Psyllid ID: psy15734

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-------180-------190-------200-------210-------220-------230-------240-------250-------260-------270-------280-------290-------300-------310----
Protein Sequence
MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHCK
Secondary Structure (PSIPRED)
ccccccccEEEEEEEEEcccccccccccccEEEEccccEEEEEEEccccccEEEEEEccccEEEEEccEEEEccccEEEEEccccEEEEEEccccccccEEEEEEEEcccccEEEEEEEEEcccEEEEcccccEEEEEcccEEEEEEEEccccccEEEEEEccccEEcccccccccEEEEcccccccEEccEEEEEEEEEEcccccEEEEccccEEEEccccccEEEEEcccEEEEEEEEccccccccEEEEEEEcccccEEEEEEEEEEEcccccccccccEEEEEcEEEEEEEEcccccEEEEEEEEEEEEc
Secondary Structure Prediction (SSPRO)
ccccccccccccEEEEccccccccccccccEEEEcccEEEEEEEEccccccEEEEEEEcccEEEEEccEEEEcccEEEEEcccccEEEEEEEEcccccccEEEEEEEccccccEEEEEEEEEccccEEEcccccEEEEccccEEEEEEEccccccEEEEEEccccEEEccccccccEEEEcccEEEEEcccEEEEEEEEEcccccEEEEEEcccEEEEccccEEEEEEEccccEEEEEEEEEccHccccEEEEEEEcccccccEEEEEEEccccccccccEEEEccccEEEEEEcccccccEEEEEEEEEEEcc
Coil and Loop (DISEMBL)
magkfgggctyfktkcekpdmprfaepvanVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLrdvqetdrgwymcqintvpmtsqkgylqvvvpprilldrtstdvvvREGTEVTlecsavgypepyvawrredgkainyngelvppmltipnqlegafVSQTVELHchteafpaslnywtnekgdmiitgddyedsrlingyscHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIasngvvpsvsHRIMVTVHCK
Flexible Loop (DISEMBL)
magkfgggctyfktkcekpdmprFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTvpmtsqkgyLQVVVPPRilldrtstdvvvregtevtlecsavgypepyVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIAsngvvpsvSHRIMVTVHCK
Low Complexity Region (SEG)
MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHCK
Disordered region (IsUnstruct)
*****GGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH**
Disordered Region (DISOPRED)
**************KCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPR***********VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG******************SCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN**************LHMGAYLCIASNGVVPSVSHRIMVTVHCK
Disordered Region (DISEMBL)
MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHCK
Disordered Region (DISPRO)
***********FKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHCK
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHCK
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	314	2.2.26 [Sep-21-2011]
Q24372	359	Lachesin OS=Drosophila me	no	N/A	0.722	0.632	0.272	8e-25
Q26474	349	Lachesin OS=Schistocerca	N/A	N/A	0.754	0.679	0.247	2e-22
Q98892	337	Opioid-binding protein/ce	yes	N/A	0.722	0.673	0.290	6e-18
Q5IS61	345	Opioid-binding protein/ce	yes	N/A	0.748	0.681	0.279	1e-16
Q14982	345	Opioid-binding protein/ce	yes	N/A	0.748	0.681	0.279	1e-16
Q8BLK3	341	Limbic system-associated	yes	N/A	0.789	0.727	0.268	2e-16
Q13449	338	Limbic system-associated	no	N/A	0.729	0.677	0.279	2e-16
Q62813	338	Limbic system-associated	yes	N/A	0.729	0.677	0.279	2e-16
P11834	345	Opioid-binding protein/ce	no	N/A	0.748	0.681	0.283	5e-16
Q9W6V2	352	Neuronal growth regulator	no	N/A	0.710	0.633	0.274	9e-16

>sp|Q24372|LACH_DROME Lachesin OS=Drosophila melanogaster GN=Lac PE=2 SV=2

 Score =  114 bits (285), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 80/294 (27%), Positives = 129/294 (43%), Gaps = 67/294 (22%)

Query: 35  VGKEALMACVVENLREYKVAWVKMITQTI-LSIHHKVVTQNKRVSITFNDHRSWF-LHLR 92
           +G      C V+  +EY V ++K  +  + LS    +V ++ R S+ ++ + S + L ++
Sbjct: 42  IGGTVEFDCSVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIK 101

Query: 93  DVQETDRGWYMCQ--INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV 150
           D+QETD G Y CQ  I+TV   S +  L V  PP ++ D ++  VV  EG+EV +EC A 
Sbjct: 102 DIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPP-VISDNSTQSVVASEGSEVQMECYAS 160

Query: 151 GYPEPYVAWRRE-----------------------------------------DGKAINY 169
           GYP P + WRRE                                         D + IN 
Sbjct: 161 GYPTPTITWRRENNAILPTDSATYVGNTLRIKSVKKEDRGTYYCVADNGVSKGDRRNINV 220

Query: 170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDM----------IIT 219
             E   P++T+P    G  +   ++L CH EA+P     WT +   +            T
Sbjct: 221 EVEFA-PVITVPRPRLGQALQYDMDLECHIEAYPPPAIVWTKDDIQLANNQHYSISHFAT 279

Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
            D+Y DS          TL++ ++   Q+G Y C A N  GE +  + ++  ++
Sbjct: 280 ADEYTDS----------TLRVITVEKRQYGDYVCKATNRFGEAEARVNLFETII 323

Required for normal tracheal development and maintenance of the trans-epithelial diffusion barrier. Functions as a homophilic cell-adhesion molecule. May play a role in early neuronal differentiation and axon outgrowth.
Drosophila melanogaster (taxid: 7227)

>sp|Q26474|LACH_SCHAM Lachesin OS=Schistocerca americana GN=LAC PE=1 SV=1

 Score =  107 bits (266), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 71/287 (24%), Positives = 126/287 (43%), Gaps = 50/287 (17%)

Query: 35  VGKEALMACVVENLREYKVAWVKM-----ITQTILSIHHKVVTQNKRVSITFNDHRSWF- 88
           +G    + C V+  ++Y V W+K+     +    +S    ++ ++ R ++ ++   S + 
Sbjct: 35  IGGTVELECSVQYAQDYPVLWMKVDRNRQVDPLPISTGSSLIIRDSRFALRYDTASSTYT 94

Query: 89  LHLRDVQETDRGWYMCQ--INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLE 146
           L ++D+QETD G+Y CQ  I      + +  LQV  PP ++ D ++  +VV EG  V LE
Sbjct: 95  LQIKDIQETDAGFYQCQVIIGLNNKITAEVDLQVRRPP-VISDNSTRSLVVSEGQAVRLE 153

Query: 147 CSAVGYPEPYVAWRREDGKAINYNGEL--------------------------------- 173
           C A GYP P V+WRRE+   +   G +                                 
Sbjct: 154 CYAGGYPAPRVSWRRENNAILPTGGSIYRGNVLKISRIGKEDRGTYYCVAENGVGKGARR 213

Query: 174 -------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
                   PP++T+P    G  +   ++L CH EA+P     W  ++  ++     Y  S
Sbjct: 214 NIAVEVEFPPVITVPRPRLGQALQYDMDLECHVEAYPPPAITWLKDE-TVLSNNQHYSIS 272

Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
                     T ++ +I   Q+G Y+C A N LGE    ++++  ++
Sbjct: 273 HFATADEFTDTTRVITIEKRQYGKYQCKAANKLGEAREEVELFETII 319

May play a role in early neuronal differentiation and axon outgrowth.

Schistocerca americana (taxid: 7009)

>sp|Q98892|OBCAM_CHICK Opioid-binding protein/cell adhesion molecule homolog OS=Gallus gallus GN=OPCML PE=1 SV=2

 Score = 91.7 bits (226), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 85/293 (29%), Positives = 120/293 (40%), Gaps = 66/293 (22%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F + + NVT   G+ A + C V++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct: 31  FPKAMDNVTVRQGESATLRCTVDD-RVRRVAWLNR--STILYAGNDKWSIDNRVVILSNT 87

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + + + +V   D G Y C + T   P TS + +L V VPP+I+    S+D+ V EG+
Sbjct: 88  KTQYSIKIHNVDVYDEGPYTCSVQTDNHPKTS-RVHLIVQVPPQIV--NISSDITVNEGS 144

Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINY----------------NGEL------------ 173
            VTL C A G PEP V WR   GK   +                +GE             
Sbjct: 145 SVTLMCLAFGRPEPTVTWRHLSGKGQGFVSEDEYLEITGITREQSGEYECSAVNDVAVPD 204

Query: 174 ---------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE 224
                     PP ++      GA V Q   L C   A P +   W              E
Sbjct: 205 VRKVKVTVNYPPYISNAKN-TGASVGQKGILQCEASAVPVAEFQWFK------------E 251

Query: 225 DSRLINGYSC--------HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
           D+RL NG             TL   ++    +G+Y CVA N LG T+  I +Y
Sbjct: 252 DTRLANGLEGVRIESKGRLSTLTFFNVSEKDYGNYTCVATNKLGNTNASIILY 304

Inhibits neurite outgrowth.

Gallus gallus (taxid: 9031)

>sp|Q5IS61|OPCM_PANTR Opioid-binding protein/cell adhesion molecule OS=Pan troglodytes GN=OPCML PE=2 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 121/286 (42%), Gaps = 51/286 (17%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F + + NVT   G+ A + C +++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct: 38  FPKAMDNVTVRQGESATLRCTIDD-RVTRVAWLNR--STILYAGNDKWSIDPRVIILVNT 94

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + + +++V   D G Y C + T   P TS + +L V VPP+I+    S+D+ V EG+
Sbjct: 95  PTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTS-RVHLIVQVPPQIM--NISSDITVNEGS 151

Query: 142 EVTLECSAVGYPEPYVAWRR---EDGKAINYNGELV------------------------ 174
            VTL C A+G PEP V WR    ++G+      E +                        
Sbjct: 152 SVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAP 211

Query: 175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY 223
                      PP ++      G  V Q   L C   A P +   W  E+   + TG   
Sbjct: 212 DVRKVKITVNYPPYISKAKN-TGVSVGQKGILSCEASAVPMAEFQWFKEE-TRLATG--- 266

Query: 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
            D   I       TL   ++    +G+Y CVA N LG T+  I +Y
Sbjct: 267 LDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLY 312

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Pan troglodytes (taxid: 9598)

>sp|Q14982|OPCM_HUMAN Opioid-binding protein/cell adhesion molecule OS=Homo sapiens GN=OPCML PE=1 SV=1

 Score = 87.0 bits (214), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/286 (27%), Positives = 121/286 (42%), Gaps = 51/286 (17%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F + + NVT   G+ A + C +++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct: 38  FPKAMDNVTVRQGESATLRCTIDD-RVTRVAWLNR--STILYAGNDKWSIDPRVIILVNT 94

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + + +++V   D G Y C + T   P TS + +L V VPP+I+    S+D+ V EG+
Sbjct: 95  PTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTS-RVHLIVQVPPQIM--NISSDITVNEGS 151

Query: 142 EVTLECSAVGYPEPYVAWRR---EDGKAINYNGELV------------------------ 174
            VTL C A+G PEP V WR    ++G+      E +                        
Sbjct: 152 SVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAP 211

Query: 175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY 223
                      PP ++      G  V Q   L C   A P +   W  E+   + TG   
Sbjct: 212 DVRKVKITVNYPPYISKAKN-TGVSVGQKGILSCEASAVPMAEFQWFKEE-TRLATG--- 266

Query: 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
            D   I       TL   ++    +G+Y CVA N LG T+  I +Y
Sbjct: 267 LDGMRIENKGRMSTLTFFNVSEKDYGNYTCVATNKLGNTNASITLY 312

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Homo sapiens (taxid: 9606)

>sp|Q8BLK3|LSAMP_MOUSE Limbic system-associated membrane protein OS=Mus musculus GN=Lsamp PE=1 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 83/309 (26%), Positives = 124/309 (40%), Gaps = 61/309 (19%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F     N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +    
Sbjct: 34  FNRGTDNITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRH 90

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + L ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+
Sbjct: 91  ALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGS 147

Query: 142 EVTLECSAVGYPEPYVAW-----------------------RREDGK------------- 165
            VTL C A G PEP + W                       R + GK             
Sbjct: 148 NVTLVCMANGRPEPVITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSAD 207

Query: 166 ------AINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219
                  +NY     PP +T     E A   +   L C   A PA    W   + D  I 
Sbjct: 208 VKQVKVTVNY-----PPTITESKSNE-ATTGRQASLKCEASAVPAPDFEWY--RDDTRIN 259

Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQ 279
             +  + +   G S   +L + ++    +G+Y CVA N LG T+  + ++      +   
Sbjct: 260 SANGLEIKSTEGQS---SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLFSKYAKTEPDS 316

Query: 280 IRKMSRLHM 288
           ++ +  LH+
Sbjct: 317 MQVIEFLHI 325

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Mus musculus (taxid: 10090)

>sp|Q13449|LSAMP_HUMAN Limbic system-associated membrane protein OS=Homo sapiens GN=LSAMP PE=1 SV=2

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 117/290 (40%), Gaps = 61/290 (21%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F     N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +    
Sbjct: 34  FNRGTDNITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRH 90

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + L ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+
Sbjct: 91  SLEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGS 147

Query: 142 EVTLECSAVGYPEPYVAW-----------------------RREDGK------------- 165
            VTL C A G PEP + W                       R + GK             
Sbjct: 148 NVTLVCMANGRPEPVITWRHLTPTGREFEGEEEYLEILGITREQSGKYECKAANEVSSAD 207

Query: 166 ------AINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219
                  +NY     PP +T     E A   +   L C   A PA    W   + D  I 
Sbjct: 208 VKQVKVTVNY-----PPTITESKSNE-ATTGRQASLKCEASAVPAPDFEWY--RDDTRIN 259

Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
             +  + +   G S   +L + ++    +G+Y CVA N LG T+  + ++
Sbjct: 260 SANGLEIKSTEGQS---SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLF 306

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Homo sapiens (taxid: 9606)

>sp|Q62813|LSAMP_RAT Limbic system-associated membrane protein OS=Rattus norvegicus GN=Lsamp PE=1 SV=1

 Score = 86.7 bits (213), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/290 (27%), Positives = 117/290 (40%), Gaps = 61/290 (21%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F     N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +    
Sbjct: 34  FNRGTDNITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRH 90

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + L ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+
Sbjct: 91  ALEYSLRIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGS 147

Query: 142 EVTLECSAVGYPEPYVAW-----------------------RREDGK------------- 165
            VTL C A G PEP + W                       R + GK             
Sbjct: 148 NVTLVCMANGRPEPVITWRHLTPLGREFEGEEEYLEILGITREQSGKYECKAANEVSSAD 207

Query: 166 ------AINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219
                  +NY     PP +T     E A   +   L C   A PA    W   + D  I 
Sbjct: 208 VKQVKVTVNY-----PPTITESKSNE-ATTGRQASLKCEASAVPAPDFEWY--RDDTRIN 259

Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
             +  + +   G S   +L + ++    +G+Y CVA N LG T+  + ++
Sbjct: 260 SANGLEIKSTEGQS---SLTVTNVTEEHYGNYTCVAANKLGVTNASLVLF 306

Mediates selective neuronal growth and axon targeting. Contributes to the guidance of developing axons and remodeling of mature circuits in the limbic system. Essential for normal growth of the hyppocampal mossy fiber projection.

Rattus norvegicus (taxid: 10116)

>sp|P11834|OPCM_BOVIN Opioid-binding protein/cell adhesion molecule OS=Bos taurus GN=OPCML PE=1 SV=1

 Score = 85.1 bits (209), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 81/286 (28%), Positives = 120/286 (41%), Gaps = 51/286 (17%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F + + NVT   G+ A + C +++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct: 38  FPKAMDNVTVRQGESATLRCTIDD-RVTRVAWLNR--STILYAGNDKWSIDPRVIILVNT 94

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              + + +++V   D G Y C + T   P TS + +L V VPP+I+    S+DV V EG+
Sbjct: 95  PTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTS-RVHLIVQVPPQIM--NISSDVTVNEGS 151

Query: 142 EVTLECSAVGYPEPYVAWRR---EDGKAINYNGELV------------------------ 174
            VTL C A+G PEP V WR    ++G+      E +                        
Sbjct: 152 SVTLLCLAIGRPEPTVTWRHLSVKEGQGFVSEDEYLEISDIKRDQSGEYECSALNDVAAP 211

Query: 175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY 223
                      PP ++      G  V Q   L C   A P +   W  E    + TG   
Sbjct: 212 DVRKVKITVNYPPYISKAKN-TGVSVGQKGILSCEASAVPMAEFQWFKED-TRLATG--- 266

Query: 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
            D   I       TL   ++    +G+Y CVA N LG T+  I +Y
Sbjct: 267 LDGMRIENKGHISTLTFFNVSEKDYGNYTCVATNKLGITNASITLY 312

Binds opioids in the presence of acidic lipids; probably involved in cell contact.

Bos taurus (taxid: 9913)

>sp|Q9W6V2|NEGR1_CHICK Neuronal growth regulator 1 OS=Gallus gallus GN=NEGR1 PE=1 SV=1

 Score = 84.3 bits (207), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 74/270 (27%), Positives = 115/270 (42%), Gaps = 47/270 (17%)

Query: 36  GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ 95
           G  A++ C +E+    K AW+     +I+       + + RVSI   + R + L ++DV 
Sbjct: 51  GDTAVLRCYLED-GASKGAWLNR--SSIIFAGSDKWSVDPRVSIATANRREYSLQIQDVD 107

Query: 96  ETDRGWYMCQINT--VPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYP 153
            TD G Y C + T   P T Q  +L V V P+I   R S+D+VV EG+ VTL C A G P
Sbjct: 108 VTDDGPYTCSVQTQHTPRTMQV-HLTVQVSPKIF--RISSDIVVNEGSNVTLVCLATGKP 164

Query: 154 EPYVAWRR--------EDGKAINY----------------NGELVPPMLTIPNQLEGAFV 189
           EP ++WR         E G+ ++                 N   VP +  +   +  A  
Sbjct: 165 EPSISWRHISPSAKPFESGQYLDIYGITRDQAGEYECSAENDVSVPDVKKVKVTVNFAPT 224

Query: 190 SQTVE-----------LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
            Q ++           + C     PA +  W   +  +I      +    I  YS    L
Sbjct: 225 IQELKSSGVMLGGNGLIRCEGAGVPAPVFEWYRGERKLI----SGQQGITIKNYSTRSLL 280

Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKV 268
            + ++    FG+Y CVA N LG T+  + +
Sbjct: 281 TVTNVTEEHFGNYTCVAANKLGMTNASLPL 310

May be involved in cell-adhesion. May participate in the regulation of neurite outgrowth in the developing brain.

Gallus gallus (taxid: 9031)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
270001949	415	hypothetical protein TcasGA2_TC000861 [T	0.821	0.621	0.564	3e-95
195398506	670	GJ18366 [Drosophila virilis] gi|19414151	0.815	0.382	0.552	1e-94
195116875	691	GI10093 [Drosophila mojavensis] gi|19391	0.815	0.370	0.549	3e-94
195053297	391	GH13877 [Drosophila grimshawi] gi|193900	0.815	0.654	0.552	3e-94
357622411	428	hypothetical protein KGM_22731 [Danaus p	0.786	0.577	0.562	7e-94
198476232	684	GA16498 [Drosophila pseudoobscura pseudo	0.815	0.374	0.552	1e-93
189234391	438	PREDICTED: similar to GA16498-PA [Tribol	0.789	0.566	0.571	1e-93
194860475	672	GG10188 [Drosophila erecta] gi|190661459	0.815	0.380	0.552	2e-93
194765723	655	GF21699 [Drosophila ananassae] gi|190617	0.815	0.390	0.555	2e-93
195579032	675	GD22051 [Drosophila simulans] gi|1941913	0.815	0.379	0.552	2e-93

>gi|270001949|gb|EEZ98396.1| hypothetical protein TcasGA2_TC000861 [Tribolium castaneum]

 Score =  354 bits (908), Expect = 3e-95,   Method: Compositional matrix adjust.
 Identities = 170/301 (56%), Positives = 206/301 (68%), Gaps = 43/301 (14%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
            PRFAEP+ NVT TVG++AL+ACVV+NLR +KVAWV++ TQTILSIHH V+TQN R+S++
Sbjct: 41  FPRFAEPIPNVTVTVGRDALLACVVDNLRAFKVAWVRVDTQTILSIHHNVITQNPRISLS 100

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           +NDHRSWFLH+R+VQE+DRGWYMCQ+NT PM S++GYLQVVVPP I+   TS+D+VV E 
Sbjct: 101 YNDHRSWFLHIRNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIVDRETSSDMVVLES 160

Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELV-------------------------- 174
           T V+L C A GYPEPYV WRREDG+ I YNGE V                          
Sbjct: 161 TNVSLTCKATGYPEPYVMWRREDGEDIRYNGENVNVVDGEVLFITKVSRLHMAVYLCIAS 220

Query: 175 -----------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI 217
                            PPML+IPNQLEGA++ Q V L C TEAFP S+NYWT E+GDMI
Sbjct: 221 NGVPPSISKRVQLKVQFPPMLSIPNQLEGAYIGQDVTLECRTEAFPTSINYWTTERGDMI 280

Query: 218 ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI 277
           I+GD YE   + NGY  +M LKIR +    FGSY+CVA N+LGETDG IK+      GD 
Sbjct: 281 ISGDKYEAVSMDNGYKKYMMLKIRRVNKSDFGSYKCVAKNSLGETDGVIKLEGKTRAGDR 340

Query: 278 F 278
           F
Sbjct: 341 F 341

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195398506|ref|XP_002057862.1| GJ18366 [Drosophila virilis] gi|194141516|gb|EDW57935.1| GJ18366 [Drosophila virilis]

 Score =  352 bits (903), Expect = 1e-94,   Method: Compositional matrix adjust.
 Identities = 168/304 (55%), Positives = 213/304 (70%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E  DMPRFAEP+ANVT ++G++AL+ACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 55  QTALEDADMPRFAEPIANVTVSIGRDALLACVVENLKGYKVAWVRVDTQTILSIHHNVIS 114

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 115 QNNRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGMTS 174

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  V+L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 175 NDMVVREGQNVSLMCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 234

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA++ Q V L CHTEA+PAS+NYW
Sbjct: 235 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVMLECHTEAYPASINYW 294

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 295 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 354

Query: 265 FIKV 268
            IK+
Sbjct: 355 NIKL 358

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195116875|ref|XP_002002977.1| GI10093 [Drosophila mojavensis] gi|193913552|gb|EDW12419.1| GI10093 [Drosophila mojavensis]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 167/304 (54%), Positives = 213/304 (70%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  +  DMPRFAEP+ANVT ++G++AL+ACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 60  QTALDDADMPRFAEPIANVTVSIGRDALLACVVENLKGYKVAWVRVDTQTILSIHHNVIS 119

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 120 QNNRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGMTS 179

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  V+L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 180 NDMVVREGQNVSLMCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 239

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA++ Q V L CHTEA+PAS+NYW
Sbjct: 240 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVMLECHTEAYPASINYW 299

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 300 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 359

Query: 265 FIKV 268
            IK+
Sbjct: 360 NIKL 363

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195053297|ref|XP_001993563.1| GH13877 [Drosophila grimshawi] gi|193900622|gb|EDV99488.1| GH13877 [Drosophila grimshawi]

 Score =  351 bits (900), Expect = 3e-94,   Method: Compositional matrix adjust.
 Identities = 168/304 (55%), Positives = 213/304 (70%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E  DMPRFAEP+ANVT ++G++AL+ACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 17  QTALEDADMPRFAEPIANVTVSIGRDALLACVVENLKGYKVAWVRVDTQTILSIHHNVIS 76

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 77  QNNRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGMTS 136

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  V+L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 137 NDMVVREGQNVSLMCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 196

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA++ Q V L CHTEA+PAS+NYW
Sbjct: 197 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVMLECHTEAYPASINYW 256

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 257 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 316

Query: 265 FIKV 268
            IK+
Sbjct: 317 NIKL 320

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357622411|gb|EHJ73900.1| hypothetical protein KGM_22731 [Danaus plexippus]

 Score =  350 bits (897), Expect = 7e-94,   Method: Compositional matrix adjust.
 Identities = 166/295 (56%), Positives = 207/295 (70%), Gaps = 48/295 (16%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRFAEP+ NVT TVG++AL+ACVV+NLR +KVAWV+M TQTILSIHH ++TQNKR+S+++
Sbjct: 48  PRFAEPIPNVTVTVGRDALLACVVDNLRGFKVAWVRMDTQTILSIHHNIITQNKRISLSY 107

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
           NDHRSW+LH+++VQE DRGWYMCQ+NT PM S+KGYLQVVVPP I+ + TSTD+VVREGT
Sbjct: 108 NDHRSWYLHIKNVQEVDRGWYMCQVNTDPMRSRKGYLQVVVPPSIIDNMTSTDMVVREGT 167

Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINYNGELV--------------------------- 174
           +VTL C A GYPEPY  WRREDG+  NYNGE V                           
Sbjct: 168 DVTLVCRASGYPEPYAMWRREDGQDFNYNGESVSVVDGETLTISKVSRLHMGAYLCIASN 227

Query: 175 ----------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII 218
                           PPML+IPNQLEGA++ Q V L CHTEA+P+S+NYWT ++GDMII
Sbjct: 228 GVPPSISKRIMLMVQFPPMLSIPNQLEGAYIGQDVTLECHTEAYPSSINYWTTDRGDMII 287

Query: 219 T-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
           +     G  YE   + +GY+  M LKIR+I    FG Y+C+A N+LGETDG IK+
Sbjct: 288 SEMEIVGGKYEAFPVDSGYNKFMMLKIRNITKEDFGFYKCIAKNSLGETDGIIKL 342

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198476232|ref|XP_001357312.2| GA16498 [Drosophila pseudoobscura pseudoobscura] gi|198137601|gb|EAL34381.2| GA16498 [Drosophila pseudoobscura pseudoobscura]

 Score =  349 bits (895), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 168/304 (55%), Positives = 212/304 (69%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E  D PRFAEP+ANVT ++G++AL+ACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 71  QTAQEDADFPRFAEPIANVTVSIGRDALLACVVENLKGYKVAWVRVDTQTILSIHHNVIS 130

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 131 QNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGMTS 190

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  V+L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 191 NDMVVREGQNVSLMCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 250

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA+V Q V L CHTEA+PAS+NYW
Sbjct: 251 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYVGQDVILECHTEAYPASINYW 310

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 311 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 370

Query: 265 FIKV 268
            IK+
Sbjct: 371 NIKL 374

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189234391|ref|XP_974849.2| PREDICTED: similar to GA16498-PA [Tribolium castaneum]

 Score =  348 bits (894), Expect = 1e-93,   Method: Compositional matrix adjust.
 Identities = 167/292 (57%), Positives = 203/292 (69%), Gaps = 44/292 (15%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
            PRFAEP+ NVT TVG++AL+ACVV+NLR +KVAWV++ TQTILSIHH V+TQN R+S++
Sbjct: 41  FPRFAEPIPNVTVTVGRDALLACVVDNLRAFKVAWVRVDTQTILSIHHNVITQNPRISLS 100

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           +NDHRSWFLH+R+VQE+DRGWYMCQ+NT PM S++GYLQVVVPP I+   TS+D+VV E 
Sbjct: 101 YNDHRSWFLHIRNVQESDRGWYMCQVNTDPMRSRQGYLQVVVPPSIVDRETSSDMVVLES 160

Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELV-------------------------- 174
           T V+L C A GYPEPYV WRREDG+ I YNGE V                          
Sbjct: 161 TNVSLTCKATGYPEPYVMWRREDGEDIRYNGENVNVVDGEVLFITKVSRLHMAVYLCIAS 220

Query: 175 -----------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI 217
                            PPML+IPNQLEGA++ Q V L C TEAFP S+NYWT E+GDMI
Sbjct: 221 NGVPPSISKRVQLKVQFPPMLSIPNQLEGAYIGQDVTLECRTEAFPTSINYWTTERGDMI 280

Query: 218 ITGDD-YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
           I+G D YE   + NGY  +M LKIR +    FGSY+CVA N+LGETDG IK+
Sbjct: 281 ISGSDKYEAVSMDNGYKKYMMLKIRRVNKSDFGSYKCVAKNSLGETDGVIKL 332

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194860475|ref|XP_001969592.1| GG10188 [Drosophila erecta] gi|190661459|gb|EDV58651.1| GG10188 [Drosophila erecta]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/304 (55%), Positives = 213/304 (70%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E+ D PRFAEP+ANVT +VG++ALMACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 65  QTAQEESDFPRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVIS 124

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 125 QNNRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGLTS 184

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  ++L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 185 NDMVVREGQNISLVCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 244

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA++ Q V L CHTEA+PAS+NYW
Sbjct: 245 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPASINYW 304

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 305 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 364

Query: 265 FIKV 268
            IK+
Sbjct: 365 NIKL 368

Source: Drosophila erecta

Species: Drosophila erecta

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194765723|ref|XP_001964976.1| GF21699 [Drosophila ananassae] gi|190617586|gb|EDV33110.1| GF21699 [Drosophila ananassae]

 Score =  348 bits (893), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 169/304 (55%), Positives = 213/304 (70%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E+ D PRFAEP+ANVT +VG++AL+ACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 61  QTAQEESDFPRFAEPIANVTVSVGRDALLACVVENLKGYKVAWVRVDTQTILSIHHNVIS 120

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 121 QNNRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGMTS 180

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  V+L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 181 NDMVVREGQNVSLMCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 240

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA+V Q V L CHTEA+PAS+NYW
Sbjct: 241 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYVGQDVILECHTEAYPASINYW 300

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 301 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 360

Query: 265 FIKV 268
            IK+
Sbjct: 361 NIKL 364

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195579032|ref|XP_002079366.1| GD22051 [Drosophila simulans] gi|194191375|gb|EDX04951.1| GD22051 [Drosophila simulans]

 Score =  348 bits (892), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 168/304 (55%), Positives = 212/304 (69%), Gaps = 48/304 (15%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           +T  E  D PRFAEP+ANVT +VG++ALMACVVENL+ YKVAWV++ TQTILSIHH V++
Sbjct: 65  QTAQEDSDFPRFAEPIANVTVSVGRDALMACVVENLKGYKVAWVRVDTQTILSIHHNVIS 124

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTS 132
           QN R+S+T+NDHRSW+LH+++V+ETDRGWYMCQ+NT PM S+KGYLQVVVPP I+   TS
Sbjct: 125 QNSRISLTYNDHRSWYLHIKEVEETDRGWYMCQVNTDPMRSRKGYLQVVVPPMIVEGLTS 184

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------ 174
            D+VVREG  ++L C A GYPEPYV WRREDG+ +   GE V                  
Sbjct: 185 NDMVVREGQNISLVCKARGYPEPYVMWRREDGEEMLIGGEHVNVVDGELLHITKVSRLHM 244

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    PPML+IPNQLEGA++ Q V L CHTEA+PAS+NYW
Sbjct: 245 AAYLCVASNGVPPSISKRVHLRVQFPPMLSIPNQLEGAYLGQDVILECHTEAYPASINYW 304

Query: 210 TNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           T E+GDMII+     GD YE +  ++GY+ +M LKIR++  + FG+YRCVA N+LGETDG
Sbjct: 305 TTERGDMIISDTSRAGDKYETTSTVSGYTKYMKLKIRAVGPNDFGTYRCVAKNSLGETDG 364

Query: 265 FIKV 268
            IK+
Sbjct: 365 NIKL 368

Source: Drosophila simulans

Species: Drosophila simulans

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	314
FB|FBgn0259714	467	CG42368 [Drosophila melanogast	0.535	0.359	0.462	2.9e-56
FB|FBgn0031837	376	CG11320 [Drosophila melanogast	0.464	0.388	0.568	2.9e-54
FB|FBgn0259245	555	CG42343 [Drosophila melanogast	0.464	0.263	0.439	9.8e-52
FB|FBgn0010238	359	Lac "Lachesin" [Drosophila mel	0.407	0.356	0.368	1.7e-26
UNIPROTKB|Q13449	338	LSAMP "Limbic system-associate	0.436	0.405	0.365	3.2e-20
MGI|MGI:1261760	341	Lsamp "limbic system-associate	0.436	0.401	0.365	5.7e-20
RGD|71102	338	Lsamp "limbic system-associate	0.436	0.405	0.365	6.6e-20
UNIPROTKB|Q14982	345	OPCML "Opioid-binding protein/	0.417	0.379	0.359	7.5e-20
UNIPROTKB|P11834	345	OPCML "Opioid-binding protein/	0.417	0.379	0.366	1.1e-19
UNIPROTKB|Q98919	338	Q98919 "Limbic system-associat	0.455	0.423	0.344	1.1e-18

FB|FBgn0259714 CG42368 [Drosophila melanogaster (taxid:7227)]

 Score = 407 (148.3 bits), Expect = 2.9e-56, Sum P(2) = 2.9e-56
 Identities = 81/175 (46%), Positives = 110/175 (62%)

Query:     2 AGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQ 61
             AG  GG  T      E P+   F + + N+T   G+   +AC V+NL  YKVAW+     
Sbjct:    36 AGNVGGS-TLNNVISEDPE---FTDVIENITVPAGRNVKLACSVKNLGSYKVAWMHFEQS 91

Query:    62 TILSIHHKVVTQNKRVSITFNDH---RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYL 118
              IL++H+ V+T+N R+S+T + H   R+WFLH+ +VQE DRG YMCQINTV   +Q G++
Sbjct:    92 AILTVHNHVITRNPRISVTHDKHDKHRTWFLHINNVQEEDRGRYMCQINTVTAKTQYGFV 151

Query:   119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL 173
             +VVVPP I    TS+D++VREG  VTL C A G PEP + W+R+DG  I  N  L
Sbjct:   152 KVVVPPNIDDALTSSDIIVREGDNVTLRCKAKGSPEPTIKWKRDDGNKIVINKTL 206

GO:0005575 "cellular_component" evidence=ND

GO:0008150 "biological_process" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0031837 CG11320 [Drosophila melanogaster (taxid:7227)]

 Score = 442 (160.7 bits), Expect = 2.9e-54, Sum P(2) = 2.9e-54
 Identities = 83/146 (56%), Positives = 106/146 (72%)

Query:    22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
             P+F+ P+ N T  VG++AL+ CVV +L  +KVAW+++ TQTILSI + V+T+N R+SI+ 
Sbjct:    31 PKFSGPINNSTVPVGRDALLTCVVHDLVSFKVAWLRVDTQTILSIQNHVITKNHRISISH 90

Query:    82 NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
              +HR W L +RDVQE+DRGWYMCQINT PM SQ GYL VVVPP I+  +TS DVV   G 
Sbjct:    91 TEHRIWQLKIRDVQESDRGWYMCQINTDPMKSQMGYLDVVVPPDIVDYQTSQDVVRSTGQ 150

Query:   142 EVTLECSAVGYPEPYVAWRREDGKAI 167
              VTL CSA G P P + WRRE+   I
Sbjct:   151 NVTLTCSATGVPMPTITWRREEATPI 176

GO:0007155 "cell adhesion" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISS

FB|FBgn0259245 CG42343 [Drosophila melanogaster (taxid:7227)]

 Score = 344 (126.2 bits), Expect = 9.8e-52, Sum P(2) = 9.8e-52
 Identities = 69/157 (43%), Positives = 95/157 (60%)

Query:    22 PRFAEPVANVTATVGKEALMACVVENLREY-----------KVAWVKMITQTILSIHHKV 70
             P F  P+ NVT   G++A   CVV NL  +           KVAW+K   + IL+IH  V
Sbjct:    98 PDFVIPLENVTIAQGRDATFTCVVNNLGGHRVSGDGSSAPAKVAWIKADAKAILAIHEHV 157

Query:    71 VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
             +T N R+S+  ND+ +W L++R V+  D G YMCQ+NT PM  Q   L+VV+PP I+ + 
Sbjct:   158 ITNNDRLSVQHNDYNTWTLNIRGVKMEDAGKYMCQVNTDPMKMQTATLEVVIPPDIINEE 217

Query:   131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
             TS D++V EG    L C A G+P+P + WRREDG+ I
Sbjct:   218 TSGDMMVPEGGSAKLVCRARGHPKPKITWRREDGREI 254

GO:0008150 "biological_process" evidence=ND

GO:0005575 "cellular_component" evidence=ND

GO:0003674 "molecular_function" evidence=ND

FB|FBgn0010238 Lac "Lachesin" [Drosophila melanogaster (taxid:7227)]

 Score = 216 (81.1 bits), Expect = 1.7e-26, Sum P(2) = 1.7e-26
 Identities = 49/133 (36%), Positives = 77/133 (57%)

Query:    35 VGKEALMACVVENLREYKVAWVKMITQTI-LSIHHKVVTQNKRVSITFNDHRSWF-LHLR 92
             +G      C V+  +EY V ++K  +  + LS    +V ++ R S+ ++ + S + L ++
Sbjct:    42 IGGTVEFDCSVQYAKEYNVLFLKTDSDPVFLSTGSTLVIKDSRFSLRYDPNSSTYKLQIK 101

Query:    93 DVQETDRGWYMCQ--INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV 150
             D+QETD G Y CQ  I+TV   S +  L V  PP ++ D ++  VV  EG+EV +EC A 
Sbjct:   102 DIQETDAGTYTCQVVISTVHKVSAEVKLSVRRPP-VISDNSTQSVVASEGSEVQMECYAS 160

Query:   151 GYPEPYVAWRRED 163
             GYP P + WRRE+
Sbjct:   161 GYPTPTITWRREN 173

GO:0007409 "axonogenesis" evidence=ISS

GO:0019898 "extrinsic to membrane" evidence=NAS

GO:0007424 "open tracheal system development" evidence=IEP;IMP

GO:0035151 "regulation of tube size, open tracheal system" evidence=IMP

GO:0035160 "maintenance of epithelial integrity, open tracheal system" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0005918 "septate junction" evidence=IDA

GO:0016331 "morphogenesis of embryonic epithelium" evidence=IMP

GO:0019991 "septate junction assembly" evidence=IMP

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0005886 "plasma membrane" evidence=IDA

UNIPROTKB|Q13449 LSAMP "Limbic system-associated membrane protein" [Homo sapiens (taxid:9606)]

 Score = 204 (76.9 bits), Expect = 3.2e-20, Sum P(2) = 3.2e-20
 Identities = 53/145 (36%), Positives = 72/145 (49%)

Query:    30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
             N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +       + L
Sbjct:    40 NITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRHSLEYSL 96

Query:    90 HLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
              ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+ VTL C
Sbjct:    97 RIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGSNVTLVC 153

Query:   148 SAVGYPEPYVAWRREDGKAINYNGE 172
              A G PEP + WR        + GE
Sbjct:   154 MANGRPEPVITWRHLTPTGREFEGE 178

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0007399 "nervous system development" evidence=TAS

GO:0005515 "protein binding" evidence=IPI

MGI|MGI:1261760 Lsamp "limbic system-associated membrane protein" [Mus musculus (taxid:10090)]

 Score = 202 (76.2 bits), Expect = 5.7e-20, Sum P(2) = 5.7e-20
 Identities = 53/145 (36%), Positives = 72/145 (49%)

Query:    30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
             N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +       + L
Sbjct:    40 NITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRHALEYSL 96

Query:    90 HLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
              ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+ VTL C
Sbjct:    97 RIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGSNVTLVC 153

Query:   148 SAVGYPEPYVAWRREDGKAINYNGE 172
              A G PEP + WR        + GE
Sbjct:   154 MANGRPEPVITWRHLTPLGREFEGE 178

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

RGD|71102 Lsamp "limbic system-associated membrane protein" [Rattus norvegicus (taxid:10116)]

 Score = 202 (76.2 bits), Expect = 6.6e-20, Sum P(2) = 6.6e-20
 Identities = 53/145 (36%), Positives = 72/145 (49%)

Query:    30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
             N+T   G  A++ CVVE+ +  KVAW+      I+   H   + + RV +       + L
Sbjct:    40 NITVRQGDTAILRCVVED-KNSKVAWLNR--SGIIFAGHDKWSLDPRVELEKRHALEYSL 96

Query:    90 HLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
              ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+DV V EG+ VTL C
Sbjct:    97 RIQKVDVYDEGSYTCSVQTQHEPKTSQV-YLIVQVPPKI--SNISSDVTVNEGSNVTLVC 153

Query:   148 SAVGYPEPYVAWRREDGKAINYNGE 172
              A G PEP + WR        + GE
Sbjct:   154 MANGRPEPVITWRHLTPLGREFEGE 178

GO:0005886 "plasma membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

UNIPROTKB|Q14982 OPCML "Opioid-binding protein/cell adhesion molecule" [Homo sapiens (taxid:9606)]

 Score = 195 (73.7 bits), Expect = 7.5e-20, Sum P(2) = 7.5e-20
 Identities = 50/139 (35%), Positives = 76/139 (54%)

Query:    24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
             F + + NVT   G+ A + C +++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct:    38 FPKAMDNVTVRQGESATLRCTIDD-RVTRVAWLNR--STILYAGNDKWSIDPRVIILVNT 94

Query:    84 HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
                + + +++V   D G Y C + T   P TS+  +L V VPP+I+    S+D+ V EG+
Sbjct:    95 PTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRV-HLIVQVPPQIM--NISSDITVNEGS 151

Query:   142 EVTLECSAVGYPEPYVAWR 160
              VTL C A+G PEP V WR
Sbjct:   152 SVTLLCLAIGRPEPTVTWR 170

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0004985 "opioid receptor activity" evidence=TAS

GO:0005886 "plasma membrane" evidence=TAS

GO:0005887 "integral to plasma membrane" evidence=TAS

GO:0008038 "neuron recognition" evidence=TAS

GO:0038003 "opioid receptor signaling pathway" evidence=TAS

UNIPROTKB|P11834 OPCML "Opioid-binding protein/cell adhesion molecule" [Bos taurus (taxid:9913)]

 Score = 196 (74.1 bits), Expect = 1.1e-19, Sum P(2) = 1.1e-19
 Identities = 51/139 (36%), Positives = 76/139 (54%)

Query:    24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
             F + + NVT   G+ A + C +++ R  +VAW+     TIL   +   + + RV I  N 
Sbjct:    38 FPKAMDNVTVRQGESATLRCTIDD-RVTRVAWLNR--STILYAGNDKWSIDPRVIILVNT 94

Query:    84 HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
                + + +++V   D G Y C + T   P TS+  +L V VPP+I+    S+DV V EG+
Sbjct:    95 PTQYSIMIQNVDVYDEGPYTCSVQTDNHPKTSRV-HLIVQVPPQIM--NISSDVTVNEGS 151

Query:   142 EVTLECSAVGYPEPYVAWR 160
              VTL C A+G PEP V WR
Sbjct:   152 SVTLLCLAIGRPEPTVTWR 170

GO:0005886 "plasma membrane" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0007155 "cell adhesion" evidence=IEA

UNIPROTKB|Q98919 Q98919 "Limbic system-associated membrane protein" [Gallus gallus (taxid:9031)]

 Score = 195 (73.7 bits), Expect = 1.1e-18, Sum P(2) = 1.1e-18
 Identities = 52/151 (34%), Positives = 71/151 (47%)

Query:    24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
             F     N+T   G  A++ C VE+ R  KVAW+      I+       + + RV +    
Sbjct:    34 FTRGTDNITVRQGDTAILRCFVED-RSSKVAWLNR--SGIIFAGEDKWSLDPRVELEKRS 90

Query:    84 HRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
                + L ++ V   D G Y C + T   P TSQ  YL V VPP+I     S+D+ V EG+
Sbjct:    91 PLEYSLRIQKVDVYDEGSYTCSVQTQHHPKTSQV-YLIVQVPPKI--SNISSDITVNEGS 147

Query:   142 EVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
              VTL C A G PEP + WR        + GE
Sbjct:   148 NVTLVCMANGRPEPVITWRHLTPTGKEFEGE 178

GO:0007155 "cell adhesion" evidence=IEA

GO:0031225 "anchored to membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	314
smart00410	85	smart00410, IG_like, Immunoglobulin like	1e-08
smart00409	85	smart00409, IG, Immunoglobulin	1e-08
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	1e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	3e-06
smart00409	85	smart00409, IG, Immunoglobulin	3e-06
smart00410	85	smart00410, IG_like, Immunoglobulin like	8e-06
smart00409	85	smart00409, IG, Immunoglobulin	8e-06
pfam13895	80	pfam13895, Ig_2, Immunoglobulin domain	3e-05
cd07701	95	cd07701, Ig1_Necl-3, First (N-terminal) immunoglob	4e-05
cd05724	86	cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like	6e-05
cd04968	88	cd04968, Ig3_Contactin_like, Third Ig domain of co	1e-04
PHA03376	221	PHA03376, PHA03376, BARF1; Provisional	5e-04
smart00408	63	smart00408, IGc2, Immunoglobulin C-2 Type	6e-04
pfam07679	90	pfam07679, I-set, Immunoglobulin I-set domain	8e-04
cd05730	95	cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig	8e-04
cd05882	95	cd05882, Ig1_Necl-1, First (N-terminal) immunoglob	0.001
cd05717	95	cd05717, Ig1_Necl-1-3_like, First (N-terminal) imm	0.002
cd07693	100	cd07693, Ig1_Robo, First immunoglobulin (Ig)-like	0.002
cd05745	74	cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig	0.003
cd05764	74	cd05764, Ig_2, Subgroup of the immunoglobulin (Ig)	0.004

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           ++V L C     P     W  + G ++     +     ++      TL I ++     G+
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFS----VSRSGSTSTLTISNVTPEDSGT 65

Query: 251 YRCVAVNALGETDGFIKVYV 270
           Y C A N+ G       + V
Sbjct: 66  YTCAATNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 51.0 bits (122), Expect = 1e-08
 Identities = 16/80 (20%), Positives = 29/80 (36%), Gaps = 4/80 (5%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           ++V L C     P     W  + G ++     +     ++      TL I ++     G+
Sbjct: 10  ESVTLSCEASGSPPPEVTWYKQGGKLLAESGRFS----VSRSGSTSTLTISNVTPEDSGT 65

Query: 251 YRCVAVNALGETDGFIKVYV 270
           Y C A N+ G       + V
Sbjct: 66  YTCAATNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 45.7 bits (109), Expect = 1e-06
 Identities = 27/138 (19%), Positives = 44/138 (31%), Gaps = 57/138 (41%)

Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQ 183
           P+    +   DV V+EG      C+  G P+P V+W + DG+ +                
Sbjct: 1   PKF--TQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK-DGQPLR--------------- 42

Query: 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI 243
                                     ++++  +   G  Y             TL I ++
Sbjct: 43  --------------------------SSDRFKVTYEGGTY-------------TLTISNV 63

Query: 244 LSHQFGSYRCVAVNALGE 261
                G Y CVA N+ GE
Sbjct: 64  QPDDEGKYTCVATNSAGE 81

Length = 90

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
              V V+EG  VTL C A G P P V W ++ GK +  +G
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG 40

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 17/40 (42%), Positives = 22/40 (55%)

Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
              V V+EG  VTL C A G P P V W ++ GK +  +G
Sbjct: 1   PPSVTVKEGESVTLSCEASGSPPPEVTWYKQGGKLLAESG 40

Length = 85

>gnl|CDD|214653 smart00410, IG_like, Immunoglobulin like

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
           +VT   G+   ++C        +V W K           K++ ++ R S++ +   S  L
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYK--------QGGKLLAESGRFSVSRSGSTS-TL 53

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            + +V   D G Y C   T    S      + V
Sbjct: 54  TISNVTPEDSGTYTCAA-TNSSGSASSGTTLTV 85

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG. Length = 85

>gnl|CDD|214652 smart00409, IG, Immunoglobulin

 Score = 43.3 bits (102), Expect = 8e-06
 Identities = 20/93 (21%), Positives = 35/93 (37%), Gaps = 10/93 (10%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
           +VT   G+   ++C        +V W K           K++ ++ R S++ +   S  L
Sbjct: 3   SVTVKEGESVTLSCEASGSPPPEVTWYK--------QGGKLLAESGRFSVSRSGSTS-TL 53

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            + +V   D G Y C   T    S      + V
Sbjct: 54  TISNVTPEDSGTYTCAA-TNSSGSASSGTTLTV 85

Length = 85

>gnl|CDD|206066 pfam13895, Ig_2, Immunoglobulin domain

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 17/42 (40%), Positives = 23/42 (54%), Gaps = 1/42 (2%)

Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
           T +  VV EG +VTL CSA G P P   W + DG  ++ +  
Sbjct: 5   TPSPTVVFEGEDVTLTCSAPGNPPPNYTWYK-DGVPLSSSQN 45

This domain contains immunoglobulin-like domains. Length = 80

>gnl|CDD|143325 cd07701, Ig1_Necl-3, First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

 Score = 41.6 bits (97), Expect = 4e-05
 Identities = 25/93 (26%), Positives = 39/93 (41%), Gaps = 1/93 (1%)

Query: 28  VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
             NVT   G  A + C V+      + W     QT+     K +  N R+ +        
Sbjct: 4   TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN-RIELVRASWHEL 62

Query: 88  FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQV 120
            + + DV  +D G Y C + T+P+ + K YL V
Sbjct: 63  SISISDVSLSDEGQYTCSLFTMPVKTSKAYLTV 95

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. Length = 95

>gnl|CDD|143201 cd05724, Ig2_Robo, Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

 Score = 40.8 bits (96), Expect = 6e-05
 Identities = 18/40 (45%), Positives = 24/40 (60%), Gaps = 2/40 (5%)

Query: 134 DVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGE 172
           D  V  G    LECS   G+PEP V+WR+ DG+ +N + E
Sbjct: 5   DTQVAVGEMAVLECSPPRGHPEPTVSWRK-DGQPLNLDNE 43

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 86

>gnl|CDD|143169 cd04968, Ig3_Contactin_like, Third Ig domain of contactin

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 21/56 (37%), Positives = 28/56 (50%), Gaps = 2/56 (3%)

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI-NYNGELVPPMLTIPN-QLEGA 187
           D    +G  VTLEC A+G P P + WR+ DG    +    +   +L IPN Q E  
Sbjct: 10  DTYALKGQNVTLECFALGNPVPQIKWRKVDGSMPSSAEISMSGAVLKIPNIQFEDE 65

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnatal, and a lack of contactin-5 (NB-2) results in an impairment of neuronal act ivity in the rat auditory system. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma. Length = 88

>gnl|CDD|177613 PHA03376, PHA03376, BARF1; Provisional

 Score = 40.5 bits (94), Expect = 5e-04
 Identities = 34/144 (23%), Positives = 61/144 (42%), Gaps = 11/144 (7%)

Query: 31  VTATVGKEALMACVVENLR---EYKVAWVKM---ITQTILS-IHHKVVTQNKRVSITFND 83
           VTA +G+   +      +    E +V+W K+     Q ++  +HH V+         F+ 
Sbjct: 21  VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 80

Query: 84  HRS---WFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           HRS   +FL +     +  G Y+C++        K     VV P + L   S      + 
Sbjct: 81  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKP-LTLSVHSERSQFPDF 139

Query: 141 TEVTLECSAVGYPEPYVAWRREDG 164
           + +T+ C+   +P P+V W   +G
Sbjct: 140 SVLTVTCTVNAFPHPHVQWLMPEG 163

Length = 221

>gnl|CDD|197706 smart00408, IGc2, Immunoglobulin C-2 Type

 Score = 37.4 bits (87), Expect = 6e-04
 Identities = 18/46 (39%), Positives = 23/46 (50%), Gaps = 3/46 (6%)

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP--PMLTIPN 182
           EG  VTL C A G P P + W + DGK +  +   V     LTI +
Sbjct: 1   EGQSVTLTCPAEGNPVPNITWLK-DGKPLPESNRFVASGSTLTIKS 45

Length = 63

>gnl|CDD|191810 pfam07679, I-set, Immunoglobulin I-set domain

 Score = 37.6 bits (88), Expect = 8e-04
 Identities = 19/84 (22%), Positives = 32/84 (38%), Gaps = 10/84 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+F +   +V    G+ A   C V    +  V+W K           + +  + R  +T+
Sbjct: 1   PKFTQKPKDVEVQEGESARFTCTVTGDPDPTVSWFK---------DGQPLRSSDRFKVTY 51

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ 105
                  L + +VQ  D G Y C 
Sbjct: 52  EGGTY-TLTISNVQPDDEGKYTCV 74

Length = 90

>gnl|CDD|143207 cd05730, Ig3_NCAM-1_like, Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

 Score = 38.0 bits (88), Expect = 8e-04
 Identities = 17/45 (37%), Positives = 24/45 (53%), Gaps = 1/45 (2%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           PP I   ++  +     G  VTL C A G+PEP + W + DG+ I
Sbjct: 1   PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTK-DGEPI 44

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans interactions), through binding to the Ig1 and Ig2 domains. The adhesive ability of NCAM is modulated by the addition of polysialic acid chains to the fifth Ig-like domain. Length = 95

>gnl|CDD|143290 cd05882, Ig1_Necl-1, First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

 Score = 37.3 bits (86), Expect = 0.001
 Identities = 24/96 (25%), Positives = 42/96 (43%), Gaps = 2/96 (2%)

Query: 26  EPV-ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
           +PV  + T  VG    + C V+      + W     QT L    K   ++ R+ +  +  
Sbjct: 1   QPVTQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQT-LYFGEKRALRDNRIQLVKSTP 59

Query: 85  RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQV 120
               + + +VQ +D G Y C I T+P+ + K  + V
Sbjct: 60  TELIISISNVQLSDEGEYTCSIFTMPVRTAKATVTV 95

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Length = 95

>gnl|CDD|143194 cd05717, Ig1_Necl-1-3_like, First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

 Score = 36.6 bits (85), Expect = 0.002
 Identities = 21/93 (22%), Positives = 41/93 (44%), Gaps = 1/93 (1%)

Query: 28  VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
             +VT   G  A + C V+N     + W     QT+     + +  N+   + F+ +   
Sbjct: 4   TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSANE-L 62

Query: 88  FLHLRDVQETDRGWYMCQINTVPMTSQKGYLQV 120
            + + +V  +D G Y C + T+P+ + K  + V
Sbjct: 63  SISISNVSLSDEGRYTCSLYTMPVQTAKATVTV 95

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the formation of synapses, axon bundles, and myelinated axons. Necl-2 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes. This group also contains Class-I MHC-restricted T-cell-associated molecule (CRTAM), whose expression pattern is consistent with its expression in Class-I MHC-restricted T-cells. Length = 95

>gnl|CDD|143317 cd07693, Ig1_Robo, First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

 Score = 36.8 bits (85), Expect = 0.002
 Identities = 15/39 (38%), Positives = 22/39 (56%), Gaps = 2/39 (5%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
           PPRI+     +D++V +G   TL C A G P P + W +
Sbjct: 1   PPRIV--EHPSDLIVSKGDPATLNCKAEGRPTPTIQWLK 37

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagonizes slit responsiveness in precrossing axons. The Slit-Robo interaction is mediated by the second leucine-rich repeat (LRR) domain of Slit and the two N-terminal Ig domains of Robo, Ig1 and Ig2. The primary Robo binding site for Slit2 has been shown by surface plasmon resonance experiments and mutational analysis to be is the Ig1 domain, while the Ig2 domain has been proposed to harbor a weak secondary binding site. Length = 100

>gnl|CDD|143222 cd05745, Ig3_Peroxidasin, Third immunoglobulin (Ig)-like domain of peroxidasin

 Score = 35.7 bits (82), Expect = 0.003
 Identities = 21/70 (30%), Positives = 31/70 (44%), Gaps = 8/70 (11%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           QTV+  C  + +P  +  WT     + +   D     L +G     TL+I  +  H  G 
Sbjct: 3   QTVDFLCEAQGYPQPVIAWTKGGSQLSV---DRRHLVLSSG-----TLRISRVALHDQGQ 54

Query: 251 YRCVAVNALG 260
           Y C AVN +G
Sbjct: 55  YECQAVNIVG 64

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self. Length = 74

>gnl|CDD|143241 cd05764, Ig_2, Subgroup of the immunoglobulin (Ig) superfamily

 Score = 35.2 bits (81), Expect = 0.004
 Identities = 14/28 (50%), Positives = 15/28 (53%)

Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAI 167
           G   TL C A G PEP + W   DGK I
Sbjct: 1   GQRATLRCKARGDPEPAIHWISPDGKLI 28

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond. Length = 74

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	314
KOG3513|consensus	1051		100.0
KOG3513|consensus	1051		100.0
KOG4194|consensus	873		99.95
KOG4221|consensus	1381		99.94
KOG4221|consensus	1381		99.92
KOG4222|consensus	1281		99.92
PHA02785	326	IL-beta-binding protein; Provisional	99.91
KOG4222|consensus	1281		99.91
PHA02826	227	IL-1 receptor-like protein; Provisional	99.86
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.81
KOG4194|consensus	873		99.77
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.76
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.74
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.74
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.72
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.7
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.7
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.7
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.7
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.7
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.7
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.69
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.69
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.68
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.68
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.68
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.68
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.68
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.67
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.67
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.66
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.66
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	99.66
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.66
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.66
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.65
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.65
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.64
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.63
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.63
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.62
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.62
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.62
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.62
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.61
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.61
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.61
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.61
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.61
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.61
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.6
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.6
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.59
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.59
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	99.59
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.59
PHA02785	326	IL-beta-binding protein; Provisional	99.58
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.58
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.58
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.58
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.58
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.57
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.57
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.57
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.57
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	99.56
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.56
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.56
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.56
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.56
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.56
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.55
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.55
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	99.55
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.54
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	99.54
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.54
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.54
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.54
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.54
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.53
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.53
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.53
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	99.53
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.52
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.52
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.52
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	99.51
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.51
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	99.51
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.49
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	99.48
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.48
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.48
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	99.47
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	99.47
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	99.47
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.47
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.46
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	99.46
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	99.46
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	99.46
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.46
cd05852	73	Ig5_Contactin-1 Fifth Ig domain of contactin-1. Ig	99.45
cd05892	75	Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like	99.45
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	99.45
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	99.45
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.45
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	99.45
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	99.44
cd05854	85	Ig6_Contactin-2 Sixth Ig domain of contactin-2. Ig	99.44
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	99.44
cd05745	74	Ig3_Peroxidasin Third immunoglobulin (Ig)-like dom	99.44
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.43
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	99.43
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	99.42
cd05893	75	Ig_Palladin_C C-terminal immunoglobulin (Ig)-like	99.42
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	99.42
cd05735	88	Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down	99.41
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.41
cd05853	85	Ig6_Contactin-4 Sixth Ig domain of contactin-4. Ig	99.41
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.41
PHA02826	227	IL-1 receptor-like protein; Provisional	99.4
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	99.39
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.39
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.39
cd05744	75	Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain	99.38
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	99.38
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	99.38
cd05726	90	Ig4_Robo Fhird immunoglobulin (Ig)-like domain in	99.37
cd04973	79	Ig1_FGFR First immunoglobulin (Ig)-like domain of	99.37
cd04969	73	Ig5_Contactin_like Fifth Ig domain of contactin. I	99.36
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	99.36
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	99.36
cd05867	76	Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like do	99.35
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	99.35
cd05723	71	Ig4_Neogenin Fourth immunoglobulin (Ig)-like domai	99.35
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	99.34
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.34
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	99.33
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	99.33
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	99.33
cd05748	74	Ig_Titin_like Immunoglobulin (Ig)-like domain of t	99.32
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	99.32
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	99.32
cd05743	78	Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domai	99.32
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.32
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	99.32
PHA03376	221	BARF1; Provisional	99.31
cd04974	90	Ig3_FGFR Third immunoglobulin (Ig)-like domain of	99.31
cd05868	76	Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain o	99.3
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	99.3
cd05858	90	Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain o	99.3
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	99.29
cd05863	67	Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain	99.28
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	99.28
cd05764	74	Ig_2 Subgroup of the immunoglobulin (Ig) superfami	99.27
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.27
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.27
KOG3515|consensus	741		99.26
cd05756	94	Ig1_IL1R_like First immunoglobulin (Ig)-like domai	99.26
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	99.26
cd05763	75	Ig_1 Subgroup of the immunoglobulin (Ig) superfami	99.26
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	99.26
cd04978	76	Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like	99.25
cd05725	69	Ig3_Robo Third immunoglobulin (Ig)-like domain in	99.25
cd04976	71	Ig2_VEGFR Second immunoglobulin (Ig)-like domain o	99.24
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	99.24
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.23
cd05746	69	Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like do	99.23
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	99.23
cd05876	71	Ig3_L1-CAM Third immunoglobulin (Ig)-like domain o	99.22
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.21
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	99.21
cd05738	74	Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-l	99.21
cd05864	70	Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain	99.2
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.2
cd05765	81	Ig_3 Subgroup of the immunoglobulin (Ig) superfami	99.19
cd05742	84	Ig1_VEGFR_like First immunoglobulin (Ig)-like doma	99.18
cd05739	69	Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-li	99.18
smart00409	86	IG Immunoglobulin.	99.18
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	99.18
smart00408	63	IGc2 Immunoglobulin C-2 Type.	99.18
cd05760	77	Ig2_PTK7 Second immunoglobulin (Ig)-like domain of	99.17
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	99.16
cd05861	84	Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like	99.16
cd05855	79	Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of T	99.16
cd05873	87	Ig_Sema4D_like Immunoglobulin (Ig)-like domain of	99.15
KOG3515|consensus	741		99.15
cd05734	79	Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain	99.14
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	99.14
cd04971	81	Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of	99.14
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	99.13
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	99.13
cd05731	71	Ig3_L1-CAM_like Third immunoglobulin (Ig)-like dom	99.12
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	99.11
cd05736	76	Ig2_Follistatin_like Second immunoglobulin (Ig)-li	99.11
cd07702	72	Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain	99.09
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	99.07
cd05727	96	Ig2_Contactin-2-like Second Ig domain of the neura	99.07
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	99.07
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	99.06
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	99.06
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	99.06
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	99.05
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	99.05
cd05750	75	Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain	99.04
PF00047	64	ig: Immunoglobulin domain The Prosite family only	99.02
cd05753	83	Ig2_FcgammaR_like Second immunoglobulin (Ig)-like	99.02
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	99.02
cd05875	77	Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-li	99.02
cd05733	77	Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like dom	99.01
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.99
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	98.99
PF00047	64	ig: Immunoglobulin domain The Prosite family only	98.98
cd05874	77	Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of	98.97
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.97
cd05895	76	Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domai	98.97
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.95
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.94
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	98.94
smart00409	86	IG Immunoglobulin.	98.94
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	98.93
cd05757	92	Ig2_IL1R_like Second immunoglobulin (Ig)-like doma	98.93
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	98.93
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.92
cd05713	100	Ig_MOG_like Immunoglobulin (Ig)-like domain of mye	98.92
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.92
cd05896	104	Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like	98.92
cd05774	105	Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain	98.91
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.91
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.91
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.9
cd05862	86	Ig1_VEGFR First immunoglobulin (Ig)-like domain of	98.9
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.9
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.89
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	98.89
cd05714	106	Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of cho	98.89
cd05877	106	Ig_LP_like Immunoglobulin (Ig)-like domain of huma	98.88
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.88
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.87
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.87
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.86
cd05900	112	Ig_Aggrecan Immunoglobulin (Ig)-like domain of the	98.86
cd05879	116	Ig_P0 Immunoglobulin (Ig)-like domain of Protein z	98.86
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.85
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.84
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.84
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.84
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.83
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	98.83
cd05878	110	Ig_Aggrecan_like Immunoglobulin (Ig)-like domain o	98.82
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.82
smart00408	63	IGc2 Immunoglobulin C-2 Type.	98.82
cd05718	98	Ig1_PVR_like First immunoglobulin (Ig) domain of p	98.8
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.79
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	98.79
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.78
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.78
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.77
cd05775	97	Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)	98.77
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.76
cd05880	115	Ig_EVA1 Immunoglobulin (Ig)-like domain of epithel	98.75
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.75
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.74
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.74
cd05741	92	Ig_CEACAM_D1_like First immunoglobulin (Ig)-like d	98.74
cd05715	116	Ig_P0-like Immunoglobulin (Ig)-like domain of Prot	98.74
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.73
cd05872	85	Ig_Sema4B_like Immunoglobulin (Ig)-like domain of	98.73
cd05888	100	Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain	98.73
cd05751	91	Ig1_LILRB1_like First immunoglobulin (Ig)-like dom	98.72
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.7
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.7
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	98.68
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.67
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	98.67
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.67
PHA03376	221	BARF1; Provisional	98.66
cd05886	99	Ig1_Nectin-1_like First immunoglobulin (Ig) domain	98.66
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.66
cd00099	105	IgV Immunoglobulin variable domain (IgV). IgV: Imm	98.64
cd05901	117	Ig_Versican Immunoglobulin (Ig)-like domain of the	98.64
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.61
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	98.6
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	98.59
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	98.58
cd05902	110	Ig_Neurocan Immunoglobulin (Ig)-like domain of the	98.58
cd05885	80	Ig2_Necl-4 Second immunoglobulin (Ig)-like domain	98.57
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	98.57
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.56
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.55
cd05759	82	Ig2_KIRREL3-like Second immunoglobulin (Ig)-like d	98.55
cd04984	98	IgV_L_lambda Immunoglobulin (Ig) lambda light chai	98.52
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.52
smart00406	81	IGv Immunoglobulin V-Type.	98.51
cd07706	116	IgV_TCR_delta Immunoglobulin (Ig) variable (V) dom	98.51
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.51
cd05846	97	Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain	98.5
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.5
cd05716	98	Ig_pIgR Immunoglobulin (Ig)-like domain in the pol	98.5
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	98.49
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	98.49
cd05887	96	Ig1_Nectin-3_like First immunoglobulin (Ig) domain	98.48
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	98.48
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	98.46
cd05897	95	Ig2_IL1R2_like Second immunoglobulin (Ig)-like dom	98.45
cd07700	107	IgV_CD8_beta Immunoglobulin (Ig) like domain of CD	98.4
PHA02987	189	Ig domain OX-2-like protein; Provisional	98.38
PHA02914	500	Immunoglobulin-like domain protein; Provisional	98.36
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	98.35
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	98.34
smart00407	75	IGc1 Immunoglobulin C-Type.	98.33
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	98.27
cd05883	82	Ig2_Necl-2 Second immunoglobulin (Ig)-like domain	98.25
cd05712	119	Ig_Siglec_N Immunoglobulin (Ig) domain at the N te	98.22
cd05889	96	Ig1_DNAM-1_like First immunoglobulin (Ig) domain o	98.22
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	98.2
cd05720	104	Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD	98.19
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	98.16
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	98.15
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	98.15
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	98.14
cd07694	88	Ig2_CD4 Second immunoglobulin (Ig) domain of CD4.	98.13
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	98.12
cd04981	117	IgV_H Immunoglobulin (Ig) heavy chain (H), variabl	98.07
cd05770	93	IgC_beta2m Class I major histocompatibility comple	98.07
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	98.07
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	98.06
cd05761	82	Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like	98.04
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	98.03
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	98.03
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.99
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	97.99
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	97.96
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.93
cd07705	83	Ig2_Necl-1 Second immunoglobulin (Ig)-like domain	97.88
smart00406	81	IGv Immunoglobulin V-Type.	97.88
PHA03270	466	envelope glycoprotein C; Provisional	97.84
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	97.79
PHA03269	566	envelope glycoprotein C; Provisional	97.77
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	97.76
cd00096	74	Ig Immunoglobulin domain. Ig: immunoglobulin (Ig)	97.74
cd05884	83	Ig2_Necl-3 Second immunoglobulin (Ig)-like domain	97.72
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	97.63
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	97.62
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	97.61
PHA02982	251	hypothetical protein; Provisional	97.6
PHA03273	486	envelope glycoprotein C; Provisional	97.57
cd05847	94	IgC_CH2_IgE CH2 domain (second constant Ig domain	97.53
PHA02633	63	hypothetical protein; Provisional	97.5
PHA03271	490	envelope glycoprotein C; Provisional	97.48
smart00407	75	IGc1 Immunoglobulin C-Type.	97.44
cd07696	96	IgC_CH3 CH3 domain (third constant Ig domain of th	97.43
cd07699	100	IgC_L Immunoglobulin Constant domain. IgC_L: Immun	97.41
cd05772	111	IgC_SIRP Signal-regulatory protein (SIRP) immunogl	97.35
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	97.15
cd05768	102	IgC_CH4 CH4 domain (fourth constant Ig domain of t	97.14
cd05721	115	IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic	97.14
PF07654	83	C1-set: Immunoglobulin C1-set domain; InterPro: IP	97.11
cd05766	94	IgC_MHC_II_beta Class II major histocompatibility	97.09
cd05769	115	IgC_TCR_beta T cell receptor (TCR) beta chain cons	97.06
cd05719	95	Ig2_PVR_like Second immunoglobulin (Ig) domain of	97.05
PHA02982	251	hypothetical protein; Provisional	97.02
cd04986	99	IgC_CH2 CH2 domain (second constant Ig domain of t	97.02
KOG1480|consensus	909		96.99
cd05770	93	IgC_beta2m Class I major histocompatibility comple	96.97
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	96.96
cd07692	65	Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of	96.93
cd07704	97	Ig2_Nectin-3-4_like Second immunoglobulin (Ig) dom	96.93
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	96.91
PHA02633	63	hypothetical protein; Provisional	96.89
cd07697	96	IgC_TCR_gamma T cell receptor (TCR) gamma chain co	96.89
cd07703	95	Ig2_Nectin-2_like Second immunoglobulin (Ig) domai	96.89
PHA03042	286	CD47-like protein; Provisional	96.75
cd04985	95	IgC_CH1 CH1 domain (first constant Ig domain of th	96.71
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	96.67
cd07691	69	Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain	96.47
PF08204	130	V-set_CD47: CD47 immunoglobulin-like domain; Inter	96.43
KOG4597|consensus	560		96.24
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	96.24
PHA03269	566	envelope glycoprotein C; Provisional	95.94
PF07354	271	Sp38: Zona-pellucida-binding protein (Sp38); Inter	95.75
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	95.68
cd05890	98	Ig2_Nectin-1_like Second immunoglobulin (Ig) domai	95.62
cd07689	99	Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain	95.51
PF11465	108	Receptor_2B4: Natural killer cell receptor 2B4; In	95.42
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	95.14
PHA03270	466	envelope glycoprotein C; Provisional	95.05
PF02480	439	Herpes_gE: Alphaherpesvirus glycoprotein E; InterP	95.03
TIGR00864	2740	PCC polycystin cation channel protein. Note: this	94.9
PHA02914	500	Immunoglobulin-like domain protein; Provisional	94.34
PHA03282	540	envelope glycoprotein E; Provisional	94.27
KOG1480|consensus	909		94.19
PHA03271	490	envelope glycoprotein C; Provisional	93.92
PHA03042	286	CD47-like protein; Provisional	93.8
PHA03283	542	envelope glycoprotein E; Provisional	93.78
PHA03286	492	envelope glycoprotein E; Provisional	93.23
PHA02865	338	MHC-like TNF binding protein; Provisional	93.21
KOG4597|consensus	560		93.21
PHA03273	486	envelope glycoprotein C; Provisional	92.92
PHA03240	258	envelope glycoprotein M; Provisional	90.72
PHA03052	69	Hypothetical protein; Provisional	89.88
PHA03240	258	envelope glycoprotein M; Provisional	89.81
PF02124	211	Marek_A: Marek's disease glycoprotein A; InterPro:	89.12
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	86.86
PF03921	91	ICAM_N: Intercellular adhesion molecule (ICAM), N-	86.58
PHA02865	338	MHC-like TNF binding protein; Provisional	85.35
PHA03052	69	Hypothetical protein; Provisional	82.68
PHA03112	141	IL-18 binding protein; Provisional	82.53
KOG0613|consensus	1205		81.92
PF05790	80	C2-set: Immunoglobulin C2-set domain; InterPro: IP	80.88
PF06832	89	BiPBP_C: Penicillin-Binding Protein C-terminus Fam	80.43
PF06328	89	Lep_receptor_Ig: Ig-like C2-type domain; InterPro:	80.27
KOG1026|consensus	774		80.14

>KOG3513|consensus

Probab=100.00  E-value=7.3e-33  Score=247.48  Aligned_cols=265  Identities=23%  Similarity=0.357  Sum_probs=208.6

Q ss_pred             CCCCceecC-CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEP-VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...|.+..+ ++......|+.+.|.|.+.|.|.|++.|.|.++..+          ..+......   ...|.|.|++.+
T Consensus       238 ~~~P~i~~~~p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~~----------~~r~~~~~~---~~vL~I~nv~~~  304 (1051)
T KOG3513|consen  238 EYAPKILVPFPETETALKGQSVKLECFALGNPTPQIKWRKVDGKPP----------PRRATYSNY---GKVLKIPNVQYE  304 (1051)
T ss_pred             ccCCccccCCCCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCCC----------Ccceeeecc---ccEEEecccCcC
Confidence            456666554 557888999999999999999999999999876432          122222211   127999999999


Q ss_pred             CCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe---e
Q psy15734         98 DRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE---L  173 (314)
Q Consensus        98 d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~---~  173 (314)
                      |+|.|.|.+.|. |.......|.|..+|.+...+  .+..+..|+++.|.|.+.|.|.|.++|++ ++.++.....   .
T Consensus       305 D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~--~d~~~~~gs~v~~eC~a~g~P~p~v~Wlk-Ng~pl~~~~r~~~~  381 (1051)
T KOG3513|consen  305 DAGEYECIAENSRGSATHSGHVTVYAPPYWLQKP--QDTEADTGSNVTLECKASGKPNPTVKWLK-NGEPLEPAERDPRY  381 (1051)
T ss_pred             CCeEEEEEEecccccceeeEEEEEecCchhhccc--ceeEecCCCCeEEEEEecCCCCCceEEee-CCeecCccCCCcce
Confidence            999999999875 677788899999999998754  77889999999999999999999999999 8877764433   1


Q ss_pred             C-----------------------------------------CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEe
Q psy15734        174 V-----------------------------------------PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWT  210 (314)
Q Consensus       174 ~-----------------------------------------~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~  210 (314)
                      .                                         +|.|...+  ..+.+..|.++.|.|...+.|.|.+.|.
T Consensus       382 ~i~~g~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~~W~  461 (1051)
T KOG3513|consen  382 KIDDGTLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKVSWL  461 (1051)
T ss_pred             EEeCCEEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceEEEE
Confidence            1                                         45555444  3347889999999999999999999999


Q ss_pred             cCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--EEcccccc
Q psy15734        211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--RKMSRLHM  288 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--~~~~~~~~  288 (314)
                      ++++ .+.++.++.+  .+++     +|.|.+++++|+|.|+|.|.|..|.+.....|.|...+.-.+..  ..+..+++
T Consensus       462 k~~~-~~~~~~r~~i--~edG-----tL~I~n~t~~DaG~YtC~A~N~~G~a~~~~~L~Vkd~tri~~~P~~~~v~~g~~  533 (1051)
T KOG3513|consen  462 KGGE-KLLQSGRIRI--LEDG-----TLEISNVTRSDAGKYTCVAENKLGKAESTGNLIVKDATRITLAPSNTDVKVGES  533 (1051)
T ss_pred             cCCc-ccccCceEEE--CCCC-----cEEecccCcccCcEEEEEEEcccCccceEEEEEEecCceEEeccchhhhccCce
Confidence            9755 6666666554  5777     99999999999999999999999999999999998775333311  23445566


Q ss_pred             EeEEEEEeeccCC--CccceE
Q psy15734        289 GAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       289 g~~~C~a~~~~~~--~~~w~v  307 (314)
                      ..+.|.+.-++..  .+.|..
T Consensus       534 v~l~Ce~shD~~ld~~f~W~~  554 (1051)
T KOG3513|consen  534 VTLTCEASHDPSLDITFTWKK  554 (1051)
T ss_pred             EEEEeecccCCCcceEEEEEE
Confidence            6799999877755  445654

>KOG3513|consensus

Probab=100.00  E-value=2.4e-31  Score=237.88  Aligned_cols=274  Identities=24%  Similarity=0.389  Sum_probs=207.0

Q ss_pred             CCCcee-cCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         20 DMPRFA-EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        20 ~~p~~~-~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..+.|. .....+.+.+|+.+.|.|... +.|.+.+.|..+....+.      ...+.|+....+    +.|.|.++..+
T Consensus       134 ~i~~F~~e~~~~v~v~eG~~~~L~C~pP~~~P~l~~~W~~~~~~~~~------~~~~~r~~~~~~----G~Lyfs~V~~~  203 (1051)
T KOG3513|consen  134 FIPKFKKEERSPVEVEEGDGVVLPCNPPAHFPPLRYYWMLNEFPHFV------QIDNRRVFSQEN----GNLYFSNVETS  203 (1051)
T ss_pred             ccccCccccCCcEEEEeCCceEEeCCCCCCCCCccEEehhccCCccc------ccCcceeEeccc----ceEEEeecchh
Confidence            344554 346788999999999999984 467899999986544322      122335554443    37999999999


