.-..
T Consensus        18 ~~~tL~C~v~gFyP~~i~v~W~~ng~~v~~~~~~t~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          18 QPNTLICFVDNIFPPVINITWLRNSKSVADGVYETSFFVNRDYSFHKLSYLTFIPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             SCEEEEEEEEEECSSCCEEEEEESSSBCCSSEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCEEEEEEEEeEECCCCEEEEEeCCeeccCCceeeeeEECCCCCEEEEEEeEEcCCCCCEEEEEEEECC
Confidence            3334444443322 23678888888777532110 001 111111122233455678889999998653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.63  E-value=5.1e-05  Score=51.20  Aligned_cols=70  Identities=23%  Similarity=0.431  Sum_probs=45.3

Q ss_pred             ccccCCCcEEEEEEeecC--CCCeeEEeeC--CEE----cCC---C--------CeeEeceEEecccceeEEEEEccccc
Q psy15667         12 QTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFE----LPT---N--------NRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~----l~~---~--------~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      .++.+|++|+|.|...+.  ......|.+.  |+.    +..   .        +|+.+..   ........|+|.+++.
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~---d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKH---DPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEE---EGGGTEEEEEECSCCG
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEE---ECCCCEEEEEECcccc
Confidence            468999999999998753  4456789973  321    111   1        2333321   1122245699999999


Q ss_pred             CCCeEEEEEEEc
Q psy15667         73 EDGGEYACVAEN   84 (286)
Q Consensus        73 ~D~G~Y~C~a~n   84 (286)
                      +|+|.|.|....
T Consensus        82 eDsa~YyCa~~~   93 (110)
T d1u9ka_          82 TDSGLYRCVIYH   93 (110)
T ss_dssp             GGCEEEEEEEEC
T ss_pred             CCCEEEEEEEeC
Confidence            999999997543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.63  E-value=0.00014  Score=47.76  Aligned_cols=77  Identities=14%  Similarity=0.145  Sum_probs=44.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCCC-eeEEeeCCEEcCCCCeeEeceEEecccce--eEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPTP-DIGWTLDGFELPTNNRFVIGQFVSGHGDV--ISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~p-~v~W~~~~~~l~~~~~~~~~~~~~~~~~~--~~~l~I~~~~~~D~G~   77 (286)
                      +|.+......  ...++.++|.|.+.| .|.. .|+|.+|+..+.......  .....++..  .+.|.|..   +|...
T Consensus         3 ~P~V~l~~~~--~~~~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~--~~~~~dgty~~~S~L~v~~---~~~~~   75 (96)
T d2h26a1           3 KPEAWLSSGP--SPGPGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGD--ILPNANWTWYLRATLDVAD---GEAAG   75 (96)
T ss_dssp             CCEEEEEEES--CCSTTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECC--CEECTTSCEEEEEEEEEEG---GGCTT
T ss_pred             CCEEEEEcCC--CCCCCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCc--cEeCCCCcEEEEEEEEEeC---ccCCE
Confidence            3555443322  235678999999998 4655 899999998765322111  111122221  23355543   45568


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+.-.
T Consensus        76 ytC~V~H~   83 (96)
T d2h26a1          76 LSCRVKHS   83 (96)
T ss_dssp             EEEEEEEG
T ss_pred             EEEEEEeC
Confidence            99988753

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.63  E-value=0.00015  Score=49.09  Aligned_cols=72  Identities=22%  Similarity=0.395  Sum_probs=46.9

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC-----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT-----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~-----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ....++++|+++.|+|.+.|...  -.+.|.+.  |+.|      ..           ..|+.++..   +......|.|
T Consensus         8 sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D---~s~ntvyL~~   84 (122)
T d1vgeh1           8 SGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRD---TSATTAYMGL   84 (122)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             cCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEecc---CCcceeeecc
Confidence            44567899999999999998543  35678763  2221      11           134433321   1222335899


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|+++|.|...
T Consensus        85 ~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          85 SSLRPEDTAVYYCARD  100 (122)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeec
Confidence            9999999999999654

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.62  E-value=0.0001  Score=49.62  Aligned_cols=70  Identities=20%  Similarity=0.403  Sum_probs=45.1

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|++|.|+|.+.|..  .-.+.|++.  |+.|      . .          ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D---~s~~t~~L~i~~   85 (117)
T d1iqdb1           9 AEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTAD---TSTNIAYMELSS   85 (117)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecc---cccceEEEeecc
Confidence            35689999999999998753  335678763  2221      1 1          223333221   112233599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          86 LRSDDTAVYYCAVP   99 (117)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcCcceEEEEeEc
Confidence            99999999999654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=48.96  Aligned_cols=72  Identities=22%  Similarity=0.348  Sum_probs=45.7

Q ss_pred             ccccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +....++++|+++.|+|.+.|.-  ...+.|.+.  |+.|      . .          ..|+.++..   .......|.
T Consensus         6 qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D---~s~~~~~L~   82 (117)
T d1mfah1           6 QSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAV---TSTTTAYME   82 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcc---cCccEeEee
Confidence            34456789999999999998742  335667753  3322      1 1          123333221   122234599


Q ss_pred             EcccccCCCeEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVA   82 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a   82 (286)
                      |.+++.+|++.|.|..
T Consensus        83 i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          83 LSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             ECSCCGGGCEEEEEEE
T ss_pred             ecccCCCcceEEEEec
Confidence            9999999999999953

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.62  E-value=0.00018  Score=48.71  Aligned_cols=23  Identities=22%  Similarity=0.372  Sum_probs=19.8

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...|.|.+++.+|+|.|.|....
T Consensus        75 ~~~Lti~~l~~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          75 LLRVRMVNLQVEDSGLYQCVIYQ   97 (113)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEEEccCCcccCceEEEEEEC
Confidence            45799999999999999997643

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=0.00022  Score=48.63  Aligned_cols=72  Identities=13%  Similarity=0.102  Sum_probs=44.7

Q ss_pred             cccccccCCCcEEEEEEeecCCCC---eeEEeeC--CEEc--------C------CCCeeEeceEEecccceeEEEEEcc
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTP---DIGWTLD--GFEL--------P------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p---~v~W~~~--~~~l--------~------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      |....+.+|++++|.|.....-.+   .+.|+|.  |+.+        .      .+.++...   . ..+....|.|.+
T Consensus         6 P~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~---~-~~~~~~~L~I~~   81 (118)
T d1i8lc_           6 PAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTG---T-SSGNQVNLTIQG   81 (118)
T ss_dssp             CSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCC---C-BCSSEEEEEECS
T ss_pred             CCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeE---c-CCCCEEEEEeec
Confidence            445678999999999987543222   4889974  2211        0      00111000   1 112234699999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|+|.|.|.+..
T Consensus        82 l~~~Dsa~YyCa~~~   96 (118)
T d1i8lc_          82 LRAMDTGLYICKVEL   96 (118)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCCEEEEEeEec
Confidence            999999999997654

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=7.5e-05  Score=49.68  Aligned_cols=82  Identities=16%  Similarity=0.320  Sum_probs=48.3

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      .|.+..-.+...-..++.++|.|.+.|. |. -.|+|.+||........  .......++.  ..+.|.|..-.......
T Consensus         4 ~P~V~i~~ps~~~~~~~~~tL~Clv~gf~P~~i~v~W~~~g~~~~~~~~--~~~~~~~dgtys~~S~L~v~~~~w~~g~~   81 (102)
T d1l6xa2           4 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQPENNYKT--TPPVLDSDGSFFLYSKLTVDKSRWQQGNV   81 (102)
T ss_dssp             CCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEEETTEEECCEEE--CCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             CCEEEEECcCHHHhcCCceEEEEEEEEeECCCCEEEEEECCEECCCeEE--cceEECCCCCEEEEEEEEECHHHcCCCCE
Confidence            4555543434333357889999999984 54 48999999987643111  1111111221  23346666655555558


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+...
T Consensus        82 ytC~V~H~   89 (102)
T d1l6xa2          82 FSCSVMHE   89 (102)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEeC
Confidence            99998764

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.61  E-value=0.00099  Score=44.85  Aligned_cols=86  Identities=20%  Similarity=0.199  Sum_probs=47.0

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+.+|++++|.|.... -...+.|.+..+              |....+.-....+..         ...-....+..
T Consensus         9 ~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~p--------------g~~~~~l~~~~~~~~---------~~~~~~~~~~~   64 (113)
T d1j8he1           9 YLVKRTGEKVFLECVQDM-DHENMFWYRQDP--------------GLGLRLIYFSYDVKM---------KEKGDIPEGYS   64 (113)
T ss_dssp             EEEEETTCCEEECEEESS-CCSEEEEEEEET--------------TTEEEEEEEESSTTC---------CEECSCCTTEE
T ss_pred             EEEECCCCCEEEEEEEcC-CccEEEeEEecC--------------CCCcceeeeeeeeee---------eecccccccce
Confidence            356678999999998643 235688988432              222222111100000         00000111222


Q ss_pred             eeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        243 VSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       243 ~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..........|.|.++.++|+|.|.|.+..
T Consensus        65 ~~~~~~~~~~L~i~~~~~~Dsa~YyCa~~~   94 (113)
T d1j8he1          65 VSREKKERFSLILESASTNQTSMYLCASSS   94 (113)
T ss_dssp             EECSSTTBCEEEESSCCGGGCEEEEEEEEC
T ss_pred             EEeccCcEeeeEeccCccCCcccEEeeEcc
Confidence            222223345799999999999999998764

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.61  E-value=0.00022  Score=48.11  Aligned_cols=69  Identities=25%  Similarity=0.442  Sum_probs=45.1

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC-------------CCeeEeceEEecccceeEEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT-------------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~-------------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      -.++++|+++.|.|.+.|..  .-.+.|.+.  |+.|      ..             ..|+.++..   +......|.|
T Consensus         9 ~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D---~s~n~~~L~~   85 (120)
T d1dlfh_           9 GGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRD---DSKRRVYLQM   85 (120)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEE---TTTTEEEEEE
T ss_pred             CceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecc---cccceeccce
Confidence            34689999999999998753  345778763  3322      11             124444321   1122345899


Q ss_pred             cccccCCCeEEEEEE
Q psy15667         68 SHVTVEDGGEYACVA   82 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a   82 (286)
                      .+++.+|++.|.|..
T Consensus        86 ~~L~~eDtAvYYCA~  100 (120)
T d1dlfh_          86 NTLRAEDTGIYYCTG  100 (120)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             eeccCCCceEEEeeE
Confidence            999999999999954

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.60  E-value=0.00018  Score=48.16  Aligned_cols=84  Identities=17%  Similarity=0.250  Sum_probs=49.9

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+.+-++.......+.++|.|.+.|. |. ..|+|.+||..+..............++.  ..+.|.|..-.......
T Consensus         5 ~P~V~l~~Ps~~~~~~~~~~L~Clv~~f~P~~i~v~W~~ng~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~   84 (107)
T d1c5cl2           5 APSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKVDNALQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKV   84 (107)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEETTEECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCE
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEEeeCCCCEEEEEECCEECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCE
Confidence            5666654444333346789999999984 54 48999999987754322111000011121  23347776665555558


Q ss_pred             EEEEEEcC
Q psy15667         78 YACVAENR   85 (286)
Q Consensus        78 Y~C~a~n~   85 (286)
                      |+|.+...
T Consensus        85 ytC~V~H~   92 (107)
T d1c5cl2          85 YACEVTHQ   92 (107)
T ss_dssp             EEEEEECT
T ss_pred             EEEEEEEC
Confidence            99998864

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.60  E-value=0.00019  Score=49.56  Aligned_cols=70  Identities=23%  Similarity=0.407  Sum_probs=45.5

Q ss_pred             ccccCCCcEEEEEEeecCC----CCeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         12 QTLQPGPAVSLKCIASGNP----TPDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p----~p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      .++++|+++.|.|.+.|..    ..-+.|++.  |+.+      ..          ..|+.++..   +......|.|.+
T Consensus        10 ~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d---~s~~~~~L~i~~   86 (132)
T d1tjgh1          10 PLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKD---TSKNQVVLVMTR   86 (132)
T ss_dssp             SEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             eeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceeccc---ccccEEEccccc
Confidence            5789999999999988743    234779863  2221      00          134433211   112234699999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|++.|.|....
T Consensus        87 l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          87 VSPVDTATYFCAHRR  101 (132)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             CCcccceEEEEEEec
Confidence            999999999997554

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.60  E-value=0.00011  Score=49.99  Aligned_cols=70  Identities=26%  Similarity=0.451  Sum_probs=45.3

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|.|.+.|...  -.+.|.+.  |+.      |..           ..|+.++..   .......|.|.+
T Consensus         9 ~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D---~s~nt~~L~i~~   85 (123)
T d1mqkh_           9 GDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRD---NAKNTLYLQMSS   85 (123)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEec---Ccccccccceee
Confidence            457889999999999988532  34678763  221      211           123444321   112234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (123)
T d1mqkh_          86 LKSEDTAMYYCVRH   99 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eccCcccceeEEec
Confidence            99999999999644

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.60  E-value=0.00012  Score=49.90  Aligned_cols=69  Identities=22%  Similarity=0.359  Sum_probs=43.8

Q ss_pred             cccccCCCcEEEEEEeecCC----CCeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP----TPDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      -.++++|++++|.|.+.|..    ..-+.|++.  |+.+      ..          ..|+.++..   .......|.|.
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D---~s~~~~~L~i~   85 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKD---TSNNQAFLNMM   85 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEE---GGGTEEEEEEC
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEcccc---ccceeEEccee
Confidence            35788999999999988742    124679863  3221      11          123433221   11123459999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|++.|.|..
T Consensus        86 sl~~eDsAvYyCAr   99 (123)
T d1r0ah1          86 TVETADTAIYYCAQ   99 (123)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ecccccceEEeecc
Confidence            99999999999953

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.59  E-value=0.00016  Score=48.67  Aligned_cols=68  Identities=28%  Similarity=0.480  Sum_probs=45.0

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .++++|+++.|.|.+.|..  .-.+.|.+.  |+.|      ..          ..|+.++..   .......|.|.+++
T Consensus        10 ~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD---~s~nt~~L~i~~l~   86 (118)
T d1lo4h1          10 DLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRD---IVRNILTLQMSRLR   86 (118)
T ss_dssp             CEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEE---TTTTEEEEEECSCC
T ss_pred             ceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEecc---ccceeeeecccccc
Confidence            4689999999999999853  345678763  2222      11          124444321   12223358999999


Q ss_pred             cCCCeEEEEEE
Q psy15667         72 VEDGGEYACVA   82 (286)
Q Consensus        72 ~~D~G~Y~C~a   82 (286)
                      .+|++.|.|..
T Consensus        87 ~eDtA~YyCAr   97 (118)
T d1lo4h1          87 SEDTAIYYCAR   97 (118)
T ss_dssp             GGGCEEEEEEE
T ss_pred             CCcceEEEecc
Confidence            99999999953

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.59  E-value=0.00012  Score=49.12  Aligned_cols=71  Identities=25%  Similarity=0.378  Sum_probs=45.7

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-CC----------CeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-TN----------NRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~~----------~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ..-.++++|+++.|+|.+.|...  -.+.|.+.  |+.|      . .+          .|+.++..   .......|.|
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D---~s~~tvyL~~   83 (116)
T d1mjuh1           7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVD---TSSSTAYMQL   83 (116)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             ECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecc---cccceeEecc
Confidence            34457899999999999998543  35668762  2221      1 11          24444321   1122345899


Q ss_pred             cccccCCCeEEEEEE
Q psy15667         68 SHVTVEDGGEYACVA   82 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a   82 (286)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            999999999999953

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.59  E-value=5.4e-05  Score=51.42  Aligned_cols=70  Identities=26%  Similarity=0.311  Sum_probs=45.5

Q ss_pred             ccccccCCCcEEEEEEeecCCC----CeeEEeeC--CEEc------CCC----------CeeEeceEEecccceeEEEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT----PDIGWTLD--GFEL------PTN----------NRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~----p~v~W~~~--~~~l------~~~----------~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ...++++|++++|.|.+.|...    .-+.|.|.  |+.|      ..+          .|+.++..   +......|.|
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD---~s~n~~~L~~   84 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRD---TSLNKFFIQL   84 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEE---TTTTEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccc---cccceeecce
Confidence            3457899999999999987532    24678763  3222      111          24444321   1222345999


Q ss_pred             cccccCCCeEEEEEE
Q psy15667         68 SHVTVEDGGEYACVA   82 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a   82 (286)
                      .+++.+|++.|.|..
T Consensus        85 ~sL~~eDtAvYYCAr   99 (120)
T d1ai1h1          85 ISVTNEDTAMYYCSR   99 (120)
T ss_dssp             SSCCGGGCEEEEEEE
T ss_pred             eeeeccceeEEEEEe
Confidence            999999999999953

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.58  E-value=0.00014  Score=49.33  Aligned_cols=71  Identities=24%  Similarity=0.433  Sum_probs=46.5

Q ss_pred             ccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CC-------------CCeeEeceEEecccceeEEEE
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PT-------------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~-------------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      .-.++++|+++.|+|.+.|...  -.+.|.+.  |+.|      ..             ..|+.++..   .......|.
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD---~s~nt~~L~   84 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRD---NSQSILYLQ   84 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEE---TTTTEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeee---cccceeccc
Confidence            3457899999999999988533  35778863  3222      10             134444321   112234599


Q ss_pred             EcccccCCCeEEEEEEE
Q psy15667         67 ISHVTVEDGGEYACVAE   83 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~a~   83 (286)
                      |.+++.+|++.|.|...
T Consensus        85 ~~sL~~eDTAvYYCar~  101 (122)
T d1q9rb1          85 MNTLRAEDSATYYCARD  101 (122)
T ss_dssp             ECSCCGGGCEEEEEEEC
T ss_pred             eeeeccCcceEEEEEec
Confidence            99999999999999653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.58  E-value=0.00014  Score=49.46  Aligned_cols=70  Identities=23%  Similarity=0.387  Sum_probs=45.5

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|+|.+.|...  -.+.|.+.  |+.      |..           ..|+.++..   +......|.|.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD---~s~~t~yL~m~s   85 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRD---NPKNTLFLQMTS   85 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEecc---CCccEeEeeeee
Confidence            356799999999999998543  34678763  221      111           134444321   111233589999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+++|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (122)
T d1bz7b1          86 LRSEDTAIYYCTRG   99 (122)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ecccCceEEEeecC
Confidence            99999999999653

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.58  E-value=0.00028  Score=48.15  Aligned_cols=24  Identities=25%  Similarity=0.411  Sum_probs=21.0

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEec
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ...|.|.++..+|+|.|.|.+...
T Consensus        74 ~~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          74 QVNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEEeeccccCCCEEEEEeEecc
Confidence            568999999999999999987654

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00018  Score=48.98  Aligned_cols=71  Identities=20%  Similarity=0.364  Sum_probs=46.2

Q ss_pred             cccccccCCCcEEEEEEeecCCCC--eeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPTP--DIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ....++++|+++.|.|.+.|....  .+.|.+.  |+.      |. .          ..|+.++..   .......|.|
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D---~s~nt~yL~m   82 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTAD---TSSNIAYMQL   82 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEec---CCccEEEeee
Confidence            345678999999999999985433  4667762  222      11 1          134434321   1222346999


Q ss_pred             cccccCCCeEEEEEE
Q psy15667         68 SHVTVEDGGEYACVA   82 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a   82 (286)
                      .+++.+|++.|.|..
T Consensus        83 ~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          83 SSLTSEDSAVYYCAR   97 (126)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEEee
Confidence            999999999999953

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.57  E-value=0.00023  Score=47.96  Aligned_cols=70  Identities=23%  Similarity=0.384  Sum_probs=45.0

Q ss_pred             ccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|+|.+.|..  .-.+.|.|.  |+.      |. .          ..|+.++..   .......|.|.
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D---~s~~t~yL~i~   84 (118)
T d1ct8b1           8 GAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVD---TSSSTAYMQFS   84 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEec---CccceEEeccc
Confidence            346789999999999999843  235667752  222      11 1          123333221   12223458999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (118)
T d1ct8b1          85 SLTTEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999954

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.57  E-value=0.0002  Score=49.12  Aligned_cols=70  Identities=24%  Similarity=0.439  Sum_probs=45.6

Q ss_pred             ccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC-----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT-----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~-----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|+|.+.|..  ...+.|.+.  |+.|      ..           .+|+.++..   .......|.|.
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD---~s~~t~yL~i~   84 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRD---NAKNTLYLQMN   84 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEEC---TTTCCEEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEecc---CCCceeEecEe
Confidence            345789999999999999853  235678763  2222      11           134444321   11223458999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|+++|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (135)
T d1ieha_          85 SLKSEDTAVYYCAK   98 (135)
T ss_dssp             SCCSSSCEEEEEEE
T ss_pred             eeCcccceeeEEEE
Confidence            99999999999954

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00014  Score=49.81  Aligned_cols=72  Identities=21%  Similarity=0.353  Sum_probs=45.8

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ..-.++++|+++.|+|.+.|...  -.+.|.+.  |+.|      . .          ..|+.++..   +......|.|
T Consensus         7 sg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D---~s~n~vyL~l   83 (125)
T d1rihh1           7 SGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTAD---RSSNTAFMYL   83 (125)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             ECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecc---cCcceEeeee
Confidence            33457899999999999988532  34677752  3221      1 1          123333221   1122345899


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|++.|.|...
T Consensus        84 ~sL~~eDtAvYYCAR~   99 (125)
T d1rihh1          84 NSLTSEDSAVYYCARE   99 (125)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCcccceEEEEeee
Confidence            9999999999999644

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.57  E-value=0.00036  Score=47.10  Aligned_cols=25  Identities=16%  Similarity=0.165  Sum_probs=21.5

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ....|.|.+++.+|+|.|.|.+...
T Consensus        77 ~~~sL~I~~v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          77 KVCNLLLKDLKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEECC
T ss_pred             CEEEEEECCCChhHCEEEEEEEEeC
Confidence            3557999999999999999988654

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.57  E-value=0.00019  Score=49.09  Aligned_cols=69  Identities=25%  Similarity=0.453  Sum_probs=44.0

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|+++.|+|.+.|..  .-.+.|.+.  |+.|      . .          ..|+.++..   +......|.|.++
T Consensus         9 ~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~~l   85 (126)
T d1rjca1           9 GSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLD---NAKNTLYLQMNSL   85 (126)
T ss_dssp             EEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEE---C--CEEEEEECSC
T ss_pred             ceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEec---CCceEEEEEEecc
Confidence            4688999999999998843  335678763  3222      1 1          124444321   1122345999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999644

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.57  E-value=0.00016  Score=49.05  Aligned_cols=68  Identities=25%  Similarity=0.449  Sum_probs=44.1

