Psyllid ID: psy15717

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--
Protein Sequence
MSRVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEADDD
Secondary Structure (PSIPRED)
cccccccccccEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccc
Secondary Structure Prediction (SSPRO)
cccEEEccccEEEEEccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccccccc
Coil and Loop (DISEMBL)
msrverngageIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNhikleaddd
Flexible Loop (DISEMBL)
msrverngageifvdlikrnseksleESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKfgnhikleaddd
Low Complexity Region (SEG)
MSRVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEADDD
Disordered region (IsUnstruct)
***********IFVDL*******************************TVMSDLKTHLYAKFGNHI*******
Disordered Region (DISOPRED)
**RVERNGAGEIFVDLIKRN**************************KTVMSDLKTHLYAKFGNHIKL*****
Disordered Region (DISEMBL)
MSRVERNGAGEIFVDLIKRNSE********NIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEADDD
Disordered Region (DISPRO)
**RV*RNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN*IK******
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSRVERNGAGEIFVDLIKRNSxxxxxxxxxxxxxxxxxxxxxMSSIKTVMSDLKTHLYAKFGNHIKLEADDD
Positional Conservation
no confident homologs detected

---

Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	72	2.2.26 [Sep-21-2011]
Q2TBR6	134	Prefoldin subunit 4 OS=Bo	yes	N/A	0.861	0.462	0.403	9e-09
Q9NQP4	134	Prefoldin subunit 4 OS=Ho	yes	N/A	0.861	0.462	0.403	1e-08
Q9VRL3	138	Probable prefoldin subuni	yes	N/A	0.861	0.449	0.370	7e-06

>sp|Q2TBR6|PFD4_BOVIN Prefoldin subunit 4 OS=Bos taurus GN=PFDN4 PE=2 SV=1

 Score = 58.9 bits (141), Expect = 9e-09,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 72  GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query: 70  DD 71
           D+
Sbjct: 132 DE 133

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.
Bos taurus (taxid: 9913)

>sp|Q9NQP4|PFD4_HUMAN Prefoldin subunit 4 OS=Homo sapiens GN=PFDN4 PE=1 SV=1

 Score = 58.9 bits (141), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 72  GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query: 70  DD 71
           D+
Sbjct: 132 DE 133

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Homo sapiens (taxid: 9606)

>sp|Q9VRL3|PFD4_DROME Probable prefoldin subunit 4 OS=Drosophila melanogaster GN=CG10635 PE=3 SV=1

 Score = 49.3 bits (116), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GE+F+      ++  L+E+++ +  +IA +E     IK  M +LK HLY +FG++I LEA
Sbjct: 77  GEVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLEA 136

Query: 70  DD 71
           +D
Sbjct: 137 ED 138

Binds specifically to cytosolic chaperonin (c-CPN) and transfers target proteins to it. Binds to nascent polypeptide chain and promotes folding in an environment in which there are many competing pathways for nonnative proteins.

Drosophila melanogaster (taxid: 7227)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
321470023	138	hypothetical protein DAPPUDRAFT_196440 [	0.875	0.456	0.507	5e-10
327288180	134	PREDICTED: prefoldin subunit 4-like [Ano	0.875	0.470	0.460	2e-09
156552663	137	PREDICTED: prefoldin subunit 4-like [Nas	0.875	0.459	0.460	3e-08
225714178	129	Prefoldin subunit 4 [Lepeophtheirus salm	0.875	0.488	0.460	3e-08
149734208	134	PREDICTED: prefoldin subunit 4-like [Equ	0.861	0.462	0.419	6e-08
387914106	134	prefoldin subunit 4-like isoform 2 [Call	0.875	0.470	0.428	7e-08
392883688	134	prefoldin subunit 4-like isoform 2 [Call	0.875	0.470	0.428	8e-08
410953532	251	PREDICTED: uncharacterized protein LOC10	0.861	0.247	0.419	9e-08
281351075	126	hypothetical protein PANDA_000776 [Ailur	0.861	0.492	0.419	1e-07
359322695	133	PREDICTED: prefoldin subunit 4-like [Can	0.861	0.466	0.419	1e-07

>gi|321470023|gb|EFX81001.1| hypothetical protein DAPPUDRAFT_196440 [Daphnia pulex]

 Score = 68.6 bits (166), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 32/63 (50%), Positives = 47/63 (74%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GE+FV     ++++ LEE++  +K DI +IE   ++IKT+MSDLKT LYAKFGN I LEA
Sbjct: 76  GEVFVHFNMEDAKEKLEEAKDKVKKDIEAIEAECTNIKTLMSDLKTQLYAKFGNSINLEA 135

Query: 70  DDD 72
           +++
Sbjct: 136 EEE 138

Source: Daphnia pulex

Species: Daphnia pulex

Genus: Daphnia

Family: Daphniidae

Order: Diplostraca

Class: Branchiopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|327288180|ref|XP_003228806.1| PREDICTED: prefoldin subunit 4-like [Anolis carolinensis]

 Score = 66.6 bits (161), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 48/63 (76%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE++QN++ +I ++E  + SI+ V+SDLK  LYAKFGN+I LEA
Sbjct: 72  GDVFISHPQDETQEMLEEAKQNLQEEIGALESRVESIQRVLSDLKVQLYAKFGNNINLEA 131

Query: 70  DDD 72
           DD+
Sbjct: 132 DDN 134

Source: Anolis carolinensis

Species: Anolis carolinensis

Genus: Anolis

Family: Iguanidae

Order: Squamata

Phylum: Chordata

Superkingdom: Eukaryota

>gi|156552663|ref|XP_001599576.1| PREDICTED: prefoldin subunit 4-like [Nasonia vitripennis]

 Score = 62.8 bits (151), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 46/63 (73%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GEIFVD     +   LE++R   + +I S+E+  ++++++M++LKT LYAKFGNHI LEA
Sbjct: 75  GEIFVDQDLSKTLSCLEDARVKKEKEIVSLEEQCTTLRSMMTELKTQLYAKFGNHINLEA 134

Query: 70  DDD 72
           D++
Sbjct: 135 DEE 137

Source: Nasonia vitripennis

Species: Nasonia vitripennis

Genus: Nasonia

Family: Pteromalidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|225714178|gb|ACO12935.1| Prefoldin subunit 4 [Lepeophtheirus salmonis] gi|290562876|gb|ADD38832.1| Prefoldin subunit 4 [Lepeophtheirus salmonis]

 Score = 62.4 bits (150), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 29/63 (46%), Positives = 44/63 (69%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GE+F+ +    +E  L++ ++ I+ + + I   M  I++VMSDLKTHLYAKFGN I L+A
Sbjct: 67  GEVFLSMKSDEAETQLDQRKEAIQKESSQINVKMDEIRSVMSDLKTHLYAKFGNAINLDA 126

Query: 70  DDD 72
           DD+
Sbjct: 127 DDE 129

Source: Lepeophtheirus salmonis

Species: Lepeophtheirus salmonis

Genus: Lepeophtheirus

Family: Caligidae

Order: Siphonostomatoida

Class: Maxillopoda

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|149734208|ref|XP_001488806.1| PREDICTED: prefoldin subunit 4-like [Equus caballus]

 Score = 61.6 bits (148), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 48/62 (77%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +IA++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 72  GDVFISHSQEETQEMLEEAKKNLQEEIAALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query: 70  DD 71
           D+
Sbjct: 132 DE 133

Source: Equus caballus

Species: Equus caballus

Genus: Equus

Family: Equidae

Order: Perissodactyla

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387914106|gb|AFK10662.1| prefoldin subunit 4-like isoform 2 [Callorhinchus milii]

 Score = 61.2 bits (147), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 46/63 (73%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GE+F+   +  +++ LE ++Q ++ +I S++  + +I+ V+SDLK  LYAKFGN+I LEA
Sbjct: 72  GEVFISHSQDGTQEMLEAAKQCLQDEIQSLQSRVEAIQQVLSDLKVQLYAKFGNNINLEA 131

Query: 70  DDD 72
           DD+
Sbjct: 132 DDN 134

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392883688|gb|AFM90676.1| prefoldin subunit 4-like isoform 2 [Callorhinchus milii]

 Score = 61.2 bits (147), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 27/63 (42%), Positives = 46/63 (73%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           GE+F+   +  +++ LE ++Q ++ +I S++  + +I+ V+SDLK  LYAKFGN+I LEA
Sbjct: 72  GEVFISHSQDETQEMLEAAKQCLQDEIQSLQSRVEAIQQVLSDLKVQLYAKFGNNINLEA 131

Query: 70  DDD 72
           DD+
Sbjct: 132 DDN 134

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|410953532|ref|XP_003983424.1| PREDICTED: uncharacterized protein LOC101095889 [Felis catus]

 Score = 60.8 bits (146), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 47/62 (75%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 189 GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLADLKVQLYAKFGSNINLEA 248

Query: 70  DD 71
           DD
Sbjct: 249 DD 250

Source: Felis catus

Species: Felis catus

Genus: Felis

Family: Felidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|281351075|gb|EFB26659.1| hypothetical protein PANDA_000776 [Ailuropoda melanoleuca]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 47/62 (75%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 64  GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLADLKVQLYAKFGSNINLEA 123

Query: 70  DD 71
           DD
Sbjct: 124 DD 125

Source: Ailuropoda melanoleuca

Species: Ailuropoda melanoleuca

Genus: Ailuropoda

Family: Ursidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

>gi|359322695|ref|XP_003639895.1| PREDICTED: prefoldin subunit 4-like [Canis lupus familiaris]

 Score = 60.8 bits (146), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/62 (41%), Positives = 47/62 (75%)

Query: 10  GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
           G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct: 71  GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLADLKVQLYAKFGSNINLEA 130

Query: 70  DD 71
           DD
Sbjct: 131 DD 132

Source: Canis lupus familiaris

Species: Canis lupus

Genus: Canis

Family: Canidae

Order: Carnivora

Class: Mammalia

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	72
UNIPROTKB|F1NP43	137	PFDN4 "Uncharacterized protein	0.861	0.452	0.419	7.4e-11
UNIPROTKB|F1PHE6	135	LOC100855575 "Uncharacterized	0.861	0.459	0.419	9.4e-11
UNIPROTKB|A5GHK3	134	PFDN4 "Uncharacterized protein	0.861	0.462	0.403	1.5e-10
UNIPROTKB|F1MYY3	133	PFDN4 "Prefoldin subunit 4" [B	0.861	0.466	0.403	2e-10
UNIPROTKB|Q2TBR6	134	PFDN4 "Prefoldin subunit 4" [B	0.861	0.462	0.403	2e-10
UNIPROTKB|J9P9H1	134	PFDN4 "Uncharacterized protein	0.861	0.462	0.419	2e-10
UNIPROTKB|E9PQY2	136	PFDN4 "Prefoldin subunit 4" [H	0.861	0.455	0.403	2e-10
UNIPROTKB|Q9NQP4	134	PFDN4 "Prefoldin subunit 4" [H	0.861	0.462	0.403	2e-10
ZFIN|ZDB-GENE-100922-122	136	pfdn4 "prefoldin subunit 4" [D	0.861	0.455	0.403	1.1e-09
FB|FBgn0035603	138	CG10635 [Drosophila melanogast	0.861	0.449	0.370	4.2e-08

UNIPROTKB|F1NP43 PFDN4 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 151 (58.2 bits), Expect = 7.4e-11, P = 7.4e-11
 Identities = 26/62 (41%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE++++++ +I ++E  + SI+ V+SDLK  LYAKFGN+I LEA
Sbjct:    75 GDVFISHSQEETQEMLEEAKKSLQEEIETLESRVESIQRVLSDLKVQLYAKFGNNINLEA 134

Query:    70 DD 71
             +D
Sbjct:   135 ED 136

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0005739 "mitochondrion" evidence=IEA

UNIPROTKB|F1PHE6 LOC100855575 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 150 (57.9 bits), Expect = 9.4e-11, P = 9.4e-11
 Identities = 26/62 (41%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct:    73 GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLADLKVQLYAKFGSNINLEA 132

Query:    70 DD 71
             DD
Sbjct:   133 DD 134

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|A5GHK3 PFDN4 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 148 (57.2 bits), Expect = 1.5e-10, P = 1.5e-10
 Identities = 25/62 (40%), Positives = 48/62 (77%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  ++SI+ V++DLK  LYAKFG++I LEA
Sbjct:    72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVASIQRVLADLKVQLYAKFGSNINLEA 131

Query:    70 DD 71
             D+
Sbjct:   132 DE 133

GO:0005739 "mitochondrion" evidence=IEA

GO:0005634 "nucleus" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|F1MYY3 PFDN4 "Prefoldin subunit 4" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct:    71 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 130

Query:    70 DD 71
             D+
Sbjct:   131 DE 132

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|Q2TBR6 PFDN4 "Prefoldin subunit 4" [Bos taurus (taxid:9913)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct:    72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query:    70 DD 71
             D+
Sbjct:   132 DE 133

GO:0051086 "chaperone mediated protein folding independent of cofactor" evidence=TAS

GO:0006457 "protein folding" evidence=TAS

GO:0005829 "cytosol" evidence=TAS

GO:0005634 "nucleus" evidence=ISS

GO:0005739 "mitochondrion" evidence=ISS

GO:0005737 "cytoplasm" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

UNIPROTKB|J9P9H1 PFDN4 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 26/62 (41%), Positives = 46/62 (74%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V+ DLK  LYAKFG++I LEA
Sbjct:    72 GDVFISHSQEETQEMLEEAKKNLQEEIDALEARVESIQRVLVDLKVQLYAKFGSNINLEA 131

Query:    70 DD 71
             DD
Sbjct:   132 DD 133

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

UNIPROTKB|E9PQY2 PFDN4 "Prefoldin subunit 4" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct:    72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query:    70 DD 71
             D+
Sbjct:   132 DE 133

GO:0006457 "protein folding" evidence=IEA

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

UNIPROTKB|Q9NQP4 PFDN4 "Prefoldin subunit 4" [Homo sapiens (taxid:9606)]

 Score = 147 (56.8 bits), Expect = 2.0e-10, P = 2.0e-10
 Identities = 25/62 (40%), Positives = 47/62 (75%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LEE+++N++ +I ++E  + SI+ V++DLK  LYAKFG++I LEA
Sbjct:    72 GDVFISHSQEETQEMLEEAKKNLQEEIDALESRVESIQRVLADLKVQLYAKFGSNINLEA 131

Query:    70 DD 71
             D+
Sbjct:   132 DE 133

GO:0016272 "prefoldin complex" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=TAS

GO:0051087 "chaperone binding" evidence=TAS

GO:0005829 "cytosol" evidence=NAS

GO:0005739 "mitochondrion" evidence=IDA

GO:0005737 "cytoplasm" evidence=IDA

GO:0005634 "nucleus" evidence=IDA

GO:0005515 "protein binding" evidence=IPI

GO:0044267 "cellular protein metabolic process" evidence=TAS

GO:0051084 "'de novo' posttranslational protein folding" evidence=TAS

ZFIN|ZDB-GENE-100922-122 pfdn4 "prefoldin subunit 4" [Danio rerio (taxid:7955)]

 Score = 140 (54.3 bits), Expect = 1.1e-09, P = 1.1e-09
 Identities = 25/62 (40%), Positives = 45/62 (72%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             G++F+   +  +++ LE +++ ++ +I ++E  +SSI+ V+ DLK  LYAKFGN+I LEA
Sbjct:    74 GDVFISHSQEETQEMLEAAKEALQEEIKALEGRVSSIQGVLGDLKVQLYAKFGNNINLEA 133

Query:    70 DD 71
             D+
Sbjct:   134 DE 135

GO:0016272 "prefoldin complex" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

GO:0051082 "unfolded protein binding" evidence=IEA

FB|FBgn0035603 CG10635 [Drosophila melanogaster (taxid:7227)]

 Score = 125 (49.1 bits), Expect = 4.2e-08, P = 4.2e-08
 Identities = 23/62 (37%), Positives = 39/62 (62%)

Query:    10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEA 69
             GE+F+      ++  L+E+++ +  +IA +E     IK  M +LK HLY +FG++I LEA
Sbjct:    77 GEVFLSHKLEKTQDMLKETKEQVLKEIAGVEAKAKVIKAEMDELKAHLYQRFGSNISLEA 136

Query:    70 DD 71
             +D
Sbjct:   137 ED 138

GO:0006458 "'de novo' protein folding" evidence=ISS

GO:0016272 "prefoldin complex" evidence=ISS;IDA

GO:0051087 "chaperone binding" evidence=ISS

GO:0051082 "unfolded protein binding" evidence=IEA

GO:0006457 "protein folding" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	72
KOG1760|consensus	131		99.96
PF01920	106	Prefoldin_2: Prefoldin subunit; InterPro: IPR00277	99.49
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	99.08
COG1382	119	GimC Prefoldin, chaperonin cofactor [Posttranslati	99.02
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	98.7
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	98.08
PRK09343	121	prefoldin subunit beta; Provisional	97.97
PRK14011	144	prefoldin subunit alpha; Provisional	97.25
PF02996	120	Prefoldin: Prefoldin subunit; InterPro: IPR004127	97.24
PRK03947	140	prefoldin subunit alpha; Reviewed	97.14
cd00584	129	Prefoldin_alpha Prefoldin alpha subunit; Prefoldin	97.13
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	96.89
KOG3478|consensus	120		96.85
COG1730	145	GIM5 Predicted prefoldin, molecular chaperone impl	94.31
PRK01203	130	prefoldin subunit alpha; Provisional	94.14
PF08286	118	Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252	93.65
PF06632	342	XRCC4: DNA double-strand break repair and V(D)J re	93.01
KOG4196|consensus	135		91.08
KOG4098|consensus	140		90.14
COG4064	75	MtrG Tetrahydromethanopterin S-methyltransferase,	89.59
PF07195	239	FliD_C: Flagellar hook-associated protein 2 C-term	89.43
PF08199	37	E2: Bacteriophage E2-like protein; InterPro: IPR01	87.92
PF04201	162	TPD52: Tumour protein D52 family; InterPro: IPR007	87.83
KOG3501|consensus	114		86.99
PF05529	192	Bap31: B-cell receptor-associated protein 31-like	86.44
PRK06798	440	fliD flagellar capping protein; Validated	86.36
TIGR00293	126	prefoldin, archaeal alpha subunit/eukaryotic subun	86.27
PF08946	46	Osmo_CC: Osmosensory transporter coiled coil; Inte	85.74
PRK08032	462	fliD flagellar capping protein; Reviewed	84.09
PRK09343	121	prefoldin subunit beta; Provisional	83.53
PRK07737	501	fliD flagellar capping protein; Validated	83.13
KOG4010|consensus	208		83.02
smart00338	65	BRLZ basic region leucin zipper.	83.0
PF04977	80	DivIC: Septum formation initiator; InterPro: IPR00	82.6
cd00632	105	Prefoldin_beta Prefoldin beta; Prefoldin is a hexa	82.58
PF02183	45	HALZ: Homeobox associated leucine zipper; InterPro	81.59
PRK06664	661	fliD flagellar hook-associated protein FliD; Valid	81.44
PF06156	107	DUF972: Protein of unknown function (DUF972); Inte	80.75
PF07106	169	TBPIP: Tat binding protein 1(TBP-1)-interacting pr	80.61
cd00890	129	Prefoldin Prefoldin is a hexameric molecular chape	80.3
PF05565	162	Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840	80.24
TIGR02338	110	gimC_beta prefoldin, beta subunit, archaeal. Chape	80.04

>KOG1760|consensus

Probab=99.96  E-value=6.8e-29  Score=158.24  Aligned_cols=68  Identities=32%  Similarity=0.576  Sum_probs=66.4