Q ss_pred             CCeEEEEEEecC----CCcceeEEEEEE-------eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCce
Q psy15734         98 DRGWYMCQINTV----PMTSQKGYLQVV-------VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA  166 (314)
Q Consensus        98 d~G~Y~C~~~~~----~~~~~~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~  166 (314)
                      |.+.|.|.+.+.    ......+.|.+.       .+|.+.... +.......|+.+.|.|.+.|+|.|++.|.+.++.+
T Consensus       204 D~~~Y~C~a~~~~~~~~v~~~~~~L~~~~~~~~~~~~P~i~~~~-p~~~~a~~G~~v~LECfA~G~P~P~i~W~k~~g~~  282 (1051)
T KOG3513|consen  204 DFGNYICSATFPSTQTIVQGPPFPLIVRSNNVMREYAPKILVPF-PETETALKGQSVKLECFALGNPTPQIKWRKVDGKP  282 (1051)
T ss_pred             hcCceEEEEEchhhcccccCCceeEEEcccccccccCCccccCC-CCcccccCCCeEEEEEEecCCCCCcEEEEeCCCCC
Confidence            999999999653    222333445542       245555443 44667789999999999999999999999987765


Q ss_pred             eecCCeeC----------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCce
Q psy15734        167 INYNGELV----------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL  206 (314)
Q Consensus       167 ~~~~~~~~----------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  206 (314)
                      +.......                                        +|.+...+++..+..|+++.|.|.+.|.|.|.
T Consensus       283 ~~~r~~~~~~~~vL~I~nv~~~D~G~Y~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~  362 (1051)
T KOG3513|consen  283 PPRRATYSNYGKVLKIPNVQYEDAGEYECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPT  362 (1051)
T ss_pred             CCcceeeeccccEEEecccCcCCCeEEEEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCc
Confidence            44221111                                        88888899999999999999999999999999


Q ss_pred             eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE---------------
Q psy15734        207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN---------------  271 (314)
Q Consensus       207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~---------------  271 (314)
                      +.|+++ +..+....+.......++     .|.|.+++..|+|.|+|.|+|.+|...+++.|+|.               
T Consensus       363 v~WlkN-g~pl~~~~r~~~~~i~~g-----~L~is~v~~~dsg~YQC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~  436 (1051)
T KOG3513|consen  363 VKWLKN-GEPLEPAERDPRYKIDDG-----TLIISNVQESDSGVYQCIAENKYGTIYANAELKVLASAPVFPLNPVERKV  436 (1051)
T ss_pred             eEEeeC-CeecCccCCCcceEEeCC-----EEEEEecccccCeEEEeeeecccceEeeeeEEEEEccCCCCCCCccceEE
Confidence            999997 555555555333334555     99999999999999999999999999999999883               


Q ss_pred             --------------------------------------ecCCCeeEEEEccccccEeEEEEEeeccCCCccceEEEEE
Q psy15734        272 --------------------------------------LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV  311 (314)
Q Consensus       272 --------------------------------------~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v  311 (314)
                                                            ..+...|.|.++++.|.|.|+|.|.|..+ ...-.+.|.|
T Consensus       437 ~a~~g~~v~i~C~~~asP~p~~~W~k~~~~~~~~~r~~i~edGtL~I~n~t~~DaG~YtC~A~N~~G-~a~~~~~L~V  513 (1051)
T KOG3513|consen  437 MAVVGGTVTIDCKPFASPKPKVSWLKGGEKLLQSGRIRILEDGTLEISNVTRSDAGKYTCVAENKLG-KAESTGNLIV  513 (1051)
T ss_pred             EEEeCCeEEEeeccCCCCcceEEEEcCCcccccCceEEECCCCcEEecccCcccCcEEEEEEEcccC-ccceEEEEEE
Confidence                                                  13567788899999999999999999874 3334444444

>KOG4194|consensus

Probab=99.95  E-value=2e-26  Score=193.33  Aligned_cols=256  Identities=24%  Similarity=0.359  Sum_probs=190.4

Q ss_pred             eeeeccCCCCCceecCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCceeEE--EeeeeeeecCcCEEEEeC-Ccee
Q psy15734         12 FKTKCEKPDMPRFAEPVANVTATVGKEALMACVVEN--LREYKVAWVKMITQTIL--SIHHKVVTQNKRVSITFN-DHRS   86 (314)
Q Consensus        12 ~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~--~~~~~~~~~~~~~~~~~~-~~~~   86 (314)
                      ....+....+|++...|+.+.+..|++++|+|.+.+  ..+..+.|.+++.....  ......+....|.....+ ..-.
T Consensus       494 ~~lvC~DspkpqI~~qPe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~  573 (873)
T KOG4194|consen  494 ANLVCDDSPKPQIVTQPETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYT  573 (873)
T ss_pred             hhceecCCCCcceecCchHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhh
Confidence            445566778999999999999999999999999965  56789999985432110  000000111111000000 0112


Q ss_pred             EEEEEeeecCCCCeEEEEEEecC--CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCC
Q psy15734         87 WFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG  164 (314)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~  164 (314)
                      +.|++.|+...|.|.|+|.+.|.  ..-+..+.|.|...|.+...  |.+.+...|+.+.|.|.+.|.|.|+|.|.+.+|
T Consensus       574 ~~L~L~nVt~td~grYQCVvtN~FGStysqk~KltV~~~PsFtkt--P~dltl~tg~mArl~CaAtG~P~PeIawqkdgg  651 (873)
T KOG4194|consen  574 AILHLDNVTFTDEGRYQCVVTNHFGSTYSQKAKLTVNQAPSFTKT--PEDLTLRTGQMARLECAATGHPRPEIAWQKDGG  651 (873)
T ss_pred             heeeeeeeecccCceEEEEEecccCcchhheeEEEeeccCccccC--cccceeecccceeeeeeccCCCCcceeehhcCC
Confidence            37999999999999999999875  33466788999999999876  478899999999999999999999999999655


Q ss_pred             ceeecCCeeC--------------------------------------------CCeEEcCCCcceeecCccEEEEEEEe
Q psy15734        165 KAINYNGELV--------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE  200 (314)
Q Consensus       165 ~~~~~~~~~~--------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~  200 (314)
                      ..++......                                            .|.+.+|..+..|..|+.+.|.|.+.
T Consensus       652 tdFPAA~eRRl~Vmpedd~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~  731 (873)
T KOG4194|consen  652 TDFPAARERRLHVMPEDDVFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAE  731 (873)
T ss_pred             CCCchhhhheeeecCCCCEEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecC
Confidence            5444221110                                            67777788888999999999999999


Q ss_pred             ecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        201 AFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       201 g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      +.|. |...|+|+++.++..... .. ...+.     .|.+.+...+|+|.|+|+..|..|.....+.+.|...++.
T Consensus       732 ~~~a~pr~~W~k~d~pil~t~rh-~f-~d~dQ-----llvv~~~~~~daG~yTcem~~~~~~~~~~i~l~~~~~~~~  801 (873)
T KOG4194|consen  732 GAPADPRLEWFKEDKPILITERH-TF-PDGDQ-----LLVVKENLVEDAGIYTCEMSNTLGTERIHICLLVYQKKKC  801 (873)
T ss_pred             CCCCCccccccCCCCceEEeecc-cC-CCCCe-----EEEEEehhhhhcceEEEEEEeeccceeeEEEEEEeecCCc
Confidence            9988 999999987776655422 11 12232     7888999999999999999999998888888777666544

>KOG4221|consensus

Probab=99.94  E-value=1.2e-25  Score=201.19  Aligned_cols=268  Identities=16%  Similarity=0.226  Sum_probs=194.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC-
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE-   96 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-   96 (314)
                      .+-.|+.++++.  .+|..+.|.|.....  +.+.+.|.+ |+..+.      ...+.+..+..+    ++|.|.++.. 
T Consensus        40 ~~~~f~~ep~d~--~~~~svlLecs~~~~~~~~~~i~wkk-Dg~~l~------e~~d~~~~~LsN----gSl~i~~v~~~  106 (1381)
T KOG4221|consen   40 TPLQFLLEPSDA--MEGSSVLLECSAYAAGGTSVKIEWKK-DGSQLN------EVYDDRRQLLSN----GSLYISSVLAS  106 (1381)
T ss_pred             CcceEEeccccc--ccccceEEeccccccCCCCeeEEEcc-Cchhhh------hhhhhHHhhccC----CceeEeeeccc
Confidence            345666666644  899999999998443  478999998 443221      111233333333    3788888876 


Q ss_pred             ----CCCeEEEEEEecC---CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734         97 ----TDRGWYMCQINTV---PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY  169 (314)
Q Consensus        97 ----~d~G~Y~C~~~~~---~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~  169 (314)
                          -|.|.|+|.+.-.   ...++.+.|.+...+.+....  .+.++..|+.+.|.|.+.+.|.|.+.|.+ +..++..
T Consensus       107 kh~~~~eg~Yqc~atv~~~gsi~Sr~a~v~~a~~~~f~~~~--~~~t~~~g~ta~f~c~vn~e~~p~i~w~k-n~~pl~~  183 (1381)
T KOG4221|consen  107 KHNKVDEGVYQCLATVEDVGSILSRTAKVALAGLADFALQP--ESTTLLYGQTALFSCEVNAEPVPTIMWLK-NDQPLPL  183 (1381)
T ss_pred             ccccccCceEEEEEEccccceeecceEEEEecccCccccCc--cceeEecCCcEEEEEEEcCccCceeEEec-ccccccC
Confidence                8899999999532   344666777777777776654  66788999999999999998999999999 6666655


Q ss_pred             CCeeC------------------------------------------------CCeEEcCCCcceeecCccEEEEEEEee
Q psy15734        170 NGELV------------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEA  201 (314)
Q Consensus       170 ~~~~~------------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g  201 (314)
                      .+++.                                                ...|...+....+..|+++.|.|.+.|
T Consensus       184 ~~r~i~lpsG~L~I~~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~  263 (1381)
T KOG4221|consen  184 DSRVIVLPSGALEISGLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSG  263 (1381)
T ss_pred             CCcEEEcCCCcEEecccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecC
Confidence            54332                                                223455667778999999999999999


Q ss_pred             cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE
Q psy15734        202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR  281 (314)
Q Consensus       202 ~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~  281 (314)
                      .|+|+|.|.+++..+...+  +++.....+     .|.|.+++..|+|.|+|.|.|......+...|.|..+|+-.-...
T Consensus       264 ~p~p~v~Wlrng~~i~~ds--~rivl~g~~-----slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~  336 (1381)
T KOG4221|consen  264 VPKPSVKWLRNGEKISVDS--YRIVLVGGS-----SLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPT  336 (1381)
T ss_pred             CCCCceEEeeCCeeeeecc--eEEEEeccc-----ceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCc
Confidence            9999999999654444444  555555454     999999999999999999999777778888888888754222222


Q ss_pred             Ecc--ccccEeEEEEEeeccCCCccceEEEE
Q psy15734        282 KMS--RLHMGAYLCIASNGVVPSVSHRIMVT  310 (314)
Q Consensus       282 ~~~--~~~~g~~~C~a~~~~~~~~~w~v~l~  310 (314)
                      ...  +...-.+.|.+.+.|.|.+.|--..+
T Consensus       337 ~l~A~e~~die~ec~~~g~p~p~v~w~kNgd  367 (1381)
T KOG4221|consen  337 TLVAHESMDIEFECPVSGKPIPTVRWYKNGD  367 (1381)
T ss_pred             ceeeeeccceeEeCCCCCCCcceEEEEecCc
Confidence            221  23334699999999999999965443

>KOG4221|consensus

Probab=99.92  E-value=2.3e-23  Score=186.85  Aligned_cols=236  Identities=28%  Similarity=0.452  Sum_probs=185.3

Q ss_pred             eeeccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEe
Q psy15734         13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        13 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   92 (314)
                      .+.+.....+.|...+.+.++..|+++.|.|.+.+.+.+.+.|.+++. .        ...+.|+.+..++    .|.|.
T Consensus       132 ~a~v~~a~~~~f~~~~~~~t~~~g~ta~f~c~vn~e~~p~i~w~kn~~-p--------l~~~~r~i~lpsG----~L~I~  198 (1381)
T KOG4221|consen  132 TAKVALAGLADFALQPESTTLLYGQTALFSCEVNAEPVPTIMWLKNDQ-P--------LPLDSRVIVLPSG----ALEIS  198 (1381)
T ss_pred             eEEEEecccCccccCccceeEecCCcEEEEEEEcCccCceeEEecccc-c--------ccCCCcEEEcCCC----cEEec
Confidence            344455677888888999999999999999999998888999999553 2        2234455554443    79999


Q ss_pred             eecCCCCeEEEEEEecC--CCcceeEEEEEEeCCce----eeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCce
Q psy15734         93 DVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRI----LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA  166 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~----~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~  166 (314)
                      +++..|.|.|+|.+.+.  .+.+..+.|.|...|..    .....+...++.+|+++.|.|.+.+.|.|.|.|.+ |+..
T Consensus       199 ~~qp~d~g~yrc~vt~g~~~r~S~~a~ltv~s~~~~~~~~~fl~~p~~~~v~~g~~v~leCvvs~~p~p~v~Wlr-ng~~  277 (1381)
T KOG4221|consen  199 GLQPSDTGEYRCVVTGGASQRTSNEAELTVLSDPGALNKLVFLDEPSNAVVVEGDDVVLECVVSGVPKPSVKWLR-NGEK  277 (1381)
T ss_pred             ccccCCCceEEEEEecCCcCCccceeEEEecCCcccccceeeecCCCccccccCCcEEEEEEecCCCCCceEEee-CCee
Confidence            99999999999999764  34466778888743332    22234677889999999999999999999999999 8887


Q ss_pred             eecCCeeC------------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734        167 INYNGELV------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       167 ~~~~~~~~------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  204 (314)
                      +..++...                                          +|.|...+....+.++.++.|.|.+.|.|.
T Consensus       278 i~~ds~rivl~g~~slliS~a~~~dSg~YtC~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~  357 (1381)
T KOG4221|consen  278 ISVDSYRIVLVGGSSLLISNATDDDSGKYTCRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPI  357 (1381)
T ss_pred             eeecceEEEEecccceEEeccccccCceEEEEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCc
Confidence            76654221                                          777777788888889999999999999999


Q ss_pred             ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        205 SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       205 p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      |.+.|+++ ++....+..+.+  ..++     .|+|.-+...|.|.|+|.++|..|.......+.|
T Consensus       358 p~v~w~kN-gd~~ipsdy~ki--~~~~-----~lrIlgi~~sdeg~yQcvaen~~G~a~a~a~l~v  415 (1381)
T KOG4221|consen  358 PTVRWYKN-GDRIIPSDYFKI--VGGG-----NLRILGIVKSDEGFYQCVAENDAGSAQAAAQLEV  415 (1381)
T ss_pred             ceEEEEec-CcccCcccceEe--cCCC-----CcEEEEEecccchhhhhhhccCcccccchhhhee
Confidence            99999997 444444554443  2333     5999999999999999999999999887777644

>KOG4222|consensus

Probab=99.92  E-value=7.5e-24  Score=188.85  Aligned_cols=228  Identities=22%  Similarity=0.341  Sum_probs=172.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         24 FAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |-..++.+.+..|+.+.|.|.- .+.+.+.+.|.|++....       +....++.+...    +.|.|.|++++|+|.|
T Consensus       134 frv~prd~~~a~ge~avlEcgpP~ghpeptvSw~Kdg~pl~-------~~~~~~~~lisg----G~LlIsnvrksD~GtY  202 (1281)
T KOG4222|consen  134 FRVSPRDVQAAVGEEAVLECGPPRGHPEPTVSWVKDGKPLD-------HYDVPIIALISG----GNLLISNVRKSDEGTY  202 (1281)
T ss_pred             cccCcccccccccceeEEeccCCCCCCCCcceeecCCCccc-------cccceeEEEecC----CcEEEeccccCCCcee
Confidence            4445677889999999999987 567889999999554322       111222333222    3799999999999999


Q ss_pred             EEEEecC--CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------
Q psy15734        103 MCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------  174 (314)
Q Consensus       103 ~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------  174 (314)
                      .|.+.|.  .+.+...+|.|+++|.+...+  .+..+..|..+.+.|.+.|.|.|.+.|.+ ++..++......      
T Consensus       203 ~CVatNmvG~ReS~~A~lsv~e~P~f~~rp--~~~~v~~g~~~~f~c~v~GdP~P~Vrwkk-~~~~~P~~ry~i~~d~qt  279 (1281)
T KOG4222|consen  203 ACVATNMVGERESIPARLSVQEKPWFWKRP--KDLAVLVGAAAEFDCRVGGDPQPTVRWKK-DDPSLPRSRYSILDDTQT  279 (1281)
T ss_pred             eeeecccccccccccceeeeccCCcccccc--ccceeecccccccccccCCCCCCceeeec-cCCCCCccceeeeecccc
Confidence            9999775  355667899999999987754  77888899999999999999999999999 444433221110      


Q ss_pred             -----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeec
Q psy15734        175 -----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT  219 (314)
Q Consensus       175 -----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~  219 (314)
                                                         +|.|...+.+..+..|..++|.|.+.|.|.|.+.|.+.+...++.
T Consensus       280 l~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq~v~lg~~vt~pc~~~gnP~PavfW~keg~q~llf  359 (1281)
T KOG4222|consen  280 LRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQKVALGGTVTFPCETLGNPPPAVFWLKEGSQDLLF  359 (1281)
T ss_pred             ccccccCCCcccceeeeccccccccccccceEEecCcccccccCccccccCceEEeeeecCCCCCcceEEeccCcceecc
Confidence                                               777777788888999999999999999999999999986655544


Q ss_pred             C-----CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        220 G-----DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       220 ~-----~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      .     .+.+.+....+     +|.|.+++..|.|.|.|...+..|.......+.+
T Consensus       360 ~~~p~~~~~r~svs~~g-----~L~it~v~~~d~g~Yvcq~~~~~~ss~~~a~~~q  410 (1281)
T KOG4222|consen  360 SASPPSSNGRGSVSPTG-----TLTITNVRQSDEGYYVCQTQTSAGSSLTKAYLEQ  410 (1281)
T ss_pred             cCCCCCcCccceecCCC-----CcccccccccccceEeecccccccccccceeEEE
Confidence            2     22233444555     9999999999999999998887776644444433

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.91  E-value=1.5e-22  Score=167.96  Aligned_cols=213  Identities=14%  Similarity=0.222  Sum_probs=137.3

Q ss_pred             ceEEEcCCcEEEEEEe-----cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         30 NVTATVGKEALMACVV-----ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~-----~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ...+.+|+.+.|.|.+     .+.+.+.+.|+|++...            .+.....++   ..|.|.++..+|+|.|+|
T Consensus        35 ~~~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~------------~~~~~~~~g---~~l~i~~~~~~DsG~Y~C   99 (326)
T PHA02785         35 SFMELENEPVILPCPQINTLSSGYNILDILWEKRGADN------------DRIIPIDNG---SNMLILNPTQSDSGIYIC   99 (326)
T ss_pred             hhhhhcCCCEEEECCCccccccCCCCceEEEEECCCcc------------ceEEEccCC---ceEEEcccCcccCeEEEE
Confidence            3456689999999997     57788899999965320            010011111   148899999999999999


Q ss_pred             EEecC-CCcceeEEEEEEeC--CceeeecCcceeEEecCceEEEEEEe-----cccCCCceEEEcCCCce----e--ecC
Q psy15734        105 QINTV-PMTSQKGYLQVVVP--PRILLDRTSTDVVVREGTEVTLECSA-----VGYPEPYVAWRREDGKA----I--NYN  170 (314)
Q Consensus       105 ~~~~~-~~~~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~-----~~~p~p~~~W~~~~~~~----~--~~~  170 (314)
                      .+.|. +.....+.|.|...  +.+....  ....+.+|..+.|.|..     .+.|.|.+.|++ +...    +  ..+
T Consensus       100 ~a~N~~g~~~~s~~L~V~~~~~~~~~~~~--~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k-~~~~~~~r~~~~~~  176 (326)
T PHA02785        100 ITKNETYCDMMSLNLTIVSVSESNIDLIS--YPQIVNERSTGEMVCPNINAFIASNVNADIIWSG-HRRLRNKRLKQRTP  176 (326)
T ss_pred             EEECCCcceEEEEEEEEEecCCCccceee--ccceecccCcEEEECCChhhcccCCCCceEEEcc-CCccCCcceEecCC
Confidence            99876 34455667777653  2232222  33446789999999972     356889999987 3311    0  001


Q ss_pred             CeeC----------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCc---ee
Q psy15734        171 GELV----------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS---LN  207 (314)
Q Consensus       171 ~~~~----------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~~  207 (314)
                      +.+.                                        ||.+.. +....+..|++++|.|.+.|.|.+   .+
T Consensus       177 ~~L~i~~v~~~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~-p~~~~~~~G~~v~L~C~a~g~P~~~~~~v  255 (326)
T PHA02785        177 GIITIEDVRKNDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQL-PEGVVTSIGSNLTIACRVSLRPPTTDADV  255 (326)
T ss_pred             CeEEEeecChhhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecC-CCcEEecCCCcEEEEEEEECCCCCCCceE
Confidence            1111                                        233322 345567789999999999998874   89


Q ss_pred             EEecCCCeeeecC---CceeeeEee------CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        208 YWTNEKGDMIITG---DDYEDSRLI------NGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       208 ~W~~~~~~~~~~~---~~~~~~~~~------~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      .|++++ ..+...   ...+.....      ......+.|.|.+++.+|+|.|+|.|.|..|..
T Consensus       256 ~W~kng-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~V~~~D~G~Y~C~A~n~~~~~  318 (326)
T PHA02785        256 FWISNG-MYYEEDDEDGDGRISVANKIYTTDKRRVITSRLNINPVKEEDATTFTCMAFTIPSIS  318 (326)
T ss_pred             EEEECC-EECCCcCCCCceeEEEecCccccccceeeeEEEEECCcchhcCeeeEEEEEeccCce
Confidence            999974 333211   111111111      111224589999999999999999999988543

>KOG4222|consensus

Probab=99.91  E-value=1.4e-23  Score=187.19  Aligned_cols=270  Identities=21%  Similarity=0.311  Sum_probs=194.3

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee--
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV--   94 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~--   94 (314)
                      ....+|+++.-+....+..|+.++|.|.+++.|.+.+.|||++ +....    ....+.|+-+ .+    ++|.+..+  
T Consensus        27 ~qd~~p~iiehp~d~vvs~~~patlnc~asG~ppPti~w~k~G-~~~~~----~e~~shR~~l-p~----gsLf~l~~ah   96 (1281)
T KOG4222|consen   27 AQDQPPRIIEHPHDLVVSKGEPATLNCKASGDPPPTIEWYKDG-ENVFK----GEPGSHRFLL-PD----GSLFLLRLAH   96 (1281)
T ss_pred             cccCCCceEecchhhhccCCCCceeecCCCCCCCCceecccCC-cccCC----CCCCCcceec-CC----ccEEEEeccc
Confidence            3456889999999999999999999999999999999999954 32111    0111122221 11    13433332  


Q ss_pred             ---cCCCCeEEEEEEecC--CCcceeEEEEEEeCC-ceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCcee
Q psy15734         95 ---QETDRGWYMCQINTV--PMTSQKGYLQVVVPP-RILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAI  167 (314)
Q Consensus        95 ---~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~  167 (314)
                         ...|.|.|+|.+.|.  ...+....|.+..-+ .+...  +.++.+..|+.+.|.|.- .|.|.|.+.|.| ++.++
T Consensus        97 g~~a~~d~G~y~cvasn~~g~avSr~a~L~vavlrddfrv~--prd~~~a~ge~avlEcgpP~ghpeptvSw~K-dg~pl  173 (1281)
T KOG4222|consen   97 GKKAGHDHGVYSCVASNRLGEAVSRGASLIVAVLRDDFRVS--PRDVQAAVGEEAVLECGPPRGHPEPTVSWVK-DGKPL  173 (1281)
T ss_pred             CCcccCCCceeEeeecCccceeeecCceEEEEEechhcccC--cccccccccceeEEeccCCCCCCCCcceeec-CCCcc
Confidence               233899999999765  233455566665433 33332  345667789999999986 477999999999 67665


Q ss_pred             ecC----------CeeC----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecC
Q psy15734        168 NYN----------GELV----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFP  203 (314)
Q Consensus       168 ~~~----------~~~~----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p  203 (314)
                      ...          +.+.                                  +|.|...+.+..+..|..+.+.|.+.|.|
T Consensus       174 ~~~~~~~~~lisgG~LlIsnvrksD~GtY~CVatNmvG~ReS~~A~lsv~e~P~f~~rp~~~~v~~g~~~~f~c~v~GdP  253 (1281)
T KOG4222|consen  174 DHYDVPIIALISGGNLLISNVRKSDEGTYACVATNMVGERESIPARLSVQEKPWFWKRPKDLAVLVGAAAEFDCRVGGDP  253 (1281)
T ss_pred             ccccceeEEEecCCcEEEeccccCCCceeeeeecccccccccccceeeeccCCccccccccceeecccccccccccCCCC
Confidence            521          2111                                  77777788888899999999999999999


Q ss_pred             CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--E
Q psy15734        204 ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--R  281 (314)
Q Consensus       204 ~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--~  281 (314)
                      .|.+.|.++++...  -.++.+.. ++.     +|.|.++...|.|.|.|.+.|..|..++...++|+.+|+-....  .
T Consensus       254 ~P~Vrwkk~~~~~P--~~ry~i~~-d~q-----tl~i~r~tp~deg~y~C~a~n~vG~l~asa~ltV~apP~f~kkp~dq  325 (1281)
T KOG4222|consen  254 QPTVRWKKDDPSLP--RSRYSILD-DTQ-----TLRIDRVTPTDEGTYVCPAENLVGGLEASATLTVQAPPSFGKKPRDQ  325 (1281)
T ss_pred             CCceeeeccCCCCC--ccceeeee-ccc-----cccccccCCCcccceeeeccccccccccccceEEecCcccccccCcc
Confidence            99999999655433  33444332 223     99999999999999999999999999999999999987544332  2


Q ss_pred             EccccccEeEEEEEeeccCCCccceE
Q psy15734        282 KMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       282 ~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .+.-.....+.|++.+.|+|.+.|.-
T Consensus       326 ~v~lg~~vt~pc~~~gnP~PavfW~k  351 (1281)
T KOG4222|consen  326 KVALGGTVTFPCETLGNPPPAVFWLK  351 (1281)
T ss_pred             ccccCceEEeeeecCCCCCcceEEec
Confidence            22233334699999999999999964

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.86  E-value=2.4e-20  Score=145.57  Aligned_cols=163  Identities=20%  Similarity=0.334  Sum_probs=101.0

Q ss_pred             CcceEEEcCCcEEEEEEecCC-----------CceEEEEEEcCceeEEEeeeeeeecCcC-----EEEEeCCceeEEEEE
Q psy15734         28 VANVTATVGKEALMACVVENL-----------REYKVAWVKMITQTILSIHHKVVTQNKR-----VSITFNDHRSWFLHL   91 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~-----------~~~~v~W~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~L~i   91 (314)
                      ...+.+.+|+++.|.|.+.+.           ..+.+.|+|.+. .....     ..+.+     +.........+.|.|
T Consensus        29 ~~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s-~~~v~-----~~~~~~~~~~i~~~~~~~r~~~L~I  102 (227)
T PHA02826         29 LTPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDS-LAFVR-----DSGARTKIKKITHNEIGDRSENLWI  102 (227)
T ss_pred             cceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCe-EEEEE-----cCCCccccccccccceecCCCeEEE
Confidence            457889999999999998552           356999999643 21110     01111     000110112348999


Q ss_pred             eeecCCCCeEEEEEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-----cCCCceEEEcCCCc
Q psy15734         92 RDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-----YPEPYVAWRREDGK  165 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~p~~~W~~~~~~  165 (314)
                      .+++.+|+|.|+|.+.+.. .....+.|.|..+        .....+.+|+.+.|.|.+.+     .|.|.+.|++ ++.
T Consensus       103 ~~v~~~DsG~Y~C~a~N~~~~~~~~i~L~V~~~--------~~~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK-ng~  173 (227)
T PHA02826        103 GNVINIDEGIYICTISSGNICEESTIRLTFDSG--------TINYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK-NGN  173 (227)
T ss_pred             CCCChHHCEEEEEEEEECCcceEEEEEEEEecC--------CccceEecCCCEEEEeeCCCCccccCCCceEEEEE-CCE
Confidence            9999999999999998753 3344445555321        12234567788888887652     3456666666 332


Q ss_pred             eeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        166 AINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       166 ~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      +                                                  +....++.+. ..++     +|.|.+++.
T Consensus       174 ~--------------------------------------------------l~~~~r~~~~-~~~~-----~L~I~~V~~  197 (227)
T PHA02826        174 I--------------------------------------------------VLYTDRIQLR-NNNS-----TLVIKSATH  197 (227)
T ss_pred             E--------------------------------------------------CCCCCCEEEe-CCCC-----EEEECcCCH
Confidence            2                                                  2222222211 1122     899999999


Q ss_pred             CCCeEEEEEEeeCCCC
Q psy15734        246 HQFGSYRCVAVNALGE  261 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~  261 (314)
                      +|+|.|+|+|......
T Consensus       198 ~DsG~YtC~a~~~~~g  213 (227)
T PHA02826        198 DDSGIYTCNLRFNKNS  213 (227)
T ss_pred             HhCEEEEEEEEEeECC
Confidence            9999999999986533

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.81  E-value=6.1e-19  Score=119.90  Aligned_cols=97  Identities=18%  Similarity=0.167  Sum_probs=81.1

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.|...+....+..|+.+.|.|.+.|.|+|.+.|+++ +..+....++.+....+    .+.|.|.++..+|+|.|+|.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kd-g~~l~~~~~~~~~~~~~----~s~L~I~~~~~~D~G~Ytc~a   75 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKF-RKQIQEGEGIKIENTEN----SSKLTITEGQQEHCGCYTLEV   75 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEEC-CEEecCCCcEEEEecCC----eeEEEECCCChhhCEEEEEEE
Confidence            5677778888999999999999999999999999997 44454444554433222    258999999999999999999


Q ss_pred             eeCCCCceeEEEEEEEecCCCe
Q psy15734        256 VNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      .|..|...+++.|.|..+|+++
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP   97 (98)
T cd05762          76 ENKLGSRQAQVNLTVVDKPDPP   97 (98)
T ss_pred             EcCCCceeEEEEEEEecCCCCC
Confidence            9999999999999999988764

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>KOG4194|consensus

Probab=99.77  E-value=5.8e-18  Score=142.99  Aligned_cols=169  Identities=16%  Similarity=0.221  Sum_probs=128.9

Q ss_pred             cceeEEecCceEEEEEEeccc--CCCceEEEcCCCceeec---C-------------CeeC-------------------
Q psy15734        132 STDVVVREGTEVTLECSAVGY--PEPYVAWRREDGKAINY---N-------------GELV-------------------  174 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~--p~p~~~W~~~~~~~~~~---~-------------~~~~-------------------  174 (314)
                      |..+....|..++|+|.+.+.  .+..+.|.+.+...-..   +             +...                   
T Consensus       510 Pe~~~al~g~nirftC~a~sssasplsi~WR~dnevq~rv~ved~a~~~~q~r~~~~~e~~~~~~~L~L~nVt~td~grY  589 (873)
T KOG4194|consen  510 PETVSALIGENIRFTCNAYSSSASPLSIEWRKDNEVQPRVDVEDFATFLSQNRNGTFGEREEYTAILHLDNVTFTDEGRY  589 (873)
T ss_pred             chHhhhhhccceEEEEEeccCCCCCceeEeeeccccCcccchhcchhhhhhhccCccchhhhhhheeeeeeeecccCceE
Confidence            455667789999999999873  45589999843221000   0             0000                   


Q ss_pred             ----------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee--cCCceeeeEeeC
Q psy15734        175 ----------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII--TGDDYEDSRLIN  230 (314)
Q Consensus       175 ----------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~--~~~~~~~~~~~~  230 (314)
                                            .|.|...|.+..+..|+...|.|.++|.|.|.|.|.|+++....  ...+..+.. ++
T Consensus       590 QCVvtN~FGStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeIawqkdggtdFPAA~eRRl~Vmp-ed  668 (873)
T KOG4194|consen  590 QCVVTNHFGSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEIAWQKDGGTDFPAARERRLHVMP-ED  668 (873)
T ss_pred             EEEEecccCcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcceeehhcCCCCCchhhhheeeecC-CC
Confidence                                  77888888999999999999999999999999999998775222  222223333 33


Q ss_pred             CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCe--eEEEEccccccEeEEEEEeeccC-CCccce
Q psy15734        231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI--FQIRKMSRLHMGAYLCIASNGVV-PSVSHR  306 (314)
Q Consensus       231 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~--~~~~~~~~~~~g~~~C~a~~~~~-~~~~w~  306 (314)
                      .     .+.|.++..+|.|.|+|.|.|..|..+++.+|.|.+.|...  +....+..++...++|.|.+.++ |.+.|.
T Consensus       669 d-----~f~Itnvk~eD~GiYtC~A~n~AG~isanAtL~V~e~p~f~~PL~~~~V~~get~vlqC~a~~~~a~pr~~W~  742 (873)
T KOG4194|consen  669 D-----VFFITNVKIEDQGIYTCTAQNVAGQISANATLTVLETPSFSIPLEDQLVVVGETLVLQCLAEGAPADPRLEWF  742 (873)
T ss_pred             C-----EEEEecccccccceeEEeeeccccceeeceEEEEecCCcccccccceEEEecceEEEEEecCCCCCCcccccc
Confidence            3     88999999999999999999999999999999999876433  33356667777789999999887 899995

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.76  E-value=9.7e-18  Score=111.74  Aligned_cols=87  Identities=23%  Similarity=0.300  Sum_probs=69.8

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+.+.|.|.+.|.|++.+.|++++..+.....++.+.....++...+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~~~i~~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~L~   80 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKEDRIINPEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGEDRGIIQLT   80 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCCEECCCCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCcceEEEEEE
Confidence            78999999999999999999997533222223454443333444567999999999999999999999999999999999


Q ss_pred             EEecCCC
Q psy15734        270 VNLVDGD  276 (314)
Q Consensus       270 V~~~~~~  276 (314)
                      |..+|.+
T Consensus        81 V~~~P~~   87 (88)
T cd05735          81 VQEPPDP   87 (88)
T ss_pred             EeCCCCC
Confidence            9987654

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.74  E-value=2.4e-17  Score=109.90  Aligned_cols=88  Identities=27%  Similarity=0.373  Sum_probs=72.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++... ....  ++. ..++     .|.|.++..+|+|.|+|.
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~~-~~~~--~~~-~~~~-----~L~I~~v~~~D~G~Y~C~   71 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEPM-PATA--EIS-MSGA-----VLKIFNIQPEDEGTYECE   71 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcCC-CCCC--EEe-cCCC-----EEEECcCChhhCEEEEEE
Confidence            678888888999999999999999999999999999975432 2221  221 1233     899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      |.|..|.....+.|.|+
T Consensus        72 A~N~~G~~~~~~~l~V~   88 (88)
T cd05851          72 AENIKGKDKHQARVYVQ   88 (88)
T ss_pred             EEcCCCceEEEEEEEEC
Confidence            99999999999988773

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.74  E-value=7e-17  Score=109.84  Aligned_cols=88  Identities=18%  Similarity=0.186  Sum_probs=69.3

Q ss_pred             CcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEee-CCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLI-NGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ....+.+|+++.|.|.+.| .|+|.+.|+|+ +..+.......+.... ..+...+.|.|.++..+|+|.|+|.|.|..|
T Consensus        11 ~~~~v~~G~~v~L~c~v~g~~P~p~v~W~Kd-g~~i~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Ytc~A~N~~G   89 (101)
T cd04975          11 TTIFVNLGENLNLVVEVEAYPPPPHINWTYD-NRTLTNKLTEIVTSENESEYRYVSELKLVRLKESEAGTYTFLASNSDA   89 (101)
T ss_pred             ceEEEECCCCEEEEEEEEecCCCCccEEEeC-CeeCCCCcceeEEEeccCcceEEEEEEEeecCHhhCeeEEEEEECCCc
Confidence            4567899999999999999 89999999997 5444433332222211 1234456999999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy15734        261 ETDGFIKVYVN  271 (314)
Q Consensus       261 ~~~~~~~l~V~  271 (314)
                      ..+..+.|.|.
T Consensus        90 ~~~~t~~L~V~  100 (101)
T cd04975          90 SKSLTFELYVN  100 (101)
T ss_pred             cEEEEEEEEEE
Confidence            99999999886

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.72  E-value=6e-17  Score=107.33  Aligned_cols=83  Identities=16%  Similarity=0.159  Sum_probs=66.2

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      .+.+.+|+.+.|.|.+.|.|.|.+.|++++..+.....++.+....+    .+.|.|.++..+|+|.|+|.|.|..|.+.
T Consensus         4 ~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~N~~G~~~   79 (86)
T cd05894           4 TIVVVAGNKLRLDVPISGEPAPTVTWSRGDKAFTETEGRVRVESYKD----LSSFVIEGAEREDEGVYTITVTNPVGEDH   79 (86)
T ss_pred             EEEEEcCCEEEEEeeEeecCCCeEEEEECCEECccCCCeEEEEEcCC----eEEEEECCCccCcCEEEEEEEEeCCCcEE
Confidence            45688999999999999999999999997543332233444332222    35899999999999999999999999999


Q ss_pred             eEEEEEE
Q psy15734        264 GFIKVYV  270 (314)
Q Consensus       264 ~~~~l~V  270 (314)
                      .++.|.|
T Consensus        80 ~~~~l~V   86 (86)
T cd05894          80 ASLFVKV   86 (86)
T ss_pred             EEEEEEC
Confidence            9988865

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.70  E-value=2e-16  Score=106.69  Aligned_cols=89  Identities=17%  Similarity=0.317  Sum_probs=73.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+.....    .++|.|.++..+|+|.|+|.
T Consensus         3 ~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~-g~~l~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~   77 (92)
T cd05747           3 PATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMRE-GQIIVSSQRHQITSTEY----KSTFEISKVQMSDEGNYTVV   77 (92)
T ss_pred             CCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEEC-CEECCCCCcEEEEEcCC----eeEEEECCCCcccCEeEEEE
Confidence            67888888889999999999999999999999999997 44444444444432211    24999999999999999999


Q ss_pred             EeeCCCCceeEEEE
Q psy15734        255 AVNALGETDGFIKV  268 (314)
Q Consensus       255 a~n~~g~~~~~~~l  268 (314)
                      |.|..|....++.|
T Consensus        78 a~N~~G~~~~~~~l   91 (92)
T cd05747          78 VENSEGKQEAQFTL   91 (92)
T ss_pred             EEcCCCCEeEEEEe
Confidence            99999998888776

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.70  E-value=8.9e-17  Score=103.12  Aligned_cols=75  Identities=24%  Similarity=0.373  Sum_probs=58.2

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+....++   ..+|.|.++..+|+|.|+|.|.|..|.......|.|
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~~~i~~~~~r~~~~~~~~g---~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNNEMVQYNTDRISLYQDNSG---RVTLLIKNVNKKDAGWYTVSAVNEAGVATCHARLDV   75 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECCEECcCCCCeEEEEEcCCC---cEEEEECCCChhhCEEEEEEEEcCcCeEEEEEEEeC
Confidence            479999999999999999974433323344443322222   248999999999999999999999999999988865

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.70  E-value=3.5e-16  Score=105.56  Aligned_cols=89  Identities=19%  Similarity=0.251  Sum_probs=67.6

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .+.+....+.+|+++.|.|.+.|.|. |.+.|++.++..+.. ..++.+....+   ..++|.|.++..+|+|.|+|.|.
T Consensus         4 ~~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~~~~r~~v~~~~~---~~~~L~I~~v~~~D~G~YtC~A~   80 (96)
T cd05865           4 DIVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTPNQQRISVVRNDD---YSSTLTIYNANIDDAGIYKCVVS   80 (96)
T ss_pred             EEeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccccCCeEEEEeCCC---CceEEEEeccChhhCEEEEEEEE
Confidence            34455567899999999999999995 799999855654443 33333222111   13599999999999999999999


Q ss_pred             eCC-CCceeEEEEEE
Q psy15734        257 NAL-GETDGFIKVYV  270 (314)
Q Consensus       257 n~~-g~~~~~~~l~V  270 (314)
                      |.. |...+++.|.|
T Consensus        81 N~~~g~~~~s~~l~v   95 (96)
T cd05865          81 NEDEGESEATVNVKI   95 (96)
T ss_pred             cCCCCcEEEEEEEEE
Confidence            996 88888888876

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.70  E-value=2.3e-16  Score=109.43  Aligned_cols=100  Identities=21%  Similarity=0.286  Sum_probs=73.3

Q ss_pred             CCeEEcCCCccee----ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCe
Q psy15734        175 PPMLTIPNQLEGA----FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFG  249 (314)
Q Consensus       175 ~p~~~~~~~~~~v----~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G  249 (314)
                      +|.|..++....+    ..|..+.|.|.+.|.|+|.+.|++++..+.....++.......+....+.|.|.++. .+|.|
T Consensus         4 ~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~g~~l~~~~~r~~~~~~~~~~~~~s~L~I~~v~~~~D~G   83 (109)
T cd05773           4 APDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKNGVPLDLGNPRYEETTEHTGTVHTSILTIINVSAALDYA   83 (109)
T ss_pred             ccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEECCEECCCCCCeEEEEeeccCccceeEEEECcCCccCCCE
Confidence            4566665553222    256899999999999999999999744332233344433333333334689999997 69999


Q ss_pred             EEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        250 SYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      .|+|.|.|..|.+...+.|.|..+|
T Consensus        84 ~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          84 LFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             EEEEEEEeCCccCcEEEEEEecCCC
Confidence            9999999999999999999998765

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.70  E-value=2.7e-16  Score=107.14  Aligned_cols=93  Identities=17%  Similarity=0.276  Sum_probs=69.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc---eeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD---YEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      .|.|...+....+..|+++.|.|.+.|.|.|.+.|++++.. +.....   .++....+  ...+.|.|.++..+|+|.|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~~~-~~~~~~~~~~~~~v~~~--~~~~~L~I~~v~~~D~G~Y   78 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTSTRN-ISSEEKTLDGHIVVRSH--ARVSSLTLKYIQYTDAGEY   78 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECCcc-ccCCccccCccEEEEcC--ccEEEEEEecCccCcCEEE
Confidence            36666666666677799999999999999999999996433 221111   01111111  1235899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEE
Q psy15734        252 RCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V  270 (314)
                      +|.|.|..|.+..++.|.|
T Consensus        79 ~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          79 LCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEecCCCCeeEEEEEEC
Confidence            9999999999999998875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.70  E-value=3.7e-16  Score=105.35  Aligned_cols=86  Identities=20%  Similarity=0.254  Sum_probs=68.8

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      -+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+.   .++|.|.++..+|+|.|+|.|.|..|
T Consensus         7 lp~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G   82 (92)
T cd05737           7 LPDVVTIMEGKTLNLTCTVFGDPDPEVSWLKN-DQALALSDHYNVKVEQGK---YASLTIKGVSSEDSGKYGIVVKNKYG   82 (92)
T ss_pred             CCceEEEeCCCcEEEEEEEEecCCCeEEEEEC-CEECccCCCEEEEEcCCC---EEEEEEccCChhhCEEEEEEEEECCC
Confidence            34556789999999999999999999999997 444444445544332222   24899999999999999999999999


Q ss_pred             CceeEEEEEE
Q psy15734        261 ETDGFIKVYV  270 (314)
Q Consensus       261 ~~~~~~~l~V  270 (314)
                      .....+.|.|
T Consensus        83 ~~~~~~~v~v   92 (92)
T cd05737          83 GETVDVTVSV   92 (92)
T ss_pred             cceEEEEEeC
Confidence            9999988765

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.69  E-value=2.9e-16  Score=105.11  Aligned_cols=87  Identities=25%  Similarity=0.410  Sum_probs=71.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |+.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.... .....   ...++     .|.|.+++.+|+|.|+|.
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~-~~~~~---~~~~~-----~L~i~~v~~~D~G~Y~C~   71 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP-SSAEI---SMSGA-----VLKIPNIQFEDEGTYECE   71 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC-CccEE---EEeCC-----EEEECCCCcccCEEEEEE
Confidence            5667777788889999999999999999999999999755432 22211   12333     999999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      |.|..|....+..|.|
T Consensus        72 a~N~~G~~~~~~~l~V   87 (88)
T cd04968          72 AENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEECCCcEEEEEEEEE
Confidence            9999999999988877

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.69  E-value=2.8e-16  Score=106.88  Aligned_cols=91  Identities=27%  Similarity=0.464  Sum_probs=70.3

Q ss_pred             CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ||.|...+  ....+..|+++.|.|.+.|.|.|.+.|++++ ..+... .++  ....++    +.|.|.++..+|+|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g-~~~~~~~~~~--~~~~~~----~~L~I~~v~~~D~G~Y   73 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIESGEEKY--SFNEDG----SEMTILDVDKLDEAEY   73 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECC-EECcCCCCEE--EEeCCC----CEEEECCCChhhCEEE
Confidence            56666544  3446889999999999999999999999974 333322 222  222222    3799999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEe
Q psy15734        252 RCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +|.|.|..|....++.|.|..
T Consensus        74 ~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          74 TCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEEEcCCCeEEEEEEEEEEe
Confidence            999999999999999998864

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.68  E-value=1.6e-16  Score=102.13  Aligned_cols=75  Identities=21%  Similarity=0.311  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+.....+   ...|.|.++..+|+|.|+|.|.|..|..+.+..|.|
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~l~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V   75 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENESLTHNTDRVSMHQDNCG---YICLLIQGATKEDAGWYTVSAKNEAGIVSCTARLDV   75 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEECCCCCCeEEEEEcCCC---EEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEEEeC
Confidence            479999999999999999975544333333433222222   237999999999999999999999999999988865

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.68  E-value=4.8e-16  Score=105.96  Aligned_cols=87  Identities=17%  Similarity=0.158  Sum_probs=67.4

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEee--CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI--NGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~--~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ...+..|+.+.|.|.+.|+|+|.+.|+|++ ..+............  ..+...++|.|.++..+|+|.|+|.|.|..|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg-~~l~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~~g~   90 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDN-RTLIENLTEITTSEHNVQETRYVSKLKLIRAKEEDSGLYTALAQNEDAV   90 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECC-EECcCCcceEEeccccccceeeccEEEEeeCCHHHCEEEEEEEEcCCce
Confidence            557889999999999999999999999974 444333322111111  11234469999999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy15734        262 TDGFIKVYVN  271 (314)
Q Consensus       262 ~~~~~~l~V~  271 (314)
                      .+.++.|.|.
T Consensus        91 ~~~t~~l~V~  100 (101)
T cd05859          91 KSYTFALQIQ  100 (101)
T ss_pred             EEEEEEEEEE
Confidence            9999998875

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.68  E-value=2.8e-16  Score=100.47  Aligned_cols=73  Identities=23%  Similarity=0.399  Sum_probs=61.4

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|+++ +..+....++.+  ..++     +|.|.+++.+|+|.|+|.|.|..|....+..|.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~-~~~l~~~~r~~~--~~~g-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   72 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKG-TELLVNNSRISI--WDDG-----SLEILNITKLDEGSYTCFAENNRGKANSTGVLS   72 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeC-CEecccCCCEEE--cCCC-----EEEECcCChhHCEEEEEEEECCCCceeEEEEEE
Confidence            68899999999999999999997 444544444433  3445     899999999999999999999999999998886


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        73 ~   73 (73)
T cd05852          73 V   73 (73)
T ss_pred             C
Confidence            5

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.68  E-value=6.9e-16  Score=104.01  Aligned_cols=90  Identities=22%  Similarity=0.385  Sum_probs=77.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....    ..++|.|.++..+|+|.|+|.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~~   75 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPLTSSQRYQIESDG----GSSSLTIKNVTREDAGTYTCVA   75 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEEESSSSEEEEEET----TEEEEEESSESGGGSEEEEEEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccceeeeeeeeeeccc----ceeEEccCCCChhhCEEEEEEE
Confidence            5677778889999999999999999999999999997 6666666666665443    2469999999999999999999


Q ss_pred             eeCCCCceeEEEEEE
Q psy15734        256 VNALGETDGFIKVYV  270 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V  270 (314)
                      .|..|.....+.|.|
T Consensus        76 ~n~~g~~~~~~~l~V   90 (90)
T PF07679_consen   76 SNSSGEATASVNLTV   90 (90)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EECCCEEEEEEEEEC
Confidence            999999999988876

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.68  E-value=8e-16  Score=102.75  Aligned_cols=87  Identities=22%  Similarity=0.321  Sum_probs=68.8

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+++....+.+|+++.|.|.+.|.|. .+.|+++++..+....++.+.  .++.  .+.|.|.++..+|+|.|+|.|.|.
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~~~~r~~~~--~~g~--~~~L~I~~v~~~D~G~Y~C~A~N~   78 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIVSSQRVVVQ--KEGV--RSRLTIYNANIEDAGIYRCQATDA   78 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEecCCCCEEEE--eCCC--eeEEEEecCChHHCEEEEEEEEcC
Confidence            45566778999999999999999998 899998767666555554442  2221  248999999999999999999999


Q ss_pred             CCCc-eeEEEEEE
Q psy15734        259 LGET-DGFIKVYV  270 (314)
Q Consensus       259 ~g~~-~~~~~l~V  270 (314)
                      .|.. .+++.|.|
T Consensus        79 ~G~~~~~~i~l~~   91 (92)
T cd05866          79 KGQTQEATVVLEI   91 (92)
T ss_pred             CCcEEEEEEEEEE
Confidence            9986 67777765

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.67  E-value=8.6e-16  Score=104.89  Aligned_cols=91  Identities=16%  Similarity=0.249  Sum_probs=68.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-eeeec-----CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-DMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      +|.|.. +.+..+.+|+++.|.|.+.|.|.|.+.|++.+. ..+..     ..++.+  ....  ..+.|.|.++..+|+
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~~~~~~~~r~~v--~~~~--~~~~L~I~~v~~~D~   76 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSEGDKSPDGRIEV--KGQH--GESSLHIKDVKLSDS   76 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceeccCCcCcCceEEE--eecC--CeeEEEEeeCCcCCC
Confidence            456644 556789999999999999999999999998532 22211     112222  1111  134899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      |.|+|.|.|..|....++.|.|
T Consensus        77 G~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          77 GRYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEEeccCCcceeEEEEeC
Confidence            9999999999999999988865

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.67  E-value=5.2e-16  Score=104.25  Aligned_cols=87  Identities=17%  Similarity=0.205  Sum_probs=67.0

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ..++....+.+|+.+.|.|.+.|.|.|.+.|++++. .+..........    ....+.|.|.++..+|.|.|+|.|.|.
T Consensus         4 v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~-~~~~~~~~~~~~----~~~~~~L~I~~v~~~D~g~Y~C~A~N~   78 (90)
T cd04972           4 VDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGL-IVIQTRTDTLET----TVDIYNLQLSNITSETQTTVTCTAENP   78 (90)
T ss_pred             ccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCE-EccCCccEEEEe----cCCEEEEEEecCCcccCEEEEEEEECC
Confidence            345566679999999999999999999999999754 333222211111    111348999999999999999999999


Q ss_pred             CCCceeEEEEEE
Q psy15734        259 LGETDGFIKVYV  270 (314)
Q Consensus       259 ~g~~~~~~~l~V  270 (314)
                      .|....++.|.|
T Consensus        79 ~G~~~~~~~L~v   90 (90)
T cd04972          79 VGQANVSVQVTV   90 (90)
T ss_pred             CCceeEEEEEeC
Confidence            999999988764

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.66  E-value=5.2e-16  Score=100.11  Aligned_cols=74  Identities=28%  Similarity=0.517  Sum_probs=60.2

Q ss_pred             cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      +|+++.|.|.+.|.|.|.+.|++++ ..+....++.  ...++     +|.|.++..+|+|.|+|.|.|..|....++.|
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g-~~~~~~~~~~--~~~~~-----~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~~L   72 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGG-SQLSVDRRHL--VLSSG-----TLRISRVALHDQGQYECQAVNIVGSQRTVAQL   72 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECC-EECCCCCCeE--EccCC-----eEEEeeCCHHhCEEEEEEEEeCCCceeEEEEE
Confidence            5899999999999999999999974 3333222222  22333     89999999999999999999999999999888


Q ss_pred             EE
Q psy15734        269 YV  270 (314)
Q Consensus       269 ~V  270 (314)
                      .|
T Consensus        73 ~V   74 (74)
T cd05745          73 TV   74 (74)
T ss_pred             eC
Confidence            65

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.66  E-value=1.1e-15  Score=104.23  Aligned_cols=92  Identities=20%  Similarity=0.274  Sum_probs=67.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc---eeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD---YEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +|.|. ...+..+.+|+++.|.|.+.|.|.|.+.|++++.. +.....   .+......  ...+.|.|.+++.+|+|.|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~~~-~~~~~~~~~~~~~~~~~--~~~~~L~I~~v~~~D~G~Y   77 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRATRN-FSEGDKSLDGRIVVRGH--ARVSSLTLKDVQLTDAGRY   77 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECCcc-cCCCCccccceEEEeCC--ccEEEEEECcCCcCcCEEe
Confidence            35554 34456789999999999999999999999997532 221111   01111111  1235899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEE
Q psy15734        252 RCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V  270 (314)
                      +|.|.|..|....++.|+|
T Consensus        78 ~C~a~N~~G~~~~s~~l~v   96 (96)
T cd05732          78 DCEASNRIGGDQQSMYLEV   96 (96)
T ss_pred             EEEEEeCCCCcEEEEEEeC
Confidence            9999999999999888865

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=99.66  E-value=2.7e-15  Score=101.96  Aligned_cols=94  Identities=17%  Similarity=0.314  Sum_probs=75.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.|...++.+.+..|+.+.|.|.+.|.+.+.+.|+|++ ..+        ..+.++.+...... ..|.|.++..+|+|.
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v~W~kdg-~~l--------~~~~~~~~~~~~~~-s~L~I~~~~~~D~G~   70 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITCTWMKFR-KQI--------QEGEGIKIENTENS-SKLTITEGQQEHCGC   70 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCceEEEECC-EEe--------cCCCcEEEEecCCe-eEEEECCCChhhCEE
Confidence            67888899999999999999999999999999999954 433        22335555443322 379999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEEeCCc
Q psy15734        102 YMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      |+|.+.|. |.....+.|.|.++|.
T Consensus        71 Ytc~a~N~~G~~~~~~~l~V~~~P~   95 (98)
T cd05762          71 YTLEVENKLGSRQAQVNLTVVDKPD   95 (98)
T ss_pred             EEEEEEcCCCceeEEEEEEEecCCC
Confidence            99999876 6667788899988763

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.66  E-value=1.1e-15  Score=99.16  Aligned_cols=75  Identities=24%  Similarity=0.372  Sum_probs=59.4

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|+++ +..+............++     .|.|.+++.+|+|.|+|.|.|..|.....+.|.
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~-g~~i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   74 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSIN-GAPIEGTDPDPRRHVSSG-----ALILTDVQPSDTAVYQCEARNRHGNLLANAHVH   74 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEEC-CEECCCCCCCceEEeeCC-----EEEECCCChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            78999999999999999999996 443332221111122334     899999999999999999999999999988887


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        75 V   75 (76)
T cd05867          75 V   75 (76)
T ss_pred             E
Confidence            6

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.66  E-value=5.7e-16  Score=96.55  Aligned_cols=66  Identities=20%  Similarity=0.306  Sum_probs=54.2

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +.|.|.+.|.|.|.+.|+|++ ..+...       ..     .+.|.|.++..+|+|.|+|.|+|..|..++++.|+|.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg-~~l~~~-------~~-----~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~~~l~   66 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKDG-KLISGK-------HS-----QHSLQIKDVTEASAGTYTLVLWNSAAGLEKRISLELI   66 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEECC-EECccc-------CC-----cCEEEECCCCHHHCEEEEEEEEECCccEEEEEEEEEE
Confidence            479999999999999999974 433211       01     1399999999999999999999999998888888764

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.65  E-value=9.4e-16  Score=98.90  Aligned_cols=75  Identities=23%  Similarity=0.327  Sum_probs=57.7

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|++++..+.....++.+.....+   ..+|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~~~i~~~~~r~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~v   75 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNNEMLTYNTDRISLYQDNCG---RICLLIQNANKEDAGWYTVSAVNEAGVVSCNARLDV   75 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECCEECCCCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEEEEcCCCcEEEEEEEeC
Confidence            479999999999999999975433323334333222222   237999999999999999999999999999888865

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.65  E-value=1.3e-15  Score=101.04  Aligned_cols=83  Identities=19%  Similarity=0.277  Sum_probs=67.8

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ...+.+..+..|+++.|.|.+.|.|.|.+.|++++ ..+....++..   .++     .|.|.++..+|+|.|+|.|.|.
T Consensus         3 ~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g-~~~~~~~~~~~---~~~-----~L~i~~~~~~D~G~Y~C~a~N~   73 (85)
T cd05728           3 LKVISDTEADIGSSLRWECKASGNPRPAYRWLKNG-QPLASENRIEV---EAG-----DLRITKLSLSDSGMYQCVAENK   73 (85)
T ss_pred             cccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC-EECCCCCeEEE---eCC-----EEEEeeCCHHHCEEEEEEEECC
Confidence            34567788999999999999999999999999974 44433333322   333     8999999999999999999999


Q ss_pred             CCCceeEEEEEE
Q psy15734        259 LGETDGFIKVYV  270 (314)
Q Consensus       259 ~g~~~~~~~l~V  270 (314)
                      .|....++.|.|
T Consensus        74 ~G~~~~~~~l~V   85 (85)
T cd05728          74 HGTIYASAELAV   85 (85)
T ss_pred             CCeEEEEEEEEC
Confidence            999998888765

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.64  E-value=1.8e-15  Score=97.93  Aligned_cols=75  Identities=17%  Similarity=0.194  Sum_probs=59.3

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|++++ ..+...........+++     .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~g-~~i~~~~~~~~~~~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTNG-VPIEIAPTDPSRKVDGD-----TIIFSKVQERSSAVYQCNASNEYGYLLANAFVN   74 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEECC-EEccccCCCceEEecCC-----EEEECCCCHhhCEEEEEEEEcCCCEEEEEEEEE
Confidence            788999999999999999999974 43322221111122333     889999999999999999999999999999987


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        75 v   75 (76)
T cd05868          75 V   75 (76)
T ss_pred             e
Confidence            7

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.63  E-value=7.1e-15  Score=98.86  Aligned_cols=89  Identities=20%  Similarity=0.327  Sum_probs=66.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      +.+.+....+..|+++.|.|.+.|.|+ .+.|++.++..+....++..... +  ...++|.|.+++.+|+|.|+|.|.|
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~~~~~~~~~~~-~--~~~~~L~I~~v~~~D~G~Y~C~A~N   78 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLVTQQQISVVQN-D--DVRSTLTIYNANIEDAGIYKCVATD   78 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEeccCCCEEEEeC-C--CCEEEEEEecCCcccCEEEEEEEEc
Confidence            345566678999999999999999975 99999866665554444433221 1  1245999999999999999999999


Q ss_pred             CCC-CceeEEEEEE
Q psy15734        258 ALG-ETDGFIKVYV  270 (314)
Q Consensus       258 ~~g-~~~~~~~l~V  270 (314)
                      ..| ....++.|.|
T Consensus        79 ~~g~~~~~sv~l~~   92 (92)
T cd04977          79 AKGTESEATVNLKI   92 (92)
T ss_pred             CCCCcceeEEEEEC
Confidence            965 4567777654

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.63  E-value=4.3e-15  Score=99.91  Aligned_cols=86  Identities=19%  Similarity=0.216  Sum_probs=68.3

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .|....+.+|+++.|.|.+.|.|.|.+.|++++. .+....++......+.   .++|.|.++..+|+|.|+|.|.|..|
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~-~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G   82 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQ-DIELSEHYSVKLEQGK---YASLTIKGVTSEDSGKYSINVKNKYG   82 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCE-ECCCCCCEEEEEcCCC---EEEEEECCCChhhCEEEEEEEEeCCC
Confidence            4556788999999999999999999999999754 3434444443332222   24799999999999999999999999


Q ss_pred             CceeEEEEEE
Q psy15734        261 ETDGFIKVYV  270 (314)
Q Consensus       261 ~~~~~~~l~V  270 (314)
                      .+..++.|+|
T Consensus        83 ~~~~~~~v~~   92 (92)
T cd05891          83 GETVDVTVSV   92 (92)
T ss_pred             ceeeEEEEEC
Confidence            9999988865

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.62  E-value=3.4e-15  Score=97.08  Aligned_cols=75  Identities=24%  Similarity=0.268  Sum_probs=59.7

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|++++ ..+............++     .|.|.+++.+|+|.|+|.|.|..|...+++.|.
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g-~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~   74 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNG-VPIEELPPDPRRRVDGG-----TLILSNVQPNDTAVYQCNASNVHGYLLANAFVH   74 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECC-EECCCCCCcceEEccCC-----EEEECCCChhhCEEEEEEEEccCCeEEEeEEEE
Confidence            789999999999999999999964 43333222111222333     899999999999999999999999999999887


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        75 V   75 (76)
T cd04978          75 V   75 (76)
T ss_pred             E
Confidence            7

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.62  E-value=4.1e-15  Score=96.00  Aligned_cols=74  Identities=19%  Similarity=0.255  Sum_probs=58.9

Q ss_pred             cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      .+.|.|.+.|.|.|.+.|++++ ..+....++.+.....    .+.|.|.++..+|+|.|+|.|.|..|.++.++.|.|
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g-~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V   74 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDG-KPLKLSGRVQIETTAS----STSLVIKNAERSDSGKYTLTLKNPAGEKSATINVKV   74 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECC-EEcCCCCeEEEEECCC----eEEEEECCCCcCcCEEEEEEEECCCccEEEEEEEEC
Confidence            4789999999999999999974 4443444444332222    358999999999999999999999999999988865

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.62  E-value=8.5e-15  Score=99.97  Aligned_cols=93  Identities=20%  Similarity=0.312  Sum_probs=69.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCC-CeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQ-FGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d-~G~Y  251 (314)
                      ||.|.. +....+.+|+++.|.|.+.|.|.| .+.|++++..+... ..++.+......+...++|.|.++..+| .|.|
T Consensus         2 pp~i~~-~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~~~i~~~~~~r~~i~~~~~~~~~~s~L~I~~v~~~d~~G~Y   80 (98)
T cd05758           2 PPIITS-EATQYAILGDKGRVECFIFSTPPPDRIVWTWKENELESGSSGRYTVETDPSPGGVLSTLTISNTQESDFQTSY   80 (98)
T ss_pred             CCeEcC-CCcEEEeCCCcEEEEEEEcccCCCCEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEECCccccccceeE
Confidence            566654 445678999999999999999999 59999975433222 2345444322223345689999999955 8999


Q ss_pred             EEEEeeCCCCceeEEEE
Q psy15734        252 RCVAVNALGETDGFIKV  268 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l  268 (314)
                      +|.|.|..|.+...+.|
T Consensus        81 ~C~A~N~~G~~~~~~~L   97 (98)
T cd05758          81 NCTAWNSFGSGTAIISL   97 (98)
T ss_pred             EEEEEcCCCcccEEEEe
Confidence            99999999999888876

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.62  E-value=4.4e-15  Score=94.81  Aligned_cols=71  Identities=20%  Similarity=0.465  Sum_probs=57.4

Q ss_pred             cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      ++.|.|.+.|.|.|.+.|++++. .+....++.+  ..++     .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~-~~~~~~~~~~--~~~~-----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~L~V   71 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGD-MVIPSDYFKI--VKEH-----NLQVLGLVKSDEGFYQCIAENDVGNVQASAQLII   71 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCe-ECCCCCCEEE--EecC-----CEEEEcCCcccCEEEEEEEEcCCCEEEEEEEEEC
Confidence            47899999999999999999754 3434444332  2333     7888999999999999999999999999988865

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.61  E-value=1.1e-14  Score=100.30  Aligned_cols=95  Identities=21%  Similarity=0.222  Sum_probs=67.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC---CceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG---DDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++. .+...   .........++......+.+.++..+|+|.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~-~l~~~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~D~G~Y   79 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNGQ-PLETDKDDPRSHRIVLPSGSLFFLRVVHGRKGRSDEGVY   79 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECCE-ECccccCCCCcceEEecCCcEEEEEeeccCCCcCcCEEE
Confidence            6788888888999999999999999999999999999743 33221   1111122233311111222234478999999


Q ss_pred             EEEEeeCCCC-ceeEEEEEE
Q psy15734        252 RCVAVNALGE-TDGFIKVYV  270 (314)
Q Consensus       252 ~C~a~n~~g~-~~~~~~l~V  270 (314)
                      +|.|.|..|. .++.+.|.|
T Consensus        80 ~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          80 VCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             EEEEEccccceecceEEEEe
Confidence            9999999998 577777766

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.61  E-value=6.1e-15  Score=94.90  Aligned_cols=74  Identities=20%  Similarity=0.253  Sum_probs=55.5

Q ss_pred             EEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       195 l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |.|.+.|+|.|++.|+++ +..+........... .......+.|.|.++..+|+|.|+|.|.|..|.+.+++.+.
T Consensus         3 i~~~v~G~P~Pti~W~kn-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   77 (79)
T cd05855           3 IPFTVKGNPKPTLQWFHE-GAILNESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEKNVSAH   77 (79)
T ss_pred             EEEEEeEeCCCceEEEEC-CEECCCCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccceEEEee
Confidence            789999999999999997 444444433222111 11112345899999999999999999999999999988764

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.61  E-value=5.2e-15  Score=98.43  Aligned_cols=82  Identities=20%  Similarity=0.352  Sum_probs=62.8

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+.+|+.+.|.|.+.|.|.|.+.|++++ ..+....+........   ....|.|.++..+|+|.|+|.|.|..|...+
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g-~~l~~~~~~~~~~~~~---~~~~l~i~~~~~~D~G~Y~C~a~N~~G~~~~   79 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNG-KEFKQEHRIGGYKVRN---QHWSLIMESVVPSDKGNYTCVVENEYGSINH   79 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECC-EECCCCCceeeeEEeC---CceEEEEccCCcccCEEEEEEEEeCCCEEEE
Confidence            45788999999999999999999999974 4333332221111111   1237999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15734        265 FIKVYV  270 (314)
Q Consensus       265 ~~~l~V  270 (314)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05857          80 TYHLDV   85 (85)
T ss_pred             EEEEEC
Confidence            988865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.61  E-value=5.1e-15  Score=95.21  Aligned_cols=73  Identities=21%  Similarity=0.403  Sum_probs=60.3

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|++++ ..+....++.  ...++     .|.|.++..+|+|.|+|.|.|..|....++.|.
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~-~~~~~~~~~~--~~~~~-----~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~   72 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGT-ELLTNSSRIC--IWPDG-----SLEILNVTKSDEGKYTCFAENFFGKANSTGSLS   72 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECC-EEcccCCCEE--ECCCC-----eEEEccCChhHCEEEEEEEECCCCceEEEEEEE
Confidence            688999999999999999999974 4443333333  23344     899999999999999999999999999998886


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        73 V   73 (73)
T cd04969          73 V   73 (73)
T ss_pred             C
Confidence            5

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.61  E-value=6.7e-15  Score=95.06  Aligned_cols=74  Identities=27%  Similarity=0.452  Sum_probs=60.6

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|+++++..+....+..  ...++     .|.|.++..+|+|.|+|.|.|..|..+..+.|+
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~   73 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLISNSSRTL--VYDNG-----TLDILITTVKDTGSFTCIASNAAGEATATVELH   73 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEecCCCeEE--EecCC-----EEEEEECChhhCEEEEEEEECCCCeEEEEEEEE
Confidence            78999999999999999999986666554433322  23344     899999999999999999999999998888876


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        74 v   74 (74)
T cd05764          74 I   74 (74)
T ss_pred             C
Confidence            5

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.61  E-value=9e-15  Score=98.19  Aligned_cols=79  Identities=22%  Similarity=0.340  Sum_probs=62.4

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeec-----CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      |+++.|.|.+.|.|.|.+.|++++...+..     ....+.....++     .|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~~~~~~~~r~~v~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSYQPPQSSSRFSVSQTG-----DLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecccCCCCCCeEEECCCC-----eEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            789999999999999999999976543221     011122222333     8999999999999999999999999999


Q ss_pred             EEEEEEEec
Q psy15734        265 FIKVYVNLV  273 (314)
Q Consensus       265 ~~~l~V~~~  273 (314)
                      .+.|.|...
T Consensus        76 ~~~l~V~~~   84 (90)
T cd05726          76 KAYLEVTDV   84 (90)
T ss_pred             EEEEEEeec
Confidence            999999864

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.60  E-value=1.4e-14  Score=95.80  Aligned_cols=81  Identities=16%  Similarity=0.248  Sum_probs=60.1

Q ss_pred             ccEEEEEEEeecCCc--eeEEecCCCeeeecC--CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        191 QTVELHCHTEAFPAS--LNYWTNEKGDMIITG--DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~--~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      +++.|.|.+.|+|.|  .+.|++++..+....  .++......   ...++|.|.+++.+|+|.|+|.|.|..|...+++
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~g~~i~~~~~~~~~~~~~~~---~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~~~~   77 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLDDFPIDLDKPNGHYRRMEVK---ETIGDLVIVNAQLSHAGTYTCTAQTVVDSASASA   77 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEccccCCCCcEEEEEec---ceEeEEEEccCChhhCeEEEEEEecCCCCEEEEE
Confidence            468999999999987  578999743332221  122111111   1124999999999999999999999999999999


Q ss_pred             EEEEEecC
Q psy15734        267 KVYVNLVD  274 (314)
Q Consensus       267 ~l~V~~~~  274 (314)
                      .|.|..+|
T Consensus        78 ~L~V~~~P   85 (85)
T cd05854          78 TLVVRGPP   85 (85)
T ss_pred             EEEEECCC
Confidence            99998654

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.60  E-value=8.7e-15  Score=98.12  Aligned_cols=81  Identities=22%  Similarity=0.330  Sum_probs=58.1

Q ss_pred             CccEEEEEEEeecCCceeEEecCC---CeeeecCC-ce-eeeEe--eCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEK---GDMIITGD-DY-EDSRL--ING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~---~~~~~~~~-~~-~~~~~--~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |+++.|.|.+.|.|.|.+.|++++   +..+.... .. .....  ... ......|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGPDGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLAGNSIGP   80 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCCCCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEeecccCc
Confidence            678999999999999999999963   22211111 11 11110  000 011238999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy15734        262 TDGFIKVYV  270 (314)
Q Consensus       262 ~~~~~~l~V  270 (314)
                      ..+++.|.|
T Consensus        81 ~~~sa~L~V   89 (90)
T cd04974          81 SHHSAWLTV   89 (90)
T ss_pred             ccCCEEEEe
Confidence            999999887

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.59  E-value=7.2e-15  Score=95.10  Aligned_cols=73  Identities=18%  Similarity=0.304  Sum_probs=55.8

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|++++..........+... ..++     .|.|.+++.+|+|.|+|.|.|..|....++.|.|
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~l~V   74 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFPAARERRMHVMPEDD-----VFFIVDVKIEDTGVYSCTAQNTAGSISANATLTV   74 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCCcccccceEEecCCC-----EEEEeeCCcccCEEEEEEEEcCCCEEEeeEEEEE
Confidence            36899999999999999997543222111111211 1223     8999999999999999999999999999988877

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.59  E-value=1.5e-14  Score=97.12  Aligned_cols=81  Identities=21%  Similarity=0.226  Sum_probs=58.9

Q ss_pred             CccEEEEEEEeecCCceeEEecCC---CeeeecCCceeeeEee-CCe----eeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEK---GDMIITGDDYEDSRLI-NGY----SCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~---~~~~~~~~~~~~~~~~-~~~----~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |+++.|.|.+.|.|.|.+.|++++   +..+............ .+.    ...+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~   80 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNTTDKEMEVLYLRNVTFEDAGEYTCLAGNSIGI   80 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCceecCCceeEEEEccCCHHHCEEEEEEEEeCCCc
Confidence            789999999999999999999852   2222211111111111 100    11258999999999999999999999999


Q ss_pred             ceeEEEEEE
Q psy15734        262 TDGFIKVYV  270 (314)
Q Consensus       262 ~~~~~~l~V  270 (314)
                      ..+++.|.|
T Consensus        81 ~~~~a~L~V   89 (90)
T cd05858          81 SHHSAWLTV   89 (90)
T ss_pred             ccceEEEEE
Confidence            999999887

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=99.59  E-value=1.9e-14  Score=95.88  Aligned_cols=86  Identities=15%  Similarity=0.313  Sum_probs=65.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.|...+.+..+.+|+++.|.|.+.|.|.+.+.|++++.. +        ....++..  .   ...|.|.+++.+|+|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v~W~k~~~~-~--------~~~~~~~~--~---~~~L~I~~v~~~D~G   66 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVIRWRKILEP-M--------PATAEISM--S---GAVLKIFNIQPEDEG   66 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEEEEEECCcC-C--------CCCCEEec--C---CCEEEECcCChhhCE
Confidence            58888899999999999999999999999999999996532 1        11112221  1   127999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .|+|.+.|. |.....+.|.|
T Consensus        67 ~Y~C~A~N~~G~~~~~~~l~V   87 (88)
T cd05851          67 TYECEAENIKGKDKHQARVYV   87 (88)
T ss_pred             EEEEEEEcCCCceEEEEEEEE
Confidence            999999876 55555555554

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.59  E-value=8e-15  Score=93.61  Aligned_cols=70  Identities=26%  Similarity=0.414  Sum_probs=55.8

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|+++++... .. +.. ....++     .|.|.++..+|+|.|+|.|.|..|...+++.|.|
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~~~-~~-~~~-~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGPLS-PN-RTK-KLNNNK-----TLQLDNVLESDDGEYVCTAENSEGSARHHYTVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcCCC-CC-cee-EEcCCC-----EEEEcccCHHhCEEEEEEEEcCCCeEEEEEEEEE
Confidence            4799999999999999999865432 21 111 112333     9999999999999999999999999999988876

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>PHA02785 IL-beta-binding protein; Provisional

Probab=99.58  E-value=5.8e-14  Score=116.86  Aligned_cols=162  Identities=17%  Similarity=0.205  Sum_probs=103.3

Q ss_pred             EEecCceEEEEEEe-----cccCCCceEEEcCCCc---eeec-CCe-eC-------------------------------
Q psy15734        136 VVREGTEVTLECSA-----VGYPEPYVAWRREDGK---AINY-NGE-LV-------------------------------  174 (314)
Q Consensus       136 ~~~~g~~~~l~C~~-----~~~p~p~~~W~~~~~~---~~~~-~~~-~~-------------------------------  174 (314)
                      .+.+|+.+.|.|.+     .|+|.+.+.|++.++.   .... .+. +.                               
T Consensus        37 ~~~~ge~~~l~C~~~~~~~~g~p~~~i~W~K~g~~~~~~~~~~~g~~l~i~~~~~~DsG~Y~C~a~N~~g~~~~s~~L~V  116 (326)
T PHA02785         37 MELENEPVILPCPQINTLSSGYNILDILWEKRGADNDRIIPIDNGSNMLILNPTQSDSGIYICITKNETYCDMMSLNLTI  116 (326)
T ss_pred             hhhcCCCEEEECCCccccccCCCCceEEEEECCCccceEEEccCCceEEEcccCcccCeEEEEEEECCCcceEEEEEEEE
Confidence            34579999999997     5888899999994322   1111 111 11                               


Q ss_pred             ----CCeEEcCCCcceeecCccEEEEEE-----EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        175 ----PPMLTIPNQLEGAFVSQTVELHCH-----TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       175 ----~p~~~~~~~~~~v~~g~~~~l~C~-----~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                          ++.+...+....+.+|..+.|.|.     ..+.|+|.+.|+++. .  ....++  ....++     .|.|.+++.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~g~~~~i~C~~~~~~~~~~~~~~i~W~k~~-~--~~~~r~--~~~~~~-----~L~i~~v~~  186 (326)
T PHA02785        117 VSVSESNIDLISYPQIVNERSTGEMVCPNINAFIASNVNADIIWSGHR-R--LRNKRL--KQRTPG-----IITIEDVRK  186 (326)
T ss_pred             EecCCCccceeeccceecccCcEEEECCChhhcccCCCCceEEEccCC-c--cCCcce--EecCCC-----eEEEeecCh
Confidence                111211223345678999999997     346789999998752 2  222222  222333     899999999


Q ss_pred             CCCeEEEEEEeeCCCCcee----EEEEEEEecCCCe-eEE---EEccccccEeEEEEEeeccCC---CccceE
Q psy15734        246 HQFGSYRCVAVNALGETDG----FIKVYVNLVDGDI-FQI---RKMSRLHMGAYLCIASNGVVP---SVSHRI  307 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~----~~~l~V~~~~~~~-~~~---~~~~~~~~g~~~C~a~~~~~~---~~~w~v  307 (314)
                      +|.|.|+|.|.|..|....    .+.|.|..+..++ +..   ..+..++...+.|.|.+.|++   .+.|..
T Consensus       187 ~d~G~Y~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~~~~~~~G~~v~L~C~a~g~P~~~~~~v~W~k  259 (326)
T PHA02785        187 NDAGYYTCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPEGVVTSIGSNLTIACRVSLRPPTTDADVFWIS  259 (326)
T ss_pred             hhCeEEEEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCCcEEecCCCcEEEEEEEECCCCCCCceEEEEE
Confidence            9999999999999887643    3345554322222 111   122334556799999998864   788965