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC-----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT-----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~-----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|++++|.|.+.|..  .-.+.|++.  |+.+      ..           ..|+.++..   .......|.|.++
T Consensus        10 ~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d---~s~~~~~L~i~~L   86 (119)
T d1qnzh_          10 ELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVE---KSSSTVYLEFSRL   86 (119)
T ss_dssp             CEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEE---TTTTEEEEEEEEE
T ss_pred             ceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecc---cccceeeeeeccc
Confidence            4788999999999988742  335778863  3221      11           124433211   1122345999999


Q ss_pred             ccCCCeEEEEEE
Q psy15667         71 TVEDGGEYACVA   82 (286)
Q Consensus        71 ~~~D~G~Y~C~a   82 (286)
                      +.+|++.|.|..
T Consensus        87 ~~eDsAvYYCA~   98 (119)
T d1qnzh_          87 TSDDSAVYYCAI   98 (119)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CccceeEEEEEE
Confidence            999999999943

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.57  E-value=0.00013  Score=49.33  Aligned_cols=68  Identities=29%  Similarity=0.546  Sum_probs=44.3

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|+++.|.|.+.|..  ...+.|.+.  |+.      |..           ..|+.++.   ........|.|.++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSr---D~s~~t~yLq~~~L   86 (121)
T d2p49b1          10 GLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISR---DKGKNTVYLQMDSL   86 (121)
T ss_dssp             EEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEEC---TTSTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEee---cCCceEEEEEeeec
Confidence            5789999999999998743  345678763  222      111           12443321   11222345999999


Q ss_pred             ccCCCeEEEEEE
Q psy15667         71 TVEDGGEYACVA   82 (286)
Q Consensus        71 ~~~D~G~Y~C~a   82 (286)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (121)
T d2p49b1          87 KPEDTATYYCAA   98 (121)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccceeEEeeec
Confidence            999999999964

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.56  E-value=0.00014  Score=49.90  Aligned_cols=69  Identities=26%  Similarity=0.450  Sum_probs=44.6

Q ss_pred             cccccCCCcEEEEEEeecCC----CCeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP----TPDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p----~p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      -.++++|++++|.|.+.|..    ...+.|++.  |+.+      ..          ..|+.++.   .+......|.|.
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~---d~s~~t~~L~i~   85 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSK---DTSSNQVFLKIT   85 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEE---ETTTTEEEEEEC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEec---ccCCcEEEccee
Confidence            35789999999999988732    234568753  2221      11          23444332   112223469999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|+++|.|..
T Consensus        86 ~l~~eDtAvYyCAr   99 (126)
T d1etzb1          86 SVDTSDTATYHCAR   99 (126)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             cccccccceEEEEE
Confidence            99999999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.56  E-value=0.00015  Score=49.20  Aligned_cols=69  Identities=22%  Similarity=0.462  Sum_probs=45.0

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|+++.|.|.+.|..  ...+.|++.  |+.|      . .          ..|+.++..   .......|.|.++
T Consensus        10 ~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d---~s~n~v~L~i~~l   86 (120)
T d1pg7x1          10 ELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVD---RSSTTAYIELVRL   86 (120)
T ss_dssp             EEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             cEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeec---cCcceEEcccccc
Confidence            4689999999999998753  335778863  3322      1 1          123433211   1222345999999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|++.|.|...
T Consensus        87 ~~eDtA~YYCAr~   99 (120)
T d1pg7x1          87 TSNDSAVYYCARE   99 (120)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCCcceEEEeeec
Confidence            9999999999754

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00024  Score=48.57  Aligned_cols=70  Identities=21%  Similarity=0.405  Sum_probs=45.7

Q ss_pred             cccccCCCcEEEEEEeecCCCC--eeEEeeC--CEEc------C-----------CCCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTP--DIGWTLD--GFEL------P-----------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~--~~~l------~-----------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|+|.+.|....  .+.|.+.  |+.|      .           -..|+.++..   +......|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D---~s~~t~yL~~~s   85 (128)
T d2nxyd1           9 AEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITAD---KSTSTVYLELRN   85 (128)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeec---CCCceEEeeeee
Confidence            4568999999999999985433  4567652  2211      1           1245555421   112234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+++|.|...
T Consensus        86 L~~eDTA~YYCAr~   99 (128)
T d2nxyd1          86 LRSDDTAVYFCAGV   99 (128)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccCceEEEEeEE
Confidence            99999999999754

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.55  E-value=0.00016  Score=47.60  Aligned_cols=67  Identities=18%  Similarity=0.238  Sum_probs=35.6

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCC-ceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFP-VNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~-~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      |..|+.+.|.|...  .....+.++|+|........ ..............|.+|+.+|+|.|+|.-...
T Consensus        15 v~~G~~VTL~C~~~--~~~~~f~L~k~g~~~~~~~~~~~~~~~~~~~a~F~l~~v~~~~~G~Y~C~y~~~   82 (98)
T d1ugna2          15 VNSGGNVTLQCDSQ--VAFDGFILCKEGEDEHPQCLNSQPHARGSSRAIFSVGPVSPSRRWWYRCYAYDS   82 (98)
T ss_dssp             EETTCCEEEEEECS--SCCSEEEEEEC------CEEEC------CCEEEEEECCCCTTSCEEEEEEEECT
T ss_pred             cCCCCcEEEEeCCC--CCCCEEEEEECCCcCCcEeeeeEEcCCCceEEEEEeeecccCCCeEEEEeeEcC
Confidence            44566666666532  33456777788764321100 000001122346889999999999999986543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.00013  Score=49.08  Aligned_cols=69  Identities=17%  Similarity=0.370  Sum_probs=44.7

Q ss_pred             ccccccCCCcEEEEEEeecCCCC--eeEEeeC--CEE------cC-CC----------CeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPTP--DIGWTLD--GFE------LP-TN----------NRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~--~~~------l~-~~----------~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|.|.+.|...-  .+.|.+.  |+.      |. .+          .|+.++..   .......|.|.
T Consensus         8 g~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D---~s~~t~~L~~~   84 (118)
T d2jelh1           8 GPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVD---KSSSTAYMELA   84 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEE---GGGTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecc---cCcceEeeccc
Confidence            34568999999999999985433  5778763  322      21 11          23333221   11223458999


Q ss_pred             ccccCCCeEEEEE
Q psy15667         69 HVTVEDGGEYACV   81 (286)
Q Consensus        69 ~~~~~D~G~Y~C~   81 (286)
                      +++.+|++.|.|.
T Consensus        85 sL~~eDTAvYYCA   97 (118)
T d2jelh1          85 RLTSEDSAIYYCA   97 (118)
T ss_dssp             SCCGGGCEEEEEE
T ss_pred             ccccCcceeeeEE
Confidence            9999999999994

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.54  E-value=0.00012  Score=49.37  Aligned_cols=70  Identities=24%  Similarity=0.357  Sum_probs=45.5

Q ss_pred             ccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      ...++++|+++.|.|.+.|...  -.+.|.+.  |+.|      . .          ..|+.++..   +......|.|.
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D---~s~nt~~L~m~   84 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVD---TSTNTAYMELS   84 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEec---CcceEEecccc
Confidence            3457899999999999998533  35678763  2222      1 1          133333321   11223458999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDTAvYYCAr   98 (120)
T d1ad9b1          85 SLRSEDTAFYFCAR   98 (120)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEEE
Confidence            99999999999954

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.54  E-value=0.00017  Score=49.32  Aligned_cols=69  Identities=25%  Similarity=0.405  Sum_probs=45.7

Q ss_pred             cccccCCCcEEEEEEeecCCC---CeeEEeeC--CEEc------CC----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT---PDIGWTLD--GFEL------PT----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~---p~v~W~~~--~~~l------~~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|.|.+.|...   ..+.|.+.  |+.|      ..          ..|+.++..   .......|.|.+
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d---~s~nt~yL~l~~   85 (127)
T d3cx5j1           9 AGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRD---TSKNQFFLKLNS   85 (127)
T ss_dssp             CSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecc---cccceeecceec
Confidence            357899999999999998543   35789863  4332      11          123333221   112234599999


Q ss_pred             cccCCCeEEEEEE
Q psy15667         70 VTVEDGGEYACVA   82 (286)
Q Consensus        70 ~~~~D~G~Y~C~a   82 (286)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYyCAr   98 (127)
T d3cx5j1          86 VTTEDTATYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEEeee
Confidence            9999999999964

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.54  E-value=0.00019  Score=48.91  Aligned_cols=71  Identities=20%  Similarity=0.322  Sum_probs=46.1

Q ss_pred             ccccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVN   66 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~   66 (286)
                      +..-.++++|+++.|.|.+.|...  -.+.|.+.  |+.      |. .          ..|+.++..   .......|.
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D---~s~nt~yL~   82 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTAD---TSANTAYME   82 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEE---GGGTEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecc---cCceEEEEE
Confidence            344568899999999999998532  34678763  322      11 1          134444321   112234589


Q ss_pred             EcccccCCCeEEEEE
Q psy15667         67 ISHVTVEDGGEYACV   81 (286)
Q Consensus        67 I~~~~~~D~G~Y~C~   81 (286)
                      |.+++.+|++.|.|.
T Consensus        83 ~~~L~~eDtAvYYCA   97 (127)
T d1n0xh1          83 LRSLRSADTAVYYCA   97 (127)
T ss_dssp             ECSCCGGGCEEEEEE
T ss_pred             EEccCCCCceEEEEE
Confidence            999999999999994

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=97.53  E-value=0.00067  Score=46.30  Aligned_cols=82  Identities=17%  Similarity=0.274  Sum_probs=46.3

Q ss_pred             eEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC-CeeC---CC
Q psy15667        164 VTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPL---SP  237 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~---~~  237 (286)
                      +...+|++++|.|.+.+..  ...+.|.+..+.              ....+            +.+... +...   ..
T Consensus        11 v~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg--------------~~~~~------------l~~~~~~~~~~~~~~~   64 (120)
T d1ypzf1          11 ISRPRDETAQISCKVFIESFRSVTIHWYRQKPN--------------QGLEF------------LLYVLATPTHIFLDKE   64 (120)
T ss_dssp             EEEETTSCEEEEEEECCGGGGGCCEEEEEECTT--------------TCCEE------------EEEECSSCCCEEEESS
T ss_pred             EEecCCCcEEEEEEEecccccCCcccEEEeCCc--------------ccccc------------cccccccccceeeecc
Confidence            4556899999999987643  345889885322              11111            111110 0000   01


Q ss_pred             CCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        238 RFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       238 ~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ..+..++.. ......|.|.++..+|+|.|.|.+.
T Consensus        65 ~~r~~~s~~~~~~~~~L~I~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          65 YKKMEASKNPSASTSILTIYSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             SSEEEEEECCTTTEEEEEECSCCGGGCSEEEEEEC
T ss_pred             ccccccccccccccccccccccccccceeEEEEEc
Confidence            112333322 1234579999999999999999764

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.53  E-value=0.00025  Score=46.78  Aligned_cols=65  Identities=26%  Similarity=0.408  Sum_probs=37.7

Q ss_pred             CCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEcccccCC
Q psy15667         16 PGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISHVTVED   74 (286)
Q Consensus        16 ~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~~~~~D   74 (286)
                      +|++|+|+|.+.|...  --+.|.|.  |+.|      . .          ..|+.++..   .......|.|.+++.+|
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D---~s~~t~~L~~~sL~~eD   77 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVD---KPSSTAYMQLSSLTSED   77 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC-------CEEEEEECCC---C
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEecc---ccccEEEeeeeeccccc
Confidence            6999999999998543  35778863  3322      1 1          234443321   11223459999999999


Q ss_pred             CeEEEEEEE
Q psy15667         75 GGEYACVAE   83 (286)
Q Consensus        75 ~G~Y~C~a~   83 (286)
                      +++|.|...
T Consensus        78 TAvYYCAr~   86 (103)
T d1oari_          78 SAVYYCARM   86 (103)
T ss_dssp             CSEEEEEEE
T ss_pred             cEEEEeEEE
Confidence            999999653

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.53  E-value=0.00021  Score=49.02  Aligned_cols=70  Identities=29%  Similarity=0.502  Sum_probs=45.5

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C------C----------CCeeEeceEEecccceeEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P------T----------NNRFVIGQFVSGHGDVISH   64 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~------~----------~~~~~~~~~~~~~~~~~~~   64 (286)
                      -.++++|+++.|+|.+.|..  .-.+.|++.  |+.|      .      .          ..|+.++..   .......
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d---~s~~~~~   85 (127)
T d1i3ua_           9 GGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRD---NAKNTVN   85 (127)
T ss_dssp             CEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEE---GGGTEEE
T ss_pred             CceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEecc---CCceEEE
Confidence            35788999999999998753  235678863  2211      0      0          124443321   1122345


Q ss_pred             EEEcccccCCCeEEEEEEE
Q psy15667         65 VNISHVTVEDGGEYACVAE   83 (286)
Q Consensus        65 l~I~~~~~~D~G~Y~C~a~   83 (286)
                      |+|.+++.+|++.|.|.+.
T Consensus        86 L~i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          86 LQMNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeeecccccceeEEEEEEE
Confidence            9999999999999999754

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00018  Score=48.65  Aligned_cols=84  Identities=12%  Similarity=0.231  Sum_probs=47.0

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC--CCCCC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL--SPRFP  240 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~--~~~~~  240 (286)
                      .+.+.+|++++|.|...+ -...+.|.+..+.              ....+.--.           ..++...  ....+
T Consensus         8 ~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg--------------~~~~~l~~~-----------~~~~~~~~~~~~~~   61 (113)
T d2ntsp1           8 YLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPG--------------QGLQFLFEY-----------FNETQRNKGNFPGR   61 (113)
T ss_dssp             EEEEETTCCEEEEEECST-TCCEEEEEEEETT--------------TEEEEEEEE-----------ETTEEEEECSCCTT
T ss_pred             eEEECCCCCEEEEEEECC-CCCEEEEEEeecc--------------cceEeeeee-----------cccccccccccccc
Confidence            356678999999998654 2356889884221              111111100           0011100  01112


Q ss_pred             ceeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ............|.|.++.++|+|.|.|.+..
T Consensus        62 ~~~~~~~~~~~~L~I~~~~~~Dsa~YyCA~~~   93 (113)
T d2ntsp1          62 FSGRQFSNSRSEMNVSTLELGDSALYLCASSL   93 (113)
T ss_dssp             EEEEECTTSCEEEEECSCCGGGCEEEEEEEES
T ss_pred             eeeccCcCCeeEEEECCCCcccceeeeeeeeC
Confidence            22222223345799999999999999998764

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.52  E-value=0.00065  Score=46.11  Aligned_cols=24  Identities=25%  Similarity=0.376  Sum_probs=20.9

Q ss_pred             CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        249 FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       249 ~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ....|.|.++..+|+|.|.|.+..
T Consensus        73 ~~~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          73 SRVNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             TEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             CEEEEEhhcCccccCEeEEEEEec
Confidence            356899999999999999998764

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00021  Score=48.59  Aligned_cols=69  Identities=22%  Similarity=0.382  Sum_probs=45.2

Q ss_pred             ccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC-----------CCeeEeceEEecccceeEEEEEccc
Q psy15667         12 QTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT-----------NNRFVIGQFVSGHGDVISHVNISHV   70 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~-----------~~~~~~~~~~~~~~~~~~~l~I~~~   70 (286)
                      .++++|+++.|.|.+.|.-  ...+.|.+.  |+.|      ..           ..|+.++..   +......|.|.++
T Consensus        10 ~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD---~s~~t~~Lqm~sL   86 (125)
T d1op3h1          10 GLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRD---DLEDFVYLQMHKM   86 (125)
T ss_dssp             EEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEE---TTTTEEEEEECSC
T ss_pred             ceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEecc---CccceEeeeeecc
Confidence            5789999999999998742  235678763  2221      11           234544321   1222345899999


Q ss_pred             ccCCCeEEEEEEE
Q psy15667         71 TVEDGGEYACVAE   83 (286)
Q Consensus        71 ~~~D~G~Y~C~a~   83 (286)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (125)
T d1op3h1          87 RVEDTAIYYCARK   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCccceeEeEeec
Confidence            9999999999654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.52  E-value=0.0002  Score=49.09  Aligned_cols=72  Identities=19%  Similarity=0.398  Sum_probs=46.8

Q ss_pred             cccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ..-.++++|+++.|+|.+.|..  .-.+.|.+.  |+.|      . .          ..|+.++..   +......|.|
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D---~s~~tv~L~~   82 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTAD---QATSTAYMEL   82 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEE
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEecc---CCccEEEEEe
Confidence            3445789999999999999853  335678763  2221      1 0          134444321   2222345999


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|+++|.|...
T Consensus        83 ~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARD   98 (130)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCCCcEEEEEEee
Confidence            9999999999999654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.52  E-value=0.00011  Score=50.95  Aligned_cols=84  Identities=17%  Similarity=0.310  Sum_probs=51.7

Q ss_pred             CCeeEeccccc-cccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCee----EeceEEecccc--eeEEEEEccccc
Q psy15667          2 PPILTYSFIEQ-TLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRF----VIGQFVSGHGD--VISHVNISHVTV   72 (286)
Q Consensus         2 ~p~~~~~~~~~-~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~----~~~~~~~~~~~--~~~~l~I~~~~~   72 (286)
                      ||.+..-.+.. .+..++.++|.|.+.|. |. -.|+|++||+.+......    ........++.  ..+.|.|..-..
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~W   83 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKEVHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATFW   83 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEEECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEEccCcEEecceeeeecccCCCCeEEEEEEEEECHHHh
Confidence            78877654433 56678889999999984 43 378999999987532111    00000001111  123477777776


Q ss_pred             CCCe-EEEEEEEcC
Q psy15667         73 EDGG-EYACVAENR   85 (286)
Q Consensus        73 ~D~G-~Y~C~a~n~   85 (286)
                      .+.| .|+|.+.-.
T Consensus        84 ~~~g~~ytC~V~H~   97 (127)
T d1ogae2          84 QNPRNHFRCQVQFY   97 (127)
T ss_dssp             TCTTCEEEEEEEEC
T ss_pred             CCCCCEEEEEEEEC
Confidence            6766 799988753

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.52  E-value=0.00016  Score=49.06  Aligned_cols=70  Identities=27%  Similarity=0.485  Sum_probs=44.8

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|.|.+.|..  .-.+.|.+.  |+.      |..           ..|+.++..   .......|.|.+
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D---~s~~~~~L~i~s   85 (121)
T d1ol0a_           9 GGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRD---NSKNTLYLQMNS   85 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEecc---ccceeEEeeeee
Confidence            34679999999999998743  234678763  222      211           124433321   112234599999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1ol0a_          86 LRAEDTAVYYCARE   99 (121)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccccceEEEEEEe
Confidence            99999999999543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.51  E-value=0.00014  Score=49.59  Aligned_cols=70  Identities=26%  Similarity=0.439  Sum_probs=45.2

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEE------cC-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFE------LP-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~------l~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|+|.+.|...  ..+.|.+.  |+.      |. .          ..|+.++..   +......|.|.+
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D---~s~nt~~L~~~~   85 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRD---NAKNSLYLQMNS   85 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEecc---CCCcEEEeeeee
Confidence            357899999999999998532  35678763  222      21 1          123333321   112234589999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|+++|.|...
T Consensus        86 L~~eDtavYYCAr~   99 (126)
T d1dfbh1          86 LRAEDMALYYCVKG   99 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             eccCcceEEEEEec
Confidence            99999999999643

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.50  E-value=0.00021  Score=48.59  Aligned_cols=68  Identities=21%  Similarity=0.368  Sum_probs=44.7

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      ..++++|+++.|+|.+.|...  -.+.|.+.  |+.|      . .          ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD---~s~~t~yL~~~~   85 (124)
T d2b1hh1           9 AEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSAD---RSTNTAHLQWSS   85 (124)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEE---TTTTEEEEEESS
T ss_pred             CceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeec---CCCcEEEEeeec
Confidence            357899999999999998543  24678762  2211      1 1          234444321   122234599999


Q ss_pred             cccCCCeEEEEE
Q psy15667         70 VTVEDGGEYACV   81 (286)
Q Consensus        70 ~~~~D~G~Y~C~   81 (286)
                      ++.+|++.|.|.
T Consensus        86 L~~eDTA~YYCA   97 (124)
T d2b1hh1          86 LKPSDTALYYCA   97 (124)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccccceEEEEe
Confidence            999999999994

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00026  Score=48.26  Aligned_cols=70  Identities=26%  Similarity=0.469  Sum_probs=45.2

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|+|.+.|.-  .-.+.|.+.  |+.|      . .          ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD---~s~~t~yL~~~s   85 (127)
T d2fx7h1           9 AEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITAD---RSTSTAYLELNS   85 (127)
T ss_dssp             CEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEecc---CccceEeeeecc
Confidence            34678999999999999843  335678753  2221      1 0          234444321   112234589999


Q ss_pred             cccCCCeEEEEEEE
Q psy15667         70 VTVEDGGEYACVAE   83 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~   83 (286)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTavYYCAR~   99 (127)
T d2fx7h1          86 LRPEDTAVYYCARE   99 (127)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeec
Confidence            99999999999643

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00023  Score=48.37  Aligned_cols=69  Identities=25%  Similarity=0.431  Sum_probs=44.1

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------C-CC----------CeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------P-TN----------NRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~-~~----------~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|++++|.|.+.|..  ...+.|++.  |+.|      . .+          .|+.++..   .......|.|.+
T Consensus         9 ~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D---~s~~t~~L~i~~   85 (121)
T d1j05b_           9 AELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITAD---TSSNTAYLQLTS   85 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEE---GGGTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEee---cCCceeeecccc
Confidence            45689999999999988743  235678763  3221      1 11          23333211   111223599999


Q ss_pred             cccCCCeEEEEEE
Q psy15667         70 VTVEDGGEYACVA   82 (286)
Q Consensus        70 ~~~~D~G~Y~C~a   82 (286)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (121)
T d1j05b_          86 LTSEDTAVYYCAP   98 (121)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCcceEEEeEe
Confidence            9999999999954

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.45  E-value=0.00094  Score=43.74  Aligned_cols=52  Identities=15%  Similarity=0.311  Sum_probs=29.7

Q ss_pred             CeEEEEeCCeeCCCCCCc--eeeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        224 LTIRWLKDGKPLSPRFPV--NVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~--~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ..++|++||..+......  .....+..-..+....+..++...|+|.+....-
T Consensus        35 i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~~~~~~~~~ytC~V~H~sl   88 (98)
T d1d5mb1          35 IEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLETVPRSGEVYTCQVEHPSV   88 (98)
T ss_dssp             CEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEECCCCTTCEEEEEEECTTC
T ss_pred             cEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEeeEcCCCCCEEEEEEEECCC
Confidence            567888888877543110  0111111112233345678889999999987643