Q ss_pred             cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccCCCC
Q psy15717          3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLEAD   70 (72)
Q Consensus         3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~InLe~~   70 (72)
                      ..|||+||+||+|++.+.++++||+.++.+.++|+.|+++++.|..+|.+||++||||||++||||++
T Consensus        64 ~~Ip~~vGdvF~~~~~~~~~~~LEe~ke~l~k~i~~les~~e~I~~~m~~LK~~LYaKFgdnINLeae  131 (131)
T KOG1760|consen   64 EDIPFKVGDVFIHVKLDKLQDQLEEKKETLEKEIEELESELESISARMDELKKVLYAKFGDNINLEAE  131 (131)
T ss_pred             cccceehhhhheeccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccCccCC
Confidence            47999999999999999999999999999999999999999999999999999999999999999985

>PF01920 Prefoldin_2: Prefoldin subunit; InterPro: IPR002777 Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea

Probab=99.49  E-value=1.3e-13  Score=83.53  Aligned_cols=62  Identities=26%  Similarity=0.497  Sum_probs=58.2

Q ss_pred             cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCC
Q psy15717          3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNH   64 (72)
Q Consensus         3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~   64 (72)
                      .++|..||.|||..|.+++.+.|+...+.++.+|++++..+..+..+|.+++..||++||++
T Consensus        45 ~~~y~~vG~~fv~~~~~~~~~~L~~~~~~~~~~i~~l~~~~~~l~~~l~~~~~~l~~~~~~q  106 (106)
T PF01920_consen   45 RKVYKSVGKMFVKQDKEEAIEELEERIEKLEKEIKKLEKQLKYLEKKLKELKKKLYELFGQQ  106 (106)
T ss_dssp             -EEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCS--
T ss_pred             chhHHHHhHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCC
Confidence            47888999999999999999999999999999999999999999999999999999999985

Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal beta subunit, eukaryotic prefoldin subunits 1, 2, 4 and 6. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 2ZDI_B 3AEI_B 2ZQM_A 1FXK_A.

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=99.08  E-value=3.6e-10  Score=69.60  Aligned_cols=57  Identities=16%  Similarity=0.270  Sum_probs=54.5

Q ss_pred             CcccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          2 SRVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus         2 ~~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      .+++++.||.|||+.|.++|...|+...+.++.+|++++..++.+..+|.+||..|-
T Consensus        45 d~~vy~~VG~vfv~~~~~ea~~~Le~~~e~le~~i~~l~~~~~~l~~~~~elk~~l~  101 (105)
T cd00632          45 DAEVYKLVGNVLVKQEKEEARTELKERLETIELRIKRLERQEEDLQEKLKELQEKIQ  101 (105)
T ss_pred             cchHHHHhhhHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            467889999999999999999999999999999999999999999999999999874

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>COG1382 GimC Prefoldin, chaperonin cofactor [Posttranslational modification, protein turnover, chaperones]

Probab=99.02  E-value=1.1e-09  Score=69.70  Aligned_cols=65  Identities=15%  Similarity=0.330  Sum_probs=61.9

Q ss_pred             ccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCccCC
Q psy15717          4 VERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIKLE   68 (72)
Q Consensus         4 ~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~~InLe   68 (72)
                      +|...+|+.||..+.+.|.+.|+...+.++-+|+.|+...+.+.++..+|+..||++||..+|..
T Consensus        54 ~vYk~VG~llvk~~k~~~~~eL~er~E~Le~ri~tLekQe~~l~e~l~eLq~~i~~~l~~~~~~~  118 (119)
T COG1382          54 PVYKKVGNLLVKVSKEEAVDELEERKETLELRIKTLEKQEEKLQERLEELQSEIQKALGDAANGG  118 (119)
T ss_pred             HHHHHhhhHHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccccCC
Confidence            45566999999999999999999999999999999999999999999999999999999999875

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=98.70  E-value=1e-07  Score=59.26  Aligned_cols=59  Identities=12%  Similarity=0.255  Sum_probs=55.1

Q ss_pred             Ccccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717          2 SRVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK   60 (72)
Q Consensus         2 ~~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak   60 (72)
                      +++|++.|| ++||+.+.++|.+.|++..+.+++.++.++..+..+..+|..|+..|=.+
T Consensus        68 ~~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~l~~~l~~~  127 (129)
T cd00890          68 DDKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQITELQEELQQL  127 (129)
T ss_pred             CCEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            467889999 99999999999999999999999999999999999999999999987543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=98.08  E-value=2.3e-05  Score=48.56  Aligned_cols=57  Identities=11%  Similarity=0.324  Sum_probs=52.6

Q ss_pred             cccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717          5 ERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus         5 v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      +.-.||.+||..+.++|...|+...+.++..|..|+.....+..++.++...|..-+
T Consensus        52 vyk~VG~vlv~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l~e~q~~l~~~~  108 (110)
T TIGR02338        52 VYKSVGNLLVKTDKEEAIQELKEKKETLELRVKTLQRQEERLREQLKELQEKIQEAL  108 (110)
T ss_pred             hHHHhchhhheecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            333499999999999999999999999999999999999999999999999987654

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

>PRK09343 prefoldin subunit beta; Provisional

Probab=97.97  E-value=3.8e-05  Score=48.61  Aligned_cols=58  Identities=16%  Similarity=0.309  Sum_probs=51.6

Q ss_pred             ccccc-cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717          4 VERNG-AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus         4 ~v~y~-iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      ...|+ ||.+||..|.++|...|++..+-++.+|..|+...+.++..+.++...|..-+
T Consensus        54 ~~VYk~VG~vlv~qd~~e~~~~l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll  112 (121)
T PRK09343         54 TPIYKIVGNLLVKVDKTKVEKELKERKELLELRSRTLEKQEKKLREKLKELQAKINEML  112 (121)
T ss_pred             chhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455 99999999999999999999999999999999999999999999988876544

>PRK14011 prefoldin subunit alpha; Provisional

Probab=97.25  E-value=0.0029  Score=41.36  Aligned_cols=60  Identities=10%  Similarity=0.211  Sum_probs=53.9

Q ss_pred             Ccccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717          2 SRVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus         2 ~~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      +++|..-|| ..||..+.++|.+.+++..+.+++.+++|...+..+...+.+|...|=+|+
T Consensus        69 ~dkVlVdIGtGy~VEk~~~eA~~~~~~ri~~l~~~~~~l~~~i~~~~~~~~~l~~~L~~k~  129 (144)
T PRK14011         69 PDKAILGVGSDIYLEKDVSEVIEDFKKSVEELDKTKKEGNKKIEELNKEITKLRKELEKRA  129 (144)
T ss_pred             CCeEEEEccCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            356777777 589999999999999999999999999999999999999999998887764

>PF02996 Prefoldin: Prefoldin subunit; InterPro: IPR004127 This entry comprises of several prefoldin subunits

Probab=97.24  E-value=0.0018  Score=39.79  Aligned_cols=57  Identities=11%  Similarity=0.261  Sum_probs=49.0

Q ss_pred             cccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717          3 RVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA   59 (72)
Q Consensus         3 ~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa   59 (72)
                      ++|...|| +.|+.++.++|.+.+......+++.+++++.++..+..++..+-..+-.
T Consensus        59 ~~vlV~lG~~~~vE~s~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~~~~~~~l~~  116 (120)
T PF02996_consen   59 DKVLVSLGAGYYVEMSLEEAIEFLKKRIKELEEQLEKLEKELAELQAQIEQLEQTLQQ  116 (120)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHH
T ss_pred             CEEEEEeeCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555 5899999999999999999999999999999999999999888776643

Prefoldin (PFD) is a chaperone that interacts exclusively with type II chaperonins, hetero-oligomers lacking an obligate co-chaperonin that are found only in eukaryotes (chaperonin-containing T-complex polypeptide-1 (CCT)) and archaea. Eukaryotic PFD is a multi-subunit complex containing six polypeptides in the molecular mass range of 14-23 kDa. In archaea, on the other hand, PFD is composed of two types of subunits, two alpha and four beta. The six subunits associate to form two back-to-back up-and-down eight-stranded barrels, from which hang six coiled coils. Each subunit contributes one (beta subunits) or two (alpha subunits) beta hairpin turns to the barrels. The coiled coils are formed by the N and C termini of an individual subunit. Overall, this unique arrangement resembles a jellyfish. The eukaryotic PFD hexamer is composed of six different subunits; however, these can be grouped into two alpha-like (PFD3 and -5) and four beta-like (PFD1, -2, -4, and -6) subunits based on amino acid sequence similarity with their archaeal counterparts. Eukaryotic PFD has a six-legged structure similar to that seen in the archaeal homologue [, ]. This family contains the archaeal alpha subunit, eukaryotic prefoldin subunits 3 and 5 and the UXT (ubiquitously expressed transcript) family. Eukaryotic PFD has been shown to bind both actin and tubulin co-translationally. The chaperone then delivers the target protein to CCT, interacting with the chaperonin through the tips of the coiled coils. No authentic target proteins of any archaeal PFD have been identified, to date.; GO: 0051082 unfolded protein binding, 0006457 protein folding, 0016272 prefoldin complex; PDB: 1FXK_C 2ZDI_C.