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.58  E-value=1.3e-14  Score=94.74  Aligned_cols=79  Identities=19%  Similarity=0.254  Sum_probs=60.1

Q ss_pred             ccEEEEEEEeec--CCceeEEecCCCeeeec--CCceeeeE--eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        191 QTVELHCHTEAF--PASLNYWTNEKGDMIIT--GDDYEDSR--LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       191 ~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~--~~~~~~~~--~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      +++.|.|.+.+.  +++.+.|++++..+...  ..++....  ..+     +.|.|.+++.+|+|+|+|.|.|..+...+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~dg~~i~~~~~~~~~~~~~~~~~~-----~~L~I~nv~~~dsG~YtC~a~n~~~~~~a   75 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSFNGHLIDFQKDGDHFERVGGQDSA-----GDLMIRSIQLKHAGKYVCMVQTSVDKLSA   75 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEECCEECcccCCCccEEEeccCCCC-----CcEEEecCCHHHCEEEEEEEEcccCceEE
Confidence            478999999874  47899999975444321  22322211  122     38999999999999999999999999999


Q ss_pred             EEEEEEEecC
Q psy15734        265 FIKVYVNLVD  274 (314)
Q Consensus       265 ~~~l~V~~~~  274 (314)
                      +..|.|..+|
T Consensus        76 ~a~L~V~~pP   85 (85)
T cd05853          76 AADLIVRGPP   85 (85)
T ss_pred             EEEEEEecCC
Confidence            9999998764

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.58  E-value=2.4e-14  Score=93.38  Aligned_cols=75  Identities=17%  Similarity=0.193  Sum_probs=56.3

Q ss_pred             EEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC---CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN---GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       194 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      .|.|.+.|.|.|.+.|+++ +..+.............   .....+.|.|.++..+|+|.|+|.|.|..|.+.+++.|.
T Consensus         2 ~i~~~v~G~P~P~v~W~k~-g~~i~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~~~~~~~~   79 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHN-GAVLNESDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQDSKSISAH   79 (81)
T ss_pred             eEEEEeEeeCCCcEEEEEC-CEECcCCCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCeeeEEEee
Confidence            3789999999999999996 44444443332221111   122345899999999999999999999999999988764

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.58  E-value=1.5e-14  Score=94.29  Aligned_cols=76  Identities=24%  Similarity=0.350  Sum_probs=57.9

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+++.|.|.+.|.|.|.+.|+++++. +....++.+....    ..+.|.|.++..+|+|.|+|.|.|..|.......+.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~-~~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~~~   75 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGH-VPDSARVSITSEG----GYGTLTIRDVKESDQGAYTCEAINTRGMVFGIPDGI   75 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeE-CCCCCCEEEEECC----CEEEEEECCCChHHCEEEEEEEEecCCEEEecccEE
Confidence            78999999999999999999997443 3333344332211    124899999999999999999999999886655544


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      +
T Consensus        76 ~   76 (78)
T cd05743          76 L   76 (78)
T ss_pred             E
Confidence            3

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.58  E-value=1.8e-14  Score=96.83  Aligned_cols=86  Identities=21%  Similarity=0.344  Sum_probs=62.5

Q ss_pred             CCeEEcCCCcceeecC---ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeE
Q psy15734        175 PPMLTIPNQLEGAFVS---QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGS  250 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~  250 (314)
                      .|.|...|....+.++   ..+.|.|.+.|.|.|.+.|++++..+.....++.   ..++     .|.|.++. .+|+|.
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~~i~~~~~~~~---~~~g-----~L~I~~~~~~~D~G~   72 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNLDIDLTNDRYS---MVGG-----NLVINNPDKYKDAGR   72 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCEEccCCCCeEE---EECC-----EEEECcCCcCCCCEE
Confidence            3666666666655544   4899999999999999999997554322233332   2344     89999885 689999


Q ss_pred             EEEEEeeCCCCce-eEEEE
Q psy15734        251 YRCVAVNALGETD-GFIKV  268 (314)
Q Consensus       251 Y~C~a~n~~g~~~-~~~~l  268 (314)
                      |+|.|.|..|... +.+.|
T Consensus        73 Y~C~A~N~~G~~~s~~a~l   91 (93)
T cd05849          73 YVCIVSNIYGKVRSREATL   91 (93)
T ss_pred             EEEEEEeCcceEEEccEEE
Confidence            9999999999774 34444

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.57  E-value=1.1e-14  Score=92.73  Aligned_cols=70  Identities=19%  Similarity=0.345  Sum_probs=56.0

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +.|.|.+.|.|+|.+.|+++ +..+....++   .....     +|.|.++..+|+|.|+|.|.|..|...+++.+.|.
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~~~~~---~~~~~-----~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~~~~~   70 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKN-GKLISEKNRT---KKSGH-----SLTIKDVTEEDAGNYTVVLTNKQAKLEKRLTFTLV   70 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEEC-CEECCCCCEE---EcCCC-----EEEECcCCHHHCEEEEEEEEcCCccEEEEEEEEEE
Confidence            46999999999999999996 4444433222   12223     89999999999999999999999998888887764

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.57  E-value=1.5e-14  Score=93.91  Aligned_cols=71  Identities=27%  Similarity=0.455  Sum_probs=53.0

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce--eEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD--GFIKVY  269 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~  269 (314)
                      ++|.|.+.|.|.|.+.|++++. .+.... .+.+ ....+     .|.|.++..+|+|.|+|.|.|..|...  ..+.|.
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g~-~l~~~~~~~~~-~~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~~~l~   73 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDGT-PLSDGQGNYSV-SSKER-----TLTLRSAGPDDSGLYYCCAHNAFGSVCSSQNFTLS   73 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECCE-ECCCCCccEEE-eCCCC-----EEEEeeCCcccCEEEEEEEEeCCCeEeeCceEEEE
Confidence            5799999999999999999744 333322 2222 11222     899999999999999999999999874  455555


Q ss_pred             E
Q psy15734        270 V  270 (314)
Q Consensus       270 V  270 (314)
                      |
T Consensus        74 v   74 (77)
T cd05760          74 I   74 (77)
T ss_pred             E
Confidence            5

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.57  E-value=1.4e-14  Score=92.06  Aligned_cols=69  Identities=30%  Similarity=0.527  Sum_probs=55.8

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|+|.+.|+++++..  ...++..  ..++     .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~--~~~~~~~--~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   69 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGEL--PKGRAEI--LDDK-----SLKIRNVTAGDEGSYTCEAENMVGKIEASASLTV   69 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCccC--CCCcEEE--eeCC-----EEEECcCChhHCEEEEEEEEcCCCcEEEEEEEEC
Confidence            479999999999999999985433  2223322  2333     8999999999999999999999999998888765

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.57  E-value=4e-14  Score=95.55  Aligned_cols=86  Identities=26%  Similarity=0.353  Sum_probs=61.8

Q ss_pred             CeEEcCCCcceee---cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734        176 PMLTIPNQLEGAF---VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY  251 (314)
Q Consensus       176 p~~~~~~~~~~v~---~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y  251 (314)
                      |.|...+.+..+.   .|+.+.|.|.+.|.|.|.+.|++++ ..+......... ..++     .|.|.++. .+|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g-~~l~~~~~~~~~-~~~g-----~L~i~~~~~~~D~G~Y   74 (94)
T cd05848           2 PVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNG-TEIDTESDYRYS-LIDG-----NLIISNPSEVKDSGRY   74 (94)
T ss_pred             CeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECC-eECccCCCceEE-eeCC-----eEEEccCCccCcCEEE
Confidence            5566666665443   4789999999999999999999974 444333333222 2334     88998875 6999999


Q ss_pred             EEEEeeCCCCce-eEEEE
Q psy15734        252 RCVAVNALGETD-GFIKV  268 (314)
Q Consensus       252 ~C~a~n~~g~~~-~~~~l  268 (314)
                      +|.|.|..|... +.+.|
T Consensus        75 ~C~A~N~~G~~~S~~~~l   92 (94)
T cd05848          75 QCLATNSIGSILSREALL   92 (94)
T ss_pred             EEEEEcCCCeEEeccEEE
Confidence            999999999773 34443

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=99.56  E-value=6.9e-14  Score=93.83  Aligned_cols=93  Identities=22%  Similarity=0.398  Sum_probs=71.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCC-CeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQ-FGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d-~G~Y  251 (314)
                      ||.| .......+.+|+++.|.|.+.+.|+| .+.|.+.+..+... ..++.+..........++|.|.++..+| .|.|
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~~i~~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~d~~g~Y   80 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKENVLESGTSERYTVERTSTGSGVLSTLTINNIMEADFQTHY   80 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccccccCCCCCCEEEEEEccCCCcEEEEEECCCccccCCcEE
Confidence            5666 55667788999999999999998887 45687764433222 3566665544444567899999998877 7899


Q ss_pred             EEEEeeCCCCceeEEEE
Q psy15734        252 RCVAVNALGETDGFIKV  268 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l  268 (314)
                      .|.|.|.+|.+...+.|
T Consensus        81 ~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          81 NCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             EEEEEeCCccceEEEEe
Confidence            99999999999998876

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.56  E-value=7.2e-14  Score=94.35  Aligned_cols=86  Identities=21%  Similarity=0.293  Sum_probs=62.0

Q ss_pred             CeEEcCCCcceeecC---ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734        176 PMLTIPNQLEGAFVS---QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY  251 (314)
Q Consensus       176 p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y  251 (314)
                      |.|...|....+.+|   +++.|.|.+.|.|.|.+.|++++ ..+.......... .++     .|.|.++. .+|+|.|
T Consensus         2 P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g-~~l~~~~~~~~~~-~~g-----~L~I~~~~~~~D~G~Y   74 (94)
T cd05850           2 PVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNG-TEIKFAPESRYTL-VAG-----NLVINNPQKARDAGSY   74 (94)
T ss_pred             CeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECC-EECccCCCceEEE-ECC-----eEEEccCCccCcCEEE
Confidence            566667777766555   68999999999999999999974 4333222222222 234     89998865 5999999


Q ss_pred             EEEEeeCCCCce-eEEEE
Q psy15734        252 RCVAVNALGETD-GFIKV  268 (314)
Q Consensus       252 ~C~a~n~~g~~~-~~~~l  268 (314)
                      +|.|.|..|... +.+.|
T Consensus        75 ~C~A~N~~G~~~s~~a~l   92 (94)
T cd05850          75 QCLAINRCGTVVSREANL   92 (94)
T ss_pred             EEEEEcCcCcEEEEEEEE
Confidence            999999999774 35444

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.56  E-value=2.9e-14  Score=94.63  Aligned_cols=79  Identities=20%  Similarity=0.303  Sum_probs=59.5

Q ss_pred             ccEEEEEEEeecCCc--eeEEecCCCeeeecCC--ceeee--EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        191 QTVELHCHTEAFPAS--LNYWTNEKGDMIITGD--DYEDS--RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~--~~~~~--~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      +++.|.|.+.|.|.|  .+.|++++..+.....  .+...  ....     +.|.|.+++.+|+|.|+|.|.|..|...+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~g~~i~~~~~~~~~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~   75 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFNGVPIDFDKDGGHYRRVGGKDSN-----GDLMIRNAQLKHAGKYTCTAQTVVDSLSA   75 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEECCeEeeccCCCccEEEEeccccc-----ceEEEccCCHHhCeeeEEEEecCCCcEEE
Confidence            478999999999988  5689997443322221  11111  1122     38999999999999999999999999999


Q ss_pred             EEEEEEEecC
Q psy15734        265 FIKVYVNLVD  274 (314)
Q Consensus       265 ~~~l~V~~~~  274 (314)
                      ++.|.|..+|
T Consensus        76 ~~~l~V~~pP   85 (85)
T cd04970          76 SADLIVRGPP   85 (85)
T ss_pred             EEEEEEECCC
Confidence            9999998754

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.56  E-value=3.5e-14  Score=94.71  Aligned_cols=82  Identities=20%  Similarity=0.357  Sum_probs=62.5

Q ss_pred             CCCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        181 PNQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+....+.+|+++.|.|.+ .|.|.|.+.|++++..+.....++..  ..++     .|.|.++..+|+|.|+|.|.|..
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g~~~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~   74 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDGQPLNLDNERVRI--VDDG-----NLLIAEARKSDEGTYKCVATNMV   74 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECCEECCCCCCCEEE--ccCC-----EEEEeECCcccCEEEEEEEEecc
Confidence            3556678899999999998 79999999999975433332333322  2233     89999999999999999999999


Q ss_pred             CCc-eeEEEEE
Q psy15734        260 GET-DGFIKVY  269 (314)
Q Consensus       260 g~~-~~~~~l~  269 (314)
                      |.. +..+.|.
T Consensus        75 G~~~s~~~~l~   85 (86)
T cd05724          75 GERESAAARLS   85 (86)
T ss_pred             CceeeeeEEEE
Confidence            976 4455554

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.56  E-value=1.7e-14  Score=91.09  Aligned_cols=69  Identities=14%  Similarity=0.296  Sum_probs=54.0

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +.|.|.+.|.|.|.+.|++++ ..+....++    ..+     ..|.|.++..+|+|.|+|.|.|..|..+...++.+.
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g-~~l~~~~~~----~~~-----~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t~~l~   69 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNG-QLIVLNHTF----KRG-----VHLTIYEVTEKDAGNYTVVLTNPITKEEQRHTFQLV   69 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECC-EECCCCCEE----ccC-----CEEEECcCCHHHCEEEEEEEEECCCceeeEEEEEEE
Confidence            468999999999999999974 444332211    122     289999999999999999999999988777766654

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.56  E-value=1.5e-14  Score=91.87  Aligned_cols=68  Identities=24%  Similarity=0.452  Sum_probs=55.2

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      +.|.|.+.|.|.|.+.|+++ +..+....++.+  ..++     .|.|.++..+|+|.|+|.|.|..|..+.++.|
T Consensus         1 v~L~C~~~g~P~p~i~W~k~-g~~~~~~~~~~~--~~~~-----~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~L   68 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKD-GVQVTESGKFHI--SPEG-----YLAIRDVGVADQGRYECVARNTIGYASVSMVL   68 (69)
T ss_pred             CEeEecceEeCCCEEEEEEC-CEECCCCCCEEE--CCCC-----EEEECcCChhhCEEEEEEEECCCCcEEEEEEe
Confidence            47999999999999999996 444444444332  2333     89999999999999999999999999888776

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.55  E-value=6e-14  Score=93.87  Aligned_cols=86  Identities=22%  Similarity=0.344  Sum_probs=64.4

Q ss_pred             CeEEc--CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        176 PMLTI--PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       176 p~~~~--~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      |.|..  .+....+.+|+++.|.|.+.|. .|.+.|++++ ..+. ..++.+. ..++     +|.|.+++.+|+|.|+|
T Consensus         2 p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng-~~l~-~~~~~~~-~~~~-----~L~I~~v~~~D~G~Y~C   72 (91)
T cd05740           2 PVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNG-SLLV-PPRLQLS-NDNR-----TLTFNNVTRSDTGHYQC   72 (91)
T ss_pred             CEeecccccCccccccCCcEEEEEEeCCC-CCEEEEEECC-EECC-CCCEEEe-CCCC-----EEEECcCChhhCEEEEE
Confidence            45532  3456688999999999999999 9999999974 3332 2232221 1223     89999999999999999


Q ss_pred             EEeeCCCCc-eeEEEEEE
Q psy15734        254 VAVNALGET-DGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~-~~~~~l~V  270 (314)
                      .|.|..|.. +..+.|.|
T Consensus        73 ~a~N~~G~~~S~~~~L~V   90 (91)
T cd05740          73 EASNEVSNMTSDPYILNV   90 (91)
T ss_pred             EEEcCCCCEEeeeEEEEe
Confidence            999999976 45677765

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.55  E-value=5e-14  Score=95.64  Aligned_cols=86  Identities=27%  Similarity=0.327  Sum_probs=62.8

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec-----CCCCCeEEEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI-----LSHQFGSYRC  253 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-----~~~d~G~Y~C  253 (314)
                      ...|....+.+|+++.|.|.+.|.|.|.+.|++++ ..+............++     .|.|.++     ..+|+|.|+|
T Consensus         3 ~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g-~~l~~~~~~~~~~~~~~-----~l~i~~v~~~~~~~~D~G~Y~C   76 (95)
T cd05722           3 LSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDG-VLLNLVSDERRQQLPNG-----SLLITSVVHSKHNKPDEGFYQC   76 (95)
T ss_pred             EECCCCeEEcCCCCEEEeeecccCCCCEEEEEECC-eECccccCcceEEccCC-----eEEEeeeeccCCCCCcCEEEEE
Confidence            34556677889999999999999999999999974 43433222222223344     5667665     6899999999


Q ss_pred             EEeeC-CCCc-eeEEEEEE
Q psy15734        254 VAVNA-LGET-DGFIKVYV  270 (314)
Q Consensus       254 ~a~n~-~g~~-~~~~~l~V  270 (314)
                      .|.|. .|.. ++.+.|.|
T Consensus        77 ~a~N~~~G~~~s~~~~l~v   95 (95)
T cd05722          77 VAQNDSLGSIVSRTARLTV   95 (95)
T ss_pred             EEECCccCcEEEeeeEEeC
Confidence            99999 9877 55666654

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=99.55  E-value=1.4e-13  Score=92.84  Aligned_cols=86  Identities=20%  Similarity=0.268  Sum_probs=66.3

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|+.+++...+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.++.+.... ..+.|.|.+++.+|+
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v~W~k~g-~~l--------~~~~~~~~~~~~-~~~~L~i~~~~~~D~   71 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTVTWMREG-QII--------VSSQRHQITSTE-YKSTFEISKVQMSDE   71 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEEEEEECC-EEC--------CCCCcEEEEEcC-CeeEEEECCCCcccC
Confidence            4688999999999999999999999999999999999954 322        223345444332 234899999999999


Q ss_pred             eEEEEEEecC-CCccee
Q psy15734        100 GWYMCQINTV-PMTSQK  115 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~  115 (314)
                      |.|+|.+.|. |.....
T Consensus        72 G~Y~C~a~N~~G~~~~~   88 (92)
T cd05747          72 GNYTVVVENSEGKQEAQ   88 (92)
T ss_pred             EeEEEEEEcCCCCEeEE
Confidence            9999999875 433333

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.54  E-value=1.8e-13  Score=91.97  Aligned_cols=91  Identities=22%  Similarity=0.418  Sum_probs=67.3

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ..++.+.+|+++.|.|.+.+.+.+.+.|++.+...+ ..+......+.|+.+.......+.|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~-~~~~~~~~~~~r~~~~~~~~~~~~L~I~nV~~~D~G~YtC~~~   82 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTL-YFGEKRALRDNRIQLVKSTPTELIISISNVQLSDEGEYTCSIF   82 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEE-EeCCeEEEeCCeEEEEeCCCceEEEEECCCCcccCEEEEEEEE
Confidence            356889999999999999998889999999665432 2222233455677765555556799999999999999999997


Q ss_pred             cCCCcceeEEEE
Q psy15734        108 TVPMTSQKGYLQ  119 (314)
Q Consensus       108 ~~~~~~~~~~l~  119 (314)
                      .....++.+.|.
T Consensus        83 t~~~~~~~~~~~   94 (95)
T cd05882          83 TMPVRTAKATVT   94 (95)
T ss_pred             eeccccEEEEEE
Confidence            644455555444

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=99.54  E-value=8.7e-14  Score=93.67  Aligned_cols=88  Identities=24%  Similarity=0.378  Sum_probs=68.6

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.|...+..+.+.+|+++.|.|.+.+.|.+.+.|+++ +..+        ..+.++.+.... ....|.|.+++.+|+|.
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v~W~~~-~~~l--------~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~   70 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTVTWYKN-GRPL--------TSSQRYQIESDG-GSSSLTIKNVTREDAGT   70 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEEEEEET-TEEE--------ESSSSEEEEEET-TEEEEEESSESGGGSEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCccccccc-ccce--------eeeeeeeeeccc-ceeEEccCCCChhhCEE
Confidence            6788889999999999999999999988899999996 4433        235566655544 44589999999999999


Q ss_pred             EEEEEecC-CCcceeEEEE
Q psy15734        102 YMCQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~  119 (314)
                      |+|.+.+. +.....+.|.
T Consensus        71 Y~C~~~n~~g~~~~~~~l~   89 (90)
T PF07679_consen   71 YTCVASNSSGEATASVNLT   89 (90)
T ss_dssp             EEEEEEETTEEEEEEEEEE
T ss_pred             EEEEEEECCCEEEEEEEEE
Confidence            99999775 3334444444

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.54  E-value=3.5e-14  Score=93.83  Aligned_cols=79  Identities=25%  Similarity=0.364  Sum_probs=61.2

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+..|+++.|.|.+.|.|.|.+.|++++...... ..... .     .....|.|.++..+|+|.|+|.|.|..|....
T Consensus         4 ~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~~~~~-~~~~~-~-----~~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   76 (82)
T cd05856           4 IARPVGSSVRLKCVASGNPRPDITWLKDNKPLTPT-EIGES-R-----KKKWTLSLKNLKPEDSGKYTCHVSNRAGEINA   76 (82)
T ss_pred             eeccCCCeEEEEEEeeEeCCCcEEEEECCcCCcCC-cccee-c-----CceEEEEEccCChhhCEEEEEEEEcCCccEEE
Confidence            34678999999999999999999999975443222 11110 0     11248999999999999999999999999888


Q ss_pred             EEEEEE
Q psy15734        265 FIKVYV  270 (314)
Q Consensus       265 ~~~l~V  270 (314)
                      ++.|.|
T Consensus        77 ~~~v~v   82 (82)
T cd05856          77 TYKVDV   82 (82)
T ss_pred             EEEEeC
Confidence            887764

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.54  E-value=4.8e-14  Score=90.78  Aligned_cols=72  Identities=24%  Similarity=0.370  Sum_probs=54.6

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  270 (314)
                      ++|.|.+.|.|.|.+.|++++. .+......+.....++     .|.|.+++.+|+|.|+|.|.|..|.. +..+.|.|
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~~-~~~~~~~~~~~~~~~g-----~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a~l~v   73 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDFL-PVDTTSNGRIKQLRSG-----ALQIENSEESDQGKYECVATNSAGTRYSAPANLYV   73 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECCE-ECccCCCCCEEEcCCc-----EEEECCCChhhCEEEEEEEECCCCceEcccEEEEE
Confidence            4799999999999999999743 3332122223333444     89999999999999999999999985 66777765

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.54  E-value=3.1e-14  Score=95.77  Aligned_cols=81  Identities=17%  Similarity=0.143  Sum_probs=62.8

Q ss_pred             cceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        184 LEGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...+.+|+.+.|.|.+.+     .|.|.+.|++++....... ...++.. .++     .|.|.++..+|+|.|+|.+.|
T Consensus         8 ~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~~~~~~r~~~-~~~-----~L~I~~~~~~DsG~Y~C~~~N   81 (94)
T cd05756           8 KSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIPTEERSRMHQ-QKD-----LLWFLPAALEDSGLYTCVVRN   81 (94)
T ss_pred             EEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCcccccccceeee-cCC-----eEEEccCCcccCeEEEEEEcC
Confidence            446789999999999999     6899999999864432211 1122221 233     899999999999999999999


Q ss_pred             CCCCceeEEEEEE
Q psy15734        258 ALGETDGFIKVYV  270 (314)
Q Consensus       258 ~~g~~~~~~~l~V  270 (314)
                      ..|.....+.|.|
T Consensus        82 ~~g~~~~~~~L~v   94 (94)
T cd05756          82 STYCMKVSISLTV   94 (94)
T ss_pred             CCccEEEEEEEEC
Confidence            9999999888765

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.54  E-value=6.8e-14  Score=92.64  Aligned_cols=81  Identities=19%  Similarity=0.166  Sum_probs=58.7

Q ss_pred             CccEEEEEEEeec--CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        190 SQTVELHCHTEAF--PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       190 g~~~~l~C~~~g~--p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      |+++.|.|.+.+.  |.|.+.|.+++......................++|.|.+++.+|+|.|+|.|.|..|...++..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~~~s~~   80 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKSMVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQKESTK   80 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceEeecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCceEEEEE
Confidence            7899999999999  88999999865432111000000011111234569999999999999999999999999988888


Q ss_pred             EEE
Q psy15734        268 VYV  270 (314)
Q Consensus       268 l~V  270 (314)
                      |.|
T Consensus        81 v~v   83 (84)
T cd05742          81 VNI   83 (84)
T ss_pred             EEE
Confidence            766

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.53  E-value=2.3e-14  Score=91.83  Aligned_cols=70  Identities=33%  Similarity=0.510  Sum_probs=55.0

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+.|.|.|.+.|+++++...  ..+... ....     ..|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~~~--~~~~~~-~~~~-----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V   70 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGELP--ADRTKF-ENFN-----KTLKIDNVSEEDDGEYRCTASNSLGSARHTISVTV   70 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeECC--CCceeE-ecCC-----CEEEECCCCHHHCEEEEEEEEeCCceEEEEEEEEE
Confidence            4799999999999999999754322  111111 1112     38999999999999999999999999999988876

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.53  E-value=5e-14  Score=92.81  Aligned_cols=76  Identities=20%  Similarity=0.281  Sum_probs=57.6

Q ss_pred             CccEEEEEEEeecCCceeEEecCCC--e-eeecCCcee--eeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKG--D-MIITGDDYE--DSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~--~-~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      |+++.|.|.+.|.|.|.+.|+++..  . .......+.  .....     ...|.|.++..+|+|.|+|.|.|..|....
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   75 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRPNHVRGNVVVTN-----IGQLVIYNAQPQDAGLYTCTARNSGGLLRA   75 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecCCcccCCEEEcc-----ccEEEEccCCcccCEEEEEEEecCCceEEE
Confidence            7899999999999999999999632  1 111111111  11111     238999999999999999999999999999


Q ss_pred             EEEEEE
Q psy15734        265 FIKVYV  270 (314)
Q Consensus       265 ~~~l~V  270 (314)
                      ++.|.|
T Consensus        76 ~~~l~v   81 (81)
T cd05765          76 NFPLSV   81 (81)
T ss_pred             EEEEeC
Confidence            988865

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.53  E-value=5.9e-14  Score=88.70  Aligned_cols=68  Identities=22%  Similarity=0.454  Sum_probs=52.4

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      |+++.|.|.+.|.|.|.+.|++++.. +.....+.   ...     ..|.|.++.  |+|.|+|.|.|..|...+++.|
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~-l~~~~~~~---~~~-----~~L~i~~~~--d~G~Y~C~A~N~~G~~~~~a~l   68 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEE-LTKEDEMP---VGR-----NVLELTNIY--ESANYTCVAISSLGMIEATAQV   68 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEE-CCCcccee---cCc-----cEEEEeccc--cCeeEEEEEEeCCCEEEEEEEE
Confidence            67899999999999999999997543 33222211   112     278999874  8999999999999998887765

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=99.53  E-value=1.7e-13  Score=92.35  Aligned_cols=83  Identities=18%  Similarity=0.220  Sum_probs=60.9

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      |+.+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ....++.+.........|.|.+++.+|+|.|+|.+.
T Consensus         8 p~~v~v~~G~~v~L~C~v~G~P~p~v~W~k~g-~~l--------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~   78 (92)
T cd05737           8 PDVVTIMEGKTLNLTCTVFGDPDPEVSWLKND-QAL--------ALSDHYNVKVEQGKYASLTIKGVSSEDSGKYGIVVK   78 (92)
T ss_pred             CceEEEeCCCcEEEEEEEEecCCCeEEEEECC-EEC--------ccCCCEEEEEcCCCEEEEEEccCChhhCEEEEEEEE
Confidence            55789999999999999999999999999954 332        223344444332223479999999999999999998


Q ss_pred             cC-CCcceeEEEE
Q psy15734        108 TV-PMTSQKGYLQ  119 (314)
Q Consensus       108 ~~-~~~~~~~~l~  119 (314)
                      |. |.....+.|.
T Consensus        79 N~~G~~~~~~~v~   91 (92)
T cd05737          79 NKYGGETVDVTVS   91 (92)
T ss_pred             ECCCcceEEEEEe
Confidence            75 4444444443

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.52  E-value=8.7e-14  Score=90.78  Aligned_cols=78  Identities=18%  Similarity=0.328  Sum_probs=61.3

Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ....+.+|+.+.|.|.+.+. .+.+.|+++ +..+....++.+   .+.     .|.|.+++.+|+|.|+|.|.|..|..
T Consensus         2 ~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~-g~~l~~~~~~~~---~~~-----~L~I~~~~~~DsG~Y~C~a~n~~g~~   71 (79)
T cd04973           2 ESYSAHPGDLLQLRCRLRDD-VQSINWTKD-GVQLGENNRTRI---TGE-----EVQIKDAVPRDSGLYACVTSSPSGSD   71 (79)
T ss_pred             CcEEecCCCCEEEEEEecCC-CceEEEeeC-CcCCCCCceEEE---eCC-----EEEECCCChhhCEEEEEEEeCCCCcc
Confidence            34568899999999999996 568999997 444433334332   233     89999999999999999999999988


Q ss_pred             eeEEEEEE
Q psy15734        263 DGFIKVYV  270 (314)
Q Consensus       263 ~~~~~l~V  270 (314)
                      ...+.|.|
T Consensus        72 ~~~~~v~V   79 (79)
T cd04973          72 TTYFSVNV   79 (79)
T ss_pred             cEEEEEeC
Confidence            88877654

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.52  E-value=1e-13  Score=89.97  Aligned_cols=74  Identities=24%  Similarity=0.443  Sum_probs=58.1

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +.|.|.+.|.|+|.+.|++++. .+............++    +.|.|.++..+|.|.|+|.|.|..|.....+.|.|.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~~-~l~~~~~~~~~~~~~~----~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~   74 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNGM-DITPKLSKQLTLIANG----SELHISNVRYEDTGAYTCIAKNEAGVDEDISSLFVE   74 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECCE-ECCCCCCccEEEeCCC----CEEEECcCCcccCEEEEEEEEcCCCCcceEEEEEEE
Confidence            3689999999999999999744 3433332333333322    379999999999999999999999999999999885

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.52  E-value=7.7e-14  Score=91.20  Aligned_cols=71  Identities=28%  Similarity=0.498  Sum_probs=53.4

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-ee
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DG  264 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~  264 (314)
                      ++|.|.+.|.|.|.+.|+++++....       ...++  ....++     +|.|.++..+|+|.|+|.|.|..|.+ ++
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~~~~~~~~~~r~--~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~s~   73 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQHTHTCCLAGRI--QLLSNG-----SLLIKHVLEEDSGYYLCKVSNDVGADASK   73 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccccccccccCCCE--EEecCC-----eEEECcCCcccCEEEEEEEEeCCCCCCce
Confidence            47999999999999999997543211       11121  222333     89999999999999999999999987 66


Q ss_pred             EEEEEE
Q psy15734        265 FIKVYV  270 (314)
Q Consensus       265 ~~~l~V  270 (314)
                      .+.|+|
T Consensus        74 ~~~l~~   79 (79)
T cd05734          74 SMVLTV   79 (79)
T ss_pred             EEEEeC
Confidence            666654

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=99.51  E-value=3.2e-13  Score=92.16  Aligned_cols=96  Identities=20%  Similarity=0.331  Sum_probs=66.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.+.. +.++.+.+|++++|.|.+.+.|.+.+.|++.+.......  .....+.++.+.... ..+.|.|.+++.+|+|
T Consensus         2 ~p~i~~-~~~~~~~~G~~v~l~C~~~G~P~p~i~W~k~~~g~~~~~--~~~~~~~r~~v~~~~-~~~~L~I~~v~~~D~G   77 (98)
T cd05870           2 QPHIIQ-LKNETTVENGAATLSCKAEGEPIPEITWKRASDGHTFSE--GDKSPDGRIEVKGQH-GESSLHIKDVKLSDSG   77 (98)
T ss_pred             CCEEEe-eccEEEcCCCcEEEEEecccCCCCeEEEEECCCCceecc--CCcCcCceEEEeecC-CeeEEEEeeCCcCCCE
Confidence            466654 668899999999999999999999999999532211110  001123455554322 2347999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .|+|.+.|. |.....+.|.|
T Consensus        78 ~Y~C~A~N~~G~~~~~~~l~~   98 (98)
T cd05870          78 RYDCEAASRIGGHQKSMYLDI   98 (98)
T ss_pred             EEEEEEeccCCcceeEEEEeC
Confidence            999999776 55555555543

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.51  E-value=9.8e-14  Score=89.74  Aligned_cols=76  Identities=17%  Similarity=0.382  Sum_probs=58.5

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |.+.+.|....+.+|++++|+|.+.+.|. +.+.|++++ ..+..         .+     ..|.|.++ .+|+|.|+|.
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng-~~l~~---------~~-----~~l~i~~~-~~dsG~Y~C~   64 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNG-KLLET---------TT-----NSYRIRAA-NNDSGEYRCQ   64 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECC-EEeec---------cC-----CeEEEeec-ccCCEEeEEE
Confidence            56778888889999999999999999886 478999974 33311         11     28999999 9999999999


Q ss_pred             EeeCCCCceeEEEEE
Q psy15734        255 AVNALGETDGFIKVY  269 (314)
Q Consensus       255 a~n~~g~~~~~~~l~  269 (314)
                      |.|.  ..+..+.|.
T Consensus        65 a~~~--~~S~~v~l~   77 (78)
T cd05752          65 TQGS--SLSDPVHLE   77 (78)
T ss_pred             CCCC--cCCCCEEEe
Confidence            9886  333344443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=99.51  E-value=4.7e-13  Score=90.32  Aligned_cols=88  Identities=17%  Similarity=0.310  Sum_probs=62.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..|....+.+|+++.|.|.+.+.|. +.+.|++.++..+..       .+.++.+..++...++|.|.+++.+|+|.|+|
T Consensus         5 ~~p~~~~v~~G~~v~l~C~v~G~P~~p~i~W~~~~g~~l~~-------~~~r~~v~~~~~~~~~L~I~~v~~~D~G~YtC   77 (96)
T cd05865           5 IVPSQGEISVGESKFFLCQVAGEAKDKDISWFSPNGEKLTP-------NQQRISVVRNDDYSSTLTIYNANIDDAGIYKC   77 (96)
T ss_pred             EeCCccEECCCCeEEEEEEEeCCCCCCEEEEECCCCcCccc-------cCCeEEEEeCCCCceEEEEeccChhhCEEEEE
Confidence            3455667999999999999999884 799999855543321       12344444333334589999999999999999


Q ss_pred             EEecC--CCcceeEEEEE
Q psy15734        105 QINTV--PMTSQKGYLQV  120 (314)
Q Consensus       105 ~~~~~--~~~~~~~~l~v  120 (314)
                      .+.|.  +..+..+.|.|
T Consensus        78 ~A~N~~~g~~~~s~~l~v   95 (96)
T cd05865          78 VVSNEDEGESEATVNVKI   95 (96)
T ss_pred             EEEcCCCCcEEEEEEEEE
Confidence            99886  34445555554

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.49  E-value=6.5e-13  Score=89.64  Aligned_cols=92  Identities=26%  Similarity=0.469  Sum_probs=66.7

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ++.+.+.+|+++.|.|.+.+.+.+.+.|++.+...+.. .......++|+.+.......++|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~-~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~DsG~Y~C~~~   82 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYF-DDKKALRDNRIELVRASWHELSISISDVSLSDEGQYTCSLF   82 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEE-cCcccccCCCEEEEECCCCcEEEEECcCCcccCEEEEEEeE
Confidence            45789999999999999999888999999755433321 11112345677664443445689999999999999999997


Q ss_pred             cCCCcceeEEEEE
Q psy15734        108 TVPMTSQKGYLQV  120 (314)
Q Consensus       108 ~~~~~~~~~~l~v  120 (314)
                      +....+..+.|.|
T Consensus        83 t~~~~~~~~~l~v   95 (95)
T cd07701          83 TMPVKTSKAYLTV   95 (95)
T ss_pred             eecCccEEEEEEC
Confidence            6555555555543

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=99.48  E-value=5.6e-13  Score=89.11  Aligned_cols=86  Identities=16%  Similarity=0.274  Sum_probs=63.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++....         .......     ..+.|.|.+++.+|+|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v~W~k~~~~~~---------~~~~~~~-----~~~~L~i~~v~~~D~G   66 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQIKWRKVDGSMP---------SSAEISM-----SGAVLKIPNIQFEDEG   66 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEEEEEECCCcCC---------CccEEEE-----eCCEEEECCCCcccCE
Confidence            3556667888999999999999999999999999999654321         1111111     1237999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .|+|.+.|. |.......|.|
T Consensus        67 ~Y~C~a~N~~G~~~~~~~l~V   87 (88)
T cd04968          67 TYECEAENIKGKDTHQGRIYV   87 (88)
T ss_pred             EEEEEEEECCCcEEEEEEEEE
Confidence            999999775 45555555554

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.48  E-value=7.2e-13  Score=87.38  Aligned_cols=81  Identities=15%  Similarity=0.198  Sum_probs=57.5

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC--CceeEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG--ETDGFIK  267 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g--~~~~~~~  267 (314)
                      |+++.|.|.+.+.|.+.+.|+++++........ ......+.....++|.|.+++.+|+|.|+|.|.|..+  ....++.
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~~sv~   79 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKGIPE-VEEVKVPATTLRSTLTFPHATVEDSGTYECAAHESTQDQKAFKKVN   79 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCCceE-EEEEecCCcEEEEEEEECCCCcCCCEEEEEEEEECccCcceeEEEE
Confidence            789999999999999999999865432111000 0011111222356999999999999999999999876  5677777


Q ss_pred             EEEE
Q psy15734        268 VYVN  271 (314)
Q Consensus       268 l~V~  271 (314)
                      |+|.
T Consensus        80 i~V~   83 (84)
T cd05861          80 ITVH   83 (84)
T ss_pred             EEEe
Confidence            7774

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.48  E-value=2.7e-13  Score=88.21  Aligned_cols=77  Identities=17%  Similarity=0.199  Sum_probs=57.2

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...+.+..+..|+++.|.|.+.|.|.| .|.|++++. .+..  ....   .     .+.|.|..+  .|+|.|+|.|.|
T Consensus         2 ~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g~-~l~~--~~~~---~-----~s~L~i~~~--~d~g~Y~C~A~N   68 (81)
T cd05749           2 TVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGGS-PLGD--PPAP---S-----PSVLNVPGL--NETSKFSCEAHN   68 (81)
T ss_pred             cCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECCE-ECCC--CCCC---C-----CCEEEEccc--cCCeEEEEEEEe
Confidence            345677889999999999999999999 799999743 3322  1111   1     138889887  478999999999


Q ss_pred             CCCCcee-EEEE
Q psy15734        258 ALGETDG-FIKV  268 (314)
Q Consensus       258 ~~g~~~~-~~~l  268 (314)
                      ..|.... ..+|
T Consensus        69 ~~G~~~s~~a~~   80 (81)
T cd05749          69 AKGVTTSRTGTV   80 (81)
T ss_pred             ccCcEEeeeEEe
Confidence            9996643 4443

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=99.47  E-value=9.5e-13  Score=87.18  Aligned_cols=82  Identities=10%  Similarity=0.176  Sum_probs=60.3

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..+.+.+|+.+.|.|.+.|.|.|.+.|++++ ..+.       ..+.++.+..... .+.|.|.++..+|+|.|+|.+.|
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v~W~k~~-~~i~-------~~~~r~~~~~~~~-~~~L~I~~~~~~D~G~Y~c~a~N   73 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTVTWSRGD-KAFT-------ETEGRVRVESYKD-LSSFVIEGAEREDEGVYTITVTN   73 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeEEEEECC-EECc-------cCCCeEEEEEcCC-eEEEEECCCccCcCEEEEEEEEe
Confidence            3578999999999999999999999999954 3321       1123555443322 34799999999999999999987


Q ss_pred             C-CCcceeEEEE
Q psy15734        109 V-PMTSQKGYLQ  119 (314)
Q Consensus       109 ~-~~~~~~~~l~  119 (314)
                      . |.....+.|.
T Consensus        74 ~~G~~~~~~~l~   85 (86)
T cd05894          74 PVGEDHASLFVK   85 (86)
T ss_pred             CCCcEEEEEEEE
Confidence            5 4444444444

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=99.47  E-value=1.3e-12  Score=87.22  Aligned_cols=86  Identities=19%  Similarity=0.333  Sum_probs=63.1

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..++..+.+.+|+++.|.|.+.|.|. .+.|+++++..+.        .+.++.+..++. ...|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~-~v~W~k~~g~~~~--------~~~r~~~~~~g~-~~~L~I~~v~~~D~G~Y~C   73 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIV--------SSQRVVVQKEGV-RSRLTIYNANIEDAGIYRC   73 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC-eEEEEeCCCeEec--------CCCCEEEEeCCC-eeEEEEecCChHHCEEEEE
Confidence            34667788999999999999999887 9999986655432        234565544332 2379999999999999999


Q ss_pred             EEecCCCc--ceeEEEEE
Q psy15734        105 QINTVPMT--SQKGYLQV  120 (314)
Q Consensus       105 ~~~~~~~~--~~~~~l~v  120 (314)
                      .+.|..+.  ...+.|.+
T Consensus        74 ~A~N~~G~~~~~~i~l~~   91 (92)
T cd05866          74 QATDAKGQTQEATVVLEI   91 (92)
T ss_pred             EEEcCCCcEEEEEEEEEE
Confidence            99876433  34444443

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.47  E-value=4.5e-13  Score=88.79  Aligned_cols=82  Identities=16%  Similarity=0.285  Sum_probs=61.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      |+..|....+..|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.++....     +.|.|.+++.+|+|.|+
T Consensus         2 ~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~k~g-~~~--------~~~~~~~~~~-----~~L~i~~~~~~D~G~Y~   67 (85)
T cd05728           2 WLKVISDTEADIGSSLRWECKASGNPRPAYRWLKNG-QPL--------ASENRIEVEA-----GDLRITKLSLSDSGMYQ   67 (85)
T ss_pred             ccccCCccEEcCCCcEEEEEEeeEeCCCEEEEEECC-EEC--------CCCCeEEEeC-----CEEEEeeCCHHHCEEEE
Confidence            456788899999999999999999999999999954 322        2233443322     27999999999999999


Q ss_pred             EEEecC-CCcceeEEEE
Q psy15734        104 CQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       104 C~~~~~-~~~~~~~~l~  119 (314)
                      |.+.|. +.....+.|.
T Consensus        68 C~a~N~~G~~~~~~~l~   84 (85)
T cd05728          68 CVAENKHGTIYASAELA   84 (85)
T ss_pred             EEEECCCCeEEEEEEEE
Confidence            999875 4444444443

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.47  E-value=2.3e-13  Score=86.06  Aligned_cols=68  Identities=16%  Similarity=0.157  Sum_probs=50.0

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      +.|.|.+.|.|+|.+.|++++..+.....++   ...+.     +|.|.++..+|+|.|+|.|.|..........+
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg~~l~~~~~~~---~~~~~-----~L~I~~v~~~D~G~YtC~a~~~~~~~~~~~~i   68 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDGLPAAEKCSRY---HVDGY-----SLVIKDVTEEDAGIYTILLGIKQYNLFKNLTI   68 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECCEECCCCCcEE---EeCCC-----EEEECcCCHHHCEEEEEEEEccccceEeeEEE
Confidence            4689999999999999999853322211222   12233     89999999999999999999987665554444

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.46  E-value=4.3e-13  Score=86.86  Aligned_cols=72  Identities=18%  Similarity=0.296  Sum_probs=53.1

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceee-eEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYED-SRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      +.|.|.+.| .|.|.+.|++++. .+........ .....  ...+.|.|.++..+|+|.|+|.|.|..|.+..++.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g~-~l~~~~~~~~~~~~~~--~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   74 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDGK-ELNRKNKPRNIKIRNK--KKNSELQINKAKLADSGEYTCVVENILGNDTVTAN   74 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCCe-eccccCCcceEEEEec--CceEEEEEccCCcccCeEEEEEEEEcCCceeEEEe
Confidence            469999999 9999999999744 3333332221 11111  12358999999999999999999999999877764

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=99.46  E-value=9.4e-13  Score=88.50  Aligned_cols=83  Identities=19%  Similarity=0.224  Sum_probs=59.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      .|..+.+.+|+++.|.|.+.+.|.+.+.|++++.. +        ..+.++.+.........|.|.+++.+|+|.|+|.+
T Consensus         7 ~p~~v~v~eG~~v~L~C~v~g~P~p~i~W~k~~~~-~--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a   77 (92)
T cd05891           7 LPDVVTIMEGKTLNLTCTVFGNPDPEVIWFKNDQD-I--------ELSEHYSVKLEQGKYASLTIKGVTSEDSGKYSINV   77 (92)
T ss_pred             CCCcEEEcCCCEEEEEEEEEEeCCCeEEEEECCEE-C--------CCCCCEEEEEcCCCEEEEEECCCChhhCEEEEEEE
Confidence            46688999999999999999888899999996532 2        12334443332222347999999999999999999


Q ss_pred             ecC-CCcceeEEE
Q psy15734        107 NTV-PMTSQKGYL  118 (314)
Q Consensus       107 ~~~-~~~~~~~~l  118 (314)
                      .|. +.....+.|
T Consensus        78 ~N~~G~~~~~~~v   90 (92)
T cd05891          78 KNKYGGETVDVTV   90 (92)
T ss_pred             EeCCCceeeEEEE
Confidence            775 444444443

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.46  E-value=1.2e-12  Score=89.05  Aligned_cols=95  Identities=21%  Similarity=0.306  Sum_probs=66.2

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|.|...+....+..|++++|.|.+.|.|.+.+.|++++ ..+....   ...++++.+.... ..+.|.|.+++.+|+|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v~W~~~~-~~~~~~~---~~~~~~~~v~~~~-~~~~L~I~~v~~~D~G   76 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSITWRTST-RNISSEE---KTLDGHIVVRSHA-RVSSLTLKYIQYTDAG   76 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEEEEEECC-ccccCCc---cccCccEEEEcCc-cEEEEEEecCccCcCE
Confidence            477777777776777899999999999999999999954 3321110   0112344433322 2347999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .|+|.+.|. |..+..+.|.|
T Consensus        77 ~Y~C~A~N~~G~~~~~~~l~v   97 (97)
T cd05869          77 EYLCTASNTIGQDSQSMYLEV   97 (97)
T ss_pred             EEEEEEecCCCCeeEEEEEEC
Confidence            999999876 55555556553

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=99.46  E-value=1.2e-12  Score=89.11  Aligned_cols=85  Identities=16%  Similarity=0.128  Sum_probs=60.9

Q ss_pred             CcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC----CceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN----DHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      ...+.+.+|+++.|.|.+.+ .|.+.+.|+| ++..+..        +........    ......|.|.+++.+|+|.|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v~W~K-dg~~i~~--------~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   80 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHINWTY-DNRTLTN--------KLTEIVTSENESEYRYVSELKLVRLKESEAGTY   80 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCccEEEe-CCeeCCC--------CcceeEEEeccCcceEEEEEEEeecCHhhCeeE
Confidence            35788999999999999999 8889999999 4444321        111111111    01124799999999999999


Q ss_pred             EEEEecC-CCcceeEEEEEE
Q psy15734        103 MCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       103 ~C~~~~~-~~~~~~~~l~v~  121 (314)
                      +|.+.|. +..+..+.|.|.
T Consensus        81 tc~A~N~~G~~~~t~~L~V~  100 (101)
T cd04975          81 TFLASNSDASKSLTFELYVN  100 (101)
T ss_pred             EEEEECCCccEEEEEEEEEE
Confidence            9999876 555666666664

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.46  E-value=2.6e-13  Score=88.03  Aligned_cols=66  Identities=24%  Similarity=0.378  Sum_probs=47.6

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~  264 (314)
                      +.|.|.+.|.|.|.+.|++++.. +.......+.. ..++     .|.|.++..    +|+|.|+|.|.|..|....
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g~~-l~~~~~~~~~~~~~~g-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNGTH-FDPEKDPRVTMKPDSG-----TLVIDNMNGGRAEDYEGEYQCYASNELGTAIS   71 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeE-CCCCCCCCEEEeCCCC-----EEEEeccCCCCCcCCCEEEEEEEEcCCCcEEc
Confidence            47999999999999999997443 32222222222 2234     888988754    7999999999999997643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05852 Ig5_Contactin-1 Fifth Ig domain of contactin-1

Probab=99.45  E-value=5.2e-13  Score=85.35  Aligned_cols=71  Identities=23%  Similarity=0.394  Sum_probs=54.0

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.+.|.+.+.|+|++ ..+        ..+.++.+..+    ++|.|.+++.+|+|.|+|.+.|. +....
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~k~~-~~l--------~~~~r~~~~~~----g~L~I~~v~~~D~G~Y~C~A~N~~G~~~~   67 (73)
T cd05852           1 GGRVIIECKPKAAPKPKFSWSKGT-ELL--------VNNSRISIWDD----GSLEILNITKLDEGSYTCFAENNRGKANS   67 (73)
T ss_pred             CCeEEEEEecceeCCCEEEEEeCC-Eec--------ccCCCEEEcCC----CEEEECcCChhHCEEEEEEEECCCCceeE
Confidence            788999999999999999999954 332        22346655433    27999999999999999999875 44555


Q ss_pred             eEEEE
Q psy15734        115 KGYLQ  119 (314)
Q Consensus       115 ~~~l~  119 (314)
                      .+.|.
T Consensus        68 ~~~l~   72 (73)
T cd05852          68 TGVLS   72 (73)
T ss_pred             EEEEE
Confidence            55554

Ig5_Contactin-1: fifth Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05892 Ig_Myotilin_C C-terminal immunoglobulin (Ig)-like domain of myotilin

Probab=99.45  E-value=6.6e-13  Score=85.14  Aligned_cols=74  Identities=18%  Similarity=0.387  Sum_probs=53.9

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.|.|.|.+.|+|++ ..+.       ....++.+..++....+|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus         1 v~l~C~v~G~P~P~i~W~k~~-~~i~-------~~~~r~~~~~~~~g~~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05892           1 VKLECQISAIPPPKIFWKRNN-EMVQ-------YNTDRISLYQDNSGRVTLLIKNVNKKDAGWYTVSAVNEAGVATCHAR   72 (75)
T ss_pred             CEEEEEEEecCCCeEEEEECC-EECc-------CCCCeEEEEEcCCCcEEEEECCCChhhCEEEEEEEEcCcCeEEEEEE
Confidence            579999999999999999954 3321       12345666554433347999999999999999999875 55555555


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05892          73 LDV   75 (75)
T ss_pred             EeC
Confidence            543

Ig_Myotilin_C: C-terminal immunoglobulin (Ig)-like domain of myotilin. Mytolin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to the latter family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Myotilin is most abundant in skeletal and cardiac muscle, and is involved in maintaining sarcomere integrity. It binds to alpha-actinin, filamin and actin. Mutations in myotilin lead to muscle disorders.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.45  E-value=1.8e-12  Score=86.97  Aligned_cols=86  Identities=13%  Similarity=0.163  Sum_probs=61.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      ++.+++...+.+|+.+.|.|.+.|.|.+.+.|++++.. +.        ......... ......|.|.+++.+|.|.|+
T Consensus         3 ~v~~p~~~~v~~G~~v~l~C~~~G~P~p~v~W~~~g~~-~~--------~~~~~~~~~-~~~~~~L~I~~v~~~D~g~Y~   72 (90)
T cd04972           3 PVDGPNATVVYEGGTATIRCTAEGSPLPKVEWIIAGLI-VI--------QTRTDTLET-TVDIYNLQLSNITSETQTTVT   72 (90)
T ss_pred             cccCCcCEEEcCCCcEEEEEEEEEcCCCeEEEEECCEE-cc--------CCccEEEEe-cCCEEEEEEecCCcccCEEEE
Confidence            34567778899999999999999999999999996532 21        111111111 122347999999999999999


Q ss_pred             EEEecC-CCcceeEEEE
Q psy15734        104 CQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       104 C~~~~~-~~~~~~~~l~  119 (314)
                      |.+.|. |.....+.|.
T Consensus        73 C~A~N~~G~~~~~~~L~   89 (90)
T cd04972          73 CTAENPVGQANVSVQVT   89 (90)
T ss_pred             EEEECCCCceeEEEEEe
Confidence            999876 4445555554

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=99.45  E-value=2.8e-12  Score=85.34  Aligned_cols=89  Identities=20%  Similarity=0.258  Sum_probs=70.2

Q ss_pred             CcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..+.|.+|+++.|.|.++++|+|. +.|.+++................+.+++.+.|++.++..+|+|.|+|.|.|....
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~a~N~~~~   90 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTSDHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFLVSNSDAS   90 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccccceeEEeccCceEEEEEEEEeecChhhCcEEEEEEECCCCe
Confidence            456799999999999999999998 9999975433222222222222244678889999999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy15734        262 TDGFIKVYVN  271 (314)
Q Consensus       262 ~~~~~~l~V~  271 (314)
                      .+.++.|.|.
T Consensus        91 ~s~tF~l~v~  100 (101)
T cd05860          91 ASVTFNVYVN  100 (101)
T ss_pred             EEEEEEEEEe
Confidence            8888888774

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.45  E-value=3e-12  Score=85.42  Aligned_cols=91  Identities=22%  Similarity=0.299  Sum_probs=69.5

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      .+++++.+|+++.|.|.+.+.....+.|++.+...+..... ....+.|+.........++|.|.+++.+|+|.|.|++.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~-~~~~d~Rf~~~~~~~~~~tL~I~~vq~~D~G~Y~Cqv~   82 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDV-RPLKDSRFQLVNFSSNELRVSLSNVSLSDEGRYFCQLY   82 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCc-cccCCcCEEEEeCCCCEEEEEECcCCcccCEEEEEEEE
Confidence            45688999999999999988777789999877554443332 33467888887645567789999999999999999997


Q ss_pred             cCCCcceeEEEE
Q psy15734        108 TVPMTSQKGYLQ  119 (314)
Q Consensus       108 ~~~~~~~~~~l~  119 (314)
                      .....+....+.
T Consensus        83 t~p~~~~~~~~~   94 (95)
T cd05881          83 TDPPQEAYTTIT   94 (95)
T ss_pred             cccCeEEEEEEE
Confidence            655555544443

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=99.45  E-value=4.3e-13  Score=86.81  Aligned_cols=70  Identities=24%  Similarity=0.352  Sum_probs=48.3

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee-EE
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG-FI  266 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~-~~  266 (314)
                      +.|.|.+.|.|.|.+.|++++..+.. ........ ..++     +|.|..+..    .|.|.|+|.|.|..|...+ .+
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g~~l~~-~~~~~~~~~~~~g-----~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s~~~   74 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNGTHFDI-DKDPKVTMKPNTG-----TLVINIMNGEKAEAYEGVYQCTARNERGAAVSNNI   74 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECCeECCC-cCCCCEEEeCCCc-----eEEEeccccCCCCCCCEEEEEEEEcCCCeEEeeEE
Confidence            47999999999999999997543322 22222222 2233     788877764    3789999999999997644 44


Q ss_pred             EE
Q psy15734        267 KV  268 (314)
Q Consensus       267 ~l  268 (314)
                      .|
T Consensus        75 ~~   76 (77)
T cd05874          75 VI   76 (77)
T ss_pred             EE
Confidence            43

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=99.44  E-value=1.8e-12  Score=87.17  Aligned_cols=84  Identities=19%  Similarity=0.254  Sum_probs=59.2

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-------CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-------DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ..+..+.+|+++.|.|.+.+.|.|.+.|+++++..+...       .++.+.....   ....|.|.++..+|+|.|+|.
T Consensus         4 ~~~~tv~~G~tv~L~C~v~g~~~~~v~W~k~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~nV~~~D~G~YtC~   80 (95)
T cd05882           4 TQDETVAVGGTVTLKCGVKEHDNSSLQWSNTAQQTLYFGEKRALRDNRIQLVKSTP---TELIISISNVQLSDEGEYTCS   80 (95)
T ss_pred             cccEEEecCCcEEEEEEEeCCCCCeEEEeccCccEEEeCCeEEEeCCeEEEEeCCC---ceEEEEECCCCcccCEEEEEE
Confidence            356678999999999999999999999999765432222       2222211111   135999999999999999999


Q ss_pred             EeeCCCCceeEEEEE
Q psy15734        255 AVNALGETDGFIKVY  269 (314)
Q Consensus       255 a~n~~g~~~~~~~l~  269 (314)
                      +.... ..++...|.
T Consensus        81 ~~t~~-~~~~~~~~~   94 (95)
T cd05882          81 IFTMP-VRTAKATVT   94 (95)
T ss_pred             EEeec-cccEEEEEE
Confidence            98833 344444443

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05854 Ig6_Contactin-2 Sixth Ig domain of contactin-2

Probab=99.44  E-value=2e-12  Score=85.39  Aligned_cols=82  Identities=20%  Similarity=0.171  Sum_probs=57.0

Q ss_pred             CcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734         37 KEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS  113 (314)
Q Consensus        37 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~  113 (314)
                      ++++|.|.+.+.|.+  .+.|+++ +..+..     ...+.++.........++|.|.+++.+|+|.|+|.+.|. +..+
T Consensus         1 ~~~~L~C~a~g~P~p~~~v~W~~~-g~~i~~-----~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~YtC~A~n~~g~~~   74 (85)
T cd05854           1 ENLTLQCHASHDPTMDLTFTWSLD-DFPIDL-----DKPNGHYRRMEVKETIGDLVIVNAQLSHAGTYTCTAQTVVDSAS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC-CeEccc-----cCCCCcEEEEEecceEeEEEEccCChhhCeEEEEEEecCCCCEE
Confidence            478999999988765  6899994 443321     111233322221122348999999999999999999776 6667


Q ss_pred             eeEEEEEEeCC
Q psy15734        114 QKGYLQVVVPP  124 (314)
Q Consensus       114 ~~~~l~v~~~p  124 (314)
                      +.+.|.|..+|
T Consensus        75 ~~~~L~V~~~P   85 (85)
T cd05854          75 ASATLVVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            78889888765

Ig6_Contactin-2: Sixth Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=99.44  E-value=3.7e-12  Score=92.92  Aligned_cols=73  Identities=34%  Similarity=0.515  Sum_probs=57.4

Q ss_pred             EEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcC
Q psy15734         88 FLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRRE  162 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~  162 (314)
                      +|.|.+++.+|+|.|.|.+.+. +.....+.|.|.++|.+...+  ......+|+.+.|.|.+.|. |. +.+.|++.
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~--~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~~   77 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSL--EKLVSMIEEPQTLICHIAGYYPLDVQVEWTRE   77 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeC--CCceeecCCcEEEEEEECCCCCCCeEEEEEEC
Confidence            6999999999999999999654 555667789999999886654  23334478889999999985 54 48999983

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05745 Ig3_Peroxidasin Third immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.44  E-value=7.9e-13  Score=85.16  Aligned_cols=72  Identities=19%  Similarity=0.294  Sum_probs=52.9

Q ss_pred             cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734         35 VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS  113 (314)
Q Consensus        35 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~  113 (314)
                      +|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.+..+...    +.|.|.+++.+|+|.|+|.+.|. +...
T Consensus         1 eG~~v~l~C~~~g~P~p~i~W~k~g-~~~--------~~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~A~N~~G~~~   67 (74)
T cd05745           1 EGQTVDFLCEAQGYPQPVIAWTKGG-SQL--------SVDRRHLVLSS----GTLRISRVALHDQGQYECQAVNIVGSQR   67 (74)
T ss_pred             CCCeEEEEeECCEecCCEEEEEECC-EEC--------CCCCCeEEccC----CeEEEeeCCHHhCEEEEEEEEeCCCcee
Confidence            6899999999999999999999954 322        12223322222    37999999999999999999875 4445


Q ss_pred             eeEEEE
Q psy15734        114 QKGYLQ  119 (314)
Q Consensus       114 ~~~~l~  119 (314)
                      ..+.|.
T Consensus        68 ~~~~L~   73 (74)
T cd05745          68 TVAQLT   73 (74)
T ss_pred             EEEEEe
Confidence            555554

Ig3_Peroxidasin: the third immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells which have undergone programmed cell death, and protection of the organism against non-self.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.43  E-value=9.3e-13  Score=85.24  Aligned_cols=66  Identities=24%  Similarity=0.337  Sum_probs=46.7

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCC----CCCeEEEEEEeeCCCCcee
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILS----HQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~----~d~G~Y~C~a~n~~g~~~~  264 (314)
                      +.|.|.+.|+|.|.+.|++++..... ...++.+ ...++     +|.|..+..    +|+|.|+|.|.|..|....
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g~~~~~~~~~~~~~-~~~~~-----~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~~~s   71 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNGKFFNVAKDPRVSM-RRRSG-----TLVIDFSGGGRPEDYEGEYQCFARNNLGTALS   71 (77)
T ss_pred             CEEEEeccccCCCEEEEEECCEEccCcCCCcEEE-eCCCc-----eEEEeccCCCCCCCCCEEEEEEEEeccceEEE
Confidence            47999999999999999997543221 2222222 12333     899987642    4699999999999997643

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=99.43  E-value=3.9e-12  Score=85.52  Aligned_cols=85  Identities=16%  Similarity=0.290  Sum_probs=60.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ..|....+..|+++.|.|.+.+.|. .+.|++.++..+.        ...++.+...+.....|.|.+++.+|+|.|+|.
T Consensus         5 v~p~~~~v~~G~~~~l~C~~~G~p~-~i~W~~~~~~~~~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   75 (92)
T cd04977           5 IVPSQGEISVGESKFFLCQVIGEPK-DISWFSPNGEKLV--------TQQQISVVQNDDVRSTLTIYNANIEDAGIYKCV   75 (92)
T ss_pred             EecCcEEECCCCeEEEEEEeEeeCC-eEEEECCCCCEec--------cCCCEEEEeCCCCEEEEEEecCCcccCEEEEEE
Confidence            4466788999999999999998864 9999985554332        123444444443445899999999999999999


Q ss_pred             EecC-C-CcceeEEEE
Q psy15734        106 INTV-P-MTSQKGYLQ  119 (314)
Q Consensus       106 ~~~~-~-~~~~~~~l~  119 (314)
                      +.|. + .....+.|.
T Consensus        76 A~N~~g~~~~~sv~l~   91 (92)
T cd04977          76 ATDAKGTESEATVNLK   91 (92)
T ss_pred             EEcCCCCcceeEEEEE
Confidence            9876 3 234444443

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=99.42  E-value=2.3e-12  Score=87.76  Aligned_cols=93  Identities=24%  Similarity=0.310  Sum_probs=64.0

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.|. .+....+.+|+++.|.|.+.+.|.+.+.|++++ ..+...   ....+.++.+... ...+.|.|.+++.+|+|
T Consensus         2 ~P~i~-~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~---~~~~~~~~~~~~~-~~~~~L~I~~v~~~D~G   75 (96)
T cd05732           2 QPKIT-YLENQTAVELEQITLTCEAEGDPIPEITWRRAT-RNFSEG---DKSLDGRIVVRGH-ARVSSLTLKDVQLTDAG   75 (96)
T ss_pred             Cccce-ecCceeEecCCcEEEEEEEeEcCCCcEEEEECC-cccCCC---CccccceEEEeCC-ccEEEEEECcCCcCcCE
Confidence            46664 455788999999999999999999999999954 222110   0011233433322 22348999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~  119 (314)
                      .|+|.+.|. |..+..+.|.
T Consensus        76 ~Y~C~a~N~~G~~~~s~~l~   95 (96)
T cd05732          76 RYDCEASNRIGGDQQSMYLE   95 (96)
T ss_pred             EeEEEEEeCCCCcEEEEEEe
Confidence            999999875 4445555554

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>cd05893 Ig_Palladin_C C-terminal immunoglobulin (Ig)-like domain of palladin

Probab=99.42  E-value=1.1e-12  Score=84.30  Aligned_cols=74  Identities=20%  Similarity=0.373  Sum_probs=53.1

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      ++|.|.+.|.|.|.+.|+|++.. +.       ....++.+..++.....|.|.+++.+|+|.|+|.+.|. |..+..+.
T Consensus         1 v~l~C~v~G~P~P~v~W~k~~~~-l~-------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~a~   72 (75)
T cd05893           1 VRLECRVSGVPHPQIFWKKENES-LT-------HNTDRVSMHQDNCGYICLLIQGATKEDAGWYTVSAKNEAGIVSCTAR   72 (75)
T ss_pred             CEEEEEEeEecCCEEEEEECCEE-CC-------CCCCeEEEEEcCCCEEEEEECCCCHHHCEEEEEEEEcCCCEEEEEEE
Confidence            57999999999999999995532 21       12345555444333336999999999999999999876 44555555


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      |.|
T Consensus        73 L~V   75 (75)
T cd05893          73 LDV   75 (75)
T ss_pred             EeC
Confidence            553

Ig_Palladin_C: C-terminal immunoglobulin (Ig)-like domain of palladin. Palladin belongs to the palladin-myotilin-myopalladin family. Proteins belonging to this family contain multiple Ig-like domains and function as scaffolds, modulating actin cytoskeleton. Palladin binds to alpha-actinin ezrin, vasodilator-stimulated phosphoprotein VASP, SPIN90 (DIP, mDia interacting protein), and Src. Palladin also binds F-actin directly, via its Ig3 domain. Palladin is expressed as several alternatively spliced isoforms, having various combinations of Ig-like domains, in a cell-type-specific manner. It has been suggested that palladin's different Ig-like domains may be specialized for distinct functions.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=99.42  E-value=2.8e-12  Score=87.07  Aligned_cols=90  Identities=22%  Similarity=0.321  Sum_probs=63.9

Q ss_pred             CceecC--CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         22 PRFAEP--VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        22 p~~~~~--~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      |.|...  +..+.+..|+++.|.|.+.|.|.+.+.|++++ ..+..       .+.++.....   ...|.|.+++.+|+
T Consensus         2 p~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v~W~k~g-~~~~~-------~~~~~~~~~~---~~~L~I~~v~~~D~   70 (95)
T cd05730           2 PTIRARQSEVNATANLGQSVTLACDADGFPEPTMTWTKDG-EPIES-------GEEKYSFNED---GSEMTILDVDKLDE   70 (95)
T ss_pred             CccccCCcccceEEeCCCCEEEEEeccEeCCCEEEEEECC-EECcC-------CCCEEEEeCC---CCEEEECCCChhhC
Confidence            444443  34568899999999999999999999999954 33211       1123322221   12699999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEe
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      |.|+|.+.|. |.....+.|.|.+
T Consensus        71 G~Y~C~a~N~~G~~~~~~~L~V~~   94 (95)
T cd05730          71 AEYTCIAENKAGEQEAEIHLKVFA   94 (95)
T ss_pred             EEEEEEEEcCCCeEEEEEEEEEEe
Confidence            9999999876 5556677777764

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05735 Ig8_DSCAM Eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.41  E-value=4.4e-12  Score=84.42  Aligned_cols=82  Identities=21%  Similarity=0.292  Sum_probs=60.6

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe---CCceeEEEEEeeecCCCCeEEEEEEecC-CC
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF---NDHRSWFLHLRDVQETDRGWYMCQINTV-PM  111 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~  111 (314)
                      |+.+.|.|.+.+.|.+.+.|++++ ..+.       ....++.+..   .......|.|.++..+|+|.|+|.+.|. |.
T Consensus         1 g~~~~l~C~~~g~p~~~i~W~k~~-~~i~-------~~~~r~~~~~~~~~~~~~s~L~I~~~~~~D~G~YtC~A~N~~G~   72 (88)
T cd05735           1 GQKKEMSCTAHGEKPIIVRWEKED-RIIN-------PEMSRYLVSTKEVGDEVISTLQILPTVREDSGFFSCHAINSYGE   72 (88)
T ss_pred             CCeEEEEEEEECCCCCEEEEeeCC-EECC-------CCCCcEEEEEecCCCcEEEEEEECCCCcccCEEEEEEEEcCCCc
Confidence            789999999999999999999954 3221       1123443332   1222347999999999999999999876 66


Q ss_pred             cceeEEEEEEeCCc
Q psy15734        112 TSQKGYLQVVVPPR  125 (314)
Q Consensus       112 ~~~~~~l~v~~~p~  125 (314)
                      ....+.|.|..+|.
T Consensus        73 ~~~~~~L~V~~~P~   86 (88)
T cd05735          73 DRGIIQLTVQEPPD   86 (88)
T ss_pred             ceEEEEEEEeCCCC
Confidence            67788888887764

Ig8_DSCAM: the eight immunoglobulin (Ig) domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.41  E-value=5.3e-12  Score=85.64  Aligned_cols=91  Identities=21%  Similarity=0.380  Sum_probs=63.9

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      .+.+.+.+|+++.|.|.+.+.+.+.+.|++.++..+..... ....+.|+.+.......+.|.|.+++.+|+|.|+|.+.
T Consensus         4 ~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~-~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~~~   82 (95)
T cd05717           4 TQDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDK-RALRDNRIQLVNFSANELSISISNVSLSDEGRYTCSLY   82 (95)
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccc-cccccCcEEEEcCCCCeeEEEEccCCcccCEEEEEEEe
Confidence            45678999999999999988777899999755433322111 11234576664433445689999999999999999997


Q ss_pred             cCCCcceeEEEE
Q psy15734        108 TVPMTSQKGYLQ  119 (314)
Q Consensus       108 ~~~~~~~~~~l~  119 (314)
                      .....+..+.|.
T Consensus        83 ~~~~~~~~~~~~   94 (95)
T cd05717          83 TMPVQTAKATVT   94 (95)
T ss_pred             cCCCceEEEEEE
Confidence            655445555554

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05853 Ig6_Contactin-4 Sixth Ig domain of contactin-4

Probab=99.41  E-value=2.2e-12  Score=84.27  Aligned_cols=82  Identities=20%  Similarity=0.250  Sum_probs=57.9

Q ss_pred             CcEEEEEEecC--CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734         37 KEALMACVVEN--LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS  113 (314)
Q Consensus        37 ~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~  113 (314)
                      +++.|.|.+.+  ...+.+.|++ +++.+..     ...+.++.........+.|.|.+++.+|+|+|+|.+.+. +..+
T Consensus         1 ~~~~l~C~v~~d~~l~~~~~W~~-dg~~i~~-----~~~~~~~~~~~~~~~~~~L~I~nv~~~dsG~YtC~a~n~~~~~~   74 (85)
T cd05853           1 ESIVLPCQVSHDHSLDIVFTWSF-NGHLIDF-----QKDGDHFERVGGQDSAGDLMIRSIQLKHAGKYVCMVQTSVDKLS   74 (85)
T ss_pred             CcEEEEEEeccCCCCCcEEEEEE-CCEECcc-----cCCCccEEEeccCCCCCcEEEecCCHHHCEEEEEEEEcccCceE
Confidence            47899999976  4578999999 4454421     012224433221112237999999999999999999775 5667


Q ss_pred             eeEEEEEEeCC
Q psy15734        114 QKGYLQVVVPP  124 (314)
Q Consensus       114 ~~~~l~v~~~p  124 (314)
                      +.+.|.|.+||
T Consensus        75 a~a~L~V~~pP   85 (85)
T cd05853          75 AAADLIVRGPP   85 (85)
T ss_pred             EEEEEEEecCC
Confidence            88899998876

Ig6_Contactin-4: sixth Ig domain of the neural cell adhesion molecule contactin-4. Contactins are neural cell adhesion molecules, and are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. Highest expresson of contactin-4 is in testes, thyroid, small intestine, uterus and brain. Contactin-4 plays a role in the response of neuroblastoma cells to differentiating agents, such as retinoids. The contactin 4 gene is associated with cerebellar degeneration in spinocerebellar ataxia type 16.

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.41  E-value=3.1e-12  Score=86.04  Aligned_cols=81  Identities=23%  Similarity=0.327  Sum_probs=57.4

Q ss_pred             CeEEcCCCcceeec---CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEE
Q psy15734        176 PMLTIPNQLEGAFV---SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSY  251 (314)
Q Consensus       176 p~~~~~~~~~~v~~---g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y  251 (314)
                      |.|...+....+..   |+.+.|.|.+.|+|.|.+.|++++ ..+......... ..++     .|.|.++. .+|+|.|
T Consensus         2 P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~-~~l~~~~~~~~~-~~~~-----~L~i~~~~~~~d~G~Y   74 (91)
T cd04967           2 PVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNG-TEIDDEPDSRYS-LVGG-----NLVISNPSKAKDAGRY   74 (91)
T ss_pred             CeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECC-EECCCCCCCCEE-EECC-----EEEEecCCccCCCEEE
Confidence            45555565554443   467999999999999999999974 333222222222 2334     89998887 4899999


Q ss_pred             EEEEeeCCCCce
Q psy15734        252 RCVAVNALGETD  263 (314)
Q Consensus       252 ~C~a~n~~g~~~  263 (314)
                      +|.|.|..|...
T Consensus        75 ~C~a~N~~G~~~   86 (91)
T cd04967          75 QCLASNIVGTVL   86 (91)
T ss_pred             EEEEEcCCCEEE
Confidence            999999999654

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=99.40  E-value=1.8e-12  Score=101.54  Aligned_cols=120  Identities=10%  Similarity=0.052  Sum_probs=80.9

Q ss_pred             CcceeecCccEEEEEEEeecCC-----------ceeEEecCCCeeeecC--Cc---eeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA-----------SLNYWTNEKGDMIITG--DD---YEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~-----------p~~~W~~~~~~~~~~~--~~---~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      ..+.+.+|+++.|.|.+.+.|+           +.+.|+|++.......  .+   ..+...+.+ .....|.|.++..+
T Consensus        30 ~~~~v~eGe~v~L~C~~~~~~~~~~~~~~~~~~~~V~W~k~~s~~~v~~~~~~~~~~~i~~~~~~-~r~~~L~I~~v~~~  108 (227)
T PHA02826         30 TPVYAKFGDPMVLLCTGKHYKKSIFFDKTFITSYNVTWSKTDSLAFVRDSGARTKIKKITHNEIG-DRSENLWIGNVINI  108 (227)
T ss_pred             ceEEecCCCCEEEEccccccccccccccccCCCccEEEEeCCeEEEEEcCCCcccccccccccee-cCCCeEEECCCChH
Confidence            3456789999999999988653           4889999753322211  11   000001000 01238999999999


Q ss_pred             CCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEee-----ccCCCccceE
Q psy15734        247 QFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN-----GVVPSVSHRI  307 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~-----~~~~~~~w~v  307 (314)
                      |+|.|+|.|.|..+.....+.|.|...+ .   ...+..++...++|.+.+     .+.|+|+|.-
T Consensus       109 DsG~Y~C~a~N~~~~~~~~i~L~V~~~~-~---~~~~~~G~~v~L~C~~~~~~~~~~p~p~I~WyK  170 (227)
T PHA02826        109 DEGIYICTISSGNICEESTIRLTFDSGT-I---NYQFNSGKDSKLHCYGTDGISSTFKDYTLTWYK  170 (227)
T ss_pred             HCEEEEEEEEECCcceEEEEEEEEecCC-c---cceEecCCCEEEEeeCCCCccccCCCceEEEEE
Confidence            9999999999999888888888885432 1   123345666789999874     3568999953

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=99.39  E-value=4.6e-12  Score=85.48  Aligned_cols=85  Identities=15%  Similarity=0.187  Sum_probs=60.2

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +++..+.+|+++.|.|.+.+.|.+.+.|++.++..+.       ...++......   ....+|.|.+++.+|+|.|+|.
T Consensus         4 ~~~v~v~eG~~v~L~C~~~~~p~~~v~W~~~~~~~l~~~~~~~~~~~r~~~~~~~---~~~~sL~I~~v~~~DsG~Y~C~   80 (95)
T cd07701           4 TQNVTVVEGGTANLTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRAS---WHELSISISDVSLSDEGQYTCS   80 (95)
T ss_pred             cceEEEecCCcEEEEEEEecCCceEEEEeCCCCeEEEEcCcccccCCCEEEEECC---CCcEEEEECcCCcccCEEEEEE
Confidence            3567889999999999999999999999875433221       22233321111   1234899999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      +.+..+ ......|+|
T Consensus        81 ~~t~~~-~~~~~~l~v   95 (95)
T cd07701          81 LFTMPV-KTSKAYLTV   95 (95)
T ss_pred             eEeecC-ccEEEEEEC
Confidence            998543 366666654

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.39  E-value=6.2e-12  Score=83.58  Aligned_cols=82  Identities=21%  Similarity=0.327  Sum_probs=61.6

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+..|+++.|.|.+.+.|.+.+.|++++. .+...........   ......|.|.++..+|+|.|.|.+.|..|....
T Consensus         4 ~~~~~G~~~~l~C~~~~~p~~~v~W~k~~~-~~~~~~~~~~~~~---~~~~~~l~i~~~~~~d~g~Y~C~~~n~~g~~~~   79 (85)
T cd05729           4 HAVPAGSTVRLKCPASGNPRPTITWLKDGK-PFKKEHRIGGYKV---RKKKWTLILESVVPSDSGKYTCIVENKYGSINH   79 (85)
T ss_pred             eEecCCCcEEEEEEcCCCCCCeEEEEECCE-ECcccCceeEEEc---cCcEEEEEEeECCcccCEEEEEEEEECCceEEE
Confidence            456789999999999999999999999743 3332222211111   112348999999999999999999999999888


Q ss_pred             EEEEEE
Q psy15734        265 FIKVYV  270 (314)
Q Consensus       265 ~~~l~V  270 (314)
                      ++.|.|
T Consensus        80 ~~~l~v   85 (85)
T cd05729          80 TYKVDV   85 (85)
T ss_pred             EEEEeC
Confidence            887764

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.39  E-value=2.2e-12  Score=85.56  Aligned_cols=78  Identities=22%  Similarity=0.340  Sum_probs=62.0

Q ss_pred             cCCCcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      .++....+.+|++++|.|.+.+ .|.+.+.|++++....  . ..   ...++     .|.|.+++.+|+|.|+|.|.|.
T Consensus         6 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~~~--~-~~---~~~~~-----~L~I~~v~~~DsG~Y~C~a~n~   74 (85)
T cd05754           6 EEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGGLP--S-RA---MDFNG-----ILTIRNVQLSDAGTYVCTGSNM   74 (85)
T ss_pred             cCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCcCC--C-cc---cccCC-----EEEECCCCHHHCEEEEEEEecc
Confidence            4566778899999999999975 7889999999754321  1 11   11223     8999999999999999999999


Q ss_pred             CCCceeEEEE
Q psy15734        259 LGETDGFIKV  268 (314)
Q Consensus       259 ~g~~~~~~~l  268 (314)
                      .|...+++.|
T Consensus        75 ~g~~~~~~~l   84 (85)
T cd05754          75 LDTDEATATL   84 (85)
T ss_pred             CCeEeEEEEE
Confidence            9999888766

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05744 Ig_Myotilin_C_like Immunoglobulin (Ig)-like domain of myotilin, palladin, and myopalladin

Probab=99.38  E-value=4.6e-12  Score=81.62  Aligned_cols=73  Identities=18%  Similarity=0.355  Sum_probs=52.7

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.|.|.|.+.|++++ ..+.       ....++.+...+.....|.|.+++.+|+|.|+|.+.|. |.....+.
T Consensus         1 v~L~C~v~G~P~P~v~W~k~~-~~i~-------~~~~r~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   72 (75)
T cd05744           1 VRLECRVSAIPPPQIFWKKNN-EMLT-------YNTDRISLYQDNCGRICLLIQNANKEDAGWYTVSAVNEAGVVSCNAR   72 (75)
T ss_pred             CEEEEEEeecCCCeEEEEECC-EECC-------CCCCcEEEEEcCCCeEEEEECCCCcccCEEEEEEEEcCCCcEEEEEE
Confidence            579999999999999999954 3321       12235555444333447999999999999999999775 55555555


Q ss_pred             EE
Q psy15734        118 LQ  119 (314)
Q Consensus       118 l~  119 (314)
                      |.
T Consensus        73 l~   74 (75)
T cd05744          73 LD   74 (75)
T ss_pred             Ee
Confidence            54

Ig_Myotilin_like_C: immunoglobulin (Ig)-like domain in myotilin, palladin, and myopalladin. Myotilin, palladin, and myopalladin function as scaffolds that regulate actin organization. Myotilin and myopalladin are most abundant in skeletal and cardiac muscle; palladin is ubiquitously expressed in the organs of developing vertebrates and plays a key role in cellular morphogenesis. The three family members each interact with specific molecular partners: all three bind to alpha-actinin; in addition, palladin also binds to vasodilator-stimulated phosphoprotein (VASP) and ezrin, myotilin binds to filamin and actin, and myopalladin also binds to nebulin and cardiac ankyrin repeat protein (CARP).