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=97.45  E-value=0.00077  Score=46.21  Aligned_cols=83  Identities=20%  Similarity=0.274  Sum_probs=48.8

Q ss_pred             eEEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEE-EeCCeeC-C---
Q psy15667        164 VTAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRW-LKDGKPL-S---  236 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W-~~~g~~~-~---  236 (286)
                      ++..+|++++|.|.+.|..  ...+.|.+..|.              +            .+.-+.+ ..++... .   
T Consensus        11 ~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg--------------~------------~~~~l~~~~~~~~~~~~~~~   64 (123)
T d1hxmb1          11 STKTLSKTARLECVVSGITISATSVYWYRERPG--------------E------------VIQFLVSISYDGTVRKESGI   64 (123)
T ss_dssp             EEEETTCCEEEEEEEESSCTTTSCEEEEEECTT--------------S------------CCEEEEEECSSSCEEECTTC
T ss_pred             EEeCCCCCEEEEEEEcCCCcccCeEEEEEECCC--------------C------------CceEeeeccccccccccccc
Confidence            4556899999999998753  346899985322              1            1111111 1112111 0   


Q ss_pred             CCCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        237 PRFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       237 ~~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...++.+.... .....|.|.++.++|+|.|.|.+..
T Consensus        65 ~~~rf~~~~~~~~~~~~L~i~~l~~~Dsa~YyCA~~~  101 (123)
T d1hxmb1          65 PSGKFEVDRIPETSTSTLTIHNVEKQDIATYYCALWE  101 (123)
T ss_dssp             CTTSEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceeEEeeeccccceeecccccccccCcEEEEeeeC
Confidence            12234443322 2345799999999999999997644

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.45  E-value=0.00089  Score=43.82  Aligned_cols=54  Identities=26%  Similarity=0.338  Sum_probs=29.4

Q ss_pred             CCeEEEEeCCeeCCCCCC-ceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        223 PLTIRWLKDGKPLSPRFP-VNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       223 ~~~~~W~~~g~~~~~~~~-~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      ...++|++||..+..... ...... +..=.......+..++...|+|.+......
T Consensus        33 ~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          33 EVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALTPSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEECCCTTCCEEEEEECTTSS
T ss_pred             CCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcCCCCCCEEEEEEEeCCCC
Confidence            456889999887754321 111111 110011122245567778999999876543

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.43  E-value=0.00021  Score=48.41  Aligned_cols=71  Identities=23%  Similarity=0.328  Sum_probs=46.0

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-C----------CCeeEeceEEecccceeEEEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-T----------NNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-~----------~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      ..-.++++|+++.|+|.+.|..-  -.+.|.+.  |+.|      . .          ..|+.++..   +......|.|
T Consensus         7 sG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D---~s~~t~~L~~   83 (124)
T d1yedb1           7 SGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTAD---KSSSTAYMQL   83 (124)
T ss_dssp             CCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEE
T ss_pred             eCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEcc---CCcceEEecc
Confidence            34457899999999999998532  35678762  2222      1 1          134444321   1122345999


Q ss_pred             cccccCCCeEEEEEE
Q psy15667         68 SHVTVEDGGEYACVA   82 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a   82 (286)
                      .+++.+|++.|.|..
T Consensus        84 ~sL~~eDTAvYYCAR   98 (124)
T d1yedb1          84 SSLKSEDSAVYFCTR   98 (124)
T ss_dssp             ESCCGGGCEEEEEEE
T ss_pred             cccCCCcceEEEecc
Confidence            999999999999954

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.43  E-value=0.0013  Score=44.55  Aligned_cols=25  Identities=12%  Similarity=0.188  Sum_probs=21.3

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ...|.|.++..+|+|.|.|.+....
T Consensus        76 ~~~L~I~~l~~~DsavYyCa~~~~~  100 (118)
T d1yjdc1          76 SVTFYLQNLYVNQTDIYFCKIEVMY  100 (118)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEEEE
T ss_pred             eEEEEECCCCcccCeEEEEEEeccc
Confidence            4579999999999999999876543

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.41  E-value=0.0012  Score=44.30  Aligned_cols=83  Identities=20%  Similarity=0.261  Sum_probs=46.7

Q ss_pred             eEEecCCCEEEEeeEeeecCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCC--CCCc
Q psy15667        164 VTAIDGEGLSIKCPVAGYPIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSP--RFPV  241 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~--~~~~  241 (286)
                      +.+.+|++++|.|..... ...+.|.+..+              |....+......           .......  ..+.
T Consensus         9 ~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~--------------g~~p~~l~~~~~-----------~~~~~~~~~~~~~   62 (112)
T d2bnub1           9 QVLKTGQSMTLQCAQDMN-HEYMSWYRQDP--------------GMGLRLIHYSVG-----------AGITDQGEVPNGY   62 (112)
T ss_dssp             EEEETTCCEEEEEEESSC-CSEEEEEEEET--------------TTEEEEEEEEEE-----------TTEEEECSSCTTC
T ss_pred             EEECCCCCEEEEEEEECC-ccceEeccccc--------------ccCccceeeEec-----------cCceecCccccce
Confidence            456789999999987543 45688988432              222222211110           0110000  1112


Q ss_pred             eeeecCCCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        242 NVSDLDSFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       242 ~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...........|.|.++.++|+|.|.|.+..
T Consensus        63 ~~~~~~~~~~~L~I~~~~~~DsavYyCA~~~   93 (112)
T d2bnub1          63 NVSRSTTEDFPLRLLSAAPSQTSVYFCASSY   93 (112)
T ss_dssp             EECCSSSSBCCEEESSCCGGGCEEEEEEEEC
T ss_pred             eEecCCCCEEEEEECCCCHHHCEEEEEeecC
Confidence            2222223345799999999999999997753

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00066  Score=45.13  Aligned_cols=86  Identities=17%  Similarity=0.258  Sum_probs=45.8

Q ss_pred             CCeeE-eccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccC--C
Q psy15667          2 PPILT-YSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVE--D   74 (286)
Q Consensus         2 ~p~~~-~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~--D   74 (286)
                      ||.+. +.+........+.++|.|.+.|. |. -.|+|.+||..+..... ..... ...+.  ..+.|+|..-...  .
T Consensus         5 ~P~V~~l~p~~~~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~-~~~~~-~~~gtys~~S~L~v~~~eW~~~~   82 (105)
T d1dn0b2           5 APTLFPLVSCENSPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTR-GFPSV-LRGGKYAATSQVLLPSKDVMAGT   82 (105)
T ss_dssp             CCEEEEEECC------CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEE-ECCCE-EETTEEEEEEEEEECTTCC---C
T ss_pred             CCeEEeECCCccccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEE-cceEE-ccCCCEEEEEEEEEcHHHhccCC
Confidence            45443 34444455667889999999984 54 47999999876543211 11111 11221  1234666555542  2


Q ss_pred             CeEEEEEEEcCCEEE
Q psy15667         75 GGEYACVAENRAGTC   89 (286)
Q Consensus        75 ~G~Y~C~a~n~~g~~   89 (286)
                      ...|+|.+....+..
T Consensus        83 ~~~ytC~V~H~~~~~   97 (105)
T d1dn0b2          83 DEHVVCKVQHPNGNK   97 (105)
T ss_dssp             CCEEEEEEECTTCCE
T ss_pred             CCEEEEEEEECCCCE
Confidence            248999998765543

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.39  E-value=7.9e-05  Score=48.95  Aligned_cols=65  Identities=15%  Similarity=0.246  Sum_probs=39.5

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +..|+.+.|.|...  .+...+.++|+|........  ............|.+|+.+|+|.|.|.-...
T Consensus        15 V~~G~~VTL~C~~~--~~~~~f~L~keg~~~~~~~~--~~~~~~~~a~F~i~~v~~~~~G~Y~C~y~~~   79 (96)
T d1ugna1          15 ITQGSPVTLRCQGG--QETQEYRLYREKKTAPWITR--IPQELVKKGQFPIPSITWEHTGRYRCYYGSD   79 (96)
T ss_dssp             EETTCCEEEEEECC--TTCCCEEEEESSSCCHHHHT--SCHHHHTTTEEEESSCCGGGCEEEEEEEEET
T ss_pred             cCCCCcEEEEEeCC--CCCCEEEEEECCCCcccEEE--ccCCCCCEEEEEEEecCHHHCCeEEEEEeCC
Confidence            45667777777642  34456778888863210000  0000112346889999999999999987643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.39  E-value=0.00045  Score=47.43  Aligned_cols=71  Identities=21%  Similarity=0.405  Sum_probs=45.7

Q ss_pred             cccccCCCcEEEEEEeecCCCC--eeEEeeC--CEEc------C-----------CCCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNPTP--DIGWTLD--GFEL------P-----------TNNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~p--~v~W~~~--~~~l------~-----------~~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|+|.+.|...-  .+.|.+.  |+.|      .           -..|+.++..   +......|.|.+
T Consensus         8 ~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D---~s~~t~~L~~~~   84 (133)
T d1rzfh1           8 AEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISAD---ESTRTVYLHLRG   84 (133)
T ss_dssp             CEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEec---cCcceeEEeecc
Confidence            3578999999999999985432  4667652  2211      0           1234444321   122234589999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|+++|.|....
T Consensus        85 L~~eDtA~YYCAr~~   99 (133)
T d1rzfh1          85 LRSDDTAVYYCASNS   99 (133)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             CCCCCCEEEEeeecc
Confidence            999999999995543

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00054  Score=46.62  Aligned_cols=70  Identities=17%  Similarity=0.131  Sum_probs=40.8

Q ss_pred             ccccCCCcEEEEEEeecCCCC---eeEEeeC-CEE---c------------CCCCeeEeceEEecccceeEEEEEccccc
Q psy15667         12 QTLQPGPAVSLKCIASGNPTP---DIGWTLD-GFE---L------------PTNNRFVIGQFVSGHGDVISHVNISHVTV   72 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p---~v~W~~~-~~~---l------------~~~~~~~~~~~~~~~~~~~~~l~I~~~~~   72 (286)
                      ..+.+|++++|.|...+.-..   .+.|++. +..   +            ....++....  . .......|.|.+++.
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~~L~I~~l~~   86 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDG--K-LGNESVTFYLQNLYV   86 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEE--E-ECSSEEEEEEESCCG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEE--E-CCCCeEEEEECCCCc
Confidence            567789999999987654322   2345542 111   1            0111222111  1 112234699999999


Q ss_pred             CCCeEEEEEEEc
Q psy15667         73 EDGGEYACVAEN   84 (286)
Q Consensus        73 ~D~G~Y~C~a~n   84 (286)
                      +|+|.|.|.+..
T Consensus        87 ~DsavYyCa~~~   98 (118)
T d1yjdc1          87 NQTDIYFCKIEV   98 (118)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             ccCeEEEEEEec
Confidence            999999997643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.38  E-value=0.00011  Score=47.85  Aligned_cols=66  Identities=17%  Similarity=0.255  Sum_probs=47.3

Q ss_pred             ccccCCCcEEEEEEeecCCCCeeE-EeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         12 QTLQPGPAVSLKCIASGNPTPDIG-WTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~p~v~-W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      +.+.+|+.+++.|.+. +|..+++ |..++..+..+.....  + ....    -++|+++...|+|.|.|.|...
T Consensus        15 V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g~~v~--~-Dpk~----Gf~I~~~~~~~~g~y~C~a~~~   81 (95)
T d1fltx_          15 IHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDGKRII--W-DSRK----GFIISNATYKEIGLLTCEATVN   81 (95)
T ss_dssp             EEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCSSSEE--E-ETTT----EEEESSCCGGGCEEEEEEEEET
T ss_pred             EEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCCCEEE--E-CCCC----CEEEeCCCcccCeEEEEEEEEC
Confidence            4678999999999998 6777765 6657776654433221  1 1111    2789999999999999999654

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.36  E-value=0.00012  Score=48.83  Aligned_cols=71  Identities=15%  Similarity=0.302  Sum_probs=42.3

Q ss_pred             cccCCCcEEEEEEeecC-CC---CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         13 TLQPGPAVSLKCIASGN-PT---PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~-p~---p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      .+..+.+++|.|.+.+. |.   -+++|.+||..+...... . .....++.  ..+.|+|..-.....-.|+|.+...
T Consensus        12 ~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~~~~~-~-~~~~~~gtys~~S~L~v~~~~W~~g~~~tC~V~H~   88 (103)
T d1i1ca1          12 VLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTH-A-PEKQSNSTLRSVSELPIVERDWLNGKTFKCKVNSG   88 (103)
T ss_dssp             HTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEEC-C-CEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECS
T ss_pred             HhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccCCEEC-C-cEECCCCCEEEEEEEEECHHHhcCCCEEEEEEEeC
Confidence            45678889999999873 43   478899999876543211 0 11111221  1233555544444445799999864

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.35  E-value=0.00028  Score=48.34  Aligned_cols=71  Identities=24%  Similarity=0.414  Sum_probs=45.6

Q ss_pred             ccccccCCCcEEEEEEeecCC--CCeeEEeeC--CEEc------CC-----------CCeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFEL------PT-----------NNRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~l------~~-----------~~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      .-.++++|+++.|+|.+.|..  ...+.|.+.  |+.|      ..           ..|+.++..   +......|.|.
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D---~s~~t~yL~~~   84 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITAD---ESTSTAYMELS   84 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEE---TTTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecc---cccceEEeeee
Confidence            345689999999999998753  345778763  3222      11           123333321   11123358899


Q ss_pred             ccccCCCeEEEEEEE
Q psy15667         69 HVTVEDGGEYACVAE   83 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a~   83 (286)
                      +++.+|++.|.|...
T Consensus        85 sL~~eDtA~YYCAr~   99 (130)
T d1rzga1          85 SLRSEDTAVFYCASP   99 (130)
T ss_dssp             SCCGGGCEEEEEEEC
T ss_pred             ecCCCccEEEEEEEe
Confidence            999999999999653

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.35  E-value=0.00029  Score=46.60  Aligned_cols=81  Identities=16%  Similarity=0.245  Sum_probs=45.8

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeec-CCC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeE
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASG-NPT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGE   77 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g-~p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~   77 (286)
                      +|.+..-.+......++.++|.|.+.| .|. -.|.|.+|+.....  .  .......++.  ..+.|+|..-... .|.
T Consensus         5 aP~V~~l~p~~~~~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~~--~--~~~~~~~~g~~s~~S~L~v~~~~w~-~~~   79 (101)
T d1kcvh2           5 APSVFPLVPGSATAAASAVTLGCLVKGYFPEPVTVAWNEGALSSGV--L--TVSAVLQSGLYTLSSNTTVASGTWP-SAS   79 (101)
T ss_dssp             CCEEEEECCCSCCTTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTTE--E--ECCCEEETTEEEEEEEEEEETTTTT-TSC
T ss_pred             CCEEEeECCCccccCCCeEEEEEEEEEEeCCCCEEEEecCCCcccc--e--eeeeecCCCCEEEEEEEEEchhhcC-CCe
Confidence            454443322233346889999999998 343 48999988754210  0  0000111221  2345777666553 578


Q ss_pred             EEEEEEcCCE
Q psy15667         78 YACVAENRAG   87 (286)
Q Consensus        78 Y~C~a~n~~g   87 (286)
                      |+|.+.....
T Consensus        80 ytC~V~H~~~   89 (101)
T d1kcvh2          80 VTCLVAHPKS   89 (101)
T ss_dssp             CEEEEEEGGG
T ss_pred             EEEEEEeCCC
Confidence            9999986543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.35  E-value=0.00043  Score=47.47  Aligned_cols=70  Identities=24%  Similarity=0.481  Sum_probs=45.5

Q ss_pred             cccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C-------------CCCeeEeceEEecccceeEEEEE
Q psy15667         11 EQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P-------------TNNRFVIGQFVSGHGDVISHVNI   67 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~-------------~~~~~~~~~~~~~~~~~~~~l~I   67 (286)
                      -.++++|+++.|.|.+.|...  ..+.|.+.  |+.|      .             -..|+.++..   +......|.|
T Consensus         9 ~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D---~s~nt~~Lq~   85 (131)
T d3c2ah1           9 GGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRD---DSKNTLYLQM   85 (131)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEE---GGGTEEEEEE
T ss_pred             CceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecc---cccceeecce
Confidence            357899999999999987432  35667753  2211      1             0234444321   1122345999


Q ss_pred             cccccCCCeEEEEEEE
Q psy15667         68 SHVTVEDGGEYACVAE   83 (286)
Q Consensus        68 ~~~~~~D~G~Y~C~a~   83 (286)
                      .+++.+|+++|.|...
T Consensus        86 ~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          86 NSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccccCCceEEEEecc
Confidence            9999999999999755

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.35  E-value=0.00039  Score=47.48  Aligned_cols=71  Identities=24%  Similarity=0.448  Sum_probs=45.3

Q ss_pred             cccccCCCcEEEEEEeecCC--CCeeEEeeC--CEE------cCC-----------CCeeEeceEEecccceeEEEEEcc
Q psy15667         11 EQTLQPGPAVSLKCIASGNP--TPDIGWTLD--GFE------LPT-----------NNRFVIGQFVSGHGDVISHVNISH   69 (286)
Q Consensus        11 ~~~~~~G~~~~l~C~~~g~p--~p~v~W~~~--~~~------l~~-----------~~~~~~~~~~~~~~~~~~~l~I~~   69 (286)
                      -.++++|+++.|.|.+.|..  ...+.|.+.  |+.      |..           ..|+.++..   .......|.|.+
T Consensus         9 ~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D---~s~~t~yL~~~~   85 (127)
T d2fb4h1           9 GGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRN---DSKNTLFLQMDS   85 (127)
T ss_dssp             CCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEE---TTTTEEEEEECS
T ss_pred             CceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEecc---CCccEEEeeeee
Confidence            35679999999999998842  234667763  222      111           123433321   112234589999


Q ss_pred             cccCCCeEEEEEEEc
Q psy15667         70 VTVEDGGEYACVAEN   84 (286)
Q Consensus        70 ~~~~D~G~Y~C~a~n   84 (286)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          86 LRPEDTGVYFCARDG  100 (127)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             eeecceeEEEEEEec
Confidence            999999999996543

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.33  E-value=0.0015  Score=43.96  Aligned_cols=84  Identities=25%  Similarity=0.300  Sum_probs=46.7

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|.              ..+.+.-....+.    -..+.+.    -..++.+
T Consensus        12 vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PG--------------kglewv~~i~~~~----~~~y~~~----~kgRfti   69 (120)
T d1dn0b1          12 LKPSETLSLTCAVYGGSFSDYYWSWIRQPPG--------------KGLEWIGEINHSG----STNYNPS----LKSRVTI   69 (120)
T ss_dssp             ECTTSCEEEEEEEESSCCSSCCEEEEEECTT--------------SCCEEEEEECTTC----CEEECTT----TTTTEEE
T ss_pred             ECCCCCEEEEEEEccccCccCcceeeeECCC--------------ccceeeeeccccc----cchhccc----eeeeeEE
Confidence            457999999999998654  35889885432              1111111000000    0001000    1224444


Q ss_pred             eecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        244 SDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       244 ~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.+. .....|.|.+++.+|++.|.| |+.
T Consensus        70 S~D~s~nt~~L~i~~l~~eDtA~YYC-Ar~   98 (120)
T d1dn0b1          70 SVDTSKNQFSLKLSSVTAADTAVYYC-ARP   98 (120)
T ss_dssp             EEETTTTEEEEEECSCCGGGCEEEEE-EEC
T ss_pred             eccCchheecccccccccccccEEEE-Eee
Confidence            4432 223469999999999999999 443

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.32  E-value=0.00019  Score=48.54  Aligned_cols=72  Identities=24%  Similarity=0.369  Sum_probs=45.7

Q ss_pred             cccccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------C---C----------CCeeEeceEEecccceeEEE
Q psy15667          9 FIEQTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------P---T----------NNRFVIGQFVSGHGDVISHV   65 (286)
Q Consensus         9 ~~~~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~---~----------~~~~~~~~~~~~~~~~~~~l   65 (286)
                      ....++++|+++.|+|.+.|.-.  -.+.|.+.  |+.|      .   .          ..|+.++..   .......|
T Consensus         7 SG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD---~s~nt~yL   83 (121)
T d1nfdf1           7 SGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRD---DSRNSIYL   83 (121)
T ss_dssp             ECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEEC---TTTSEEEE
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccc---cccceeec
Confidence            34467899999999999998533  24578763  3221      1   1          123322211   11223459


Q ss_pred             EEcccccCCCeEEEEEEE
Q psy15667         66 NISHVTVEDGGEYACVAE   83 (286)
Q Consensus        66 ~I~~~~~~D~G~Y~C~a~   83 (286)
                      .|.+++.+|+++|.|...
T Consensus        84 ~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          84 QMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             EEESCCGGGCEECEEEEE
T ss_pred             eecccCCCcceEEEEecc
Confidence            999999999999999643

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.31  E-value=0.00031  Score=43.97  Aligned_cols=74  Identities=20%  Similarity=0.305  Sum_probs=44.4

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCC-CCCeEEEEEEEe-cccceeeEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSA-AHSGEYTCVASN-TAAQARYSSKLQV  285 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~-~d~G~Y~C~a~N-~~g~~~~~~~L~V  285 (286)
                      |..+.|+|..   .....|.|.|++..+.....-.....  ....|.+.+.+. +++|.|.|.+.. ......+-..|.+
T Consensus        10 GTtV~LTCP~---~~~~~i~W~~n~~~~~~~~~~~~~~~--~~~~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~LYLKA   84 (91)
T d1xiwa_          10 GTTVILTCPQ---YPGSEILWQHNDKNIGGDEDDKNIGS--DEDHLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLRA   84 (91)
T ss_dssp             TTEEEEECSS---CTTSCEEEEETTEEESSSCSCTTEEE--ETTEEEETTCCHHHHCEEEEEEETTSCGGGCCEEEEEEE
T ss_pred             CCEEEEECCC---CCCCceeeeeccccccCCCccccccc--ccceEEecccCccccCceEEEEcCCCCCCCcceEEEEEe
Confidence            5666777742   24467999999987753221100000  023577788765 899999999854 3344455566655


Q ss_pred             C
Q psy15667        286 K  286 (286)
Q Consensus       286 ~  286 (286)
                      |
T Consensus        85 R   85 (91)
T d1xiwa_          85 R   85 (91)
T ss_dssp             C
T ss_pred             E
Confidence            3

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.31  E-value=9e-05  Score=49.93  Aligned_cols=69  Identities=20%  Similarity=0.407  Sum_probs=44.6