>PRK03947 prefoldin subunit alpha; Reviewed

Probab=97.14  E-value=0.0038  Score=39.71  Aligned_cols=47  Identities=9%  Similarity=0.249  Sum_probs=44.2

Q ss_pred             cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         11 EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        11 e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      .+||..+.++|.+.|++..+.++..++.+...+..+..++..+...|
T Consensus        85 g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~~~~~~~~~~~~l  131 (140)
T PRK03947         85 GYSAEKDLDEAIEILDKRKEELEKALEKLEEALQKLASRIAQLAQEL  131 (140)
T ss_pred             CEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            78999999999999999999999999999999999999999988765

>cd00584 Prefoldin_alpha Prefoldin alpha subunit; Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=97.13  E-value=0.0046  Score=38.69  Aligned_cols=58  Identities=12%  Similarity=0.204  Sum_probs=50.2

Q ss_pred             ccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717          4 VERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus         4 ~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      .|.+.|| .+||..+.++|.+.+++..+.+++.+++++..+..+..+++.+-..+=.++
T Consensus        70 ~v~v~iG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~~~~~~~~l~~~~  128 (129)
T cd00584          70 KVLVDLGTGYYVEKDLEEAIEFLDKKIEELTKQIEKLQKELAKLKDQINTLEAELQELQ  128 (129)
T ss_pred             EEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3455544 699999999999999999999999999999999999999999887765543

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=96.89  E-value=0.0081  Score=37.41  Aligned_cols=49  Identities=8%  Similarity=0.220  Sum_probs=45.4

Q ss_pred             ccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         10 GEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus        10 Ge~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      +..||..+.++|.+.|+...+.+++.++.++..+..+..++..+-..|=
T Consensus        76 ~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~~~i~~~l~  124 (126)
T TIGR00293        76 SGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRAQQLEQEAQ  124 (126)
T ss_pred             CCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4688999999999999999999999999999999999999999887764

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>KOG3478|consensus

Probab=96.85  E-value=0.0046  Score=39.31  Aligned_cols=55  Identities=9%  Similarity=0.168  Sum_probs=49.4

Q ss_pred             cccccc-cccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNG-AGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         3 ~~v~y~-iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +...|+ ||.+.|..+.++|...+.+..+=+.++|.++++.+.++..++..-|..+
T Consensus        51 d~~VYKliGpvLvkqel~EAr~nV~kRlefI~~Eikr~e~~i~d~q~e~~k~R~~v  106 (120)
T KOG3478|consen   51 DSNVYKLIGPVLVKQELEEARTNVGKRLEFISKEIKRLENQIRDSQEEFEKQREAV  106 (120)
T ss_pred             cchHHHHhcchhhHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444565 9999999999999999999999999999999999999999998887654

>COG1730 GIM5 Predicted prefoldin, molecular chaperone implicated in de novo protein folding [Posttranslational modification, protein turnover, chaperones]

Probab=94.31  E-value=0.36  Score=31.69  Aligned_cols=55  Identities=9%  Similarity=0.201  Sum_probs=47.6

Q ss_pred             ccccccccc-ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNGAGE-IFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         3 ~~v~y~iGe-~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +++...||. .++..+.++|.+.|.+..+++++.+.++...+..+..++..|-..+
T Consensus        76 ~kviV~iGsg~~ae~~~~eAie~l~k~~~~l~~~~~~l~~~l~~l~~~~~~l~~~~  131 (145)
T COG1730          76 DKVIVSIGSGYYAEKSADEAIEFLKKRIEELEKAIEKLQQALAELAQRIEQLEQEA  131 (145)
T ss_pred             ceEEEEcCCceeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            455666664 6789999999999999999999999999999999999998887655

>PRK01203 prefoldin subunit alpha; Provisional

Probab=94.14  E-value=0.35  Score=31.24  Aligned_cols=53  Identities=9%  Similarity=0.202  Sum_probs=47.2

Q ss_pred             Ccccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          2 SRVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLK   54 (72)
Q Consensus         2 ~~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK   54 (72)
                      +++|..-|| ..||..+.+++.+.|.+..++++.-+.+....++.+...+++|-
T Consensus        68 ~~kVlVdIGTGy~VEK~~e~kie~L~~~ie~Le~~i~~K~~~l~~i~~~~~~l~  121 (130)
T PRK01203         68 DKDLIVPIGSGVYIAEERERTIERLKENLEDLKDSIQKLNDQRKTLVDQYNTVY  121 (130)
T ss_pred             CCeEEEEcCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345666676 57999999999999999999999999999999999999999886

>PF08286 Spc24: Spc24 subunit of Ndc80; InterPro: IPR013252 Spc24 is a component of the evolutionarily conserved kinetochore-associated Ndc80 complex and is involved in chromosome segregation []

Probab=93.65  E-value=0.026  Score=35.27  Aligned_cols=50  Identities=22%  Similarity=0.432  Sum_probs=15.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH----------------HHHHHHhhhCCCccCCC
Q psy15717         18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD----------------LKTHLYAKFGNHIKLEA   69 (72)
Q Consensus        18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e----------------LK~~LYakFG~~InLe~   69 (72)
                      ..++..-||.....++.++++|.+++.++..+..+                ||..||...|  |-++.
T Consensus        11 laK~~~~LE~~l~~l~~el~~L~~~l~eLe~~~~~~~~~~~~~~~~~d~~vlklkLYrsLG--I~~e~   76 (118)
T PF08286_consen   11 LAKELSDLESELESLQSELEELKEELEELEEQEVEGEEVDEDTTEEIDSNVLKLKLYRSLG--IELEY   76 (118)
T ss_dssp             --------------------------------HT------CCCCCHHCCCHHHHHHHHHCC--EEEEC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhcccccccCcccchHHHHHHHHHhCc--EEEEe
Confidence            34455677788888888888888888888888877                9999999999  88876

; PDB: 2VE7_D 2FV4_B 2FTX_B.

>PF06632 XRCC4: DNA double-strand break repair and V(D)J recombination protein XRCC4; InterPro: IPR010585 This entry represents the DNA double-strand break repair and V(D)J recombination protein XRCC4, which is found in certain Metazoans, fungi and plants

Probab=93.01  E-value=0.65  Score=34.23  Aligned_cols=38  Identities=18%  Similarity=0.414  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717         24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus        24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      .|.+..+++..+++++..+++.+...-.++=..||+||
T Consensus       148 ~L~~enerL~~e~~~~~~qlE~~v~~K~~~E~~L~~KF  185 (342)
T PF06632_consen  148 HLQKENERLESEANKLLKQLEKFVNAKEEHEEDLYAKF  185 (342)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            56666788889999999999999999999999999999

XRCC4 binds to DNA, and to DNA ligase IV (LIG4) to form the LIG4-XRCC4 complex []. The LIG4-XRCC4 complex is responsible for the ligation step in the non-homologous end joining (NHEJ) pathway of DNA double-strand break repair. XRCC4 enhances the joining activity of LIG4. It is thought that XRCC4 and LIG4 are essential for alignment-based gap filling, as well as for final ligation of the breaks []. Binding of the LIG4-XRCC4 complex to DNA ends is dependent on the assembly of the DNA-dependent protein kinase complex DNA-PK to these DNA ends. ; GO: 0003677 DNA binding, 0006302 double-strand break repair, 0006310 DNA recombination, 0005634 nucleus; PDB: 3RWR_R 1IK9_B 3SR2_E 3Q4F_H 3II6_B 1FU1_A 3MUD_B.

>KOG4196|consensus

Probab=91.08  E-value=1.5  Score=28.62  Aligned_cols=41  Identities=12%  Similarity=0.290  Sum_probs=37.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      ...||+++..+..++++|..+.....-+..-+|..+|+=.+
T Consensus        76 k~eLE~~k~~L~qqv~~L~~e~s~~~~E~da~k~k~e~l~~  116 (135)
T KOG4196|consen   76 KHELEKEKAELQQQVEKLKEENSRLRRELDAYKSKYEALQN  116 (135)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45799999999999999999999999999999999987543

>KOG4098|consensus

Probab=90.14  E-value=1.4  Score=28.88  Aligned_cols=49  Identities=14%  Similarity=0.253  Sum_probs=45.8

Q ss_pred             ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          8 GAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTH   56 (72)
Q Consensus         8 ~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~   56 (72)
                      +||.+.|.-+.-++.--|+..++.++.-|..|.+.+....++++.-|+.
T Consensus        67 mIgGvLVErTVkeVlP~L~~nke~i~~~i~~l~~qL~~k~kElnkfk~~  115 (140)
T KOG4098|consen   67 MIGGVLVERTVKEVLPILQTNKENIEKVIKKLTDQLVQKGKELNKFKKD  115 (140)
T ss_pred             HhccchhhhhHHHHhHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Confidence            4999999999999999999999999999999999999999999888763

>COG4064 MtrG Tetrahydromethanopterin S-methyltransferase, subunit G [Coenzyme metabolism]

Probab=89.59  E-value=0.6  Score=27.47  Aligned_cols=33  Identities=18%  Similarity=0.424  Sum_probs=24.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhhhCCCcc
Q psy15717         34 SDIASIEQTMSSIKTVMSDLKTHLYAKFGNHIK   66 (72)
Q Consensus        34 ~ei~~L~~el~~i~~~m~eLK~~LYakFG~~In   66 (72)
                      .+.+++.+.+++|+.+..---..+|.+||.+|-
T Consensus        15 ~dfne~~kRLdeieekvef~~~Ev~Qr~GkkiG   47 (75)
T COG4064          15 DDFNEIHKRLDEIEEKVEFVNGEVYQRIGKKIG   47 (75)
T ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhc
Confidence            456666777777777777777788999998874

>PF07195 FliD_C: Flagellar hook-associated protein 2 C-terminus; InterPro: IPR010809 The flagellar hook-associated protein 2 (HAP2 or FliD) forms the distal end of the flagella, and plays a role in mucin specific adhesion of the bacteria []

Probab=89.43  E-value=1.2  Score=30.65  Aligned_cols=40  Identities=15%  Similarity=0.355  Sum_probs=35.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717         24 SLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN   63 (72)
Q Consensus        24 ~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~   63 (72)
                      .+......++.++..++.+++.++.+|......||++|..
T Consensus       190 ~i~~~~~~l~~~~~~~~~~i~~~~~rl~~~~~~l~~qf~~  229 (239)
T PF07195_consen  190 SITSRIDSLNSQIKSLDKQIEDLEERLESKEERLRKQFSA  229 (239)
T ss_pred             chhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556778899999999999999999999999999999963

This alignment covers the C-terminal region of the flagellar hook-associated protein 2.; GO: 0007155 cell adhesion, 0009288 bacterial-type flagellum

>PF08199 E2: Bacteriophage E2-like protein; InterPro: IPR013184 This is a family of short conserved proteins of 37 amino acids, described in Lactococcus phage c2 and in related phage

Probab=87.92  E-value=0.17  Score=25.72  Aligned_cols=14  Identities=50%  Similarity=0.930  Sum_probs=10.8

Q ss_pred             HHHHHHhhhCCCcc
Q psy15717         53 LKTHLYAKFGNHIK   66 (72)
Q Consensus        53 LK~~LYakFG~~In   66 (72)
                      |-..||.+||..|.
T Consensus         2 l~rlly~rfgk~ik   15 (37)
T PF08199_consen    2 LSRLLYSRFGKFIK   15 (37)
T ss_pred             hHHHHHHHHHHHHH
Confidence            34579999998773

The function of these proteins is unknown.