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=99.38  E-value=6.7e-12  Score=83.22  Aligned_cols=82  Identities=20%  Similarity=0.183  Sum_probs=55.8

Q ss_pred             CcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcc
Q psy15734         37 KEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTS  113 (314)
Q Consensus        37 ~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~  113 (314)
                      ++++|.|.+.+.|.+  .+.|+++ +..+...     ..+.++.........+.|.|.+++.+|+|.|+|.+.|. +..+
T Consensus         1 e~~~L~C~~~g~P~p~i~~~W~~~-g~~i~~~-----~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~   74 (85)
T cd04970           1 ESITLQCHASHDPTLDLTFTWSFN-GVPIDFD-----KDGGHYRRVGGKDSNGDLMIRNAQLKHAGKYTCTAQTVVDSLS   74 (85)
T ss_pred             CcEEEEEEEecCCCCCeEEEEEEC-CeEeecc-----CCCccEEEEecccccceEEEccCCHHhCeeeEEEEecCCCcEE
Confidence            478999999987765  6799994 4443211     11122221111122347999999999999999999775 5567


Q ss_pred             eeEEEEEEeCC
Q psy15734        114 QKGYLQVVVPP  124 (314)
Q Consensus       114 ~~~~l~v~~~p  124 (314)
                      ....|.|..+|
T Consensus        75 ~~~~l~V~~pP   85 (85)
T cd04970          75 ASADLIVRGPP   85 (85)
T ss_pred             EEEEEEEECCC
Confidence            77888888765

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=99.38  E-value=8e-12  Score=85.83  Aligned_cols=95  Identities=20%  Similarity=0.326  Sum_probs=60.3

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEE--eeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHL--RDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i--~~~~~~d   98 (314)
                      +|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|+|++ ..+....   .....+.....++. ...+.+  .+++.+|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g-~~l~~~~---~~~~~~~~~~~~~~-~~~~~i~~~~~~~~D   75 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTIQWLKNG-QPLETDK---DDPRSHRIVLPSGS-LFFLRVVHGRKGRSD   75 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEEEEEECC-EECcccc---CCCCcceEEecCCc-EEEEEeeccCCCcCc
Confidence            588888899999999999999999999999999999954 3322100   00011111111111 112222  2346899


Q ss_pred             CeEEEEEEecCC-C-cceeEEEEE
Q psy15734         99 RGWYMCQINTVP-M-TSQKGYLQV  120 (314)
Q Consensus        99 ~G~Y~C~~~~~~-~-~~~~~~l~v  120 (314)
                      +|.|+|.+.|.. . .+..+.|.|
T Consensus        76 ~G~Y~C~a~N~~G~~~s~~~~l~v   99 (100)
T cd07693          76 EGVYVCVAHNSLGEAVSRNASLEV   99 (100)
T ss_pred             CEEEEEEEEccccceecceEEEEe
Confidence            999999998763 3 344445544

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05726 Ig4_Robo Fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.37  E-value=7.3e-12  Score=84.00  Aligned_cols=83  Identities=25%  Similarity=0.377  Sum_probs=59.3

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.+.|.+.+.|++++...+.... .......++.+..+    +.|.|.+++.+|+|.|+|.+.|. |....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~g~~~~~~~~-~~~~~~~r~~v~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~   75 (90)
T cd05726           1 GRTVTFQCEATGNPQPAIFWQKEGSQNLLFSY-QPPQSSSRFSVSQT----GDLTITNVQRSDVGYYICQTLNVAGSILT   75 (90)
T ss_pred             CCEEEEEEECCccCCCEEEEEeCCCcceeecc-cCCCCCCeEEECCC----CeEEEeeCChhhCEEEEEEEEcCCCceEE
Confidence            78999999999999999999996543222111 11122345554332    37999999999999999999875 56666


Q ss_pred             eEEEEEEeC
Q psy15734        115 KGYLQVVVP  123 (314)
Q Consensus       115 ~~~l~v~~~  123 (314)
                      .+.|.|...
T Consensus        76 ~~~l~V~~~   84 (90)
T cd05726          76 KAYLEVTDV   84 (90)
T ss_pred             EEEEEEeec
Confidence            777887753

Ig4_Robo: domain similar to the fhird immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04973 Ig1_FGFR First immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.37  E-value=7.6e-12  Score=81.56  Aligned_cols=67  Identities=22%  Similarity=0.352  Sum_probs=51.1

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      |+...+.+|+.+.|.|.+.+. .+.+.|+|++ ..+        ..+.++.+..     ..|.|.+++.+|+|.|+|.+.
T Consensus         1 ~~~~~~~~G~~v~l~C~~~~~-~~~v~W~k~g-~~l--------~~~~~~~~~~-----~~L~I~~~~~~DsG~Y~C~a~   65 (79)
T cd04973           1 VESYSAHPGDLLQLRCRLRDD-VQSINWTKDG-VQL--------GENNRTRITG-----EEVQIKDAVPRDSGLYACVTS   65 (79)
T ss_pred             CCcEEecCCCCEEEEEEecCC-CceEEEeeCC-cCC--------CCCceEEEeC-----CEEEECCCChhhCEEEEEEEe
Confidence            456788999999999999885 5689999954 332        2233444432     179999999999999999997


Q ss_pred             cC
Q psy15734        108 TV  109 (314)
Q Consensus       108 ~~  109 (314)
                      +.
T Consensus        66 n~   67 (79)
T cd04973          66 SP   67 (79)
T ss_pred             CC
Confidence            64

Ig1_FGFR: The first immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for all FGFs.

>cd04969 Ig5_Contactin_like Fifth Ig domain of contactin

Probab=99.36  E-value=5.1e-12  Score=81.17  Aligned_cols=71  Identities=21%  Similarity=0.408  Sum_probs=52.7

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.+.|.+.+.|++++. .+        ..+.++.+..+    +.|.|.+++.+|+|.|+|.+.|. +....
T Consensus         1 G~~v~L~C~~~g~P~p~v~W~k~~~-~~--------~~~~~~~~~~~----~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~   67 (73)
T cd04969           1 GGDVIIECKPKAAPKPTISWSKGTE-LL--------TNSSRICIWPD----GSLEILNVTKSDEGKYTCFAENFFGKANS   67 (73)
T ss_pred             CCeEEEEEeeeEcCCCEEEEEECCE-Ec--------ccCCCEEECCC----CeEEEccCChhHCEEEEEEEECCCCceEE
Confidence            7889999999999999999999553 22        22345444332    27999999999999999999876 44444


Q ss_pred             eEEEE
Q psy15734        115 KGYLQ  119 (314)
Q Consensus       115 ~~~l~  119 (314)
                      .+.|.
T Consensus        68 ~~~l~   72 (73)
T cd04969          68 TGSLS   72 (73)
T ss_pred             EEEEE
Confidence            45544

Ig5_Contactin_like: Fifth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=99.36  E-value=7.4e-12  Score=83.14  Aligned_cols=80  Identities=15%  Similarity=0.285  Sum_probs=55.4

Q ss_pred             eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-
Q psy15734         31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-  109 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-  109 (314)
                      ..+.+|+.+.|.|.+.+.|.+.+.|++++ ..+....     ....+...   ...+.|.|.+++.+|+|.|+|.+.|. 
T Consensus         4 ~~v~~G~~~~L~C~~~g~P~p~i~W~k~g-~~l~~~~-----~~~~~~~~---~~~~~l~i~~~~~~D~G~Y~C~a~N~~   74 (85)
T cd05857           4 HAVPAANTVKFRCPAAGNPTPTMRWLKNG-KEFKQEH-----RIGGYKVR---NQHWSLIMESVVPSDKGNYTCVVENEY   74 (85)
T ss_pred             EEcCCCCEEEEEEEcCCCCCCEEEEEECC-EECCCCC-----ceeeeEEe---CCceEEEEccCCcccCEEEEEEEEeCC
Confidence            45788999999999999999999999954 3322100     00011111   12347999999999999999999875 


Q ss_pred             CCcceeEEEE
Q psy15734        110 PMTSQKGYLQ  119 (314)
Q Consensus       110 ~~~~~~~~l~  119 (314)
                      |.....+.|.
T Consensus        75 G~~~~~~~l~   84 (85)
T cd05857          75 GSINHTYHLD   84 (85)
T ss_pred             CEEEEEEEEE
Confidence            4445555554

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=99.36  E-value=7.2e-12  Score=85.39  Aligned_cols=88  Identities=19%  Similarity=0.183  Sum_probs=59.2

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ...+..|+.+.|.|.+.|.|.|.+.|+|++ ..+.............+   ........|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~~~~~~~~~~~l~~~v~g~P~P~v~W~kdg-~~l~~~~~~~~~~~~~~---~~~~~~s~L~I~~v~~~D~G~Ytc~A~N~   87 (101)
T cd05859          12 LEFANLHEVKEFVVEVEAYPPPQIRWLKDN-RTLIENLTEITTSEHNV---QETRYVSKLKLIRAKEEDSGLYTALAQNE   87 (101)
T ss_pred             eEEEecCCcEEEEEEEEEeCCCceEEEECC-EECcCCcceEEeccccc---cceeeccEEEEeeCCHHHCEEEEEEEEcC
Confidence            677889999999999999999999999944 44321111101000000   00011237999999999999999999875


Q ss_pred             -CCcceeEEEEEE
Q psy15734        110 -PMTSQKGYLQVV  121 (314)
Q Consensus       110 -~~~~~~~~l~v~  121 (314)
                       +..+..+.|.|.
T Consensus        88 ~g~~~~t~~l~V~  100 (101)
T cd05859          88 DAVKSYTFALQIQ  100 (101)
T ss_pred             CceEEEEEEEEEE
Confidence             455556666664

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>cd05867 Ig4_L1-CAM_like Fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.35  E-value=7.4e-12  Score=81.06  Aligned_cols=74  Identities=24%  Similarity=0.346  Sum_probs=52.4

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.+.|.+.+.|++++ ..+...     ....++...     .+.|.|.+++.+|+|.|+|.+.|. +....
T Consensus         1 G~~v~l~C~~~G~P~p~i~W~k~g-~~i~~~-----~~~~~~~~~-----~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~   69 (76)
T cd05867           1 GETARLDCQVEGIPTPNITWSING-APIEGT-----DPDPRRHVS-----SGALILTDVQPSDTAVYQCEARNRHGNLLA   69 (76)
T ss_pred             CCeEEEEEEeeEeCCCeEEEEECC-EECCCC-----CCCceEEee-----CCEEEECCCChhhCEEEEEEEECCCCeEEE
Confidence            789999999999999999999944 432210     011233221     237999999999999999999875 44555


Q ss_pred             eEEEEE
Q psy15734        115 KGYLQV  120 (314)
Q Consensus       115 ~~~l~v  120 (314)
                      .+.|.|
T Consensus        70 ~~~l~V   75 (76)
T cd05867          70 NAHVHV   75 (76)
T ss_pred             EEEEEE
Confidence            555654

Ig4_L1-CAM_like: fourth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=99.35  E-value=2.3e-11  Score=81.35  Aligned_cols=79  Identities=20%  Similarity=0.336  Sum_probs=57.8

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      +....+.+|++++|.|.+.+. .+.+.|++++. .+         ...++.+..+   ...|.|.+++.+|+|.|+|.+.
T Consensus        10 ~~~~~v~~g~~v~l~C~a~g~-~p~i~W~kng~-~l---------~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~   75 (91)
T cd05740          10 VGNQPPEDNQPVTLTCEAEGQ-ATYIWWVNNGS-LL---------VPPRLQLSND---NRTLTFNNVTRSDTGHYQCEAS   75 (91)
T ss_pred             cCccccccCCcEEEEEEeCCC-CCEEEEEECCE-EC---------CCCCEEEeCC---CCEEEECcCChhhCEEEEEEEE
Confidence            457789999999999999998 89999999543 22         1233333322   1279999999999999999998


Q ss_pred             cCCCc--ceeEEEEE
Q psy15734        108 TVPMT--SQKGYLQV  120 (314)
Q Consensus       108 ~~~~~--~~~~~l~v  120 (314)
                      |..+.  +..+.|.|
T Consensus        76 N~~G~~~S~~~~L~V   90 (91)
T cd05740          76 NEVSNMTSDPYILNV   90 (91)
T ss_pred             cCCCCEEeeeEEEEe
Confidence            76433  34455554

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05723 Ig4_Neogenin Fourth immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.35  E-value=8.9e-12  Score=79.44  Aligned_cols=69  Identities=19%  Similarity=0.320  Sum_probs=50.1

Q ss_pred             cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734         38 EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG  116 (314)
Q Consensus        38 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~  116 (314)
                      ++.|.|.+.|.|.+.+.|+|++.. +        ....++.+..++    .|.|.+++.+|+|.|+|.+.|. +.....+
T Consensus         1 ~v~l~C~~~G~P~p~v~W~k~g~~-~--------~~~~~~~~~~~~----~l~i~~v~~~D~G~Y~C~A~N~~G~~~~~~   67 (71)
T cd05723           1 DVIFECEVTGKPTPTVKWVKNGDM-V--------IPSDYFKIVKEH----NLQVLGLVKSDEGFYQCIAENDVGNVQASA   67 (71)
T ss_pred             CEEEEEEEEEeCCCEEEEEECCeE-C--------CCCCCEEEEecC----CEEEEcCCcccCEEEEEEEEcCCCEEEEEE
Confidence            478999999999999999996532 2        123344443332    5888999999999999999875 4445555


Q ss_pred             EEE
Q psy15734        117 YLQ  119 (314)
Q Consensus       117 ~l~  119 (314)
                      .|.
T Consensus        68 ~L~   70 (71)
T cd05723          68 QLI   70 (71)
T ss_pred             EEE
Confidence            554

Ig4_Neogenin: fourth immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=99.34  E-value=1e-11  Score=82.20  Aligned_cols=81  Identities=17%  Similarity=0.188  Sum_probs=58.1

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeee--cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMII--TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      |+++.|.|.+.+.|.+  .+.|.+++.....  .....+.. ....+...++|.|.+++.+|+|.|+|.|.|..|....+
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~~~~~~~~-~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~~   79 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKSVSENRRS-LQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIAKNS   79 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCcccccceeccccccc-ccccceeeeEEEEecCCcccCEEEEEEEeecceEeccc
Confidence            7899999999987654  6689886543211  11110111 11112345699999999999999999999999988888


Q ss_pred             EEEEEE
Q psy15734        266 IKVYVN  271 (314)
Q Consensus       266 ~~l~V~  271 (314)
                      ..|.|+
T Consensus        80 t~~~V~   85 (86)
T cd05862          80 TIVIVH   85 (86)
T ss_pred             EEEEEe
Confidence            888886

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.34  E-value=9.4e-12  Score=83.31  Aligned_cols=83  Identities=18%  Similarity=0.202  Sum_probs=59.0

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +....+.+|+++.|.|.+.+ |.+.+.|++++........ ..+.... ..     .|.|.++..+|+|.|+|.|.|..+
T Consensus         3 ~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~~~~~~~~~~~~~~~-~~-----~L~I~~~~~~D~G~Y~C~a~~~~~   75 (89)
T cd04979           3 EKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGPLQRKEEPEERLLVT-ED-----GLLIRSVSPADAGVYTCQSVEHGF   75 (89)
T ss_pred             ceEEEEECCCcEEEEEeCCC-CCceEEEEECCcccccccCcCceEEEc-CC-----CEEEccCCHHHCEEEEEEEecCcc
Confidence            45567889999999999987 8889999998544322210 1112211 22     689999999999999999987654


Q ss_pred             -CceeEEEEEEE
Q psy15734        261 -ETDGFIKVYVN  271 (314)
Q Consensus       261 -~~~~~~~l~V~  271 (314)
                       ....++.|.|.
T Consensus        76 ~~~~~~~~l~V~   87 (89)
T cd04979          76 KQTLATYSLNVL   87 (89)
T ss_pred             ceeEeEEEEEEe
Confidence             44566666664

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=99.33  E-value=6e-12  Score=81.54  Aligned_cols=73  Identities=18%  Similarity=0.285  Sum_probs=51.1

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      +.|.|.+.+ .|.+.+.|++++..+.... ....+.....  ...+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g~~i~~~~~~~~~~~~~~~--~~~~~L~I~~~~~~DsG~Y~C~a~N~~g~~~~~~~   75 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNGKEIGAKNKPDNKIKIRKK--KKSSELQISKASLADNGEYKCMVSSKLGNDSVTAN   75 (76)
T ss_pred             CEEEEecccCCCCCceEEEECCcccccCCCCCceEEEEeC--CcEEEEEECcCCcccCEEEEEEEEeCCCceeEEEe
Confidence            469999875 6889999999754432221 1111111111  12358999999999999999999999998887765

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=99.33  E-value=1.9e-11  Score=84.83  Aligned_cols=97  Identities=16%  Similarity=0.195  Sum_probs=66.3

Q ss_pred             CCCceecCCcc--eEE--EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe--C-CceeEEEEEe
Q psy15734         20 DMPRFAEPVAN--VTA--TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF--N-DHRSWFLHLR   92 (314)
Q Consensus        20 ~~p~~~~~~~~--~~v--~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~-~~~~~~L~i~   92 (314)
                      .+|.|..++..  +..  ..|.++.|.|.+.+.|.+.+.|+++ +..+..       .+.++....  . ....+.|.|.
T Consensus         3 ~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i~W~k~-g~~l~~-------~~~r~~~~~~~~~~~~~s~L~I~   74 (109)
T cd05773           3 FAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQFRWAKN-GVPLDL-------GNPRYEETTEHTGTVHTSILTII   74 (109)
T ss_pred             cccccccCCceEEEEEecCCCCEEEEEEECcccCCCEEEEEEC-CEECCC-------CCCeEEEEeeccCccceeEEEEC
Confidence            46777776652  222  2457899999999999999999994 443321       122332211  1 1113479999


Q ss_pred             eec-CCCCeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734         93 DVQ-ETDRGWYMCQINTV-PMTSQKGYLQVVVPP  124 (314)
Q Consensus        93 ~~~-~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p  124 (314)
                      ++. .+|.|.|+|.+.|. |.....+.|.|..+|
T Consensus        75 ~v~~~~D~G~Y~C~A~N~~G~~~~~i~L~~~~~p  108 (109)
T cd05773          75 NVSAALDYALFTCTAHNSLGEDSLDIQLVSTSRP  108 (109)
T ss_pred             cCCccCCCEEEEEEEEeCCccCcEEEEEEecCCC
Confidence            997 69999999999876 566778888888766

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=99.33  E-value=2.3e-11  Score=82.06  Aligned_cols=79  Identities=16%  Similarity=0.198  Sum_probs=56.8

Q ss_pred             CCceecCCcceEEE---cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734         21 MPRFAEPVANVTAT---VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E   96 (314)
Q Consensus        21 ~p~~~~~~~~~~v~---~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~   96 (314)
                      .|.|+..|..+.+.   +|+++.|.|.+.|.|.+.+.|++++ ..+..      ..+.++.+..     +.|.|.++. .
T Consensus         1 ~P~f~~~p~~~~~~~~~~g~~v~l~C~~~G~P~P~i~W~k~g-~~l~~------~~~~~~~~~~-----g~L~i~~~~~~   68 (94)
T cd05848           1 GPVFVQEPDDAIFPTDSDEKKVILNCEARGNPVPTYRWLRNG-TEIDT------ESDYRYSLID-----GNLIISNPSEV   68 (94)
T ss_pred             CCeeEECCCcEEccCCCCCCEEEEEEEeeecCCCEEEEEECC-eECcc------CCCceEEeeC-----CeEEEccCCcc
Confidence            47888888887665   4689999999999999999999954 33321      1112222211     279999875 6


Q ss_pred             CCCeEEEEEEecCCC
Q psy15734         97 TDRGWYMCQINTVPM  111 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~  111 (314)
                      +|+|.|+|.+.|..+
T Consensus        69 ~D~G~Y~C~A~N~~G   83 (94)
T cd05848          69 KDSGRYQCLATNSIG   83 (94)
T ss_pred             CcCEEEEEEEEcCCC
Confidence            999999999987643

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd05748 Ig_Titin_like Immunoglobulin (Ig)-like domain of titin and similar proteins

Probab=99.32  E-value=1.9e-11  Score=78.71  Aligned_cols=72  Identities=17%  Similarity=0.195  Sum_probs=51.5

Q ss_pred             cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734         38 EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG  116 (314)
Q Consensus        38 ~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~  116 (314)
                      .+.|.|.+.|.|.+.+.|++++. .+        ..+.++.+...+ ....|.|.+++.+|+|.|+|.+.|. |..+..+
T Consensus         1 ~~~l~c~~~G~P~p~v~W~k~g~-~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   70 (74)
T cd05748           1 SVRLEVPISGRPTPTVTWSKDGK-PL--------KLSGRVQIETTA-SSTSLVIKNAERSDSGKYTLTLKNPAGEKSATI   70 (74)
T ss_pred             CEEEEeeEeeeCCCeEEEEECCE-Ec--------CCCCeEEEEECC-CeEEEEECCCCcCcCEEEEEEEECCCccEEEEE
Confidence            47899999999999999999553 22        223344444332 2347999999999999999999875 4444444


Q ss_pred             EEE
Q psy15734        117 YLQ  119 (314)
Q Consensus       117 ~l~  119 (314)
                      .|.
T Consensus        71 ~l~   73 (74)
T cd05748          71 NVK   73 (74)
T ss_pred             EEE
Confidence            444

Ig_Titin_like: immunoglobulin (Ig)-like domain found in titin-like proteins. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic, depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone. It appears to function similarly to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching. Within the sarcomere, titin is also attached to or is associated with myosin binding protein C (MyBP-C). MyBP-C appears to contribute to the generation of passive tension by titin, and similar to titin has repeated Ig-like and FN-

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=99.32  E-value=2.5e-11  Score=81.56  Aligned_cols=77  Identities=19%  Similarity=0.229  Sum_probs=56.1

Q ss_pred             CCceecCCcceEEEcCC---cEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734         21 MPRFAEPVANVTATVGK---EALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E   96 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~---~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~   96 (314)
                      .|.|..+|..+.+.++.   .+.|.|.+.|.|.+.+.|++++. .+.       ....++.+.     ++.|.|.++. .
T Consensus         1 ~P~f~~~P~~~~~~~~~~~~~v~l~C~a~G~P~P~i~W~k~~~-~i~-------~~~~~~~~~-----~g~L~I~~~~~~   67 (93)
T cd05849           1 GPVFEEQPIDTIYPEESTEGKVSVNCRARANPFPIYKWRKNNL-DID-------LTNDRYSMV-----GGNLVINNPDKY   67 (93)
T ss_pred             CCEEEECCCCEEecCCccCCeEEEeCcCccCCCCEEEEEECCE-Ecc-------CCCCeEEEE-----CCEEEECcCCcC
Confidence            47788887777665544   79999999999999999999543 221       112233332     1379999985 6


Q ss_pred             CCCeEEEEEEecCC
Q psy15734         97 TDRGWYMCQINTVP  110 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~  110 (314)
                      +|+|.|.|.+.|..
T Consensus        68 ~D~G~Y~C~A~N~~   81 (93)
T cd05849          68 KDAGRYVCIVSNIY   81 (93)
T ss_pred             CCCEEEEEEEEeCc
Confidence            99999999998763

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.32  E-value=1.6e-11  Score=79.44  Aligned_cols=76  Identities=18%  Similarity=0.188  Sum_probs=56.0

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      |.+...|+...+.+|++++|.|.+.+.+. ..+.|++++ ..+.        .+           ...|.|.++ .+|+|
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~~~~~W~kng-~~l~--------~~-----------~~~l~i~~~-~~dsG   59 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQNSTQWYHNG-KLLE--------TT-----------TNSYRIRAA-NNDSG   59 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCCccEEEEECC-EEee--------cc-----------CCeEEEeec-ccCCE
Confidence            45667888899999999999999988664 579999954 3321        01           126999999 99999


Q ss_pred             EEEEEEecCCCcceeEEEE
Q psy15734        101 WYMCQINTVPMTSQKGYLQ  119 (314)
Q Consensus       101 ~Y~C~~~~~~~~~~~~~l~  119 (314)
                      .|+|.+.+. ..+..+.|.
T Consensus        60 ~Y~C~a~~~-~~S~~v~l~   77 (78)
T cd05752          60 EYRCQTQGS-SLSDPVHLE   77 (78)
T ss_pred             EeEEECCCC-cCCCCEEEe
Confidence            999999653 344444443

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05743 Ig_Perlecan_D2_like Immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2

Probab=99.32  E-value=1.5e-11  Score=80.04  Aligned_cols=64  Identities=30%  Similarity=0.471  Sum_probs=49.1

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      |+++.|.|.+.+.|.+.+.|++++..         ...+.++.+...+ ..+.|.|.+++.+|+|.|+|.+.|.
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~~~~~~---------~~~~~~~~~~~~~-~~~~L~I~~v~~~D~G~Y~C~a~N~   64 (78)
T cd05743           1 GETVEFTCVATGVPTPIINWRLNWGH---------VPDSARVSITSEG-GYGTLTIRDVKESDQGAYTCEAINT   64 (78)
T ss_pred             CCEEEEEEEEEEecCCEEEEEECCeE---------CCCCCCEEEEECC-CEEEEEECCCChHHCEEEEEEEEec
Confidence            78999999999999999999995432         1223455444332 2347999999999999999999765

Ig_Perlecan_D2_like: the immunoglobulin (Ig)-like domain II (D2) of the human basement membrane heparan sulfate proteoglycan perlecan, also known as HSPG2. Perlecan consists of five domains. Domain I has three putative heparan sulfate attachment sites; domain II has four LDL receptor-like repeats, and one Ig-like repeat; domain III resembles the short arm of laminin chains; domain IV has multiple Ig-like repeats (21 repeats in human perlecan); and domain V resembles the globular G domain of the laminin A chain and internal repeats of EGF. Perlecan may participate in a variety of biological functions including cell binding, LDL-metabolism, basement membrane assembly and selective permeability, calcium binding, and growth- and neurite-promoting activities.

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.32  E-value=6.2e-12  Score=83.70  Aligned_cols=76  Identities=18%  Similarity=0.231  Sum_probs=57.4

Q ss_pred             CCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        182 NQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .....+.+|+.+.|.|.. .|.|.+.+.|++++...........+....+|     .|.|.+++.+|+|.|+|.|.|...
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~~~~d~r~~~~~~~G-----~L~fs~v~~~D~g~Y~C~A~n~~~   84 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNFIPEDGRRFVSQTNG-----NLYIAKVEASDRGNYSCFVSSPSS   84 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccccccCCCeEEeCCCC-----cEEEeecCHhhCceeEEEEEeccc
Confidence            345678999999999966 78999999999975433222222223333456     999999999999999999999875


Q ss_pred             Cc
Q psy15734        261 ET  262 (314)
Q Consensus       261 ~~  262 (314)
                      ..
T Consensus        85 ~~   86 (96)
T cd05727          85 TK   86 (96)
T ss_pred             CC
Confidence            44

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=99.32  E-value=4.9e-11  Score=80.48  Aligned_cols=79  Identities=18%  Similarity=0.197  Sum_probs=57.2

Q ss_pred             CCceecCCcceEEEcC---CcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734         21 MPRFAEPVANVTATVG---KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E   96 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~   96 (314)
                      .|.|...|..+.+.+|   +++.|.|.+.+.|.+.+.|++++ ..+..      ..+.++.+..     +.|.|.++. .
T Consensus         1 ~P~f~~~P~~~~~~~~~~g~~v~l~C~a~g~P~p~i~W~~~g-~~l~~------~~~~~~~~~~-----g~L~I~~~~~~   68 (94)
T cd05850           1 GPVFEEQPSSLLFPEGSPEEKVTLGCRARASPPATYRWKMNG-TEIKF------APESRYTLVA-----GNLVINNPQKA   68 (94)
T ss_pred             CCeeEECCCCEEecCCCCCCeEEEEeEceeCCCCEEEEEECC-EECcc------CCCceEEEEC-----CeEEEccCCcc
Confidence            3778888888877776   57999999999999999999954 33321      1122333322     279998865 6


Q ss_pred             CCCeEEEEEEecCCC
Q psy15734         97 TDRGWYMCQINTVPM  111 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~  111 (314)
                      .|+|.|+|.+.|..+
T Consensus        69 ~D~G~Y~C~A~N~~G   83 (94)
T cd05850          69 RDAGSYQCLAINRCG   83 (94)
T ss_pred             CcCEEEEEEEEcCcC
Confidence            999999999987643

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>PHA03376 BARF1; Provisional

Probab=99.31  E-value=1.3e-10  Score=84.60  Aligned_cols=132  Identities=22%  Similarity=0.381  Sum_probs=82.6

Q ss_pred             ceEEEcCCcEEEEEEec---CCCceEEEEEEcCc---eeEEEe-eee----eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         30 NVTATVGKEALMACVVE---NLREYKVAWVKMIT---QTILSI-HHK----VVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~---~~~~~~v~W~~~~~---~~~~~~-~~~----~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .+.+..|+++.|+|...   ..+...|.|+|.+.   .-.... ...    .+...+++.+..+. ++.+|.|.+++.+|
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~-gnvsLvI~~l~lSD   98 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISH   98 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC-CeEEEEEEeeeecC
Confidence            67788999999999985   24668999999422   111111 111    12233455554433 56789999999999


Q ss_pred             CeEEEEEEecCCCccee-EEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCC
Q psy15734         99 RGWYMCQINTVPMTSQK-GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG  164 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~-~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~  164 (314)
                      .|.|+|.+......... -.|.+..|-.+.......  ....-+...+.|.+.|+|.|.+.|....|
T Consensus        99 dGtY~C~fQkge~~~~k~ehLt~V~~~~Lsv~a~~~--dFp~~~~~~i~C~sggfP~P~~~Wle~~~  163 (221)
T PHA03376         99 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERS--QFPDFSVLTVTCTVNAFPHPHVQWLMPEG  163 (221)
T ss_pred             CceEEEEEEcCCCceeeeeeeeeeecceEEEEeccc--cCCCCCeeEEEEecCCcCCchheeccccC
Confidence            99999999654322222 234443333332221000  11225677899998889999999998544

>cd04974 Ig3_FGFR Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR)

Probab=99.31  E-value=9e-12  Score=83.44  Aligned_cols=79  Identities=23%  Similarity=0.325  Sum_probs=52.8

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcC---ceeEEEeeeeeeecCcCEEEEeC------CceeEEEEEeeecCCCCeEEEEEE
Q psy15734         36 GKEALMACVVENLREYKVAWVKMI---TQTILSIHHKVVTQNKRVSITFN------DHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~---~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      |++++|.|.+.+.|.|.+.|+|.+   +..+..      ...........      ......|.|.+++.+|+|.|+|.+
T Consensus         1 G~~v~l~C~v~g~P~P~i~W~k~~~~~g~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A   74 (90)
T cd04974           1 GSDVEFHCKVYSDAQPHIQWLKHVEVNGSKYGP------DGLPYVTVLKVAGINTTDNESEVLYLRNVSFDDAGEYTCLA   74 (90)
T ss_pred             CCcEEEEEEEeCCCCCeEEEEEecccCCceeCC------CCCceEEEEEecCCcccccccceEEEeccccccCcEEEEEe
Confidence            688999999999999999999953   111110      00011111110      011237999999999999999999


Q ss_pred             ecC-CCcceeEEEEE
Q psy15734        107 NTV-PMTSQKGYLQV  120 (314)
Q Consensus       107 ~~~-~~~~~~~~l~v  120 (314)
                      .|. |.....+.|.|
T Consensus        75 ~N~~G~~~~sa~L~V   89 (90)
T cd04974          75 GNSIGPSHHSAWLTV   89 (90)
T ss_pred             ecccCcccCCEEEEe
Confidence            876 55666677766

Ig3_FGFR: third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor (FGFR). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs.

>cd05868 Ig4_NrCAM Fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule)

Probab=99.30  E-value=1.2e-11  Score=79.97  Aligned_cols=74  Identities=14%  Similarity=0.272  Sum_probs=52.8

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.|.|.+.+.|+++ +..+...      ...... ..++   ..|.|.+++.+|+|.|+|.+.|. +....
T Consensus         1 g~~~~l~C~a~G~P~P~i~W~k~-g~~i~~~------~~~~~~-~~~~---~~l~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd05868           1 GEDGTLICRANGNPKPSISWLTN-GVPIEIA------PTDPSR-KVDG---DTIIFSKVQERSSAVYQCNASNEYGYLLA   69 (76)
T ss_pred             CCCEEEEEEeeEeCCCeEEEEEC-CEEcccc------CCCceE-EecC---CEEEECCCCHhhCEEEEEEEEcCCCEEEE
Confidence            78899999999999999999994 4433210      111111 1111   26999999999999999999876 55666


Q ss_pred             eEEEEE
Q psy15734        115 KGYLQV  120 (314)
Q Consensus       115 ~~~l~v  120 (314)
                      .+.|.|
T Consensus        70 ~~~l~v   75 (76)
T cd05868          70 NAFVNV   75 (76)
T ss_pred             EEEEEe
Confidence            667765

Ig4_ NrCAM: fourth immunoglobulin (Ig)-like domain of NrCAM (NgCAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six IG-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.30  E-value=5.3e-11  Score=79.21  Aligned_cols=71  Identities=25%  Similarity=0.400  Sum_probs=54.0

Q ss_pred             CCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .|..+.+.+|+++.|.|.+ .+.|.+.+.|++++ ..+.       ..+.++....+    +.|.|.+++.+|+|.|+|.
T Consensus         2 ~p~~~~~~~G~~v~l~C~~~~g~p~p~i~W~k~g-~~~~-------~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~   69 (86)
T cd05724           2 EPSDTQVAVGEMAVLECSPPRGHPEPTVSWRKDG-QPLN-------LDNERVRIVDD----GNLLIAEARKSDEGTYKCV   69 (86)
T ss_pred             CCccEEEeCCCCEEEEEECCCCCCCCEEEEEECC-EECC-------CCCCCEEEccC----CEEEEeECCcccCEEEEEE
Confidence            4567889999999999998 68888999999954 3221       11334443322    3799999999999999999


Q ss_pred             EecC
Q psy15734        106 INTV  109 (314)
Q Consensus       106 ~~~~  109 (314)
                      +.|.
T Consensus        70 a~N~   73 (86)
T cd05724          70 ATNM   73 (86)
T ss_pred             EEec
Confidence            9875

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05858 Ig3_FGFR-2 Third immunoglobulin (Ig)-like domain of fibroblast growth factor receptor 2 (FGFR2)

Probab=99.30  E-value=1.8e-11  Score=82.04  Aligned_cols=83  Identities=22%  Similarity=0.321  Sum_probs=52.9

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcC---ceeEEEeeee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-
Q psy15734         36 GKEALMACVVENLREYKVAWVKMI---TQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-  109 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~---~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-  109 (314)
                      |+++.|.|.+.+.|.+.+.|++.+   +..+......  .......+..  .+.....|.|.+++.+|+|.|+|.+.|. 
T Consensus         1 G~~v~L~C~~~g~P~P~i~W~k~~~~~g~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~   78 (90)
T cd05858           1 GSTVEFVCKVYSDAQPHIQWLKHVEKNGSKYGPDGLPYVTVLKTAGVNT--TDKEMEVLYLRNVTFEDAGEYTCLAGNSI   78 (90)
T ss_pred             CCeEEEEEEEecCCCCEEEEEEecccCCcEeCCCCCeeEEEeccCCcee--cCCceeEEEEccCCHHHCEEEEEEEEeCC
Confidence            788999999999999999999843   2211100000  0000000111  1111247999999999999999999775 


Q ss_pred             CCcceeEEEEE
Q psy15734        110 PMTSQKGYLQV  120 (314)
Q Consensus       110 ~~~~~~~~l~v  120 (314)
                      |.....+.|.|
T Consensus        79 G~~~~~a~L~V   89 (90)
T cd05858          79 GISHHSAWLTV   89 (90)
T ss_pred             CcccceEEEEE
Confidence            56666667765

Ig3_FGFR-2-like; domain similar to the third immunoglobulin (Ig)-like domain of human fibroblast growth factor receptor 2 (FGFR2). Fibroblast growth factors (FGFs) participate in morphogenesis, development, angiogenesis, and wound healing. These FGF-stimulated processes are mediated by four FGFR tyrosine kinases (FGRF1-4). FGFRs are comprised of an extracellular portion consisting of three Ig-like domains, a transmembrane helix, and a cytoplasmic portion having protein tyrosine kinase activity. The highly conserved Ig-like domains 2 and 3, and the linker region between D2 and D3 define a general binding site for FGFs. FGFR2 is required for male sex determination.

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=99.29  E-value=5.5e-11  Score=80.61  Aligned_cols=84  Identities=15%  Similarity=0.192  Sum_probs=58.9

Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +...+.+|++++|.|.+.+.|.+.+.|++.++..+.       ...++......+   ....|.|.+++.+|+|.|+|.+
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v~W~~p~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C~~   81 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSLQWSNPNQQTLYFNDKRALRDNRIQLVNFSA---NELSISISNVSLSDEGRYTCSL   81 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceEEEeCCCCcEEEeccccccccCcEEEEcCCC---CeeEEEEccCCcccCEEEEEEE
Confidence            456788999999999999999999999875443221       112332211111   1348999999999999999999


Q ss_pred             eeCCCCceeEEEEEE
Q psy15734        256 VNALGETDGFIKVYV  270 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V  270 (314)
                      .+... ...++.|.|
T Consensus        82 ~~~~~-~~~~~~~~v   95 (95)
T cd05717          82 YTMPV-QTAKATVTV   95 (95)
T ss_pred             ecCCC-ceEEEEEEC
Confidence            98653 466666654

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd05863 Ig2_VEGFR-3 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3)

Probab=99.28  E-value=2.2e-11  Score=75.88  Aligned_cols=65  Identities=18%  Similarity=0.268  Sum_probs=48.4

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      ++|.|.+.|.|.|.+.|+|+ +..+..          +       .....|.|.++..+|+|.|+|.+.|. +..++...
T Consensus         1 ~~l~c~v~g~P~P~v~W~kd-g~~l~~----------~-------~~~~~L~i~~v~~~D~G~YtC~a~N~~g~~~~~~~   62 (67)
T cd05863           1 VKLPVKVAAYPPPEFQWYKD-GKLISG----------K-------HSQHSLQIKDVTEASAGTYTLVLWNSAAGLEKRIS   62 (67)
T ss_pred             CEEEEEEEEeCCCEEEEEEC-CEECcc----------c-------CCcCEEEECCCCHHHCEEEEEEEEECCccEEEEEE
Confidence            47999999999999999995 443310          0       01127999999999999999999876 54455556


Q ss_pred             EEEE
Q psy15734        118 LQVV  121 (314)
Q Consensus       118 l~v~  121 (314)
                      +.|.
T Consensus        63 ~~l~   66 (67)
T cd05863          63 LELI   66 (67)
T ss_pred             EEEE
Confidence            6553

Ig2_VEGFR-3: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 3 (VEGFR-3). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-3 (Flt-4) binds two members of the VEGF family (VEGF-C and -D) and is involved in tumor angiogenesis and growth.

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=99.28  E-value=1.2e-10  Score=79.47  Aligned_cols=89  Identities=16%  Similarity=0.197  Sum_probs=60.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCC---ceeEEEEEeeecCC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFND---HRSWFLHLRDVQET   97 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~   97 (314)
                      |.++..+....+.+|+++.|.|.+.+.|.+ .+.|++++ ..+..      ..+.++.+....   .....|.|.+++.+
T Consensus         2 pp~i~~~~~~~~~~G~~v~L~C~~~g~P~P~~v~W~~~~-~~i~~------~~~~r~~i~~~~~~~~~~s~L~I~~v~~~   74 (98)
T cd05758           2 PPIITSEATQYAILGDKGRVECFIFSTPPPDRIVWTWKE-NELES------GSSGRYTVETDPSPGGVLSTLTISNTQES   74 (98)
T ss_pred             CCeEcCCCcEEEeCCCcEEEEEEEcccCCCCEeEEEECC-EEccC------CCCCCEEEEEecCCCceEEEEEECCcccc
Confidence            333455667789999999999999998888 69999954 33221      112355444321   12247999999995


Q ss_pred             C-CeEEEEEEecC-CCcceeEE
Q psy15734         98 D-RGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        98 d-~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      | .|.|+|.+.|. |.....+.
T Consensus        75 d~~G~Y~C~A~N~~G~~~~~~~   96 (98)
T cd05758          75 DFQTSYNCTAWNSFGSGTAIIS   96 (98)
T ss_pred             ccceeEEEEEEcCCCcccEEEE
Confidence            5 89999999875 44444443

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05764 Ig_2 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.27  E-value=5.7e-11  Score=76.53  Aligned_cols=72  Identities=18%  Similarity=0.235  Sum_probs=51.5

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+.+.|.|.+.+.|.+.+.|++.++..+.        ...+......    ++|.|.+++.+|.|.|+|.+.|. +..+.
T Consensus         1 G~~~~l~C~~~g~P~p~v~W~~~~~~~~~--------~~~~~~~~~~----~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~   68 (74)
T cd05764           1 GQRATLRCKARGDPEPAIHWISPDGKLIS--------NSSRTLVYDN----GTLDILITTVKDTGSFTCIASNAAGEATA   68 (74)
T ss_pred             CCeEEEEEEccCcCCCEEEEEeCCCEEec--------CCCeEEEecC----CEEEEEECChhhCEEEEEEEECCCCeEEE
Confidence            78999999999999999999986654332        1222222222    27999999999999999999875 44444


Q ss_pred             eEEEE
Q psy15734        115 KGYLQ  119 (314)
Q Consensus       115 ~~~l~  119 (314)
                      .+.|.
T Consensus        69 ~~~l~   73 (74)
T cd05764          69 TVELH   73 (74)
T ss_pred             EEEEE
Confidence            44443

Ig_2: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.27  E-value=1.8e-11  Score=80.41  Aligned_cols=74  Identities=18%  Similarity=0.180  Sum_probs=54.7

Q ss_pred             cceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        184 LEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ...+.+|++++|.|.+.+ .+.+.+.|++++.. +...       ..+     +.|.|.+++.+|+|.|+|.+.|..|..
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~~-~~~~-------~~~-----~~l~I~~~~~~dsG~Y~C~~~~~~~~~   74 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGKA-KKYS-------HSN-----SNLSIPQATLSDSGSYHCSGIIGSYDY   74 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCeE-cccc-------CCC-----ceEEECccCHHHCEEEEEEEEeCCcee
Confidence            346899999999999954 66778999997532 2110       111     389999999999999999999998744


Q ss_pred             -eeEEEEEE
Q psy15734        263 -DGFIKVYV  270 (314)
Q Consensus       263 -~~~~~l~V  270 (314)
                       +..+.|+|
T Consensus        75 ~s~~~~i~~   83 (83)
T cd05753          75 SSEPVSITV   83 (83)
T ss_pred             cCCCEEEEC
Confidence             44555443

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.27  E-value=2.7e-11  Score=79.51  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=53.2

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .|.+..+..|+++.|.|.+.+ |.+.+.|++++..+.....++.   ..++     .|.|.+++.+|+|.|+|.|.+..
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~ng~~i~~~~~r~~---~~~~-----~L~I~nv~~~DsG~Y~C~a~e~~   71 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFDGKVLTPESAKYL---LYRD-----GLLIFNASEADAGRYQCLSVEKS   71 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEECCEECCCCCceEE---EECC-----cEEEeCCCHHHCEEEEEEEEecc
Confidence            356678899999999999864 6789999997443332223332   2334     89999999999999999998864

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG3515|consensus

Probab=99.26  E-value=1.4e-10  Score=102.90  Aligned_cols=289  Identities=13%  Similarity=0.148  Sum_probs=158.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEec--CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~--~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ..+|.-...........+..+.+.|...  +.+.+.+.|..+................. ...... .....|.+...+.
T Consensus        95 ~~~pa~~~~~~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~-a~gss~-t~~s~l~~~v~Rk  172 (741)
T KOG3515|consen   95 DYPPACLPELGEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAG-ALGSSY-TEPSLLKQTVSRK  172 (741)
T ss_pred             ccCccccccccchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCccccccc-ccCcee-ccccceeeEEEEe
Confidence            3344433444556667788899999663  46778999998543222211111110100 000000 0112588899999


Q ss_pred             CCCeEEEEEEecC--CCccee--EEEEEEeCCc-eeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecC
Q psy15734         97 TDRGWYMCQINTV--PMTSQK--GYLQVVVPPR-ILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYN  170 (314)
Q Consensus        97 ~d~G~Y~C~~~~~--~~~~~~--~~l~v~~~p~-~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~  170 (314)
                      +|.|+|+|.+.+.  ......  ..+.|..+.. +............+|+.+.|.|.+. |+|.+.+.|++. .......
T Consensus       173 a~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~~~w~~~-s~~~~~~  251 (741)
T KOG3515|consen  173 ADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQQTWYKD-SRPQSES  251 (741)
T ss_pred             cCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchhhhhccc-cccchhh
Confidence            9999999999653  222222  2333333222 1111112224577899999999765 579999999994 4333221


Q ss_pred             --------CeeC------------------------------------CCeEEcCCCcceeecCccEEEEEEE-eecCCc
Q psy15734        171 --------GELV------------------------------------PPMLTIPNQLEGAFVSQTVELHCHT-EAFPAS  205 (314)
Q Consensus       171 --------~~~~------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p  205 (314)
                              +...                                    +-...+.+....+..|++..+.|.. .++|++
T Consensus       252 sl~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n~~~~~~~tav~~~~~~~~Ist~~~~ls~g~s~r~~c~~sss~p~~  331 (741)
T KOG3515|consen  252 SLLSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASNLLAASQITAVQVKPTAVPISTSDSGLSSGRSARSSCVSSSSKPPA  331 (741)
T ss_pred             hcccCCCCCCcccccccccccccchhhhhhccccCccccceeeecccccccccccCcccccccccccccceeccCCCCcc
Confidence                    0000                                    1111122334457789999999866 568888


Q ss_pred             eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCee-EEEEc-
Q psy15734        206 LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIF-QIRKM-  283 (314)
Q Consensus       206 ~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~-~~~~~-  283 (314)
                      .+.|+++. ................+......+........|.|.|+|.+.|.......+..+.+...+.+.+ ..... 
T Consensus       332 ~i~w~~~~-~~~~~~~~~~~~t~~~~~v~~~~~~~q~~~~~~~g~v~c~a~~~~~~~~sss~~~l~~l~~p~~L~~~~~~  410 (741)
T KOG3515|consen  332 HIAWYKDT-KMPKGSQKASSKTSNMGGVAVISHYAQPSSQQDGGQVTCPADNLELAHSSSSSFLLPVLPSPAFLVRHKTA  410 (741)
T ss_pred             ceeeeccC-cccccccCcccCCCcccceeeEEeeecccchhcCceEEccccccccccccccceeccccCCchhhhhcccc
Confidence            99999953 3332222111111122222233555667778899999999999886655555554544443332 22211 


Q ss_pred             ---cccccEeEEEEE-eeccCCCccceEEEEE
Q psy15734        284 ---SRLHMGAYLCIA-SNGVVPSVSHRIMVTV  311 (314)
Q Consensus       284 ---~~~~~g~~~C~a-~~~~~~~~~w~v~l~v  311 (314)
                         ...+.+.+.-.+ .+++.+.+.|.+.+.-
T Consensus       411 v~~~e~d~~~~~~~~~~~p~~~~~~w~~~~~~  442 (741)
T KOG3515|consen  411 VVAMEQDHQAAPLPVRGAPAERTFYWTFRLYK  442 (741)
T ss_pred             eeeccCccccccCcccCCCcccchhheeccee
Confidence               122222222222 4556779999887653

>cd05756 Ig1_IL1R_like First immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.26  E-value=3.2e-11  Score=81.10  Aligned_cols=81  Identities=15%  Similarity=0.213  Sum_probs=55.2

Q ss_pred             cceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         29 ANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      ....+.+|+.+.|.|.+.+     .|.+.+.|||++......     ...+.++..  .   .+.|.|.+++.+|+|.|+
T Consensus         7 ~~~~v~~G~~~~L~C~~~g~~~~~~p~~~v~Wyk~~~~~~~~-----~~~~~r~~~--~---~~~L~I~~~~~~DsG~Y~   76 (94)
T cd05756           7 KKSYVLEGEPVVIKCPLFYSYIAQSPGLNLTWYKSDGKTPIP-----TEERSRMHQ--Q---KDLLWFLPAALEDSGLYT   76 (94)
T ss_pred             eEEEEecCCCeEEECCCCCcccccCCCceEEEEEcCCCCccc-----ccccceeee--c---CCeEEEccCCcccCeEEE
Confidence            3566889999999999988     578899999965321110     011223322  1   137999999999999999


Q ss_pred             EEEecC-CCcceeEEEE
Q psy15734        104 CQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       104 C~~~~~-~~~~~~~~l~  119 (314)
                      |.+.|. +.....+.|.
T Consensus        77 C~~~N~~g~~~~~~~L~   93 (94)
T cd05756          77 CVVRNSTYCMKVSISLT   93 (94)
T ss_pred             EEEcCCCccEEEEEEEE
Confidence            999775 3334444443

Ig1_IL1R_like: domain similar to the first immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=99.26  E-value=3.9e-11  Score=80.14  Aligned_cols=78  Identities=10%  Similarity=0.139  Sum_probs=58.2

Q ss_pred             ceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        185 EGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..+.+|.+..|.|...+     +|.|.+.|++++ ..+... .....  .++     .|.|.++..+|+|.|+|.|.|..
T Consensus         5 ~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~~~-~~~~~--~~~-----~L~I~~v~~~DsG~YtC~~~n~~   75 (92)
T cd05757           5 QILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLEGD-RKRFV--KGS-----KLLIQNVTEEDAGNYTCKLTFTH   75 (92)
T ss_pred             EEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECCCC-ccEEe--cCC-----EEEEeeCChhhCEEEEEEEEecC
Confidence            45788999999998754     267899999975 333322 22221  333     99999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy15734        260 GETDGFIKVYVN  271 (314)
Q Consensus       260 g~~~~~~~l~V~  271 (314)
                      +.....+...+.
T Consensus        76 ~~~~~~~t~t~~   87 (92)
T cd05757          76 NGKQYNVTRTIS   87 (92)
T ss_pred             CCEEEEEEEEEE
Confidence            887766655443

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>cd05763 Ig_1 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.26  E-value=4.9e-11  Score=77.01  Aligned_cols=73  Identities=22%  Similarity=0.342  Sum_probs=50.6

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      ++|.|.+.|.|.|.+.|++++.....      .....++.+...+   ..|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 a~l~C~~~G~P~P~v~W~k~~~~~~~------~~~~~~~~~~~~~---~~L~I~~~~~~D~G~Y~C~A~N~~G~~~~~~~   71 (75)
T cd05763           1 ARLECAATGHPTPQIAWQKDGGTDFP------AARERRMHVMPED---DVFFIVDVKIEDTGVYSCTAQNTAGSISANAT   71 (75)
T ss_pred             CEeEeecccccCCEEEEEeCCCccCC------cccccceEEecCC---CEEEEeeCCcccCEEEEEEEEcCCCEEEeeEE
Confidence            47999999999999999996543211      1122344332221   27999999999999999999875 44455556


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      |.|
T Consensus        72 l~V   74 (75)
T cd05763          72 LTV   74 (75)
T ss_pred             EEE
Confidence            655

Ig_1: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=99.26  E-value=1.4e-10  Score=78.65  Aligned_cols=75  Identities=21%  Similarity=0.327  Sum_probs=53.8

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee-----cCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV-----QETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-----~~~d   98 (314)
                      |...|....+.+|+++.|.|.+.+.|.+.+.|+|++ ..+..      ..+.+..+..+    +.|.|.++     +.+|
T Consensus         2 f~~~P~~~~~~~g~~v~l~C~v~g~P~p~i~W~k~g-~~l~~------~~~~~~~~~~~----~~l~i~~v~~~~~~~~D   70 (95)
T cd05722           2 FLSEPSDIVAVRGGPVVLNCSAEGEPPPKIEWKKDG-VLLNL------VSDERRQQLPN----GSLLITSVVHSKHNKPD   70 (95)
T ss_pred             cEECCCCeEEcCCCCEEEeeecccCCCCEEEEEECC-eECcc------ccCcceEEccC----CeEEEeeeeccCCCCCc
Confidence            455677888999999999999999999999999944 43321      11112222222    25667666     5899


Q ss_pred             CeEEEEEEecC
Q psy15734         99 RGWYMCQINTV  109 (314)
Q Consensus        99 ~G~Y~C~~~~~  109 (314)
                      .|.|+|.+.|.
T Consensus        71 ~G~Y~C~a~N~   81 (95)
T cd05722          71 EGFYQCVAQND   81 (95)
T ss_pred             CEEEEEEEECC
Confidence            99999999876

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd04978 Ig4_L1-NrCAM_like Fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related)

Probab=99.25  E-value=3.8e-11  Score=77.85  Aligned_cols=74  Identities=19%  Similarity=0.303  Sum_probs=51.7

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      |+++.|.|.+.+.|.+.+.|++++ ..+...       ........   ....|.|.+++.+|+|.|+|.+.|. +....
T Consensus         1 G~~~~l~C~~~g~P~p~i~W~~~g-~~~~~~-------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~   69 (76)
T cd04978           1 GETGRLDCEAEGIPQPTITWRLNG-VPIEEL-------PPDPRRRV---DGGTLILSNVQPNDTAVYQCNASNVHGYLLA   69 (76)
T ss_pred             CCeEEEEEEceeeCCCEEEEEECC-EECCCC-------CCcceEEc---cCCEEEECCCChhhCEEEEEEEEccCCeEEE
Confidence            789999999999999999999954 332211       11111111   1137999999999999999999875 55555


Q ss_pred             eEEEEE
Q psy15734        115 KGYLQV  120 (314)
Q Consensus       115 ~~~l~v  120 (314)
                      .+.|.|
T Consensus        70 ~~~l~V   75 (76)
T cd04978          70 NAFVHV   75 (76)
T ss_pred             eEEEEE
Confidence            556654

Ig4_L1-NrCAM_like: fourth immunoglobulin (Ig)-like domain of L1, Ng-CAM (Neuron-glia CAM cell adhesion molecule), and NrCAM (Ng-CAM-related). These proteins belong to the L1 subfamily of cell adhesion molecules (CAMs) and are comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. These molecules are primarily expressed in the nervous system. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05725 Ig3_Robo Third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=99.25  E-value=5.8e-11  Score=75.31  Aligned_cols=67  Identities=22%  Similarity=0.310  Sum_probs=48.5

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      ++|.|.+.+.|.+.+.|+++++. +         ...++.+...    +.|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~-~---------~~~~~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   66 (69)
T cd05725           1 VEFQCEVGGDPVPTVLWRKEDGE-L---------PKGRAEILDD----KSLKIRNVTAGDEGSYTCEAENMVGKIEASAS   66 (69)
T ss_pred             CEEEEECccCCCCEEEEEECCcc-C---------CCCcEEEeeC----CEEEECcCChhHCEEEEEEEEcCCCcEEEEEE
Confidence            57999999999999999996432 1         2234444322    27999999999999999999875 44444444


Q ss_pred             EE
Q psy15734        118 LQ  119 (314)
Q Consensus       118 l~  119 (314)
                      |.
T Consensus        67 l~   68 (69)
T cd05725          67 LT   68 (69)
T ss_pred             EE
Confidence            44

Ig3_Robo: domain similar to the third immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antagoni

>cd04976 Ig2_VEGFR Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR)

Probab=99.24  E-value=3.7e-11  Score=76.47  Aligned_cols=69  Identities=19%  Similarity=0.287  Sum_probs=48.4

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.|.|.+.+.|+|+ +..+..        +.++..  .   ...|.|.+++.+|+|.|+|.+.|. +.......
T Consensus         1 ~~l~c~v~g~P~p~v~W~k~-g~~l~~--------~~~~~~--~---~~~L~I~~v~~~D~G~YtC~a~N~~g~~~~~~~   66 (71)
T cd04976           1 VRLPVKVKAYPPPEIQWYKN-GKLISE--------KNRTKK--S---GHSLTIKDVTEEDAGNYTVVLTNKQAKLEKRLT   66 (71)
T ss_pred             CEEEeEEEEeCCCEEEEEEC-CEECCC--------CCEEEc--C---CCEEEECcCCHHHCEEEEEEEEcCCccEEEEEE
Confidence            47999999999999999994 443321        112211  1   137999999999999999999875 34455555


Q ss_pred             EEEE
Q psy15734        118 LQVV  121 (314)
Q Consensus       118 l~v~  121 (314)
                      +.|.
T Consensus        67 ~~~~   70 (71)
T cd04976          67 FTLV   70 (71)
T ss_pred             EEEE
Confidence            5543

Ig2_VEGFR: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor (VEGFR). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A. VEGFR-1 may play an inhibitory part in these processes by binding VEGF and interfering with its interaction with VEGFR-2. VEGFR-1 has a signa

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=99.24  E-value=3.2e-11  Score=79.50  Aligned_cols=78  Identities=17%  Similarity=0.389  Sum_probs=53.6

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+.+..|+++.|.|.+.+.|.+.+.|++++.. +..        .....   .....+.|.|.+++.+|+|.|+|.+.|.
T Consensus         3 ~~~~~~G~~v~L~C~~~g~p~p~i~W~k~~~~-~~~--------~~~~~---~~~~~~~L~i~~v~~~D~G~Y~C~a~N~   70 (82)
T cd05856           3 VIARPVGSSVRLKCVASGNPRPDITWLKDNKP-LTP--------TEIGE---SRKKKWTLSLKNLKPEDSGKYTCHVSNR   70 (82)
T ss_pred             ceeccCCCeEEEEEEeeEeCCCcEEEEECCcC-CcC--------Cccce---ecCceEEEEEccCChhhCEEEEEEEEcC
Confidence            34567899999999999988899999995532 211        11111   0112247999999999999999999775


Q ss_pred             -CCcceeEEEE
Q psy15734        110 -PMTSQKGYLQ  119 (314)
Q Consensus       110 -~~~~~~~~l~  119 (314)
                       +..+..+.|.
T Consensus        71 ~G~~~~~~~v~   81 (82)
T cd05856          71 AGEINATYKVD   81 (82)
T ss_pred             CccEEEEEEEe
Confidence             4344444443

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.23  E-value=1e-10  Score=78.08  Aligned_cols=78  Identities=21%  Similarity=0.257  Sum_probs=56.5

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeee-e----cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe-eC
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-I----TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV-NA  258 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~-n~  258 (314)
                      +.+.+|+++.|.|.. +.|.|.+.|++.+.... .    ...++.   ..++     .|.|.++..+|+|.|+|.|. |.
T Consensus         6 ~~~~eG~~v~L~C~~-~~p~p~v~Wykq~~g~~~~~~~~~~~r~~---~~~~-----~L~I~~~~~~DsG~Y~C~a~~~~   76 (91)
T cd05871           6 VYGVENNSTFLECLP-KSPQASVKWLFQRGGDQRKEEVKTEERLI---HTER-----GLLLRSLQRSDAGVYTCTAVEHS   76 (91)
T ss_pred             EEEecCCcEEEEEEC-CCCCceEEEEEECCCCCccccccccccEE---EecC-----eEEEeeCChhHCEEEEEEEEccC
Confidence            457789999999997 58999999998432111 1    111221   1222     79999999999999999998 56


Q ss_pred             CCCceeEEEEEEE
Q psy15734        259 LGETDGFIKVYVN  271 (314)
Q Consensus       259 ~g~~~~~~~l~V~  271 (314)
                      .+.....++|+|.
T Consensus        77 ~~~~~~~~~l~v~   89 (91)
T cd05871          77 FSQTLAKYTLHVI   89 (91)
T ss_pred             CeEEEEEEEEEEe
Confidence            6666777777775

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05746 Ig4_Peroxidasin Fourth immunoglobulin (Ig)-like domain of peroxidasin

Probab=99.23  E-value=4.5e-11  Score=75.73  Aligned_cols=65  Identities=23%  Similarity=0.374  Sum_probs=47.1

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKG  116 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~  116 (314)
                      +.|.|.+.+.|.+.+.|++++ ..+        ....++.+..+    +.|.|.+++.+|+|.|+|.+.|. |..+...
T Consensus         1 v~L~C~~~g~P~p~i~W~k~g-~~~--------~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a~N~~G~~~~~~   66 (69)
T cd05746           1 VQIPCSAQGDPEPTITWNKDG-VQV--------TESGKFHISPE----GYLAIRDVGVADQGRYECVARNTIGYASVSM   66 (69)
T ss_pred             CEeEecceEeCCCEEEEEECC-EEC--------CCCCCEEECCC----CEEEECcCChhhCEEEEEEEECCCCcEEEEE
Confidence            579999999999999999954 322        22334444322    27999999999999999999875 4444433

Ig4_Peroxidasin: the fourth immunoglobulin (Ig)-like domain in peroxidasin. Peroxidasin has a peroxidase domain and interacting extracellular motifs containing four Ig-like domains. It has been suggested that peroxidasin is secreted, and has functions related to the stabilization of the extracellular matrix. It may play a part in various other important processes such as removal and destruction of cells, which have undergone programmed cell death, and protection of the organism against non-self.

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=99.23  E-value=8.1e-11  Score=77.14  Aligned_cols=78  Identities=24%  Similarity=0.405  Sum_probs=57.7

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+..++  ..+.+|+++.|.|.+.+.|.+.+.|++++ ..+.....              .|.|.++..+|.|.|+|.+
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~~~~--------------~~~~~~~~~~~~g~y~C~~   64 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNG-SPINSSQN--------------GLFIPNVSPEDSGNYTCRA   64 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETT-EEEEEESS--------------EEEESSEEGGGTEEEEEEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeee-eeeeeeee--------------eeeeeeeccccCEEEEEEE
Confidence            5555555  55899999999999999999999999964 33332111              3677888999999999999


Q ss_pred             eeCCC-CceeEEEEEE
Q psy15734        256 VNALG-ETDGFIKVYV  270 (314)
Q Consensus       256 ~n~~g-~~~~~~~l~V  270 (314)
                      .+..+ ..+..+.|+|
T Consensus        65 ~~~~~~~~s~~~~v~V   80 (80)
T PF13895_consen   65 SNGSGSNTSTSVNVTV   80 (80)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCCeEeeeEEeeC
Confidence            99664 3456666654

...

>cd05876 Ig3_L1-CAM Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.22  E-value=7.1e-11  Score=75.26  Aligned_cols=69  Identities=22%  Similarity=0.371  Sum_probs=48.0

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.|.|.+.+.|++++.. +..         .+.....   ..+.|.|.+++.+|+|.|+|.+.|. +.....+.
T Consensus         1 ~~L~C~~~G~P~P~v~W~k~~~~-~~~---------~~~~~~~---~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05876           1 LVLECIAEGLPTPEVHWDRIDGP-LSP---------NRTKKLN---NNKTLQLDNVLESDDGEYVCTAENSEGSARHHYT   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCcC-CCC---------CceeEEc---CCCEEEEcccCHHhCEEEEEEEEcCCCeEEEEEE
Confidence            47999999999999999996542 211         1111111   1237999999999999999999876 44444455


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      |.|
T Consensus        68 l~V   70 (71)
T cd05876          68 VTV   70 (71)
T ss_pred             EEE
Confidence            544

Ig3_L1-CAM: third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.21  E-value=6.4e-11  Score=78.70  Aligned_cols=73  Identities=21%  Similarity=0.138  Sum_probs=58.4

Q ss_pred             CCcceeecCccEEEEEE-EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe-EEEEEEeeCC
Q psy15734        182 NQLEGAFVSQTVELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG-SYRCVAVNAL  259 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~-~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G-~Y~C~a~n~~  259 (314)
                      ...+.+.+|+.+.|.|. ..|.|.|.+.|++++...+..  ..++....+|     .|.|.++..+|+| .|.|.|.|..
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~i~~--~~Ri~~~~~G-----nL~fs~v~~~D~g~~Y~C~a~~~~   82 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLHITQ--DERVSMGQNG-----NLYFANVEEQDSHPDYICHAHFPG   82 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEEEEECCCCccccc--cccEEECCCc-----eEEEEEEehhhCCCCeEEEEEccc
Confidence            46678999999999997 699999999999865443332  3344555556     9999999999999 8999999986


Q ss_pred             CC
Q psy15734        260 GE  261 (314)
Q Consensus       260 g~  261 (314)
                      ..
T Consensus        83 ~~   84 (95)
T cd05845          83 LR   84 (95)
T ss_pred             cc
Confidence            43

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=99.21  E-value=1.3e-10  Score=77.68  Aligned_cols=83  Identities=22%  Similarity=0.258  Sum_probs=56.1

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ++..+.+.+|+++.|.|.+.+ +.+.+.|++++.. +....    ....++....     ..|.|.+++.+|+|.|+|.+
T Consensus         2 ~~~~~~v~~g~~v~L~C~~~~-p~~~i~W~k~~~~-~~~~~----~~~~~~~~~~-----~~L~I~~~~~~D~G~Y~C~a   70 (89)
T cd04979           2 EEKVVTVVEGNSVFLECSPKS-NLASVVWLFQGGP-LQRKE----EPEERLLVTE-----DGLLIRSVSPADAGVYTCQS   70 (89)
T ss_pred             cceEEEEECCCcEEEEEeCCC-CCceEEEEECCcc-ccccc----CcCceEEEcC-----CCEEEccCCHHHCEEEEEEE
Confidence            456788999999999999977 7789999996543 11100    0112333322     15999999999999999999


Q ss_pred             ecCCCcce--eEEEEE
Q psy15734        107 NTVPMTSQ--KGYLQV  120 (314)
Q Consensus       107 ~~~~~~~~--~~~l~v  120 (314)
                      .+.+....  ...|.|
T Consensus        71 ~~~~~~~~~~~~~l~V   86 (89)
T cd04979          71 VEHGFKQTLATYSLNV   86 (89)
T ss_pred             ecCccceeEeEEEEEE
Confidence            76543433  344444

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05738 Ig2_RPTP_IIa_LAR_like Second immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.21  E-value=1.2e-10  Score=74.89  Aligned_cols=71  Identities=27%  Similarity=0.373  Sum_probs=49.3

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCc--ceeE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT--SQKG  116 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~--~~~~  116 (314)
                      ++|.|.+.|.|.+.+.|++++ ..+.      ...+.++....    ++.|.|.+++.+|+|.|+|.+.|..+.  +..+
T Consensus         1 a~l~C~~~G~P~p~v~W~k~~-~~~~------~~~~~~~~~~~----~g~L~i~~~~~~D~G~Y~C~a~N~~G~~~s~~a   69 (74)
T cd05738           1 ATMLCAASGNPDPEITWFKDF-LPVD------TTSNGRIKQLR----SGALQIENSEESDQGKYECVATNSAGTRYSAPA   69 (74)
T ss_pred             CEEEEEEeEecCCEEEEEECC-EECc------cCCCCCEEEcC----CcEEEECCCChhhCEEEEEEEECCCCceEcccE
Confidence            479999999999999999954 3221      11234544432    237999999999999999999876443  3344


Q ss_pred             EEEE
Q psy15734        117 YLQV  120 (314)
Q Consensus       117 ~l~v  120 (314)
                      .|.|
T Consensus        70 ~l~v   73 (74)
T cd05738          70 NLYV   73 (74)
T ss_pred             EEEE
Confidence            4443

Ig2_RPTP_IIa_LAR_like: domain similar to the second immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple Ig-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains.

>cd05864 Ig2_VEGFR-2 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2)

Probab=99.20  E-value=5.7e-11  Score=75.00  Aligned_cols=67  Identities=21%  Similarity=0.229  Sum_probs=47.2

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.|.|.+.+.|+|++ ..+..        +.++  ..    ...|.|.++..+|+|.|+|.+.|. |..+....
T Consensus         1 ~~~~c~v~G~P~P~v~W~k~g-~~l~~--------~~~~--~~----~~~L~I~~v~~~D~G~YtC~a~N~~G~~~~~~t   65 (70)
T cd05864           1 VKIPVKYYGYPPPEVKWYKNG-QLIVL--------NHTF--KR----GVHLTIYEVTEKDAGNYTVVLTNPITKEEQRHT   65 (70)
T ss_pred             CEEEeEEEEeCCCEEEEEECC-EECCC--------CCEE--cc----CCEEEECcCCHHHCEEEEEEEEECCCceeeEEE
Confidence            478999999999999999954 43321        1111  11    126999999999999999999876 43444444


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      +.+
T Consensus        66 ~~l   68 (70)
T cd05864          66 FQL   68 (70)
T ss_pred             EEE
Confidence            444

Ig2_VEGF-2: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 2 (VEGFR-2). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-2 (KDR/Flk-1) is a major mediator of the mitogenic, angiogenic and microvascular permeability-enhancing effects of VEGF-A; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF-A also interacts with VEGFR-1, which it binds more strongly than VEGFR-2. VEGFR-2 and -1 may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.20  E-value=5.8e-11  Score=79.31  Aligned_cols=76  Identities=18%  Similarity=0.177  Sum_probs=53.2

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeec-------------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT-------------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-------------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +.+.+|++++|.|.+.+.+.+.+.|++++......             .+++..... ........|+|.++..+|+|.|
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~-~~~~g~~~L~I~~l~~sDsgtY   80 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRN-LWDQGSFPLIIKNLKIEDSDTY   80 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecc-cCCCCeEEEEECCCCHHHCEEE
Confidence            35789999999999999999999999764332111             111111110 0011245899999999999999


Q ss_pred             EEEEeeCCCC
Q psy15734        252 RCVAVNALGE  261 (314)
Q Consensus       252 ~C~a~n~~g~  261 (314)
                      .|.+.|..+.
T Consensus        81 ~C~v~~~~~~   90 (94)
T cd07690          81 ICEVEDKKEE   90 (94)
T ss_pred             EEEECCccce
Confidence            9999987754

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05765 Ig_3 Subgroup of the immunoglobulin (Ig) superfamily

Probab=99.19  E-value=9.2e-11  Score=77.07  Aligned_cols=77  Identities=19%  Similarity=0.289  Sum_probs=50.4

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCc--eeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734         36 GKEALMACVVENLREYKVAWVKMIT--QTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT  112 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~  112 (314)
                      |+++.|.|.+.+.|.+.+.|++...  ..+....   .....++...    ..+.|.|.+++.+|+|.|+|.+.|. +..
T Consensus         1 G~~v~l~C~~~g~P~p~v~W~k~~~~~~~~~~~~---~~~~~~~~~~----~~~~L~I~~~~~~D~G~Y~C~a~N~~G~~   73 (81)
T cd05765           1 GETASFHCDVTGRPPPEITWEKQVHGKENLIMRP---NHVRGNVVVT----NIGQLVIYNAQPQDAGLYTCTARNSGGLL   73 (81)
T ss_pred             CCcEEEEeeccccCCCcEEEEecCCCCcceeecC---CcccCCEEEc----cccEEEEccCCcccCEEEEEEEecCCceE
Confidence            7899999999999999999999632  1111000   0001112111    1237999999999999999999875 444


Q ss_pred             ceeEEEE
Q psy15734        113 SQKGYLQ  119 (314)
Q Consensus       113 ~~~~~l~  119 (314)
                      ...+.|.
T Consensus        74 ~~~~~l~   80 (81)
T cd05765          74 RANFPLS   80 (81)
T ss_pred             EEEEEEe
Confidence            4444444

Ig_3: subgroup of the immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of the Ig superfamily are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05742 Ig1_VEGFR_like First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor (R) and similar proteins

Probab=99.18  E-value=1.3e-10  Score=76.83  Aligned_cols=80  Identities=15%  Similarity=0.182  Sum_probs=51.0

Q ss_pred             CCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734         36 GKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT  112 (314)
Q Consensus        36 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~  112 (314)
                      |+++.|.|.+.+.  +.+.+.|++++........     ...+..........+.|.|.+++.+|+|.|+|.+.|. +..
T Consensus         1 Ge~~~L~C~~~g~~~~~~~i~W~~~~~~~~~~~~-----~~~~~~~~~~~~~~s~L~I~~v~~~DsG~Y~C~a~n~~~~~   75 (84)
T cd05742           1 GETLVLNCTVLTELNEGVDFQWTYPGKKRGRGKS-----MVTRQSLSEATELSSTLTIPNATLKDSGTYTCAASSGTMDQ   75 (84)
T ss_pred             CCeEEEEEEEEeCCCccEEEEEecCCcccCCceE-----eecccccccceEEEEEEEECCCChhhCEEEEEEEccCCCce
Confidence            7899999999988  7899999885532211000     0001111111112348999999999999999999765 344


Q ss_pred             ceeEEEEE
Q psy15734        113 SQKGYLQV  120 (314)
Q Consensus       113 ~~~~~l~v  120 (314)
                      +....|.|
T Consensus        76 ~~s~~v~v   83 (84)
T cd05742          76 KESTKVNI   83 (84)
T ss_pred             EEEEEEEE
Confidence            55555544

Ig1_VEGFR_like: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R) related proteins. The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF-A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGF

>cd05739 Ig3_RPTP_IIa_LAR_like Third immunoglobulin (Ig)-like domain of the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR

Probab=99.18  E-value=2.2e-10  Score=72.28  Aligned_cols=58  Identities=17%  Similarity=0.324  Sum_probs=42.2

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      |++++|.|.+.|.|.|.+.|++++.. +.        ...++...     ...|.|.++  .|+|.|+|.+.|.
T Consensus         1 G~~v~L~C~a~G~P~P~v~W~k~g~~-l~--------~~~~~~~~-----~~~L~i~~~--~d~G~Y~C~A~N~   58 (69)
T cd05739           1 GGSVNLTCVAVGAPMPYVKWMKGGEE-LT--------KEDEMPVG-----RNVLELTNI--YESANYTCVAISS   58 (69)
T ss_pred             CCeEEEEEEeeecCCCEEEEEECCEE-CC--------CccceecC-----ccEEEEecc--ccCeeEEEEEEeC
Confidence            68899999999999999999995532 21        11122111     126889987  4899999999775

Ig3_RPTP_IIa_LAR_like: domain similar to the third immunoglobulin (Ig)-like domain found in the receptor protein tyrosine phosphatase (RPTP)-F, also known as LAR. LAR belongs to the RPTP type IIa subfamily. Members of this subfamily are cell adhesion molecule-like proteins involved in central nervous system (CNS) development. They have large extracellular portions, comprised of multiple IG-like domains and two to nine fibronectin type III (FNIII) domains, and a cytoplasmic portion having two tandem phosphatase domains. Included in this group is Drosophila LAR (DLAR).