Q ss_pred             ccccCCCcEEEEEEeecCCC--CeeEEeeC--CEEc------CCC----------CeeEeceEEecccceeEEEEEcccc
Q psy15667         12 QTLQPGPAVSLKCIASGNPT--PDIGWTLD--GFEL------PTN----------NRFVIGQFVSGHGDVISHVNISHVT   71 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~p~--p~v~W~~~--~~~l------~~~----------~~~~~~~~~~~~~~~~~~l~I~~~~   71 (286)
                      .++++|+++.|+|.+.|...  -.+.|.+.  |+.+      ..+          .|+.++..   .......|.|.+++
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D---~s~~tv~L~~~~L~   86 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRD---TSKNQVFLKMNSLQ   86 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEE---GGGTEEECCEESCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccc---cccchhhcceeccC
Confidence            56889999999999998543  35668763  3322      211          23333221   11123358899999


Q ss_pred             cCCCeEEEEEEE
Q psy15667         72 VEDGGEYACVAE   83 (286)
Q Consensus        72 ~~D~G~Y~C~a~   83 (286)
                      .+|+++|.|...
T Consensus        87 ~eDTAvYyCAr~   98 (116)
T d1fn4b1          87 TDDTGTYYCTRD   98 (116)
T ss_dssp             CCCCEEEEEEEE
T ss_pred             CCCCEEEEEEee
Confidence            999999999543

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.30  E-value=0.0028  Score=39.30  Aligned_cols=77  Identities=13%  Similarity=0.311  Sum_probs=51.4

Q ss_pred             cccCCCcEEEEEEeec-CCCCeeEEee-CCE---EcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCE
Q psy15667         13 TLQPGPAVSLKCIASG-NPTPDIGWTL-DGF---ELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAG   87 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g-~p~p~v~W~~-~~~---~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g   87 (286)
                      ++..|+.+.|.|-+.- --.|+|+|-| +|+   +|........+. .....-....|-+..+-.+|.|.|+|.|.-..+
T Consensus        14 s~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW-~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s~   92 (104)
T d1xaua_          14 SAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSW-EENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ   92 (104)
T ss_dssp             EECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEE-ECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             eEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccch-hhcCCeeEEEEEeeeeeecCCCceEEecCCChh
Confidence            6789999999998875 3468999987 442   454322222221 111112234477889999999999999987776


Q ss_pred             EEE
Q psy15667         88 TCE   90 (286)
Q Consensus        88 ~~~   90 (286)
                      -++
T Consensus        93 vie   95 (104)
T d1xaua_          93 VIN   95 (104)
T ss_dssp             EEE
T ss_pred             hee
Confidence            554

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.27  E-value=0.001  Score=44.51  Aligned_cols=99  Identities=15%  Similarity=0.255  Sum_probs=52.0

Q ss_pred             eEEecCCCEEEEeeEeee--cCCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCc
Q psy15667        164 VTAIDGEGLSIKCPVAGY--PIEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPV  241 (286)
Q Consensus       164 ~~~~~g~~~~l~c~~~~~--p~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~  241 (286)
                      ..+.+|++++|.|.+++.  ....+.|-+..|...             ...+... ..+.... -...++        ++
T Consensus         5 ~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~-------------~~~li~~-~~~~~~~-~~~~~g--------R~   61 (110)
T d1u9ka_           5 YDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKE-------------PLTLVVT-QRPFTRP-SEVHMG--------KF   61 (110)
T ss_dssp             EEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSC-------------CEEEEEC-CSSTTSC-EEEEET--------TE
T ss_pred             CcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCC-------------EEEEEec-CCCceee-chhhCc--------EE
Confidence            456689999999998764  345677887432211             0111110 0000000 011111        23


Q ss_pred             eeeecC-CCeeeEEEcccCCCCCeEEEEEEEecccc---eeeEEEEEE
Q psy15667        242 NVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAAQ---ARYSSKLQV  285 (286)
Q Consensus       242 ~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~---~~~~~~L~V  285 (286)
                      .++... ...-.|+|.+++.+|+|.|.|.....-..   ....+.|.|
T Consensus        62 sis~d~~~~~~~lti~~L~~eDsa~YyCa~~~~~~~~~~~~~~~~L~V  109 (110)
T d1u9ka_          62 TLKHDPSEAMLQVQMTDLQVTDSGLYRCVIYHPPNDPVVLFHPVRLVV  109 (110)
T ss_dssp             EEEEEGGGTEEEEEECSCCGGGCEEEEEEEECTTSCCEECSCCEEEEE
T ss_pred             EEEEECCCCEEEEEECccccCCCEEEEEEEeCCCCCCEEEECCEEEEE
Confidence            333321 22346999999999999999986443321   112455665

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.23  E-value=0.00059  Score=45.12  Aligned_cols=82  Identities=18%  Similarity=0.208  Sum_probs=43.3

Q ss_pred             CCCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCe
Q psy15667          1 TPPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGG   76 (286)
Q Consensus         1 ~~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G   76 (286)
                      +||.+..-...-.-..++.++|.|.+.|. |. ..|+|..++....    .........++.  ..+.|+|..-... .+
T Consensus         4 s~PsV~~l~p~~~~~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~----~~~~~~~~~~g~ys~~S~L~v~~~~w~-~~   78 (102)
T d1mjuh2           4 TAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSG----VHTFPAVLQSDLYTLSSSVTVTSSTWP-SQ   78 (102)
T ss_dssp             BCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEGGGTBCTT----EEECCCEEETTEEEEEEEEEECTTTTT-TS
T ss_pred             cCCEEEEECCCccccCCCcEEEEEEEeeeeCCCeEEEECcCCccCC----eEecccccCCCCEEEEEEEEEehhHcC-Cc
Confidence            46766533222223467899999999984 33 4799987764321    111011111221  2344777766653 56


Q ss_pred             EEEEEEEcCCE
Q psy15667         77 EYACVAENRAG   87 (286)
Q Consensus        77 ~Y~C~a~n~~g   87 (286)
                      .|+|.+....+
T Consensus        79 ~ytC~V~H~~~   89 (102)
T d1mjuh2          79 SITCNVAHPAS   89 (102)
T ss_dssp             CCEEEEEEGGG
T ss_pred             eEEEEEEECCC
Confidence            89999986543

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.21  E-value=0.0012  Score=43.39  Aligned_cols=63  Identities=17%  Similarity=0.363  Sum_probs=32.4

Q ss_pred             CeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCC-ceeeec-C-C--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        209 ARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFP-VNVSDL-D-S--FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       209 ~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~-~~~~~~-~-~--~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      +...|.|.+..-.| ...++|++||+.+..... ...... + .  ....|.   +..++...|+|.+.-..
T Consensus        20 ~~~tL~C~v~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~S~L~---v~~~~~~~ytC~V~H~s   88 (101)
T d1fnga1          20 EPNILICFIDKFSPPVVNVTWLRNGRPVTEGVSETVFLPRDDHLFRKFHYLT---FLPSTDDFYDCEVDHWG   88 (101)
T ss_dssp             SCEEEEEEEEEEBSSCCEEEEEETTEEECSSEEECCCEECSSSCEEEEEEEE---ECCCTTCCEEEEEECTT
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCeecCCCcEeCeEEECCCCcEEEEEEeE---EcCCCCCEEEEEEEECC
Confidence            33444444443323 357889888887754211 011111 1 1  123343   44566778999998654

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.20  E-value=0.00047  Score=47.03  Aligned_cols=71  Identities=20%  Similarity=0.346  Sum_probs=44.4

Q ss_pred             cccCCCcEEEEEEeecC-C---CCeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         13 TLQPGPAVSLKCIASGN-P---TPDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        13 ~~~~G~~~~l~C~~~g~-p---~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ....++.++|.|.+.|. |   ...++|.+||..+........ . ...++.  ..+.|+|..-.......|+|.+...
T Consensus        28 ~~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~-~-~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~  104 (119)
T d1igtb3          28 VLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTH-R-EDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNK  104 (119)
T ss_dssp             HHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCC-E-EECSSSEEEEEEEECCHHHHHTTCEEEEEEECT
T ss_pred             hcccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECcc-E-ECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEEC
Confidence            55678999999999984 4   347889999988753221111 1 111222  2334666555544556899999864

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.18  E-value=0.00011  Score=49.31  Aligned_cols=70  Identities=26%  Similarity=0.491  Sum_probs=44.9

Q ss_pred             ccccccCCCcEEEEEEeecC--CCCeeEEeeC--CEE------cC-CC----------CeeEeceEEecccceeEEEEEc
Q psy15667         10 IEQTLQPGPAVSLKCIASGN--PTPDIGWTLD--GFE------LP-TN----------NRFVIGQFVSGHGDVISHVNIS   68 (286)
Q Consensus        10 ~~~~~~~G~~~~l~C~~~g~--p~p~v~W~~~--~~~------l~-~~----------~~~~~~~~~~~~~~~~~~l~I~   68 (286)
                      .-.++++|+++.|+|.+.|.  ..-.+.|.+.  |+.      |. .+          .|+.++..   .......|.|.
T Consensus         8 G~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD---~s~~t~~L~~~   84 (117)
T d1b2wh1           8 GGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRD---KSKNTLYLQMN   84 (117)
T ss_dssp             CCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECC---TTTTEEEEEEC
T ss_pred             CCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEec---cccceEEeeec
Confidence            34578999999999999974  3345668763  221      21 11          24433221   11223459999


Q ss_pred             ccccCCCeEEEEEE
Q psy15667         69 HVTVEDGGEYACVA   82 (286)
Q Consensus        69 ~~~~~D~G~Y~C~a   82 (286)
                      +++.+|++.|.|..
T Consensus        85 sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          85 SLRPEDTAVYYCAR   98 (117)
T ss_dssp             SCCGGGCEEEECCE
T ss_pred             cccCCcceEEEEcc
Confidence            99999999999953

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.15  E-value=0.0013  Score=43.16  Aligned_cols=67  Identities=21%  Similarity=0.338  Sum_probs=33.3

Q ss_pred             CCeEEEEEeeecCC-CCCeEEEEeCCeeCCCCCC-cee-eecCCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        208 GARTRVICGVTHGD-PPLTIRWLKDGKPLSPRFP-VNV-SDLDSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       208 g~~~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~-~~~-~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      |....|.|.+.+-. ....++|++||..+..... -.. ...++.-.......+..+|...|+|.+....
T Consensus        19 ~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgtf~~~s~l~v~~~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          19 GQPNTLICLVDNIFPPVVNITWLSNGQSVTEGVSETSFLSKSDHSFFKISYLTFLPSADEIYDCKVEHWG   88 (99)
T ss_dssp             TSCEEEEEEEEEECSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEECCCTTCCEEEEEECTT
T ss_pred             CCcEEEEEEEEEEECCCCEEEEEECCEeccCCcEecceEECCCCCEEEEEEEEEcCCCCCEEEEEEEeCC
Confidence            33444455444322 2366889998887753210 000 1111110112223345567778999998653

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.12  E-value=0.0028  Score=42.34  Aligned_cols=80  Identities=24%  Similarity=0.517  Sum_probs=47.2

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-CCee-CCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKP-LSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~-~~~--~~  239 (286)
                      +.+|++++|.|.++|...  ..+.|.+..|-              ..+..            +.+.. ++.. ..+  ..
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PG--------------kglew------------i~~i~~~~~~~y~~s~kg   65 (117)
T d1c5db1          12 VQPSQTLSLTCTVSGFPLTTNGVSWVRQPPG--------------KGLEW------------IAAISSGGSPYYNSALKS   65 (117)
T ss_dssp             ECTTSCEEEEEEECSSCTTTCCEEEEEECTT--------------SCCEE------------EEEECTTCCEEECTTTSS
T ss_pred             ECCCCCeEEEEEEcCCCccCCceEcccCCCC--------------cceee------------eecccccccccccccccc
Confidence            457999999999998655  45889885432              11111            11111 1110 011  23


Q ss_pred             CceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ++.++.+.. ....|.|.+++.+|++.|.|-..
T Consensus        66 RftiS~D~s~n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          66 RLSINRDTSKSQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             SEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             ceEEecccccceeeccccccccCcceEEEEecc
Confidence            455554332 23469999999999999999543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.11  E-value=0.00055  Score=45.34  Aligned_cols=76  Identities=13%  Similarity=0.189  Sum_probs=43.7

Q ss_pred             ccccccccCCCcEEEEEEeecC-CC---CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEE
Q psy15667          8 SFIEQTLQPGPAVSLKCIASGN-PT---PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus         8 ~~~~~~~~~G~~~~l~C~~~g~-p~---p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .|....+..++.++|.|.+.|. |.   -.+.|.+++...........  ....++.  ..+.|.|..-.......|+|+
T Consensus         7 pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~--~~~~~gt~s~~S~L~v~~~~w~~g~~~tC~   84 (103)
T d1fp5a1           7 RPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHSTRKE--EKQRNGTLTVTSTLPVGTRDWIEGETYQCR   84 (103)
T ss_dssp             CCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCCEEEE--EEETTTEEEEEEEEECCHHHHHTTCCEEEE
T ss_pred             CcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccEEccc--EECCCCCEEEEEEEEEcHHHhCCCCeEEEE
Confidence            3333456678899999999984 54   25678888776543211111  0111121  233455554444445689999


Q ss_pred             EEcC
Q psy15667         82 AENR   85 (286)
Q Consensus        82 a~n~   85 (286)
                      +...
T Consensus        85 V~H~   88 (103)
T d1fp5a1          85 VTHP   88 (103)
T ss_dssp             EECS
T ss_pred             EEEC
Confidence            9874

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00044  Score=43.83  Aligned_cols=53  Identities=30%  Similarity=0.651  Sum_probs=37.4

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccc-ccCCCeEEEEEEE
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHV-TVEDGGEYACVAE   83 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~-~~~D~G~Y~C~a~   83 (286)
                      ..|.+|+|+|-..+.  -.+.|.+|+..|+....-              .|.+.+. .++|+|.|.|...
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~--------------~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECS
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCc--------------EEEEccccccccCcceEEecC
Confidence            579999999965532  469999999998743210              1445553 4589999999543

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.08  E-value=0.0039  Score=41.63  Aligned_cols=83  Identities=27%  Similarity=0.324  Sum_probs=47.4

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~~  240 (286)
                      +.+|++++|.|.++|...  ..++|.+..|--.              ....-...           .++... .+  ..+
T Consensus        12 vkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkg--------------lEwlg~i~-----------~~~~~~y~~~~kgR   66 (116)
T d7fabh1          12 VRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRG--------------LEWIGYVF-----------YTGTTLLDPSLRGR   66 (116)
T ss_dssp             ECTTSCEEEEEEEESSCSTTSEEEEEEECTTSC--------------CEEEEEEC-----------TTSCEEECGGGTTT
T ss_pred             ECCCCCEEEEEEEeeecCCCCcceeceECCCCc--------------ceeeeeec-----------ccccceeccceeec
Confidence            457999999999998654  4588988543211              11100000           011100 00  123


Q ss_pred             ceeeecC-CCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        241 VNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       241 ~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +.++.+. .....|.|.+++.+|++.|.|.....
T Consensus        67 ~tis~D~s~~~~~L~i~~L~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          67 VTMLVNTSKNQFSLRLSSVTAADTAVYYCARNLI  100 (116)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEECS
T ss_pred             ceeecccchhhhhccccccccccceEEEeeeecC
Confidence            4444332 22456999999999999999965433

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.07  E-value=0.002  Score=42.27  Aligned_cols=82  Identities=18%  Similarity=0.350  Sum_probs=42.2

Q ss_pred             cCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-C-Ce-eCCC--CCC
Q psy15667        168 DGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-D-GK-PLSP--RFP  240 (286)
Q Consensus       168 ~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~-g~-~~~~--~~~  240 (286)
                      +|+++.|.|.++|...  --++|.+..|--              .++..            .|.. + +. ...+  ..+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGk--------------glEwl------------~~i~~~~~~~~y~~~~~~R   54 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGR--------------GLEWI------------GRIDPNGGGTKYNEKFKSK   54 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC------------------CEEE------------EEEC----CEEECTTTTTT
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCC--------------ceEee------------eeccccccccccccceeec
Confidence            4889999999998654  358898854321              11110            1111 1 11 1111  123


Q ss_pred             ceeeecC-CCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        241 VNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       241 ~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      +.++.+. .....|.|.+++.+|++.|.|......+
T Consensus        55 ~tiS~D~s~~t~~L~~~sL~~eDTAvYYCAr~~~~~   90 (103)
T d1oari_          55 ATLTVDKPSSTAYMQLSSLTSEDSAVYYCARMWYYG   90 (103)
T ss_dssp             EEEEC----CEEEEEECCC---CCSEEEEEEEECSS
T ss_pred             eEEeccccccEEEeeeeeccccccEEEEeEEECCCC
Confidence            4343322 2234699999999999999997655443

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.05  E-value=0.0051  Score=40.42  Aligned_cols=51  Identities=22%  Similarity=0.371  Sum_probs=28.3

Q ss_pred             CeEEEEeCCeeCCCCCCceeeec-CC---CeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        224 LTIRWLKDGKPLSPRFPVNVSDL-DS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~~~~~~-~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      ..+.|++||..+........... +.   ....|.   +..+|...|+|.+.-..-..
T Consensus        35 i~V~W~~ng~~~~~~~~~~~~~~~dgty~~~S~L~---v~~~~~~~ytC~V~H~~l~~   89 (103)
T d1hdma1          35 LTVNWHDHSVPVEGFGPTFVSAVDGLSFQAFSYLN---FTPEPSDIFSCIVTHEPDRY   89 (103)
T ss_dssp             EEEEEEETTEECSSCCCEEEEEETTTEEEEEEEEE---ECCCTTCCEEEEEEETTTTE
T ss_pred             CEEEEEECCeecCCcEeceEEeCCCCcEEEEEEEE---EecCCCCEEEEEEEeCCCCC
Confidence            56788888887643322221111 11   122333   45667778999998764433

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.04  E-value=0.0019  Score=43.73  Aligned_cols=23  Identities=13%  Similarity=0.508  Sum_probs=19.2

Q ss_pred             eeeEEEcccCCCCCeEEEEEEEe
Q psy15667        250 SSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       250 ~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ...|.|.+++++|++.|.|....
T Consensus        79 ~~~L~i~~l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          79 QVVLTLTNLDPVDTATYYCARTS  101 (120)
T ss_dssp             EEEEEEESCCGGGCEEEEEEEEC
T ss_pred             eeeeeEEeeeeccceEEeeEecC
Confidence            35699999999999999996443

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0019  Score=41.81  Aligned_cols=74  Identities=20%  Similarity=0.196  Sum_probs=43.3

Q ss_pred             CCCCCeEEEEEeeecCCCCCeEE-EEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        205 LPEGARTRVICGVTHGDPPLTIR-WLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~~~~~-W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      +.+|+.+.+.|.+.  .|...+. |.+++..+.+... .+.-..  ..-.+|.++...|.|.|.|.|... |....+-.|
T Consensus        17 v~eg~~~vIPC~vT--~P~~~VtL~~~~~~~~~p~g~-~v~~Dp--k~Gf~I~~~~~~~~g~y~C~a~~~-g~~~~S~yl   90 (95)
T d1fltx_          17 MTEGRELVIPCRVT--SPNITVTLKKFPLDTLIPDGK-RIIWDS--RKGFIISNATYKEIGLLTCEATVN-GHLYKTNYL   90 (95)
T ss_dssp             ECTTSCEEECCCBS--CTTSCCEEEETTTEEECCCSS-SEEEET--TTEEEESSCCGGGCEEEEEEEEET-TEEEEEEEE
T ss_pred             EeCCCCEEEEccCC--CCCceeEEEeccCCccCCCCC-EEEECC--CCCEEEeCCCcccCeEEEEEEEEC-CEEEEEEEE
Confidence            45677777777664  3444443 4446655543322 222111  123579999999999999999766 444344444


Q ss_pred             E
Q psy15667        284 Q  284 (286)
Q Consensus       284 ~  284 (286)
                      .
T Consensus        91 ~   91 (95)
T d1fltx_          91 T   91 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.00  E-value=0.0004  Score=46.22  Aligned_cols=72  Identities=21%  Similarity=0.359  Sum_probs=44.3

Q ss_pred             ccccCCCcEEEEEEeecC-CC---CeeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         12 QTLQPGPAVSLKCIASGN-PT---PDIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        12 ~~~~~G~~~~l~C~~~g~-p~---p~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ..+..++.++|.|.+.|. |.   -.+.|.+|+..+...... . .....++.  ..+.|.|..-.......|+|.+...
T Consensus        13 e~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~~~~~~~~-~-~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~   90 (105)
T d1l6xa1          13 DTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVHNAKTK-P-REEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNK   90 (105)
T ss_dssp             HHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEECCCEEC-C-CEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECT
T ss_pred             HhhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeECCCcEEC-C-cEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeC
Confidence            457788999999999984 43   467799999887543211 1 01111222  1334666555544455899999864

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.99  E-value=0.0012  Score=44.44  Aligned_cols=82  Identities=18%  Similarity=0.404  Sum_probs=46.8

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~~  240 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|-              ....+.-...           .++..- .+  ..+
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pG--------------kglewl~~i~-----------~~g~~~y~~~~kgR   65 (119)
T d1kxvc_          11 VPAGGSLRLSCAASGNTLCTYDMSWYRRAPG--------------KGRDFVSGID-----------NDGTTTYVDSVAGR   65 (119)
T ss_dssp             ECTTCCEEEEEEEESCTTCCEEEEEEEECTT--------------SCEEEEEEEC-----------TTCCEEECGGGBTT
T ss_pred             ECCCCCeEEEEEEcCCCccCCceeeeeeCCC--------------Ccceeeeecc-----------cccchhhhhhhhcc
Confidence            457999999999988654  34788874322              1111111110           111110 01  123


Q ss_pred             ceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.++.+.. ....|.|.+++.+|++.|.|.+..
T Consensus        66 ~tiS~D~s~~~~~L~i~~L~~eDtA~YYCAr~~   98 (119)
T d1kxvc_          66 FTISQGNAKNTAYLQMDSLKPDDTAMYYCKPSL   98 (119)
T ss_dssp             EEEEECSSTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEecccCCcceecccccCCcCCcceEeeeecc
Confidence            44443322 234699999999999999996544

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.98  E-value=0.0013  Score=40.69  Aligned_cols=61  Identities=21%  Similarity=0.296  Sum_probs=36.3