>PF04201 TPD52: Tumour protein D52 family; InterPro: IPR007327 The hD52 gene was originally identified through its elevated expression level in human breast carcinoma

Probab=87.83  E-value=3.2  Score=27.85  Aligned_cols=35  Identities=17%  Similarity=0.377  Sum_probs=26.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +.|-....+++.+|..|+.-+-..+....+||..|
T Consensus        32 eeLr~EL~KvEeEI~TLrqvL~aKer~~~eLKrkL   66 (162)
T PF04201_consen   32 EELRSELAKVEEEIQTLRQVLAAKERHCAELKRKL   66 (162)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHH
Confidence            45566667777777777777778888888999887

Cloning of D52 homologues from other species has indicated that D52 may play roles in calcium-mediated signal transduction and cell proliferation. Two human homologues of hD52, hD53 and hD54, have also been identified, demonstrating the existence of a novel gene/protein family []. These proteins have an N-terminal coiled-coil that allows members to form homo- and heterodimers with each other [].

>KOG3501|consensus

Probab=86.99  E-value=3.3  Score=26.18  Aligned_cols=44  Identities=16%  Similarity=0.275  Sum_probs=36.4

Q ss_pred             ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          8 GAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMS   51 (72)
Q Consensus         8 ~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~   51 (72)
                      .+|..|+.-|..-....+++.....++.|+.|+..-.=++...+
T Consensus        55 svgrmF~l~dk~a~~s~leak~k~see~IeaLqkkK~YlEk~v~   98 (114)
T KOG3501|consen   55 SVGRMFMLSDKAAVRSHLEAKMKSSEEKIEALQKKKTYLEKTVS   98 (114)
T ss_pred             HHHHHHHcCcHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHH
Confidence            38999999999999999999999999999998877655544443

>PF05529 Bap31: B-cell receptor-associated protein 31-like ; InterPro: IPR008417 Bap31 is a polytopic integral protein of the endoplasmic reticulum membrane and a substrate of caspase-8

Probab=86.44  E-value=2.6  Score=27.90  Aligned_cols=33  Identities=15%  Similarity=0.366  Sum_probs=27.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ..+..+..+++++++..+++..+.++..||++.
T Consensus       152 ~~~~~~~~~~ei~~lk~el~~~~~~~~~LkkQ~  184 (192)
T PF05529_consen  152 LKEENKKLSEEIEKLKKELEKKEKEIEALKKQS  184 (192)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            445556778899999999999999999999875

Bap31 is cleaved within its cytosolic domain, generating pro-apoptotic p20 Bap31 [].; GO: 0006886 intracellular protein transport, 0005783 endoplasmic reticulum, 0016021 integral to membrane

>PRK06798 fliD flagellar capping protein; Validated

Probab=86.36  E-value=1.6  Score=32.87  Aligned_cols=38  Identities=13%  Similarity=0.344  Sum_probs=32.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      |......++.+|..++.+++.++.+|......||.+|.
T Consensus       377 i~~r~~~l~~~i~~l~~~~~~~e~rl~~~e~~l~~qf~  414 (440)
T PRK06798        377 IGERSKSIDNRVSKLDLKITDIDTQNKQKQDNIVDKYQ  414 (440)
T ss_pred             eehhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45567788889999999999999999999999999985

>TIGR00293 prefoldin, archaeal alpha subunit/eukaryotic subunit 5

Probab=86.27  E-value=2  Score=26.54  Aligned_cols=53  Identities=19%  Similarity=0.363  Sum_probs=40.2

Q ss_pred             ccccccc-ceeecchhHHH-------------HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          5 ERNGAGE-IFVDLIKRNSE-------------KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         5 v~y~iGe-~Fv~l~~e~a~-------------e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +++.||+ +||.-....+.             .-+++.++-++..++.|+..++.+...+..|+...
T Consensus        50 ~lv~lg~~~~v~~~v~~~~~v~v~iG~g~~vE~~~~eA~~~l~~~~~~l~~~~~~l~~~l~~l~~~~  116 (126)
T TIGR00293        50 TLVPVGAGSFVKAKVKDTDKVLVSIGSGYYVEKDAEEAIEFLKKRIEELEKAIEKLQEALAELASRA  116 (126)
T ss_pred             EEEEcCCCeEEEEEeCCCCEEEEEcCCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4455544 45555444444             57889999999999999999999999999998754

This model finds a set of small proteins from the Archaea and from Aquifex aeolicus that may represent two orthologous groups. The proteins are predicted to be mostly coiled coil, and may hit large numbers of proteins that contain coiled coil regions.

>PF08946 Osmo_CC: Osmosensory transporter coiled coil; InterPro: IPR015041 The osmosensory transporter coiled coil is a C-terminal domain found in various bacterial osmoprotective transporters, such as ProP, Proline/betaine transporter, Proline permease 2 and the citrate proton symporters

Probab=85.74  E-value=2  Score=23.20  Aligned_cols=32  Identities=19%  Similarity=0.438  Sum_probs=12.9

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTV   49 (72)
Q Consensus        18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~   49 (72)
                      ..+|.+.|.+--..++..|+.+..++.+++.+
T Consensus         3 ~~EAkelLqe~~d~IEqkiedid~qIaeLe~K   34 (46)
T PF08946_consen    3 RAEAKELLQEHYDNIEQKIEDIDEQIAELEAK   34 (46)
T ss_dssp             ------------THHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHhHHHhHHHHHHHHHHHHHH
Confidence            35667777666666666666666666665555

It adopts an antiparallel coiled-coil structure, and is essential for osmosensory and osmoprotectant transporter function []. ; PDB: 1R48_B.

>PRK08032 fliD flagellar capping protein; Reviewed

Probab=84.09  E-value=3.2  Score=31.39  Aligned_cols=38  Identities=5%  Similarity=0.256  Sum_probs=33.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      |......+...|..++.+++.+..+|..+...||.+|.
T Consensus       404 l~~~~~~l~~~i~~l~~~i~~~~~rl~~~e~rl~~qF~  441 (462)
T PRK08032        404 IKTATDGVNKTLKKLTKQYNAVSDSIDATIARYKAQFT  441 (462)
T ss_pred             chhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            44466788999999999999999999999999999995

>PRK09343 prefoldin subunit beta; Provisional

Probab=83.53  E-value=5.6  Score=24.90  Aligned_cols=45  Identities=9%  Similarity=0.307  Sum_probs=36.1

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         18 KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        18 ~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      .+.-.+.|+...+.+++..+.++..+.+++..+.++-..+|.+=|
T Consensus        76 l~~r~E~ie~~ik~lekq~~~l~~~l~e~q~~l~~ll~~~~~~~~  120 (121)
T PRK09343         76 LKERKELLELRSRTLEKQEKKLREKLKELQAKINEMLSKYYPQGG  120 (121)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            445567788888888888888888888888888888888877655

>PRK07737 fliD flagellar capping protein; Validated

Probab=83.13  E-value=2.8  Score=32.07  Aligned_cols=35  Identities=20%  Similarity=0.444  Sum_probs=29.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         28 SRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      ....+..+|..+..+++..+.+|..+...||++|.
T Consensus       442 ~~~~l~~~i~~l~~~i~~~~~rl~~~e~ry~~qf~  476 (501)
T PRK07737        442 QQFAIGKDLNQIETQIDRFQDRLKQIEDRYYKKFS  476 (501)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567888889999999999999999999999995

>KOG4010|consensus

Probab=83.02  E-value=5.6  Score=27.54  Aligned_cols=35  Identities=17%  Similarity=0.378  Sum_probs=22.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +.|-....++++||..|+.-+...+....+||..|
T Consensus        47 eelr~EL~kvEeEI~TLrqVLaAKerH~~ELKRKL   81 (208)
T KOG4010|consen   47 EELRTELAKVEEEIVTLRQVLAAKERHAAELKRKL   81 (208)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            35555556666666666666666666677787765

>smart00338 BRLZ basic region leucin zipper

Probab=83.00  E-value=5.9  Score=21.81  Aligned_cols=36  Identities=14%  Similarity=0.371  Sum_probs=27.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ...|+.....+..+...|..++..+..+...||..|
T Consensus        28 ~~~Le~~~~~L~~en~~L~~~~~~l~~e~~~lk~~~   63 (65)
T smart00338       28 IEELERKVEQLEAENERLKKEIERLRRELEKLKSEL   63 (65)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            446777777888888888888888888888887765

>PF04977 DivIC: Septum formation initiator; InterPro: IPR007060 DivIC, from the spore-forming, Gram-positive bacterium Bacillus subtilis, is necessary for both vegetative and sporulation septum formation []

Probab=82.60  E-value=5.2  Score=22.30  Aligned_cols=33  Identities=12%  Similarity=0.260  Sum_probs=24.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDL   53 (72)
Q Consensus        21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eL   53 (72)
                      ....+......+++++++++.+.+.+..+...|
T Consensus        18 ~~~~~~~ei~~l~~~i~~l~~e~~~L~~ei~~l   50 (80)
T PF04977_consen   18 RYYQLNQEIAELQKEIEELKKENEELKEEIERL   50 (80)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344666677777888888888888777777777

These proteins are mainly composed of an N-terminal coiled-coil. DivIB, DivIC and FtsL inter-depend on each other for stabilisation and localisation. The latter two form a heterodimer. DivIC is always centre cell but the other two associate with it during septation [].; GO: 0007049 cell cycle

>cd00632 Prefoldin_beta Prefoldin beta; Prefoldin is a hexameric molecular chaperone complex, composed of two evolutionarily related subunits (alpha and beta), which are found in both eukaryotes and archaea

Probab=82.58  E-value=6.6  Score=23.69  Aligned_cols=33  Identities=3%  Similarity=0.197  Sum_probs=18.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDL   53 (72)
Q Consensus        21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eL   53 (72)
                      -.+.++...+++++.++.++.++.+++.++.+|
T Consensus        71 ~~e~le~~i~~l~~~~~~l~~~~~elk~~l~~~  103 (105)
T cd00632          71 RLETIELRIKRLERQEEDLQEKLKELQEKIQQA  103 (105)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555555555555666666655555555554