>smart00409 IG Immunoglobulin

Probab=99.18  E-value=7.4e-10  Score=73.33  Aligned_cols=83  Identities=22%  Similarity=0.380  Sum_probs=62.2

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+..|+++.|.|.+.+.+.+.+.|+++++..+....++.......    ...|.|.++..+|+|.|.|.+.+..+...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            45678999999999999998899999997333333233333222111    34899999999999999999999888777


Q ss_pred             eEEEEEE
Q psy15734        264 GFIKVYV  270 (314)
Q Consensus       264 ~~~~l~V  270 (314)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00409       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            7777665

>smart00410 IG_like Immunoglobulin like

Probab=99.18  E-value=7.4e-10  Score=73.33  Aligned_cols=83  Identities=22%  Similarity=0.380  Sum_probs=62.2

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+..|+++.|.|.+.+.+.+.+.|+++++..+....++.......    ...|.|.++..+|+|.|.|.+.+..+...
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~~~~~~~~~~~~~----~~~l~i~~~~~~d~G~Y~C~v~~~~~~~~   78 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLAESGRFSVSRSGS----NSTLTISNVTPEDSGTYTCAATNSSGSAS   78 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcCCCCcEEEEEcCC----eeEEEEEeeccccCeEEEEEEEcCCCeEE
Confidence            45678999999999999998899999997333333233333222111    34899999999999999999999888777


Q ss_pred             eEEEEEE
Q psy15734        264 GFIKVYV  270 (314)
Q Consensus       264 ~~~~l~V  270 (314)
                      ..+.|.|
T Consensus        79 ~~~~l~V   85 (86)
T smart00410       79 STTTLTV   85 (86)
T ss_pred             EEEEEEE
Confidence            7777665

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=99.18  E-value=1.5e-10  Score=71.91  Aligned_cols=63  Identities=29%  Similarity=0.442  Sum_probs=48.3

Q ss_pred             cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +|+++.|.|.+.+.|.+.+.|++++....   .... .....     ..|.|.++..+|+|.|+|.+.|..|
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~---~~~~-~~~~~-----~~L~i~~~~~~d~G~Y~C~~~n~~g   63 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDGKPLP---ESNR-LSASG-----STLTIKSVSLEDSGEYTCVAENSAG   63 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECCEECC---CCCE-EecCC-----cEEEEeeCCcccCEEEEEEEecCCC
Confidence            48899999999999999999999644322   1111 11222     3899999999999999999998765

>cd05760 Ig2_PTK7 Second immunoglobulin (Ig)-like domain of protein tyrosine kinase (PTK) 7, also known as CCK4

Probab=99.17  E-value=1.7e-10  Score=74.76  Aligned_cols=71  Identities=18%  Similarity=0.274  Sum_probs=48.3

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCC-c--cee
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPM-T--SQK  115 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~-~--~~~  115 (314)
                      ++|.|.+.+.|.+.+.|+|++ ..+..       ...++.+...   .+.|.|.+++.+|+|.|.|.+.|..+ .  +..
T Consensus         1 v~L~C~~~g~P~p~v~W~k~g-~~l~~-------~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a~N~~G~~~s~~~   69 (77)
T cd05760           1 VTLRCHIDGHPRPTYQWFRDG-TPLSD-------GQGNYSVSSK---ERTLTLRSAGPDDSGLYYCCAHNAFGSVCSSQN   69 (77)
T ss_pred             CEEEEEeeecCCCcEEEEECC-EECCC-------CCccEEEeCC---CCEEEEeeCCcccCEEEEEEEEeCCCeEeeCce
Confidence            579999999999999999954 33211       1123333221   13799999999999999999987532 2  334


Q ss_pred             EEEEE
Q psy15734        116 GYLQV  120 (314)
Q Consensus       116 ~~l~v  120 (314)
                      +.|.|
T Consensus        70 ~~l~v   74 (77)
T cd05760          70 FTLSI   74 (77)
T ss_pred             EEEEE
Confidence            45554

Ig2_PTK7: domain similar to the second immunoglobulin (Ig)-like domain in protein tyrosine kinase (PTK) 7, also known as CCK4. PTK7 is a subfamily of the receptor protein tyrosine kinase family, and is referred to as an RPTK-like molecule. RPTKs transduce extracellular signals across the cell membrane, and play important roles in regulating cell proliferation, migration, and differentiation. PTK7 is organized as an extracellular portion having seven Ig-like domains, a single transmembrane region, and a cytoplasmic tyrosine kinase-like domain. PTK7 is considered a pseudokinase as it has several unusual residues in some of the highly conserved tyrosine kinase (TK) motifs; it is predicted to lack TK activity. PTK7 may function as a cell-adhesion molecule. PTK7 mRNA is expressed at high levels in placenta, melanocytes, liver, lung, pancreas, and kidney. PTK7 is overexpressed in s

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=99.16  E-value=3.2e-10  Score=73.78  Aligned_cols=70  Identities=10%  Similarity=0.181  Sum_probs=51.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |...|..+.+.+|+++.|.|.+.|.|.+ .+.|++++ ..+..          +.     ....+.|.|.++  .|+|.|
T Consensus         1 f~~~P~~~~v~~G~~v~l~C~a~G~P~P~~I~W~k~g-~~l~~----------~~-----~~~~s~L~i~~~--~d~g~Y   62 (81)
T cd05749           1 FTVEPEDLSVTANTPFNLTCQAVGPPEPVEILWWQGG-SPLGD----------PP-----APSPSVLNVPGL--NETSKF   62 (81)
T ss_pred             CcCCCCceEEcCCCCEEEEEEeeeecCCeEEEEEECC-EECCC----------CC-----CCCCCEEEEccc--cCCeEE
Confidence            3456778999999999999999999998 79999954 33211          00     011126888887  589999


Q ss_pred             EEEEecCCC
Q psy15734        103 MCQINTVPM  111 (314)
Q Consensus       103 ~C~~~~~~~  111 (314)
                      .|.+.|..+
T Consensus        63 ~C~A~N~~G   71 (81)
T cd05749          63 SCEAHNAKG   71 (81)
T ss_pred             EEEEEeccC
Confidence            999988633

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05861 Ig1_PDGFR-alphabeta Frst immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b)

Probab=99.16  E-value=6.6e-10  Score=73.20  Aligned_cols=80  Identities=15%  Similarity=0.206  Sum_probs=51.0

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC---Cc
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP---MT  112 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~---~~  112 (314)
                      |++++|.|.+.+.+.+.+.|++.++.....     .....+..+ ........|.|.+++.+|+|.|.|.+.+..   ..
T Consensus         1 Ge~~~l~C~~~~~~~~~~~W~~~~~~~~~~-----~~~~~~~~~-~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~~~   74 (84)
T cd05861           1 GETITVNCIVQGNEVVDFSWTYPGKDIGKG-----IPEVEEVKV-PATTLRSTLTFPHATVEDSGTYECAAHESTQDQKA   74 (84)
T ss_pred             CCcEEEEEEEECCCccEEEEEECCccCCCC-----ceEEEEEec-CCcEEEEEEEECCCCcCCCEEEEEEEEECccCcce
Confidence            789999999999888999999854321000     000000000 011123489999999999999999997643   34


Q ss_pred             ceeEEEEEE
Q psy15734        113 SQKGYLQVV  121 (314)
Q Consensus       113 ~~~~~l~v~  121 (314)
                      +..+.|.|.
T Consensus        75 ~~sv~i~V~   83 (84)
T cd05861          75 FKKVNITVH   83 (84)
T ss_pred             eEEEEEEEe
Confidence            455555553

Ig1_PDGFR-alphabeta: The first immunoglobulin (Ig)-like domain of platelet-derived growth factor (PDGF) receptors (R), alpha (CD140a), and beta (CD140b). PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFRalpha binds to all three PDGFs, whereas the PDGFRbeta binds only to PDGF-B. PDGFRs alpha and beta have similar organization: an extracellular component with five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFRalpha and PDGFRbeta are essential for normal development.

>cd05855 Ig_TrkB_d5 Fifth domain (immunoglobulin-like) of Trk receptor TrkB

Probab=99.16  E-value=3.1e-10  Score=73.05  Aligned_cols=70  Identities=11%  Similarity=0.110  Sum_probs=47.3

Q ss_pred             EEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEE--E--EeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcce
Q psy15734         40 LMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--I--TFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQ  114 (314)
Q Consensus        40 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~  114 (314)
                      -|+|.+.|.|.|.++|+|++ ..+.        .+.++.  +  .......+.|.|.++..+|+|.|+|.|.|. |....
T Consensus         2 ~i~~~v~G~P~Pti~W~kng-~~l~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   72 (79)
T cd05855           2 CIPFTVKGNPKPTLQWFHEG-AILN--------ESEYICTKIHVINNTEYHGCLQLDNPTHLNNGIYTLVAKNEYGEDEK   72 (79)
T ss_pred             eEEEEEeEeCCCceEEEECC-EECC--------CCcceeeeeEeecccceEEEEEECCCCcccCEEEEEEEEcCCcccce
Confidence            37899999999999999954 4332        122221  1  111123458999999999999999999876 44444


Q ss_pred             eEEE
Q psy15734        115 KGYL  118 (314)
Q Consensus       115 ~~~l  118 (314)
                      .+.+
T Consensus        73 ~~~~   76 (79)
T cd05855          73 NVSA   76 (79)
T ss_pred             EEEe
Confidence            4433

TrkB_d5: the fifth domain of Trk receptor TrkB, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors, which mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. The Trks are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkB shares significant sequence homology and domain organization with TrkA, and TrkC. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. In some cell systems NT-3 can activate TrkA and TrkB receptors. TrKB transcripts are found throughout multiple structures of the central and peripheral nervous systems.

>cd05873 Ig_Sema4D_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4D

Probab=99.15  E-value=4.5e-10  Score=73.72  Aligned_cols=69  Identities=17%  Similarity=0.225  Sum_probs=51.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      .|....+..|+++.|.|.+.+ +.+.+.|+++ +..+..       ...++.+..     +.|.|.+++.+|+|.|+|.+
T Consensus         2 ~P~~~~v~~G~~v~L~C~~~~-~~~~i~W~~n-g~~i~~-------~~~r~~~~~-----~~L~I~nv~~~DsG~Y~C~a   67 (87)
T cd05873           2 DPRQRTFKLGNNAELKCSPKS-NLARVVWKFD-GKVLTP-------ESAKYLLYR-----DGLLIFNASEADAGRYQCLS   67 (87)
T ss_pred             CcceEEEECCCCEEEEEECCC-CCCeEEEEEC-CEECCC-------CCceEEEEC-----CcEEEeCCCHHHCEEEEEEE
Confidence            466788999999999999865 5679999995 443321       113443322     26999999999999999999


Q ss_pred             ecC
Q psy15734        107 NTV  109 (314)
Q Consensus       107 ~~~  109 (314)
                      .+.
T Consensus        68 ~e~   70 (87)
T cd05873          68 VEK   70 (87)
T ss_pred             Eec
Confidence            654

Ig_Sema4D_like; Immunoglobulin (Ig)-like domain of Sema4D. Sema4D is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4D has extracellular Sema and Ig domains, a transmembrane domain, and a short cytoplasmic domain. Sema4D plays a part in the development of GABAergic synapses. Sema4D in addition is an immune semaphorin. It is abundant on resting T cells; its expression is weak on resting B cells and antigen presenting cells (APCs), but is upregulated by various stimuli. The receptor used by Sema4D in the immune system is CD72. Sem4D enhances the activation of B cells and DCs through binding CD72, perhaps by reducing CD72s inhibitory signals. The receptor used by Sema4D in the non-lymphatic tissues is plexin-B1. Sem4D is anchored to the cell surface but its extracellular domain can be released from the cell surface by a metalloproteas

>KOG3515|consensus

Probab=99.15  E-value=2.4e-10  Score=101.52  Aligned_cols=255  Identities=17%  Similarity=0.176  Sum_probs=148.3

Q ss_pred             ceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         30 NVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ...+..|++|.|+|.+.+. |...+.|++.+...-           .+.....+    ..|......+...+.|.|.+.+
T Consensus        16 ~~~~~~g~~v~l~C~v~~~pp~~~~eW~h~~~~~~-----------~~~~~~~~----~~~~~~~~~~~~~~~~~c~a~n   80 (741)
T KOG3515|consen   16 TVGLRLGEDVPLPCRVNSNPPEIDVEWYHSTSGEH-----------GRYATIAD----PTLVTTGDVRDTVAELNCRAFN   80 (741)
T ss_pred             ChhhccCCcceeeeecCCCCCCcceEEEecCcccc-----------cccccccC----Cceeeecchhhhhhhhhhhhcc
Confidence            3489999999999999775 558999999653311           22211111    1577777777777899999966


Q ss_pred             CC--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec--ccCCCceEEEcCCCceeecC------------Ce
Q psy15734        109 VP--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV--GYPEPYVAWRREDGKAINYN------------GE  172 (314)
Q Consensus       109 ~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~--~~p~p~~~W~~~~~~~~~~~------------~~  172 (314)
                      ..  .......+.+..+|.-....  .......+..+.+.|.+.  +.|.+++.|...........            +.
T Consensus        81 s~~~~~~~~~~l~v~~~pa~~~~~--~e~~~~~~~vvqi~c~~~~~~~P~~nlrW~~n~r~e~~~~~~~~~~~~~a~gss  158 (741)
T KOG3515|consen   81 SVGMPSRCPMILDVDYPPACLPEL--GEIFQVDKGVVQIICSAKVAGRPNPNLRWGFNNRAELNAVNQRGRVGAGALGSS  158 (741)
T ss_pred             cccCceecceeeccccCccccccc--cchhhhcCCeEEEEEeecCCCCCCcceeeeeccEEeecccCCcccccccccCce
Confidence            42  22233456666666543322  233455678899999654  45788999997422221111            00


Q ss_pred             -eC--------------------------------------------CCeEEcCCCcceeecCccEEEEEEEe-ecCCce
Q psy15734        173 -LV--------------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE-AFPASL  206 (314)
Q Consensus       173 -~~--------------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~  206 (314)
                       ..                                            ...+..........+|+.+.|.|.+. |.|.+.
T Consensus       159 ~t~~s~l~~~v~Rka~~g~~tC~A~nr~s~~l~~~~~~~i~v~~~~~~~~~~~~~~~qsF~~g~~inlvc~~~gg~P~~~  238 (741)
T KOG3515|consen  159 YTEPSLLKQTVSRKADNGNYTCPANNRNSPGLSFAKQLTIIVEAPCKGIGITGAQEQQSFTEGQTINLVCNAQGGNPSQQ  238 (741)
T ss_pred             eccccceeeEEEEecCCceeEcccccccCccccccceeEeecccccccceecchhhcCcccccceEEEEehhhcCCcchh
Confidence             00                                            11111222335678899999999775 588899


Q ss_pred             eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEE---c
Q psy15734        207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRK---M  283 (314)
Q Consensus       207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~---~  283 (314)
                      +.|+++.......+.   .....++....+.+.+..-...+.-...|.+.|   -..+...+.|..++-.....++   .
T Consensus       239 ~~w~~~s~~~~~~sl---~~~~~sg~~v~~~~~~~~~r~~~~~~~kc~a~n---~~~~~~~tav~~~~~~~~Ist~~~~l  312 (741)
T KOG3515|consen  239 QTWYKDSRPQSESSL---LSQEPSGDTVSSTLVLRVGRQDLQAQLKCKASN---LLAASQITAVQVKPTAVPISTSDSGL  312 (741)
T ss_pred             hhhccccccchhhhc---ccCCCCCCcccccccccccccchhhhhhccccC---ccccceeeecccccccccccCccccc
Confidence            999997544333210   111123333334555544444445578899998   2233444444444332222222   3


Q ss_pred             cccccEeEEEEEee-ccCCCccceE
Q psy15734        284 SRLHMGAYLCIASN-GVVPSVSHRI  307 (314)
Q Consensus       284 ~~~~~g~~~C~a~~-~~~~~~~w~v  307 (314)
                      ..++.+...|...+ .++..+.|..
T Consensus       313 s~g~s~r~~c~~sss~p~~~i~w~~  337 (741)
T KOG3515|consen  313 SSGRSARSSCVSSSSKPPAHIAWYK  337 (741)
T ss_pred             ccccccccceeccCCCCccceeeec
Confidence            34455668888766 5566888865

>cd05734 Ig7_DSCAM Seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM)

Probab=99.14  E-value=3.6e-10  Score=73.70  Aligned_cols=66  Identities=20%  Similarity=0.403  Sum_probs=46.1

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ++|.|.+.|.|.+.+.|++.++..... .......++++.+..+    ++|.|.+++.+|+|.|.|.+.|.
T Consensus         1 v~l~C~~~G~P~P~v~W~~~~~~~~~~-~~~~~~~~~r~~~~~~----~~L~I~~v~~~D~G~Y~C~a~N~   66 (79)
T cd05734           1 VTLNCSAEGYPPPTIVWKHSKGRGHPQ-HTHTCCLAGRIQLLSN----GSLLIKHVLEEDSGYYLCKVSND   66 (79)
T ss_pred             CEeEeeCeEeCCCEEEEEECCCccccc-cccccccCCCEEEecC----CeEEECcCCcccCEEEEEEEEeC
Confidence            579999999999999999964431110 0000113345544332    37999999999999999999876

Ig7_DSCAM: the seventh immunoglobulin (Ig)-like domain of Down Syndrome Cell Adhesion molecule (DSCAM). DSCAM is a cell adhesion molecule expressed largely in the developing nervous system. The gene encoding DSCAM is located at human chromosome 21q22, the locus associated with the mental retardation phenotype of Down Syndrome. DSCAM is predicted to be the largest member of the IG superfamily. It has been demonstrated that DSCAM can mediate cation-independent homophilic intercellular adhesion.

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=99.14  E-value=2.9e-10  Score=75.98  Aligned_cols=79  Identities=20%  Similarity=0.358  Sum_probs=53.4

Q ss_pred             eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeee-----eeecCcCEEEEeC--CceeEEEEEeeecCCCCeEEE
Q psy15734         31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHK-----VVTQNKRVSITFN--DHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-----~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      +.+.+|++|+|+|.+++.+.+.+.|++.+...+......     ......|+.....  +...+.|.|.+++.+|+|.|+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i~W~~~~~k~~~g~~~~l~~~~~~~~~~r~~~~~~~~~~g~~~L~I~~l~~sDsgtY~   81 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRNLWDQGSFPLIIKNLKIEDSDTYI   81 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEEEEEECCcEEccCcCCEEEEecccccCCCCceecccCCCCeEEEEECCCCHHHCEEEE
Confidence            568899999999999888889999997542321111000     0112334444331  223567999999999999999


Q ss_pred             EEEecC
Q psy15734        104 CQINTV  109 (314)
Q Consensus       104 C~~~~~  109 (314)
                      |.+.+.
T Consensus        82 C~v~~~   87 (94)
T cd07690          82 CEVEDK   87 (94)
T ss_pred             EEECCc
Confidence            999653

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd04971 Ig_TrKABC_d5 Fifth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=99.14  E-value=4.4e-10  Score=73.26  Aligned_cols=70  Identities=10%  Similarity=0.106  Sum_probs=46.8

Q ss_pred             EEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEE--EEe----CCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734         40 LMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS--ITF----NDHRSWFLHLRDVQETDRGWYMCQINTV-PMT  112 (314)
Q Consensus        40 ~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~--~~~----~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~  112 (314)
                      -|+|.+.|.|.|.++|+|++ ..+..        +.++.  ...    .....+.|.|.+++.+|+|.|+|.+.|. |..
T Consensus         2 ~i~~~v~G~P~P~v~W~k~g-~~i~~--------~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~YtC~A~N~~G~~   72 (81)
T cd04971           2 CIPFTVRGNPKPTLTWYHNG-AVLNE--------SDYIRTEIHYEVTTPTEYHGCLQFDNPTHVNNGNYTLVASNEYGQD   72 (81)
T ss_pred             eEEEEeEeeCCCcEEEEECC-EECcC--------CCceeEEEEeecccccccEEEEEECCCCcccCeEEEEEEEeCCCCe
Confidence            37899999999999999944 43321        11211  111    1122447999999999999999999876 444


Q ss_pred             ceeEEE
Q psy15734        113 SQKGYL  118 (314)
Q Consensus       113 ~~~~~l  118 (314)
                      +..+.+
T Consensus        73 ~~~~~~   78 (81)
T cd04971          73 SKSISA   78 (81)
T ss_pred             eeEEEe
Confidence            444433

TrkABC_d5: the fifth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrkB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor foun

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=99.13  E-value=7.9e-10  Score=74.23  Aligned_cols=77  Identities=17%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             CCceecCCcceEEEcC---CcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-C
Q psy15734         21 MPRFAEPVANVTATVG---KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-E   96 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~   96 (314)
                      .|.|+.++..+.+.++   +++.|.|.+.+.|.+.+.|++++ ..+..      ....++....     +.|.|.++. .
T Consensus         1 ~P~f~~~p~~~~~~~~~~~~~~~l~C~~~g~p~p~i~W~k~~-~~l~~------~~~~~~~~~~-----~~L~i~~~~~~   68 (91)
T cd04967           1 GPVFEEQPDDTIFPEESDEGKVSLNCRARGSPPPTYRWLMNG-TEIDD------EPDSRYSLVG-----GNLVISNPSKA   68 (91)
T ss_pred             CCeeEeCCCCEEccCCCCCCEEEEEEeeeEcCCCEEEEEECC-EECCC------CCCCCEEEEC-----CEEEEecCCcc
Confidence            3788888887766554   57999999999899999999944 43211      1122333321     279999887 4


Q ss_pred             CCCeEEEEEEecC
Q psy15734         97 TDRGWYMCQINTV  109 (314)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (314)
                      +|+|.|+|.+.|.
T Consensus        69 ~d~G~Y~C~a~N~   81 (91)
T cd04967          69 KDAGRYQCLASNI   81 (91)
T ss_pred             CCCEEEEEEEEcC
Confidence            9999999999875

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=99.13  E-value=1.1e-09  Score=72.63  Aligned_cols=81  Identities=16%  Similarity=0.280  Sum_probs=54.4

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+.+..|+.+.|.|.+.+.+.+.+.|++++ ..+..        +..............|.|.+++.+|+|.|.|.+.+.
T Consensus         3 ~~~~~~G~~~~l~C~~~~~p~~~v~W~k~~-~~~~~--------~~~~~~~~~~~~~~~l~i~~~~~~d~g~Y~C~~~n~   73 (85)
T cd05729           3 LHAVPAGSTVRLKCPASGNPRPTITWLKDG-KPFKK--------EHRIGGYKVRKKKWTLILESVVPSDSGKYTCIVENK   73 (85)
T ss_pred             eeEecCCCcEEEEEEcCCCCCCeEEEEECC-EECcc--------cCceeEEEccCcEEEEEEeECCcccCEEEEEEEEEC
Confidence            356778999999999998888999999954 32211        111111111122347999999999999999999765


Q ss_pred             -CCcceeEEEE
Q psy15734        110 -PMTSQKGYLQ  119 (314)
Q Consensus       110 -~~~~~~~~l~  119 (314)
                       +.....+.|.
T Consensus        74 ~g~~~~~~~l~   84 (85)
T cd05729          74 YGSINHTYKVD   84 (85)
T ss_pred             CceEEEEEEEe
Confidence             3334444443

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05731 Ig3_L1-CAM_like Third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM)

Probab=99.12  E-value=3.2e-10  Score=72.41  Aligned_cols=69  Identities=22%  Similarity=0.396  Sum_probs=47.5

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.+.|.+.+.|++++.. +.         ..+.....   ....|.|.+++.+|+|.|+|.+.|. +..+..+.
T Consensus         1 v~l~C~~~g~P~p~v~W~k~~~~-~~---------~~~~~~~~---~~~~L~i~~v~~~D~G~Y~C~a~N~~G~~~~~~~   67 (71)
T cd05731           1 LLLECIAEGLPTPEISWIKIGGE-LP---------ADRTKFEN---FNKTLKIDNVSEEDDGEYRCTASNSLGSARHTIS   67 (71)
T ss_pred             CEEEEEeeEecCCeEEEEECCeE-CC---------CCceeEec---CCCEEEECCCCHHHCEEEEEEEEeCCceEEEEEE
Confidence            47999999999999999996532 21         11211111   1127999999999999999999775 44444444


Q ss_pred             EEE
Q psy15734        118 LQV  120 (314)
Q Consensus       118 l~v  120 (314)
                      |.|
T Consensus        68 l~V   70 (71)
T cd05731          68 VTV   70 (71)
T ss_pred             EEE
Confidence            444

Ig3_L1-CAM_like: domain similar to the third immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains the chicken neuron-glia cell adhesion molecule, Ng-CAM and human neurofascin.

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.11  E-value=6.6e-10  Score=73.87  Aligned_cols=77  Identities=22%  Similarity=0.413  Sum_probs=58.8

Q ss_pred             CceecC-CcceEEEcCCcEEEEEE-ecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         22 PRFAEP-VANVTATVGKEALMACV-VENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        22 p~~~~~-~~~~~v~~g~~~~l~C~-~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      |.|... .+.+.|.+|+.+.|.|. ..+.|.+.+.|++++...        +..+.|+.+..+    |.|.|.+++.+|+
T Consensus         3 ~~~~~~~~~~v~V~eG~~~~L~C~pP~g~P~P~i~W~~~~~~~--------i~~~~Ri~~~~~----GnL~fs~v~~~D~   70 (95)
T cd05845           3 PKWPKEKIRPVEVEEGDSVVLPCNPPKSAVPLRIYWMNSDLLH--------ITQDERVSMGQN----GNLYFANVEEQDS   70 (95)
T ss_pred             CcCCccccceeEEecCCCEEEEecCCCCCCCCEEEEECCCCcc--------ccccccEEECCC----ceEEEEEEehhhC
Confidence            444444 57899999999999998 588899999999744321        234567666543    4899999999999


Q ss_pred             e-EEEEEEecCC
Q psy15734        100 G-WYMCQINTVP  110 (314)
Q Consensus       100 G-~Y~C~~~~~~  110 (314)
                      | .|.|.+.+..
T Consensus        71 g~~Y~C~a~~~~   82 (95)
T cd05845          71 HPDYICHAHFPG   82 (95)
T ss_pred             CCCeEEEEEccc
Confidence            9 7999997643

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05736 Ig2_Follistatin_like Second immunoglobulin (Ig)-like domain of a follistatin-like molecule encoded by the Mahya gene and similar proteins

Probab=99.11  E-value=8.1e-10  Score=71.49  Aligned_cols=73  Identities=23%  Similarity=0.348  Sum_probs=50.6

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEE
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGY  117 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~  117 (314)
                      +.|.|.+.+.|.+.+.|++++ ..+..      ....++....++   ..|.|.+++.+|.|.|+|.+.|. +.....+.
T Consensus         1 ~~L~C~v~g~P~p~v~W~k~~-~~l~~------~~~~~~~~~~~~---~~l~I~~~~~~D~G~Y~C~a~N~~G~~~~~~~   70 (76)
T cd05736           1 ASLRCHAEGIPLPRLTWLKNG-MDITP------KLSKQLTLIANG---SELHISNVRYEDTGAYTCIAKNEAGVDEDISS   70 (76)
T ss_pred             CEeEeEeeecCCCEEEEEECC-EECCC------CCCccEEEeCCC---CEEEECcCCcccCEEEEEEEEcCCCCcceEEE
Confidence            468999999999999999954 33211      112233332221   26999999999999999999775 55566666


Q ss_pred             EEEE
Q psy15734        118 LQVV  121 (314)
Q Consensus       118 l~v~  121 (314)
                      |.|.
T Consensus        71 l~V~   74 (76)
T cd05736          71 LFVE   74 (76)
T ss_pred             EEEE
Confidence            6654

Ig2_Follistatin_like: domain similar to the second immunoglobulin (Ig)-like domain found in a follistatin-like molecule encoded by the CNS-related Mahya gene. Mahya genes have been retained in certain Bilaterian branches during evolution. They are conserved in Hymenoptera and Deuterostomes, but are absent from other metazoan species such as fruit fly and nematode. Mahya proteins are secretory, with a follistatin-like domain (Kazal-type serine/threonine protease inhibitor domain and EF-hand calcium-binding domain), two Ig-like domains, and a novel C-terminal domain. Mahya may be involved in learning and memory and in processing of sensory information in Hymenoptera and vertebrates. Follistatin is a secreted, multidomain protein that binds activins with high affinity and antagonizes their signaling.

>cd07702 Ig2_VEGFR-1 Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1)

Probab=99.09  E-value=5e-10  Score=70.82  Aligned_cols=58  Identities=21%  Similarity=0.300  Sum_probs=42.4

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.|.|.|.+.|+|++ ..+..       ...++..  ++   ++|.|.+++.+|+|.|+|.+.+.
T Consensus         1 ~~l~c~v~g~P~P~v~W~kdg-~~l~~-------~~~~~~~--~~---~~L~I~~v~~~D~G~YtC~a~~~   58 (72)
T cd07702           1 YRLTPKVKAFPAPEVIWLKDG-LPAAE-------KCSRYHV--DG---YSLVIKDVTEEDAGIYTILLGIK   58 (72)
T ss_pred             CeEEeeEEEcCCCeEEEEECC-EECCC-------CCcEEEe--CC---CEEEECcCCHHHCEEEEEEEEcc
Confidence            478999999999999999954 33211       1122221  11   27999999999999999999764

Ig2_VEGFR-1: Second immunoglobulin (Ig)-like domain of vascular endothelial growth factor receptor 1 (VEGFR-1). VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. VEGFRs bind VEGFs with high affinity at the Ig-like domains. VEGFR-1 binds VEGF-A strongly; VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-1 may play an inhibitory rolet in the function of VEGFR-2 by binding VEGF-A and interfering with its interaction with VEGFR-2. VEGFR-1 has a signaling role in mediating monocyte chemotaxis and may mediate a chemotactic and a survival signal in hematopoietic stem cells or leukemia cells.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=99.07  E-value=3.5e-09  Score=70.71  Aligned_cols=74  Identities=9%  Similarity=0.169  Sum_probs=54.3

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeee-------ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-------ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .+++.+.+|+++.|+|.+++.....+.|++.+...+       ....++......+   ...+|+|.+++.+|+|.|.|.
T Consensus         4 ~~nvtv~~G~ta~L~C~v~~~~~~~v~w~~~~~~~i~~~~~~~~~d~Rf~~~~~~~---~~~tL~I~~vq~~D~G~Y~Cq   80 (95)
T cd05881           4 TEDVTVVEGEVAIISCRVKNNDDSVIQLLNPNRQTIYFRDVRPLKDSRFQLVNFSS---NELRVSLSNVSLSDEGRYFCQ   80 (95)
T ss_pred             cCceEEcCCCcEEEEEEEccCCccEEEEEecCCcEEEecCccccCCcCEEEEeCCC---CEEEEEECcCCcccCEEEEEE
Confidence            355778999999999999998777788887653332       2344554442222   234799999999999999999


Q ss_pred             EeeC
Q psy15734        255 AVNA  258 (314)
Q Consensus       255 a~n~  258 (314)
                      +...
T Consensus        81 v~t~   84 (95)
T cd05881          81 LYTD   84 (95)
T ss_pred             EEcc
Confidence            9763

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd05727 Ig2_Contactin-2-like Second Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=99.07  E-value=8.4e-10  Score=73.51  Aligned_cols=72  Identities=17%  Similarity=0.302  Sum_probs=53.1

Q ss_pred             CcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         28 VANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ...+.+.+|+.+.|.|.. .+.|.+.+.|++++....       ...+.|..+..   ..|.|.|.+++++|+|.|+|.+
T Consensus        10 ~~~~~v~eG~~~~L~C~pP~g~P~p~~~W~k~~~~~~-------~~~d~r~~~~~---~~G~L~fs~v~~~D~g~Y~C~A   79 (96)
T cd05727          10 RDEVKVKEGWGVVLFCDPPPHYPDLSYRWLLNEFPNF-------IPEDGRRFVSQ---TNGNLYIAKVEASDRGNYSCFV   79 (96)
T ss_pred             cCceeeeeCCcEEEeeCCCCCCCCCEEEEEECCcccc-------cccCCCeEEeC---CCCcEEEeecCHhhCceeEEEE
Confidence            456789999999999987 567889999999643211       11233433332   2348999999999999999999


Q ss_pred             ecC
Q psy15734        107 NTV  109 (314)
Q Consensus       107 ~~~  109 (314)
                      .+.
T Consensus        80 ~n~   82 (96)
T cd05727          80 SSP   82 (96)
T ss_pred             Eec
Confidence            764

Ig2_Contactin-2-like: second Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=99.07  E-value=3e-09  Score=71.01  Aligned_cols=84  Identities=23%  Similarity=0.278  Sum_probs=54.1

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..+.+.+|+++.|.|... .|.+.+.||+.+......   .....+.++....     +.|.|.+++++|+|.|+|.+.+
T Consensus         4 ~~~~~~eG~~v~L~C~~~-~p~p~v~Wykq~~g~~~~---~~~~~~~r~~~~~-----~~L~I~~~~~~DsG~Y~C~a~~   74 (91)
T cd05871           4 KVVYGVENNSTFLECLPK-SPQASVKWLFQRGGDQRK---EEVKTEERLIHTE-----RGLLLRSLQRSDAGVYTCTAVE   74 (91)
T ss_pred             eEEEEecCCcEEEEEECC-CCCceEEEEEECCCCCcc---ccccccccEEEec-----CeEEEeeCChhHCEEEEEEEEc
Confidence            356788999999999974 688899999854211100   0011233444322     2699999999999999999964


Q ss_pred             CCC--cceeEEEEEE
Q psy15734        109 VPM--TSQKGYLQVV  121 (314)
Q Consensus       109 ~~~--~~~~~~l~v~  121 (314)
                      .+.  ....+.|.|.
T Consensus        75 ~~~~~~~~~~~l~v~   89 (91)
T cd05871          75 HSFSQTLAKYTLHVI   89 (91)
T ss_pred             cCCeEEEEEEEEEEe
Confidence            332  2234445543

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=99.06  E-value=1.1e-09  Score=70.35  Aligned_cols=67  Identities=16%  Similarity=0.146  Sum_probs=49.0

Q ss_pred             EEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        193 VELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       193 ~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +.|+|.+. |.|++.+.||+++..+. ... . .......+...++|.+.....+|.+.|+|+|.|+.+..
T Consensus         2 ~~L~C~s~~skP~a~i~W~k~~~~l~-~~~-~-~~~~~~~~t~~s~L~~~~~~~Ddg~~~~C~A~n~a~~~   69 (80)
T cd05885           2 VELTCLSPRSKPAATLRWYRDRKELK-GVI-S-QQENGKTVSVSNTIRFPVDRKDDGAILSCEASHPALVS   69 (80)
T ss_pred             EEEEEeCCCccCCCeEEEEECCEECC-CCc-c-cccCCceEEEEEEEEEEeeeccCCcEEEEEEEChhhCC
Confidence            68999885 68999999999754432 211 1 11112225667799999999999999999999988754

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=99.06  E-value=1.3e-09  Score=72.18  Aligned_cols=69  Identities=20%  Similarity=0.369  Sum_probs=52.3

Q ss_pred             ecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      +.+|+.+.+.+|++++|.|.+.+ .+.+.+.|++.+.. +.        .  +.  ..   ..+.|.|.+++.+|+|.|+
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~--------~--~~--~~---~~~~L~I~~v~~~DsG~Y~   68 (85)
T cd05754           5 VEEPRSQEVRPGADVSFICRAKSKSPAYTLVWTRVGGG-LP--------S--RA--MD---FNGILTIRNVQLSDAGTYV   68 (85)
T ss_pred             ecCCCceEEcCCCCEEEEEEcCCCCCCcEEEEEECCCc-CC--------C--cc--cc---cCCEEEECCCCHHHCEEEE
Confidence            45677889999999999999964 67789999996532 11        0  10  00   1237999999999999999


Q ss_pred             EEEecC
Q psy15734        104 CQINTV  109 (314)
Q Consensus       104 C~~~~~  109 (314)
                      |.+.|.
T Consensus        69 C~a~n~   74 (85)
T cd05754          69 CTGSNM   74 (85)
T ss_pred             EEEecc
Confidence            999764

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=99.06  E-value=1.6e-09  Score=71.14  Aligned_cols=75  Identities=21%  Similarity=0.313  Sum_probs=51.8

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeC-C-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCc--eeEEE
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLIN-G-YSCHMTLKIRSILSHQFGSYRCVAVNALGET--DGFIK  267 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~  267 (314)
                      +.|.|.+.| .|.+.+.|+++ +..+. ..........+ + +...+.|.|.....+|.|.|+|.|.|.....  ..++.
T Consensus         2 ~~L~C~v~g~~P~~~v~W~~~-g~~l~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~~~~~y~C~a~n~~l~~~~~~s~~   79 (82)
T cd05759           2 YNLTCRARGAKPAAEIIWFRD-GEVLD-GATYSKELLKDGKRETTVSTLPITPSDHDTGRTFTCRARNEALPTGKETSVT   79 (82)
T ss_pred             EEEEEEEeCccCCCEEEEEEC-CEEcc-CceeeeeEecCCCeEEEEEEEEEeCceecCCCEEEEEEcCccCCCCcEEEEE
Confidence            689999987 68899999996 44333 22222222222 2 5566789999888889999999999977544  44544


Q ss_pred             EE
Q psy15734        268 VY  269 (314)
Q Consensus       268 l~  269 (314)
                      |.
T Consensus        80 l~   81 (82)
T cd05759          80 LD   81 (82)
T ss_pred             Ec
Confidence            43

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=99.05  E-value=8e-10  Score=71.30  Aligned_cols=74  Identities=24%  Similarity=0.375  Sum_probs=50.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.|...+.......+. +.|.|.+.+.| .+.+.|+.. .....       ..........+.|.|.++..+|.|.|+|
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~~-~~~~~-------~~~~~~~~~~~~L~i~~v~~~~~g~y~C   71 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYDS-NPSFN-------SNSRGSSSSNSTLTISNVTRSDNGTYTC   71 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEETE-EEEEE-------EEEEEEEEEEEEEEESSCCGGGTEEEEE
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEec-CCcee-------eeeeeccceeeEEEEccCCHHhCcEEEE
Confidence            36666666555454455 99999999988 889999911 11111       1111122345699999999999999999


Q ss_pred             EEee
Q psy15734        254 VAVN  257 (314)
Q Consensus       254 ~a~n  257 (314)
                      .|.|
T Consensus        72 ~a~N   75 (75)
T PF13927_consen   72 IASN   75 (75)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9987

...

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=99.05  E-value=3.5e-09  Score=73.84  Aligned_cols=84  Identities=18%  Similarity=0.361  Sum_probs=59.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCce-e---EEEeeee-eeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQ-T---ILSIHHK-VVTQNKRVSITFN-DHRSWFLHLRDVQETDR   99 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~-~---~~~~~~~-~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   99 (314)
                      .++..+.+.+|++++|.|.+.+.+...+.||+.... .   +...... .....+|+.+... ....+.|.|.+++.+|+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Ds   82 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKSRKSSSLHISAAQLSDS   82 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEcccCCEEEEEECCCCHHHC
Confidence            457788999999999999998767789999986421 1   1111000 0123457766543 23567899999999999


Q ss_pred             eEEEEEEecC
Q psy15734        100 GWYMCQINTV  109 (314)
Q Consensus       100 G~Y~C~~~~~  109 (314)
                      |.|.|.+.+.
T Consensus        83 G~Y~C~~~~~   92 (109)
T cd04983          83 AVYFCALSES   92 (109)
T ss_pred             EEEEEEEecC
Confidence            9999998653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05750 Ig_Pro_neuregulin Immunoglobulin (Ig)-like domain in neuregulins (NRGs)

Probab=99.04  E-value=1.6e-09  Score=69.94  Aligned_cols=63  Identities=16%  Similarity=0.376  Sum_probs=43.6

Q ss_pred             EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcC-EEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKR-VSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.+ .|.+.+.|++++ ..+...      .... +.+.. ......|.|.+++.+|+|.|+|.+.|.
T Consensus         1 ~~l~C~~~g~~P~p~~~W~k~g-~~l~~~------~~~~~~~~~~-~~~~~~L~I~~~~~~D~G~Y~C~a~N~   65 (75)
T cd05750           1 LVLKCEATSEYPSLRFKWFKDG-KELNRK------NKPRNIKIRN-KKKNSELQINKAKLADSGEYTCVVENI   65 (75)
T ss_pred             CEEEEEccCCCCCceEEEEcCC-eecccc------CCcceEEEEe-cCceEEEEEccCCcccCeEEEEEEEEc
Confidence            479999999 899999999954 433211      0111 11221 122347999999999999999999875

Ig_Pro_neuregulin: immunoglobulin (Ig)-like domain in neuregulins (NRGs). NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. There are four members of the neuregulin gene family (NRG1, -2, -3, and -4). The NRG-1 protein, binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. The other NRGs proteins bind one or the other or both of these ErbBs. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates processes such as target cell differentiation, and Schwann cell surv

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=99.02  E-value=7.8e-10  Score=68.98  Aligned_cols=63  Identities=22%  Similarity=0.427  Sum_probs=44.0

Q ss_pred             CccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        190 SQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       190 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |+++.|.|.+ .+.+.+.+.|++++.........   .....+......|.|.++..+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~---~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTT---NRSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEE---EEEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCccee---EeecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 77888899999986543322111   111121111224999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05753 Ig2_FcgammaR_like Second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=99.02  E-value=1.4e-09  Score=71.45  Aligned_cols=62  Identities=18%  Similarity=0.174  Sum_probs=46.4

Q ss_pred             ceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         30 NVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ...+.+|++++|.|.+.. .+...+.|++++. .+..        .         .....|.|.+++.+|+|.|+|.+.+
T Consensus         8 ~~~V~~G~~vtL~C~~~~~~~~~~~~w~k~g~-~~~~--------~---------~~~~~l~I~~~~~~dsG~Y~C~~~~   69 (83)
T cd05753           8 SRVVFEGEPLVLRCHGWKNKPVYKVTYYRDGK-AKKY--------S---------HSNSNLSIPQATLSDSGSYHCSGII   69 (83)
T ss_pred             cceecCCCCEEEEeeCCCCCcceEEEEEECCe-Eccc--------c---------CCCceEEECccCHHHCEEEEEEEEe
Confidence            446999999999999854 4567899999553 2210        0         0112799999999999999999976


Q ss_pred             C
Q psy15734        109 V  109 (314)
Q Consensus       109 ~  109 (314)
                      .
T Consensus        70 ~   70 (83)
T cd05753          70 G   70 (83)
T ss_pred             C
Confidence            4

Ig2_FcgammaR_like: domain similar to the second immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=99.02  E-value=3.4e-09  Score=73.89  Aligned_cols=82  Identities=11%  Similarity=0.200  Sum_probs=57.7

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeeeee-----eecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHHKV-----VTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ..|..+.+.+|++++|.|.+.+ +...+.|||... ..   +.......     .....|+.........+.|.|.+++.
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~~~~   81 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPSLTRSSLTIKSAEP   81 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcCCCccEEEECCCCh
Confidence            4577889999999999999987 667899999642 11   11111000     11235666554433556899999999


Q ss_pred             CCCeEEEEEEec
Q psy15734         97 TDRGWYMCQINT  108 (314)
Q Consensus        97 ~d~G~Y~C~~~~  108 (314)
                      +|+|.|.|.+..
T Consensus        82 ~Dsg~Y~Ca~~~   93 (110)
T cd05899          82 EDSAVYLCASSL   93 (110)
T ss_pred             hhCEEEEEEeeC
Confidence            999999999854

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05875 Ig6_hNeurofascin_like Sixth immunoglobulin (Ig)-like domain of human neurofascin (NF)

Probab=99.02  E-value=4.5e-09  Score=67.91  Aligned_cols=64  Identities=19%  Similarity=0.182  Sum_probs=43.9

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCCc
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPMT  112 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~  112 (314)
                      +.|.|.+.|.|.+.+.|+|++ ..+.      ...+.++.+...   .++|.|.++..    .|+|.|+|.+.|..+.
T Consensus         1 ~~l~C~~~G~P~P~v~W~k~g-~~~~------~~~~~~~~~~~~---~~~L~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05875           1 IIIECEAKGNPVPTFQWTRNG-KFFN------VAKDPRVSMRRR---SGTLVIDFSGGGRPEDYEGEYQCFARNNLGT   68 (77)
T ss_pred             CEEEEeccccCCCEEEEEECC-EEcc------CcCCCcEEEeCC---CceEEEeccCCCCCCCCCEEEEEEEEeccce
Confidence            479999999999999999954 3221      122444444322   23799987642    4699999999886443

Ig6_hNeurofascin_like: the sixth immunoglobulin (Ig)-like domain of human neurofascin (NF). NF belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and a cytoplasmic domain. NF has many alternatively spliced isoforms having different temporal expression patterns during development. NF participates in axon subcellular targeting and synapse formation, however little is known of the functions of the different isoforms.

>cd05733 Ig6_L1-CAM_like Sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=99.01  E-value=3.1e-09  Score=68.83  Aligned_cols=63  Identities=14%  Similarity=0.228  Sum_probs=43.5

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCC
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPM  111 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~  111 (314)
                      +.|.|.+.|.|.+.+.|+|++ ..+..      ..+.++.+...   .+.|.|.+++.    +|+|.|.|.+.|..+
T Consensus         1 i~l~C~~~G~P~P~v~W~k~g-~~l~~------~~~~~~~~~~~---~g~L~i~~~~~~~~~~d~G~Y~C~A~N~~G   67 (77)
T cd05733           1 IVIKCEAKGNPPPTFSWTRNG-THFDP------EKDPRVTMKPD---SGTLVIDNMNGGRAEDYEGEYQCYASNELG   67 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECC-eECCC------CCCCCEEEeCC---CCEEEEeccCCCCCcCCCEEEEEEEEcCCC
Confidence            479999999999999999954 33211      11234433221   23788988754    789999999988643

Ig6_L1-CAM_like: domain similar to the sixth immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth. This group also contains NrCAM [Ng(neuronglia)CAM-related cell adhesion molecule], which is primarily expressed in the nervous system, and human neurofascin.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.99  E-value=2e-09  Score=71.84  Aligned_cols=72  Identities=15%  Similarity=0.116  Sum_probs=50.5

Q ss_pred             eeecCccEEEEEEE-ee----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        186 GAFVSQTVELHCHT-EA----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       186 ~v~~g~~~~l~C~~-~g----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .+..|.+..|.|.- .+    .+.|.+.|+|++ ..+............+.     .|.|.++..+|+|.|+|+|.+..|
T Consensus         6 ~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~YtC~~~~~~~   79 (95)
T cd05897           6 ILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDKDNEKFYSLKGST-----YLHIIDVSLNDSGYYTCKLQFTHE   79 (95)
T ss_pred             EeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcCCCcceEecCCCC-----EEEEEEcChhhCEEEEEEEEEeeC
Confidence            46788999999973 33    467899999974 43332221111111222     799999999999999999999876


Q ss_pred             Cce
Q psy15734        261 ETD  263 (314)
Q Consensus       261 ~~~  263 (314)
                      ...
T Consensus        80 g~~   82 (95)
T cd05897          80 GKK   82 (95)
T ss_pred             CEE
Confidence            553

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=98.99  E-value=1.5e-08  Score=68.04  Aligned_cols=90  Identities=14%  Similarity=0.196  Sum_probs=60.9

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC---ceeEEEEEeeecCC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFND---HRSWFLHLRDVQET   97 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~i~~~~~~   97 (314)
                      |.++.......+.+|+++.|.|.+.+.|. ..+.|...+. .+.      ...+.++.+....   .....|.|.++..+
T Consensus         2 pP~i~~~~s~~~~~G~~~~L~C~~~s~P~P~~i~W~w~~~-~i~------~~~~~r~~I~~~~~~~g~~S~L~I~~~~~~   74 (98)
T cd05898           2 PPIISSEQVQYAVRGERGKVKCFIGSTPPPDRIAWAWKEN-VLE------SGTSERYTVERTSTGSGVLSTLTINNIMEA   74 (98)
T ss_pred             CCEEecCceEEEeCCCcEEEEEEEccCCCCcEEEEEEccc-ccc------CCCCCCEEEEEEccCCCcEEEEEECCCccc
Confidence            44457777888999999999999966555 5778887432 221      1123466665432   22348999999887


Q ss_pred             C-CeEEEEEEecC-CCcceeEEE
Q psy15734         98 D-RGWYMCQINTV-PMTSQKGYL  118 (314)
Q Consensus        98 d-~G~Y~C~~~~~-~~~~~~~~l  118 (314)
                      | .|.|.|.+.|. |.....+.|
T Consensus        75 d~~g~Y~C~a~N~~G~d~~~i~L   97 (98)
T cd05898          75 DFQTHYNCTAWNSFGSGTAIIQL   97 (98)
T ss_pred             cCCcEEEEEEEeCCccceEEEEe
Confidence            7 89999999775 444444443

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>PF00047 ig: Immunoglobulin domain The Prosite family only concerns antibodies and MHCs

Probab=98.98  E-value=3.7e-09  Score=65.86  Aligned_cols=62  Identities=23%  Similarity=0.312  Sum_probs=42.9

Q ss_pred             CCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeE-EEEEeeecCCCCeEEEEEE
Q psy15734         36 GKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW-FLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        36 g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~~  106 (314)
                      |++++|.|.+ .+.+...+.|++++..........         ......... .|.|.+++.+|+|.|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~W~~~~~~~~~~~~~~---------~~~~~~~~~~~L~i~~v~~~d~G~Y~C~v   64 (64)
T PF00047_consen    1 GSSVTLTCSVSSGPPPTTVTWSKNGQSLPEGSTTN---------RSTNSVSSTSRLTISNVTPEDSGTYTCVV   64 (64)
T ss_dssp             TSEEEEEEEEEESSSTSEEEEEETTTTTSEEEEEE---------EEETTTEEEEEEEESSCTGGGTEEEEEEE
T ss_pred             CCeEEEEeecCCCCCCcEEEEEECCccccCcceeE---------eecccceeeeEEEEccCCHHHCEEEEEEC
Confidence            7899999999 667888999999765432221111         111111111 3999999999999999986

; InterPro: IPR013151 Members of the immunoglobulin superfamily are found in hundreds of proteins of different functions. Examples include antibodies, the giant muscle kinase titin and receptor tyrosine kinases. Immunoglobulin-like domains may be involved in protein-protein and protein-ligand interactions. The Pfam alignments do not include the first and last strand of the immunoglobulin-like domain.; PDB: 1B6U_A 3O4O_C 3VH8_H 1BIH_A 2C9A_A 2V5Y_A 1BQH_K 2ATP_A 3B9K_A 1NEZ_H ....

>cd05874 Ig6_NrCAM Sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule)

Probab=98.97  E-value=7.8e-09  Score=66.80  Aligned_cols=64  Identities=13%  Similarity=0.239  Sum_probs=42.7

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC----CCCeEEEEEEecCCCc
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE----TDRGWYMCQINTVPMT  112 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~----~d~G~Y~C~~~~~~~~  112 (314)
                      +.|.|.+.|.|.+.+.|++++ ..+.      ...+.++.+...   .++|.|..+..    .|.|.|+|.+.|..+.
T Consensus         1 ~~l~C~a~G~P~P~i~W~k~g-~~l~------~~~~~~~~~~~~---~g~l~i~~~~~~~~~~d~G~Y~C~A~N~~G~   68 (77)
T cd05874           1 IVIQCEAKGKPPPSFSWTRNG-THFD------IDKDPKVTMKPN---TGTLVINIMNGEKAEAYEGVYQCTARNERGA   68 (77)
T ss_pred             CEEEeeCcccCCCeEEEEECC-eECC------CcCCCCEEEeCC---CceEEEeccccCCCCCCCEEEEEEEEcCCCe
Confidence            479999999999999999954 3321      112233333221   23688877764    3789999999886443

Ig6_NrCAM: sixth immunoglobulin (Ig)-like domain of NrCAM (Ng (neuronglia) CAM-related cell adhesion molecule). NrCAM belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains and five fibronectin type III domains, a transmembrane region, and an intracellular domain. NrCAM is primarily expressed in the nervous system.

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.97  E-value=1.1e-08  Score=70.03  Aligned_cols=85  Identities=18%  Similarity=0.320  Sum_probs=51.7

Q ss_pred             CCcEEEEEEecC---CCceEEEEEEcCceeEEEeeee--ee------ecCcCEEEEeC--CceeEEEEEeeecCCCCeEE
Q psy15734         36 GKEALMACVVEN---LREYKVAWVKMITQTILSIHHK--VV------TQNKRVSITFN--DHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        36 g~~~~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~~--~~------~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |++++|+|....   .....+.|++.....+......  ..      .-.+|+.+..+  .....+|+|.+++.+|+|.|
T Consensus         1 G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~v~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~sL~I~~v~~~D~G~Y   80 (100)
T cd05713           1 GEDAELPCHLSPKMSAEHMEVRWFRSQFSPAVHLYRDGQDQYGEQMPEYRGRTELLKDAIAEGSVALRIHNVRASDEGLY   80 (100)
T ss_pred             CCcEEEEeEEcCCCCCCeeEEEEEECCCceeEEEEcCCcccccccCccccceEEeecccccCCcEEEEEEcCChhhCEEE
Confidence            789999999853   2336899999654332221111  00      01235555432  12346899999999999999


Q ss_pred             EEEEecCC-CcceeEEEEE
Q psy15734        103 MCQINTVP-MTSQKGYLQV  120 (314)
Q Consensus       103 ~C~~~~~~-~~~~~~~l~v  120 (314)
                      +|.+.+.+ ..+..+.|.|
T Consensus        81 ~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          81 TCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             EEEEecCCcEEEEEEEEEE
Confidence            99997543 3333334443

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05895 Ig_Pro_neuregulin-1 Immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1

Probab=98.97  E-value=4.1e-09  Score=68.12  Aligned_cols=65  Identities=17%  Similarity=0.350  Sum_probs=43.2

Q ss_pred             EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.+ .|.+.+.|++++ ..+....    ....++.+... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus         1 ~~L~C~a~~~~p~~~~~W~~~g-~~i~~~~----~~~~~~~~~~~-~~~~~L~I~~~~~~DsG~Y~C~a~N~   66 (76)
T cd05895           1 LVLRCETVSEYPSLRFKWFKNG-KEIGAKN----KPDNKIKIRKK-KKSSELQISKASLADNGEYKCMVSSK   66 (76)
T ss_pred             CEEEEecccCCCCCceEEEECC-cccccCC----CCCceEEEEeC-CcEEEEEECcCCcccCEEEEEEEEeC
Confidence            479999864 577899999954 4332100    11222333222 22347999999999999999999775

Ig_Pro_neuregulin-1: immunoglobulin (Ig)-like domain found in neuregulin (NRG)-1. There are many NRG-1 isoforms which arise from the alternative splicing of mRNA. NRG-1 belongs to the neuregulin gene family, which is comprised of four genes. This group represents NRG-1. NRGs are signaling molecules, which participate in cell-cell interactions in the nervous system, breast, and heart, and other organ systems, and are implicated in the pathology of diseases including schizophrenia, multiple sclerosis, and breast cancer. The NRG-1 protein binds to and activates the tyrosine kinases receptors ErbB3 and ErbB4, initiating signaling cascades. NRG-1 has multiple functions; for example, in the brain it regulates various processes such as radial glia formation and neuronal migration, dendritic development, and expression of neurotransmitters receptors; in the peripheral nervous system NRG-1 regulates process

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.95  E-value=6e-09  Score=69.71  Aligned_cols=80  Identities=16%  Similarity=0.130  Sum_probs=56.9

Q ss_pred             ceeecCccEEEEEEEe-----------ecCCceeEEecCCCeeeecCC----ceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        185 EGAFVSQTVELHCHTE-----------AFPASLNYWTNEKGDMIITGD----DYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~-----------g~p~p~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      ..+.+|+.+.|.|...           ..+...+.|+|++.......+    ..++. ..+.     .|.|.++..+|+|
T Consensus        10 ~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~~~~~~~~~Ri~-~~~~-----~Lwf~Pa~~eDSG   83 (104)
T cd05896          10 YMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEPIEIIFDGVRMS-KEED-----SIWFRPAELQDSG   83 (104)
T ss_pred             EEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCCCcccccceeEE-EeCC-----EEEEEeCChhhCe
Confidence            4678999999999862           122347899998533222221    11222 2333     9999999999999


Q ss_pred             EEEEEEeeCCCCceeEEEEEE
Q psy15734        250 SYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      .|+|.+.|........+.|+|
T Consensus        84 ~Y~C~~rN~t~C~~~~i~l~V  104 (104)
T cd05896          84 LYTCVLRNSTYCMKVSMSLTV  104 (104)
T ss_pred             EEEEEECCCCcceEEEEEEEC
Confidence            999999999888787777764

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.94  E-value=1.1e-08  Score=70.90  Aligned_cols=84  Identities=18%  Similarity=0.326  Sum_probs=57.3

Q ss_pred             cCccEEEEEEEeecC------CceeEEecCC--C--e--eee-cCCc------eeeeEe-eCCeeeEEEEEEeecCCCCC
Q psy15734        189 VSQTVELHCHTEAFP------ASLNYWTNEK--G--D--MII-TGDD------YEDSRL-INGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p------~p~~~W~~~~--~--~--~~~-~~~~------~~~~~~-~~~~~~~s~L~i~~~~~~d~  248 (314)
                      .|++++|.|.....+      .+.+.|++..  .  .  .+. ....      +..... ........+|+|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            489999999998764      4688999862  1  1  111 1111      111111 01112356999999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|.|.+.+..+.....+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            999999999888888888888864

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>smart00410 IG_like Immunoglobulin like

Probab=98.94  E-value=4e-08  Score=64.83  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=53.6

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..+.+..|+++.|.|.+.+.+...+.|+++++..+.        ...++....... ...|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00410        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEc
Confidence            456788999999999998877889999996233221        233444443322 34799999999999999999975


Q ss_pred             C
Q psy15734        109 V  109 (314)
Q Consensus       109 ~  109 (314)
                      .
T Consensus        73 ~   73 (86)
T smart00410       73 S   73 (86)
T ss_pred             C
Confidence            4

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=98.94  E-value=4e-08  Score=64.83  Aligned_cols=72  Identities=22%  Similarity=0.383  Sum_probs=53.6

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..+.+..|+++.|.|.+.+.+...+.|+++++..+.        ...++....... ...|.|.+++.+|+|.|.|.+.+
T Consensus         2 ~~~~~~~g~~~~l~C~~~~~~~~~~~W~~~~~~~v~--------~~~~~~~~~~~~-~~~l~i~~~~~~d~G~Y~C~v~~   72 (86)
T smart00409        2 PSVTVKEGESVTLSCEVSGSPPPEVTWYKQGGKLLA--------ESGRFSVSRSGS-NSTLTISNVTPEDSGTYTCAATN   72 (86)
T ss_pred             CcEEEeCCCeEEEEEEEccCCCCeEEEEECCCEEcC--------CCCcEEEEEcCC-eeEEEEEeeccccCeEEEEEEEc
Confidence            456788999999999998877889999996233221        233444443322 34799999999999999999975


Q ss_pred             C
Q psy15734        109 V  109 (314)
Q Consensus       109 ~  109 (314)
                      .
T Consensus        73 ~   73 (86)
T smart00409       73 S   73 (86)
T ss_pred             C
Confidence            4

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=98.93  E-value=8.3e-09  Score=71.92  Aligned_cols=79  Identities=14%  Similarity=0.169  Sum_probs=55.8

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe--e--ee---------cCCceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD--M--II---------TGDDYEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~--~--~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      .++....+.+|++++|.|.+.+.+...+.|++....  .  +.         ...++.+.....  .....|.|.+++.+
T Consensus         3 q~~~~v~~~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~~~~~   80 (109)
T cd04983           3 QSPQSLSVQEGENVTLNCNYSTSTFYYLFWYRQYPGQGPQFLIYISSNGEEKEKGRFSATLDKS--RKSSSLHISAAQLS   80 (109)
T ss_pred             ecCCceEEcCCCCEEEEEEECCCCccEEEEEEECCCCCeEEEEEEecCCCcccCCcEEEEEccc--CCEEEEEECCCCHH
Confidence            456677899999999999999888889999985321  0  00         112222221111  13458999999999


Q ss_pred             CCeEEEEEEeeCCC
Q psy15734        247 QFGSYRCVAVNALG  260 (314)
Q Consensus       247 d~G~Y~C~a~n~~g  260 (314)
                      |+|.|.|.+.+..+
T Consensus        81 DsG~Y~C~~~~~~~   94 (109)
T cd04983          81 DSAVYFCALSESGG   94 (109)
T ss_pred             HCEEEEEEEecCCC
Confidence            99999999987653

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05757 Ig2_IL1R_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R) and similar proteins

Probab=98.93  E-value=9.8e-09  Score=68.57  Aligned_cols=66  Identities=18%  Similarity=0.287  Sum_probs=47.6

Q ss_pred             ceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         30 NVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ...+.+|+++.|.|...+     .+.+.+.|+|++ ..+.        .+.+ .+.    ..+.|.|.+++.+|+|.|+|
T Consensus         4 ~~~~~~g~~~~l~Cp~~~~~~~~~~~p~i~Wyk~~-~~i~--------~~~~-~~~----~~~~L~I~~v~~~DsG~YtC   69 (92)
T cd05757           4 KQILFSTKGGKIVCPDLDDFKNENTLPPVQWYKDC-KLLE--------GDRK-RFV----KGSKLLIQNVTEEDAGNYTC   69 (92)
T ss_pred             eEEEeeccCCEEECCChHHccCCCCCCcEEEeECC-EECC--------CCcc-EEe----cCCEEEEeeCChhhCEEEEE
Confidence            467889999999998743     256899999954 4322        1111 111    12379999999999999999


Q ss_pred             EEecC
Q psy15734        105 QINTV  109 (314)
Q Consensus       105 ~~~~~  109 (314)
                      .+.+.
T Consensus        70 ~~~n~   74 (92)
T cd05757          70 KLTFT   74 (92)
T ss_pred             EEEec
Confidence            99764

Ig2_IL1R_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor (IL1R). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three IG-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta. This group also contains ILIR-like 1 (IL1

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=98.93  E-value=1.6e-08  Score=66.09  Aligned_cols=67  Identities=22%  Similarity=0.368  Sum_probs=49.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.+..++  ..+.+|++++|.|.+.+.+...+.|++++ ..+..        ...           .|.|.+++.+|+|.
T Consensus         2 P~l~~~~--~~v~~g~~~~l~C~~~~~p~~~~~w~~~~-~~~~~--------~~~-----------~~~~~~~~~~~~g~   59 (80)
T PF13895_consen    2 PVLSSSP--QSVEEGDSVTLTCSVSGNPPPQVQWYKNG-SPINS--------SQN-----------GLFIPNVSPEDSGN   59 (80)
T ss_dssp             -EEEEES--SEEETTSEEEEEEEEESSSSSEEEEEETT-EEEEE--------ESS-----------EEEESSEEGGGTEE
T ss_pred             cEEEccc--eEEeCCCcEEEEEEEEcccceeeeeeeee-eeeee--------eee-----------eeeeeeeccccCEE
Confidence            4444444  66899999999999998878899999944 33221        000           27778899999999


Q ss_pred             EEEEEecCC
Q psy15734        102 YMCQINTVP  110 (314)
Q Consensus       102 Y~C~~~~~~  110 (314)
                      |+|.+.+..
T Consensus        60 y~C~~~~~~   68 (80)
T PF13895_consen   60 YTCRASNGS   68 (80)
T ss_dssp             EEEEEEETT
T ss_pred             EEEEEEeCC
Confidence            999997644

...

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.92  E-value=2.1e-08  Score=68.54  Aligned_cols=80  Identities=23%  Similarity=0.170  Sum_probs=53.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeeee--ee----ecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHHK--VV----TQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~--~~----~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ++-+..+.+|+++.|.|.........+.|+|...    ..+......  ..    ...+|..+..+    ++|.|.+++.
T Consensus         4 e~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~n----gSL~I~~v~~   79 (105)
T cd05774           4 ELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPN----GSLLIQNVTQ   79 (105)
T ss_pred             eccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCC----CcEEEecCCc
Confidence            3445568899999999987655667999999532    122111110  00    12345555543    3899999999


Q ss_pred             CCCeEEEEEEecCC
Q psy15734         97 TDRGWYMCQINTVP  110 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~  110 (314)
                      +|+|.|+|.+.+..
T Consensus        80 ~D~G~Y~~~v~~~~   93 (105)
T cd05774          80 KDTGFYTLQTITTN   93 (105)
T ss_pred             ccCEEEEEEEEeCC
Confidence            99999999997654

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05713 Ig_MOG_like Immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG)

Probab=98.92  E-value=1.9e-08  Score=68.80  Aligned_cols=36  Identities=17%  Similarity=0.275  Sum_probs=32.0

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      ..+|+|.+++.+|+|.|+|.+.|..+..+..+.|+|
T Consensus        64 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~i~l~v   99 (100)
T cd05713          64 SVALRIHNVRASDEGLYTCFFQSDGFYEEATVELKV   99 (100)
T ss_pred             cEEEEEEcCChhhCEEEEEEEecCCcEEEEEEEEEE
Confidence            359999999999999999999998888788888876

Ig_MOG_like: immunoglobulin (Ig)-like domain of myelin oligodendrocyte glycoprotein (MOG). MOG, a minor component of the myelin sheath, is an important CNS-specific autoantigen, linked to the pathogenesis of multiple sclerosis (MS) and experimental autoimmune encephalomyelitis (EAE). It is a transmembrane protein having an extracellular Ig domain. MOG is expressed in the CNS on the outermost lamellae of the myelin sheath, and on the surface of oligodendrocytes, and may participate in the completion, compaction, and/or maintenance of myelin. This group also includes butyrophilin (BTN). BTN is the most abundant protein in bovine milk-fat globule membrane (MFGM).

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.92  E-value=7.4e-09  Score=69.75  Aligned_cols=74  Identities=16%  Similarity=0.165  Sum_probs=49.3

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEee-----eeee----ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIH-----HKVV----TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~-----~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      |++|+|+|.........+.|++..........     ....    ...+|+.+..+    ++|.|.+++.+|+|.|+|.+
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~----~sL~I~~l~~~DsG~Y~c~v   76 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN----GSLLIQNLTKEDSGTYTLQI   76 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC----ceEEEccCCchhcEEEEEEE
Confidence            78999999997767789999996533211110     0001    11234444332    58999999999999999999


Q ss_pred             ecCCCcc
Q psy15734        107 NTVPMTS  113 (314)
Q Consensus       107 ~~~~~~~  113 (314)
                      .......
T Consensus        77 ~~~~~~~   83 (92)
T cd05741          77 ISTNGVT   83 (92)
T ss_pred             EcCCCcE
Confidence            6554333

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05896 Ig1_IL1RAPL-1_like First immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1)

Probab=98.92  E-value=8.4e-09  Score=69.02  Aligned_cols=74  Identities=15%  Similarity=0.279  Sum_probs=48.9

Q ss_pred             cceEEEcCCcEEEEEEe-c----------CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         29 ANVTATVGKEALMACVV-E----------NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~-~----------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ....+.+||.+.|.|.. .          ......+.|||++...... .. ....+.|+.....     .|.|.++..+
T Consensus         8 ~~~~~~~GE~v~l~C~~~~~~~~~~~~~~~~~~~~v~WyK~~~~~~~~-~~-~~~~~~Ri~~~~~-----~Lwf~Pa~~e   80 (104)
T cd05896           8 KKYMVLAGEPVRIKCALFYGYIRTNYSMAQSAGLSLMWYKSSGDGEEP-IE-IIFDGVRMSKEED-----SIWFRPAELQ   80 (104)
T ss_pred             eeEEEcCCCeEEEECCCccccccccccccccCCceEEEEECCCCCCCC-Cc-ccccceeEEEeCC-----EEEEEeCChh
Confidence            45778999999999996 1          1123589999964221110 00 0011135444333     7999999999


Q ss_pred             CCeEEEEEEecC
Q psy15734         98 DRGWYMCQINTV  109 (314)
Q Consensus        98 d~G~Y~C~~~~~  109 (314)
                      |+|.|+|.+.|.
T Consensus        81 DSG~Y~C~~rN~   92 (104)
T cd05896          81 DSGLYTCVLRNS   92 (104)
T ss_pred             hCeEEEEEECCC
Confidence            999999999765

Ig1_ IL1RAPL-1_like: domain similar to the first immunoglobulin (Ig)-like domain of X-linked interleukin-1 receptor accessory protein-like 1 (IL1RAPL-1). IL-1 alpha and IL-1 beta are cytokines which participates in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds a second receptor designated type II (IL1R2). Mature IL1R1 consists of three Ig-like domains, a transmembrane domain, and a large cytoplasmic domain. Mature IL1R2 is organized similarly except that it has a short cytoplasmic domain. The latter does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of

>cd05774 Ig_CEACAM_D1 First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=98.91  E-value=9.6e-09  Score=70.17  Aligned_cols=86  Identities=16%  Similarity=0.131  Sum_probs=56.4

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eee---cC---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MII---TG---------DDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~---~~---------~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +.+....+.+|+++.|.|.....+...+.|+|....    .+.   ..         ..-+.....++     +|.|.++
T Consensus         3 ie~~p~~~~~G~~V~L~v~~~p~~~~~~~W~kg~~~~~~~~I~~y~~~~~~~~~gp~~~gR~~~~~ng-----SL~I~~v   77 (105)
T cd05774           3 IELVPPQVAEGENVLLLVHNLPENLLAYAWYKGKTVSPNFLIASYIISTNSSTPGPAYSGRETIYPNG-----SLLIQNV   77 (105)
T ss_pred             EeccCCcccCCCCEEEEecCCCCCceEEEEEcCCCCCCCEEEEEEECCCcccccCcccCCcEEEeCCC-----cEEEecC
Confidence            445556788999999998764444448899996321    110   00         01112233444     9999999


Q ss_pred             CCCCCeEEEEEEeeCC-CCceeEEEEEE
Q psy15734        244 LSHQFGSYRCVAVNAL-GETDGFIKVYV  270 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~-g~~~~~~~l~V  270 (314)
                      +.+|+|.|+|.+.+.. ......+.|.|
T Consensus        78 ~~~D~G~Y~~~v~~~~~~~~~~~v~l~V  105 (105)
T cd05774          78 TQKDTGFYTLQTITTNFQVEQATVHLQV  105 (105)
T ss_pred             CcccCEEEEEEEEeCCccEEEEEEEEEC
Confidence            9999999999999987 34455555543

IG_CEACAM_D1: immunoglobulin (Ig)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the D

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.91  E-value=1.1e-08  Score=69.28  Aligned_cols=76  Identities=16%  Similarity=0.326  Sum_probs=50.0

Q ss_pred             EcCCcEEEEEEecC-CCceEEEEEEcCceeEEEee----eeeeecC----cCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         34 TVGKEALMACVVEN-LREYKVAWVKMITQTILSIH----HKVVTQN----KRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        34 ~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~----~~~~~~~----~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..|++|+|+|.... .....+.|++.....+....    ......+    .|+.+   +..+++|.|.+++.+|+|.|.|
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~---~~~~~sL~I~~~~~~DsG~Y~c   78 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNF---SQNDYSLQISNLKMEDAGSYRA   78 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEe---cCCceeEEECCCchHHCEEEEE
Confidence            36999999999865 55678999996433333222    1111112    23333   2234689999999999999999


Q ss_pred             EEecCCCc
Q psy15734        105 QINTVPMT  112 (314)
Q Consensus       105 ~~~~~~~~  112 (314)
                      .+......
T Consensus        79 ~v~~~~~~   86 (97)
T cd05775          79 EINTKNGV   86 (97)
T ss_pred             EEEcCCCC
Confidence            99654433

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.91  E-value=2.1e-08  Score=70.71  Aligned_cols=83  Identities=14%  Similarity=0.298  Sum_probs=58.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-e---eEEEeeee-e-----eecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVEN--LREYKVAWVKMIT-Q---TILSIHHK-V-----VTQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~---~~~~~~~~-~-----~~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+  .+...+.||+... .   .+...... .     .....|+.+..+.. ..+.|.|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~   82 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDVGKSTSTLTIQ   82 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEECCCCEEEEEEE
Confidence            3567788999999999999976  5678999999632 1   12111110 0     01245777765543 56789999


Q ss_pred             eecCCCCeEEEEEEec
Q psy15734         93 DVQETDRGWYMCQINT  108 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~  108 (314)
                      +++.+|+|.|.|.+..
T Consensus        83 ~~~~~Dsg~Y~C~~~~   98 (116)
T cd04982          83 NLEKEDSATYYCAYWE   98 (116)
T ss_pred             ECCHHHCEEEEEEEec
Confidence            9999999999999853

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.90  E-value=3.2e-08  Score=68.50  Aligned_cols=87  Identities=20%  Similarity=0.239  Sum_probs=53.8

Q ss_pred             cCCcEEEEEEecCC------CceEEEEEEcCce----eE-EEe-ee-eee--ecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         35 VGKEALMACVVENL------REYKVAWVKMITQ----TI-LSI-HH-KVV--TQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        35 ~g~~~~l~C~~~~~------~~~~v~W~~~~~~----~~-~~~-~~-~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .|++++|+|.+...      ....|.|++....    .. ... .. ...  ...+|+.+........+|.|.+++.+|+
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~Ds   80 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRAHDLDASLVITDLRLEDY   80 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCCCCCcEEEEEccCChHHC
Confidence            48999999998654      3467999996421    11 111 00 001  1134666644333456899999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |.|.|.+.+. +.....+.|.|.
T Consensus        81 G~Y~C~v~~~~~~~~~~~~l~v~  103 (106)
T cd05877          81 GRYRCEVIDGLEDESVVVALRLR  103 (106)
T ss_pred             EEEEEEEEecccceEEEEEEEEE
Confidence            9999999653 333444455553

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05862 Ig1_VEGFR First immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R)

Probab=98.90  E-value=1.3e-08  Score=67.35  Aligned_cols=82  Identities=16%  Similarity=0.229  Sum_probs=50.2

Q ss_pred             CCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCc
Q psy15734         36 GKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMT  112 (314)
Q Consensus        36 g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~  112 (314)
                      |+++.|.|.+.+.  +...+.|.+.+........    ....+............|.|.+++.+|+|.|+|.+.+. +..
T Consensus         1 Ge~~~L~C~~~~~~~~~~~~~W~~p~~~~~~~~~----~~~~~~~~~~~~~~~s~L~I~~~~~~DsG~Y~C~a~n~~~~~   76 (86)
T cd05862           1 GEKLVLNCTARTELNVGIDFQWDYPGKKEQRAKS----VSENRRSLQEHTELSSTLTIENVTLSDLGRYTCTASSGQMIA   76 (86)
T ss_pred             CCcEEEEEEEEeCCCCcEEEEEEcCCccccccee----cccccccccccceeeeEEEEecCCcccCEEEEEEEeecceEe
Confidence            7899999999764  4578899886543211000    00001111111112348999999999999999999774 334


Q ss_pred             ceeEEEEEE
Q psy15734        113 SQKGYLQVV  121 (314)
Q Consensus       113 ~~~~~l~v~  121 (314)
                      .....|.|+
T Consensus        77 ~~~t~~~V~   85 (86)
T cd05862          77 KNSTIVIVH   85 (86)
T ss_pred             cccEEEEEe
Confidence            445556654

IG1_VEGFR: first immunoglobulin (Ig)-like domain of vascular endothelial growth factor (VEGF) receptor(R). The VEGFRs have an extracellular component with seven Ig-like domains, a transmembrane segment, and an intracellular tyrosine kinase domain interrupted by a kinase-insert domain. The VEGFR family consists of three members, VEGFR-1 (Flt-1), VEGFR-2 (KDR/Flk-1) and VEGFR-3 (Flt-4). VEGF_A interacts with both VEGFR-1 and VEGFR-2. VEGFR-1 binds strongest to VEGF, VEGF-2 binds more weakly. VEGFR-3 appears not to bind VEGF, but binds other members of the VEGF family (VEGF-C and -D). VEGFRs bind VEGFs with high affinity with the IG-like domains. VEGF-A is important to the growth and maintenance of vascular endothelial cells and to the development of new blood- and lymphatic-vessels in physiological and pathological states. VEGFR-2 is a major mediator of the mitogenic, angioge

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.90  E-value=2.3e-08  Score=65.19  Aligned_cols=71  Identities=15%  Similarity=0.207  Sum_probs=52.8

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ...+++.+|+++.|+|...+. ...+.|++++.. +        ..+.++.....     -|.|.+++.+|+|.|.|.+.
T Consensus         3 ~~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~-l--------~~~~r~~~~~~-----GLlI~~~~~~dsG~Y~C~s~   67 (85)
T cd05872           3 VKNRTVAPGADVVLPCQLRSN-LASPVWLFNGTP-L--------NAQFSYRVGTD-----GLLILVTSPEHSGTYRCYSE   67 (85)
T ss_pred             ceEEEEecCCCEEEECCCCCC-CccEEEEECCcc-c--------CCCcceEEeCC-----CCEEEECCHhhCEEEEEEEe
Confidence            356889999999999999875 459999995533 2        22345554443     38899999999999999986


Q ss_pred             cCCCcc
Q psy15734        108 TVPMTS  113 (314)
Q Consensus       108 ~~~~~~  113 (314)
                      ..+...
T Consensus        68 E~gf~~   73 (85)
T cd05872          68 EEGFQQ   73 (85)
T ss_pred             cCCCeE
Confidence            444443

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.89  E-value=5.2e-08  Score=68.39  Aligned_cols=84  Identities=23%  Similarity=0.453  Sum_probs=58.7

Q ss_pred             cCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCc----eeEEEe------eeeeeecCcCEEEEeC-CceeEEEEEee
Q psy15734         26 EPVANVTATVGKEALMACVVE-NLREYKVAWVKMIT----QTILSI------HHKVVTQNKRVSITFN-DHRSWFLHLRD   93 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~----~~~~~~------~~~~~~~~~~~~~~~~-~~~~~~L~i~~   93 (314)
                      .++..+.+.+|+++.|.|... ......+.|++...    ..+...      .........++.+..+ ....++|.|.+
T Consensus         6 ~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i~~   85 (114)
T PF07686_consen    6 QPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTIKN   85 (114)
T ss_dssp             EEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEESS
T ss_pred             EeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEECC
Confidence            457789999999999999998 55667999999543    112200      0011122346665544 33567899999


Q ss_pred             ecCCCCeEEEEEEecC
Q psy15734         94 VQETDRGWYMCQINTV  109 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~  109 (314)
                      ++.+|+|.|.|.+...
T Consensus        86 l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   86 LQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             ESGGGEEEEEEEEEES
T ss_pred             CCcCcCEEEEEEEEEC
Confidence            9999999999999654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=98.89  E-value=4.4e-09  Score=76.68  Aligned_cols=71  Identities=14%  Similarity=0.188  Sum_probs=54.9

Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEcc--ccccEeEEEEEeeccCC--CccceE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMS--RLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~--~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      +|.|.+++.+|+|.|.|.+.+..|.....+.|.|..+|...+......  .+....++|.|.+++++  .|.|.-
T Consensus         2 sL~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P~~~~i~W~~   76 (139)
T cd05771           2 SLTLPGLTVHDEGTYICSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYPLDVQVEWTR   76 (139)
T ss_pred             eEEECCCCHHHCEEEEEEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCCCCeEEEEEE
Confidence            799999999999999999999989999999999987754433322111  23445799999998664  688954

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05714 Ig_CSPGs_LP Immunoglobulin (Ig)-like domain of chondroitin sulfate proteoglycans (CSPGs), human cartilage link protein (LP) and similar proteins

Probab=98.89  E-value=4e-08  Score=68.00  Aligned_cols=88  Identities=19%  Similarity=0.251  Sum_probs=53.7

Q ss_pred             cCCcEEEEEEecCC------CceEEEEEEcC--c--e-eEEEeeeeee--ecC--cCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         35 VGKEALMACVVENL------REYKVAWVKMI--T--Q-TILSIHHKVV--TQN--KRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        35 ~g~~~~l~C~~~~~------~~~~v~W~~~~--~--~-~~~~~~~~~~--~~~--~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .|++++|+|.+...      ....+.|++..  .  . .+........  ...  .|+.+........+|.|.+++.+|+
T Consensus         1 ~G~~V~L~C~~~~~~~~~~~~~~~i~W~k~~~~~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~sD~   80 (106)
T cd05714           1 LGGNVTLPCRFHLEPALSAPHGPRIKWTKLESDGAKEVDVLVAIGGRVKVYGSGRVRVPLYPADPGDASLVITDLRLEDS   80 (106)
T ss_pred             CCCCEEEeEEeECCcccCCCCCcEEEEEEeCCCCCceEEEEEEcCCEEEEcCCCceEEEeeCCCCCcceEEECCCCHHHC
Confidence            48999999998653      35799999962  1  1 1111111111  111  2333222233456899999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEe
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      |.|.|.+.+. ......+.|.|..
T Consensus        81 G~Y~C~v~~~~~~~~~~v~L~V~~  104 (106)
T cd05714          81 GRYRCEVIDGIEDEQDTVELEVRG  104 (106)
T ss_pred             EEEEEEEEcCCCceEEEEEEEEEE
Confidence            9999999754 3335555666643

Ig_CSPGs_LP: immunoglobulin (Ig)-like domain similar to that found in chondroitin sulfate proteoglycans (CSPGs) and human cartilage link protein (LP). Included in this group are the CSPGs aggrecan, versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue.