Q ss_pred             CCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccCCCCCeEEEEEEEecccceeeEEEE
Q psy15667        207 EGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVSAAHSGEYTCVASNTAAQARYSSKL  283 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~L  283 (286)
                      .|..+.|.|..+   ....|.|.+|+..-...          .+.+|+|.-=..-|+|+|+|- . . |+.-....|
T Consensus        20 ~~~~V~L~C~t~---eE~~I~W~kd~~se~~~----------~GntltV~VkE~~~aGnYTCh-k-~-g~~Lnht~l   80 (87)
T d3d85d1          20 PGEMVVLTCDTP---EEDGITWTLDQSSEVLG----------SGKTLTIQVKEFGDAGQYTCH-K-G-GEVLSHSLL   80 (87)
T ss_dssp             CCEEEEEECSSS---CCSSCEEEETTCCCCCE----------ESSEEEEEECSGGGCEEEEEE-E-T-TEEEEEEEE
T ss_pred             CccEEEEecCCC---cccccEEeeCCcccccc----------CCCEEEEEEEeccCCcceeEe-C-C-CcEeeeEEE
Confidence            466788888532   23479999997641111          134555543345699999995 3 2 554444433

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.97  E-value=0.00082  Score=43.64  Aligned_cols=52  Identities=25%  Similarity=0.454  Sum_probs=30.0

Q ss_pred             CCeEEEEeCCeeCCCCC--Cceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        223 PLTIRWLKDGKPLSPRF--PVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       223 ~~~~~W~~~g~~~~~~~--~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ...++|++||+.+....  ....... +..-.......+..+|...|+|.+....
T Consensus        31 ~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          31 NITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             CCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            45789999998875321  1111111 1111222334556678889999998763

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=96.95  E-value=0.0015  Score=41.99  Aligned_cols=61  Identities=23%  Similarity=0.338  Sum_probs=32.2

Q ss_pred             eEEEEEeeecCC-CCCeEEEEeCCeeCCCCCCceeee-cC-C--CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        210 RTRVICGVTHGD-PPLTIRWLKDGKPLSPRFPVNVSD-LD-S--FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       210 ~~~l~c~~~~~~-p~~~~~W~~~g~~~~~~~~~~~~~-~~-~--~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      .+.|.|.+.+-. ....++|+++|..+.... ..... .+ .  ....|.   +..+|...|+|.+.-..
T Consensus        17 ~~~L~C~~~gF~P~~i~v~W~~ng~~~~~~~-~~~~~~~dgty~~~S~l~---v~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          17 SSVLTCAAFSFYPPELKFRFLRNGLASGSGN-CSTGPNGDGSFHAWSLLE---VKRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEETTEECCCCE-EEEEECSSSCEEEEEEEE---EETTCGGGEEEEEECTT
T ss_pred             CEEEEEEEEeEECCCCEEEEEECCEeCCccC-ccceecCCCCEeEEEEEE---ECCCCCCEEEEEEEeCC
Confidence            344444443322 235788999888775432 11111 11 1  122343   44567789999998653

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.93  E-value=0.0011  Score=42.00  Aligned_cols=51  Identities=24%  Similarity=0.577  Sum_probs=32.0

Q ss_pred             CCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCceeeecCCCeeeEEEcccC-CCCCeEEEEEEE
Q psy15667        208 GARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNVSDLDSFSSLLSINSVS-AAHSGEYTCVAS  271 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~~~~~~~~~~L~i~~v~-~~d~G~Y~C~a~  271 (286)
                      |..+.|+|...   ....|.|.+++..+....          ...|.+.+.+ .+|+|-|.|...
T Consensus        14 GTtV~LTCP~~---~~~~I~Wkkn~~~i~g~~----------~~~L~L~~FSE~e~SGyY~C~~~   65 (100)
T d1jbja2          14 GTSVELTCPLD---SDENLKWEKNGQELPQKH----------DKHLVLQDFSEVEDSGYYVCYTP   65 (100)
T ss_dssp             TTEEEEECSSC---CCTTCEEEETTEEECSCC----------CSEEEEESCCTTTSCEEEEEECS
T ss_pred             CCEEEEECCCC---CCCceEEeeccccCCCCC----------CcEEEEccccccccCcceEEecC
Confidence            44444455322   124589999998775432          2246667754 589999999644

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=96.92  E-value=0.00067  Score=44.46  Aligned_cols=28  Identities=25%  Similarity=0.398  Sum_probs=21.5

Q ss_pred             CCCcEEEEEEeecC-CC-CeeEEeeCCEEc
Q psy15667         16 PGPAVSLKCIASGN-PT-PDIGWTLDGFEL   43 (286)
Q Consensus        16 ~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l   43 (286)
                      ....++|.|.+.|. |. -.|+|.+||..+
T Consensus        13 ~~~~vtL~C~~~gFyP~~I~v~W~~ng~~~   42 (98)
T d1u58a1          13 REGGMRLRCFARDYYPADLEIRWWKDDGGG   42 (98)
T ss_dssp             SSSCEEEEEEEEEEBSSCEEEEEEEECSSS
T ss_pred             CCCcEEEEEEEEEEcCCCCEEEEEECCccc
Confidence            34578999999995 43 378899998765

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=96.91  E-value=0.0043  Score=40.30  Aligned_cols=52  Identities=13%  Similarity=0.346  Sum_probs=27.7

Q ss_pred             CeEEEEeCCeeCCCCCCc-e-eeecCCCeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        224 LTIRWLKDGKPLSPRFPV-N-VSDLDSFSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~-~-~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      ..+.|+++|..+...... . ....++.-.......+..++...|+|.+.-..-
T Consensus        33 i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~~~~ytC~V~H~sl   86 (97)
T d1uvqb1          33 IKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEMTPQRGDVYTCHVEHPSL   86 (97)
T ss_dssp             CEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEECCSCTTCCEEEEEECTTC
T ss_pred             eEEEEEECCEEcCCCcEeceeecCCCceEEEEEEeccCCCCCCEEEEEEEeCCC
Confidence            567888888765432110 0 001111111222334567788899999986643

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.89  E-value=0.00065  Score=45.40  Aligned_cols=72  Identities=15%  Similarity=0.340  Sum_probs=43.5

Q ss_pred             CCCCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCcee---ee-c--CC---CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        203 DGLPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNV---SD-L--DS---FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       203 ~~~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~---~~-~--~~---~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..+..++.+.|.|.+....|. ..|.|+++|..+........   .. .  ++   ....|.|..-.-.....|+|.+..
T Consensus        15 ~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w~~g~~ytC~V~H   94 (108)
T d1ow0a2          15 EELALNELVTLTCLARGFSPKDVLVRWLQGSQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGH   94 (108)
T ss_dssp             TTTTSSSEEEEEEEEEEESSSCCEEEEEETTEECCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHHHHTCCEEEEEEC
T ss_pred             HHhccCCceEEEEEEEEeECCCEEEEEEECCeEcCCCceEcccceecccCCCCcEEEEEEEEEcHHHhCCCCEEEEEEEe
Confidence            345567888899988765554 58999999998754321110   00 0  00   123455544333447899999987


Q ss_pred             cc
Q psy15667        273 TA  274 (286)
Q Consensus       273 ~~  274 (286)
                      ..
T Consensus        95 ~s   96 (108)
T d1ow0a2          95 EA   96 (108)
T ss_dssp             TT
T ss_pred             CC
Confidence            54

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.88  E-value=0.0032  Score=43.21  Aligned_cols=83  Identities=18%  Similarity=0.393  Sum_probs=45.5

Q ss_pred             EecCCCEEEEeeEeeecC----CeEEEEEcCCcccccccccCCCCCCCeEEEEEee-ecCCCCCeEEEEeCCeeCCCCCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI----EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGV-THGDPPLTIRWLKDGKPLSPRFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~----~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~-~~~~p~~~~~W~~~g~~~~~~~~  240 (286)
                      +.+|++++|.|.++|...    .-+.|.+..|.-              ...+.-.. ..+.     ..+.+  .+  ..+
T Consensus        12 vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~--------------~le~l~~i~~~~~-----~~y~~--~~--k~R   68 (132)
T d1tjgh1          12 VKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGK--------------ALEWLAIIYSDDD-----KRYSP--SL--NTR   68 (132)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTS--------------CCEEEEEEETTSC-----EEECG--GG--TTT
T ss_pred             ECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCc--------------ccEEEEEecCCCc-----cEeee--ee--eec
Confidence            457999999999988543    247898754321              11111000 0000     01110  01  123


Q ss_pred             ceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        241 VNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       241 ~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      +.++.+.. ..-.|.|.+++.+|++.|.|...
T Consensus        69 ftis~d~s~~~~~L~i~~l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          69 LTITKDTSKNQVVLVMTRVSPVDTATYFCAHR  100 (132)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ceecccccccEEEcccccCCcccceEEEEEEe
Confidence            44443322 23459999999999999999654

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.86  E-value=0.0047  Score=41.20  Aligned_cols=87  Identities=17%  Similarity=0.299  Sum_probs=48.3

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+|+++.|.|.++|...  ..++|.+..|.              ..+...-.......   ...+.+    .-..++.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PG--------------kglewvg~i~~~~~---~~~ya~----s~kgR~t   69 (117)
T d1jpth1          11 LVQPGGSLRLSCAASGFNIKEYYMHWVRQAPG--------------KGLEWVGLIDPEQG---NTIYDP----KFQDRAT   69 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTT--------------SCEEEEEEECTTTC---CEEECT----TTTTTEE
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEcceeCCC--------------cceEeeeecccccc---cccccc----cceeeEE
Confidence            3457999999999998654  46889885432              11111111000000   001111    0122444


Q ss_pred             eeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        243 VSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       243 ~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.+. .....|.|.+++.+|++.|.|....
T Consensus        70 iSrD~s~nt~yL~m~~L~~eDTAvYYCAr~~  100 (117)
T d1jpth1          70 ISADNSKNTAYLQMNSLRAEDTAVYYCARDT  100 (117)
T ss_dssp             EEEEGGGTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEeccccceEEecccccCCCCceEEEEeecC
Confidence            54432 2234689999999999999996543

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.85  E-value=0.01  Score=39.61  Aligned_cols=89  Identities=16%  Similarity=0.234  Sum_probs=49.1

Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+.+|+++.|.|.++|....  .+.|.+..|-              ..+...-......   .-..+.+    .-..++.
T Consensus        11 ~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PG--------------kglEwv~~i~~~~---~~~~Y~~----s~kgRft   69 (118)
T d2fbjh1          11 LVQPGGSLKLSCAASGFDFSKYWMSWVRQAPG--------------KGLEWIGEIHPDS---GTINYTP----SLKDKFI   69 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEECTTS---SCEEECT----TTTTTEE
T ss_pred             eECCCCCEEEEEEECCccccCCceeeeeecCC--------------cceeeeeecCccc---ccccccc----cceeeEE
Confidence            34579999999999986543  5889875432              1111111110000   0001111    0112344


Q ss_pred             eeecCC-CeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        243 VSDLDS-FSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       243 ~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ++.+.. ....|.|.+++.+|++.|.|......
T Consensus        70 iSrD~s~nt~~L~~~sL~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          70 ISRDNAKNSLYLQMSKVRSEDTALYYCARLHYY  102 (118)
T ss_dssp             EEECSSSCEEEEEECSCCGGGCEEEEEEEEETT
T ss_pred             EeecCccceeeccccccCCCcceEEEeeEecCC
Confidence            444322 23468999999999999999765543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.84  E-value=0.00067  Score=42.42  Aligned_cols=62  Identities=21%  Similarity=0.415  Sum_probs=39.8

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEccccc-CCCeEEEEEEEc
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTV-EDGGEYACVAEN   84 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~-~D~G~Y~C~a~n   84 (286)
                      ..|.+|+|+|-.  .+...+.|.+++..+.......      ..+.....|.+.+-.. +++|.|.|.+..
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~------~~~~~~~~l~L~dfSe~e~sGyY~C~~~~   70 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDK------NIGSDEDHLSLKEFSELEQSGYYVCYPRG   70 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCT------TEEEETTEEEETTCCHHHHCEEEEEEETT
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCccc------ccccccceEEecccCccccCceEEEEcCC
Confidence            579999999942  2345799999998876421100      0000112366777644 799999998853

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.84  E-value=0.0043  Score=40.72  Aligned_cols=69  Identities=16%  Similarity=0.418  Sum_probs=41.4

Q ss_pred             ccCCCcEEEEEEeecC-CCC--eeEEeeCCEEcCCCCeeEeceEEecccc--eeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         14 LQPGPAVSLKCIASGN-PTP--DIGWTLDGFELPTNNRFVIGQFVSGHGD--VISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        14 ~~~G~~~~l~C~~~g~-p~p--~v~W~~~~~~l~~~~~~~~~~~~~~~~~--~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ...++.++|.|.+.|. |..  .+.|.+|+..+... .+.  ......+.  ..+.|+|..-.......|+|++.-.
T Consensus        16 ~~~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~~-~~~--~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~   89 (102)
T d2fbjh2          16 ALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTV-NFP--PALASGGRYTMSNQLTLPAVECPEGESVKCSVQHD   89 (102)
T ss_dssp             SSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEE-ECC--CEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEET
T ss_pred             ccCCCcEEEEEEEEcccCCCcEEEEEccCCCcCcee-Eee--eEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEEC
Confidence            3457899999999994 543  57788887654211 000  00111121  2334777777666666899999753

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.84  E-value=0.0037  Score=41.11  Aligned_cols=78  Identities=18%  Similarity=0.388  Sum_probs=42.8

Q ss_pred             ecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-CCee-CCC--CCC
Q psy15667        167 IDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-DGKP-LSP--RFP  240 (286)
Q Consensus       167 ~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~g~~-~~~--~~~  240 (286)
                      .+|+++.|.|.++|.-.  ..++|.+..|--              .+...-            +.. ++.. ..+  ..+
T Consensus         6 kPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGk--------------glewi~------------~i~~~g~t~y~~~~kgR   59 (107)
T d1sjva_           6 QAGESLKLSCAASGNTFSGGFMGWYRQAPGK--------------QRELVA------------TINSRGITNYADFVKGR   59 (107)
T ss_dssp             CTTCCEEEEECCCC-----CCEEEEEECTTS--------------CCEEEE------------EECTTCCEEECTTTTTC
T ss_pred             cCCCCcEEEEEECCCCccCCcEEEEEeCCcc--------------ceeeee------------eeeeccccccccccccc
Confidence            36899999999987533  457888754321              111111            111 1110 001  123


Q ss_pred             ceeeecCC-CeeeEEEcccCCCCCeEEEEEE
Q psy15667        241 VNVSDLDS-FSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       241 ~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      +-++.+.. ....|.|.+++.+|++.|.|..
T Consensus        60 ~tiSrd~s~n~~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          60 FTISRDNAKKTVYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             EEEEECTTTCCEEEEECSCCGGGCSEEEEEE
T ss_pred             eEEecCCceeEEEEeecCCCcccceeeeEec
Confidence            44444322 2346899999999999999954

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.78  E-value=0.0031  Score=42.16  Aligned_cols=83  Identities=18%  Similarity=0.412  Sum_probs=48.6

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC---CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL---SP  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~---~~  237 (286)
                      .+.+|+++.|.|.++|...  -.++|.+..|.              ..+.+.            .|..  ++...   ..
T Consensus        11 ~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PG--------------kglEwl------------g~i~~~~~~~~y~~~~   64 (117)
T d1iqdb1          11 VKKPGASVKVSCKVSGYTLTELPVHWVRQAPG--------------KGLEWV------------GSFDPESGESIYAREF   64 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEE------------EEEETTTTEEEECGGG
T ss_pred             eECCCCCEEEEEEEcCCCCCCCCEEEEEECCC--------------Cceeee------------eecCCccccceeccee
Confidence            3457999999999998643  45889885432              111111            1111  11110   01


Q ss_pred             CCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        238 RFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       238 ~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ..++.++.+.. ....|.|.+++.+|++.|.|.....
T Consensus        65 ~gR~tiS~D~s~~t~~L~i~~L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          65 QGSVTMTADTSTNIAYMELSSLRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECSS
T ss_pred             eeeeeeecccccceEEEeecccCcCcceEEEEeEcCC
Confidence            22444444322 2346999999999999999976543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=96.78  E-value=0.0035  Score=41.84  Aligned_cols=85  Identities=22%  Similarity=0.407  Sum_probs=46.6

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|+++.|.|.++|...  -.+.|.+.+|--              .+...-... ..-   ...+.+.    -..++.+
T Consensus        12 vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGk--------------glewlg~i~-~~~---~~~y~~s----~kgR~ti   69 (116)
T d1a2yb_          12 VAPSQSLSITCTVSGFSLTGYGVNWVRQPPGK--------------GLEWLGMIW-GDG---NTDYNSA----LKSRLSI   69 (116)
T ss_dssp             ECTTSCEEEEEEEESSCTTSSEEEEEEECTTS--------------CCEEEEEEC-TTS---CEEECTT----TGGGEEE
T ss_pred             ECCCCCeEEEEEEcccccCCCCCccceECCCc--------------ceeeeeecC-ccc---cceeccc----ccccceE
Confidence            457999999999998654  358898854321              111110000 000   0011110    0123334


Q ss_pred             eecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        244 SDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       244 ~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.+.. ....|.|++++.+|++.|.|-...
T Consensus        70 s~D~s~n~~~L~~~~l~~eDTAvYYCAr~~   99 (116)
T d1a2yb_          70 SKDNSKSQVFLKMNSLHTDDTARYYCARER   99 (116)
T ss_dssp             EEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             eccCCCceEEcceeeeeeccceEEEEEEeC
Confidence            43222 234689999999999999996543

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.77  E-value=0.0074  Score=40.55  Aligned_cols=79  Identities=15%  Similarity=0.272  Sum_probs=45.3

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC-CC--C
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL-SP--R  238 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~-~~--~  238 (286)
                      +.+|++++|.|.++|...  ..+.|.+..|.                          ..+.-+.|..  ++..- .+  .
T Consensus        12 ~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PG--------------------------kgle~l~~i~~~~~~~~y~~~~~   65 (119)
T d1qnzh_          12 VKPGASVKMSCKASGYTFTTYPIEWMKQNHG--------------------------KSLEWIGNFHPYSDDTNYNEKFK   65 (119)
T ss_dssp             ECTTEEEEEEEEEETCCSSSSCEEEEEEETT--------------------------SCCEEEEEEETTTTEECCCTTTT
T ss_pred             ECCCCCEEEEEEEeccCCCCCCcceeeecCC--------------------------CcceEeeccCCcccccchhhhhc
Confidence            347999999999987543  35889874321                          1111111211  11111 11  1


Q ss_pred             CCceeeecCC-CeeeEEEcccCCCCCeEEEEEE
Q psy15667        239 FPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       239 ~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      .++.++.+.. ....|.|.+++.+|++.|.|..
T Consensus        66 gR~tis~d~s~~~~~L~i~~L~~eDsAvYYCA~   98 (119)
T d1qnzh_          66 GKAKLTVEKSSSTVYLEFSRLTSDDSAVYYCAI   98 (119)
T ss_dssp             TTEEEEEETTTTEEEEEEEEECGGGCEEEEEEE
T ss_pred             ccceeecccccceeeeeecccCccceeEEEEEE
Confidence            2444443322 2346999999999999999954

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.75  E-value=0.0064  Score=40.76  Aligned_cols=83  Identities=18%  Similarity=0.350  Sum_probs=48.3

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~  239 (286)
                      .+.+|+++.|.|.++|...  -.+.|.+..|.              ..+...-...          ..++..- .+  ..
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PG--------------kglewv~~i~----------~~~~~~~ya~s~kg   66 (119)
T d1rz7h1          11 VKKPGATVKISCKASGYTFSDFYMYWVRQAPG--------------KGLEWMGLID----------PEDADTMYAEKFRG   66 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEEE----------TTTTEEEECTTTTT
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceEccccCCc--------------cceeeeeecC----------Ccccccccccceee
Confidence            3457999999999998654  45889875422              2111111110          0112111 11  22


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|...
T Consensus        67 RftiSrD~s~nt~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          67 RVTITADTSTDTGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEC
T ss_pred             eEEEecccCceEEEeeeeccCcccceEEEEeec
Confidence            45555433 233468999999999999999654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.73  E-value=0.0051  Score=39.67  Aligned_cols=51  Identities=14%  Similarity=0.385  Sum_probs=28.9

Q ss_pred             CeEEEEeCCeeCCCCCCceeeec-CCCeeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        224 LTIRWLKDGKPLSPRFPVNVSDL-DSFSSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       224 ~~~~W~~~g~~~~~~~~~~~~~~-~~~~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ..++|++||..+........... +..-.......+..+|...|+|.+.-..
T Consensus        32 i~v~W~~ng~~~~~~~~~~~~~~~~~t~~~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          32 IDVHWTRAGEVQEPELRGDVLHNGNGTYQSWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             EEEEEEETTEECCCSEEEEEEETTTTEEEEEEEEEECTTCCSCEEEEEEETT
T ss_pred             CEEEEEECCEECCCcEEeeeecCCCCeEEEEEEeEeCCCCCCEEEEEEEECC
Confidence            56788888887654322221111 1111223344456777889999998654

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.71  E-value=0.0086  Score=39.71  Aligned_cols=84  Identities=19%  Similarity=0.413  Sum_probs=46.0

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|-              ..+...-.....   ....++-+    .-..++-+
T Consensus        12 vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PG--------------kglEwv~~i~~~---~~~~~y~~----s~kgRfti   70 (114)
T d1indh1          12 VKPGGSLKLSCAASGFTLSGETMSWVRQTPE--------------KRLEWVATTLSG---GGFTFYSA----SVKGRFTI   70 (114)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------CCEEEEEEECST---TCCEEECT----TTTTTEEE
T ss_pred             ECCCCCEEEEEEECccCccCCceeccccCCC--------------CccEEeeecccc---cchhhhhh----hheeeEEE
Confidence            457999999999998644  45889875432              111111100000   00001100    01124444


Q ss_pred             eecCC-CeeeEEEcccCCCCCeEEEEEE
Q psy15667        244 SDLDS-FSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       244 ~~~~~-~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      +.+.. ..-.|.|++++.+|++.|.|..
T Consensus        71 SrD~s~nt~~L~~~~L~~eDtAvYYCA~   98 (114)
T d1indh1          71 SRDNAQNNLYLQLNSLRSEDTALYFCAS   98 (114)
T ss_dssp             EEETTTTEEEEEECSCCGGGCEEEEEEC
T ss_pred             eccCccceeeeeeeeeccCcccEEEECC
Confidence            44322 2335999999999999999954

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.71  E-value=0.011  Score=40.08  Aligned_cols=80  Identities=23%  Similarity=0.362  Sum_probs=45.7