Prefoldin binds and stabilizes newly synthesized polypeptides allowing them to fold correctly. The hexameric structure consists of a double beta barrel assembly with six protruding coiled-coils. The alpha prefoldin subunits have two beta hairpin structures while the beta prefoldin subunits (this CD) have only one hairpin that is most similar to the second hairpin of the alpha subunit. The prefoldin hexamer consists of two alpha and four beta subunits and is assembled from the beta hairpins of all six subunits. The alpha subunits initially dimerize providing a structural nucleus for the assembly of the beta subunits. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the st

>PF02183 HALZ: Homeobox associated leucine zipper; InterPro: IPR003106 This region is a plant specific leucine zipper that is always found associated with a homeobox []

Probab=81.59  E-value=6.1  Score=20.94  Aligned_cols=35  Identities=20%  Similarity=0.381  Sum_probs=19.4

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA   59 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa   59 (72)
                      |-..-+.+..+-+.|..+...+..++..|+..|..
T Consensus        10 LK~~yd~Lk~~~~~L~~E~~~L~aev~~L~~kl~~   44 (45)
T PF02183_consen   10 LKASYDSLKAEYDSLKKENEKLRAEVQELKEKLQM   44 (45)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            44444455555555555555666666666655543

; GO: 0003677 DNA binding, 0006355 regulation of transcription, DNA-dependent, 0005634 nucleus

>PRK06664 fliD flagellar hook-associated protein FliD; Validated

Probab=81.44  E-value=3.7  Score=32.71  Aligned_cols=38  Identities=11%  Similarity=0.194  Sum_probs=33.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      +......++..|..+..+++....+|..+...||++|.
T Consensus       598 i~~r~~~l~~~i~~l~~~i~~~e~rl~~~e~rl~~QFt  635 (661)
T PRK06664        598 IYNKVKGLDERIADNNKKIEEYEKKLESKERKLKGKYL  635 (661)
T ss_pred             eehHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34566788899999999999999999999999999996

>PF06156 DUF972: Protein of unknown function (DUF972); InterPro: IPR010377 FUNCTION: Involved in initiation control of chromosome replication

Probab=80.75  E-value=5.7  Score=24.68  Aligned_cols=29  Identities=10%  Similarity=0.273  Sum_probs=12.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         25 LEESRQNIKSDIASIEQTMSSIKTVMSDL   53 (72)
Q Consensus        25 LE~~ke~l~~ei~~L~~el~~i~~~m~eL   53 (72)
                      +|+....+-++|..|...+..+..+=..|
T Consensus        13 le~~l~~l~~~~~~LK~~~~~l~EEN~~L   41 (107)
T PF06156_consen   13 LEQQLGQLLEELEELKKQLQELLEENARL   41 (107)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444444444444444433333

SUBUNIT: Interacts with both DnaA and DnaN, acting as a bridge between these two proteins. SIMILARITY: Belongs to the YabA family.

>PF07106 TBPIP: Tat binding protein 1(TBP-1)-interacting protein (TBPIP); InterPro: IPR010776 This family consists of several eukaryotic TBP-1 interacting protein (TBPIP) sequences

Probab=80.61  E-value=5  Score=26.07  Aligned_cols=49  Identities=8%  Similarity=0.191  Sum_probs=25.1

Q ss_pred             ccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          6 RNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKT   55 (72)
Q Consensus         6 ~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~   55 (72)
                      .+..-+.|=.++.++ ...++.....++.++..|..++..+..+++.|.+
T Consensus        59 Y~~~Q~~~~~~s~ee-l~~ld~ei~~L~~el~~l~~~~k~l~~eL~~L~~  107 (169)
T PF07106_consen   59 YFANQDELEVPSPEE-LAELDAEIKELREELAELKKEVKSLEAELASLSS  107 (169)
T ss_pred             EeeCccccCCCCchh-HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            333334443333333 3334444566666666666666666666665554

TBP-1 has been demonstrated to interact with the human immunodeficiency virus type 1 (HIV-1) viral protein Tat, then modulate the essential replication process of HIV. In addition, TBP-1 has been shown to be a component of the 26S proteasome, a basic multiprotein complex that degrades ubiquitinated proteins in an ATP-dependent fashion. Human TBPIP interacts with human TBP-1 then modulates the inhibitory action of human TBP-1 on HIV-Tat-mediated transactivation [].

>cd00890 Prefoldin Prefoldin is a hexameric molecular chaperone complex, found in both eukaryotes and archaea, that binds and stabilizes newly synthesized polypeptides allowing them to fold correctly

Probab=80.30  E-value=9.6  Score=23.09  Aligned_cols=48  Identities=25%  Similarity=0.434  Sum_probs=30.1

Q ss_pred             ccceeecc-hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         10 GEIFVDLI-KRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        10 Ge~Fv~l~-~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +.++|++- .-.+.--+++..+-++..++.++..++.+...+..+...+
T Consensus        69 ~~v~v~iG~~~~ve~~~~eA~~~l~~r~~~l~~~~~~l~~~~~~~~~~~  117 (129)
T cd00890          69 DKVLVDLGTGVYVEKSLEEAIEFLKKRLETLEKQIEKLEKQLEKLQDQI  117 (129)
T ss_pred             CEEEEEecCCEEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555555 3344445666666777777777777777777777666553

The complex contains two alpha and four beta subunits, the two subunits being evolutionarily related. In archaea, there is usually only one gene for each subunit while in eukaryotes there two or more paralogous genes encoding each subunit adding heterogeneity to the structure of the hexamer. The structure of the complex consists of a double beta barrel assembly with six protruding coiled-coils.

>PF05565 Sipho_Gp157: Siphovirus Gp157; InterPro: IPR008840 This family contains both viral and bacterial proteins which are related to the Gp157 protein of the Streptococcus thermophilus SFi bacteriophage

Probab=80.24  E-value=12  Score=24.49  Aligned_cols=40  Identities=28%  Similarity=0.363  Sum_probs=34.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717         21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAK   60 (72)
Q Consensus        21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYak   60 (72)
                      ....++.+.+.+++++.+|.+..+...++...||..|..-
T Consensus        48 ~Ik~~ea~~e~~k~E~krL~~rkk~~e~~~~~Lk~yL~~~   87 (162)
T PF05565_consen   48 VIKNLEADIEAIKAEIKRLQERKKSIENRIDRLKEYLLDA   87 (162)
T ss_pred             HHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456788888999999999999999999999999999764

It is thought that bacteria possessing the gene coding for this protein have an increased resistance to the bacteriophage [].

>TIGR02338 gimC_beta prefoldin, beta subunit, archaeal

Probab=80.04  E-value=5.6  Score=24.26  Aligned_cols=36  Identities=19%  Similarity=0.329  Sum_probs=18.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ..-.+.....++++++.++..++.+..++..|...+
T Consensus        62 ~~~~~e~~~~l~~r~e~ie~~i~~lek~~~~l~~~l   97 (110)
T TIGR02338        62 KTDKEEAIQELKEKKETLELRVKTLQRQEERLREQL   97 (110)
T ss_pred             eecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555555555555555555555555443

Chaperonins are cytosolic, ATP-dependent molecular chaperones, with a conserved toroidal architecture, that assist in the folding of nascent and/or denatured polypeptide chains. The group I chaperonin system consists of GroEL and GroES, and is found (usually) in bacteria and organelles of bacterial origin. The group II chaperonin system, called the thermosome in Archaea and TRiC or CCT in the Eukaryota, is structurally similar but only distantly related. Prefoldin, also called GimC, is a complex in Archaea and Eukaryota, that works with group II chaperonins. Members of this protein family are the archaeal clade of the beta class of prefoldin subunit. Closely related, but outside the scope of this family are the eukaryotic beta-class prefoldin subunits, Gim-1,3,4 and 6. The alpha class prefoldin subunits are more distantly related.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	72
1fxk_A	107	Prefoldin; archaeal protein, chaperone; 2.30A {Met	99.53
2zqm_A	117	Prefoldin beta subunit 1; chaperone; HET: CIT; 1.9	99.47
1fxk_C	133	Protein (prefoldin); archaeal protein, chaperone;	97.59
2zdi_C	151	Prefoldin subunit alpha; chaperone, cytoplasm; 3.0	97.54
3aei_A	99	Prefoldin beta subunit 2; double helix, coiled coi	95.49
1ik9_A	213	DNA repair protein XRCC4; DNA END joining, double-	93.9
2yy0_A	53	C-MYC-binding protein; conserved hypothetical prot	93.1
1t2k_D	61	Cyclic-AMP-dependent transcription factor ATF-2; p	92.08
2pnv_A	43	Small conductance calcium-activated potassium chan	89.06
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	88.28
2wt7_A	63	Proto-oncogene protein C-FOS; transcription, trans	88.13
3nmd_A	72	CGMP dependent protein kinase; leucine zipper, coi	87.98
2l5g_B	42	Putative uncharacterized protein NCOR2, G protein	87.86
1g6u_A	48	Domain swapped dimer; designed three helix bundle,	87.5
1ci6_A	63	Transcription factor ATF-4; BZIP; 2.60A {Homo sapi	86.22
1jnm_A	62	Proto-oncogene C-JUN; BZIP, protein-DNA complex, t	84.59
1gmj_A	84	ATPase inhibitor; coiled-coil structure, P depende	83.53
1l8d_A	112	DNA double-strand break repair RAD50 ATPase; zinc	81.29
3mq7_A	121	Bone marrow stromal antigen 2; HIV, antiviral prot	81.28
1zxa_A	67	CGMP-dependent protein kinase 1, alpha isozyme; pa	81.19
2wt7_B	90	Transcription factor MAFB; transcription, transcri	80.37
3viq_B	85	Mating-type switching protein SWI5; recombination	80.02

>1fxk_A Prefoldin; archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1 PDB: 1fxk_B

Probab=99.53  E-value=4.3e-14  Score=85.50  Aligned_cols=60  Identities=12%  Similarity=0.256  Sum_probs=58.4