>cd05877 Ig_LP_like Immunoglobulin (Ig)-like domain of human cartilage link protein (LP)

Probab=98.88  E-value=2e-08  Score=69.52  Aligned_cols=83  Identities=18%  Similarity=0.284  Sum_probs=56.6

Q ss_pred             cCccEEEEEEEeecC------CceeEEecCCCe-----e-eecCCc-------e--eeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        189 VSQTVELHCHTEAFP------ASLNYWTNEKGD-----M-IITGDD-------Y--EDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p------~p~~~W~~~~~~-----~-~~~~~~-------~--~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      .|++++|.|.....|      ...+.|++....     . ......       +  +...... .....+|.|.+++.+|
T Consensus         1 ~G~~vtL~C~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~~~~~sL~I~~v~~~D   79 (106)
T cd05877           1 RGGNVTLPCRYHYEPELSAPRKIRVKWTKLESDYLKEEDVLVAIGTRHKSYGSYQGRVFLRRA-HDLDASLVITDLRLED   79 (106)
T ss_pred             CCCcEEEEeEeECCCcCCCCccceEEEEEecCCCCeeEEEEEEcCcEEEeccCccCcEEecCC-CCCcEEEEEccCChHH
Confidence            489999999987764      356899986421     1 111100       1  1111100 0124589999999999


Q ss_pred             CeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        248 FGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +|.|.|.+.+..+.....+.|.|..
T Consensus        80 sG~Y~C~v~~~~~~~~~~~~l~v~~  104 (106)
T cd05877          80 YGRYRCEVIDGLEDESVVVALRLRG  104 (106)
T ss_pred             CEEEEEEEEecccceEEEEEEEEEE
Confidence            9999999999999889999888864

Ig_LP_like: immunoglobulin (Ig)-like domain similar to that that found in human cartilage link protein (LP). In cartilage, chondroitin-keratan sulfate proteoglycan (CSPG), aggrecan, forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.88  E-value=5.9e-08  Score=67.68  Aligned_cols=82  Identities=16%  Similarity=0.301  Sum_probs=54.1

Q ss_pred             CcceEEEcCCcEEEEEEecCC----CceEEEEEEc-Cce----eEEEe-eeeeee-c----CcCEEEEeCC-ceeEEEEE
Q psy15734         28 VANVTATVGKEALMACVVENL----REYKVAWVKM-ITQ----TILSI-HHKVVT-Q----NKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~-~~~----~~~~~-~~~~~~-~----~~~~~~~~~~-~~~~~L~i   91 (314)
                      +..+.+..|+++.|+|.+...    +...+.|.+. ...    .+... ...... .    .+|+.+..+. .+..+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            457789999999999999652    3479999442 211    11111 111111 1    2366655433 34568999


Q ss_pred             eeecCCCCeEEEEEEecC
Q psy15734         92 RDVQETDRGWYMCQINTV  109 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+++.+|+|.|+|.+.+.
T Consensus        85 ~nv~~sD~G~Y~C~v~n~  102 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNP  102 (116)
T ss_pred             ccCCcccCEEEEEEEEcC
Confidence            999999999999999764

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.87  E-value=2.2e-08  Score=69.29  Aligned_cols=80  Identities=18%  Similarity=0.341  Sum_probs=55.0

Q ss_pred             eEEEcCCcEEEEEEecCC-CceEEEEEEcCc--e--eEEEeeee----eeecCcCEEEEeCCc-eeEEEEEeeecCCCCe
Q psy15734         31 VTATVGKEALMACVVENL-REYKVAWVKMIT--Q--TILSIHHK----VVTQNKRVSITFNDH-RSWFLHLRDVQETDRG  100 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~--~--~~~~~~~~----~~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G  100 (314)
                      +.+.+|++++|.|.+... +...+.|++...  .  .+......    ......|+.+..... ..++|.|.+++.+|+|
T Consensus         1 ~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v~~~D~G   80 (105)
T cd00099           1 LSVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTRDSSKSSFTLTISSLQPEDSA   80 (105)
T ss_pred             CeecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEEeccCCEEEEEECCCCHHHCE
Confidence            357899999999999875 677999999643  1  11111110    012235666655432 5678999999999999


Q ss_pred             EEEEEEecCC
Q psy15734        101 WYMCQINTVP  110 (314)
Q Consensus       101 ~Y~C~~~~~~  110 (314)
                      .|.|.+.+..
T Consensus        81 ~Y~C~v~~~~   90 (105)
T cd00099          81 VYYCAVSLSG   90 (105)
T ss_pred             EEEEEEecCC
Confidence            9999996543

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.87  E-value=5.7e-08  Score=68.37  Aligned_cols=83  Identities=20%  Similarity=0.373  Sum_probs=52.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCc-----eeEEEeee-eeee-cC----cCEEEEeC-CceeEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR----EYKVAWVKMIT-----QTILSIHH-KVVT-QN----KRVSITFN-DHRSWFLH   90 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~-----~~~~~~~~-~~~~-~~----~~~~~~~~-~~~~~~L~   90 (314)
                      .|..+.+.+|++++|+|.+....    ...+.|++...     ..+..... .... ..    .|+.+..+ ..+..+|+
T Consensus         4 ~p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   83 (116)
T cd05715           4 TPREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIV   83 (116)
T ss_pred             cCCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEE
Confidence            36678899999999999985432    36799987432     11111110 1011 11    34444432 12346899


Q ss_pred             EeeecCCCCeEEEEEEecC
Q psy15734         91 LRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~  109 (314)
                      |.+++.+|+|.|.|.+.+.
T Consensus        84 I~~v~~~D~G~Y~C~v~~~  102 (116)
T cd05715          84 IHNLQFTDNGTYTCDVKNP  102 (116)
T ss_pred             EeeCCcccCEEEEEEEEeC
Confidence            9999999999999999754

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.86  E-value=9.3e-08  Score=66.18  Aligned_cols=86  Identities=20%  Similarity=0.305  Sum_probs=53.0

Q ss_pred             cCCcEEEEEEecCCC------------ceEEEEEEcCc---eeEE-Eeeeeee---ecCcCEEEEeC--CceeEEEEEee
Q psy15734         35 VGKEALMACVVENLR------------EYKVAWVKMIT---QTIL-SIHHKVV---TQNKRVSITFN--DHRSWFLHLRD   93 (314)
Q Consensus        35 ~g~~~~l~C~~~~~~------------~~~v~W~~~~~---~~~~-~~~~~~~---~~~~~~~~~~~--~~~~~~L~i~~   93 (314)
                      .|++++|+|......            .+.+.|++...   ..+. .......   .-.+|+.+...  .....+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999986432            46999998532   1222 1111111   11236666541  23456899999


Q ss_pred             ecCCCCeEEEEEEecC-CCcceeEEEEE
Q psy15734         94 VQETDRGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      ++.+|+|.|+|.+... ......+.|.|
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v  108 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQV  108 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEE
Confidence            9999999999999743 23333344444

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05900 Ig_Aggrecan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan

Probab=98.86  E-value=3.4e-08  Score=68.35  Aligned_cols=84  Identities=17%  Similarity=0.291  Sum_probs=54.9

Q ss_pred             cCccEEEEEEEeecC------------CceeEEecCCC---eeee-c-C------Cce--eeeEee-CCeeeEEEEEEee
Q psy15734        189 VSQTVELHCHTEAFP------------ASLNYWTNEKG---DMII-T-G------DDY--EDSRLI-NGYSCHMTLKIRS  242 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p------------~p~~~W~~~~~---~~~~-~-~------~~~--~~~~~~-~~~~~~s~L~i~~  242 (314)
                      .|++++|.|......            .+.|.|++...   ..+. . .      ..|  +.+... .......+|+|.+
T Consensus         1 ~G~~VtLpC~~~~~~~~~~~~~~~~~~~~~I~W~k~~~g~~~~ii~~~~~~~~~~~~f~~R~sl~~~~~~~~~asL~I~n   80 (112)
T cd05900           1 LGSSLLIPCYFQDPIAKDPGAPTVAPLSPRIKWSFISKEKESVLLVATEGKVRVNTEYLDRVSLPNYPAIPSDATLEITE   80 (112)
T ss_pred             CCCcEEEeeEEeCCcCccccccccCCCCCEEEEEEecCCCccEEEEEECCeEEECccccCeEEecccCCCCCCcEEEEee
Confidence            489999999987543            35889998421   1111 1 1      111  111111 0011345999999


Q ss_pred             cCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      ++.+|+|.|.|.+.+........+.|.|..
T Consensus        81 l~~sDsG~Y~C~V~~g~~~~~~~v~l~v~g  110 (112)
T cd05900          81 LRSNDSGTYRCEVMHGIEDNYDTVEVQVKG  110 (112)
T ss_pred             cccccCEEEEEEEecCCCCceeEEEEEEEe
Confidence            999999999999998777777777777753

Ig_Aggrecan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), aggrecan. These aggregates contribute to the tissue's load bearing properties. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Aggrecan has a wide distribution in connective tissue and extracellular matrices. Members of the vertebrate HPLN (hyaluronan/HA and proteoglycan binding link) protein family are physically linked adjacent to CSPG genes.

>cd05879 Ig_P0 Immunoglobulin (Ig)-like domain of Protein zero (P0)

Probab=98.86  E-value=5.3e-08  Score=67.89  Aligned_cols=85  Identities=14%  Similarity=0.095  Sum_probs=53.5

Q ss_pred             CCcceeecCccEEEEEEEeec----CCceeEEecCC--------------Ceeee-cCCce--eeeEeeCCeeeEEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAF----PASLNYWTNEK--------------GDMII-TGDDY--EDSRLINGYSCHMTLKI  240 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~----p~p~~~W~~~~--------------~~~~~-~~~~~--~~~~~~~~~~~~s~L~i  240 (314)
                      +....+..|+++.|.|.....    +...+.|.+..              +.... ....+  ++....+......+|.|
T Consensus         5 ~~ev~a~~G~~v~L~C~f~~~~~~~~~~~v~W~~~~~~~~~~~~v~~y~~g~~~~~~~~~f~~Rv~f~g~~~~~daSI~I   84 (116)
T cd05879           5 DREVYGTVGSDVTLSCSFWSSEWISDDISFTWHYQPDGSRDAISIFHYGKGQPYIDDVGPFKERIEWVGNPSRKDGSIVI   84 (116)
T ss_pred             cceEEEEcCCcEEEEEEEecCCCCCCcEEEEEEEcCCCCCccEEEEEeCCCceecccccCccCceEEeCCCCcCeeEEEE
Confidence            345678899999999999764    34588994321              11110 00111  11111121234569999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        241 RSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      .+++.+|.|+|+|.+.|..+......
T Consensus        85 ~nv~~sD~G~Y~C~v~n~p~~~~~~~  110 (116)
T cd05879          85 HNLDYTDNGTFTCDVKNPPDIVGKSS  110 (116)
T ss_pred             ccCCcccCEEEEEEEEcCCCcCCcee
Confidence            99999999999999999877544433

Ig_P0ex: immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin.

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.85  E-value=9.3e-08  Score=65.16  Aligned_cols=84  Identities=19%  Similarity=0.312  Sum_probs=51.4

Q ss_pred             CcEEEEEEecCCC---ceEEEEEEcCce---eEEEeee---eeee--cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         37 KEALMACVVENLR---EYKVAWVKMITQ---TILSIHH---KVVT--QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        37 ~~~~l~C~~~~~~---~~~v~W~~~~~~---~~~~~~~---~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ++++|+|.+....   ...|.|+|....   .+.....   ....  ...|+.+........+|.|.+++.+|+|.|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~I~~v~~~D~G~Y~C~   80 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSLEDATISISNLRLEDEGNYICE   80 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCCCceEEEEccCCcccCEEEEEE
Confidence            5789999996543   468999996532   1111110   0011  133555444333456899999999999999999


Q ss_pred             EecC--CCcceeEEEEE
Q psy15734        106 INTV--PMTSQKGYLQV  120 (314)
Q Consensus       106 ~~~~--~~~~~~~~l~v  120 (314)
                      +...  +.......|.|
T Consensus        81 v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          81 FATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEeCCCCcEEEEEEEEe
Confidence            8643  33344444444

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.84  E-value=2.9e-08  Score=68.66  Aligned_cols=83  Identities=17%  Similarity=0.260  Sum_probs=56.0

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCc----eeEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLR-EYKVAWVKMIT----QTILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~----~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ...|..+.+.+|++++|.|.+.+.. ...+.|||...    ..+...... ......|+..... ...+.|.|.+++++|
T Consensus         4 ~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~~~~~D   82 (106)
T cd04980           4 TQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSGSGS-GTDFTLTISRVEPED   82 (106)
T ss_pred             EECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEEecc-CCEEEEEECCCChHH
Confidence            4557788999999999999997654 56899998642    112111110 0111245655432 345689999999999


Q ss_pred             CeEEEEEEec
Q psy15734         99 RGWYMCQINT  108 (314)
Q Consensus        99 ~G~Y~C~~~~  108 (314)
                      +|.|.|.+.+
T Consensus        83 sg~Y~Ca~~~   92 (106)
T cd04980          83 AAVYYCQQYG   92 (106)
T ss_pred             CEEEEEEEeC
Confidence            9999999853

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.84  E-value=9.8e-08  Score=66.87  Aligned_cols=84  Identities=21%  Similarity=0.347  Sum_probs=52.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcC---ce--eEEEeee-eeeecC----cCEEEEeC-CceeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR----EYKVAWVKMI---TQ--TILSIHH-KVVTQN----KRVSITFN-DHRSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~---~~--~~~~~~~-~~~~~~----~~~~~~~~-~~~~~~L~i   91 (314)
                      .+..+.+.+|++++|.|.+...+    ...+.|++..   ..  .+..... ......    .|+.+..+ .....+|+|
T Consensus         4 ~~~~v~~~~G~~v~L~C~~s~~~~~~~~~~i~W~~~~~~~~~~~~v~~~~~~~~~~~~~~f~~R~~~~~~~~~~~~sL~I   83 (115)
T cd05880           4 TSKEVEAVNGTDVRLKCTFSSSAPIGDTLVITWNFRPLDGGREESVFYYHKRPYPPPDGRFKGRVVWDGNIMRRDASILI   83 (115)
T ss_pred             cCceEEEEcCCCEEEEEEEEeCCCCCCcEEEEEEEECCCCCceeEEEEECCCccccCcccccCeEEEecCCcCCceEEEE
Confidence            45678999999999999985422    3579998631   11  1211111 001112    23333322 223457999


Q ss_pred             eeecCCCCeEEEEEEecCC
Q psy15734         92 RDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~  110 (314)
                      .+++.+|+|.|+|.+.+.+
T Consensus        84 ~~v~~~D~G~Y~C~v~~~~  102 (115)
T cd05880          84 WQLQPTDNGTYTCQVKNPP  102 (115)
T ss_pred             eeCChhhCEEEEEEEEeCC
Confidence            9999999999999997643

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.84  E-value=3.1e-08  Score=66.34  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=51.0

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+. ..|..|++|+|.|... .+...+.|++++........      ...  .....+.|.+++.+|+|.|+|..
T Consensus         3 P~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~~~~~------~~~--~~~~~f~i~~v~~~~~G~Y~C~~   72 (91)
T cd05751           3 PSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFAVKKP------PEP--QNKAKFFIPSMKREHAGRYRCYY   72 (91)
T ss_pred             CEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcccccc------CCC--ceeEEEEccCCChhHCEEEEEEE
Confidence            44444443 3678999999999886 66778889987543221100      001  11238999999999999999999


Q ss_pred             eeC
Q psy15734        256 VNA  258 (314)
Q Consensus       256 ~n~  258 (314)
                      .+.
T Consensus        73 ~~~   75 (91)
T cd05751          73 RSG   75 (91)
T ss_pred             ECC
Confidence            886

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.83  E-value=9.7e-08  Score=66.27  Aligned_cols=88  Identities=19%  Similarity=0.319  Sum_probs=56.0

Q ss_pred             cCCcEEEEEEecCCC----------ceEEEEEEcCc-ee--EEEeeeeee----ecCcCEEEEeC--CceeEEEEEeeec
Q psy15734         35 VGKEALMACVVENLR----------EYKVAWVKMIT-QT--ILSIHHKVV----TQNKRVSITFN--DHRSWFLHLRDVQ   95 (314)
Q Consensus        35 ~g~~~~l~C~~~~~~----------~~~v~W~~~~~-~~--~~~~~~~~~----~~~~~~~~~~~--~~~~~~L~i~~~~   95 (314)
                      .|++++|+|.....+          ...+.|++... ..  +........    .-.+|+.+..+  .....+|.|.+++
T Consensus         1 ~G~~V~LpC~~~~~~~~~~~~~~~~~~~i~W~k~~~~~~~~v~~~~~~~~~~~~~f~gR~~~~~~~~~~~~asL~I~~l~   80 (110)
T cd05878           1 LSSSVLLPCYFTLPPALPPPSNAPESPRIKWTKLSGQKEVTVLVAQDGVVKVGQEYQGRVSLPNYPENRGDASLEISRLR   80 (110)
T ss_pred             CCCCEEEeeEeeCCccccccccCCCCCEEEEEEecCCCcEEEEEEECCEEEecccccCeEEeccCCCCCCcEEEEECCCC
Confidence            489999999996532          37899999632 11  111111111    11246555432  2344589999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEEe
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      .+|+|.|.|.+... ......+.|.|..
T Consensus        81 ~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          81 SSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             hhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            99999999999654 4556666777654

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=98.83  E-value=1.6e-08  Score=70.44  Aligned_cols=76  Identities=18%  Similarity=0.243  Sum_probs=53.3

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeec-------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIIT-------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~-------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ..+....+.+|++++|.|.+.+ +.+.+.|++....    .+..             ..++......   ....+|.|.+
T Consensus         3 Q~p~~~~v~~G~~v~l~C~~~~-~~~~v~Wykq~~g~~~~~l~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~~L~I~~   78 (110)
T cd05899           3 QSPRYLIKGRGQSVTLRCSQTS-GHDNMYWYRQDPGKGLQLLFYSNGGSLNEEEGDPKDRFSASRPS---LTRSSLTIKS   78 (110)
T ss_pred             ECCCceEEcCCCcEEEEEEECC-CCCEEEEEEECCCCCcEEEEEEcCCCceEecCccCCceEEECcC---CCccEEEECC
Confidence            4566778999999999999988 7788999986421    1110             1122211111   1245899999


Q ss_pred             cCCCCCeEEEEEEeeCC
Q psy15734        243 ILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~  259 (314)
                      ++.+|+|.|.|.+.+..
T Consensus        79 ~~~~Dsg~Y~Ca~~~~~   95 (110)
T cd05899          79 AEPEDSAVYLCASSLGG   95 (110)
T ss_pred             CChhhCEEEEEEeeCCC
Confidence            99999999999998754

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05878 Ig_Aggrecan_like Immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)

Probab=98.82  E-value=9.8e-08  Score=66.24  Aligned_cols=37  Identities=22%  Similarity=0.415  Sum_probs=33.6

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      .+|+|.+++.+|+|.|.|.+.......+..+.|.|..
T Consensus        72 asL~I~~l~~sD~G~Y~C~v~~~~~~~~~~v~l~V~g  108 (110)
T cd05878          72 ASLEISRLRSSDSGVYRCEVMHGIEDEQDTVPLEVTG  108 (110)
T ss_pred             EEEEECCCChhhCEEEEEEEEeCCCcceEEEEEEEEE
Confidence            4899999999999999999999888888999998864

Ig_Aggrecan_like: immunoglobulin (Ig)-like domain of the aggrecan-like chondroitin sulfate proteoglycan core protein (CSPG)s. Included in this group are the Ig domains of other CSPGs: versican, and neurocan. In CSPGs this Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, aggrecan forms cartilage link protein stabilized aggregates with hyaluronan (HA). These aggregates contribute to the tissue's load bearing properties. Aggrecan and versican have a wide distribution in connective tissue and extracellular matrices. Neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substi

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.82  E-value=8.2e-08  Score=65.17  Aligned_cols=85  Identities=25%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             CCcEEEEEEecCC-CceEEEEEEcCce---eEEEeee-e--ee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         36 GKEALMACVVENL-REYKVAWVKMITQ---TILSIHH-K--VV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        36 g~~~~l~C~~~~~-~~~~v~W~~~~~~---~~~~~~~-~--~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      |++++|+|..... ....|.|+|..+.   .+..... .  ..  .-.+|+.+...+....+|.|.+++.+|+|.|.|.+
T Consensus         1 G~~vtL~C~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~nv~~~D~G~Y~C~~   80 (97)
T cd05846           1 GGNVTLSCNLTLPEEVLQVTWQKIQGSSPENIATYSEKYGVKIQPSYFRRRSITSLGLNSTSITIWNVTLEDEGCYKCIF   80 (97)
T ss_pred             CCcEEEEEEeCCCCeeEEEEEEEcCCCCceEEEEEcccCCcccCCCccCeEEEcCCCCCccEEEEeCCceeeeEEEEEEE
Confidence            7899999997543 3357999986432   2221111 0  01  11224444333344568999999999999999998


Q ss_pred             ecC--CCcceeEEEEE
Q psy15734        107 NTV--PMTSQKGYLQV  120 (314)
Q Consensus       107 ~~~--~~~~~~~~l~v  120 (314)
                      ...  +.....+.|.|
T Consensus        81 ~~~p~g~~~~~~~L~v   96 (97)
T cd05846          81 NTFPDGSKSGTMCLTV   96 (97)
T ss_pred             EeCCCCCeeeEEEEEE
Confidence            654  33344455555

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>smart00408 IGc2 Immunoglobulin C-2 Type

Probab=98.82  E-value=2.8e-08  Score=61.36  Aligned_cols=61  Identities=18%  Similarity=0.330  Sum_probs=44.3

Q ss_pred             cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +|+++.|.|.+.+.+.+.+.|++++ ..+.          .......   ....|.|.+++.+|+|.|+|.+.+.
T Consensus         1 ~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~----------~~~~~~~---~~~~L~i~~~~~~d~G~Y~C~~~n~   61 (63)
T smart00408        1 EGQSVTLTCPAEGDPVPNITWLKDG-KPLP----------ESNRLSA---SGSTLTIKSVSLEDSGEYTCVAENS   61 (63)
T ss_pred             CCceEEEEeeCccCCCCeEEEEECC-EECC----------CCCEEec---CCcEEEEeeCCcccCEEEEEEEecC
Confidence            5889999999887788899999954 3221          1111111   1227999999999999999999653

>cd05718 Ig1_PVR_like First immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.80  E-value=5.7e-08  Score=66.22  Aligned_cols=79  Identities=19%  Similarity=0.256  Sum_probs=52.1

Q ss_pred             ccEEEEEEEeecC---CceeEEecCCCe--ee---ec---C----C--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        191 QTVELHCHTEAFP---ASLNYWTNEKGD--MI---IT---G----D--DYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       191 ~~~~l~C~~~g~p---~p~~~W~~~~~~--~~---~~---~----~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      ++++|.|.....+   ...+.|++....  ..   ..   .    .  +.++....+.. ...+|.|.+++.+|+|.|.|
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~~~-~~~sL~I~~v~~~D~G~Y~C   79 (98)
T cd05718           1 ESVTLECSFPVPGPVQITQVTWMKITGGSKQNIAVFHPQYGISIPPSYEGRVSFLNSSL-EDATISISNLRLEDEGNYIC   79 (98)
T ss_pred             CCEEEEeEeeCCCCceEEEEEEeeECCCCCEEEEEEecCCCcccCcCcCceEEEeCCCC-CceEEEEccCCcccCEEEEE
Confidence            5789999998765   447899996532  10   00   0    0  11111111110 24599999999999999999


Q ss_pred             EEee-CCCCceeEEEEEE
Q psy15734        254 VAVN-ALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n-~~g~~~~~~~l~V  270 (314)
                      .+.+ +.|.....+.|.|
T Consensus        80 ~v~~~~~g~~~~~~~l~V   97 (98)
T cd05718          80 EFATFPQGNRQKVTTLTV   97 (98)
T ss_pred             EEEeCCCCcEEEEEEEEe
Confidence            9975 6678888888776

Ig1_PVR_like: domain similar to the first immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), that result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane, may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus "c

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.79  E-value=7.4e-08  Score=65.63  Aligned_cols=80  Identities=25%  Similarity=0.455  Sum_probs=53.9

Q ss_pred             eEEEcCCcEEEEEEecC-CCceEEEEEEcCcee---EEEe-eeeeeecCcCEEEEeC-CceeEEEEEeeecCCCCeEEEE
Q psy15734         31 VTATVGKEALMACVVEN-LREYKVAWVKMITQT---ILSI-HHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~---~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      +.+.+|++++|+|.... .....+.|+|.....   +... ........+|+.+..+ ....+.|.|.+++.+|+|.|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C   81 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSLTDDPDNGVFTVTLNQLRKEDAGWYWC   81 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEEEecCCCCEEEEEEcCCCHHHCEEEEE
Confidence            56889999999999865 356789999964321   1111 1111122456666533 2345689999999999999999


Q ss_pred             EEecCC
Q psy15734        105 QINTVP  110 (314)
Q Consensus       105 ~~~~~~  110 (314)
                      .+...+
T Consensus        82 ~~~~~~   87 (98)
T cd05716          82 GVGDDG   87 (98)
T ss_pred             EcccCC
Confidence            985433

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=98.79  E-value=1.5e-07  Score=62.82  Aligned_cols=85  Identities=15%  Similarity=0.146  Sum_probs=57.1

Q ss_pred             cceEEEcCCcEEEEEEecCCCceE-EEEEEcCceeEEEeeeeeeecCcCEEEEeCC--ceeEEEEEeeecCCCCeEEEEE
Q psy15734         29 ANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNKRVSITFND--HRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ..+.|.+|+++.|.|.+.++|.++ +.|.+++.......       +..+......  .-...|.+.+++.+|.|.|+|.
T Consensus        11 ~~~~v~~gE~~~L~V~ieAYP~p~~~~W~~~~~~l~~~~-------~~~~~~~~~~~~rY~S~L~L~Rlk~~E~G~YTf~   83 (101)
T cd05860          11 TTIFVNAGENLDLIVEYEAYPKPEHQQWIYMNRTLTNTS-------DHYVKSRNESNNRYVSELHLTRLKGTEGGTYTFL   83 (101)
T ss_pred             ceEEEECCCCEEEEEEEEeCCCCeeeEEEcCCcccCccc-------cceeEEeccCceEEEEEEEEeecChhhCcEEEEE
Confidence            467899999999999999999987 99998643211110       1011111111  1123799999999999999999


Q ss_pred             EecC-CCcceeEEEEE
Q psy15734        106 INTV-PMTSQKGYLQV  120 (314)
Q Consensus       106 ~~~~-~~~~~~~~l~v  120 (314)
                      +.|. ...+..+.|.|
T Consensus        84 a~N~~~~~s~tF~l~v   99 (101)
T cd05860          84 VSNSDASASVTFNVYV   99 (101)
T ss_pred             EECCCCeEEEEEEEEE
Confidence            9774 33444555554

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.78  E-value=8.6e-08  Score=67.73  Aligned_cols=82  Identities=16%  Similarity=0.234  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCC------CceEEEEEEcCce----eEEEeeeee----eecCcCEEEEeC-CceeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENL------REYKVAWVKMITQ----TILSIHHKV----VTQNKRVSITFN-DHRSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~------~~~~v~W~~~~~~----~~~~~~~~~----~~~~~~~~~~~~-~~~~~~L~i   91 (314)
                      .|..+.+.+|++|+|+|.....      ....+.||+....    .+.......    ....+|+.+..+ ...+.+|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            4667899999999999987532      2367999996532    111111100    112246666533 445568999


Q ss_pred             eeecCCCCeEEEEEEec
Q psy15734         92 RDVQETDRGWYMCQINT  108 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~  108 (314)
                      .+++.+|+|.|.|++..
T Consensus        85 ~~l~~~Dsg~Y~C~~~~  101 (119)
T cd05712          85 SDAQPEDSGKYFFRVEL  101 (119)
T ss_pred             ccCChhhCeEEEEEEEc
Confidence            99999999999999854

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.78  E-value=1.7e-07  Score=69.06  Aligned_cols=96  Identities=17%  Similarity=0.283  Sum_probs=64.7

Q ss_pred             CcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeee--eeeec--CcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHH--KVVTQ--NKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~--~~~~~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      ...++|.+|+++.|.|... +.....+.|+|.++ .+.....  ..+..  .+|+.+.........|+|.+++.+|+|.|
T Consensus        22 ~~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~-~IatY~~~g~~i~~~Fk~Rve~mS~s~~~StItIknVt~sDeGcY  100 (189)
T PHA02987         22 FVKITVSEHVNVKISCNKTSSFNSILITWKKNNK-TIAGYGPCGPVIVDKFKNKIEYLSKSFNESTILIKNVSLKDNGCY  100 (189)
T ss_pred             eEEEEEcCCCCEEEEEecCCCCccceEEEEEcCC-CEEEEecCCcEEChhhcCeEEEeccCCCcceEEEEeCChhhCeEE
Confidence            3467899999999999984 55678999999643 3322211  11111  23666433334445899999999999999


Q ss_pred             EEEEecC--C-CcceeEEEEEEeCC
Q psy15734        103 MCQINTV--P-MTSQKGYLQVVVPP  124 (314)
Q Consensus       103 ~C~~~~~--~-~~~~~~~l~v~~~p  124 (314)
                      .|....-  + ..+....|.|..+.
T Consensus       101 ~C~F~tfp~G~~~~gt~CLtVt~~~  125 (189)
T PHA02987        101 TCIFNTLLSKNNEKGVVCLNVTTDS  125 (189)
T ss_pred             EEEEEecCCCCCceeEEEEEEEchh
Confidence            9998543  3 44556677777643

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.77  E-value=6.3e-08  Score=68.20  Aligned_cols=84  Identities=24%  Similarity=0.478  Sum_probs=57.6

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCce-eE--EEeeeee--eecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQ-TI--LSIHHKV--VTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~-~~--~~~~~~~--~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      ...+..+.+.+|++++|.|..... ....+.|||.... .+  .......  ...++|+.+..+ ....++|.|.+++.+
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~~~~~   82 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNFQKAQKSISLTISALQLE   82 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEEeccCCEEEEEECCCCHH
Confidence            445678899999999999998653 5578999996321 11  1111011  122457776542 334568999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        83 Dsg~Y~C~~~~   93 (116)
T cd07706          83 DSAKYFCALST   93 (116)
T ss_pred             HCEEEEEEEEC
Confidence            99999999864

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05775 Ig_SLAM-CD84_like_N N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like

Probab=98.77  E-value=3.5e-08  Score=66.88  Aligned_cols=83  Identities=18%  Similarity=0.140  Sum_probs=54.3

Q ss_pred             ecCccEEEEEEEee-cCCceeEEecCCCeeeecCCc---eeeeEee----CCe---eeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        188 FVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDD---YEDSRLI----NGY---SCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       188 ~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~---~~~~~~~----~~~---~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .+|++|+|.|.... .....+.|++...........   .......    +..   ....+|.|.+++.+|+|.|.|.+.
T Consensus         2 ~~G~sVtL~c~~~~~~~~~~v~W~~~~~~~i~~~~~~~~~~~~~~~~~f~~R~~~~~~~~sL~I~~~~~~DsG~Y~c~v~   81 (97)
T cd05775           2 ILGGSVTLPLNIPDGTEIESITWSFNTSLAIITPGEETAPEIIVTDPSYKERVNFSQNDYSLQISNLKMEDAGSYRAEIN   81 (97)
T ss_pred             ccCCeEEEeCCCCCCcEEEEEEEecCCEeEEEecCCCCCCccEEeCCCceeeEEecCCceeEEECCCchHHCEEEEEEEE
Confidence            47999999998865 556688999864333322221   0000000    000   113589999999999999999999


Q ss_pred             eCCCCc-eeEEEEEE
Q psy15734        257 NALGET-DGFIKVYV  270 (314)
Q Consensus       257 n~~g~~-~~~~~l~V  270 (314)
                      +..|.. ...+.|.|
T Consensus        82 ~~~~~~~~~~f~L~v   96 (97)
T cd05775          82 TKNGVTITKEFTLHI   96 (97)
T ss_pred             cCCCCeEEEEEEEEe
Confidence            887655 56666665

Ig_SLAM-CD84_like_N: The N-terminal immunoglobulin (Ig)-like domain of the signaling lymphocyte activation molecule (SLAM) family, CD84_like. The SLAM family is a group of immune-cell specific receptors that can regulate both adaptive and innate immune responses. Members of this group include proteins such as CD84, SLAM (CD150), Ly-9 (CD229), NTB-A (ly-108, SLAM6), 19A (CRACC), and SLAMF9. The genes coding for the SLAM family are nested on chromosome 1, in humans at 1q23, and in mice at 1H2. The SLAM family is a subset of the CD2 family, which also includes CD2 and CD58 located on chromosome 1 at 1p13 in humans. In mice, CD2 is located on chromosome 3, and there is no CD58 homolog. The SLAM family proteins are organized as an extracellular domain with either two or four Ig-like domains, a single transmembrane segment, and a cytoplasmic region

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.76  E-value=3.6e-08  Score=66.80  Aligned_cols=73  Identities=18%  Similarity=0.291  Sum_probs=53.6

Q ss_pred             ecCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCc-eeee-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDD-YEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..|+.+.|.|.+.|+ |. ..+.|++++.. +..... .... ..++.|...+.|.|......|.|.|+|+|.+....
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~g~~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~~~~~~~~y~C~v~h~~~~   87 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKNGKE-LTSGVTTTPPVPNSDGTYSVSSQLTVSPSDWNSGDTYTCVVTHESLP   87 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEECCEE-CCCceeccccccCCCCCEEEEEEEEECHHHhCCCCCEEEEEEeCCCC
Confidence            468999999999998 53 58999997443 332222 2222 23334788889999888888999999999997654

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>cd05880 Ig_EVA1 Immunoglobulin (Ig)-like domain of epithelial V-like antigen 1 (EVA)

Probab=98.75  E-value=1.4e-07  Score=66.06  Aligned_cols=35  Identities=20%  Similarity=0.316  Sum_probs=27.4

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCc--eeEEEEE
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGET--DGFIKVY  269 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~  269 (314)
                      ..+|.|.+++.+|+|.|.|.+.|..+..  ...+.|.
T Consensus        78 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  114 (115)
T cd05880          78 DASILIWQLQPTDNGTYTCQVKNPPDVHGPIGEIRLR  114 (115)
T ss_pred             ceEEEEeeCChhhCEEEEEEEEeCCCCCCCccEEEEe
Confidence            3489999999999999999999977642  3444444

Ig_EVA: immunoglobulin (Ig) domain of epithelial V-like antigen 1 (EVA). EVA is also known as myelin protein zero-like 2. EVA is an adhesion molecule, which may play a role in structural organization of the thymus and early lymphocyte development.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.75  E-value=1.9e-07  Score=60.15  Aligned_cols=78  Identities=13%  Similarity=0.170  Sum_probs=52.0

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC-ceeEEEEEE
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE-TDGFIKVYV  270 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V  270 (314)
                      +.|.|.+.| .|.+.|.|++++.+ +...... ......++...++|.+..-...|...|+|+|.|+.-. ......|.|
T Consensus         2 ~~L~C~s~gSkP~A~I~W~k~~~~-l~~~~~~-~~~~~~~~t~~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~~~~L~V   79 (82)
T cd05883           2 IELNCTAMASKPAATIRWFKGNKE-LTGKSTV-EETWSRMFTVTSQLMLKVTKEDDGVPVICLVDHPAVKDLQTQRYLEV   79 (82)
T ss_pred             EEEEEEecCCCCCCEEEEEECCEE-CcCcccc-eeccCCCcEEEEEEEEECchhhCCCEEEEEEcCcccCCceeeEEEEE
Confidence            689999976 67889999997533 3222111 1123345677889999777777777999999996632 345556666


Q ss_pred             Ee
Q psy15734        271 NL  272 (314)
Q Consensus       271 ~~  272 (314)
                      ..
T Consensus        80 ~y   81 (82)
T cd05883          80 QY   81 (82)
T ss_pred             EE
Confidence            43

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.74  E-value=2.8e-07  Score=62.86  Aligned_cols=84  Identities=20%  Similarity=0.273  Sum_probs=51.8

Q ss_pred             CcEEEEEEecCCC---ceEEEEEEcCce----eEEEee----eeee-ecCcCEEEEeC-CceeEEEEEeeecCCCCeEEE
Q psy15734         37 KEALMACVVENLR---EYKVAWVKMITQ----TILSIH----HKVV-TQNKRVSITFN-DHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        37 ~~~~l~C~~~~~~---~~~v~W~~~~~~----~~~~~~----~~~~-~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      .+++|+|......   ...|.|+|....    .+....    ...+ ...+|..+..+ .....+|.|.+++.+|+|.|.
T Consensus         1 ~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~~Rv~f~~~~~~~~~sL~I~nv~~sD~GtY~   80 (100)
T cd05888           1 GDTRLPCRYNVSDGETVVQVLWIRENAGGVEEEIALLHFKYGQTEFHAYEGRVRFETPNPIADGALILRNAVQADEGKYK   80 (100)
T ss_pred             CCEEEEeEEecCCCCcEEEEEEEEccCCCCcEEEEEEeccCCcccCCCccCcEEEeCCCCCCceEEEEecCccccceEEE
Confidence            3689999986433   458999995322    121111    0111 11246666543 344568999999999999999


Q ss_pred             EEEecC--CCcceeEEEEE
Q psy15734        104 CQINTV--PMTSQKGYLQV  120 (314)
Q Consensus       104 C~~~~~--~~~~~~~~l~v  120 (314)
                      |.+.+-  |..+..+.|.|
T Consensus        81 C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          81 CRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             EEEEeCCCCCeeeEEEEEe
Confidence            998653  33344445554

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.74  E-value=3.8e-07  Score=61.07  Aligned_cols=84  Identities=23%  Similarity=0.342  Sum_probs=53.3

Q ss_pred             CcEEEEEEecC-CCceEEEEEEcCce--eEEEeeeee----e--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         37 KEALMACVVEN-LREYKVAWVKMITQ--TILSIHHKV----V--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        37 ~~~~l~C~~~~-~~~~~v~W~~~~~~--~~~~~~~~~----~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ++++|+|.... ....+|.|.|....  ...+.....    +  .-.+|+.+...+....+|.|.|++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~~~~~~d~sl~i~nv~~~D~G~Y~C~v~   80 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFKNYSLLDATIMLENVGFSDIGVYICKAV   80 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEcCCCCCccEEEEeCCCccccEEEEEEEE
Confidence            47899999964 34479999985431  111111110    1  123466665444455689999999999999999996


Q ss_pred             cC--CCcceeEEEEE
Q psy15734        108 TV--PMTSQKGYLQV  120 (314)
Q Consensus       108 ~~--~~~~~~~~l~v  120 (314)
                      .-  |.......|.|
T Consensus        81 tfP~G~~~~~~~l~~   95 (96)
T cd05887          81 TFPLGNTQSSTTVTV   95 (96)
T ss_pred             eCCCCCeeEEEEEEE
Confidence            65  34444455554

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05741 Ig_CEACAM_D1_like First immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) and similar proteins

Probab=98.74  E-value=8.5e-08  Score=64.52  Aligned_cols=75  Identities=16%  Similarity=0.201  Sum_probs=50.8

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeec--------C-----Cce--eeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIIT--------G-----DDY--EDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--------~-----~~~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |++|+|.|.....+...+.|++........        .     ..+  +.....+     .+|.|.+++.+|+|.|+|.
T Consensus         1 G~~VtL~c~~~~~~~~~i~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~R~~~~~~-----~sL~I~~l~~~DsG~Y~c~   75 (92)
T cd05741           1 GESVTLPVSNLPENLQEITWYKGKDKSVEAEIASYIATNSTVFGPAYSGRETIYPN-----GSLLIQNLTKEDSGTYTLQ   75 (92)
T ss_pred             CCcEEEEcccCCCCCEEEEEECCCCCCcceEEEEEecCCceeECCCcCCeEEEcCC-----ceEEEccCCchhcEEEEEE
Confidence            789999999887777799999975322110        0     011  1122222     3999999999999999999


Q ss_pred             EeeCCCCc-eeEEEEE
Q psy15734        255 AVNALGET-DGFIKVY  269 (314)
Q Consensus       255 a~n~~g~~-~~~~~l~  269 (314)
                      +....+.. ...+.|.
T Consensus        76 v~~~~~~~~~~~~~l~   91 (92)
T cd05741          76 IISTNGVTENAKFFLR   91 (92)
T ss_pred             EEcCCCcEEEEEEEEE
Confidence            99876433 4455444

Ig_CEACAM_D1_like : immunoglobulin (IG)-like domain 1 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily-like. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surf

>cd05715 Ig_P0-like Immunoglobulin (Ig)-like domain of Protein zero (P0) and similar proteins

Probab=98.74  E-value=1.4e-07  Score=66.30  Aligned_cols=88  Identities=16%  Similarity=0.182  Sum_probs=53.9

Q ss_pred             CCcceeecCccEEEEEEEeecC----CceeEEecCCCe-----eee----------cCCcee--eeEeeCCeeeEEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP----ASLNYWTNEKGD-----MII----------TGDDYE--DSRLINGYSCHMTLKI  240 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p----~p~~~W~~~~~~-----~~~----------~~~~~~--~~~~~~~~~~~s~L~i  240 (314)
                      |....+.+|++++|.|......    ...+.|++....     .+.          ...++.  +....+......+|+|
T Consensus         5 p~~v~v~~G~~vtL~C~~s~~~~~~~~~~v~W~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   84 (116)
T cd05715           5 PREVYAVNGSDVRLKCTFSSSEPISDDISVTWSFQPEGSGDTESIFHYHKGPYYPLKDGRFKDRVEWVGNPSRKDASIVI   84 (116)
T ss_pred             CCeEEEEcCCCeEEEeEEeCCCCcCCceEEEEEEecCCCCCcEEEEEEcCCccccccCccccCcEEEecCCcCCeeEEEE
Confidence            4556788999999999886543    246889864320     111          011111  1111111112468999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCc--eeEEEEE
Q psy15734        241 RSILSHQFGSYRCVAVNALGET--DGFIKVY  269 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~  269 (314)
                      .+++.+|+|.|.|.+.|.....  ...+.|.
T Consensus        85 ~~v~~~D~G~Y~C~v~~~~~~~~~~~~~~~~  115 (116)
T cd05715          85 HNLQFTDNGTYTCDVKNPPDIVGKPGEIRLR  115 (116)
T ss_pred             eeCCcccCEEEEEEEEeCCCCCCCccEEEEe
Confidence            9999999999999999876542  2345544

Ig_P0ex-like: domain similar to the immunoglobulin (Ig) domain of Protein zero (P0). P0 accounts for over 50% of the total protein in peripheral nervous system (PNS) myelin. P0 is a single-pass transmembrane glycoprotein with a highly basic intracellular domain and an extracellular Ig domain. The extracellular domain of P0 (P0-ED) is similar to the Ig variable domain, carrying one acceptor sequence for N-linked glycosylation. P0 plays a role in membrane adhesion in the spiral wraps of the myelin sheath. The intracellular domain is thought to mediate membrane apposition of the cytoplasmic faces and may, through electrostatic interactions, interact directly with lipid headgroups. It is thought that homophilic interactions of the P0 extracellular domain mediate membrane juxtaposition in the extracellular space of PNS myelin. This group also contains the Ig domain of Sodium channel subunit beta-2

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.73  E-value=7.4e-08  Score=65.61  Aligned_cols=76  Identities=16%  Similarity=0.215  Sum_probs=51.8

Q ss_pred             EEEcCCcEEEEEEecCC--CceEEEEEEcCce-e---EEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         32 TATVGKEALMACVVENL--REYKVAWVKMITQ-T---ILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        32 ~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      .+.+|++++|.|.....  ....+.||+.... .   +....... .....|+....+. ....|.|.+++.+|+|.|.|
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~Dsg~Y~C   80 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGSKSG-NTASLTISGAQTEDEADYYC   80 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEEccC-CEEEEEECCCChhhCEEEEE
Confidence            57899999999998664  4567999986531 1   22111110 1113466665544 45689999999999999999


Q ss_pred             EEec
Q psy15734        105 QINT  108 (314)
Q Consensus       105 ~~~~  108 (314)
                      .+.+
T Consensus        81 ~~~~   84 (98)
T cd04984          81 QVWD   84 (98)
T ss_pred             EEcc
Confidence            9853

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05872 Ig_Sema4B_like Immunoglobulin (Ig)-like domain of the class IV semaphorin Sema4B

Probab=98.73  E-value=7.3e-08  Score=62.80  Aligned_cols=76  Identities=16%  Similarity=0.139  Sum_probs=52.7

Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ....+..|+++.|.|...+. .+.+.|++++..+ ....++  .....      -|.|.+++.+|+|.|.|.+. +.|-.
T Consensus         4 ~~~tv~~g~~v~L~C~~~s~-~A~v~W~~ng~~l-~~~~r~--~~~~~------GLlI~~~~~~dsG~Y~C~s~-E~gf~   72 (85)
T cd05872           4 KNRTVAPGADVVLPCQLRSN-LASPVWLFNGTPL-NAQFSY--RVGTD------GLLILVTSPEHSGTYRCYSE-EEGFQ   72 (85)
T ss_pred             eEEEEecCCCEEEECCCCCC-CccEEEEECCccc-CCCcce--EEeCC------CCEEEECCHhhCEEEEEEEe-cCCCe
Confidence            34678999999999999875 6699999975543 222222  22222      57799999999999999986 44544


Q ss_pred             eeEEEEE
Q psy15734        263 DGFIKVY  269 (314)
Q Consensus       263 ~~~~~l~  269 (314)
                      ..-+.+.
T Consensus        73 ~~~~~y~   79 (85)
T cd05872          73 QLVASYS   79 (85)
T ss_pred             EEEEEEE
Confidence            4333333

Ig_Sema4B_like; Immunoglobulin (Ig)-like domain of Sema4B_like. Sema4B is a Class IV semaphorin. Semaphorins are classified based on structural features additional to the Sema domain. Sema4B has extracellular Sema and Ig domains, a transmembrane domain and a short cytoplasmic domain. Sema4B has been shown to preferentially regulate the development of the postsynaptic specialization at the glutamatergic synapses. This cytoplasmic domain includes a PDZ-binding motif upon which the synaptic localization of Sem4B is dependent. Sema4B is a ligand of CLCP1, CLCP1 was identified in an expression profiling analysis, which compared a highly metastic lung cancer subline with its low metastic parental line. Sema4B was shown to promote CLCP1 endocytosis, and their interaction is a potential target for therapeutic intervention of metastasis.

>cd05888 Ig1_Nectin-4_like Frst immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor) and similar proteins

Probab=98.73  E-value=2e-07  Score=63.61  Aligned_cols=35  Identities=20%  Similarity=0.413  Sum_probs=30.4

Q ss_pred             EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV  270 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V  270 (314)
                      .+|.|.+++.+|+|.|.|.+.+ +.|..+..+.|.|
T Consensus        64 ~sL~I~nv~~sD~GtY~C~v~~~p~g~~~~~~~L~V   99 (100)
T cd05888          64 GALILRNAVQADEGKYKCRVITFPAGNFEAELVLTV   99 (100)
T ss_pred             eEEEEecCccccceEEEEEEEeCCCCCeeeEEEEEe
Confidence            4899999999999999999998 6676677777776

Ig1_Nectin-4_like: domain similar to the first immunoglobulin (Ig) domain of nectin-4 (also known as poliovirus receptor related protein 4, or as LNIR receptor). Nectin-4 belongs to the nectin family, which is comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example nectin-4 trans-interacts with nectin-1. Nectin-4 has also been shown to interact with the actin filament-binding protein, afadin. Unlike the other nectins, which are widely expressed in adult tissues, nectin-4 is mainly expressed during embryogenesis, and is not detected in normal adult

>cd05751 Ig1_LILRB1_like First immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1) and similar proteins

Probab=98.72  E-value=1.1e-07  Score=63.68  Aligned_cols=74  Identities=9%  Similarity=0.141  Sum_probs=50.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.+...+. ..|.+|++|+|.|... .+...+.|++++.... .        . +   .........+.|.+++.+|+|
T Consensus         2 kP~L~a~p~-~vV~~G~~VtL~C~~~-~~~~~f~l~k~g~~~~-~--------~-~---~~~~~~~~~f~i~~v~~~~~G   66 (91)
T cd05751           2 KPSLWAEPS-SVVPLGKPVTLRCQGP-YGAVEYRLYREGSTFA-V--------K-K---PPEPQNKAKFFIPSMKREHAG   66 (91)
T ss_pred             CCEEEecCC-CccCCCCcEEEEEecC-CCCCEEEEEECCCCcc-c--------c-c---cCCCceeEEEEccCCChhHCE
Confidence            355555554 4688999999999885 4567889999553211 0        0 0   001112237999999999999


Q ss_pred             EEEEEEecC
Q psy15734        101 WYMCQINTV  109 (314)
Q Consensus       101 ~Y~C~~~~~  109 (314)
                      .|+|.+.+.
T Consensus        67 ~Y~C~~~~~   75 (91)
T cd05751          67 RYRCYYRSG   75 (91)
T ss_pred             EEEEEEECC
Confidence            999999653

Ig1_LILRB1_like: domain similar to the first immunoglobulin (Ig)-like domain found in Leukocyte Ig-like receptors (LILR)B1 (also known as LIR-1). This group includes, LILRA5 (LIR9), an activating natural cytotoxicity receptor NKp46, and the immune-type receptor glycoprotein VI (GPVI). LILRs are a family of immunoreceptors expressed on expressed on T and B cells, on monocytes, dendritic cells, and subgroups of natural killer (NK) cells. The human LILR family contains nine proteins (LILRA1-3,and 5, and LILRB1-5). From functional assays, and as the cytoplasmic domains of various LILRs, for example LILRB1 (LIR-1), LILRB2 (LIR-2), and LILRB3 (LIR-3) contain immunoreceptor tyrosine-based inhibitory motifs (ITIMs) it is thought that LIR proteins are inhibitory receptors. Of the eight LIR family proteins, only LIR-1(LILRB1), and LIR-2 (LILRB2),

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.70  E-value=5.4e-07  Score=60.39  Aligned_cols=85  Identities=24%  Similarity=0.345  Sum_probs=55.3

Q ss_pred             CcEEEEEEecC-CCceEEEEEEcCc---eeEEEee---eeeee--cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         37 KEALMACVVEN-LREYKVAWVKMIT---QTILSIH---HKVVT--QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        37 ~~~~l~C~~~~-~~~~~v~W~~~~~---~~~~~~~---~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ++++|.|.... ....+|.|.|...   ..+....   ...+.  -.+|+.+........+|.|.|++.+|+|.|.|.+.
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~iavy~~~~g~~~~~~y~~Rv~f~~~~~~d~sI~i~nvt~~D~G~Y~C~~~   80 (96)
T cd05889           1 EKMKLECVYPKTGVLIQVSWTKHNGSHKENIAVYHPIYGMHIEDKYRGRVYFLNSTREDMSLSFNNATEEDVGLYCCSLV   80 (96)
T ss_pred             CCEEEEeEcCCCCcEEEEEEEEcCCCCCceEEEEECCCCCEECccccCeEEEecCCCCccEEEEcCCCcccCEEEEEEEE
Confidence            47899999864 3457899998643   2232211   11111  12466655433345689999999999999999997


Q ss_pred             cCCCcceeEEEEEE
Q psy15734        108 TVPMTSQKGYLQVV  121 (314)
Q Consensus       108 ~~~~~~~~~~l~v~  121 (314)
                      ..+..+....+.|.
T Consensus        81 t~P~g~~~~~i~~~   94 (96)
T cd05889          81 TYPQGSWEKVIEVV   94 (96)
T ss_pred             eCCCCCeEEEEEEE
Confidence            76666666666654

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.70  E-value=3.3e-07  Score=63.20  Aligned_cols=38  Identities=18%  Similarity=0.354  Sum_probs=33.6

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      ..+|.|.+++.+|+|.|.|.+.......+..+.|.|..
T Consensus        71 ~asL~i~nv~~~D~G~Y~C~v~~g~~~~~~~v~L~V~g  108 (110)
T cd05902          71 NASLVLSRLRYSDSGTYRCEVVLGINDEQDTVPLEVTG  108 (110)
T ss_pred             eEEEEECCCCHHHCEEEEEEEEECCcccEEEEEEEEEE
Confidence            45999999999999999999999777778888888864

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=98.68  E-value=8.2e-08  Score=66.42  Aligned_cols=77  Identities=16%  Similarity=0.282  Sum_probs=52.8

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +...|....+.+|++++|.|.+.+.. ...+.|++...    ..+...         .++..  ...  .....|.|.++
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~r~~~--~~~--~~~~~L~I~~~   78 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSVSSNYLAWYQQKPGQAPKLLIYGASTLASGTPSRFSG--SGS--GTDFTLTISRV   78 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCCCCCcEEEEEECCCCCcEEEEECccccCCCCCCCEEE--ecc--CCEEEEEECCC
Confidence            45566777899999999999998765 67889997531    111110         11211  111  12357999999


Q ss_pred             CCCCCeEEEEEEeeC
Q psy15734        244 LSHQFGSYRCVAVNA  258 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~  258 (314)
                      +.+|+|.|.|.+.+.
T Consensus        79 ~~~Dsg~Y~Ca~~~~   93 (106)
T cd04980          79 EPEDAAVYYCQQYGT   93 (106)
T ss_pred             ChHHCEEEEEEEeCC
Confidence            999999999998653

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.67  E-value=1.6e-07  Score=61.49  Aligned_cols=69  Identities=14%  Similarity=0.186  Sum_probs=46.7

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +.|.|.+.+ .|.+.+.|++++.. +............+.|...+.|.+.....+|.+.|+|+|.|.....
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~~~-l~~~~~~~~~~~~~~~~~~s~l~~~~~~~d~g~~~~C~v~h~~l~~   71 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGDKE-LKGVKLKEEDENGKTFTVTSSLRFQVDREDDGAPIICRVDHPALKS   71 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECCEE-ccCceeeEecCCCCEEEEEEEEEEEcchhhCCCEEEEEEeChhcCC
Confidence            689999976 58899999997543 3222211111122236677788887777777889999999977543

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=98.67  E-value=9.5e-08  Score=67.32  Aligned_cols=77  Identities=18%  Similarity=0.338  Sum_probs=52.4

Q ss_pred             cCCCcceeecCccEEEEEEEee--cCCceeEEecCCCe----eee--------------cCCceeeeEeeCCeeeEEEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEA--FPASLNYWTNEKGD----MII--------------TGDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g--~p~p~~~W~~~~~~----~~~--------------~~~~~~~~~~~~~~~~~s~L~  239 (314)
                      +.+....+.+|++++|.|.+.+  .+.+.+.|++....    .+.              ...++.+....  ......|.
T Consensus         3 Q~p~~~~~~~G~~v~l~C~~~~~~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~r~~~~~~~--~~~~~~L~   80 (116)
T cd04982           3 QPQLSITREESKSVTISCKVSGIDFSTTYIHWYRQKPGQALERLLYVSSTSTQRKLSGGTKNKFEARKDV--GKSTSTLT   80 (116)
T ss_pred             CcCCeEEeCCCCCEEEEEEEeCCCccccEEEEEEECCCCCCEEEEEEecCCCcEEeCcccCCCEEEEEEC--CCCEEEEE
Confidence            3456678899999999999987  67889999985311    111              01222221111  11245899


Q ss_pred             EeecCCCCCeEEEEEEeeC
Q psy15734        240 IRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~  258 (314)
                      |.+++.+|+|.|.|.+...
T Consensus        81 I~~~~~~Dsg~Y~C~~~~~   99 (116)
T cd04982          81 IQNLEKEDSATYYCAYWES   99 (116)
T ss_pred             EEECCHHHCEEEEEEEecC
Confidence            9999999999999998643

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.67  E-value=5.9e-07  Score=60.74  Aligned_cols=84  Identities=19%  Similarity=0.329  Sum_probs=52.5

Q ss_pred             CcEEEEEEecCC-C---ceEEEEEEcCc--e-eEEEeeee---ee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         37 KEALMACVVENL-R---EYKVAWVKMIT--Q-TILSIHHK---VV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        37 ~~~~l~C~~~~~-~---~~~v~W~~~~~--~-~~~~~~~~---~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      .+++|+|..... +   ..+|.|.+...  . .+......   ..  .-.+|+.+........+|.|.+++.+|+|.|.|
T Consensus         1 ~~v~L~C~f~~~~~~~~~~~V~W~k~~~~~~~~va~y~~~~g~~~~~~f~~Rv~f~~~~~~daSi~i~nl~~~D~G~Y~C   80 (99)
T cd05886           1 TDVVLHCSFINPLPPVKITQVTWQKLTNGSKQNVAIYNPSMGVSVLPPYRERVTFKNPSFEDGTISLSRLELEDEGVYIC   80 (99)
T ss_pred             CcEEEEeEeecCCCCCCeEEEEEEECCCCCceEEEEECCcCCcccCccccCcEEEcCCCCCcceEEEcCCccccCEEEEE
Confidence            368999999642 2   24799988521  1 22111110   01  123566665444455689999999999999999


Q ss_pred             EEecC--CCcceeEEEEE
Q psy15734        105 QINTV--PMTSQKGYLQV  120 (314)
Q Consensus       105 ~~~~~--~~~~~~~~l~v  120 (314)
                      .+.+.  +..+..+.|.|
T Consensus        81 ~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          81 EFATFPTGNRESQLNLTV   98 (99)
T ss_pred             EEEeCCCCCeEEEEEEEE
Confidence            99773  44455555655

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>PHA03376 BARF1; Provisional

Probab=98.66  E-value=7.3e-07  Score=65.44  Aligned_cols=119  Identities=13%  Similarity=0.058  Sum_probs=70.1

Q ss_pred             cceeecCccEEEEEEEe---ecCCceeEEecCC----Ceeee-cCC-------ceeee--EeeCCeeeEEEEEEeecCCC
Q psy15734        184 LEGAFVSQTVELHCHTE---AFPASLNYWTNEK----GDMII-TGD-------DYEDS--RLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~---g~p~p~~~W~~~~----~~~~~-~~~-------~~~~~--~~~~~~~~~s~L~i~~~~~~  246 (314)
                      .+.+..|+++.|+|.-+   ..+...|.|++++    ...+. .+.       .++..  ...+.  .+.+|.|.+++.+
T Consensus        20 pVta~VGEda~LsC~lnp~ssa~~MrIrWqKs~p~~~~VvL~~~ggdVv~~QmEyRGrtD~~~~~--gnvsLvI~~l~lS   97 (221)
T PHA03376         20 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA--NTFFLVVTAANIS   97 (221)
T ss_pred             chhheeCCcEEEEecccCccCCCceEEEEEecCCCCCCEEEEEcCCeeeeeeeccccEEEEEecC--CeEEEEEEeeeec
Confidence            45678999999999775   2355688999942    11111 111       11111  10111  2458999999999


Q ss_pred             CCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEE----ccccccEeEEEEEeeccCCCccce
Q psy15734        247 QFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRK----MSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~----~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|.|+|............-.|.+..+  -.|.+..    ....+.-.++|...++|-|.++|-
T Consensus        98 DdGtY~C~fQkge~~~~k~ehLt~V~~--~~Lsv~a~~~dFp~~~~~~i~C~sggfP~P~~~Wl  159 (221)
T PHA03376         98 HDGNYLCRMKLGETEVTKQEHLSVVKP--LTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL  159 (221)
T ss_pred             CCceEEEEEEcCCCceeeeeeeeeeec--ceEEEEeccccCCCCCeeEEEEecCCcCCchheec
Confidence            999999999876544433323322211  1122211    011233469999888999999993

>cd05886 Ig1_Nectin-1_like First immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=98.66  E-value=4.1e-07  Score=61.50  Aligned_cols=35  Identities=17%  Similarity=0.308  Sum_probs=32.0

Q ss_pred             EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV  270 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V  270 (314)
                      .+|.|.+++.+|.|.|+|.+.+ +.|..+..+.|.|
T Consensus        63 aSi~i~nl~~~D~G~Y~C~v~t~P~g~~~~~~~L~V   98 (99)
T cd05886          63 GTISLSRLELEDEGVYICEFATFPTGNRESQLNLTV   98 (99)
T ss_pred             ceEEEcCCccccCEEEEEEEEeCCCCCeEEEEEEEE
Confidence            3999999999999999999999 7888888888877

Ig1_Nectin-1_like: domain similar to the first immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. In addition nectins heterophilically trans-interact with other CAMs such as nectin-like molecules (Necls), nectin-1 for example, has been shown to trans-interact with Necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.66  E-value=1e-06  Score=60.94  Aligned_cols=86  Identities=19%  Similarity=0.314  Sum_probs=54.0

Q ss_pred             CCcEEEEEEecCC-----------CceEEEEEEcC--------c-ee-EEEeeeeee---ecCcCEEEEeCC--ceeEEE
Q psy15734         36 GKEALMACVVENL-----------REYKVAWVKMI--------T-QT-ILSIHHKVV---TQNKRVSITFND--HRSWFL   89 (314)
Q Consensus        36 g~~~~l~C~~~~~-----------~~~~v~W~~~~--------~-~~-~~~~~~~~~---~~~~~~~~~~~~--~~~~~L   89 (314)
                      |.+++|+|.+.-.           ..+.|.|++-.        . .. +.+......   ...+|..+....  ....+|
T Consensus         2 ~g~v~LPC~f~~~p~~p~~~~~~~~~~rIkW~~~~~~~~g~~~~e~~Vlv~~~g~~~~~~~y~gRv~l~~~~~~~g~asL   81 (117)
T cd05901           2 SGSVVLPCRFSTLPTLPPSVITTSEFLRIKWTKIEVDKNGKDHKETTVLVAQNGIIKIGQEYMGRVSVPSHPEDQGDASL   81 (117)
T ss_pred             CCCEEEeeEEEecCCCCCcccCCCCCcEEEEEEecccccccCCCccEEEEEECCEEEECCcccCcEEeeccCCcCCceEE
Confidence            6889999998622           24689999851        0 11 122221111   223577665432  234589


Q ss_pred             EEeeecCCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         90 HLRDVQETDRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .|.+++.+|+|.|.|.+... ......+.|.|.
T Consensus        82 ~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~  114 (117)
T cd05901          82 TIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVS  114 (117)
T ss_pred             EEcccccccCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999999999654 334455566664

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd00099 IgV Immunoglobulin variable domain (IgV)

Probab=98.64  E-value=1.6e-07  Score=64.95  Aligned_cols=73  Identities=19%  Similarity=0.372  Sum_probs=50.6

Q ss_pred             eeecCccEEEEEEEeec-CCceeEEecCCCe----eeec------------CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        186 GAFVSQTVELHCHTEAF-PASLNYWTNEKGD----MIIT------------GDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~----~~~~------------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      .+.+|++++|.|.+.+. +...+.|++....    .+..            ..++.+..  +......+|.|.+++.+|+
T Consensus         2 ~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~i~~~~~~~~~~~~~~~~r~~~~~--~~~~~~~sL~I~~v~~~D~   79 (105)
T cd00099           2 SVSEGESVTLSCTYSGSFSSYYIFWYRQKPGKGPELLIYISSNGSQYAGGVKGRFSGTR--DSSKSSFTLTISSLQPEDS   79 (105)
T ss_pred             eecCCCCEEEEEEEeCCcCcceEEEEEECCCCCCEEEEEEeCCCCccCccCCCcEEEEE--eccCCEEEEEECCCCHHHC
Confidence            47789999999999987 7778999985431    1110            11111111  1111345899999999999


Q ss_pred             eEEEEEEeeCCC
Q psy15734        249 GSYRCVAVNALG  260 (314)
Q Consensus       249 G~Y~C~a~n~~g  260 (314)
                      |.|.|.+.+..+
T Consensus        80 G~Y~C~v~~~~~   91 (105)
T cd00099          80 AVYYCAVSLSGG   91 (105)
T ss_pred             EEEEEEEecCCC
Confidence            999999998765

IgV: Immunoglobulin variable domain (IgV). Members of the IgV family are components of immunoglobulin (Ig) and T cell receptors. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. Within the variable domain, there are regions of even more variability called the hypervariable or complementarity-determining regions (CDRs) which are responsible for antigen binding. A predominant feature of most Ig domains is the disulfide bridge connecting 2 beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05901 Ig_Versican Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican

Probab=98.64  E-value=1.2e-06  Score=60.59  Aligned_cols=38  Identities=21%  Similarity=0.411  Sum_probs=34.5

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      ..+|.|.+++.+|+|.|.|++.+........+.|.|..
T Consensus        78 ~asL~i~~v~~sD~G~Y~C~V~~g~~~~~~~v~L~V~G  115 (117)
T cd05901          78 DASLTIVKLRASDAGVYRCEVMHGIEDTQDTVSLDVSG  115 (117)
T ss_pred             ceEEEEcccccccCEEEEEEEEECCcccEEEEEEEEEE
Confidence            35999999999999999999999998889999998864

Ig_Versican: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), versican. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Like aggrecan, versican has a wide distribution in connective tissue and extracellular matrices. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many different tissues. Members of the vertebrate HPLN (hyaluronan/HA

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.61  E-value=2.3e-07  Score=63.76  Aligned_cols=75  Identities=23%  Similarity=0.477  Sum_probs=50.5

Q ss_pred             EEEcCCcEEEEEEecCCCceEEEEEEcCce---e---EEEeee--eee-e----cCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         32 TATVGKEALMACVVENLREYKVAWVKMITQ---T---ILSIHH--KVV-T----QNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        32 ~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~---~---~~~~~~--~~~-~----~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .+.+|++|+|.|.........+.||+....   .   +.....  ... .    ...|+...... ..+.|.|.+++.+|
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~l~~~~~~~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~sD   80 (104)
T cd05720           2 DAELGQKVELKCEVLNSSPTGCSWLFQPPGSAPQPTFLVYLSGSSKITWDEEELSSKRFSGSRSS-NSFVLTLKNFQKEN   80 (104)
T ss_pred             cccCCCeEEEEEEecCCCCCcEEEEEeCCCCCCCCEEEEEEeCCCCeeeccccCCCceEEEEecC-CEEEEEECCCCHHH
Confidence            367899999999986655568999997532   1   221111  110 1    13455554433 55689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        81 sgtY~Ca~~   89 (104)
T cd05720          81 EGYYFCSVA   89 (104)
T ss_pred             CEEEEEEEc
Confidence            999999974

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=98.60  E-value=4.3e-07  Score=59.48  Aligned_cols=68  Identities=10%  Similarity=0.130  Sum_probs=47.9

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeC--CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLIN--GYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~--~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +.|+|.+.| +|.+.|.|++++ ..+... ........+  .|...+.|.|.....+|...|+|+|.+.....
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g-~~l~~~-~~~~~~~~~~~t~~~~s~l~~~~~~~d~g~~~tC~v~h~~l~~   72 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGD-QELEGA-PTSVLEDGNGKTFTVSSSVEFQVTREDDGAEITCSVGHESLHD   72 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECC-EECCCc-ceeEEECCCCCEEEEEEEEEEEecchhCCCEEEEEEECcccCC
Confidence            689999987 488999999975 333222 222322322  36667888887777888889999999977543

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.59  E-value=2.1e-07  Score=65.27  Aligned_cols=81  Identities=22%  Similarity=0.335  Sum_probs=54.0

Q ss_pred             EEcCCCcceeecCccEEEEEEEe-ecCCceeEEecCCC---e-eee-cCCc---------e--eeeEeeCCeeeEEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKG---D-MII-TGDD---------Y--EDSRLINGYSCHMTLKI  240 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~---~-~~~-~~~~---------~--~~~~~~~~~~~~s~L~i  240 (314)
                      +..++....+.+|+++.|.|... ......+.|++.+.   . .+. ....         +  +.....+......+|.|
T Consensus         4 vt~~~~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~i   83 (114)
T PF07686_consen    4 VTQPPSPVTVQEGESVTLPCSYSSSSNQSSVYWYRQSPGQGPQLIIRYSLSSTNETPTPSYSGRFTFSGNGSQNNFSLTI   83 (114)
T ss_dssp             EEEEESEEEEETTSEEEEEEEEESSSSGSEEEEEEEETTSEEEEEEEEETTEEEEEEETTETTTEEEEEETTTTEEEEEE
T ss_pred             EEEeCCeEEEecCCCEEEEEEEeCCCCcceEEEEEECccccceeeeeeccceeeeccccceeeeeeeeecccCCeEEEEE
Confidence            34456778899999999999999 55667889998433   1 111 0000         0  01111111122458999


Q ss_pred             eecCCCCCeEEEEEEeeC
Q psy15734        241 RSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+++.+|+|.|.|.+...
T Consensus        84 ~~l~~~DsG~Y~C~v~~~  101 (114)
T PF07686_consen   84 KNLQPSDSGTYFCQVSTS  101 (114)
T ss_dssp             SSESGGGEEEEEEEEEES
T ss_pred             CCCCcCcCEEEEEEEEEC
Confidence            999999999999999887

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.58  E-value=5e-07  Score=60.27  Aligned_cols=72  Identities=15%  Similarity=0.262  Sum_probs=47.8

Q ss_pred             CccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        190 SQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       190 g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |+.+.+.|.+ .++|+|.+.|+.+++...............+.++..+.|.+..-...+...++|.|.+..-.
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S~l~~~~~~~~~~~~~~C~~~~~~~~   86 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSSTLTLTPTREDHGKTLTCRASHPALS   86 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEEEEEEETTGGGTTEEEEEEEEETTCC
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEEEEEEEcChHHCCeEEEEEEECCccC
Confidence            7899999976 56899999999986554111111111122223666778888765556667999999997654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05902 Ig_Neurocan Immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan

Probab=98.58  E-value=1e-06  Score=60.70  Aligned_cols=87  Identities=18%  Similarity=0.221  Sum_probs=53.9

Q ss_pred             cCCcEEEEEEecCC-------CceEEEEEEcC----ceeEE-E--eeee---eeecCcCEEEEeCC--ceeEEEEEeeec
Q psy15734         35 VGKEALMACVVENL-------REYKVAWVKMI----TQTIL-S--IHHK---VVTQNKRVSITFND--HRSWFLHLRDVQ   95 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-------~~~~v~W~~~~----~~~~~-~--~~~~---~~~~~~~~~~~~~~--~~~~~L~i~~~~   95 (314)
                      .|++++|+|.+.-.       ..+.+.|.+..    ..... .  ....   .....+|+.+..+.  ....+|.|.+++
T Consensus         1 ~~~~v~LpC~~~~~p~~~~~~~~~~I~W~k~~~~~~~~~~~v~v~~~~~~~~~~~y~gRvsl~~~~~~~~~asL~i~nv~   80 (110)
T cd05902           1 LSSSVLLPCVFTLPPSASSPPEGPRIKWTKLRPASGQKQRPVLVARDNVVRVAKAFQGRVSLPGYPKNRYNASLVLSRLR   80 (110)
T ss_pred             CCCcEEEeeEEEcCccccCCCCCCEEEEEEeCCCCCceEEEEEECCCCcEEEchhcccEEEeecCCCCCceEEEEECCCC
Confidence            37899999996421       24799999862    11111 1  1111   11224567766533  235589999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .+|+|.|.|.+... ......+.|.|.
T Consensus        81 ~~D~G~Y~C~v~~g~~~~~~~v~L~V~  107 (110)
T cd05902          81 YSDSGTYRCEVVLGINDEQDTVPLEVT  107 (110)
T ss_pred             HHHCEEEEEEEEECCcccEEEEEEEEE
Confidence            99999999999653 234455556654

Ig_Neurocan: immunoglobulin (Ig)-like domain of the chondroitin sulfate proteoglycan core protein (CSPG), neurocan. In CSPGs, the Ig-like domain is followed by hyaluronan (HA)-binding tandem repeats, and a C-terminal region with epidermal growth factor-like, lectin-like, and complement regulatory protein-like domains. Separating these N- and C-terminal regions is a nonhomologous glycosaminoglycan attachment region. In cartilage, the CSPG aggrecan (not included in this group) forms cartilage link protein stabilized aggregates with HA. These aggregates contribute to the tissue's load bearing properties. Unlike aggrecan which is widely distributed in connective tissue and extracellular matrices, neurocan is localized almost exclusively in nervous tissue. Aggregates having other CSPGs substituting for aggrecan may contribute to the structural integrity of many differen

>cd05885 Ig2_Necl-4 Second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4))

Probab=98.57  E-value=8.5e-07  Score=56.98  Aligned_cols=64  Identities=14%  Similarity=0.240  Sum_probs=42.8

Q ss_pred             cEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         38 EALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+.|.|...+ .|++.+.||+++ ..+..... ....+..+..      .+.|.|...+..|.+.|+|.+.|.
T Consensus         1 ~~~L~C~s~~skP~a~i~W~k~~-~~l~~~~~-~~~~~~~~t~------~s~L~~~~~~~Ddg~~~~C~A~n~   65 (80)
T cd05885           1 EVELTCLSPRSKPAATLRWYRDR-KELKGVIS-QQENGKTVSV------SNTIRFPVDRKDDGAILSCEASHP   65 (80)
T ss_pred             CEEEEEeCCCccCCCeEEEEECC-EECCCCcc-cccCCceEEE------EEEEEEEeeeccCCcEEEEEEECh
Confidence            3789999954 688999999954 44422110 0111112222      237999999999999999999775

Ig2_Necl-4: second immunoglobulin (Ig)-like domain of nectin-like molecule-4 (Necl-4, also known as cell adhesion molecule 4 (CADM4)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1-Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Ig domains are likely to participate in ligand binding and recognition. Necl-4 is expressed on Schwann cells, and plays a key part in initiating peripheral nervous system (PNS) myelination. In injured peripheral nerve cells, the mRNA signal for both Necl-4 and Necl-5 was observed to be elevated. Necl-4 participates in cell-cell adhesion and is proposed to play a role in tumor suppression.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=98.57  E-value=2.2e-07  Score=59.65  Aligned_cols=73  Identities=18%  Similarity=0.370  Sum_probs=47.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      |.+...+.......+. +.|.|.+.+.+ .+.+.|+. ......      ......      ......|.|.++..+|.|
T Consensus         2 P~I~~~~~~~~~~~~~-~~l~C~~~~~~~~~~~~W~~-~~~~~~------~~~~~~------~~~~~~L~i~~v~~~~~g   67 (75)
T PF13927_consen    2 PQISVPPPPVVTSGGS-VTLTCSAEGGPPPPSISWYD-SNPSFN------SNSRGS------SSSNSTLTISNVTRSDNG   67 (75)
T ss_dssp             SEEEEESTSEEETTEE-EEEEEEESSEESSEEEEEET-EEEEEE------EEEEEE------EEEEEEEEESSCCGGGTE
T ss_pred             CEEEEcCCCcEeecee-EEEEEEEccccCCeEEEEEe-cCCcee------eeeeec------cceeeEEEEccCCHHhCc
Confidence            6666666555444444 99999998866 88999991 111000      000000      011237999999999999


Q ss_pred             EEEEEEec
Q psy15734        101 WYMCQINT  108 (314)
Q Consensus       101 ~Y~C~~~~  108 (314)
                      .|+|.+.|
T Consensus        68 ~y~C~a~N   75 (75)
T PF13927_consen   68 TYTCIASN   75 (75)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEC
Confidence            99999864

...