Q ss_pred             EecCCCEEEEeeEeeecC----CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC-CeeC-CC--
Q psy15667        166 AIDGEGLSIKCPVAGYPI----EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GKPL-SP--  237 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~----~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~~~-~~--  237 (286)
                      +.+|++++|.|.++|...    ..+.|.+..|.              ..            +.-+.+... +... .+  
T Consensus        12 vkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg--------------~~------------le~l~~i~~~~~~~~~~s~   65 (126)
T d1etzb1          12 LQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSG--------------EG------------LEWLADIWWNDKKYYNPSL   65 (126)
T ss_dssp             ECTTCCEEEEEEEESSCTTSTTEEEEEEEEETT--------------TC------------CEEEEEEETTCCEEECTTT
T ss_pred             ECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCC--------------cc------------ceEeeecCCCCCceeceee
Confidence            447999999999987533    34678774322              11            111111111 1110 11  


Q ss_pred             CCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        238 RFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       238 ~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ..++.++.+.. ....|.|.+++.+|++.|.|...
T Consensus        66 ~~Rftis~d~s~~t~~L~i~~l~~eDtAvYyCAr~  100 (126)
T d1etzb1          66 KSRLTVSKDTSSNQVFLKITSVDTSDTATYHCARR  100 (126)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEeeEEecccCCcEEEcceecccccccceEEEEEe
Confidence            12444444332 23469999999999999999743

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.66  E-value=0.0063  Score=40.65  Aligned_cols=84  Identities=18%  Similarity=0.273  Sum_probs=47.2

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-C--CCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-S--PRF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~--~~~  239 (286)
                      .+.+|+++.|.|.++|...  -.++|.+..|.              ..+...-....          .++..- .  -..
T Consensus        10 ~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pG--------------kglewl~~i~~----------~~~~~~y~~~~kg   65 (117)
T d1um5h1          10 LVKPGGSVKMSCKASEYTLTSYLFQWVKQKSG--------------QGLEWIGYIYP----------YNGGTRYNEKFRG   65 (117)
T ss_dssp             EECTTCCEEEEEEESSCCCSCCEEEEEEECTT--------------SCEEEEEEEET----------TTTEEEECGGGTT
T ss_pred             eECCCCCEEEEEEEccccCCCCcCccceeCCC--------------ccceeeeecCC----------ccCccccccceee
Confidence            3457999999999998654  35889875422              11111111000          011100 0  012


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|....
T Consensus        66 RftiS~D~s~~t~~L~m~sL~~eDtAvYYCAr~~   99 (117)
T d1um5h1          66 KATLTSDKSSNTAYLELSSLTSEDSAVYYCARSS   99 (117)
T ss_dssp             CEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEeccCceeEeecccccCCCcceEEEEeecc
Confidence            34444332 2234699999999999999996443

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.65  E-value=0.0037  Score=41.62  Aligned_cols=82  Identities=16%  Similarity=0.305  Sum_probs=46.9

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~  239 (286)
                      .+.+|+++.|.|.++|...  .-+.|.+.+|.              ..+...-...          ..++... .+  ..
T Consensus        11 ~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PG--------------kgLEw~g~i~----------~~~~~~~ya~s~kg   66 (116)
T d1mjuh1          11 LVKPGASVKLSCKASGYTFTNYWINWVKQRPG--------------QGLEWIGNIY----------PGSSYTHYNEKFKN   66 (116)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEEE----------TTTTEEEECGGGTT
T ss_pred             EECCCCCEEEEEEEccCccccCceEeeeeCCC--------------cceeeeeecC----------ccccccccccccce
Confidence            4557999999999998654  45889875432              1111111000          0011111 11  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|..
T Consensus        67 R~tiS~D~s~~tvyL~~~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          67 KATLTVDTSSSTAYMQLSSLTSDDSAVYYCAN   98 (116)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eeeEecccccceeEecccccCCCCceEEEEcc
Confidence            44444332 22346889999999999999954

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=96.65  E-value=0.0039  Score=41.94  Aligned_cols=82  Identities=23%  Similarity=0.385  Sum_probs=46.4

Q ss_pred             EecCCCEEEEeeEeeecC----CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--C
Q psy15667        166 AIDGEGLSIKCPVAGYPI----EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--R  238 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~----~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~  238 (286)
                      +.+|++++|.|.++|...    ..+.|.+..|-              ..+++.-...           .+|..- .+  .
T Consensus        12 vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PG--------------kglEwl~~i~-----------~~g~t~y~~s~k   66 (120)
T d1ai1h1          12 IKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPG--------------KGLEWMGRIC-----------YEGSIYYSPSIK   66 (120)
T ss_dssp             ECSSSCEEEEEEEESSCTTSTTEEEEEEEECTT--------------SCEEEEEEEE-----------TTSCEEECHHHH
T ss_pred             ECCCCCEEEEEEEcccccccCccccCcccCCCc--------------ccceeeeecc-----------cccchhhchhhc
Confidence            457999999999998643    24789875432              1111111110           111100 00  1


Q ss_pred             CCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++-++.+.. ....|.|.+++.+|++.|.|....
T Consensus        67 gRfTiSrD~s~n~~~L~~~sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          67 SRSTISRDTSLNKFFIQLISVTNEDTAMYYCSREN  101 (120)
T ss_dssp             TTEEEEEETTTTEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             ccceeccccccceeecceeeeeccceeEEEEEecC
Confidence            2344444322 234689999999999999996543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.64  E-value=0.0092  Score=40.01  Aligned_cols=80  Identities=18%  Similarity=0.353  Sum_probs=46.3

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEE-eCCee--CCC--C
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL-KDGKP--LSP--R  238 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~-~~g~~--~~~--~  238 (286)
                      +.+|+++.|.|.++|...  ..++|.+..|--              .+..            +.+. .++..  ..+  .
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGk--------------glew------------v~~i~~~~~~~~Y~~s~k   65 (121)
T d2p49b1          12 VQAGGSLRLSCAASGYAYTYIYMGWFRQAPGK--------------EREG------------VAAMDSGGGGTLYADSVK   65 (121)
T ss_dssp             EETTCCEEEEEEEESCSSCCSEEEEEEECTTS--------------CCEE------------EEEEETTSCSCEECGGGT
T ss_pred             ECCCCCeEEEEEEcCCCcccCceeeccCCCCC--------------ceee------------eeecCCccccccccccee
Confidence            457999999999998654  458898854321              1111            1111 11110  011  1


Q ss_pred             CCceeeecC-CCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        239 FPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       239 ~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      .++.++.+. .....|.|.+++.+|++.|.|...
T Consensus        66 gRftiSrD~s~~t~yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          66 GRFTISRDKGKNTVYLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             TTEEEECTTSTTEEEEEECSCCGGGCEEEEEEES
T ss_pred             EeEEEeecCCceEEEEEeeeccccceeEEeeecc
Confidence            234444322 223468999999999999999653

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=96.63  E-value=0.0013  Score=44.13  Aligned_cols=84  Identities=15%  Similarity=0.369  Sum_probs=48.6

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|+++.|.|.++|...  -.+.|.+..|              |..+.+......+.    ..-+.+.    -..++.+
T Consensus        12 vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~P--------------GkglEwl~~i~~~g----~t~y~~s----~kgR~ti   69 (118)
T d1lo4h1          12 VKPGGSLTLSCEASGFTLRTYGMSWVRQTP--------------QMRLEWVASISYGG----LLYFSDS----VKGRFTI   69 (118)
T ss_dssp             ECTTCCEEEEEEEESSCTTTSEEEEEEECT--------------TCCEEEEEEECTTC----CEEECTT----TBTTBEE
T ss_pred             ECCCCCeEEEEEECCCcccCCCcccccCCC--------------Ccceeeeeeccccc----chhhccc----cceeEEE
Confidence            457999999999998755  3688988543              22222222211100    0001110    1124445


Q ss_pred             eecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        244 SDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       244 ~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      +.+.. ....|.|.+++.+|++.|.|...
T Consensus        70 SrD~s~nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          70 SRDIVRNILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             EEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eccccceeeeeccccccCCcceEEEeccc
Confidence            44332 23468999999999999999654

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.63  E-value=0.0066  Score=40.83  Aligned_cols=82  Identities=16%  Similarity=0.316  Sum_probs=47.8

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC-C--C
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL-S--P  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~-~--~  237 (286)
                      .+.+|+.++|.|.++|...  ..+.|.+..|-              ..+.+.            .+..  .+... .  -
T Consensus        11 ~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PG--------------k~lewl------------~~i~~~~~~~~y~~~~   64 (120)
T d1pg7x1          11 LVKPGASVKISCKASGYSFTGHLLNWVKQSHG--------------KNLEWI------------GLVHPHNGAITYNQKF   64 (120)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTT--------------SCEEEE------------EEEETTTTEEEECGGG
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeeecCC--------------CceEEe------------eecCccccchhhhHHh
Confidence            3457999999999988643  45889885432              111111            1111  11110 0  1


Q ss_pred             CCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        238 RFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       238 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..++.++.+. .....|.|.+++.+|++.|.|....
T Consensus        65 kgR~tis~d~s~n~v~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          65 KDKATLTVDRSSTTAYIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             hhcceeeeccCcceEEccccccCCCcceEEEeeecC
Confidence            1244444432 2234689999999999999997653

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=96.62  E-value=0.0027  Score=42.46  Aligned_cols=84  Identities=23%  Similarity=0.362  Sum_probs=46.9

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~--~~  239 (286)
                      .+.+|+++.|.|.++|...  ..++|.+..|-              ..+...-....          ..+. ...+  ..
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PG--------------kglEwvg~i~~----------~~~~~~ya~~~kg   66 (118)
T d1nlbh1          11 LKKPGETVKISCKASGYTFTDFSMHWVNQAPG--------------KGLNWMGWVNT----------ETGEPTYADDFKG   66 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEECT----------TTCCEEECGGGSS
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceeccccCCC--------------ccceeeeecCc----------ccccchhhhheee
Confidence            3457999999999998643  45889875432              11111110000          0111 0001  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ++.++.+. .....|.|.+++.+|++.|.| |+..
T Consensus        67 RftisrD~s~~tvyL~~~~L~~eDtAvYYC-Ar~~  100 (118)
T d1nlbh1          67 RFAFSLETSASTAYLQINSLKNEDTATYFC-ARFL  100 (118)
T ss_dssp             SEEEEEEGGGTEEEEEECSCCGGGCEEEEE-EEEC
T ss_pred             eeEEEecCCceeEEeeeeecccCcceEEEE-eeeC
Confidence            34444322 223468999999999999999 4443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.62  E-value=0.0035  Score=41.28  Aligned_cols=81  Identities=17%  Similarity=0.359  Sum_probs=47.1

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC----Ce-eCCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD----GK-PLSP  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~----g~-~~~~  237 (286)
                      .+.+|+++.|.|.++|.-.  ..+.|.+..|.              ..+.+.            .+...    +. ...+
T Consensus        11 ~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PG--------------kglEw~------------g~i~~~~~~~~~~ya~   64 (109)
T d2ck0h1          11 LVQPRGSLKLSCAASGFTFNTDAMNWVRQAPG--------------KGLEWV------------ARIRSKGFNFATYYAD   64 (109)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEE------------EEECCGGGTTCEEECT
T ss_pred             eECCCCCeEEEEEECCCcccccccccceeCCC--------------cceecc------------cccccccccccceecc
Confidence            4457999999999998544  46889875432              111110            01110    00 0011


Q ss_pred             --CCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        238 --RFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       238 --~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                        ..++.++.+. .....|.|.+++.+|++.|.|...
T Consensus        65 ~~kgR~tiS~D~s~~t~~L~i~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          65 SVRDRFTISRDDSQSMLYLQMNNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             TTTTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             ccccCceeccccccceeEecccCCCHhHCEEEEEEEc
Confidence              1244444432 223468999999999999999643

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.60  E-value=0.011  Score=39.62  Aligned_cols=83  Identities=19%  Similarity=0.395  Sum_probs=47.5

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCC--CCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLS--PRF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~--~~~  239 (286)
                      .+.+|+++.|.|.++|...  ..+.|.+..|-              ..+...-....          ..+. ...  -..
T Consensus        12 ~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PG--------------kglEwlg~i~~----------~~~~~~ya~s~kg   67 (122)
T d1vgeh1          12 VKKPGASVKVSCKASGYSFTSYGLHWVRQAPG--------------QRLEWMGWISA----------GTGNTKYSQKFRG   67 (122)
T ss_dssp             EECTTCCEEEEEEECSSCGGGSEEEEEEECTT--------------SCEEEEEEEET----------TTCCEEECGGGTT
T ss_pred             EECCCCCEEEEEEEcCCCccCCCceeeEeCCC--------------CceeeeeeecC----------cccccccccceeE
Confidence            4568999999999998654  45889885432              11111110000          0111 000  112


Q ss_pred             CceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ++-++.+.. ....|.|.+++.+|++.|.|...
T Consensus        68 R~tiS~D~s~ntvyL~~~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          68 RVTFTRDTSATTAYMGLSSLRPEDTAVYYCARD  100 (122)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eeEEeccCCcceeeecccccCCCcceEEEEeec
Confidence            444444322 23368999999999999999654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.60  E-value=0.0027  Score=42.98  Aligned_cols=83  Identities=19%  Similarity=0.368  Sum_probs=47.5

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~~  240 (286)
                      +.+|+++.|.|.++|...  ..++|.+..|.-              .+.+.-..          +..++..- .+  ..+
T Consensus        11 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGk--------------glewv~~i----------~~~~~~~~y~~s~kgR   66 (124)
T d1zvya1          11 VQAGGSLRLSCAASGSTDSIEYMTWFRQAPGK--------------AREGVAAL----------YTHTGNTYYTDSVKGR   66 (124)
T ss_dssp             CCTTCCEEEEEEEESCSTTCCEEEEEEECTTS--------------CCEEEEEE----------ETTTTEEEECGGGTTT
T ss_pred             ECCCCCeEEEEEEcCcccccccccccccCCcc--------------ceEEEeec----------ccccccceeccccccc
Confidence            347999999999998654  358898854321              11111100          00111111 01  124


Q ss_pred             ceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        241 VNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       241 ~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.++.+. .....|.|.+++.+|++.|.|....
T Consensus        67 ~tis~D~s~~t~yLq~~sL~~eDtAvYYCAr~~   99 (124)
T d1zvya1          67 FTISQDKAKNMAYLRMDSVKSEDTAIYTCGATR   99 (124)
T ss_dssp             EEEEEEGGGTEEEEEECSCCGGGCEEEEEEECS
T ss_pred             cEEecccccceeeceeccccCCcceEEEEeecc
Confidence            4444432 2234689999999999999997654

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.59  E-value=0.015  Score=38.72  Aligned_cols=82  Identities=18%  Similarity=0.392  Sum_probs=46.6

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCee-CCC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~-~~~--~~  239 (286)
                      .+.+|+++.|.|.++|.-.  .-++|.+..|-              ..+...-...          ..++.. ..+  ..
T Consensus        11 ~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PG--------------kglEwl~~i~----------~~~~~~~ya~~~~~   66 (117)
T d1mfah1          11 VARPGASVKMSCKASGYTFTNYWMHWIKQRPG--------------QGLEWIGAIY----------PGNSATFYNHKFRA   66 (117)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEEETT--------------TEEEEEEEEE----------TTTTEEEECTTTTT
T ss_pred             eECCCCCEEEEEEEcccCCCCCceEeeeeCCC--------------CcceeeEccC----------ccccccccccccee
Confidence            4457999999999998543  45889874322              2111111000          011111 111  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|..
T Consensus        67 R~t~s~D~s~~~~~L~i~~L~~eDtAvYYCAr   98 (117)
T d1mfah1          67 KTKLTAVTSTTTAYMELSSLTSEDSAVYYCTR   98 (117)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             eEEEEcccCccEeEeeecccCCCcceEEEEec
Confidence            44444432 22346899999999999999954

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.58  E-value=0.014  Score=39.65  Aligned_cols=82  Identities=17%  Similarity=0.374  Sum_probs=46.7

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCC--CCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSP--RFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~--~~~  240 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|.              ..+........          .++. ...+  ..+
T Consensus        12 vkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PG--------------kgLEWlg~I~~----------~~~~~~Ya~s~kgR   67 (135)
T d1ieha_          12 VQPGGSLRVSCAASGFTFSSYHMAWVRQAPG--------------KGLEWVSTINP----------GDGSTYYADSVKGR   67 (135)
T ss_dssp             ECTTCEEEEEEEEESSCTTTSCEEEEEECSS--------------CCCEEEEEECS----------SSCCEEECSTTTTT
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceeccccCCC--------------CceeeeeccCC----------ccccccccccceEe
Confidence            457999999999998654  35889875422              11111111100          0111 0011  124


Q ss_pred             ceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        241 VNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       241 ~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      +.++.+.. ....|.|.+++.+|++.|.|...
T Consensus        68 fTiSrD~s~~t~yL~i~~L~~eDTAvYYCAr~   99 (135)
T d1ieha_          68 FTISRDNAKNTLYLQMNSLKSEDTAVYYCAKY   99 (135)
T ss_dssp             EEEEECTTTCCEEEEEESCCSSSCEEEEEEEB
T ss_pred             EEEeccCCCceeEecEeeeCcccceeeEEEEe
Confidence            44444322 23468999999999999999654

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=96.58  E-value=0.003  Score=40.98  Aligned_cols=64  Identities=11%  Similarity=0.329  Sum_probs=36.1

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee-cC-CC--eeeEEEcccCCCCCeEEEEEEEecc
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD-LD-SF--SSLLSINSVSAAHSGEYTCVASNTA  274 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~-~~-~~--~~~L~i~~v~~~d~G~Y~C~a~N~~  274 (286)
                      ++.+.|.|.+.+-.|. ..++|++++..+.......... .+ ..  ...|.|   ..+|...|+|.+....
T Consensus        16 ~~~vtL~C~a~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~dgty~~~S~L~v---~~~~~~~ytC~V~H~s   84 (96)
T d2h26a1          16 PGRLQLVCHVSGFYPKPVWVMWMRGEQEQQGTQLGDILPNANWTWYLRATLDV---ADGEAAGLSCRVKHSS   84 (96)
T ss_dssp             TTEEEEEEEEEEEBSSCEEEEEEETTEECTTCEECCCEECTTSCEEEEEEEEE---EGGGCTTEEEEEEEGG
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECcccCCCceeCccEeCCCCcEEEEEEEEE---eCccCCEEEEEEEeCC
Confidence            3456666666554444 4788999888765432111111 11 11  223444   4567778999998754

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=96.57  E-value=0.011  Score=39.55  Aligned_cols=83  Identities=16%  Similarity=0.299  Sum_probs=47.1

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~--~~  239 (286)
                      .+.+|+++.|.|.++|...  .-++|.+..|-              ..++..-....          .++. ...+  ..
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PG--------------kgLEwlg~i~~----------~~~~~~y~~~~~g   66 (118)
T d1ct8b1          11 LVKPGASVKLSCKTSGFTFSSSYINWLKQKPG--------------QSLEWIAWIYA----------GSGGTVYNQHFTD   66 (118)
T ss_dssp             EECTTCCEEEEEEEESSCSTTCEEEEEEECTT--------------SCEEEEEEEET----------TTCCEEECTTSTT
T ss_pred             eECCCCCEEEEEEEccccCCCCCCcccEECCC--------------CceEeeeeccc----------cccchhhhhheee
Confidence            3457999999999998654  45889885432              11111100000          0111 1111  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ++.++.+. .....|.|.+++.||++.|.|...
T Consensus        67 R~tis~D~s~~t~yL~i~~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          67 KARLTVDTSSSTAYMQFSSLTTEDSAIYYCARY   99 (118)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             eEEEEecCccceEEecccccCCCcceEEEEeee
Confidence            34444322 223468899999999999999543

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=96.57  E-value=0.0068  Score=40.41  Aligned_cols=30  Identities=10%  Similarity=0.254  Sum_probs=22.5

Q ss_pred             ceEEecCCCEEEEeeEeeecCCeEEEEEcC
Q psy15667        163 KVTAIDGEGLSIKCPVAGYPIEEVHWEKVP  192 (286)
Q Consensus       163 ~~~~~~g~~~~l~c~~~~~p~~~v~w~~~~  192 (286)
                      .+.+.+|++++|.|...+.-...+.|.+..
T Consensus        10 ~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~   39 (112)
T d1fo0b_          10 WRLVPRGQAVNLRCILKNSQYPWMSWYQQD   39 (112)
T ss_dssp             EEECCTTCCEEEEEEESCTTCCEEEEEEEC
T ss_pred             eEEECCCCCEEEEEEEecCCCCcEEEEeEC
Confidence            345668999999998876555678898843

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.57  E-value=0.0075  Score=40.56  Aligned_cols=81  Identities=20%  Similarity=0.407  Sum_probs=46.9

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-C-Cee-CC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-D-GKP-LS--PR  238 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~-g~~-~~--~~  238 (286)
                      +.+|+++.|.|.++|...  -.++|.+..|.              ..+.+            +.|.. + +.. ..  -.
T Consensus        12 vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PG--------------kglew------------lg~i~~~~~~~~y~~~~k   65 (121)
T d1ol0a_          12 VQPGGSLRLSCAASGFTFSSYAMSWFRQAPG--------------KEREI------------VSAVSGSGGSTYYADSVR   65 (121)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCCEE------------EEEECTTSCCEEECGGGT
T ss_pred             ECCCCCeEEEEEEcCcCCcCCceEcceeCCC--------------cceee------------eeecCCcccccccchhee
Confidence            357999999999998543  45889875432              11111            11111 1 110 00  11


Q ss_pred             CCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++.++.+.. ....|.|.+++.+|++.|.|....
T Consensus        66 gR~tis~D~s~~~~~L~i~sL~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          66 GRFTISRDNSKNTLYLQMNSLRAEDTAVYYCAREP  100 (121)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eeeEEeccccceeEEeeeeecccccceEEEEEEec
Confidence            2444444322 234699999999999999996543

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=96.56  E-value=0.0055  Score=41.72  Aligned_cols=88  Identities=19%  Similarity=0.298  Sum_probs=46.7

Q ss_pred             ecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeee--cCCCCCeEEEEeCCeeCCCCCCce
Q psy15667        167 IDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVT--HGDPPLTIRWLKDGKPLSPRFPVN  242 (286)
Q Consensus       167 ~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~--~~~p~~~~~W~~~g~~~~~~~~~~  242 (286)
                      .+|+++.|.|.++|...  -.++|.+..|.              ....+.-...  ...+......+-+.    -..++.
T Consensus        13 kpg~sl~LsC~~SG~~~s~y~~~W~RQ~PG--------------kglewl~~I~~~~~~~~~~~~~y~~~----~kgR~t   74 (127)
T d1i3ua_          13 QAGDSLKLSCEASGDSIGTYVIGWFRQAPG--------------KERIYLATIGRNLVGPSDFYTRYADS----VKGRFA   74 (127)
T ss_dssp             CTTCCEEEEEEEESSCGGGSEEEEEEECTT--------------SCCEEEEEEEEEESSSSCEEEEECTT----TBTTEE
T ss_pred             CCCCCeEEEEEEcCCCCCCCceEeeeeCCc--------------cceeEEEEEccccccCCCCcceechh----hcccee
Confidence            46999999999998643  45889875432              1111100000  00001111111111    112344