Q ss_pred             cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhC
Q psy15717          3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFG   62 (72)
Q Consensus         3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG   62 (72)
                      .+|++.||.|||+.|.++|.+.|++.++.++.+|+.|+.+++.+..+|.+||..||++||
T Consensus        48 ~~vy~~iG~vfv~~~~~e~~~~L~~~~e~i~~~i~~le~~~~~~~~~l~~lk~~l~~~~~  107 (107)
T 1fxk_A           48 AEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNIQEAMK  107 (107)
T ss_dssp             CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTCC
T ss_pred             chHHHHHhHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhC
Confidence            468999999999999999999999999999999999999999999999999999999996

>2zqm_A Prefoldin beta subunit 1; chaperone; HET: CIT; 1.90A {Thermococcus SP} PDB: 2zdi_A

Probab=99.47  E-value=2.5e-13  Score=83.11  Aligned_cols=61  Identities=13%  Similarity=0.276  Sum_probs=59.3

Q ss_pred             cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhCC
Q psy15717          3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKFGN   63 (72)
Q Consensus         3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakFG~   63 (72)
                      .+|++.||.|||+.|.++|.+.|+..++.++.+|+.|+.+++.+..+|.+||..||++||.
T Consensus        53 ~~vy~~iG~vfv~~~~~ea~~~L~~~~e~ie~~i~~le~~~~~l~~~l~~lk~~l~~~~~~  113 (117)
T 2zqm_A           53 AVVYKTVGTLIVKTTKDKAVAELKEKIETLEVRLNALERQEKKLNEKLKELTAQIQSALRP  113 (117)
T ss_dssp             CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSC
T ss_pred             cHhHHHhhHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            4689999999999999999999999999999999999999999999999999999999986

>1fxk_C Protein (prefoldin); archaeal protein, chaperone; 2.30A {Methanothermobacter thermautotrophicusorganism_taxid} SCOP: a.2.5.1

Probab=97.59  E-value=0.00032  Score=43.34  Aligned_cols=56  Identities=11%  Similarity=0.218  Sum_probs=50.3

Q ss_pred             cccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus         3 ~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      ++|..-|| ..||..+.++|.+.|++..+.++..++.++..+..+..++..+-..|=
T Consensus        70 ~~V~v~lG~g~~vE~~~~eA~~~l~~r~~~l~~~~~~l~~~l~~l~~~i~~~~~~l~  126 (133)
T 1fxk_C           70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQAE  126 (133)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CEEEEEcCCCEEEEeeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45777899 599999999999999999999999999999999999999988877653

>2zdi_C Prefoldin subunit alpha; chaperone, cytoplasm; 3.00A {Pyrococcus horikoshii}

Probab=97.54  E-value=0.00029  Score=44.65  Aligned_cols=56  Identities=9%  Similarity=0.102  Sum_probs=49.4

Q ss_pred             cccccccc-cceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNGAG-EIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus         3 ~~v~y~iG-e~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      ++|..-|| .+||..+.++|.+.|++..+.++..++.++..+..+..++..+...|=
T Consensus        80 ~~V~v~lG~g~~vE~~~~eA~~~l~~ri~~l~~~l~~l~~~l~~l~~~i~~~~~~l~  136 (151)
T 2zdi_C           80 NNAIVSVGSGYAVERSIDEAISFLEKRLKEYDEAIKKTQGALAELEKRIGEVARKAQ  136 (151)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTHHHHHH
T ss_pred             CEEEEEeCCCeEEEecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            45666788 899999999999999999999999999999999999998888877653

>3aei_A Prefoldin beta subunit 2; double helix, coiled coil, chaperone; 1.70A {Thermococcus SP}

Probab=95.49  E-value=0.057  Score=31.88  Aligned_cols=50  Identities=22%  Similarity=0.378  Sum_probs=43.8

Q ss_pred             ccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          8 GAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         8 ~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      .+.|..|.++.++|-+.+|...-..+.+|++|...-++|-.+++.|.+-|
T Consensus        49 af~dllveitkdeaiehier~rl~ykreie~l~~~ekeime~ls~l~~pl   98 (99)
T 3aei_A           49 AFSDLLVEITKDEAIEHIERSRLVYKREIEKLKKREKEIMEELSKLRAPL   98 (99)
T ss_dssp             EETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHC----
T ss_pred             HHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCC
Confidence            48899999999999999999999999999999999999999999887644

>1ik9_A DNA repair protein XRCC4; DNA END joining, double-strand break repair, V(D)J recombination, protein-protein complex, coiled coil; HET: DNA; 2.30A {Homo sapiens} SCOP: b.59.1.1 h.1.11.1 PDB: 3ii6_A* 1fu1_A* 3rwr_A*

Probab=93.90  E-value=0.4  Score=32.10  Aligned_cols=39  Identities=18%  Similarity=0.397  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhh
Q psy15717         23 KSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYAKF   61 (72)
Q Consensus        23 e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYakF   61 (72)
                      ..|.+....++..++++.++++.+...-.++=..||+||
T Consensus       142 ~~L~~e~~~l~~~~~~l~~qlE~~v~~K~~~E~~L~~KF  180 (213)
T 1ik9_A          142 EHLQKENERLLRDWNDVQGRFEKAVSAKEALETDLYKRF  180 (213)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345555567888888888889999999999999999999

>2yy0_A C-MYC-binding protein; conserved hypothetical protein, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.40A {Homo sapiens}

Probab=93.10  E-value=0.34  Score=25.88  Aligned_cols=31  Identities=16%  Similarity=0.273  Sum_probs=23.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         27 ESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      .+.+.++.+++.|+.++..+..+..+|++.|
T Consensus        19 ~d~eaLk~E~~eLk~k~~~L~~~~~el~~~l   49 (53)
T 2yy0_A           19 PEIELLRLELAEMKEKYEAIVEENKKLKAKL   49 (53)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4556777788888888888888888888765

>1t2k_D Cyclic-AMP-dependent transcription factor ATF-2; protein DNA complex, transcription/DNA complex; 3.00A {Homo sapiens} SCOP: h.1.3.1

Probab=92.08  E-value=0.62  Score=25.06  Aligned_cols=38  Identities=18%  Similarity=0.285  Sum_probs=32.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus        21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      -...|+...+.+..+...|.+++..+..+...||..|-
T Consensus        23 ~~~~Le~~~~~L~~~n~~L~~~i~~L~~e~~~Lk~~ll   60 (61)
T 1t2k_D           23 WVQSLEKKAEDLSSLNGQLQSEVTLLRNEVAQLKQLLL   60 (61)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            35678888888999999999999999999999998774

>2pnv_A Small conductance calcium-activated potassium channel protein 2; leucine zipper, SKCA channel, membrane protein; 2.10A {Rattus norvegicus}

Probab=89.06  E-value=0.96  Score=23.27  Aligned_cols=33  Identities=12%  Similarity=0.304  Sum_probs=24.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSD   52 (72)
Q Consensus        20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~e   52 (72)
                      +...-+...++.++++|..|+.+++.+...+..
T Consensus         9 dlvsel~~r~e~LE~Ri~~LE~KLd~L~~~l~a   41 (43)
T 2pnv_A            9 DMISDLNERSEDFEKRIVTLETKLETLIGSIHA   41 (43)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHc
Confidence            344556677778888888888888888776653

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=88.28  E-value=2.5  Score=24.64  Aligned_cols=27  Identities=15%  Similarity=0.270  Sum_probs=14.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         29 RQNIKSDIASIEQTMSSIKTVMSDLKT   55 (72)
Q Consensus        29 ke~l~~ei~~L~~el~~i~~~m~eLK~   55 (72)
                      ...-.++|+.|+..++.+...+.+||.
T Consensus        53 l~~h~~ei~~le~~i~rhk~~i~~l~~   79 (84)
T 1gmj_A           53 ISHHAKEIERLQKEIERHKQSIKKLKQ   79 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhhh
Confidence            344445555555555556666666554

>2wt7_A Proto-oncogene protein C-FOS; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 1fos_E* 1a02_F* 1s9k_D

Probab=88.13  E-value=2  Score=23.23  Aligned_cols=38  Identities=11%  Similarity=0.253  Sum_probs=31.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA   59 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa   59 (72)
                      ...|+...+.+..+-..|..++..+..+...||..|-+
T Consensus        25 ~~~Le~~v~~L~~~n~~L~~ei~~L~~e~~~Lk~~l~~   62 (63)
T 2wt7_A           25 TDTLQAETDQLEDEKSALQTEIANLLKEKEKLEFILAA   62 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45677888888888888888888888888888887753

>3nmd_A CGMP dependent protein kinase; leucine zipper, coiled-coil, structural genomics, berkeley S genomics center, BSGC, dimerization; HET: MSE; 2.27A {Homo sapiens}

Probab=87.98  E-value=2.4  Score=24.05  Aligned_cols=29  Identities=14%  Similarity=0.203  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         29 RQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        29 ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ....+..|..++.++.+....+.+|+.+|
T Consensus        35 Lr~kd~~I~eLEk~L~ekd~eI~~LqseL   63 (72)
T 3nmd_A           35 LRQRDALIDELELELDQKDELIQMLQNEL   63 (72)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556789999999999999999999987

>2l5g_B Putative uncharacterized protein NCOR2, G protein pathway suppressor 2; GPS2, SMRT, TBL1, CO-repressor, transcription regulator; NMR {Homo sapiens}

Probab=87.86  E-value=1.7  Score=22.27  Aligned_cols=29  Identities=21%  Similarity=0.406  Sum_probs=22.9

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         27 ESRQNIKSDIASIEQTMSSIKTVMSDLKT   55 (72)
Q Consensus        27 ~~ke~l~~ei~~L~~el~~i~~~m~eLK~   55 (72)
                      +...+++.+|++.++++.+++.++.+|..
T Consensus         9 qkI~kVdrEI~Kte~kI~~lqkKlkeLee   37 (42)
T 2l5g_B            9 QNMDRVDREITMVEQQISKLKKKQQQLEE   37 (42)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34558888888888888888888888754

>1g6u_A Domain swapped dimer; designed three helix bundle, de novo protein; 1.48A {Synthetic} SCOP: k.9.1.1