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.56  E-value=6.6e-07  Score=61.90  Aligned_cols=77  Identities=16%  Similarity=0.374  Sum_probs=50.1

Q ss_pred             eEEEcCCcEEEEEEecCC-CceEEEEEEcCce----eEE---Eee-e--eee---ecCcCEEEEe-CCceeEEEEEeeec
Q psy15734         31 VTATVGKEALMACVVENL-REYKVAWVKMITQ----TIL---SIH-H--KVV---TQNKRVSITF-NDHRSWFLHLRDVQ   95 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~----~~~---~~~-~--~~~---~~~~~~~~~~-~~~~~~~L~i~~~~   95 (314)
                      +.+.+|++++|.|.+... ....+.|||....    .+.   ... .  ...   ....++.+.. .....+.|.|.+++
T Consensus         1 ~~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   80 (107)
T cd07700           1 ILVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSDSSRYRLHINRVK   80 (107)
T ss_pred             CEEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECCCCEEEEEECCCC
Confidence            358899999999998653 4458999997532    111   100 0  000   1134555432 23345689999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      ++|+|.|.|...
T Consensus        81 ~~Dsg~YyCa~~   92 (107)
T cd07700          81 PEDSGTYFCMTV   92 (107)
T ss_pred             HHHCEEEEEeEc
Confidence            999999999974

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.55  E-value=9.4e-07  Score=56.84  Aligned_cols=75  Identities=12%  Similarity=0.131  Sum_probs=52.8

Q ss_pred             ceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        185 EGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..+..|++++|+|.....+.  +.+.|...+++.....      .....     +|.+.+++..|+|.++|.+.......
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~~------~~~~k-----tL~~~qv~~qdSG~WtC~V~~~~k~~   77 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQIL------NQDKK-----TLNLVQLGPNDSGTWDCIVSVNSSEK   77 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCccceec------cCCcc-----EEEeceeCcccCCEEEEEEEECceEE
Confidence            45788999999999966444  5999998755433111      01222     99999999999999999998664444


Q ss_pred             eeEEEEEE
Q psy15734        263 DGFIKVYV  270 (314)
Q Consensus       263 ~~~~~l~V  270 (314)
                      ...+.+.|
T Consensus        78 ~~~~~V~V   85 (88)
T cd07694          78 TLKLDIKV   85 (88)
T ss_pred             EEEeeEEE
Confidence            44554444

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05759 Ig2_KIRREL3-like Second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2)

Probab=98.55  E-value=1.1e-06  Score=57.52  Aligned_cols=66  Identities=8%  Similarity=0.154  Sum_probs=40.6

Q ss_pred             cEEEEEEecC-CCceEEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         38 EALMACVVEN-LREYKVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+.|.|.+.+ .|.+.+.|+++ +..+..... .....++....     ....|.|......|.|.|+|.+.+.
T Consensus         1 ~~~L~C~v~g~~P~~~v~W~~~-g~~l~~~~~~~~~~~~~~~~~-----~~s~L~i~~~~~~~~~~y~C~a~n~   68 (82)
T cd05759           1 PYNLTCRARGAKPAAEIIWFRD-GEVLDGATYSKELLKDGKRET-----TVSTLPITPSDHDTGRTFTCRARNE   68 (82)
T ss_pred             CEEEEEEEeCccCCCEEEEEEC-CEEccCceeeeeEecCCCeEE-----EEEEEEEeCceecCCCEEEEEEcCc
Confidence            3689999987 57789999994 443321110 00111111110     1126888888888899999999764

Ig2_KIRREL3-like: domain similar to the second immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd04984 IgV_L_lambda Immunoglobulin (Ig) lambda light chain variable (V) domain

Probab=98.52  E-value=3.8e-07  Score=62.08  Aligned_cols=69  Identities=19%  Similarity=0.334  Sum_probs=47.1

Q ss_pred             eeecCccEEEEEEEeec--CCceeEEecCCCe----eeec---------CCceeeeEeeCCeeeEEEEEEeecCCCCCeE
Q psy15734        186 GAFVSQTVELHCHTEAF--PASLNYWTNEKGD----MIIT---------GDDYEDSRLINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~~----~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                      .+.+|++++|.|...+.  ....+.|++....    .+..         ..++...  .+.  ....|.|.+++.+|+|.
T Consensus         2 ~v~~G~~v~l~C~~~~~~~~~~~i~Wy~q~~g~~~~~l~~~~~~~~~~~~~rf~~~--~~~--~~~~L~I~~~~~~Dsg~   77 (98)
T cd04984           2 SVSPGETVTITCTGSSGNISGNYVNWYQQKPGSAPRYLIYEDSDRPSGIPDRFSGS--KSG--NTASLTISGAQTEDEAD   77 (98)
T ss_pred             ccCCCCCEEEEEEEcCCCcCCCCEEEEEECCCCCccEEEEeccccCCCCCCCEEEE--ccC--CEEEEEECCCChhhCEE
Confidence            47899999999999775  5677999875431    1110         1122211  111  34589999999999999


Q ss_pred             EEEEEeeC
Q psy15734        251 YRCVAVNA  258 (314)
Q Consensus       251 Y~C~a~n~  258 (314)
                      |.|.+.+.
T Consensus        78 Y~C~~~~~   85 (98)
T cd04984          78 YYCQVWDS   85 (98)
T ss_pred             EEEEEccC
Confidence            99998753

IgV_L_lambda: Immunoglobulin (Ig) light chain, lambda type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.52  E-value=1.1e-06  Score=61.82  Aligned_cols=81  Identities=20%  Similarity=0.362  Sum_probs=54.0

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEeee---ee---eecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIHH---KV---VTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~~---~~---~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .|....+.+|++++|.|.....  ....+.|||... ..   +.....   ..   ....+|+.+..+. .....|.|.+
T Consensus         3 ~~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (117)
T cd04981           3 ESGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITRDTSKSTVYLQLNS   82 (117)
T ss_pred             cCCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEEEccCCEEEEEECC
Confidence            4567789999999999998543  246799999642 11   111110   00   0113466666543 2345799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|+|.|.|.+.
T Consensus        83 ~~~~Dsa~YyCa~~   96 (117)
T cd04981          83 LTPEDTAVYYCARG   96 (117)
T ss_pred             CCHHHCEEEEEEEE
Confidence            99999999999985

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>smart00406 IGv Immunoglobulin V-Type

Probab=98.51  E-value=6.9e-07  Score=58.37  Aligned_cols=69  Identities=20%  Similarity=0.397  Sum_probs=45.4

Q ss_pred             cEEEEEEecCCCc--eEEEEEEcCc-e---eEEEee--eeee---ecCcCEEEEeCC-ceeEEEEEeeecCCCCeEEEEE
Q psy15734         38 EALMACVVENLRE--YKVAWVKMIT-Q---TILSIH--HKVV---TQNKRVSITFND-HRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        38 ~~~l~C~~~~~~~--~~v~W~~~~~-~---~~~~~~--~~~~---~~~~~~~~~~~~-~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      +++|+|.+.....  ..+.|++... .   .+....  ....   ....|+.+.... ...++|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            4789999866443  4899999642 1   111111  1111   224577766553 5567899999999999999996


Q ss_pred             E
Q psy15734        106 I  106 (314)
Q Consensus       106 ~  106 (314)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            4

>cd07706 IgV_TCR_delta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) delta chain

Probab=98.51  E-value=5.5e-07  Score=63.38  Aligned_cols=78  Identities=17%  Similarity=0.247  Sum_probs=52.2

Q ss_pred             EcCCCcceeecCccEEEEEEEeec-CCceeEEecCCCe---e-eec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKGD---M-IIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~---~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      .+.+....+..|++++|.|..... ....+.|++....   . +..         ..++.+..  +......+|.|.+++
T Consensus         3 ~q~~~~v~~~~G~~v~L~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~~~~~~~~~~~~R~~~~~--~~~~~~~sL~I~~~~   80 (116)
T cd07706           3 TQAQPDVSVQVGEEVTLNCRYETSWTNYYIFWYKQLPSGEMTFLIRQKSIYGNATKGRYSVNF--QKAQKSISLTISALQ   80 (116)
T ss_pred             EEeCCceEEcCCCCEEEEEEEeCCCCceEEEEEEECCCCceEEEEEecCccCCccCCeEEEEE--eccCCEEEEEECCCC
Confidence            455667789999999999998764 4567889984321   1 111         11222211  111124589999999


Q ss_pred             CCCCeEEEEEEeeC
Q psy15734        245 SHQFGSYRCVAVNA  258 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~  258 (314)
                      .+|+|.|.|.+...
T Consensus        81 ~~Dsg~Y~C~~~~~   94 (116)
T cd07706          81 LEDSAKYFCALSTL   94 (116)
T ss_pred             HHHCEEEEEEEECC
Confidence            99999999999853

IgV_TCR_delta: immunoglobulin (Ig) variable (V) domain of the delta chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.51  E-value=1e-06  Score=59.26  Aligned_cols=74  Identities=14%  Similarity=0.088  Sum_probs=48.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.+..++ ...|.+|++|+|.|.... ....+.|+|++...-...  .......+        ....+.|.+++.+|+|.
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~--~~~~~~~~--------~~a~f~I~~~~~~~~G~   69 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH--LYEKHHGG--------FQASFPLGPVTPAHAGT   69 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee--cccccCCe--------EEEEEEecCCCcccCEE
Confidence            5554544 445889999999998865 456899999654311000  00000011        12268999999999999


Q ss_pred             EEEEEe
Q psy15734        102 YMCQIN  107 (314)
Q Consensus       102 Y~C~~~  107 (314)
                      |+|...
T Consensus        70 Y~C~~~   75 (94)
T cd05711          70 YRCYGS   75 (94)
T ss_pred             EEEEEE
Confidence            999974

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05846 Ig1_MRC-OX-2_like First immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200) and similar proteins

Probab=98.50  E-value=1.6e-06  Score=58.76  Aligned_cols=35  Identities=20%  Similarity=0.412  Sum_probs=29.9

Q ss_pred             EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKVYV  270 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l~V  270 (314)
                      ++|.|.+++.+|+|.|.|.+.. +.|.....+.|+|
T Consensus        61 ~sL~I~nv~~~D~G~Y~C~~~~~p~g~~~~~~~L~v   96 (97)
T cd05846          61 TSITIWNVTLEDEGCYKCIFNTFPDGSKSGTMCLTV   96 (97)
T ss_pred             cEEEEeCCceeeeEEEEEEEEeCCCCCeeeEEEEEE
Confidence            4899999999999999999874 6677777777776

Ig1_ MRC-OX-2_like: domain similar to the first immunoglobulin (Ig) domain of rat MRC OX-2 antigen (also known as CD200). MRC OX-2 is a membrane glycoprotein expressed in a variety of lymphoid and non-lymphoid cells in rats. It has a similar broad distribution pattern in humans. MRC OX-2 may regulate myeloid cell activity. The protein has an extracellular portion containing two Ig-like domains, a transmembrane portion, and a cytoplasmic portion.

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.50  E-value=1.4e-06  Score=58.58  Aligned_cols=81  Identities=11%  Similarity=0.112  Sum_probs=51.3

Q ss_pred             EEcCCCcceeecCccEEEEEEEee-cCCce--eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEA-FPASL--NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~--~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +.+.+....+.+|+.++|+|.+.| .|.+.  +.|++++.. +. ...+.. .........++|.+..-..+|.-.|+|+
T Consensus         4 V~l~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~~~-l~-~~~~~~-~~~~~~~~~stlt~~~~r~D~g~~~sC~   80 (100)
T cd05755           4 VELSPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGNET-LS-RQPFGD-NTKSPVNAPATITITVDREDHGANFSCE   80 (100)
T ss_pred             EEEecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCCEE-cc-cceecc-ccCCCceeEEEEEEecchhhCCcEEEEE
Confidence            444555566789999999999976 67776  689996433 32 222111 0111234456788765544444499999


Q ss_pred             EeeCCCC
Q psy15734        255 AVNALGE  261 (314)
Q Consensus       255 a~n~~g~  261 (314)
                      |.+..+.
T Consensus        81 A~l~l~~   87 (100)
T cd05755          81 TELDLRP   87 (100)
T ss_pred             EEeccCc
Confidence            9987654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd05716 Ig_pIgR Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR)

Probab=98.50  E-value=1e-06  Score=59.95  Aligned_cols=73  Identities=14%  Similarity=0.141  Sum_probs=49.0

Q ss_pred             ceeecCccEEEEEEEee-cCCceeEEecCCCee---ee-c--------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        185 EGAFVSQTVELHCHTEA-FPASLNYWTNEKGDM---II-T--------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~---~~-~--------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +.+.+|++++|.|.... .+...+.|++.....   .+ .        ..++.+  ..+.......|.|.+++.+|+|.|
T Consensus         2 v~~~~G~~vtl~C~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~r~~~--~~~~~~~~~~L~I~~v~~~DsG~Y   79 (98)
T cd05716           2 VTGELGGSVTIPCPYPPKNRSYEKYWCKWGSAGCCLIIVSEGSVQSQYEGRVSL--TDDPDNGVFTVTLNQLRKEDAGWY   79 (98)
T ss_pred             EEEEeCCeEEEEeeCCCCCCCcEeEeECCCCCCCCeEEECCCccccccCCCEEE--EecCCCCEEEEEEcCCCHHHCEEE
Confidence            35789999999999875 356678899864321   11 0        112222  111122346899999999999999


Q ss_pred             EEEEeeCC
Q psy15734        252 RCVAVNAL  259 (314)
Q Consensus       252 ~C~a~n~~  259 (314)
                      .|.+....
T Consensus        80 ~C~~~~~~   87 (98)
T cd05716          80 WCGVGDDG   87 (98)
T ss_pred             EEEcccCC
Confidence            99987754

Ig_pIgR: Immunoglobulin (Ig)-like domain in the polymeric Ig receptor (pIgR). pIgR delivers dimeric IgA and pentameric IgM to mucosal secretions. Polymeric immunoglobulin (pIgs) are the first defense against pathogens and toxins. IgA and IgM can form polymers via an 18-residue extension at their c-termini referred to as the tailpiece. pIgR transports pIgs across mucosal epithelia into mucosal secretions. Human pIgR is a glycosylated type I transmembrane protein, comprised of a 620 residue extracellular region, a 23 residue transmembrane region, and a 103 residue cytoplasmic tail. The extracellular region contains five domains that share sequence similarity with Ig variable (v) regions.

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.49  E-value=1e-06  Score=59.26  Aligned_cols=83  Identities=14%  Similarity=0.196  Sum_probs=55.7

Q ss_pred             EcCCCcceeecCccEEEEEEEeec-CCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAF-PAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..+|....+..|+.++|.|.+.|+ -++  .+.|+++++..............++.|...+.|.+..-...+.-.|+|.+
T Consensus         3 ~~pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~~~w~~g~~ysC~V   82 (96)
T cd07696           3 LLPPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTSTLNVSTDDWISGDTFQCKV   82 (96)
T ss_pred             ecCcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEEEEEeCHHHccCCCcEEEEE
Confidence            346666778889999999999998 333  56899986543322211111222333777888888876655566899999


Q ss_pred             eeCCCC
Q psy15734        256 VNALGE  261 (314)
Q Consensus       256 ~n~~g~  261 (314)
                      ......
T Consensus        83 ~H~~l~   88 (96)
T cd07696          83 THPDLP   88 (96)
T ss_pred             ECCCCC
Confidence            887543

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.49  E-value=2.5e-06  Score=57.27  Aligned_cols=68  Identities=18%  Similarity=0.230  Sum_probs=43.8

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ++.++|.|.+.|+.++  .+.|++++................+ .|...+.|.|...   |.+.|+|.+.+...
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~s~l~v~~~---~~~~ytC~V~H~~~   84 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLWVTLEVPPE---DKARYSCRVEHSGL   84 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEEEEEEECCC---CCCEEEEEEEeCCC
Confidence            7889999999996444  7789997432221111111222233 3666777777654   77899999988654

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05887 Ig1_Nectin-3_like First immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and similar proteins

Probab=98.48  E-value=1.5e-06  Score=58.26  Aligned_cols=79  Identities=25%  Similarity=0.370  Sum_probs=50.9

Q ss_pred             ccEEEEEEEeecC-CceeEEecCCCe---eee-cC--------Cce--eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        191 QTVELHCHTEAFP-ASLNYWTNEKGD---MII-TG--------DDY--EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       191 ~~~~l~C~~~g~p-~p~~~W~~~~~~---~~~-~~--------~~~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      .+++|.|.....+ ...+.|.|..+.   .+. -.        ..+  ++... +.....++|.|.+++.+|+|.|+|++
T Consensus         1 ~~vtL~C~~~~~~~~~qV~W~k~~~~~~~~ia~y~~~~g~~~~~~y~~Rv~~~-~~~~~d~sl~i~nv~~~D~G~Y~C~v   79 (96)
T cd05887           1 KNVTLKCRIQVNETITQSSWEKIHGKGSVTLAVHHPMYGISIQPDYQGRVSFK-NYSLLDATIMLENVGFSDIGVYICKA   79 (96)
T ss_pred             CCEEEEEEecCCCcEEEEEEEEcCCCCcEEEEEEcccCCcccChhhCCcEEEc-CCCCCccEEEEeCCCccccEEEEEEE
Confidence            3689999987533 347789875321   111 00        011  11111 11122459999999999999999997


Q ss_pred             ee-CCCCceeEEEEEE
Q psy15734        256 VN-ALGETDGFIKVYV  270 (314)
Q Consensus       256 ~n-~~g~~~~~~~l~V  270 (314)
                      .+ +.|..+.+..|+|
T Consensus        80 ~tfP~G~~~~~~~l~~   95 (96)
T cd05887          80 VTFPLGNTQSSTTVTV   95 (96)
T ss_pred             EeCCCCCeeEEEEEEE
Confidence            54 7788888888877

Ig1_Nectin-3_like: domain similar to the first immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3). Nectin-3 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through -4). Nectins are synaptic cell adhesion molecules (CAMs) which participate in adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. For example, during spermatid development, the nectin-3,-2 trans-interaction is required for the formation of Sertoli cell-spermatid junctions in testis, and during morphogenesis of the ciliary body, the nectin-3,-1 trans-interaction is important for apex-apex adhesion between the pigment and non-pigment layers of the ciliary epithelia. Nectins also

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=98.48  E-value=6.6e-07  Score=58.47  Aligned_cols=68  Identities=18%  Similarity=0.164  Sum_probs=46.4

Q ss_pred             EEEEEEEee-cCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        193 VELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       193 ~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ++|.|.+.| +|...+.|++++. .+.......... .+..|...+.|.+......|...|+|+|.+..-.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng~-~l~~~~~~~~~~~~~~t~~~~s~L~~~~~~~d~g~~ytC~v~h~~l~   71 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKNDK-EIKDVKYLKEEDANRKTFTVSSTLDFRVDRSDDGVAIICRVDHESLN   71 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECCE-ECcCceeeEeeCCCCCEEEEEEEEEEEcccccCCCEEEEEEechhcC
Confidence            689999987 6778889999744 333222111112 2223777889999876677777999999987644

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=98.46  E-value=1e-06  Score=59.24  Aligned_cols=74  Identities=16%  Similarity=0.258  Sum_probs=48.5

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+ ...|..|++|+|.|.... +...+.|+|++.......   .......+  ....+.|.+++.+|+|.|.|..
T Consensus         2 P~l~a~p-~~vV~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~---~~~~~~~~--~~a~f~I~~~~~~~~G~Y~C~~   74 (94)
T cd05711           2 PFLSAHP-SPVVPSGENVTLQCHSDI-RFDRFILYKEGRSKPVLH---LYEKHHGG--FQASFPLGPVTPAHAGTYRCYG   74 (94)
T ss_pred             CEEEecC-CCccCCCCeEEEEEecCC-CCCEEEEEECCCCCCcee---cccccCCe--EEEEEEecCCCcccCEEEEEEE
Confidence            4444444 345789999999998865 556789999754321100   00000111  2348999999999999999997


Q ss_pred             e
Q psy15734        256 V  256 (314)
Q Consensus       256 ~  256 (314)
                      .
T Consensus        75 ~   75 (94)
T cd05711          75 S   75 (94)
T ss_pred             E
Confidence            5

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd05897 Ig2_IL1R2_like Second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2)

Probab=98.45  E-value=1.4e-06  Score=58.16  Aligned_cols=68  Identities=21%  Similarity=0.367  Sum_probs=45.7

Q ss_pred             eEEEcCCcEEEEEEe-c----CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         31 VTATVGKEALMACVV-E----NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~-~----~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ..+.+|.+..|.|.- .    ....+.+.|||++ ..+..       .+.++....+   ...|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~~~~~~~l~Cp~~~~f~~~~~~~~v~WYKd~-~~l~~-------~~~~~~~~~~---~~~L~I~~v~~~D~G~YtC~   73 (95)
T cd05897           5 QILFTSTSGKLVCPDLSDFTINRTDVELQWYKDS-VLLDK-------DNEKFYSLKG---STYLHIIDVSLNDSGYYTCK   73 (95)
T ss_pred             eEeccccCcEEECCCHHHcccCCCCCcEEEccCC-EECcC-------CCcceEecCC---CCEEEEEEcChhhCEEEEEE
Confidence            457789999999974 2    2356799999954 43211       1112222111   12699999999999999999


Q ss_pred             EecC
Q psy15734        106 INTV  109 (314)
Q Consensus       106 ~~~~  109 (314)
                      +.+.
T Consensus        74 ~~~~   77 (95)
T cd05897          74 LQFT   77 (95)
T ss_pred             EEEe
Confidence            9654

Ig2_IL1R2_like: domain similar to the second immunoglobulin (Ig)-like domain of interleukin-1 receptor-2 (IL1R2). IL-1 alpha and IL-1 beta are cytokines which participate in the regulation of inflammation, immune responses, and hematopoiesis. These cytokines bind to the IL-1 receptor type 1 (IL1R1), which is activated on additional association with an accessory protein, IL1RAP. IL-1 also binds the type II (IL1R2) represented in this group. Mature IL1R2 consists of three IG-like domains, a transmembrane domain, and a short cytoplasmic domain. It lacks the large cytoplasmic domain of Mature IL1R1, and does not initiate signal transduction. A naturally occurring cytokine IL-1RA (IL-1 receptor antagonist) is widely expressed and binds to IL-1 receptors, inhibiting the binding of IL-1 alpha and IL-1 beta.

>cd07700 IgV_CD8_beta Immunoglobulin (Ig) like domain of CD8 beta chain

Probab=98.40  E-value=1.5e-06  Score=60.19  Aligned_cols=70  Identities=19%  Similarity=0.358  Sum_probs=45.7

Q ss_pred             eeecCccEEEEEEEeecC-CceeEEecCCCe---e-----e-ec------------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        186 GAFVSQTVELHCHTEAFP-ASLNYWTNEKGD---M-----I-IT------------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~---~-----~-~~------------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+.+|++++|.|.+.+.. ...+.|++....   .     + ..            ..++......+  .....|+|.++
T Consensus         2 ~v~~G~~vtL~C~~~~~~~~~~~~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~I~~~   79 (107)
T cd07700           2 LVQTNNTVKLSCEAKGISENTRIYWLRWRQAPKDSHFEFLALWSPLGGATYGEEVSQEKFSIRVTSD--SSRYRLHINRV   79 (107)
T ss_pred             EEcCCCCEEEEEEEecCCCCCeEEEEEECCCCCCCccEEEEEEcCCCCeEEccccccCcEEEEEECC--CCEEEEEECCC
Confidence            478999999999997643 457899985432   0     0 00            11221111111  12357999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|...+
T Consensus        80 ~~~Dsg~YyCa~~~   93 (107)
T cd07700          80 KPEDSGTYFCMTVG   93 (107)
T ss_pred             CHHHCEEEEEeEcC
Confidence            99999999999853

IgV_CD8_beta: immunoglobulin (Ig)-like domain in CD8 beta. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alpha/alpha or alpha/beta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a V-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain.

>PHA02987 Ig domain OX-2-like protein; Provisional

Probab=98.38  E-value=4.7e-06  Score=61.64  Aligned_cols=90  Identities=16%  Similarity=0.195  Sum_probs=59.9

Q ss_pred             CcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecC-Cce--------eeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        183 QLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITG-DDY--------EDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~-~~~--------~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      ..+.|.+|+++.|.|.-. +...+.+.|+|.++....-. ...        ++..... ....+.|+|.+++.+|+|.|.
T Consensus        23 ~~v~V~ege~VtLsCs~t~s~~~~qVtWkK~~~~IatY~~~g~~i~~~Fk~Rve~mS~-s~~~StItIknVt~sDeGcY~  101 (189)
T PHA02987         23 VKITVSEHVNVKISCNKTSSFNSILITWKKNNKTIAGYGPCGPVIVDKFKNKIEYLSK-SFNESTILIKNVSLKDNGCYT  101 (189)
T ss_pred             EEEEEcCCCCEEEEEecCCCCccceEEEEEcCCCEEEEecCCcEEChhhcCeEEEecc-CCCcceEEEEeCChhhCeEEE
Confidence            345789999999999984 66678899999643222110 000        1110000 012469999999999999999


Q ss_pred             EEEee-CCC-CceeEEEEEEEec
Q psy15734        253 CVAVN-ALG-ETDGFIKVYVNLV  273 (314)
Q Consensus       253 C~a~n-~~g-~~~~~~~l~V~~~  273 (314)
                      |...- +.| ..+...-|.|...
T Consensus       102 C~F~tfp~G~~~~gt~CLtVt~~  124 (189)
T PHA02987        102 CIFNTLLSKNNEKGVVCLNVTTD  124 (189)
T ss_pred             EEEEecCCCCCceeEEEEEEEch
Confidence            99876 445 6677788888654

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=98.36  E-value=0.00096  Score=55.09  Aligned_cols=124  Identities=16%  Similarity=0.060  Sum_probs=75.5

Q ss_pred             CcceeecCccEEEEEEEee---cCCceeEEecCCCee---e-------------ecCCceeeeEeeC--CeeeEEEEEEe
Q psy15734        183 QLEGAFVSQTVELHCHTEA---FPASLNYWTNEKGDM---I-------------ITGDDYEDSRLIN--GYSCHMTLKIR  241 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g---~p~p~~~W~~~~~~~---~-------------~~~~~~~~~~~~~--~~~~~s~L~i~  241 (314)
                      ..+.+..|..+.|.|..+.   ..-....|...+=+.   .             .....+.++...+  .....|+|+|.
T Consensus       272 ~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLTIk  351 (500)
T PHA02914        272 DEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLTIK  351 (500)
T ss_pred             ceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEEee
Confidence            4456778999999998865   334566787543110   0             0112233332211  12246799999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccc-cccEeEEEEEeec-c-CCCccceEEEE
Q psy15734        242 SILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSR-LHMGAYLCIASNG-V-VPSVSHRIMVT  310 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~-~~~g~~~C~a~~~-~-~~~~~w~v~l~  310 (314)
                      +++.+..|-|+|+|....-...+.--|.|...    +....... .-.....|.+-.. . +++|.|++--.
T Consensus       352 ka~I~N~GCY~~~a~~g~~~~ec~~Cl~V~d~----V~f~W~~e~~n~T~V~Cyv~sy~~kp~si~wkvnGV  419 (500)
T PHA02914        352 KAHINNAGCYEAQAFMGKFKEECRHCFKVADH----VFFKWNTEGDNETKVACYAAQYDMQPFSILWKSNGV  419 (500)
T ss_pred             eEEEEcCCceEEEEecCcchhhhhhheEeccE----EEEEEEeccCceEEEEEEEEecccCCceeEEEEccE
Confidence            99999999999999887655555555555422    33333333 2334589998776 4 45789987543

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=98.35  E-value=2.6e-06  Score=57.96  Aligned_cols=79  Identities=18%  Similarity=0.187  Sum_probs=52.6

Q ss_pred             CCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCc-eeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDD-YEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ++.......++.++|.|.+.|..+  ..+.|++++... ..... ...... ++.|...+.|.+..-...+...|+|++.
T Consensus         8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g~~~-~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~~sC~V~   86 (100)
T cd07699           8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDGATV-SSGVQTSTTEQQSDNTYSLSSYLTLTKSDWNKHKVYTCEVT   86 (100)
T ss_pred             CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECCEEC-cccEeccccEECCCCCEEEEEEEEEcHHHhCCCCeEEEEEE
Confidence            445555667788999999999543  477899975433 22111 111222 3338888899888777767789999998


Q ss_pred             eCCC
Q psy15734        257 NALG  260 (314)
Q Consensus       257 n~~g  260 (314)
                      ...-
T Consensus        87 H~~l   90 (100)
T cd07699          87 HEGL   90 (100)
T ss_pred             ecCC
Confidence            8653

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=98.34  E-value=3.5e-06  Score=56.40  Aligned_cols=82  Identities=11%  Similarity=0.090  Sum_probs=51.6

Q ss_pred             CCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCce-eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDY-EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ++.......+..+.|.|.+.|+-+  ..+.|++++.......... .....++.|...+.|.|..-...+...|+|.+.+
T Consensus         5 ~ps~~~~~~~~~~~L~C~a~gFyP~~I~vtW~~dg~~~~~~~~~s~~~~~~~~Ty~~~S~L~v~~~~w~~~~~ytC~V~H   84 (94)
T cd05847           5 HSSCCDTGTSETIQLLCLISGYTPGTIEVEWLVDGQVATLVAASTAPQKEEGSTFSTTSELNVTQEDWKSGKTYTCKVTH   84 (94)
T ss_pred             CcChHHcCCCCCEEEEEEEEeEECCCCEEEEEECCEECcCceeecccEECCCCcEEEEEEEEEchHHhcCCCeEEEEEEE
Confidence            333343345667999999999544  4668999744321111111 1112233477888898887666677899999998


Q ss_pred             CCCCc
Q psy15734        258 ALGET  262 (314)
Q Consensus       258 ~~g~~  262 (314)
                      .....
T Consensus        85 ~~~~~   89 (94)
T cd05847          85 QGTTF   89 (94)
T ss_pred             CCeee
Confidence            76543

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>smart00407 IGc1 Immunoglobulin C-Type

Probab=98.33  E-value=4.1e-06  Score=53.71  Aligned_cols=66  Identities=15%  Similarity=0.256  Sum_probs=44.4

Q ss_pred             EEEEEEEeec-CC-ceeEEecCCCeeeecCCc-eeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        193 VELHCHTEAF-PA-SLNYWTNEKGDMIITGDD-YEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       193 ~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ++|.|.+.|+ |+ ..+.|++++ ..+..... .......+ .|...+.|.|......+...|+|+|.+..
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g-~~~~~~~~~~~~~~~~~gt~~~~s~L~v~~~~~~~~~~~tC~V~H~~   71 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNG-QEVTSGVSTTDPLKNSDGTYFLSSYLTVSASTWESGDTYTCQVTHEG   71 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECC-EECCCCEEECceEECCCCCEEEEEEEEEccccCCCCCEEEEEEEEcC
Confidence            6899999996 44 478999974 33222111 11122233 48888899988777777789999998764

>cd00096 Ig Immunoglobulin domain

Probab=98.27  E-value=4.4e-06  Score=52.50  Aligned_cols=66  Identities=23%  Similarity=0.277  Sum_probs=45.6

Q ss_pred             EEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       193 ~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +.|.|.+.+.+...+.|++++......... ........+.....|.|.++..+|.|.|.|.+.+..
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~i~~~~~~d~g~y~C~~~~~~   66 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLT-RVRSSRGTSSGSSTLTISNVTLEDSGTYTCVASNSA   66 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccE-EeccccCcceeEEEEEECccCcccCcEEEEEEecCc
Confidence            468999999888899999964332211110 111122224455689999999999999999998876

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05883 Ig2_Necl-2 Second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=98.25  E-value=3e-05  Score=50.06  Aligned_cols=77  Identities=17%  Similarity=0.223  Sum_probs=43.8

Q ss_pred             cEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC--Ccce
Q psy15734         38 EALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP--MTSQ  114 (314)
Q Consensus        38 ~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~--~~~~  114 (314)
                      .+.|.|.+.+ .|...|.||+++ ..+.............+..      ..+|.|..-...|...|+|.+.+..  ....
T Consensus         1 ~~~L~C~s~gSkP~A~I~W~k~~-~~l~~~~~~~~~~~~~~t~------~S~L~~~p~~eDdG~~~~C~a~~~~l~~~~~   73 (82)
T cd05883           1 EIELNCTAMASKPAATIRWFKGN-KELTGKSTVEETWSRMFTV------TSQLMLKVTKEDDGVPVICLVDHPAVKDLQT   73 (82)
T ss_pred             CEEEEEEecCCCCCCEEEEEECC-EECcCcccceeccCCCcEE------EEEEEEECchhhCCCEEEEEEcCcccCCcee
Confidence            3689999976 588999999954 4332211000011111222      1268887666666668999997642  2233


Q ss_pred             eEEEEEE
Q psy15734        115 KGYLQVV  121 (314)
Q Consensus       115 ~~~l~v~  121 (314)
                      ...|.|.
T Consensus        74 ~~~L~V~   80 (82)
T cd05883          74 QRYLEVQ   80 (82)
T ss_pred             eEEEEEE
Confidence            3445543

Ig2_Necl-2: second immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1)). Nectin-like molecules (Necls) have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is expressed in a wide variety of tissues, and is a putative tumour suppressor gene, which is downregulated in aggressive neuroblastoma. Ig domains are likely to participate in ligand binding and recognition.

>cd05712 Ig_Siglec_N Immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins)

Probab=98.22  E-value=1e-05  Score=57.15  Aligned_cols=78  Identities=10%  Similarity=-0.018  Sum_probs=49.1

Q ss_pred             CCCcceeecCccEEEEEEEeecC------CceeEEecCCCee-----ee-cC------Cce--eeeEeeCCeeeEEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFP------ASLNYWTNEKGDM-----II-TG------DDY--EDSRLINGYSCHMTLKI  240 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p------~p~~~W~~~~~~~-----~~-~~------~~~--~~~~~~~~~~~~s~L~i  240 (314)
                      .|....+.+|++++|.|.....+      ...+.|++.....     .. ..      ..+  +.....+.......|.|
T Consensus         5 ~P~~v~~~~G~~VtL~C~f~~~~~~~~~~~~~~~Wykq~~g~~~~~~~~~~~~~~~~~~~f~gR~~~~~~~~~~~~sL~I   84 (119)
T cd05712           5 MPKSVSVQEGLCVLIPCSFSYPADWPVSNGVHGIWYKGHPYPKNRPPVATNNRSRLVHESTRGRFRLLGDLGKKNCSLLI   84 (119)
T ss_pred             CCCEEEEeccccEEEEEEeeCcccccCCCceEEEEEeCCCCCCCCCcEEEcCCCccccccccccEEEecCCCCCEEEEEE
Confidence            34556889999999999875332      2457899864321     11 00      011  11111111223568999


Q ss_pred             eecCCCCCeEEEEEEeeC
Q psy15734        241 RSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+++.+|+|.|.|.+...
T Consensus        85 ~~l~~~Dsg~Y~C~~~~~  102 (119)
T cd05712          85 SDAQPEDSGKYFFRVELG  102 (119)
T ss_pred             ccCChhhCeEEEEEEEcC
Confidence            999999999999988664

Ig_Siglec_N: immunoglobulin (Ig) domain at the N terminus of Siglec (sialic acid-binding Ig-like lectins). Siglec refers to a structurally related protein family that specifically recognizes sialic acid in oligosaccharide chains of glycoproteins and glycolipids. Siglecs are type I transmembrane proteins, organized as an extracellular module composed of Ig-like domains (an N-terminal variable set of Ig-like carbohydrate recognition domains, and 1 to 16 constant Ig-like domains), followed by transmembrane and short cytoplasmic domains. Human siglecs are classified into two subgroups, one subgroup is comprised of sialoadhesin (Siglec-1), CD22 (Siglec-2), and MAG, the other subgroup is comprised of CD33-related Siglecs which include CD33 (Siglec-3) and human Siglecs 5-11.

>cd05889 Ig1_DNAM-1_like First immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226) and similar proteins

Probab=98.22  E-value=2.4e-05  Score=52.50  Aligned_cols=33  Identities=27%  Similarity=0.478  Sum_probs=27.7

Q ss_pred             EEEEEeecCCCCCeEEEEEEee-CCCCceeEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN-ALGETDGFIKV  268 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n-~~g~~~~~~~l  268 (314)
                      .+|.|.+++.+|+|.|+|.+.. +.|..++.+.|
T Consensus        60 ~sI~i~nvt~~D~G~Y~C~~~t~P~g~~~~~i~~   93 (96)
T cd05889          60 MSLSFNNATEEDVGLYCCSLVTYPQGSWEKVIEV   93 (96)
T ss_pred             cEEEEcCCCcccCEEEEEEEEeCCCCCeEEEEEE
Confidence            3999999999999999999977 46766777655

Ig1_DNAM-1_like: domain similar to the first immunoglobulin (Ig) domain of DNAX accessory molecule 1 (DNAM-1, also known as CD226). DNAM-1 is a transmembrane protein having two Ig-like domains. It is an adhesion molecule which plays a part in tumor-directed cytotoxicity and adhesion in natural killer (NK) cells and T lymphocytes. It has been shown to regulate the NK cell killing of several tumor types, including myeloma cells and ovarian carcinoma cells. DNAM-1 interacts specifically with poliovirus receptor (PVR; CD155) and nectin -2 (CD211), other members of the Ig superfamily. DNAM-1 is expressed in most peripheral T cells, NK cells, monocytes and a subset of B lymphocytes.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=98.20  E-value=2.6e-05  Score=53.94  Aligned_cols=73  Identities=12%  Similarity=0.200  Sum_probs=47.3

Q ss_pred             eeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeE-eeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        186 GAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSR-LIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~-~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ....|+.++|.|.+.|+-+  ..+.|++++.. +..... .... .++ .|...+.|.+..-..++.-.|+|.+.+...
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng~~-~~~~~~-~~~p~~d~~ty~~~S~L~~~~~~~d~~~~ytC~V~H~~l   93 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNGNE-LSAEQP-NITPEGDSVSYNVTSTVQVKLTEDDVHSQVTCEVQHRTL   93 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECCEE-Cccccc-ceeeCCCCCcEEEEEEEEEECccccccCceEEEEEeCCC
Confidence            3457888999999998544  47799997444 332211 2221 222 477788888886444443469999998653

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>cd05720 Ig_CD8_alpha Immunoglobulin (Ig) like domain of CD8 alpha chain

Probab=98.19  E-value=1.2e-05  Score=55.29  Aligned_cols=23  Identities=17%  Similarity=0.429  Sum_probs=20.3

Q ss_pred             EEEEEEeecCCCCCeEEEEEEee
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...|.|.+++.+|+|.|.|.+.+
T Consensus        68 ~~~L~I~~~~~sDsgtY~Ca~~~   90 (104)
T cd05720          68 SFVLTLKNFQKENEGYYFCSVAS   90 (104)
T ss_pred             EEEEEECCCCHHHCEEEEEEEcc
Confidence            34899999999999999998764

Ig_CD8_alpha: immunoglobulin (Ig)-like domain in CD8 alpha. The CD8 glycoprotein plays an essential role in the control of T-cell selection, maturation and the T-cell receptor (TCR)-mediated response to peptide antigen. CD8 is comprised of alpha and beta subunits and is expressed as either an alphaalpha or alphabeta dimer. Both dimeric isoforms can serve as a coreceptor for T cell activation and differentiation, however they have distinct physiological roles, different cellular distributions, unique binding partners etc. Each CD8 subunit is comprised of an extracellular domain containing a v-type Ig-like domain, a single pass transmembrane portion and a short intracellular domain. The Ig domain of CD8 alpha binds to antibodies.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=98.16  E-value=8e-06  Score=55.68  Aligned_cols=80  Identities=15%  Similarity=0.186  Sum_probs=51.2

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceee--eEe---eCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYED--SRL---INGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~--~~~---~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      .++....+..|..++|.|.+.|+.++  .+.|++++.. .........  ...   ++.|...+.|.|..-...+...|+
T Consensus         6 ~~p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g~~-~~~~~~~~~~~~~~~~~dgTy~~~s~L~v~~~~w~~~~~yt   84 (102)
T cd05768           6 LPPPSEELSLQETATLTCLVKGFSPSDIFVKWLQNGQP-LSKQKYVTTAPMQEPGGNESYFLYSKLTVSAEDWNAGDVFT   84 (102)
T ss_pred             eCcChHHhCcCCceEEEEEEeeEeCCCCEEEEEECCEE-CCcccccccCcccccCCCCeEEEEEEEEEcHHHhcCCCcEE
Confidence            34444555668899999999996554  4589997543 222111111  111   233777888888665556667899


Q ss_pred             EEEeeCCC
Q psy15734        253 CVAVNALG  260 (314)
Q Consensus       253 C~a~n~~g  260 (314)
                      |.+.....
T Consensus        85 C~V~H~~l   92 (102)
T cd05768          85 CVVGHEAL   92 (102)
T ss_pred             EEeEeCCC
Confidence            99988653

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=98.15  E-value=2.9e-05  Score=52.07  Aligned_cols=73  Identities=11%  Similarity=0.136  Sum_probs=48.3

Q ss_pred             cCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734        189 VSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       189 ~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      ......+.|.+ .|.|.+.|.|+++....    .........++ +...++|.+......|.-.|+|++.|..-.....
T Consensus        14 ~~~~~va~C~s~~gkP~a~ItW~~~~~~~----~~~~~~~~~~g~~tv~S~l~~~p~~~d~G~~~tC~v~h~~l~~~~~   88 (95)
T cd05719          14 GEPVTVATCVSANGKPPATISWETTLGGE----AETQSKENPNGTVTVTSEYRLVPSREANGKELTCVVSHPTLQEPQR   88 (95)
T ss_pred             CCccEEEEEECCCCcCCCEEEEEeCCCCc----ceeEeecCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeE
Confidence            34568889998 68999999999861111    11111122333 6677888887666666669999999987544333

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=98.15  E-value=1.8e-05  Score=54.97  Aligned_cols=86  Identities=13%  Similarity=0.164  Sum_probs=55.7

Q ss_pred             CCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc-eeeeEee--CCeeeEEEEEEeecCCCC-CeEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD-YEDSRLI--NGYSCHMTLKIRSILSHQ-FGSYRCV  254 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-~~~~~~~--~~~~~~s~L~i~~~~~~d-~G~Y~C~  254 (314)
                      ++....+..+..++|.|.+.|+-+.  .+.|++++.. +..... .......  +.|...+.|.|......| ...|+|.
T Consensus         9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng~~-l~~g~~~~~~~~~~~~gTYs~~S~L~v~~~~w~~~~~~ytC~   87 (115)
T cd05769           9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNGKE-VTDGVATDPQALRENTSTYSISSRLRVSATEWFNPRNTFTCI   87 (115)
T ss_pred             CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECCEE-CCCCcccccceecCCCCeEEEEEEEEEChHHhccCCCeEEEE
Confidence            4444455567889999999995444  6789997443 322211 1112222  248888899998777655 5589999


Q ss_pred             EeeCCCCceeEEE
Q psy15734        255 AVNALGETDGFIK  267 (314)
Q Consensus       255 a~n~~g~~~~~~~  267 (314)
                      +............
T Consensus        88 V~H~g~~~~~~~~  100 (115)
T cd05769          88 VQFYGGTDTDKWQ  100 (115)
T ss_pred             EEEeCCccceeee
Confidence            9988766555443

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=98.14  E-value=4.6e-05  Score=50.97  Aligned_cols=68  Identities=12%  Similarity=0.145  Sum_probs=42.8

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCC-ceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGD-DYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..++..+|.|.+.|+-+.  .+.|.+++.. +.... ........++ |...+.|.+..   ++...|+|.+....
T Consensus        13 ~~~~~~tL~C~a~gFyP~~I~v~W~~~g~~-~~~~~~~~~~~~~~Dgty~~~s~L~v~~---~~~~~ytC~V~H~~   84 (94)
T cd05767          13 ELGEPNTLICFVDNFFPPVLNVTWLKNGVP-VTDGVSETRYYPRQDLSFQKFSYLNFTP---EEGDIYSCIVEHWG   84 (94)
T ss_pred             cCCCCeEEEEEEEEEECCcCEEEEEECCeE-ccCceEEeeeEeCCCCcEEEEEEEEEEC---CCCCeEEEEEEeCC
Confidence            346678999999995443  5689997543 22211 1112223333 77777887765   34568999998764

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07694 Ig2_CD4 Second immunoglobulin (Ig) domain of CD4

Probab=98.13  E-value=3.8e-05  Score=49.53  Aligned_cols=62  Identities=16%  Similarity=0.205  Sum_probs=44.8

Q ss_pred             eEEEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         31 VTATVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      -.+..|++++|.|.....  |.+.+.|...++.....     ...           ...+|.+.+++..|+|.++|.+..
T Consensus         9 ~~lL~G~sLtLtl~~~s~s~p~~~i~w~~P~n~~~~~-----~~~-----------~~ktL~~~qv~~qdSG~WtC~V~~   72 (88)
T cd07694           9 DHVLSGTNLTLTLHGSSNSLPAFKVEWRGPGNKSKQI-----LNQ-----------DKKTLNLVQLGPNDSGTWDCIVSV   72 (88)
T ss_pred             CeeecCCcEEEEEecCCCCCCCccEEEeCCCCcccee-----ccC-----------CccEEEeceeCcccCCEEEEEEEE
Confidence            357889999999999553  34599999765432110     011           122799999999999999999954

Ig2_CD4; second immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=98.12  E-value=4.7e-05  Score=52.08  Aligned_cols=81  Identities=12%  Similarity=0.188  Sum_probs=53.9

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC--Cc-eEEEEEEcCceeEEEeee------eeeecCcCEEEEeC-CceeEEEEEeeec
Q psy15734         26 EPVANVTATVGKEALMACVVENL--RE-YKVAWVKMITQTILSIHH------KVVTQNKRVSITFN-DHRSWFLHLRDVQ   95 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~--~~-~~v~W~~~~~~~~~~~~~------~~~~~~~~~~~~~~-~~~~~~L~i~~~~   95 (314)
                      .++....+..|..++|.|++++.  .. ..+.|+|.....++-...      .......++....+ ......|.|.+++
T Consensus         3 ~~~~~~lv~p~~sv~LsC~~sg~~~s~e~~~~wvRq~pg~lE~c~~~~~~g~~~~~~~~r~tcs~~~s~ntv~L~l~~L~   82 (115)
T cd05721           3 VQQSPVLASSNGAASLVCEYTYNGFSKEFRASLLKGADSAVEVCAVTGNMSNQLQTSLDGFNCDGTLGNEQVNFTLQNLR   82 (115)
T ss_pred             eecCCeEEcCCCCEEEEEEecCCccccEEEEEEEEeCCCCcEEEEEEeCCCccccccCCCeEEeEeCCCCEEEEEEcCCC
Confidence            34556778899999999999663  33 689999975433211111      11112345544443 3345689999999


Q ss_pred             CCCCeEEEEEE
Q psy15734         96 ETDRGWYMCQI  106 (314)
Q Consensus        96 ~~d~G~Y~C~~  106 (314)
                      .+|++.|.|..
T Consensus        83 a~DTa~Y~Ca~   93 (115)
T cd05721          83 ANQTDIYFCKI   93 (115)
T ss_pred             HHHCeEEEEEe
Confidence            99999999976

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>cd04981 IgV_H Immunoglobulin (Ig) heavy chain (H), variable (V) domain

Probab=98.07  E-value=1.8e-05  Score=55.60  Aligned_cols=74  Identities=15%  Similarity=0.214  Sum_probs=47.2

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCCe---e-eec--------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKGD---M-IIT--------------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~~---~-~~~--------------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|++++|.|...+..  ...+.|++....   . +..              ..++....  +.......|.|.
T Consensus         4 ~~~~~v~~G~~vtL~C~~~~~~~~~~~~~WYkQ~~g~~p~~l~~~~~~~~~~~~~~~~~~rf~~~~--~~~~~~~~L~I~   81 (117)
T cd04981           4 SGPGLVKPGQSLKLSCKASGFTFTSYGVNWVRQAPGKGLEWIGFINPGGGETYYADSVKGRFTITR--DTSKSTVYLQLN   81 (117)
T ss_pred             CCCeEEcCCCCEEEEEEEeCCCcccceEEEEEECCCCCcEEEEEEecCCCceEeCcccCCcEEEEE--EccCCEEEEEEC
Confidence            4556789999999999886543  456889874321   1 110              01111111  111123479999


Q ss_pred             ecCCCCCeEEEEEEee
Q psy15734        242 SILSHQFGSYRCVAVN  257 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n  257 (314)
                      ++..+|+|.|.|.+..
T Consensus        82 ~~~~~Dsa~YyCa~~~   97 (117)
T cd04981          82 SLTPEDTAVYYCARGL   97 (117)
T ss_pred             CCCHHHCEEEEEEEEc
Confidence            9999999999998865

IgV_H: Immunoglobulin (Ig) heavy chain (H), variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which can associate with any of the heavy chains. This family includes alpha, gamma, delta, epsilon, and mu heavy chains.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=98.07  E-value=7.2e-05  Score=49.84  Aligned_cols=69  Identities=12%  Similarity=0.034  Sum_probs=43.4

Q ss_pred             eecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        187 AFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +..|+..+|.|.|.|+-++  .+.|++++.. +............++ |...+.|.+.   ..+...|+|.+....
T Consensus        12 ~~~g~~~~L~C~a~gFyP~~i~v~W~~dg~~-~~~~~~~~~~p~~d~tyq~~s~l~~~---~~~~~~ysC~V~H~~   83 (93)
T cd05770          12 AENGKPNVLNCYVTGFHPPDIEIRLLKNGVK-IPKVEQSDLSFSKDWTFYLLKSTEFT---PTKGDEYACRVRHNS   83 (93)
T ss_pred             CcCCCceEEEEEEEEEeCCCCEEEEEECCEE-CCCcEECcEEECCCCCEEEEEEEEEC---CCCCCeEEEEEEECC
Confidence            3457778999999996554  5589997443 322111122223333 6666677666   356678999998854

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd00098 IgC Immunoglobulin Constant domain

Probab=98.07  E-value=1.9e-05  Score=53.26  Aligned_cols=70  Identities=16%  Similarity=0.295  Sum_probs=44.9

Q ss_pred             EcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         34 TVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..|+.+.|.|.+.+. | ...++|+++ +..+.....   .....++.+.+.      ..|.+......|.+.|+|.+.+
T Consensus        11 ~~~~~~~L~C~a~g~~P~~~~i~W~~~-g~~~~~~~~~~~~~~~~~gt~~~~------s~l~v~~~~~~~~~~y~C~v~h   83 (95)
T cd00098          11 LLGGSVTLTCLATGFYPPDITVTWLKN-GKELTSGVTTTPPVPNSDGTYSVS------SQLTVSPSDWNSGDTYTCVVTH   83 (95)
T ss_pred             HcCCCeEEEEEEeeEECCCcEEEEEEC-CEECCCceeccccccCCCCCEEEE------EEEEECHHHhCCCCCEEEEEEe
Confidence            468899999999886 5 478999995 443322111   111222233332      2577777767799999999976


Q ss_pred             CC
Q psy15734        109 VP  110 (314)
Q Consensus       109 ~~  110 (314)
                      .+
T Consensus        84 ~~   85 (95)
T cd00098          84 ES   85 (95)
T ss_pred             CC
Confidence            54

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=98.06  E-value=5.2e-05  Score=49.69  Aligned_cols=70  Identities=17%  Similarity=0.278  Sum_probs=46.4

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeE-eeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSR-LING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~-~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..+..+.|.|.+.++.+.  .+.|++++ ..+.......... ..++ |...+.|.+.   ..+...|+|++.+....
T Consensus         6 ~~~~~~~L~C~v~~f~P~~i~v~W~~~~-~~~~~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ysC~V~H~~l~   79 (83)
T PF07654_consen    6 ELGGSVTLTCLVSGFYPKDITVTWLKNG-KEVTEGVETTPPPPNSDGTYSVTSSLTVT---WNSGDEYSCRVTHESLP   79 (83)
T ss_dssp             HSTSEEEEEEEEEEEBSSTEEEEEEETT-EEETTTEEEEEEEEETTSEEEEEEEEEEE---TTTTGGEEEEEEETTSS
T ss_pred             cCCCCEEEEEEEEEEECCCcEEEEEecc-ceeeeeeeecccccccccceeeeEEEEec---CCCCCEEEEEEEECCCC
Confidence            348899999999995443  67899964 3332222222122 2344 8888888888   55566999999887543

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05761 Ig2_Necl-1-4_like Second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-4 (also known as cell adhesion molecules CADM3, CADM1, CADM2, and CADM4, respectively)

Probab=98.04  E-value=7.4e-05  Score=48.79  Aligned_cols=64  Identities=16%  Similarity=0.277  Sum_probs=37.4

Q ss_pred             EEEEEEecC-CCceEEEEEEcCceeEEEeeeeeee-cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVVT-QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.+ .|.+.+.|++++ ..+......... .++.+.+.      ..|.+......|.+.|+|.+.+.
T Consensus         2 ~~L~C~~~~~~P~~~v~W~~~~-~~l~~~~~~~~~~~~~~~~~~------s~l~~~~~~~d~g~~~~C~v~h~   67 (82)
T cd05761           2 VELTCTSSGSKPAATIRWFKGD-KELKGVKLKEEDENGKTFTVT------SSLRFQVDREDDGAPIICRVDHP   67 (82)
T ss_pred             EEEEEEecCcCcCCeEEEEECC-EEccCceeeEecCCCCEEEEE------EEEEEEcchhhCCCEEEEEEeCh
Confidence            689999976 477899999954 433211111111 11122221      14666555555667999999765

Ig2_Necl-1-4_like: domain similar to the second immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), Necl-3 (CADM2) and Necl-4 (CADM4). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cel

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=98.03  E-value=6.5e-05  Score=50.58  Aligned_cols=74  Identities=14%  Similarity=0.122  Sum_probs=42.8

Q ss_pred             CCcceEEEcCCcEEEEEEecC-CCceE--EEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe-EE
Q psy15734         27 PVANVTATVGKEALMACVVEN-LREYK--VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG-WY  102 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~-~~~~~--v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y  102 (314)
                      .+....+.+|+.++|.|.+.+ .|...  +.||+++ ..+....... .....      .....+|.+..- ++|.| .|
T Consensus         7 ~~~p~~~~eG~~~tL~C~v~g~~P~a~L~i~W~rG~-~~l~~~~~~~-~~~~~------~~~~stlt~~~~-r~D~g~~~   77 (100)
T cd05755           7 SPLPSWQPVGKNYTLQCDVPGVAPRQNLTVVLLRGN-ETLSRQPFGD-NTKSP------VNAPATITITVD-REDHGANF   77 (100)
T ss_pred             ecCCCcccCCCcEEEEEEEcCcCCCCcEEEEEeeCC-EEcccceecc-ccCCC------ceeEEEEEEecc-hhhCCcEE
Confidence            334445789999999999976 45554  7999954 4332111000 00001      112236776644 45555 89


Q ss_pred             EEEEecC
Q psy15734        103 MCQINTV  109 (314)
Q Consensus       103 ~C~~~~~  109 (314)
                      +|.+..+
T Consensus        78 sC~A~l~   84 (100)
T cd05755          78 SCETELD   84 (100)
T ss_pred             EEEEEec
Confidence            9999654

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=98.03  E-value=5.5e-05  Score=50.68  Aligned_cols=75  Identities=16%  Similarity=0.125  Sum_probs=45.4

Q ss_pred             CCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc-eeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD-YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      +....+..+..++|.|.|.|+-++  .+.|.+++.. ...+.. .......+.|...+.|.|..-..  ...|+|.+...
T Consensus         8 ps~~e~~~~~~~tL~C~a~gFyP~~I~v~W~kng~~-~~~~~~~~~~~~~~dty~~~S~L~vt~~~~--~~~ysC~V~H~   84 (96)
T cd07697           8 PSKKEIEKQGQGIYLCLLENFFPDVIQVHWREGNSP-SILGSQKSEKDKDNDVYSTTSWLTVTKDSL--GKKFRCIYKHE   84 (96)
T ss_pred             CCHHHHccCCCEEEEEEEEEEeCCCeEEEEEECCEE-CcCCeEeccEecCCCEEEEEEEEEECchhC--CCeEEEEEEEC
Confidence            333445556789999999996554  5589997443 222211 11112223577777887775432  33599999884


Q ss_pred             C
Q psy15734        259 L  259 (314)
Q Consensus       259 ~  259 (314)
                      .
T Consensus        85 g   85 (96)
T cd07697          85 G   85 (96)
T ss_pred             C
Confidence            4

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.99  E-value=2.6e-05  Score=52.34  Aligned_cols=80  Identities=16%  Similarity=0.238  Sum_probs=52.4

Q ss_pred             EcCCCcceeecCccEEEEEEEeecC-C--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFP-A--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p-~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..++.......+..++|.|.+.++. +  ..+.|.++++......  ......++.|...+.|.|..-..+-...|+|.+
T Consensus         8 l~pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~t--~~~~~~dgTys~~S~L~v~~~~W~~g~~ytC~V   85 (99)
T cd04986           8 LQRPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQT--SAESDQCGCYSVSSVLPGCAEEWNKGEPFACTV   85 (99)
T ss_pred             EECcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEEc--CcccCCCCCEEEEEEEEeCHHHhcCCCeEEEEE
Confidence            3455556666789999999999954 2  4778999865411111  111122334888889988865555555799999


Q ss_pred             eeCCC
Q psy15734        256 VNALG  260 (314)
Q Consensus       256 ~n~~g  260 (314)
                      .+...
T Consensus        86 ~H~~l   90 (99)
T cd04986          86 THPEG   90 (99)
T ss_pred             ECCCc
Confidence            88654

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=97.99  E-value=5.8e-05  Score=50.47  Aligned_cols=75  Identities=8%  Similarity=0.078  Sum_probs=48.9

Q ss_pred             ccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        191 QTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       191 ~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      ..+.+.|.+. |.|.+.|.|+++....    ........ ++.+...+.|.+......|...|+|+|.+..-.....+.+
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~----~~~~~~~~~~gt~tv~S~l~~~P~~~d~Gk~ltC~v~h~al~~~~~~~~   91 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGN----ANTTSKENGDGTVTVTSEYSLVPTPEANGKEVTCKVEHETLQEPQLLPV   91 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCC----eeEEEEeCCCCCEEEEEEEEEecCHHHCCCEEEEEEeCcccCCCeEEEE
Confidence            4688999775 7899999999862111    11111112 2235667788887766667779999999987555554444


Q ss_pred             E
Q psy15734        269 Y  269 (314)
Q Consensus       269 ~  269 (314)
                      +
T Consensus        92 ~   92 (95)
T cd07703          92 T   92 (95)
T ss_pred             E
Confidence            3

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.96  E-value=7.3e-05  Score=50.14  Aligned_cols=69  Identities=17%  Similarity=0.239  Sum_probs=45.7

Q ss_pred             cCccEEEEEEEeecCCc--eeEEecCCCeeeecCC-ceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGD-DYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~-~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .++.+.|.|.|.|+-+.  .+.|++++..  .... ....... ++.|...+.|.+..........|+|++....
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~--~~~~~~~~~~~~~dgty~~~s~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS--TSGVKTYPAVLQSGGLYTASSQLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE--CCCcEECCCEeCCCCCEEEEEEEEEeHHHcCCCCcEEEEEEeCC
Confidence            46679999999996553  5679997443  2221 1111122 3448888899888765544568999998865

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.93  E-value=0.00012  Score=49.02  Aligned_cols=71  Identities=17%  Similarity=0.129  Sum_probs=44.1

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..|+.++|.|.+.|+-++  .+.|++++................++ |...+.|.+..   ++...|+|.+......
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g~~~~~~~~~~~~~~~~dgTy~~~s~L~~~~---~~~~~ysC~V~H~~l~   85 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNGQEETEGVVSTELIPNGDWTYQILVMLETTP---SRGDTYTCVVEHSSLQ   85 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECCeecCCCceecceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEeCCCC
Confidence            468899999999995444  66899975432221111112222333 66667776654   3556899999887644

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd07705 Ig2_Necl-1 Second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=97.88  E-value=0.00025  Score=46.35  Aligned_cols=65  Identities=17%  Similarity=0.268  Sum_probs=38.6

Q ss_pred             EEEEEEecC-CCceEEEEEEcCceeEEEeeeeee-ecC-cCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVV-TQN-KRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      +.|.|.+.+ .|...|.|++++ ..+........ ..+ ..+.+.      ..|.|......|...|+|.+.+.+
T Consensus         2 ~~LtC~a~g~~P~~~ItW~k~g-~~l~~~~~~~~~~~~~~t~~~~------s~l~~~~~~~d~g~~~tC~v~h~~   69 (83)
T cd07705           2 AKLRCTSSGSKPAANIKWRKGD-QELEGAPTSVLEDGNGKTFTVS------SSVEFQVTREDDGAEITCSVGHES   69 (83)
T ss_pred             EEEEEEecCccCCCEeEEEECC-EECCCcceeEEECCCCCEEEEE------EEEEEEecchhCCCEEEEEEECcc
Confidence            689999977 488899999954 33221110111 111 112221      257776666667789999997653

Ig2_Necl-1: second immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3)). These nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 and Necl-2 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue and is important to the formation of synapses, axon bundles, and myel

>smart00406 IGv Immunoglobulin V-Type

Probab=97.88  E-value=5.7e-05  Score=49.09  Aligned_cols=64  Identities=17%  Similarity=0.294  Sum_probs=37.8

Q ss_pred             cEEEEEEEeecCCc--eeEEecCCC----eeeecC----C-------ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        192 TVELHCHTEAFPAS--LNYWTNEKG----DMIITG----D-------DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       192 ~~~l~C~~~g~p~p--~~~W~~~~~----~~~~~~----~-------~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ++.|.|.+.....+  .+.|++...    ..+...    .       .-++...........+|.|.+++.+|+|.|.|.
T Consensus         1 ~v~l~C~~~~~~~~~~~v~W~~~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~   80 (81)
T smart00406        1 SVTLSCKASGFTFSSYYVSWVRQPPGKGLEWLGYIGSSGSTYYQQSYKGRVTISKDTSKNDVSLTISNLRVEDTGTYYCA   80 (81)
T ss_pred             CEEEEEEEeccccceeEEEEEEeCCCCCeEEEEEEcCCCcEEECcccCCcEEEEecCcCCEEEEEEcCCCHHHCEEEEEc
Confidence            47899998876554  788988542    111110    0       001111111112345899999999999999996


Q ss_pred             E
Q psy15734        255 A  255 (314)
Q Consensus       255 a  255 (314)
                      +
T Consensus        81 v   81 (81)
T smart00406       81 V   81 (81)
T ss_pred             C
Confidence            3

>PHA03270 envelope glycoprotein C; Provisional

Probab=97.84  E-value=0.012  Score=49.50  Aligned_cols=163  Identities=12%  Similarity=0.108  Sum_probs=95.1

Q ss_pred             EEEEeeecCCCCeEEEEEEecC-C--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC---ceEEEc
Q psy15734         88 FLHLRDVQETDRGWYMCQINTV-P--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRR  161 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~-~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~~W~~  161 (314)
                      .|.|..++.+.+|.|+=...+. .  .....+.+..+.+|.+.....+    +.+|+...-.|.+..+-++   .+.|+.
T Consensus       183 ~L~I~slt~aTeGvY~Wr~~~~~~~~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~Y~AtC~va~YYPp~Sv~lrWf~  258 (466)
T PHA03270        183 RLVIQELTLATQGMYYWARGPADRPHRYGTWTRVRMFRRPSLSIRPHA----VLEGEPFGATCVAANYYPGDRAAFRWFE  258 (466)
T ss_pred             eEEEEEcccccceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEEe
Confidence            4999999999999999987432 2  2233455666678887665422    5689999999999876333   688988


Q ss_pred             CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe
Q psy15734        162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                       |+.++..                                            .    ...+.......++++..|+|++.
T Consensus       259 -ng~~V~~--------------------------------------------~----~~i~~~~~~~~dGfs~vStvtse  289 (466)
T PHA03270        259 -GGDEVFA--------------------------------------------P----ERVRTRVDAQRDGFSATSTLTSE  289 (466)
T ss_pred             -CCccccC--------------------------------------------c----ceeeeeeEecCCCeeEEEEEecc
Confidence             5443210                                            0    00001112233445566788776


Q ss_pred             ecCCC-CCeEEEEEEeeCCCCcee---EEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCC-CccceE
Q psy15734        242 SILSH-QFGSYRCVAVNALGETDG---FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP-SVSHRI  307 (314)
Q Consensus       242 ~~~~~-d~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~-~~~w~v  307 (314)
                      ..... ..=+.+|.+.-..+..+.   +......+-+.+.+.+    ..+.|.-.|.|.--|.. .+.|.|
T Consensus       290 a~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv----~F~dG~AVCtA~CVPegV~l~W~V  356 (466)
T PHA03270        290 ARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM----EFGGDEAVCTAACVPEGVTLAWLL  356 (466)
T ss_pred             ccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE----EEeCCEEEEeccccCCCCEEEEEe
Confidence            65433 334899999876554322   2222222233343433    23557788888765532 555643

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=97.79  E-value=0.00045  Score=46.15  Aligned_cols=77  Identities=13%  Similarity=0.027  Sum_probs=52.2

Q ss_pred             CcceeecCccEEE-EEEE-eecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        183 QLEGAFVSQTVEL-HCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       183 ~~~~v~~g~~~~l-~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ....+..|+.+.+ .|.+ .|.|.+.|.|+.+.....   . .......+ .++..++|.+......|.-.++|++.+..
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~---~-~~~~~~~ngT~TV~S~~~l~p~r~d~G~~vtC~V~H~a   84 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS---E-SHSQEHPNGTTTVTSEYIWVPSRHANGHPLTCVVSHPA   84 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc---c-eeeecCCCCCEEEEEEEEEEeCHHHCCcEEEEEEeCcc
Confidence            3445678899888 8876 679999999997632211   1 11111223 36677788887777777779999999886


Q ss_pred             CCce
Q psy15734        260 GETD  263 (314)
Q Consensus       260 g~~~  263 (314)
                      -...
T Consensus        85 l~~~   88 (97)
T cd07704          85 LQQD   88 (97)
T ss_pred             cCCC
Confidence            5433

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PHA03269 envelope glycoprotein C; Provisional

Probab=97.77  E-value=0.0036  Score=53.26  Aligned_cols=165  Identities=15%  Similarity=0.128  Sum_probs=97.1

Q ss_pred             eeEEEEEeeecCCCCeEEEEEEecC----CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC---ce
Q psy15734         85 RSWFLHLRDVQETDRGWYMCQINTV----PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP---YV  157 (314)
Q Consensus        85 ~~~~L~i~~~~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~  157 (314)
                      ....|.|.++...++|.|.=.+.+.    ......+.+.++.+|.+.....+    +.+|+...-.|.+..+-++   .+
T Consensus       287 ~~~pL~I~sltaATeGvY~Wrv~~~~n~t~~~~~~VtV~~yr~PsVsV~p~P----VL~Ge~YkAtC~vA~YYPp~Svrl  362 (566)
T PHA03269        287 SDFSLHILSLDASTEGTYIWRVIHTANKNVINEHHITVMSYKRPNITVIGDP----VLLGNPYAAYCKVNKYYPPHSVIV  362 (566)
T ss_pred             CccceEEeecccccCceEEEEEecCCCCceeeeeEEEEEEecCCCccccCCc----cccCCCceEEEEeeeecCCCceEE
Confidence            3457999999999999998665322    23334556677778877665422    5689999999999876333   68


Q ss_pred             EEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEE
Q psy15734        158 AWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHM  236 (314)
Q Consensus       158 ~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s  236 (314)
                      .|+. |+.++.                                                 ........... ++.++..|
T Consensus       363 rWf~-ng~~V~-------------------------------------------------~~~it~t~~~~~dGlFSrVS  392 (566)
T PHA03269        363 KWTS-NFGNIG-------------------------------------------------KNFITDAIKENADGLFSSVS  392 (566)
T ss_pred             EEEe-CCcccC-------------------------------------------------ccccccceeecCCCceEEEE
Confidence            8888 443321                                                 11111111112 23366677


Q ss_pred             EEEEeecCCCC--CeEEEEEEeeCCCCceeE---EEEEEEecCCCeeEEEEccccccEeEEEEEeeccCC--CccceE
Q psy15734        237 TLKIRSILSHQ--FGSYRCVAVNALGETDGF---IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       237 ~L~i~~~~~~d--~G~Y~C~a~n~~g~~~~~---~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      +|.+......|  .-..+|.+....+....+   ......+-+.+.+.+    ..+.|.-.|.|.--|..  .+.|.|
T Consensus       393 TLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm----~FedG~AVCtA~CVP~~~V~l~WlV  466 (566)
T PHA03269        393 ALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI----EIIDGHIVCLAKCVPRGVVHFNWWI  466 (566)
T ss_pred             EEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE----EEeCCEEEEecccccCCCceEEEEe
Confidence            88875443333  457899998765544222   222223333344433    23567788888776532  456754

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.76  E-value=0.0005  Score=45.63  Aligned_cols=69  Identities=14%  Similarity=0.228  Sum_probs=41.5

Q ss_pred             CCcEEEEEEec-CCCceEEEEEEcCceeEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         36 GKEALMACVVE-NLREYKVAWVKMITQTILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        36 g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      |+.+.|.|.+. +.|.+.+.|+.++.......... ....++.+.+..      .|.+..-...+...++|.+.+..
T Consensus        14 ~~~~~~~C~s~~~~P~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~S------~l~~~~~~~~~~~~~~C~~~~~~   84 (89)
T PF08205_consen   14 GEEVTLTCSSSGGYPPPQITWYLDGGPVVASNTTQSSSPDNGLFTVSS------TLTLTPTREDHGKTLTCRASHPA   84 (89)
T ss_dssp             TEEEEEEEEEEEEBS-EEEEEEETTCEECEEEEEEEEETTTTTEEEEE------EEEEETTGGGTTEEEEEEEEETT
T ss_pred             ceEEEEEEEeCCeECCeEEEEEECCCceeeeeeeeeeccCCCcceEEE------EEEEEcChHHCCeEEEEEEECCc
Confidence            77999999884 57889999999655431111111 122233333322      57766544456678999997653

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd00096 Ig Immunoglobulin domain

Probab=97.74  E-value=0.00017  Score=45.00  Aligned_cols=65  Identities=18%  Similarity=0.276  Sum_probs=40.8

Q ss_pred             EEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.+.+...+.|++.+...............      ........|.|.+++..|.|.|.|.+.+.
T Consensus         1 ~~l~C~~~~~~~~~~~W~~~~~~~~~~~~~~~~~~~------~~~~~~~~l~i~~~~~~d~g~y~C~~~~~   65 (74)
T cd00096           1 VTLTCLASGPPPPTITWLKNGKPLPSSVLTRVRSSR------GTSSGSSTLTISNVTLEDSGTYTCVASNS   65 (74)
T ss_pred             CEEEEEecCCCCCcEEEEECCEECCCcccEEecccc------CcceeEEEEEECccCcccCcEEEEEEecC
Confidence            478999988777899999965322110000000000      01112347999999999999999999654

Ig: immunoglobulin (Ig) domain found in the Ig superfamily. The Ig superfamily is a heterogenous group of proteins, built on a common fold comprised of a sandwich of two beta sheets. Members of this group are components of immunoglobulin, neuroglia, cell surface glycoproteins, such as, T-cell receptors, CD2, CD4, CD8, and membrane glycoproteins, such as, butyrophilin and chondroitin sulfate proteoglycan core protein. A predominant feature of most Ig domains is a disulfide bridge connecting the two beta-sheets with a tryptophan residue packed against the disulfide bond.