Q ss_pred             eeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        243 VSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       243 ~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.+. .....|.|.+++.+|++.|.|.+..
T Consensus        75 is~d~s~~~~~L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          75 VSRDNAKNTVNLQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EEEEGGGTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             EeccCCceEEEEeeecccccceeEEEEEEEe
Confidence            44322 2344689999999999999997654

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.55  E-value=0.002  Score=39.87  Aligned_cols=50  Identities=32%  Similarity=0.598  Sum_probs=31.3

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEE-cCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEE
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFE-LPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACV   81 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~   81 (286)
                      .+|+.+.|.|-..-  .-.|.|.+|+.. +..            .|.   +|+|.=-...|+|.|+|+
T Consensus        19 ~~~~~V~L~C~t~e--E~~I~W~kd~~se~~~------------~Gn---tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          19 APGEMVVLTCDTPE--EDGITWTLDQSSEVLG------------SGK---TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCCEEEEEECSSSC--CSSCEEEETTCCCCCE------------ESS---EEEEEECSGGGCEEEEEE
T ss_pred             CCccEEEEecCCCc--ccccEEeeCCcccccc------------CCC---EEEEEEEeccCCcceeEe
Confidence            35779999993322  236999999754 221            222   133433355689999997

>d1hxma2 b.1.1.2 (A:121-206) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=96.53  E-value=0.0045  Score=39.21  Aligned_cols=66  Identities=14%  Similarity=0.156  Sum_probs=39.9

Q ss_pred             CcEEEEEEeecCCC--CeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcCCEEEE
Q psy15667         18 PAVSLKCIASGNPT--PDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENRAGTCE   90 (286)
Q Consensus        18 ~~~~l~C~~~g~p~--p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~~g~~~   90 (286)
                      +.++|.|.+.|.-+  ..|.|.+||..+........    ..++ .+..+.+.....  ...|+|.+.-......
T Consensus        14 ~~~tl~Cl~~gF~P~~i~v~W~~~g~~~~~~~~~~~----~~~g-tys~~s~~~~~~--~~~yTC~V~H~~~~~~   81 (86)
T d1hxma2          14 NGTNVACLVKEFYPKDIRINLVSSKKITEFDPAIVI----SPSG-KYNAVKLGKYED--SNSVTCSVQHDNKTVH   81 (86)
T ss_dssp             ETTEEEEEEESCBSSCCEEEEECSSEEEECCCEEEE----CTTS-SEEEEEEEEETT--TTTCEEEEEETTEEEE
T ss_pred             CCCEEEEEEeeEECCCCEEEEEECCEEccCcEEeee----ccCC-cEEEEEEEecCC--CCEEEEEEEECCccee
Confidence            45689999999533  37889999987754332211    2222 333344444443  4479999987655443

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.51  E-value=0.0034  Score=41.25  Aligned_cols=66  Identities=21%  Similarity=0.482  Sum_probs=36.5

Q ss_pred             eEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCc-eeee-cCC---CeeeEEEcccCCCCCeEEEEEEEeccc
Q psy15667        210 RTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPV-NVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAA  275 (286)
Q Consensus       210 ~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~-~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g  275 (286)
                      .+.|.|.+..-.| ...|+|+++|..+...... .... .++   ....|.|..-.-.....|+|.+.....
T Consensus        22 ~~tl~C~v~~f~P~~i~v~W~~~g~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          22 KATLVCTITDFYPGVVTVDWKVDGTPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             EEEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             eEEEEEEEeeeeCCCCEEEEEECCEECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            4455555544333 3678999999876432110 0011 111   234455655544568899999987643

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.004  Score=41.06  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=39.6

Q ss_pred             CCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        208 GARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       208 g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      +..+.|.|.+..-.|. ..++|+++|..+.......... .+.   ....|.|..-.......|+|.+.......
T Consensus        21 ~~tv~L~Cl~~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~t~   95 (104)
T d1o0va1          21 PPTIQLLCLVSGYTPGTIQITWLEDGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTF   95 (104)
T ss_dssp             CSEEEEEEEEEEECCCCEEEEEEETTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEE
T ss_pred             CCeEEEEEEEEEEECCCcEEEEEECCEEccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCEeE
Confidence            3456666666543333 4789999998875432111111 111   13345555544445777999999876443

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=96.50  E-value=0.0023  Score=42.88  Aligned_cols=79  Identities=15%  Similarity=0.190  Sum_probs=41.6

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-C-CCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCC---Ce
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-P-TPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVED---GG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p-~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D---~G   76 (286)
                      +|.+....+......++.++|.|.+.|. | ...|+|.+++..    ..... ......++.......-.+..+|   ..
T Consensus        12 ~P~V~l~~p~~~~~~~~~~tL~C~v~gf~P~~i~v~W~~~~~~----~~~~~-~~~~~~dgtys~~S~L~v~~~~W~~~~   86 (111)
T d1pfca_          12 IPEVYLLPPPRNELSKKKVSLTCMITGFYPADINVEWDSSEPS----DYKNT-PPVFDTDGSFFLYSRLKVDTDAWNNGE   86 (111)
T ss_dssp             CCCCCBCCCCSCCCCTTSCCEEEEEESCCSSCCEEESSSCCTT----TEEEE-EEECCSSCCCEEEEEECCCSSCCHHHH
T ss_pred             CCEEEEECCCHHHhcCCceEEEEEEEeeECCCcEEEEeeCCCC----CcEEc-ccEECCCCcEEEEEEEEECHHHhCCCC
Confidence            4555543333322346788999999984 4 358999988632    11111 1111112222222334445544   34


Q ss_pred             EEEEEEEcC
Q psy15667         77 EYACVAENR   85 (286)
Q Consensus        77 ~Y~C~a~n~   85 (286)
                      .|+|.+...
T Consensus        87 ~ytC~V~H~   95 (111)
T d1pfca_          87 SFTCSVMHE   95 (111)
T ss_dssp             CCEEEEEET
T ss_pred             EEEEEEEeC
Confidence            799998764

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.49  E-value=0.0055  Score=40.89  Aligned_cols=82  Identities=20%  Similarity=0.356  Sum_probs=47.2

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CCC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RFP  240 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~~  240 (286)
                      +.+|+++.|.|.++|...  -.++|.+..|-              ..+...-...          ..++..- .+  ..+
T Consensus        12 ~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PG--------------kglewvg~i~----------~~~~~t~ya~s~kgR   67 (117)
T d1jnhb1          12 ARPGASVKLSCRTSGYSFTTYWMQWVRQRPG--------------QGLEWIAAIY----------PGDDDARYTQKFKGK   67 (117)
T ss_dssp             CCTTCCEEEEEEEESSCSSSSEEEEEEECTT--------------SCEEEEEEEE----------GGGTEEEECTTTTTT
T ss_pred             ECCCCCEEEEEEEcCCCCCCCceeeeeeCCC--------------CcceeeeccC----------ccccccccccceeEE
Confidence            347999999999998654  45889885432              1111111000          0111111 11  124


Q ss_pred             ceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        241 VNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       241 ~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      +-++.+.. ...-|.|.+++.+|++.|.|...
T Consensus        68 fTiS~D~s~~t~yLq~~~L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          68 ATLTADRSSSIVYLQLNSLTSEDSAVYSCSRG   99 (117)
T ss_dssp             EEEEEETTTTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             EEEeccCccceeeecccccCCCcceEEEEeec
Confidence            44554332 23468999999999999999653

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.47  E-value=0.022  Score=38.30  Aligned_cols=82  Identities=23%  Similarity=0.343  Sum_probs=48.2

Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~  239 (286)
                      .+.+|+++.|.|.++|....  .++|.+..|-              ..+........          .++... .+  ..
T Consensus        11 ~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PG--------------kglewig~i~~----------~~~~~~ya~s~kg   66 (124)
T d2b1hh1          11 VKKSGESLKISCQTSGYSFSDYWIGWVRQMPG--------------KGLEWMGIFYP----------GDSDSRYSPSFEG   66 (124)
T ss_dssp             EEETTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEEET----------TTTEEEECTTTTT
T ss_pred             eECCCCCEEEEEEEcCCCCcCCcCccceeCCC--------------cceeeeeecCc----------cccccccccccee
Confidence            45679999999999986653  5889885432              22221111110          011111 11  23


Q ss_pred             CceeeecCC-CeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLDS-FSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++.++.+.. ...-|.|.+++.+|++.|.|..
T Consensus        67 R~tiSrD~s~~t~yL~~~~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          67 QVTMSADRSTNTAHLQWSSLKPSDTALYYCAR   98 (124)
T ss_dssp             TCEEEEETTTTEEEEEESSCCGGGCEEEEEEE
T ss_pred             eEEEeecCCCcEEEEeeeccccccceEEEEee
Confidence            455554332 2346899999999999999943

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.47  E-value=0.0032  Score=42.08  Aligned_cols=82  Identities=18%  Similarity=0.337  Sum_probs=46.1

Q ss_pred             EEecCCCEEEEeeEeeec--CCeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYP--IEEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p--~~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~--~~  239 (286)
                      .+.+|++++|.|.++|..  ...++|.+..|.              ....+......          .++. ...+  ..
T Consensus        11 ~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PG--------------kglewl~~i~~----------~~~~~~y~~~~~g   66 (115)
T d1f3dh1          11 LVKPGASVKVSCKASGYSFIDYNIHWVKQSHG--------------KSLEWIGYIVP----------YSGGTTFNQKFKG   66 (115)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEEETT--------------TEEEEEEEECT----------TTCCEEECGGGBT
T ss_pred             EECCCCCEEEEEEEccccCCCCCcceeEEcCC--------------CccEEeeccCC----------CCCcccccceeeE
Confidence            355799999999999853  346889874322              22211111100          0111 0001  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|-.
T Consensus        67 Rftis~D~s~~t~~L~i~~l~~eDtAvYYCAr   98 (115)
T d1f3dh1          67 KATLTVDKSSSTAFMHLNSLTFEDSAVYYCAN   98 (115)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEEeeccCceeeEeeeeecCcCCcEEEEEec
Confidence            34444322 22346999999999999999943

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.47  E-value=0.005  Score=40.46  Aligned_cols=81  Identities=15%  Similarity=0.252  Sum_probs=44.2

Q ss_pred             CCeeEeccccccccCCCcEEEEEEeecC-CC-CeeEEeeCCEEcCCCCeeEeceEE-ecccc--eeEEEEEcccccCCCe
Q psy15667          2 PPILTYSFIEQTLQPGPAVSLKCIASGN-PT-PDIGWTLDGFELPTNNRFVIGQFV-SGHGD--VISHVNISHVTVEDGG   76 (286)
Q Consensus         2 ~p~~~~~~~~~~~~~G~~~~l~C~~~g~-p~-p~v~W~~~~~~l~~~~~~~~~~~~-~~~~~--~~~~l~I~~~~~~D~G   76 (286)
                      +|.+..-...-.-..++.++|.|.+.+. |. ..|+|.+++....    ....... ..++.  ....|+|..-... ..
T Consensus         5 ~PsV~~l~ps~~~~~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~----~~t~~~~~~~~gtys~~S~L~v~~~~w~-~~   79 (103)
T d1c5ch2           5 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSG----VHTFPAVLQSSGLYSLSSVVTVPSSSLG-TQ   79 (103)
T ss_dssp             CCEEEEECCCGGGEETTEEEEEEEEEEEBSSCCEEEEGGGTBCTT----EEECCCEECTTSCEEEEEEEEEEGGGGG-TC
T ss_pred             CCEEEEECCCchhcCCCeEEEEEEEEeEeCCCeEEEECcCCCCCC----EEECCCeECCCCCEEEEEEEEECccccC-CC
Confidence            4555433322222357789999999984 33 4799988774321    1111111 11221  1234666655543 45


Q ss_pred             EEEEEEEcCCE
Q psy15667         77 EYACVAENRAG   87 (286)
Q Consensus        77 ~Y~C~a~n~~g   87 (286)
                      .|+|.+....+
T Consensus        80 ~ytC~V~H~~~   90 (103)
T d1c5ch2          80 TYICNVNHKPS   90 (103)
T ss_dssp             CCEEEEEEGGG
T ss_pred             eEEEEEEeCCC
Confidence            79999987543

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.46  E-value=0.0025  Score=42.18  Aligned_cols=70  Identities=17%  Similarity=0.299  Sum_probs=41.2

Q ss_pred             CCCeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCce---eeecC-C--CeeeEEEcccCCCCCeEEEEEEEecccc
Q psy15667        207 EGARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN---VSDLD-S--FSSLLSINSVSAAHSGEYTCVASNTAAQ  276 (286)
Q Consensus       207 ~g~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~---~~~~~-~--~~~~L~i~~v~~~d~G~Y~C~a~N~~g~  276 (286)
                      .++.+.|.|.+..-.| ...+.|++||..+.......   ....+ .  ..+.|.|..-.-.+...|+|.+......
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~   94 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEVQLPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS   94 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTEECCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTST
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCEECCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCC
Confidence            3456777777665444 37899999999875432111   00111 1  1345666554445677899999876543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.46  E-value=0.0068  Score=40.50  Aligned_cols=76  Identities=18%  Similarity=0.431  Sum_probs=46.2

Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEE---e--CCe-eCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWL---K--DGK-PLS  236 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~---~--~g~-~~~  236 (286)
                      .+.+|+++.|.|.++|....  .++|.+..|.-              .               +.|.   .  ++. ...
T Consensus        11 ~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGk--------------g---------------lewlg~i~~~~~~~~y~   61 (118)
T d2jelh1          11 LVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAK--------------S---------------LEWIGLISTYSGYTNYN   61 (118)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECSSS--------------S---------------EEEEEEECTTTCCEEEC
T ss_pred             eECCCCCEEEEEEEcCCCCCCCceecceeCCCc--------------c---------------cccccccCCcCCcchhh
Confidence            34579999999999987653  58898854321              1               1222   1  111 111


Q ss_pred             C--CCCceeeecC-CCeeeEEEcccCCCCCeEEEEE
Q psy15667        237 P--RFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCV  269 (286)
Q Consensus       237 ~--~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~  269 (286)
                      +  ..++.++.+. .....|.|.+++.+|++.|.|.
T Consensus        62 ~~~kgR~tiS~D~s~~t~~L~~~sL~~eDTAvYYCA   97 (118)
T d2jelh1          62 QKFKGKATMTVDKSSSTAYMELARLTSEDSAIYYCA   97 (118)
T ss_dssp             GGGBTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEE
T ss_pred             hhhcccEEEecccCcceEeecccccccCcceeeeEE
Confidence            1  1234444322 2234689999999999999994

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.45  E-value=0.025  Score=37.93  Aligned_cols=82  Identities=17%  Similarity=0.422  Sum_probs=46.7

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC-e-eCCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-K-PLSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~-~~~~--~~  239 (286)
                      +.+|+++.|.|.++|...  -.+.|.+..|-              ..+.+.-...           .++ . ...+  ..
T Consensus        12 vkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PG--------------kglewl~~i~-----------~~~~~~~y~~s~kg   66 (123)
T d1mqkh_          12 VQPGGSLKLSCAASGFTFSSYTMSWVRQTPE--------------KRLEWVASIN-----------NGGGRTYYPDTVKG   66 (123)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------CCEEEEEEEC-----------TTSSCEECCTTTBT
T ss_pred             ECCCCCEEEEEEECcccCcCCceEeeecCCC--------------cceeeeeecC-----------ccccccccchhccE
Confidence            457999999999998654  35789874422              1111111000           011 1 1111  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++-++.+. .....|.|.+++.+|++.|.|....
T Consensus        67 R~tis~D~s~nt~~L~i~~L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          67 RFTISRDNAKNTLYLQMSSLKSEDTAMYYCVRHE  100 (123)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEecCcccccccceeeeccCcccceeEEecC
Confidence            34444322 2234589999999999999996554

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.44  E-value=0.0046  Score=41.44  Aligned_cols=82  Identities=21%  Similarity=0.408  Sum_probs=45.9

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~  239 (286)
                      .+.+|+++.|.|.++|...  -.+.|.+..|.              ..+...-....          .++..- .+  ..
T Consensus        11 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PG--------------kglewl~~i~~----------~~~~~~y~~s~kg   66 (119)
T d1eapb1          11 LVKPGASVKISCKASGYISTDHAIHWVKQRPE--------------QGLEWIGYISP----------GNGDIKYNEKFKV   66 (119)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECSS--------------SCEEEEEEECT----------TTCCEEECGGGTT
T ss_pred             eECCCCCEEEEEEEccCcccCCCCccceeCCc--------------ccceeeeecCC----------cccchhhhhhhhc
Confidence            3457999999999998654  35889875432              11111100000          011100 00  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|..
T Consensus        67 RftiSrD~s~nt~~L~~~sL~~eDTAvYYCAr   98 (119)
T d1eapb1          67 KATLTADQSSSTAYMQLNSLTSEDSAVYFCKR   98 (119)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEcccCcceEEeeeecccCCcceEEEEEE
Confidence            34444322 22346899999999999999943

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.42  E-value=0.0089  Score=40.04  Aligned_cols=85  Identities=19%  Similarity=0.325  Sum_probs=46.7

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCee-CC--CCC
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-LS--PRF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~-~~--~~~  239 (286)
                      .+.+|+++.|.|.++|.-.  ..++|.+..|-              ..+......... +       -++.. ..  -..
T Consensus        11 ~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PG--------------kglEwv~~i~~~-~-------~~~~t~Ya~s~kg   68 (121)
T d1nfdf1          11 LVQPGSSLKVSCAASGFTFSDFWMYWVRQAPG--------------KGLEWVGRIKNI-P-------NNYATEYADSVRG   68 (121)
T ss_dssp             EECTTCEEEEEEEEESSCGGGEEEEEEEECTT--------------SCEEEEEEECCT-T-------TTTCEEECGGGTT
T ss_pred             eECCCCCEEEEEEEcCCCCcCCceeeceecCC--------------ccceeeeeeccc-c-------cccccccchheee
Confidence            3457999999999998654  34789874422              222222111000 0       00110 00  112


Q ss_pred             CceeeecCC-CeeeEEEcccCCCCCeEEEEEEE
Q psy15667        240 PVNVSDLDS-FSSLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       240 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ++.++.+.. ...-|.|.+++.+|++.|.|...
T Consensus        69 R~tiSrD~s~nt~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          69 RFTISRDDSRNSIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             TBCCEECTTTSEEEEEEESCCGGGCEECEEEEE
T ss_pred             eeEEccccccceeeceecccCCCcceEEEEecc
Confidence            344443322 23358999999999999999654

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.40  E-value=0.0084  Score=40.65  Aligned_cols=82  Identities=13%  Similarity=0.270  Sum_probs=48.9

Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC-CC--
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL-SP--  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~-~~--  237 (286)
                      .+.+|+++.|.|.++|....  .++|.+..|.-.              +..            +.+..  ++... .+  
T Consensus        11 ~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkg--------------lew------------ig~i~~~~~~~~ya~s~   64 (128)
T d2nxyd1          11 VKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQG--------------LEW------------MGRIITILDVAHYAPHL   64 (128)
T ss_dssp             EECTTCCEEEEEEEESSCGGGEEEEEEEECTTSC--------------CEE------------EEEEETTTTEEEECTTT
T ss_pred             eECCCCCEEEEEEEcCCCccCCCcccceeCCCcc--------------eee------------eeecCCcccccccccce
Confidence            34579999999999986553  478987543311              100            11111  11111 11  


Q ss_pred             CCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        238 RFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       238 ~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..++-++.+.. ....|.|.+++.+|++.|.|....
T Consensus        65 kgR~tiS~D~s~~t~yL~~~sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          65 QGRVTITADKSTSTVYLELRNLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             eEEEEEeecCCCceEEeeeeeccccCceEEEEeEEe
Confidence            23455554332 234688999999999999998654

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=96.35  E-value=0.0099  Score=39.24  Aligned_cols=68  Identities=13%  Similarity=0.202  Sum_probs=35.9

Q ss_pred             CCCCCeEEEEEeeecCCCC-CeEEEEeCCeeCCCCCCce--eeecCCC--eeeEEEcccCCCC-CeEEEEEEEeccc
Q psy15667        205 LPEGARTRVICGVTHGDPP-LTIRWLKDGKPLSPRFPVN--VSDLDSF--SSLLSINSVSAAH-SGEYTCVASNTAA  275 (286)
Q Consensus       205 ~~~g~~~~l~c~~~~~~p~-~~~~W~~~g~~~~~~~~~~--~~~~~~~--~~~L~i~~v~~~d-~G~Y~C~a~N~~g  275 (286)
                      +..+..+.|.|.+.+-.|. ..+.|++||..+.......  ....+..  ...|.|   ..+| .-.|+|.+.-...
T Consensus        21 ~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v---~~~~w~~~ytC~V~H~s~   94 (107)
T d1hxmb2          21 TKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTV---PEKSLDKEHRCIVRHENN   94 (107)
T ss_dssp             GGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEE---CTGGGGSCEEEEEEETTS
T ss_pred             HccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEE---ecccCCCeEEEEEEECCC
Confidence            3445566666666543333 5688999988765432110  0111111  223444   4445 3379999987543

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.34  E-value=0.003  Score=42.39  Aligned_cols=83  Identities=20%  Similarity=0.390  Sum_probs=47.6

Q ss_pred             EEecCCCEEEEeeEeeecCC---eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCee-CCC--C
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE---EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKP-LSP--R  238 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~---~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~-~~~--~  238 (286)
                      .+.+|+++.|.|.++|....   -++|.+.+|.              ..+...-...           .++.. ..+  .
T Consensus        11 ~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PG--------------kglEwig~i~-----------~~~~t~y~~s~k   65 (119)
T d1ncwh1          11 LVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPG--------------NKLEWMGYIN-----------YSGFTSHNPSLK   65 (119)
T ss_dssp             EECTTSCEEEEEEEESSCTTSSEEEEEEEEETT--------------TEEEEEEEEE-----------TTSCEEECGGGT
T ss_pred             EECCCCCEEEEEEEccccccCCCccccceECCC--------------cceeeeeecc-----------ccccchhchhcc
Confidence            34579999999999997653   4789875432              2211111110           01110 001  1


Q ss_pred             CCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        239 FPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       239 ~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      .++.++.+. .....|.|.+++.||+..|.|....
T Consensus        66 gR~TiS~D~s~nt~~L~~~sL~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          66 SRISITRDTSKNQFFLQLNSVTTEDTATYYCAGLL  100 (119)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccceEecccccceeeccccccccCCceEEEEeEec
Confidence            234444432 2234689999999999999996443