Probab=87.50  E-value=1.5  Score=22.54  Aligned_cols=27  Identities=22%  Similarity=0.466  Sum_probs=23.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHhh
Q psy15717         34 SDIASIEQTMSSIKTVMSDLKTHLYAK   60 (72)
Q Consensus        34 ~ei~~L~~el~~i~~~m~eLK~~LYak   60 (72)
                      .++..|++++..++.++..||+.|.|-
T Consensus        20 eelaaleselqalekklaalksklqal   46 (48)
T 1g6u_A           20 EELAALESELQALEKKLAALKSKLQAL   46 (48)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            478888999999999999999988763

>1ci6_A Transcription factor ATF-4; BZIP; 2.60A {Homo sapiens} SCOP: h.1.3.1

Probab=86.22  E-value=2.7  Score=22.78  Aligned_cols=36  Identities=11%  Similarity=0.247  Sum_probs=28.1

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      .+.|+...+.+..+...|..++..+..+..-||..|
T Consensus        25 ~~~le~~~~~L~~~N~~L~~~i~~L~~E~~~Lk~ll   60 (63)
T 1ci6_A           25 QEALTGECKELEKKNEALKERADSLAKEIQYLKDLI   60 (63)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346777777888888888888888888888888765

>1jnm_A Proto-oncogene C-JUN; BZIP, protein-DNA complex, transcription/DNA complex; 2.20A {Homo sapiens} SCOP: h.1.3.1 PDB: 1fos_F 2h7h_A 1t2k_C 1a02_J* 1s9k_E 1jun_A

Probab=84.59  E-value=1.9  Score=23.19  Aligned_cols=37  Identities=19%  Similarity=0.323  Sum_probs=24.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLY   58 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LY   58 (72)
                      ...|+...+.+..+-..|..++..+..+...||..|-
T Consensus        24 ~~~Le~~v~~L~~~n~~L~~~v~~L~~e~~~Lk~~l~   60 (62)
T 1jnm_A           24 IARLEEKVKTLKAQNSELASTANMLREQVAQLKQKVM   60 (62)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHTTC----
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4456667777777777777777777777777776653

>1gmj_A ATPase inhibitor; coiled-coil structure, P dependent oligomerization, ATP hydrolysis; 2.2A {Bos taurus} SCOP: h.4.8.1 PDB: 1ohh_H* 1hf9_A

Probab=83.53  E-value=4.8  Score=23.43  Aligned_cols=37  Identities=8%  Similarity=0.264  Sum_probs=31.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         21 SEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        21 a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ..+.|.+.++.+..+|+....+++.++..+...|..+
T Consensus        38 ekEqL~~LKkkl~~el~~h~~ei~~le~~i~rhk~~i   74 (84)
T 1gmj_A           38 AKEQLAALKKHKENEISHHAKEIERLQKEIERHKQSI   74 (84)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567788888888999999999999999998888765

>1l8d_A DNA double-strand break repair RAD50 ATPase; zinc finger, DNA repair, recombination, HOOK motif, replication; HET: DNA CIT; 2.20A {Pyrococcus furiosus} SCOP: h.4.12.1

Probab=81.29  E-value=6  Score=22.94  Aligned_cols=36  Identities=28%  Similarity=0.451  Sum_probs=27.8

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ...++...+.+..++..|.+....+..++..|+..|
T Consensus         5 ~~~~~~~~~~~~~~l~~L~~~~~~l~~~i~~l~~~l   40 (112)
T 1l8d_A            5 LEELETKKTTIEEERNEITQRIGELKNKIGDLKTAI   40 (112)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            345556667888888888888888888888888776

>3mq7_A Bone marrow stromal antigen 2; HIV, antiviral protein; 2.28A {Homo sapiens} PDB: 3mqc_A 3mqb_A 3mkx_A 3nwh_A 2xg7_A* 2x7a_A

Probab=81.28  E-value=4.8  Score=24.88  Aligned_cols=30  Identities=7%  Similarity=0.288  Sum_probs=21.2

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         28 SRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        28 ~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ..++++.+|..|..++.+...++.+|++.-
T Consensus        72 ~vqeLqgEI~~Lnq~Lq~a~ae~erlr~~~  101 (121)
T 3mq7_A           72 KVEELEGEITTLNHKLQDASAEVERLRREN  101 (121)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            345677777777777777777777777653

>1zxa_A CGMP-dependent protein kinase 1, alpha isozyme; parallel coiled coil dimer, transferase; NMR {Homo sapiens}

Probab=81.19  E-value=4  Score=22.78  Aligned_cols=38  Identities=18%  Similarity=0.257  Sum_probs=25.5

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         20 NSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        20 ~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ...+.+-+....-+..|..|+..+.....+..+|+.+|
T Consensus        11 ~~~e~~~~~i~~Kde~I~eLE~~L~~kd~eI~eLr~~L   48 (67)
T 1zxa_A           11 ELEEDFAKILMLKEERIKELEKRLSEKEEEIQELKRKL   48 (67)
T ss_dssp             ------CHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34455555666777888888888888888888888776

>2wt7_B Transcription factor MAFB; transcription, transcription regulation, nucleus, activator, repressor, DNA-binding, phosphoprotein, differentiation; 2.30A {Mus musculus} PDB: 2wty_A* 1k1v_A

Probab=80.37  E-value=6.7  Score=22.98  Aligned_cols=38  Identities=13%  Similarity=0.233  Sum_probs=33.7

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Q psy15717         22 EKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHLYA   59 (72)
Q Consensus        22 ~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~LYa   59 (72)
                      ...||..+..+..+++.|..+...+..++..+|..+-+
T Consensus        50 ~~~LE~e~~~L~~e~~~L~~e~~~~~~e~d~~k~k~~~   87 (90)
T 2wt7_B           50 KHHLENEKTQLIQQVEQLKQEVSRLARERDAYKVKSEK   87 (90)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            46789999999999999999999999999999987654

>3viq_B Mating-type switching protein SWI5; recombination activator; 2.20A {Schizosaccharomyces pombe} PDB: 3vir_A*

Probab=80.02  E-value=2.4  Score=24.74  Aligned_cols=28  Identities=18%  Similarity=0.349  Sum_probs=16.0

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         30 QNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus        30 e~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      ++++++|..|+++...+..+..+++..|
T Consensus         4 ~~L~~~i~~L~~q~~~L~~ei~~~~a~L   31 (85)
T 3viq_B            4 SQLESRVHLLEQQKEQLESSLQDALAKL   31 (85)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHHHHTC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            4555555556666555555555555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	72
d1fxka_	107	Prefoldin beta subunit {Archaeon Methanobacterium	98.19
d1fxkc_	133	Prefoldin alpha subunit {Archaeon Methanobacterium	97.39
d1ivsa1	66	Valyl-tRNA synthetase (ValRS) C-terminal domain {T	81.1

>d1fxka_ a.2.5.1 (A:) Prefoldin beta subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin beta subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=98.19  E-value=4.4e-06  Score=49.15  Aligned_cols=55  Identities=13%  Similarity=0.288  Sum_probs=51.2

Q ss_pred             cccccccccceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNGAGEIFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         3 ~~v~y~iGe~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      +++.-.||.+||..+.+++...|....+.++.+|+.|+..+..+..+|.+++..|
T Consensus        48 ~~vyk~vG~vLv~~~~~e~~~~l~~~~e~l~~~i~~l~~q~~~l~~~l~~~~~~l  102 (107)
T d1fxka_          48 AEVYKSSGNILIRVAKDELTEELQEKLETLQLREKTIERQEERVMKKLQEMQVNI  102 (107)
T ss_dssp             CCEEEEETTEEEEECHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             cHHHHHhcchhhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455569999999999999999999999999999999999999999999999876

>d1fxkc_ a.2.5.1 (C:) Prefoldin alpha subunit {Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: Prefoldin
family: Prefoldin
domain: Prefoldin alpha subunit
species: Archaeon Methanobacterium thermoautotrophicum [TaxId: 145262]

Probab=97.39  E-value=0.00038  Score=41.36  Aligned_cols=55  Identities=11%  Similarity=0.243  Sum_probs=48.8

Q ss_pred             ccccccccc-ceeecchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717          3 RVERNGAGE-IFVDLIKRNSEKSLEESRQNIKSDIASIEQTMSSIKTVMSDLKTHL   57 (72)
Q Consensus         3 ~~v~y~iGe-~Fv~l~~e~a~e~LE~~ke~l~~ei~~L~~el~~i~~~m~eLK~~L   57 (72)
                      .++.+-||. +||..+.++|.+.+++..+.++..++.+..++..+...+..+...+
T Consensus        70 ~~vlV~lG~g~~vE~~~~eA~~~l~~ri~~l~~~~~~l~~~~~~~~~~i~~l~~~~  125 (133)
T d1fxkc_          70 SEVIMSVGAGVAIKKNFEDAMESIKSQKNELESTLQKMGENLRAITDIMMKLSPQA  125 (133)
T ss_dssp             TEEEEEEETTEEEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             CceEEEecCCeeeeecHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            456666664 7899999999999999999999999999999999999999988765

>d1ivsa1 a.2.7.3 (A:797-862) Valyl-tRNA synthetase (ValRS) C-terminal domain {Thermus thermophilus [TaxId: 274]}

class: All alpha proteins
fold: Long alpha-hairpin
superfamily: tRNA-binding arm
family: Valyl-tRNA synthetase (ValRS) C-terminal domain
domain: Valyl-tRNA synthetase (ValRS) C-terminal domain
species: Thermus thermophilus [TaxId: 274]

Probab=81.10  E-value=1.4  Score=22.56  Aligned_cols=24  Identities=8%  Similarity=0.098  Sum_probs=10.3

Q ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Q psy15717         27 ESRQNIKSDIASIEQTMSSIKTVM   50 (72)
Q Consensus        27 ~~ke~l~~ei~~L~~el~~i~~~m   50 (72)
                      +..++++++++.++.++..+..+|
T Consensus         4 ~E~~RL~K~l~kl~~~i~~~~~kL   27 (66)
T d1ivsa1           4 EWRRRQEKRLKELLALAERSQRKL   27 (66)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334444444444444444444433