>d1sy6a1 b.1.1.4 (A:1-81) CD3 gamma chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.34  E-value=0.0045  Score=37.91  Aligned_cols=55  Identities=24%  Similarity=0.352  Sum_probs=36.8

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEc
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAEN   84 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n   84 (286)
                      +..+.|.|.|..   ....++|++|+..+..-.         .+   ..+|.+-+...+--|.|.|.+.+
T Consensus        15 ~~dg~V~L~Cn~---~~k~i~W~kdg~~i~~~~---------~~---~ktlnLG~~~~DPRG~Y~C~~~~   69 (81)
T d1sy6a1          15 QEDGSVLLTCDA---EAKNITWFKDGKMIGFLT---------ED---KKKWNLGSNAKDPRGMYQCKGSQ   69 (81)
T ss_dssp             CSSSEEEEEECS---CSSEEEEEETTEEEEEEE---------SS---CCCEEEEEGGGCCEEEEEEESSS
T ss_pred             ccCCeEEEEeCC---CCcEEEEecCCeEeeccc---------CC---cceeecCCcccCCCcceEcCCCC
Confidence            456789999943   334899999998653100         00   11366777788888999997644

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=96.33  E-value=0.019  Score=38.82  Aligned_cols=82  Identities=17%  Similarity=0.330  Sum_probs=45.3

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeC-Ce-eCCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKD-GK-PLSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~-g~-~~~~--~~  239 (286)
                      +.+|+++.|.|.++|...  ..++|.+..|.              ..+...-..           ..+ +. ...+  ..
T Consensus        11 vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PG--------------kglewl~~i-----------~~~~~~~~y~~~~kg   65 (126)
T d1rjca1          11 VQAGQSLRLSCATSGATSSSNCMGWFRQAPG--------------KEREGVAVI-----------DTGRGNTAYADSVQG   65 (126)
T ss_dssp             ECTTCCEEEEEECC-CTTTCSEEEEEEECTT--------------SCCEEEEEE-----------ETTTCCEEECTTTTT
T ss_pred             ECCCCCeEEEEEECCCCCcCCceEeeeeCCC--------------cceEeeecc-----------cccccccccccccee
Confidence            347999999999998654  45789875432              111110000           011 11 1111  12


Q ss_pred             CceeeecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.++.+.. ....|.|.+++.+|++.|.|....
T Consensus        66 R~tis~D~s~~~~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          66 RLTISLDNAKNTLYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             TEEEEEEC--CEEEEEECSCCGGGCEEEEEEECC
T ss_pred             eEEEEecCCceEEEEEEeccCcccCceeEEEeec
Confidence            344444322 233589999999999999997543

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=96.33  E-value=0.0095  Score=40.19  Aligned_cols=21  Identities=29%  Similarity=0.566  Sum_probs=18.2

Q ss_pred             eeEEEcccCCCCCeEEEEEEE
Q psy15667        251 SLLSINSVSAAHSGEYTCVAS  271 (286)
Q Consensus       251 ~~L~i~~v~~~d~G~Y~C~a~  271 (286)
                      ..|.|.+++.+|+..|.|...
T Consensus        80 ~~L~i~sl~~eDsAvYyCAr~  100 (123)
T d1r0ah1          80 AFLNMMTVETADTAIYYCAQS  100 (123)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             EEcceeecccccceEEeeccc
Confidence            459999999999999999643

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.32  E-value=0.0069  Score=41.05  Aligned_cols=82  Identities=20%  Similarity=0.381  Sum_probs=47.4

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC-CC--
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL-SP--  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~-~~--  237 (286)
                      .+.+|+++.|.|.++|...  ..++|.+..|-              ..+...            .|..  .+... .+  
T Consensus        11 l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pG--------------kglewl------------g~i~~~~~~~~ya~s~   64 (125)
T d1rihh1          11 LAKPGASMKMSCRASGYSFTSYWIHWLKQRPD--------------QGLEWI------------GYIDPATAYTESNQKF   64 (125)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------CCEEEE------------EEEETTTTEEEECGGG
T ss_pred             eECCCCCEEEEEEEccCCCCCCCCccccCCCC--------------ccceee------------eecCCccccccccccc
Confidence            3457999999999998654  45889885432              111111            1111  11110 01  


Q ss_pred             CCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        238 RFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       238 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..++.++.+. .....|.|.+++.+|++.|.|-...
T Consensus        65 ~~R~tis~D~s~n~vyL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          65 KDKAILTADRSSNTAFMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             TTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eeeeEEecccCcceEeeeeeccCcccceEEEEeeeC
Confidence            1234444432 2234689999999999999997543

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.29  E-value=0.011  Score=40.01  Aligned_cols=86  Identities=17%  Similarity=0.364  Sum_probs=47.1

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeCCCCCCcee
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPLSPRFPVNV  243 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~~~~~~~~~  243 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|.              ..+............   ..+.+  .+  ..++-+
T Consensus        12 ~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PG--------------kglEw~~~i~~~~~~---~~y~~--~~--kgR~Ti   70 (127)
T d2fb4h1          12 VQPGRSLRLSCSSSGFIFSSYAMYWVRQAPG--------------KGLEWVAIIWDDGSD---QHYAD--SV--KGRFTI   70 (127)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEECTTSSC---EEECG--GG--BTTEEE
T ss_pred             ECCCCCeEEEEEECCCCccCCceeeeecCCC--------------cceeeeeeccccccc---chhcc--cc--cceEEE
Confidence            347999999999998543  45889875432              112211111100000   00000  00  123444


Q ss_pred             eecCC-CeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        244 SDLDS-FSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       244 ~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      +.+.. ...-|.|.+++.+|++.|.|....
T Consensus        71 s~D~s~~t~yL~~~~L~~eDTA~YYCAr~~  100 (127)
T d2fb4h1          71 SRNDSKNTLFLQMDSLRPEDTGVYFCARDG  100 (127)
T ss_dssp             EEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             eccCCccEEEeeeeeeeecceeEEEEEEec
Confidence            44322 234689999999999999997544

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0064  Score=38.75  Aligned_cols=62  Identities=15%  Similarity=0.242  Sum_probs=32.5

Q ss_pred             CeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCce-eee--cCC--CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        209 ARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVN-VSD--LDS--FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       209 ~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~-~~~--~~~--~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      +.+.|.|.+..-.| ...++|.++|+.+....... ...  ...  ....|.|   ..+|.-.|+|.+.-.
T Consensus        16 ~~~~L~C~a~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~~gt~~~~s~l~v---~~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          16 DKVTLRCWALGFYPADITLTWQLNGEELIQDMELVETRPAGDGTFQKWASVVV---PLGKEQYYTCHVYHQ   83 (89)
T ss_dssp             SEEEEEEEEESCBSSCCEEEEEETTEEECTTCEECCCEECSSSCEEEEEEEEE---ESSTTTTCEEEEECS
T ss_pred             CCEEEEEEEEeEECCCCEEEEEECCEEeCCCEEECcEecCCCCcEEEEEEEEe---cCcCCCEEEEEEEEC
Confidence            45556665543222 35788999998775432111 111  111  1223434   345556899998643

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=96.29  E-value=0.025  Score=38.04  Aligned_cols=82  Identities=16%  Similarity=0.317  Sum_probs=47.5

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC-e-eCCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-K-PLSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~-~~~~--~~  239 (286)
                      +.+|+++.|.|.++|.-.  ..+.|.+..|.              ..+...-...           .++ . ...+  ..
T Consensus        12 vkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PG--------------kglEwv~~i~-----------~~~~~~~Y~~s~kg   66 (125)
T d1op3h1          12 VKAGGSLILSCGVSNFRISAHTMNWVRRVPG--------------GGLEWVASIS-----------TSSTYRDYADAVKG   66 (125)
T ss_dssp             EETTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEEC-----------GGGCCEEECTTTTT
T ss_pred             ECCCCCeEEEEeECCccCcCcccCccccCCC--------------cceeeeeecC-----------cccccccccccccc
Confidence            457999999999988543  45889885432              1111111000           111 1 1111  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|....
T Consensus        67 RftiSrD~s~~t~~Lqm~sL~~eDTAvYYCAr~~  100 (125)
T d1op3h1          67 RFTVSRDDLEDFVYLQMHKMRVEDTAIYYCARKG  100 (125)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEC
T ss_pred             ceEEeccCccceEeeeeeccCCccceeEeEeecc
Confidence            44444432 2334689999999999999997543

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=96.27  E-value=0.0065  Score=41.09  Aligned_cols=82  Identities=22%  Similarity=0.422  Sum_probs=47.4

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC-ee-CCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-KP-LSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~~-~~~--~~  239 (286)
                      +.+|+++.|.|.++|...  ..+.|.+..|-              ..+...-...           .++ .. ..+  ..
T Consensus        12 vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PG--------------kglewl~~i~-----------~~~~~~~y~~s~kg   66 (126)
T d1dfbh1          12 VQPGRSLRLSCAASGFTFNDYAMHWVRQAPG--------------KGLEWVSGIS-----------WDSSSIGYADSVKG   66 (126)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTT--------------SCEEEEEEEC-----------TTSSSEEECGGGTT
T ss_pred             ECCCCCeEEEEEECCccccCCcceeceeCCC--------------ccceeeeecC-----------cccccchhcccccc
Confidence            457999999999998654  35889875432              1111111000           011 10 001  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|....
T Consensus        67 R~tiS~D~s~nt~~L~~~~L~~eDtavYYCAr~~  100 (126)
T d1dfbh1          67 RFTISRDNAKNSLYLQMNSLRAEDMALYYCVKGR  100 (126)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ceEEeccCCCcEEEeeeeeeccCcceEEEEEecc
Confidence            44444432 2234689999999999999997654

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.26  E-value=0.015  Score=39.08  Aligned_cols=82  Identities=20%  Similarity=0.422  Sum_probs=46.6

Q ss_pred             EEecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe--CCeeC-CC--
Q psy15667        165 TAIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK--DGKPL-SP--  237 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~--~g~~~-~~--  237 (286)
                      .+.+|+.++|.|.++|...  .-+.|.+..|.              ..+.            -+.+..  ++... .+  
T Consensus        11 ~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PG--------------kgle------------~l~~i~~~~~~~~y~~~~   64 (121)
T d1j05b_          11 LVEPGASVKLSCTASGFNIKDTYMHWVKQRPE--------------QGLE------------WIGRIDPANGNSKYVPKF   64 (121)
T ss_dssp             EECTTCCEEEEEEEESSCGGGSEEEEEEECTT--------------CCCE------------EEEEEETTTTEEEECGGG
T ss_pred             eECCCCCEEEEEEEecCCCCCCCcceeeECCC--------------Cccc------------cccccCCcCCccccchhh
Confidence            3557999999999987543  46889874322              1111            111111  11110 00  


Q ss_pred             CCCceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        238 RFPVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       238 ~~~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ..++-++.+. .....|.|.+++.+|++.|.|....
T Consensus        65 kgR~tis~D~s~~t~~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          65 QGKATITADTSSNTAYLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             TTTEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEEB
T ss_pred             ccceEEEeecCCceeeecccccCcCcceEEEeEeec
Confidence            1234343322 1234689999999999999996543

>d1jbja1 b.1.1.4 (A:101-186) CD3 gamma chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 gamma chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.26  E-value=0.0041  Score=38.43  Aligned_cols=56  Identities=21%  Similarity=0.407  Sum_probs=0.0

Q ss_pred             cCCCcEEEEEEeecCCCCeeEEeeCCEEcCCCCeeEeceEEecccceeEEEEEcccccCCCeEEEEEEEcC
Q psy15667         15 QPGPAVSLKCIASGNPTPDIGWTLDGFELPTNNRFVIGQFVSGHGDVISHVNISHVTVEDGGEYACVAENR   85 (286)
Q Consensus        15 ~~G~~~~l~C~~~g~p~p~v~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~l~I~~~~~~D~G~Y~C~a~n~   85 (286)
                      ++...|.|.|   .....+++|++++..+..            ......+|.+-+...+--|+|.|.+...
T Consensus        20 ~~dGsV~L~C---n~~~k~i~W~kdg~~i~~------------~~~~~ktlnLG~~~~DPRGiY~C~g~~~   75 (86)
T d1jbja1          20 RGDGSVLLTC---GLTDKTIKWLKDGSIISP------------LNATKNTWNLGNNAKDPRGTYQCQGAKE   75 (86)
T ss_dssp             SSSCEEEEEC---SSSCSCEEEEETTEECCC------------SSCCSSCCEEEETTSCCEEEEEEEESSC
T ss_pred             ccCCeEEEEe---CCCCcEEEEecCCceecc------------cccccceeecCCcccCCCcceEcCCCcc

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=96.26  E-value=0.01  Score=40.15  Aligned_cols=82  Identities=16%  Similarity=0.289  Sum_probs=47.7

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe-C-CeeC-CC--C
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK-D-GKPL-SP--R  238 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~-~-g~~~-~~--~  238 (286)
                      +.+|+++.|.|.++|.-.  ..++|.+..|--              .+...            .|.. + +..- .+  .
T Consensus        12 ~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGk--------------glew~------------g~i~~~~~~~~y~~s~k   65 (127)
T d2fx7h1          12 KRPGSSVTVSCKASGGSFSTYALSWVRQAPGR--------------GLEWM------------GGVIPLLTITNYAPRFQ   65 (127)
T ss_dssp             ECTTCCEEEEEEEESSCSTTSCEEEEEECTTC--------------CEEEE------------EEEEGGGTEEEECGGGT
T ss_pred             ECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCC--------------cceee------------eccCcccccccccceee
Confidence            447999999999998654  358898754321              11111            1111 1 1110 01  1


Q ss_pred             CCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        239 FPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       239 ~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      .++.++.+.. ....|.|.+++.+|++.|.|.....
T Consensus        66 gR~tiSrD~s~~t~yL~~~sL~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          66 GRITITADRSTSTAYLELNSLRPEDTAVYYCAREGT  101 (127)
T ss_dssp             TTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEEEE
T ss_pred             eeEEEeccCccceEeeeecccCcccceEEEEeeccc
Confidence            2444444322 2346899999999999999976543

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=96.24  E-value=0.00092  Score=44.29  Aligned_cols=69  Identities=16%  Similarity=0.309  Sum_probs=37.5

Q ss_pred             CeEEEEEeeecCCC-CCeEEEEeCCeeCCCCCCceeee-cCC---CeeeEEEcccCCCCCeEEEEEEEecccce
Q psy15667        209 ARTRVICGVTHGDP-PLTIRWLKDGKPLSPRFPVNVSD-LDS---FSSLLSINSVSAAHSGEYTCVASNTAAQA  277 (286)
Q Consensus       209 ~~~~l~c~~~~~~p-~~~~~W~~~g~~~~~~~~~~~~~-~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~  277 (286)
                      +.+.|.|.+....| ...|.|.+||..+.......... .+.   ..+.|.|..-..++...|+|.+.......
T Consensus        21 ~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~   94 (104)
T d1nfde2          21 NKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETV   94 (104)
T ss_dssp             TEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTC
T ss_pred             CcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcE
Confidence            34555555544333 35789999998775332111111 111   12344454444456678999999876543

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=96.24  E-value=0.029  Score=37.85  Aligned_cols=82  Identities=22%  Similarity=0.433  Sum_probs=46.9

Q ss_pred             EecCCCEEEEeeEeeecC---CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCe-eCCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI---EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGK-PLSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~---~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~-~~~~--~~  239 (286)
                      +.+|+++.|.|.+.|...   ..+.|.+.+|-              ..+...-...           .++. ...+  ..
T Consensus        12 vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PG--------------kglewl~~i~-----------~~g~~~y~~s~kg   66 (127)
T d3cx5j1          12 VQPSQSLSLTCSVTGYSITSGYYWNWIRLFPG--------------NKLEWVGYIS-----------NVGDNNYNPSLKD   66 (127)
T ss_dssp             ECTTSCEEEEEEEESSCTTTSSEEEEEEEETT--------------TEEEEEEEEE-----------TTSCEEECTTTTT
T ss_pred             ECCCCCEEEEEEEecccccCCCcceeeeECCC--------------cchheeeeec-----------ccccchhcccccc
Confidence            457999999999998754   35789874322              1111111110           0111 1111  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEe
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASN  272 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N  272 (286)
                      ++.++.+. .....|.|.+++.+|++.|.|....
T Consensus        67 R~tis~d~s~nt~yL~l~~l~~eDtAvYyCAr~~  100 (127)
T d3cx5j1          67 RLSITRDTSKNQFFLKLNSVTTEDTATYYCARSE  100 (127)
T ss_dssp             TBCCEEETTTTEEEEEECSCCGGGCEEEEEEEEE
T ss_pred             cceeecccccceeecceeccccccceEEEeeeec
Confidence            34444432 2335689999999999999996543

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=96.23  E-value=0.027  Score=37.97  Aligned_cols=82  Identities=20%  Similarity=0.317  Sum_probs=47.3

Q ss_pred             EEecCCCEEEEeeEeeecCC--eEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCCeeC-CC--CC
Q psy15667        165 TAIDGEGLSIKCPVAGYPIE--EVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDGKPL-SP--RF  239 (286)
Q Consensus       165 ~~~~g~~~~l~c~~~~~p~~--~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g~~~-~~--~~  239 (286)
                      .+.+|+++.|.|.++|....  .++|.+..|-              ..+...-...          ..++... .+  ..
T Consensus        10 ~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PG--------------kglEwvg~i~----------~~~~~~~y~~s~kg   65 (126)
T d1lmka1          10 LMKPGRSLKISCKTTGYIFSNYWIEWVKQRPG--------------HGLEWIGKIL----------PGGGSNTYNDKFKG   65 (126)
T ss_dssp             EECTTCCEEEEEEEESSCTTTEEEEEEEECTT--------------SCEEEEEEEE----------TTTTEEEECGGGTT
T ss_pred             eECCCCCeEEEEEEccCCCCCCCCcceeeCCC--------------ccceeeeecC----------ccccchhhhhhhcc
Confidence            34579999999999986543  4789874432              1111111100          0111111 11  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEE
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVA  270 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a  270 (286)
                      ++-++.+. .....|.|.+++.+|++.|.|..
T Consensus        66 RfTiS~D~s~nt~yL~m~~L~~eDTAvYYCAr   97 (126)
T d1lmka1          66 KATFTADTSSNIAYMQLSSLTSEDSAVYYCAR   97 (126)
T ss_dssp             TEEEEEETTTTEEEEEECSCCGGGCEEEEEEE
T ss_pred             ceEEEecCCccEEEeeecccCCCcceEEEEee
Confidence            44454432 23457899999999999999964

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=96.19  E-value=0.0057  Score=41.24  Aligned_cols=83  Identities=16%  Similarity=0.372  Sum_probs=47.2

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEeCC-e-eCCC--CC
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLKDG-K-PLSP--RF  239 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~~g-~-~~~~--~~  239 (286)
                      +.+|+++.|.|.++|...  -.+.|.+..|-              ......-...           .++ . ...+  ..
T Consensus        12 vkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PG--------------kglewl~~i~-----------~~~~~~~Y~~s~kg   66 (122)
T d1bz7b1          12 VQPGGSRKLSCAASGFTFSNFGMHWVRQAPE--------------KGLEWVAYIS-----------SGGSSINYADTVKG   66 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECSS--------------SCEEEEEEEC-----------SSSSCEEECGGGTT
T ss_pred             ECCCCCeEEEEEEcCCCCcCCceEccccCCC--------------cceeeeeecC-----------cccccccccceeee
Confidence            457999999999998654  35889875432              1111111000           011 0 0000  12


Q ss_pred             CceeeecC-CCeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        240 PVNVSDLD-SFSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       240 ~~~~~~~~-~~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                      ++.++.+. ....-|.|.+++.+|++.|.|...+.
T Consensus        67 RftiSrD~s~~t~yL~m~sL~~eDTAvYYCAr~~~  101 (122)
T d1bz7b1          67 RFTISRDNPKNTLFLQMTSLRSEDTAIYYCTRGGT  101 (122)
T ss_dssp             TEEEEEEGGGTEEEEEECSCCGGGCEEEEEEEECC
T ss_pred             eEEEeccCCccEeEeeeeeecccCceEEEeecCCC
Confidence            34444332 12346889999999999999966543

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=96.17  E-value=0.019  Score=38.50  Aligned_cols=82  Identities=22%  Similarity=0.478  Sum_probs=47.3

Q ss_pred             EecCCCEEEEeeEeeecC--CeEEEEEcCCcccccccccCCCCCCCeEEEEEeeecCCCCCeEEEEe---CC-e-eCCC-
Q psy15667        166 AIDGEGLSIKCPVAGYPI--EEVHWEKVPPKIESFAFPFDGLPEGARTRVICGVTHGDPPLTIRWLK---DG-K-PLSP-  237 (286)
Q Consensus       166 ~~~g~~~~l~c~~~~~p~--~~v~w~~~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~p~~~~~W~~---~g-~-~~~~-  237 (286)
                      +.+|+++.|.|.++|...  ..++|.+..|--              .+.+.            .+..   ++ . ...+ 
T Consensus        12 vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGk--------------glewv------------~~i~~~~~~~~~~Y~~s   65 (122)
T d1q9rb1          12 VQSGGSLRLSCATSGFTFTDYYMSWVRQPPGK--------------ALEWL------------GFIRNKANGYTTEYSPS   65 (122)
T ss_dssp             ECTTCCEEEEEEEESSCGGGSCEEEEEECTTS--------------CCEEE------------EEECCGGGTTCEEECTT
T ss_pred             ECCCCCEEEEEEEcCCCCcCCccCccccCCCc--------------ceeee------------eeccccccCCcchhchh
Confidence            457999999999998644  358898754321              11110            0110   00 0 0011 


Q ss_pred             -CCCceeeecCC-CeeeEEEcccCCCCCeEEEEEEEec
Q psy15667        238 -RFPVNVSDLDS-FSSLLSINSVSAAHSGEYTCVASNT  273 (286)
Q Consensus       238 -~~~~~~~~~~~-~~~~L~i~~v~~~d~G~Y~C~a~N~  273 (286)
                       ..++.++.+.. ....|.|.+++.+|++.|.|.....
T Consensus        66 ~kgRftiSrD~s~nt~~L~~~sL~~eDTAvYYCar~~~  103 (122)
T d1q9rb1          66 VKGRFTISRDNSQSILYLQMNTLRAEDSATYYCARDHD  103 (122)
T ss_dssp             TBTTEEEEEETTTTEEEEEECSCCGGGCEEEEEEECCC
T ss_pred             eeecceeeeecccceeccceeeeccCcceEEEEEecCC
Confidence             12444444322 2346899999999999999976443