>cd05884 Ig2_Necl-3 Second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=97.72  E-value=0.00043  Score=45.18  Aligned_cols=64  Identities=14%  Similarity=0.249  Sum_probs=38.1

Q ss_pred             EEEEEEecC-CCceEEEEEEcCceeEEEeeeeee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVEN-LREYKVAWVKMITQTILSIHHKVV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      +.|.|.+.+ .|...++|++++ ..+........  ..++.+...      ..|.+..-...|...|+|.+.+.
T Consensus         2 ~~LtC~a~gf~P~~~itW~kng-~~l~~~~~~~~~~~~~~t~~~~------s~L~~~~~~~d~g~~ytC~v~h~   68 (83)
T cd05884           2 MQLTCKTSGSKPAADIRWFKND-KEIKDVKYLKEEDANRKTFTVS------STLDFRVDRSDDGVAIICRVDHE   68 (83)
T ss_pred             EEEEEEeCCccCCCEEEEEECC-EECcCceeeEeeCCCCCEEEEE------EEEEEEcccccCCCEEEEEEech
Confidence            689999977 577899999954 43322111111  112222222      25777655556667899999764

Ig2_Necl-3: second immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2)). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). These have an extracellular region containing three Ig-like domains, one transmembrane region, and one cytoplasmic region. Necl-3 has been shown to accumulate in tissues of the central and peripheral nervous system, where it is expressed in ependymal cells and myelinated axons. It is observed at the interface between the axon shaft and the myelin sheath. Ig domains are likely to participate in ligand binding and recognition.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=97.63  E-value=0.00054  Score=45.91  Aligned_cols=66  Identities=12%  Similarity=0.284  Sum_probs=36.8

Q ss_pred             CCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeeeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         36 GKEALMACVVENL-RE-YKVAWVKMITQTILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        36 g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      |+.++|.|.+.+. |. ..+.|++++...........  ...++.+...      ..|.   +...|.+.|+|.+.+.+
T Consensus        14 ~~~~~L~C~a~gF~P~~i~v~W~~~g~~~~~~~~~~~~~~~~d~ty~~~------s~l~---v~~~~~~~ytC~V~H~~   83 (93)
T cd07698          14 DGSLTLSCHATGFYPRDIEVTWLRDGEDSVDDVESGEILPNGDGTYQLW------VTLE---VPPEDKARYSCRVEHSG   83 (93)
T ss_pred             CCcEEEEEEEEEEeCCCcEEEEEECCEECcccccccceEECCCCeEEEE------EEEE---ECCCCCCEEEEEEEeCC
Confidence            6789999999984 43 59999995532111100000  0111122211      1343   44458899999997653

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=97.62  E-value=0.00029  Score=42.97  Aligned_cols=49  Identities=20%  Similarity=0.422  Sum_probs=35.8

Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..+|.|+|.+.    ..|.|+++ .......         +     .+|.+.+....-.|.|.|.+++
T Consensus         6 ~~~V~L~C~~~----tsi~W~kG-~~~~~~~---------~-----~tlnLGs~~~DPRG~Y~C~~s~   54 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKKG-KEILEVS---------N-----TLLDLGSRINDPRGTYSCKESE   54 (69)
T ss_pred             CceEEEEecCC----CcEEEecC-ccccccc---------c-----cEEeccCcccCCCcceEecCcc
Confidence            45899999762    55999993 4333221         1     2888888888889999998877

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=97.61  E-value=0.00023  Score=43.10  Aligned_cols=51  Identities=20%  Similarity=0.260  Sum_probs=33.8

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.+|+|+|...+.   .+.|.+++.. +.....              .+.+.+-. ++.|.|.|.+.+
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~-~~g~~~--------------~~~~~~~~-e~~G~Y~C~~~~   55 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQV-SQGSDE--------------KYLSLNHF-SSSGYYHCTADN   55 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCcc-CCCCCc--------------eEEeeccC-CCCceEEEEeCC
Confidence            468999999986532   2999997522 211111              44444555 889999999853

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PHA02982 hypothetical protein; Provisional

Probab=97.60  E-value=0.0035  Score=47.21  Aligned_cols=121  Identities=18%  Similarity=0.155  Sum_probs=76.9

Q ss_pred             cceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecC------------------CceeeeEeeCCeeeEEEEEEeecC
Q psy15734        184 LEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITG------------------DDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~------------------~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      ++...+++++.|.|... +..-....|+.+++..+...                  ..+.++...    ..|+|+|.+++
T Consensus        33 dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g----~~STLTIkk~~  108 (251)
T PHA02982         33 DVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSG----NSSTFTMKKPD  108 (251)
T ss_pred             hhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEec----cceeEEeccCC
Confidence            34567899999999853 33345678999776544421                  111222222    25799999999


Q ss_pred             CCCCeEEEEEEeeCCCCcee-EEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccceEEEEE
Q psy15734        245 SHQFGSYRCVAVNALGETDG-FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV  311 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v  311 (314)
                      .+..|-|+|+|....+..+. .--|.|+..   .+....-...-....+|.+-....+-..|.|.-.|
T Consensus       109 i~N~GCYtc~~ks~~~k~E~c~kCl~V~~~---~V~~~W~e~nNeT~V~CyVgS~~~dvp~W~V~GVv  173 (251)
T PHA02982        109 PQNLGCFTCEAKDAEGKEETCEKCLEIQKE---DILYVVEEHNNETIITCFVGSKHGDVPRFIVAGIV  173 (251)
T ss_pred             cccCCceEEEEecCCCchheeheeeeEecc---eEEEEEEecCCeEEEEEEEEeccCCCccEEEeeEE
Confidence            99999999999987765543 444545322   12222223333456999998877776688886554

>PHA03273 envelope glycoprotein C; Provisional

Probab=97.57  E-value=0.039  Score=46.99  Aligned_cols=165  Identities=15%  Similarity=0.141  Sum_probs=94.8

Q ss_pred             EEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEE--EeCCceeeecCcceeEEecCceEEEEEEeccc-CCC--ceEEE
Q psy15734         87 WFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQV--VVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP--YVAWR  160 (314)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v--~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~~~W~  160 (314)
                      ..|.|..++..++|.|+=...+. +......++.|  +.+|.+...+.+    +.+|+...-.|.+..+ |.-  .+.|+
T Consensus       198 ~~LtI~sltaaTeGvYtWr~~~~n~t~~~~~~VtV~~yr~Psvsv~~~P----vL~Ge~y~A~C~aa~YYPp~Sv~~rWf  273 (486)
T PHA03273        198 FPLTIKSVDWRTAGVYVWSLYAKNGTLVNSTSVTVSTYNAPLVDLSVHP----SLKGENYRAVCVVASYFPHSSVKLRWY  273 (486)
T ss_pred             cceEEEecchhhceEEEEEEecCCCceeeeeEEEEEEecCCcccccCCc----cccCCCceEEEEeeeecCCCceEEEEE
Confidence            46999999999999998665332 22223334444  668887665422    6689999999999876 332  68999


Q ss_pred             cCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734        161 REDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      . |+.++.....                              -.....|+.                 ++.++..|+|.+
T Consensus       274 ~-dg~~V~~~~~------------------------------~~~~~~~~~-----------------~gl~T~vStlt~  305 (486)
T PHA03273        274 K-NAKEVDFTKY------------------------------VTNASSVWV-----------------DGLITRISTLSI  305 (486)
T ss_pred             e-CCeecccccc------------------------------ceeeEEEec-----------------CCceEEEEEEec
Confidence            8 5543210000                              000111211                 122345568888


Q ss_pred             eecCC-CCCeEEEEEEeeCCCCce-eE--EEEEEEecCCCeeEEEEccccccEeEEEEEeeccC--CCccceE
Q psy15734        241 RSILS-HQFGSYRCVAVNALGETD-GF--IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVV--PSVSHRI  307 (314)
Q Consensus       241 ~~~~~-~d~G~Y~C~a~n~~g~~~-~~--~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~--~~~~w~v  307 (314)
                      ..... +..-..+|.+....+..+ +.  ......+-+.+.+.+    ..+.|.-.|.|.--|.  -.+.|.|
T Consensus       306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~----~F~~G~AVCtA~CVP~egV~l~W~v  374 (486)
T PHA03273        306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV----TVEDGDAVCTAKCVPSTGVFVSWSV  374 (486)
T ss_pred             cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE----EEeCCEEEEecccccCCCeeEEEEc
Confidence            77544 445589999987655432 22  222223333344433    2355778888876654  2555644

>cd05847 IgC_CH2_IgE CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin E (IgE)

Probab=97.53  E-value=0.00099  Score=44.59  Aligned_cols=69  Identities=13%  Similarity=0.201  Sum_probs=39.8

Q ss_pred             cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe---eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSI---HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .++.+.|.|.+.+. | ...|.|++++ ..+...   .......++.+.+..      .|.+..-...+...|+|.+.+.
T Consensus        13 ~~~~~~L~C~a~gFyP~~I~vtW~~dg-~~~~~~~~~s~~~~~~~~Ty~~~S------~L~v~~~~w~~~~~ytC~V~H~   85 (94)
T cd05847          13 TSETIQLLCLISGYTPGTIEVEWLVDG-QVATLVAASTAPQKEEGSTFSTTS------ELNVTQEDWKSGKTYTCKVTHQ   85 (94)
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECC-EECcCceeecccEECCCCcEEEEE------EEEEchHHhcCCCeEEEEEEEC
Confidence            45679999999884 4 3789999954 332111   001111223333322      5666654444667899999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        86 ~   86 (94)
T cd05847          86 G   86 (94)
T ss_pred             C
Confidence            3

IgC_CH2_IgE: The second constant domain of the heavy chain of immunoglobulin E (IgE). The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma, and mu, all consisting of a variable domain (VH) and three (in alpha, delta, and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). The different classes of antibodies vary in their heavy chains; the IgE class has the epsilon type. This domain (Cepsilon2) of IgE is in place of the flexible hinge region found in IgG.

>PHA02633 hypothetical protein; Provisional

Probab=97.50  E-value=0.0003  Score=41.74  Aligned_cols=38  Identities=16%  Similarity=0.122  Sum_probs=33.9

Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      .|.|-++..+|+|.|.|...|..-....++.|.|....
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~~   56 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLRI   56 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeecc
Confidence            89999999999999999999988888888888887654

>PHA03271 envelope glycoprotein C; Provisional

Probab=97.48  E-value=0.047  Score=45.81  Aligned_cols=235  Identities=14%  Similarity=0.233  Sum_probs=126.6

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEc-------------CceeEEEe--------eeee------
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-------------ITQTILSI--------HHKV------   70 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~-------------~~~~~~~~--------~~~~------   70 (314)
                      ....|.++-..+++-+...++-.+.|...-.|+..-.|..-             +.+.++..        ....      
T Consensus        91 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (490)
T PHA03271         91 AHKMPSIVCDKEEVFVFLNKTGRFVCTLKVDPPSDNEWSNFALDLIFNPIEYHANEKNVEAARIAGLYGVPGSDYAYPRP  170 (490)
T ss_pred             cccCCceeeccceEEEEEcCCCcEEEEEEeCCCCcchhhhheeeeeecchhhcccccchhhhhhcccccCCCccccCCCH
Confidence            34578888888889999999999999987666655566321             10000000        0000      


Q ss_pred             ------e-------------ecCcCEEEEeC-CceeEEEEEeeecCCCCeEEEEEEec---CCCcceeEEEEEEe-CCce
Q psy15734         71 ------V-------------TQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMCQINT---VPMTSQKGYLQVVV-PPRI  126 (314)
Q Consensus        71 ------~-------------~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C~~~~---~~~~~~~~~l~v~~-~p~~  126 (314)
                            +             ..+.++.+-.+ ......|.|.++...|+|-|+-...+   .........+.+.. +|.+
T Consensus       171 ~~~~~~~~~~~~~~~~~~~~~~~~ky~i~~~ktt~~m~v~I~svD~~t~Gy~~v~~~d~~N~~i~e~~~~~~v~~RPPsV  250 (490)
T PHA03271        171 SELISSIRRDPQGTFWTSPSPHGNKYFIWINKTTNTMGVEIRNVDYADNGYIQVIMRDPFNRPLLDKHIYIRVCQRPASV  250 (490)
T ss_pred             HHHhHHhhcCCCCccccCCCCCCceeEEeeccccceeeEEEEEeecccceEEEEEecCCCCCccccceEEEEEEecCCCc
Confidence                  0             00112222211 11234799999999999966444432   23334444555544 5556


Q ss_pred             eeecCcceeEEecCceEEEEEEecccCCC---ceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecC
Q psy15734        127 LLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFP  203 (314)
Q Consensus       127 ~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p  203 (314)
                      ...+.+    +.+|+...-.|.+..+-+|   .+.|+. ||.+.....                               -
T Consensus       251 sV~a~P----VL~Ge~YkAtC~vAnYYPP~SvrlrWf~-nG~~V~~~~-------------------------------~  294 (490)
T PHA03271        251 DVLAPP----VLSGENYKASCIVRHFYPPGSVYVSWRQ-NGNIATPRK-------------------------------D  294 (490)
T ss_pred             cccCCc----cccCCCceEEEEeeeecCCCceEEEEEe-CCccccCcc-------------------------------c
Confidence            554422    5689999999999876333   789998 554421000                               0


Q ss_pred             CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE--EEEEEecCCCeeEEE
Q psy15734        204 ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI--KVYVNLVDGDIFQIR  281 (314)
Q Consensus       204 ~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~--~l~V~~~~~~~~~~~  281 (314)
                      .....|+.++               .++.+..|+|.+.+...+..-..+|.+.-..+......  .....+-+.+.+.+ 
T Consensus       295 rdt~~~w~d~---------------~~g~S~VSTltl~a~~~~~PPsLRCeV~W~rd~v~s~rnAaatP~VY~~P~ISv-  358 (490)
T PHA03271        295 RDGSFWWFES---------------GRGATLVSTITLGNSGIDPPPKISCLVAWKQGDMISTTNATAIPTVYHHPRISL-  358 (490)
T ss_pred             cceeEEEecC---------------CCceeEEEEEEcccccCCCCCCceEEEEEccCCceeeeecccCCccccCCeEEE-
Confidence            1122332221               12223345777766544455589999987665333322  22222223333332 


Q ss_pred             EccccccEeEEEEEeeccC-CCccceE
Q psy15734        282 KMSRLHMGAYLCIASNGVV-PSVSHRI  307 (314)
Q Consensus       282 ~~~~~~~g~~~C~a~~~~~-~~~~w~v  307 (314)
                         ..+.|.-.|.|.--|. -.+.|.|
T Consensus       359 ---~FedG~AVCtA~CVP~gV~lrWlV  382 (490)
T PHA03271        359 ---AFKDGYAICTIECVPSGITVRWLV  382 (490)
T ss_pred             ---EEeCCEEEEeccccCCCcEEEEEe
Confidence               3355777888876552 2555644

>smart00407 IGc1 Immunoglobulin C-Type

Probab=97.44  E-value=0.0018  Score=41.35  Aligned_cols=65  Identities=14%  Similarity=0.305  Sum_probs=38.0

Q ss_pred             EEEEEEecCC-Cc-eEEEEEEcCceeEEEeee-ee-eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         39 ALMACVVENL-RE-YKVAWVKMITQTILSIHH-KV-VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        39 ~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~-~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ++|.|.+.+. |. ..+.|++++......... .. ...++.+.+..      .|.|......+...|+|.+.+.
T Consensus         2 ~~L~C~a~gf~P~~i~v~W~k~g~~~~~~~~~~~~~~~~~gt~~~~s------~L~v~~~~~~~~~~~tC~V~H~   70 (75)
T smart00407        2 ATLVCLVSGFYPPDITVTWLRNGQEVTSGVSTTDPLKNSDGTYFLSS------YLTVSASTWESGDTYTCQVTHE   70 (75)
T ss_pred             eEEEEEEEeEeCCCCEEEEEECCEECCCCEEECceEECCCCCEEEEE------EEEEccccCCCCCEEEEEEEEc
Confidence            6899999885 44 699999954321111000 00 11233333322      5776666667778999999654

>cd07696 IgC_CH3 CH3 domain (third constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.43  E-value=0.0016  Score=43.80  Aligned_cols=78  Identities=17%  Similarity=0.275  Sum_probs=44.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--C-ceEEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         27 PVANVTATVGKEALMACVVENL--R-EYKVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~-~~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      +|..-.+..|+.++|.|.+.+.  | ...|.|.|+++........ .....++.+.+..      .|.+..-...+...|
T Consensus         5 pPs~~~l~~~~~~tLtC~v~gf~yP~~i~v~W~r~~~~~~~~~~~~~~~~~dgty~~~s------~l~v~~~~w~~g~~y   78 (96)
T cd07696           5 PPSPKQLLLTKSVKLTCLVTNLTSPEGVNVTWTRGSGEPVKASIQPPESHNNATLSVTS------TLNVSTDDWISGDTF   78 (96)
T ss_pred             CcCHHHhccCCCeEEEEEEeCCCCCCCcEEEEEECCeEeeeEEecccccCCCCCEEEEE------EEEeCHHHccCCCcE
Confidence            3444446678999999999876  3 3688999965433221111 0111223333322      455555443345579


Q ss_pred             EEEEecCC
Q psy15734        103 MCQINTVP  110 (314)
Q Consensus       103 ~C~~~~~~  110 (314)
                      +|.+.+.+
T Consensus        79 sC~V~H~~   86 (96)
T cd07696          79 QCKVTHPD   86 (96)
T ss_pred             EEEEECCC
Confidence            99997643

IgC_CH3: The third immunoglobulin constant domain (IgC) of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07699 IgC_L Immunoglobulin Constant domain

Probab=97.41  E-value=0.0011  Score=45.12  Aligned_cols=76  Identities=16%  Similarity=0.270  Sum_probs=44.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe-e-ee-eeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         27 PVANVTATVGKEALMACVVENL-R-EYKVAWVKMITQTILSI-H-HK-VVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~-~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      ++.......++.++|.|.+.+. | ...|.|++++ ..+... . .. ....++.+.+..      .|.+..-...+...
T Consensus         8 ~p~~~~~~~~~~~~L~C~~~gfyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~   80 (100)
T cd07699           8 PPSSEELEKSGKATLVCLINDFYPGFATVQWKVDG-ATVSSGVQTSTTEQQSDNTYSLSS------YLTLTKSDWNKHKV   80 (100)
T ss_pred             CCCHHHHccCCCcEEEEEEEeEECCCCEEEEEECC-EECcccEeccccEECCCCCEEEEE------EEEEcHHHhCCCCe
Confidence            3444445567889999999873 4 5789999954 333111 0 00 011133343322      56666555555678


Q ss_pred             EEEEEecC
Q psy15734        102 YMCQINTV  109 (314)
Q Consensus       102 Y~C~~~~~  109 (314)
                      |+|.+.+.
T Consensus        81 ~sC~V~H~   88 (100)
T cd07699          81 YTCEVTHE   88 (100)
T ss_pred             EEEEEEec
Confidence            99999754

IgC_L: Immunoglobulin (Ig) light chain constant (C) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>cd05772 IgC_SIRP Signal-regulatory protein (SIRP) immunoglobulin-like domain

Probab=97.35  E-value=0.0027  Score=43.95  Aligned_cols=71  Identities=14%  Similarity=0.284  Sum_probs=40.0

Q ss_pred             EEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeeee-ecC-cCEEEEeCCceeEEEEEeeecCCCCe-EEEEEE
Q psy15734         32 TATVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKVV-TQN-KRVSITFNDHRSWFLHLRDVQETDRG-WYMCQI  106 (314)
Q Consensus        32 ~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~-~~~-~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y~C~~  106 (314)
                      ....|+.++|.|.+.+. | ...++|++++ ..+........ ..+ +.+.+.      ..|.+.. ...|.| .|+|.+
T Consensus        17 ~~~~g~~~tL~C~a~gF~P~~i~v~W~kng-~~~~~~~~~~~p~~d~~ty~~~------S~L~~~~-~~~d~~~~ytC~V   88 (111)
T cd05772          17 RANPGQSVNFTCSAHGFSPRDITVKWLKNG-NELSAEQPNITPEGDSVSYNVT------STVQVKL-TEDDVHSQVTCEV   88 (111)
T ss_pred             ccCCCCCEEEEEEEeeEeCCCCEEEEEECC-EECcccccceeeCCCCCcEEEE------EEEEEEC-ccccccCceEEEE
Confidence            34568889999999884 4 3799999954 43321111111 111 122222      1455554 445544 599999


Q ss_pred             ecCC
Q psy15734        107 NTVP  110 (314)
Q Consensus       107 ~~~~  110 (314)
                      .+.+
T Consensus        89 ~H~~   92 (111)
T cd05772          89 QHRT   92 (111)
T ss_pred             EeCC
Confidence            7654

IgC_SIRP: Immunoglobulin-like domain of signal-regulatory proteins (SIRP); the signal-regulatory proteins (SIRP) are Ig-like cell surface receptors detected in hematopoietic and non-hematopoietic cells. While their extracellular domains are similar, SIRP are classified as alpha or beta based on the length of the intracytoplasmic domain. Those having a 110- to 113-amino acid tail are classified as SIRP-alpha, and those having a 5-amino acid tail as SIRP-beta. SIRP-alpha and SIRP-beta molecules are thought to have complementary roles in signal regulation: SIRP-alpha inhibit signalling via their immunoreceptor tyrosine (IT)-based inhibition motifs while SIRP-beta are activating. SIRP-beta lack the cytoplasmic domainof SIRP-alpha, and associate with at least one other transmembrane protein (DAP-12 or KARAP). The IT-based activation motifs within DAP-12's cytoplasmic domain may link SIRP-beta to the activating

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=97.15  E-value=0.00051  Score=48.22  Aligned_cols=83  Identities=17%  Similarity=0.272  Sum_probs=46.5

Q ss_pred             ecCccEEEEEEEeec-----CCceeEEecCCCeeeecCCceeee--------EeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        188 FVSQTVELHCHTEAF-----PASLNYWTNEKGDMIITGDDYEDS--------RLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .-.+++.|.|.++..     +...+.|.+++..+..-......+        .....-.++.+|.+...+.- .|+|+|+
T Consensus        25 ~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTCe  103 (130)
T PF08204_consen   25 VCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTCE  103 (130)
T ss_dssp             TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEEE
T ss_pred             ecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEEE
Confidence            457899999999752     334678998654433222111111        00111223457888875544 8999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      +.......+..+.|+..
T Consensus       104 Vt~~~~ege~~i~Lk~~  120 (130)
T PF08204_consen  104 VTELSREGETTIELKYR  120 (130)
T ss_dssp             EEETTEEEEEEEEEEE-
T ss_pred             EEecCCCceEEEEEEEE
Confidence            99988777788777664

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>cd05768 IgC_CH4 CH4 domain (fourth constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.14  E-value=0.0027  Score=43.27  Aligned_cols=76  Identities=13%  Similarity=0.190  Sum_probs=41.2

Q ss_pred             CcceEEEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeee--eec----CcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         28 VANVTATVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKV--VTQ----NKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~--~~~----~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +....+..|..++|.|.+.+. | ...+.|++++ ..+.......  ...    ++.+.+..      .|.|..-...+.
T Consensus         8 p~~~~~~~~~~~tL~C~a~gFyP~~i~v~W~k~g-~~~~~~~~~~~~~~~~~~~dgTy~~~s------~L~v~~~~w~~~   80 (102)
T cd05768           8 PPSEELSLQETATLTCLVKGFSPSDIFVKWLQNG-QPLSKQKYVTTAPMQEPGGNESYFLYS------KLTVSAEDWNAG   80 (102)
T ss_pred             cChHHhCcCCceEEEEEEeeEeCCCCEEEEEECC-EECCcccccccCcccccCCCCeEEEEE------EEEEcHHHhcCC
Confidence            333344457889999999884 3 3678999954 3221110000  000    12233221      466644333455


Q ss_pred             eEEEEEEecCC
Q psy15734        100 GWYMCQINTVP  110 (314)
Q Consensus       100 G~Y~C~~~~~~  110 (314)
                      ..|+|.+.+.+
T Consensus        81 ~~ytC~V~H~~   91 (102)
T cd05768          81 DVFTCVVGHEA   91 (102)
T ss_pred             CcEEEEeEeCC
Confidence            68999997643

IgC_CH4: The fourth immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd05721 IgV_CTLA-4 Immunoglobulin (Ig) domain of cytotoxic T lymphocyte-associated antigen 4 (CTLA-4)

Probab=97.14  E-value=0.0079  Score=41.35  Aligned_cols=20  Identities=15%  Similarity=0.413  Sum_probs=18.4

Q ss_pred             EEEEEeecCCCCCeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..|.|.+++.+|.+.|.|..
T Consensus        74 v~L~l~~L~a~DTa~Y~Ca~   93 (115)
T cd05721          74 VNFTLQNLRANQTDIYFCKI   93 (115)
T ss_pred             EEEEEcCCCHHHCeEEEEEe
Confidence            49999999999999999975

IgV_CTLA-4: domain similar to the variable(v)-type immunoglobulin (Ig) domain found in cytotoxic T lymphocyte-associated antigen 4 (CTLA-4). CTLA-4 is involved in the regulation of T cell response, acting as an inhibitor of intracellular signalling. CTLA-4 is similar to CD28, a T cell co-receptor protein that recognizes the B7 proteins (CD80 and CD86). CD28 binding of the B7 proteins occurs after the presentation of antigen to the T cell receptor (TCR) via the peptide-MHC complex on the surface of an antigen presenting cell (APC). CTLA-4 also binds the B7 molecules with a higher affinity than does CD28. The B7/CTLA-4 interaction generates inhibitory signals down-regulating the response, and may prevent T cell activation by weak TCR signals. CD28 and CTLA-4 then elicit opposing signals in the regulation of T cell responsiveness and homeostasis. T cell activation leads to increased

>PF07654 C1-set: Immunoglobulin C1-set domain; InterPro: IPR003597 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=97.11  E-value=0.0051  Score=40.15  Aligned_cols=65  Identities=17%  Similarity=0.316  Sum_probs=39.2

Q ss_pred             CCcEEEEEEecCC-C-ceEEEEEEcCceeEEE---eeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         36 GKEALMACVVENL-R-EYKVAWVKMITQTILS---IHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        36 g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      ++.+.|.|.+.+. | ...|.|++++. .+..   ........++.+.+..      .|.+.   ..+...|+|.+.+.+
T Consensus         8 ~~~~~L~C~v~~f~P~~i~v~W~~~~~-~~~~~~~~~~~~~~~dgty~~~s------~l~v~---~~~~~~ysC~V~H~~   77 (83)
T PF07654_consen    8 GGSVTLTCLVSGFYPKDITVTWLKNGK-EVTEGVETTPPPPNSDGTYSVTS------SLTVT---WNSGDEYSCRVTHES   77 (83)
T ss_dssp             TSEEEEEEEEEEEBSSTEEEEEEETTE-EETTTEEEEEEEEETTSEEEEEE------EEEEE---TTTTGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEEeccc-eeeeeeeecccccccccceeeeE------EEEec---CCCCCEEEEEEEECC
Confidence            7899999999873 3 46899999543 3211   0111112344444432      45555   566668999997654

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C1-set domains, which are classical Ig-like domains resembling the antibody constant domain. C1-set domains are found almost exclusively in molecules involved in the immune system, such as in immunoglobulin light and heavy chains, in the major histocompatibility complex (MHC) class I and II complex molecules [, ], and in various T-cell receptors.; PDB: 3BVN_D 3BXN_A 3PWV_E 3L9R_F 2XFX_B 1BMG_A 1K8I_A 3M1B_G 3M17_C 1EXU_A ....

>cd05766 IgC_MHC_II_beta Class II major histocompatibility complex (MHC) beta chain immunoglobulin domain

Probab=97.09  E-value=0.0056  Score=40.99  Aligned_cols=67  Identities=18%  Similarity=0.233  Sum_probs=38.2

Q ss_pred             EcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe-eeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         34 TVGKEALMACVVENL-R-EYKVAWVKMITQTILSI-HHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..|+.++|.|.+.+. | ...+.|++++ ..+... ....  ...++.+.+..      .|.+   ...+...|+|.+.+
T Consensus        12 ~~~~~~~L~C~~~gFyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~dgTy~~~s------~L~~---~~~~~~~ysC~V~H   81 (94)
T cd05766          12 SLSHPHLLVCHVWGFYPPEITVKWFKNG-QEETEGVVSTELIPNGDWTYQILV------MLET---TPSRGDTYTCVVEH   81 (94)
T ss_pred             cCCCCeEEEEEEeeecCCCCEEEEEECC-eecCCCceecceEECCCCcEEEEE------EEEE---cCCCCCEEEEEEEe
Confidence            368899999999884 4 3589999954 332211 0001  11122233221      3443   34566789999976


Q ss_pred             CC
Q psy15734        109 VP  110 (314)
Q Consensus       109 ~~  110 (314)
                      .+
T Consensus        82 ~~   83 (94)
T cd05766          82 SS   83 (94)
T ss_pred             CC
Confidence            54

IgC_MHC_II_beta: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II beta chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosome be

>cd05769 IgC_TCR_beta T cell receptor (TCR) beta chain constant immunoglobulin domain

Probab=97.06  E-value=0.0046  Score=43.01  Aligned_cols=82  Identities=13%  Similarity=0.237  Sum_probs=45.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeee---eeeecC-cCEEEEeCCceeEEEEEeeecCCC-C
Q psy15734         27 PVANVTATVGKEALMACVVENL-RE-YKVAWVKMITQTILSIHH---KVVTQN-KRVSITFNDHRSWFLHLRDVQETD-R   99 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~---~~~~~~-~~~~~~~~~~~~~~L~i~~~~~~d-~   99 (314)
                      ++....+.+++.++|.|.+.+. |. ..|.|++++ ..+.....   .....+ +.+.+.      ..|.|..-...| .
T Consensus         9 ~ps~~e~~~~~~~tL~Cla~gFyP~~I~V~W~kng-~~l~~g~~~~~~~~~~~~gTYs~~------S~L~v~~~~w~~~~   81 (115)
T cd05769           9 PPSEAEIRNKRKATLVCLATGFYPDHVSLSWKVNG-KEVTDGVATDPQALRENTSTYSIS------SRLRVSATEWFNPR   81 (115)
T ss_pred             CcChHHhccCCCcEEEEEEEeEeCCCcEEEEEECC-EECCCCcccccceecCCCCeEEEE------EEEEEChHHhccCC
Confidence            3434444467789999999884 44 689999954 33221100   001111 222222      256666555444 5


Q ss_pred             eEEEEEEecCCCccee
Q psy15734        100 GWYMCQINTVPMTSQK  115 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~  115 (314)
                      ..|+|.+.+.+.....
T Consensus        82 ~~ytC~V~H~g~~~~~   97 (115)
T cd05769          82 NTFTCIVQFYGGTDTD   97 (115)
T ss_pred             CeEEEEEEEeCCccce
Confidence            6899999765544433

IgC_TCR_beta: Constant domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the beta chain. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The antigen binding site is formed by the variable domains of the alpha and beta chains, located at the N-terminus of each chain. Alpha/beta TCRs recognize antigens differently from gamma/delta TCRs.

>cd05719 Ig2_PVR_like Second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155) and similar proteins

Probab=97.05  E-value=0.0084  Score=40.19  Aligned_cols=65  Identities=14%  Similarity=0.217  Sum_probs=38.4

Q ss_pred             CcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         37 KEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        37 ~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ....+.|.+ .+.|...|.|+++.......  ......++.+.+..      .|.+......|...|+|.+.+.
T Consensus        16 ~~~va~C~s~~gkP~a~ItW~~~~~~~~~~--~~~~~~~g~~tv~S------~l~~~p~~~d~G~~~tC~v~h~   81 (95)
T cd05719          16 PVTVATCVSANGKPPATISWETTLGGEAET--QSKENPNGTVTVTS------EYRLVPSREANGKELTCVVSHP   81 (95)
T ss_pred             ccEEEEEECCCCcCCCEEEEEeCCCCccee--EeecCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence            456779999 46799999999952111111  11112223333332      5777665555566899999764

Ig2_PVR_like: domain similar to the second immunoglobulin (Ig) domain of poliovirus receptor (PVR, also known as CD155). Poliovirus (PV) binds to its cellular receptor (PVR/CD155) to initiate infection. CD155 is a membrane-anchored, single-span glycoprotein; its extracellular region has three Ig-like domains. There are four different isotypes of CD155 (referred to as alpha, beta, gamma, and delta), these result from alternate splicing of the CD155 mRNA, and have identical extracellular domains. CD155-beta and - gamma, are secreted, CD155-alpha and delta are membrane-bound and function as PV receptors. The virus recognition site is contained in the amino-terminal domain, D1. Having the virus attachment site on the receptor distal from the plasma membrane may be important for successful initiation of infection of cells by the virus. CD155 binds in the poliovirus

>PHA02982 hypothetical protein; Provisional

Probab=97.02  E-value=0.024  Score=42.87  Aligned_cols=124  Identities=12%  Similarity=0.229  Sum_probs=72.1

Q ss_pred             cceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEee--eeeee-----c---CcCEEEEeCCceeEEEEEeeecCC
Q psy15734         29 ANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIH--HKVVT-----Q---NKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~--~~~~~-----~---~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      .++.+..+++|.|.|..... .-....|...++.-+....  ...+.     .   ...+.++.++.. .+|+|.++..+
T Consensus        32 ~dv~a~vd~~V~L~C~~~~~~~i~~~~W~~~~~~~la~~~~~~~~iN~~~y~~~~~kd~y~~sv~g~~-STLTIkk~~i~  110 (251)
T PHA02982         32 ADVNATVDQEVKLQCLFKDADEISRAMWKGDAGFMLAQEANGGTGINAFNYVPGPYKDKYALSVSGNS-STFTMKKPDPQ  110 (251)
T ss_pred             hhhhccCCCcEEEEecCCCcchhhhheeeCCCCeEEEeeecCcceeccccccCCccceeEEEEEeccc-eeEEeccCCcc
Confidence            45667889999999997543 3467899985543222111  11111     1   112334433333 48999999999


Q ss_pred             CCeEEEEEEecCCCcce--eEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEecccCCCceEEEc
Q psy15734         98 DRGWYMCQINTVPMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGYPEPYVAWRR  161 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~p~p~~~W~~  161 (314)
                      +.|.|+|.+........  ...|.|+....+..        +.++. ...+.|-+-+...+...|.-
T Consensus       111 N~GCYtc~~ks~~~k~E~c~kCl~V~~~~V~~~--------W~e~nNeT~V~CyVgS~~~dvp~W~V  169 (251)
T PHA02982        111 NLGCFTCEAKDAEGKEETCEKCLEIQKEDILYV--------VEEHNNETIITCFVGSKHGDVPRFIV  169 (251)
T ss_pred             cCCceEEEEecCCCchheeheeeeEecceEEEE--------EEecCCeEEEEEEEEeccCCCccEEE
Confidence            99999999975443333  33466633221111        12233 34568987766444348876

>cd04986 IgC_CH2 CH2 domain (second constant Ig domain of the heavy chain) in immunoglobulin

Probab=97.02  E-value=0.004  Score=41.89  Aligned_cols=76  Identities=17%  Similarity=0.208  Sum_probs=42.2

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe-EE
Q psy15734         27 PVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG-WY  102 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G-~Y  102 (314)
                      +|.......+..++|.|.+.+..   ...|.|.+++...... .......++.+.+..      .|.+..- ...+| .|
T Consensus        10 pPs~e~l~~~~~atLtClV~~f~~P~~i~V~W~~~g~~~~~~-t~~~~~~dgTys~~S------~L~v~~~-~W~~g~~y   81 (99)
T cd04986          10 RPALEDLLLGSSASLTCTLSGLRDPEGAVFTWTPSGGKEAVQ-TSAESDQCGCYSVSS------VLPGCAE-EWNKGEPF   81 (99)
T ss_pred             CcChHHhCcCCccEEEEEEeccCCCCCeEEEEEECCccCcEE-cCcccCCCCCEEEEE------EEEeCHH-HhcCCCeE
Confidence            44434455688999999998843   4789999965431100 000111233333322      5665532 33344 59


Q ss_pred             EEEEecCC
Q psy15734        103 MCQINTVP  110 (314)
Q Consensus       103 ~C~~~~~~  110 (314)
                      +|.+.+.+
T Consensus        82 tC~V~H~~   89 (99)
T cd04986          82 ACTVTHPE   89 (99)
T ss_pred             EEEEECCC
Confidence            99997643

IgC_CH2: The second immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fc fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>KOG1480|consensus

Probab=96.99  E-value=0.00019  Score=64.05  Aligned_cols=175  Identities=19%  Similarity=0.302  Sum_probs=92.1

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCc----eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLRE----YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~----~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      .-|.|+..+.+..+..|..+.|.|.+...+.    +.-.|..........   ......++ .+..     ....|..-+
T Consensus        23 ~l~~~~~~p~~~yii~~~p~~l~c~a~~a~~i~~kc~~~wv~~~~~~~~~---~~d~tsg~-~~~~-----~si~Isr~~   93 (909)
T KOG1480|consen   23 DLPHFTTEPKSAYIIKNKPLRLQCKANPATQIRFKCNSEWVHQSRHEKLE---GTDETSGL-GVRE-----VSIDISRQQ   93 (909)
T ss_pred             CcceeeecCCccceecCCCccceecCCcccccccccChhhhcCccceeee---ccCcccce-eEEe-----eeeeeehhh
Confidence            4567888899999999999999999865433    223455422111000   00011111 1111     134444444


Q ss_pred             CCCCe---EEEEEEec--C-C-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCcee
Q psy15734         96 ETDRG---WYMCQINT--V-P-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAI  167 (314)
Q Consensus        96 ~~d~G---~Y~C~~~~--~-~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~  167 (314)
                      .++.+   .|.|+-.-  . + ..+....+++...-..... .+.-..+..+....+.|.. .+.|...+.|++ ++..+
T Consensus        94 v~~~~~~~d~~cQc~a~~~~g~~~s~~a~vr~ay~rk~f~~-~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k-~e~~~  171 (909)
T KOG1480|consen   94 VETSGGPEDYWCQCVAWSDDGTVKSRKATVRIAYLRKHFEQ-SPVGQEVQEETTLQLPCRPPEGDPKAEVEWLK-NEVVI  171 (909)
T ss_pred             hhcccCccceeeeeeeecCCCcchhhhHHHHHHHHHHhhcc-ChhhheecccccccccccCcccchhhhhhccc-cCCCC
Confidence            44443   48888522  1 2 1111111111111111111 1334456677788888775 466777888888 33221


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      .                                                  . .. ......+.     .|.|..++..|
T Consensus       172 ~--------------------------------------------------p-d~-n~~~~~d~-----~li~~~arlsd  194 (909)
T KOG1480|consen  172 D--------------------------------------------------P-DA-NVIRASDH-----NLIISQARLSD  194 (909)
T ss_pred             C--------------------------------------------------c-cc-cchhhhcC-----Cccccchhhhh
Confidence            1                                                  1 00 00111122     78899999999


Q ss_pred             CeEEEEEEeeCCCCc
Q psy15734        248 FGSYRCVAVNALGET  262 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~  262 (314)
                      .|+|+|+|.|-.+..
T Consensus       195 ~~nytc~a~ni~~~r  209 (909)
T KOG1480|consen  195 SGNYTCEATNIVAKR  209 (909)
T ss_pred             cccceeeeehhhccc
Confidence            999999999987654

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=96.97  E-value=0.0092  Score=39.77  Aligned_cols=67  Identities=13%  Similarity=0.225  Sum_probs=38.2

Q ss_pred             EcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeeee--eecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         34 TVGKEALMACVVENL--REYKVAWVKMITQTILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..|...+|.|.+.+.  +...+.|.+++ +.+.......  ...+..+.+..      .|.   +...+...|+|.+...
T Consensus        13 ~~g~~~~L~C~a~gFyP~~i~v~W~~dg-~~~~~~~~~~~~p~~d~tyq~~s------~l~---~~~~~~~~ysC~V~H~   82 (93)
T cd05770          13 ENGKPNVLNCYVTGFHPPDIEIRLLKNG-VKIPKVEQSDLSFSKDWTFYLLK------STE---FTPTKGDEYACRVRHN   82 (93)
T ss_pred             cCCCceEEEEEEEEEeCCCCEEEEEECC-EECCCcEECcEEECCCCCEEEEE------EEE---ECCCCCCeEEEEEEEC
Confidence            346677999999884  35789999954 4332111111  11223333221      343   4456777899999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        83 ~   83 (93)
T cd05770          83 S   83 (93)
T ss_pred             C
Confidence            3

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=96.96  E-value=0.014  Score=38.96  Aligned_cols=66  Identities=17%  Similarity=0.314  Sum_probs=38.0

Q ss_pred             cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe---eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSI---HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .|+..+|.|.+.+. | ...+.|.+++ ..+...   .......++.+.+..      .|.+.   +.+...|+|.+...
T Consensus        14 ~~~~~tL~C~a~gFyP~~I~v~W~~~g-~~~~~~~~~~~~~~~~Dgty~~~s------~L~v~---~~~~~~ytC~V~H~   83 (94)
T cd05767          14 LGEPNTLICFVDNFFPPVLNVTWLKNG-VPVTDGVSETRYYPRQDLSFQKFS------YLNFT---PEEGDIYSCIVEHW   83 (94)
T ss_pred             CCCCeEEEEEEEEEECCcCEEEEEECC-eEccCceEEeeeEeCCCCcEEEEE------EEEEE---CCCCCeEEEEEEeC
Confidence            46668999999884 3 4789999954 332110   011112233333322      45544   35667899999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        84 ~   84 (94)
T cd05767          84 G   84 (94)
T ss_pred             C
Confidence            3

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd07692 Ig_CD3_epsilon Immunoglobulin (Ig)-like domain of CD3 epsilon chain

Probab=96.93  E-value=0.0025  Score=38.64  Aligned_cols=50  Identities=14%  Similarity=0.298  Sum_probs=32.9

Q ss_pred             EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         34 TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ..|.+|+|+|...+.   .+.|.+++.. +        ..+..           .+.+.+.. +++|.|.|.+.
T Consensus         5 isGTtVtlTCP~~~~---~i~W~~n~~~-~--------~g~~~-----------~~~~~~~~-e~~G~Y~C~~~   54 (65)
T cd07692           5 ISGTTVTVTCPLSGD---DIKWKKNDQV-S--------QGSDE-----------KYLSLNHF-SSSGYYHCTAD   54 (65)
T ss_pred             EeccEEEEECCCCCC---CceEEeCCcc-C--------CCCCc-----------eEEeeccC-CCCceEEEEeC
Confidence            468999999986532   3999996521 1        11111           34455555 89999999984

Ig_CD3_epsilon; immunoglobulin (Ig)-like domain of CD3 epsilon chain. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>cd07704 Ig2_Nectin-3-4_like Second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3), nectin-4 (poliovirus receptor related protein 4) and similar proteins

Probab=96.93  E-value=0.02  Score=38.31  Aligned_cols=73  Identities=14%  Similarity=0.163  Sum_probs=47.2

Q ss_pred             cceEEEcCCcEEE-EEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         29 ANVTATVGKEALM-ACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        29 ~~~~v~~g~~~~l-~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ..+.+.+|+.+.+ .|.+. +.|...|.|+.+.....  ........++.+.+..      .|.+...+..|.-.++|.+
T Consensus         9 ~~~~~~~g~~~~vA~C~sa~gkPaa~IsW~~~~~G~~--~~~~~~~~ngT~TV~S------~~~l~p~r~d~G~~vtC~V   80 (97)
T cd07704           9 PSLLIDGGNGTTLAACCAAEGRPAADVTWETNVYGTS--ESHSQEHPNGTTTVTS------EYIWVPSRHANGHPLTCVV   80 (97)
T ss_pred             CeeEeecCcceeEEEEEccCCccCCEeEEeCCCCCcc--ceeeecCCCCCEEEEE------EEEEEeCHHHCCcEEEEEE
Confidence            3566788899999 99984 57889999997532211  1111122334444443      5777666666777899999


Q ss_pred             ecC
Q psy15734        107 NTV  109 (314)
Q Consensus       107 ~~~  109 (314)
                      .+.
T Consensus        81 ~H~   83 (97)
T cd07704          81 SHP   83 (97)
T ss_pred             eCc
Confidence            754

Ig2_Nectin-3-4_like: domain similar to the second immunoglobulin (Ig) domain of nectin-3 (also known as poliovirus receptor related protein 3) and nectin-4 (poliovirus receptor related protein 4). Nectin-3 and nectin-4 belong to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development. Nect

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=96.91  E-value=0.014  Score=39.20  Aligned_cols=34  Identities=24%  Similarity=0.267  Sum_probs=26.5

Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYV  270 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V  270 (314)
                      .|.|+.++.+|+|.|.-++++..|.. ...+.+.|
T Consensus        72 aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~FqVsV  106 (108)
T PF11465_consen   72 ALLIKAAQPQDSGLYCLEVTNESGKVCTKNFQVSV  106 (108)
T ss_dssp             EEEESS-SGGG-EEEEEEEEETTSCEEEEEEEEEE
T ss_pred             eEEEeecCcccCceEEEEEEcCCCcEEEEEEEEEe
Confidence            99999999999999999999998877 34444444

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>PHA02633 hypothetical protein; Provisional

Probab=96.89  E-value=0.0027  Score=37.79  Aligned_cols=36  Identities=19%  Similarity=0.269  Sum_probs=26.8

Q ss_pred             EEEEeeecCCCCeEEEEEEecCC-CcceeEEEEEEeC
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVP  123 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~  123 (314)
                      .|+|-++..+|+|.|.|.+++.. ....++.|.|...
T Consensus        19 nLwilpa~~sDSGiYiC~~rn~t~c~~~si~l~V~~~   55 (63)
T PHA02633         19 NMLILNPTQSDSGIYMCITKNETYSDMMKFDLCICLR   55 (63)
T ss_pred             cEEEeccccccCcEEEEEEcCCCeeEEEEEEEEEeec
Confidence            69999999999999999997653 3344455555543

>cd07697 IgC_TCR_gamma T cell receptor (TCR) gamma chain constant immunoglobulin domain

Probab=96.89  E-value=0.014  Score=39.09  Aligned_cols=27  Identities=19%  Similarity=0.393  Sum_probs=20.4

Q ss_pred             EEcCCcEEEEEEecCC--CceEEEEEEcC
Q psy15734         33 ATVGKEALMACVVENL--REYKVAWVKMI   59 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~--~~~~v~W~~~~   59 (314)
                      ...+..++|.|.+.+.  +...+.|.+++
T Consensus        13 ~~~~~~~tL~C~a~gFyP~~I~v~W~kng   41 (96)
T cd07697          13 IEKQGQGIYLCLLENFFPDVIQVHWREGN   41 (96)
T ss_pred             HccCCCEEEEEEEEEEeCCCeEEEEEECC
Confidence            3345779999999884  35789999954

IgC_TCR_gamma; immunoglobulin (Ig) constant (C) domain of the gamma chain of gamma-delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha-beta TCRs but a small subset contain gamma-delta TCRs. Alpha-beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma-delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma-delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds.

>cd07703 Ig2_Nectin-2_like Second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112) and similar proteins

Probab=96.89  E-value=0.015  Score=38.93  Aligned_cols=65  Identities=12%  Similarity=0.206  Sum_probs=39.6

Q ss_pred             CcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         37 KEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        37 ~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..+.+.|.+. +.|...|.|+++.......  ......++.+.+..      .|.+......|...|+|++.+.
T Consensus        16 ~~~va~C~s~~gkPaa~IsW~~~~~g~~~~--~~~~~~~gt~tv~S------~l~~~P~~~d~Gk~ltC~v~h~   81 (95)
T cd07703          16 PVPVAKCVSANGRPPARISWSSTLGGNANT--TSKENGDGTVTVTS------EYSLVPTPEANGKEVTCKVEHE   81 (95)
T ss_pred             ccEEEEEEcCCCCCCcEEEEEcCCCCCeeE--EEEeCCCCCEEEEE------EEEEecCHHHCCCEEEEEEeCc
Confidence            3578899885 5788999999852211111  11112233344332      5777666666666899999764

Ig2_Nectin-2_like: domain similar to the second immunoglobulin (Ig) domain of nectin-2 (also known as poliovirus receptor related protein 2 or CD112). Nectin-2 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectin-2 and nectin-3 localize at Sertoli-spermatid junctions where they form heterophilic trans-interactions between the cells that are essential for the formation and maintenance of the junctions and for spermatid development.

>PHA03042 CD47-like protein; Provisional

Probab=96.75  E-value=0.011  Score=46.60  Aligned_cols=71  Identities=15%  Similarity=0.303  Sum_probs=47.6

Q ss_pred             cCccEEEEEEEeec-----CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        189 VSQTVELHCHTEAF-----PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-----p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      -.+++.+.|.++..     ..-.+.|.+++......... ..          ++|.+... ..-.|+|+|+|.+......
T Consensus        30 CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~~~If~~n~t-n~----------aSL~~~f~-~~l~GNYTCEv~~l~n~gk   97 (286)
T PHA03042         30 CNKTIVIVCNLNLLIYYNISNIHINWKFNNKVIFKKNNT-NT----------SSLKFNFS-KNLSGNYTCEAINKFNKIK   97 (286)
T ss_pred             cCceEEEEeecCChhhcCccceEEEEEeCCeeEEEecCC-cc----------eEEEEecc-ccCCCceeEEEeecccCcc
Confidence            47789999999763     45578999976554443332 11          26666543 3448999999998776666


Q ss_pred             eEEEEEEE
Q psy15734        264 GFIKVYVN  271 (314)
Q Consensus       264 ~~~~l~V~  271 (314)
                      ..+.|+-.
T Consensus        98 ~~IeLk~~  105 (286)
T PHA03042         98 NTIELQYV  105 (286)
T ss_pred             EEEEEEEE
Confidence            66666443

>cd04985 IgC_CH1 CH1 domain (first constant Ig domain of the heavy chain) in immunoglobulin

Probab=96.71  E-value=0.018  Score=38.61  Aligned_cols=69  Identities=7%  Similarity=0.195  Sum_probs=38.2

Q ss_pred             cCCcEEEEEEecCC--CceEEEEEEcCceeEEEe--eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         35 VGKEALMACVVENL--REYKVAWVKMITQTILSI--HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        35 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      .++.++|.|.+.+.  ....|.|.+++.. ....  .......++.+....      .|.+..-.-.....|+|.+.+.+
T Consensus        15 ~~~~~~L~C~a~gFyP~~i~vtW~k~g~~-~~~~~~~~~~~~~dgty~~~s------~L~v~~~~w~~~~~ytC~V~H~~   87 (95)
T cd04985          15 SSDSVTLGCLATGFLPEPVTFTWNSGSNS-TSGVKTYPAVLQSGGLYTASS------QLTVPASEWKGKESFYCKVEHPS   87 (95)
T ss_pred             CCCcEEEEEEEeeEECCCcEEEEeECCEE-CCCcEECCCEeCCCCCEEEEE------EEEEeHHHcCCCCcEEEEEEeCC
Confidence            45679999999884  3478999995432 1110  001111133343322      45555433223567999997643

IgC_CH1: The first immunoglobulin constant domain (IgC), of immunoglobulin (Ig) heavy chains. This domain is found on the Fab antigen-binding fragment. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. There are two types of light chains: kappa and lambda; each composed of a constant domain and a variable domain. There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are modular proteins, in which the variable and constant domains have clear, conserved sequence patterns.

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=96.67  E-value=0.013  Score=39.09  Aligned_cols=71  Identities=8%  Similarity=0.124  Sum_probs=40.2

Q ss_pred             eecCccEEEEEEEee-cCC--ceeEEecCCCeeeecCCceeeeEee-CCeeeEEEEEEeecCCCCCe-EEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEA-FPA--SLNYWTNEKGDMIITGDDYEDSRLI-NGYSCHMTLKIRSILSHQFG-SYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g-~p~--p~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d~G-~Y~C~a~n~~g  260 (314)
                      +.+|..+++.|.+.+ .|.  ..+.|++++ ..+ ....+.-.... ......+.+.+.. ..+|.| +|+|.|.-..+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~-~~l-~~~~f~~~~~~ks~~~~~~~vtftp-treD~g~~fsC~A~L~l~   87 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE-TLL-PSKSFLEDMDKKSLETKSLEVTFTP-TIEDIGKVLVCRAKLHID   87 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCc-cee-cccccccccccCCCCCcceeEEEec-chhhCCcEEEEEEEEeec
Confidence            478999999999975 454  577898743 222 22211110000 0001123555555 367777 99999976544

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>cd07691 Ig_CD3_gamma_delta Immunoglobulin (Ig)-like domain of CD3 gamma and delta chains

Probab=96.47  E-value=0.016  Score=35.50  Aligned_cols=60  Identities=20%  Similarity=0.347  Sum_probs=39.0

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCccee
Q psy15734         36 GKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQK  115 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~  115 (314)
                      .+.|.|.|...    ..+.|++ +......        .           ..+|.+-+....-.|.|.|.+.+   ....
T Consensus         6 ~~~V~L~C~~~----tsi~W~k-G~~~~~~--------~-----------~~tlnLGs~~~DPRG~Y~C~~s~---~~~~   58 (69)
T cd07691           6 EGKVFLKCNGA----TNITWKK-GKEILEV--------S-----------NTLLDLGSRINDPRGTYSCKESE---PNKE   58 (69)
T ss_pred             CceEEEEecCC----CcEEEec-Ccccccc--------c-----------ccEEeccCcccCCCcceEecCcc---CCCc
Confidence            45799999762    4699999 5432110        0           01677788888889999998754   2344


Q ss_pred             EEEEEEe
Q psy15734        116 GYLQVVV  122 (314)
Q Consensus       116 ~~l~v~~  122 (314)
                      ..|.|+.
T Consensus        59 ~~LQVyY   65 (69)
T cd07691          59 KTLQVYY   65 (69)
T ss_pred             EEEEEEE
Confidence            5566654

Ig_CD3_gamma_delta; immunoglobulin (Ig)-like domain of CD3 gamma and delta chains. CD3 is a T cell surface receptor that is associated with alpha/beta T cell receptors (TCRs). The CD3 complex consists of one gamma, one delta, two epsilon, and two zeta chains. The CD3 subunits form heterodimers as gamma/epsilon, delta/epsilon, and zeta/zeta. The gamma, delta, and epsilon chains each contain an extracellular Ig domain, whereas the extracellular domains of the zeta chains are very small and have unknown structure. The CD3 domain participates in intracellular signalling once the TCR has bound an MHC/antigen complex.

>PF08204 V-set_CD47: CD47 immunoglobulin-like domain; InterPro: IPR013270 This family represents the CD47 leukocyte antigen V-set like Ig domain [, ]

Probab=96.43  E-value=0.0057  Score=43.05  Aligned_cols=75  Identities=15%  Similarity=0.228  Sum_probs=37.2

Q ss_pred             EEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeee---ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         33 ATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVV---TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        33 v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..-.++|.|+|.+..     .+...|.|..++.......+....   ....+..+..-..+..+|.+...+.- .|+|+|
T Consensus        24 t~CN~tV~IPC~v~n~~~~ni~~m~VkWk~~~~~If~~dg~~~~~~~~~f~sa~i~~l~kG~aSL~~~~~~a~-~GnYTC  102 (130)
T PF08204_consen   24 TVCNDTVVIPCFVNNLEANNISEMYVKWKFKNKDIFIFDGTNNKSTSDNFPSAKISELLKGNASLKMDKSDAV-EGNYTC  102 (130)
T ss_dssp             -TT-SEEEE--BBSS---SSGGGEEEEEEETTEEEEEEETTTTEEEEGGGTT-BEGGGGGTB--EEEEHHHHH--EEEEE
T ss_pred             EecCCCEEEEeEeccccccccceEEEEEEECCeEEEEEcCccceecccCccccchhHhhCCCEEEEEcchhcc-ccceEE
Confidence            345789999999954     245789999955432222211110   01112222111112336888886655 899999


Q ss_pred             EEec
Q psy15734        105 QINT  108 (314)
Q Consensus       105 ~~~~  108 (314)
                      .+..
T Consensus       103 eVt~  106 (130)
T PF08204_consen  103 EVTE  106 (130)
T ss_dssp             EEEE
T ss_pred             EEEe
Confidence            9954

; PDB: 2VSC_B 2JJS_D 2JJT_C.

>KOG4597|consensus

Probab=96.24  E-value=0.0066  Score=51.53  Aligned_cols=90  Identities=11%  Similarity=-0.041  Sum_probs=65.2

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecC--CC-eeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNE--KG-DMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~--~~-~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      .-+....+..+++..++|-+.|.|.+.|+|.+-  ++ ...+. ....   .++- -+.+..|.|-+....|+|.|+|.+
T Consensus       201 ~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~-~nq~---~e~p~vtstcql~ic~ewq~~a~w~tCs~  276 (560)
T KOG4597|consen  201 DCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMR-PNQT---VENPVVTSTCQLVICNEWQADAGWYTCSA  276 (560)
T ss_pred             cCcchhhcccchhhcccccccCCcCceeeeehhhccccceeec-Cccc---cCCcceeeeeeEEEcchhhcCCCceeecc
Confidence            344555678899999999999999999999652  12 22222 1111   1111 223458999999999999999999


Q ss_pred             eeCCCCceeEEEEEEEec
Q psy15734        256 VNALGETDGFIKVYVNLV  273 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~~  273 (314)
                      .|..|...+.+.+.+...
T Consensus       277 rcg~g~~~rdv~c~s~~g  294 (560)
T KOG4597|consen  277 RCGAGFLRRDVPCSSVKG  294 (560)
T ss_pred             ccccceeeccceeeeecc
Confidence            999999999988877543

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=96.24  E-value=0.0082  Score=47.16  Aligned_cols=50  Identities=18%  Similarity=0.268  Sum_probs=39.0

Q ss_pred             CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       203 p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..|.+.|..+++..+......  ...+.|     .|.+.+....++|.|+|..+-..
T Consensus        11 iDP~y~W~GP~g~~l~gn~~~--nIT~TG-----~L~~~~F~esmSG~YTCtLsYk~   60 (271)
T PF07354_consen   11 IDPTYLWTGPNGKPLSGNSYV--NITETG-----KLMFKNFQESMSGSYTCTLSYKP   60 (271)
T ss_pred             CCCceEEECCCCcccCCCCeE--EEccCc-----eEEeeccccccCCceEEEEEEEe
Confidence            468999999877766544433  344566     99999999999999999987654

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PHA03269 envelope glycoprotein C; Provisional

Probab=95.94  E-value=0.99  Score=39.15  Aligned_cols=173  Identities=15%  Similarity=0.195  Sum_probs=85.4

Q ss_pred             eeeccCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCcee
Q psy15734         13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRS   86 (314)
Q Consensus        13 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~   86 (314)
                      ...+....+|.+...  ...+.+|+...-.|.+..+ |  ...+.|+++++ .+.....   .....++.++..      
T Consensus       321 ~VtV~~yr~PsVsV~--p~PVL~Ge~YkAtC~vA~YYPp~SvrlrWf~ng~-~V~~~~it~t~~~~~dGlFSrV------  391 (566)
T PHA03269        321 HITVMSYKRPNITVI--GDPVLLGNPYAAYCKVNKYYPPHSVIVKWTSNFG-NIGKNFITDAIKENADGLFSSV------  391 (566)
T ss_pred             EEEEEEecCCCcccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCc-ccCccccccceeecCCCceEEE------
Confidence            333445566654433  3457889999999999663 3  36899999643 3321100   001112222211      


Q ss_pred             EEEEEeeecCCC--CeEEEEEEec-C-CCc----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--Cc
Q psy15734         87 WFLHLRDVQETD--RGWYMCQINT-V-PMT----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PY  156 (314)
Q Consensus        87 ~~L~i~~~~~~d--~G~Y~C~~~~-~-~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~  156 (314)
                      ++|.+......|  .-+.+|.+.- . +..    +..+.-.|+.+|.+..       ....|.-   .|.+...|.  ..
T Consensus       392 STLtlp~~~~~d~~PPsLrCeV~W~RDsVS~tRfnAaatP~VY~~PtISm-------~FedG~A---VCtA~CVP~~~V~  461 (566)
T PHA03269        392 SALHIPAQKNADYPPPAIQCNVLWIRDGVSHMKYSAAVTPDVYPFPNVSI-------EIIDGHI---VCLAKCVPRGVVH  461 (566)
T ss_pred             EEEeccCccccCCCCCCceEEEEEccCCchheecccccCCccccCCeEEE-------EEeCCEE---EEecccccCCCce
Confidence            145443322222  2356999832 2 111    1222334444554432       2333433   477777665  37


Q ss_pred             eEEEcCCCceeecCCeeC------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734        157 VAWRREDGKAINYNGELV------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       157 ~~W~~~~~~~~~~~~~~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  204 (314)
                      +.|.-+|+.....+....      |-...+.+..-.-.....+.-+|...|+|.
T Consensus       462 l~WlVgD~p~~~~~t~itG~C~ehPGLVNLRS~~pLS~~dgpveYTCrL~GYP~  515 (566)
T PHA03269        462 FNWWINDIPIEHENSEILGVCDNNKRFVNLQSSCDTSELDGPITYSCHLDGYPK  515 (566)
T ss_pred             EEEEecCCCCCCccceeeccCCCCCCceeecccccccccCCceeEEEEEeecCC
Confidence            999985544212111111      222222221111123356899999999986

>PF07354 Sp38: Zona-pellucida-binding protein (Sp38); InterPro: IPR010857 This family contains a number of zona-pellucida-binding proteins that seem to be restricted to mammals

Probab=95.75  E-value=0.016  Score=45.59  Aligned_cols=48  Identities=23%  Similarity=0.349  Sum_probs=36.1

Q ss_pred             CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         49 REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        49 ~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      -+|.+.|...++..        ...+.++.++..+    .|.+.+.+.+++|.|+|....
T Consensus        11 iDP~y~W~GP~g~~--------l~gn~~~nIT~TG----~L~~~~F~esmSG~YTCtLsY   58 (271)
T PF07354_consen   11 IDPTYLWTGPNGKP--------LSGNSYVNITETG----KLMFKNFQESMSGSYTCTLSY   58 (271)
T ss_pred             CCCceEEECCCCcc--------cCCCCeEEEccCc----eEEeeccccccCCceEEEEEE
Confidence            45789999866553        2344566666543    799999999999999999853

These are sperm proteins that bind to the 90 kDa family of zona pellucida glycoproteins in a calcium-dependent manner []. These represent some of the specific molecules that mediate the first steps of gamete interaction, allowing fertilisation to occur [].; GO: 0007339 binding of sperm to zona pellucida, 0005576 extracellular region

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=95.68  E-value=0.22  Score=32.02  Aligned_cols=34  Identities=21%  Similarity=0.304  Sum_probs=23.7

Q ss_pred             EEEEeecCCCCCeEEEEEE-eeCCCCceeEEEEEE
Q psy15734        237 TLKIRSILSHQFGSYRCVA-VNALGETDGFIKVYV  270 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a-~n~~g~~~~~~~l~V  270 (314)
                      .+.......+|+|.+.|.| .+........+.|.|
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~~~~~k~~~s~~~i~v   78 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTASDNEPKERESKIEILV   78 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEEECTTEEEEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEcCCceEEEEEEEEEEc
Confidence            5667788889999999999 555444444444443

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>cd05890 Ig2_Nectin-1_like Second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111) and similar proteins

Probab=95.62  E-value=0.087  Score=34.61  Aligned_cols=73  Identities=8%  Similarity=0.187  Sum_probs=48.3

Q ss_pred             cEEEEEE-EeecCCceeEEecCC-CeeeecCCceeee-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        192 TVELHCH-TEAFPASLNYWTNEK-GDMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       192 ~~~l~C~-~~g~p~p~~~W~~~~-~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      .+.-.|. +.|.|++.|.|.-+= |..     ..... ..++..+..+.+.+-.....|.-..+|.+......-..++.|
T Consensus        22 v~VA~CiSa~GrPpa~ItW~t~l~G~~-----etq~~~~~~GT~TV~S~y~lVPs~~~~gk~lTCvV~h~~~~~~~~~~L   96 (98)
T cd05890          22 MLVATCVSANGKPPSVVRWDTRLKGEA-----EFQEIRNQNGTVTVISRYRLVPSREAHKQKLTCIVNYRNDRFTDSVTL   96 (98)
T ss_pred             EEEEEEEcCCCcCCcEeEEEccCCCce-----eeeeeCCCCCCEEEEEEEEEeECHHHcCCEeEEEEEeccccccccEEe
Confidence            4566797 689999999998541 111     11111 122235667788888888889889999998875544555555


Q ss_pred             E
Q psy15734        269 Y  269 (314)
Q Consensus       269 ~  269 (314)
                      .
T Consensus        97 ~   97 (98)
T cd05890          97 N   97 (98)
T ss_pred             c
Confidence            4

Ig2_Nectin-1_like: domain similar to the second immunoglobulin (Ig) domain of nectin-1 (also known as poliovirus receptor related protein 1, or as CD111). Nectin-1 belongs to the nectin family comprised of four transmembrane glycoproteins (nectins-1 through 4). Nectins are synaptic cell adhesion molecules (CAMs) which facilitate adhesion and signaling at various intracellular junctions. Nectins form homophilic cis-dimers, followed by homophilic and heterophilic trans-dimers involved in cell-cell adhesion. Nectins also heterophilically trans-interact with other CAMs such as nectin-like molecules (necls); nectin-1 for example, has been shown to trans-interact with necl-1. Nectins also interact with various other proteins, including the actin filament (F-actin)-binding protein, afadin. Mutation in the human nectin-1 gene is associ

>cd07689 Ig2_VCAM-1 Second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106) and intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=95.51  E-value=0.085  Score=35.22  Aligned_cols=27  Identities=19%  Similarity=0.229  Sum_probs=21.4

Q ss_pred             EEcCCcEEEEEEecC-CCc--eEEEEEEcC
Q psy15734         33 ATVGKEALMACVVEN-LRE--YKVAWVKMI   59 (314)
Q Consensus        33 v~~g~~~~l~C~~~~-~~~--~~v~W~~~~   59 (314)
                      +.+|..+++.|.+.+ +|.  ..+.|++.+
T Consensus        12 l~~G~~vtv~C~v~~v~P~~~l~v~LlkG~   41 (99)
T cd07689          12 LEEGKPVTVKCEVPDVYPFDRLEIELLKGE   41 (99)
T ss_pred             ccCCceEEEEEEecCcccCCceEEEEecCc
Confidence            478999999999975 343  789999843

Ig2_ VCAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of vascular endothelial cell adhesion molecule-1 (VCAM-1, CD106). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. The interaction of VCAM-1 binding to the beta1 integrin very late antigen (VLA-4) expressed by lymphocytes and monocytes mediates the adhesion of leucocytes to blood vessel walls, and regulates migration across the endothelium. During metastasis, some circulating cancer cells extravasate to a secondary site by a similar process. VCAM-1 may be involved in organ targeted tumor metastasis and may also act as host receptors for viruses and parasites. VCAM-1 contains seven Ig domains.

>PF11465 Receptor_2B4: Natural killer cell receptor 2B4; InterPro: IPR024303 2B4 is a transmembrane receptor which is expressed primarily on natural killer (NK) cells

Probab=95.42  E-value=0.28  Score=33.06  Aligned_cols=40  Identities=18%  Similarity=0.223  Sum_probs=26.9

Q ss_pred             cCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCcceeEE
Q psy15734         75 KRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY  117 (314)
Q Consensus        75 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~  117 (314)
                      .|+.+...+.   +|.|..+++.|+|.|...+.+..+......
T Consensus        62 ~r~~F~~enl---aLlIkaAq~qDSG~Y~LEvT~~sG~V~~~~  101 (108)
T PF11465_consen   62 NRFNFTSENL---ALLIKAAQPQDSGLYCLEVTNESGKVCTKN  101 (108)
T ss_dssp             HHEEEETTTT---EEEESS-SGGG-EEEEEEEEETTSCEEEEE
T ss_pred             ceEeeeccCc---eEEEeecCcccCceEEEEEEcCCCcEEEEE
Confidence            4666655443   899999999999999999976544433333

It plays a role in activating NK-mediated cytotoxicity through its interaction with CD48 on target cells in a subset of CD8 T cells []. The structure of 2B4 consists of an immunoglobulin variable domain fold and contains two beta-sheets. One of the beta-sheets, the six-stranded sheet, contains structural features that may have a role in ligand recognition and receptor function []. This entry represents the 2B4 immunoglobulin domain.; GO: 0005488 binding; PDB: 2PTU_D 2PTT_B 1Z2K_A.

>TIGR00864 PCC polycystin cation channel protein

Probab=95.14  E-value=5.7  Score=42.63  Aligned_cols=245  Identities=11%  Similarity=0.003  Sum_probs=134.1

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ......+..|+.+.|.-.........+.|...++....       ..+..+               .-+-...|.|.-.+
T Consensus      1703 ~aS~~~aavn~~V~fs~~lt~GS~vty~W~~gdG~s~~-------~s~p~~---------------tHtf~~~G~y~VtV 1760 (2740)
T TIGR00864      1703 QASDNPAAVNALINLSAELAEGSGLQYRWFLEEGDDLE-------TSEPFM---------------SHSFPSAGLHLVTM 1760 (2740)
T ss_pred             eccCCcccCCCeEEEEEEecCCCCcEEEEEECCCCCcc-------cCCCce---------------EEEccCCceEEEEE
Confidence            33444566788899887776667789999986643110       011111               11224457777775


Q ss_pred             --ecC-CCcceeEEEEEEeCCceeeecCc---ceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------
Q psy15734        107 --NTV-PMTSQKGYLQVVVPPRILLDRTS---TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------  174 (314)
Q Consensus       107 --~~~-~~~~~~~~l~v~~~p~~~~~~~~---~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------  174 (314)
                        .|. +.......+.|+.+..-......   ....+..|..+.|.-.+.....-...|...++....-.....      
T Consensus      1761 ta~N~vss~~~s~~V~VqepV~GL~i~~~~~~~~~~~~ag~~v~F~a~vstGsnVsw~W~f~~g~s~~gk~v~~Tf~~aG 1840 (2740)
T TIGR00864      1761 KAFNELGSANASEEVDVQEPISGLKIRAADAGEQNFFAADSSVCFQGELATGTNVSWCWAIDGGSSKMGKHACMTFPDAG 1840 (2740)
T ss_pred             EEEccccccceeEEEEEEeccccceEecCCCCcccceecCcEEEEEEEccCCCeeEEEEEeCCCCccccceeEEecCCCe
Confidence              333 44445566777765542222111   111345577777766643222336777764443221111000      


Q ss_pred             -------------------------CC-eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe
Q psy15734        175 -------------------------PP-MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL  228 (314)
Q Consensus       175 -------------------------~p-~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~  228 (314)
                                               +. .+........+..|+.++|.+.+...+...+.|..+++..........+.  
T Consensus      1841 ~ytV~L~AsN~vs~~~~s~~~~VQe~I~~L~L~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~t~~~t~~-- 1918 (2740)
T TIGR00864      1841 TFAIRLNASNAVSGKSASREFFAEEPIFGLELKASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVLQPGPRFS-- 1918 (2740)
T ss_pred             EEEEEEEEEcccCcceeeeeEEEEEecceEEEecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceeecCCCeEE--
Confidence                                     11 12222344467789999999998887788889998766544321111111  


Q ss_pred             eCCeeeEEEEEEeecCCCCCeEE--EEEEeeCCCCceeEEEEEEEecCCCeeEEEEc-----cccccEeEEEEEeeccCC
Q psy15734        229 INGYSCHMTLKIRSILSHQFGSY--RCVAVNALGETDGFIKVYVNLVDGDIFQIRKM-----SRLHMGAYLCIASNGVVP  301 (314)
Q Consensus       229 ~~~~~~~s~L~i~~~~~~d~G~Y--~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~-----~~~~~g~~~C~a~~~~~~  301 (314)
                                  .  ...-.|.|  +-.|.|..+.....+.+.|..+- ..+.|...     ..+....|+-.....-+-
T Consensus      1919 ------------H--sY~~~G~Y~VtV~A~N~Vs~~~a~~~V~Vle~V-~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V 1983 (2740)
T TIGR00864      1919 ------------H--SFPRVDDHMVNLRAKNEVSCAQANLHIEVLEAV-RGLQIPDCCAAGIATGEEKNFTANVQRGKPV 1983 (2740)
T ss_pred             ------------e--ecCCCCcEEEEEEEEeccceeeeeEEEEEEEec-cceEecCCcccceecCceEEEEEEEecCCce
Confidence                        0  11123444  44667888888888877776552 33544332     334445577777766666


Q ss_pred             CccceEEEE
Q psy15734        302 SVSHRIMVT  310 (314)
Q Consensus       302 ~~~w~v~l~  310 (314)
                      .+.|.+.|.
T Consensus      1984 ~f~W~f~~~ 1992 (2740)
T TIGR00864      1984 AFAWTFDLH 1992 (2740)
T ss_pred             EEEEEeeec
Confidence            788887765

Note: this model has been restricted to the amino half because for technical reasons.

>PHA03270 envelope glycoprotein C; Provisional

Probab=95.05  E-value=1.6  Score=37.28  Aligned_cols=169  Identities=15%  Similarity=0.200  Sum_probs=79.7

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCce-eEEEEEe
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR-SWFLHLR   92 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~L~i~   92 (314)
                      ....+|.+...  ...+.+|+...-.|.+..+ |  ...+.||+++.. +......    +.......++.. ..+|.+.
T Consensus       217 ~~yr~Psvsv~--~~PvL~Ge~Y~AtC~va~YYPp~Sv~lrWf~ng~~-V~~~~~i----~~~~~~~~dGfs~vStvtse  289 (466)
T PHA03270        217 RMFRRPSLSIR--PHAVLEGEPFGATCVAANYYPGDRAAFRWFEGGDE-VFAPERV----RTRVDAQRDGFSATSTLTSE  289 (466)
T ss_pred             EEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCcc-ccCccee----eeeeEecCCCeeEEEEEecc
Confidence            34455664433  3346789999999999663 3  368999996543 2110000    001111111100 1134333


Q ss_pred             eecCC-CCeEEEEEEec-C-CCc----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCC
Q psy15734         93 DVQET-DRGWYMCQINT-V-PMT----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDG  164 (314)
Q Consensus        93 ~~~~~-d~G~Y~C~~~~-~-~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~  164 (314)
                      ..... ..=+.+|.+.- . ...    +....-.|+.+|.+..       ....|.-   .|.+...|. ..+.|.-.|+
T Consensus       290 a~~~~~~PPsLrC~v~W~rd~vS~sR~nAa~~P~VY~~P~Isv-------~F~dG~A---VCtA~CVPegV~l~W~V~D~  359 (466)
T PHA03270        290 ARAGLAPPRNLTCEFTWHRDSVSFSRRNATGAPTVLPRPTIEM-------EFGGDEA---VCTAACVPEGVTLAWLLGAD  359 (466)
T ss_pred             ccccCCCCCCceEEEEEccCCccceeecccccCccccCCeEEE-------EEeCCEE---EEeccccCCCCEEEEEecCC
Confidence            32211 11368999832 1 111    2222334444444432       2333333   476666553 3899998554


Q ss_pred             ceeecCCeeC-------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734        165 KAINYNGELV-------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       165 ~~~~~~~~~~-------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  204 (314)
                      ..-..+....       |-...+.+. ..+.. +.+.-+|...|+|.
T Consensus       360 ~~pa~~~~v~~G~C~~~PGlvNlrS~-~plSd-~~~eYTCrl~GYP~  404 (466)
T PHA03270        360 PAPAEKAAVAGGPCPGRPGLARVRSA-LPLSR-EHSEYTCRLVGYPA  404 (466)
T ss_pred             CCCCccceeecccCCCCCCceeeecc-ccccc-CCceEEEEEeecCC
Confidence            3311111110       222222221 12222 35799999999986

>PF02480 Herpes_gE: Alphaherpesvirus glycoprotein E; InterPro: IPR003404 Glycoprotein E (gE) of Alphaherpesvirus forms a complex with glycoprotein I (gI), functioning as an immunoglobulin G (IgG) Fc binding protein

Probab=95.03  E-value=0.05  Score=47.37  Aligned_cols=146  Identities=14%  Similarity=0.174  Sum_probs=44.4

Q ss_pred             EEEEeeecCCCCeEEEEEEecCCCccee--EEEEEEeCCcee--------e----------ecCcceeEEecCceEEEEE
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVPMTSQK--GYLQVVVPPRIL--------L----------DRTSTDVVVREGTEVTLEC  147 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~~--~~l~v~~~p~~~--------~----------~~~~~~~~~~~g~~~~l~C  147 (314)
                      .|.|.+++..|+|.|+-...+.......  +.|.|..+....        .          ...........|+++.+.-
T Consensus        90 ~l~i~~a~~~~~GvY~l~~~~~~~~~~~~~~~v~v~~~~~~~~~p~p~~p~~p~~~~~~~~~~~~~s~vf~~Gdtf~~~v  169 (439)
T PF02480_consen   90 GLSILNATEQDSGVYTLYVRNDSGWAHQSVVFVTVKGPAPDPRTPPPHHPIVPHRHGATFHLKNYHSHVFSPGDTFHLSV  169 (439)
T ss_dssp             --------------------------------------------------------SEEEEEE--SEEE--TT--EE---
T ss_pred             ceEEeccccccCeeEEEEecCCCCceEEEEEEEEEcCCCcCCCCCCCCCCCCCcccccEEEEeccceEEecCCCcEEEeE
Confidence            6999999999999999998654433322  344443311110        0          0112334566899888776


Q ss_pred             Eeccc--C-C---CceEEEcCCC----ceeecCCeeC--------------CCeEEcCCCcceeecCccEEEEEEEee--
Q psy15734        148 SAVGY--P-E---PYVAWRREDG----KAINYNGELV--------------PPMLTIPNQLEGAFVSQTVELHCHTEA--  201 (314)
Q Consensus       148 ~~~~~--p-~---p~~~W~~~~~----~~~~~~~~~~--------------~p~~~~~~~~~~v~~g~~~~l~C~~~g--  201 (314)
                      .....  . .   ..+.|+..+-    ..+.....-.              ...|..+  .....++......|...+  
T Consensus       170 ~l~~~~~d~~~f~~~i~W~~~~~~~~C~~~riYE~CifHP~~p~Cl~P~~~~C~f~s~--~~a~~~~~~~y~~C~~~~~~  247 (439)
T PF02480_consen  170 HLQSEAHDDPPFSLEIDWYYMPTDPSCAEMRIYEPCIFHPHAPECLHPADARCSFASP--LRAERLASRRYANCSPSGWP  247 (439)
T ss_dssp             EEEEEESSS--EEEEEEEEEE---TT-SEEEEEHHHHH-TTSHHHHS-TTGGGEES------SS-SEEEEEEEEBTTC-T
T ss_pred             EEEeccCCCCCeeEEEEEEEecCCCCCceEEEeeecccCCCCccccCCCCCCceeecc--hhHHHHHHHhhcCCCCCCCc
Confidence            65432  2 2   2789997321    1111100000              1122211  123456777888887754  


Q ss_pred             ---------cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        202 ---------FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       202 ---------~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                               .+.+.+.|..+                  +    ..|++.++...++|.|.|++.-
T Consensus       248 ~~C~~~~~~~~~~~~~~~~~------------------~----~~l~f~~a~~~~sGLYv~V~~~  290 (439)
T PF02480_consen  248 RRCPSTSHIEPVPGLRWASN------------------G----VDLQFTNAPESASGLYVFVVYY  290 (439)
T ss_dssp             TTTEEEEEE---TTEEE-TT------------------S----SSEEESS--GGG-EEEEEEEEE
T ss_pred             CCCCchhccCcCccccccCC------------------C----cceEecCCCcccCceEEEEEEE
Confidence                     22223333311                  1    2899999999999999998864

gE is involved in virus spread but is not essential for propagation [].; GO: 0016020 membrane; PDB: 2GJ7_F 2GIY_B.

>TIGR00864 PCC polycystin cation channel protein

Probab=94.90  E-value=6.7  Score=42.18  Aligned_cols=210  Identities=12%  Similarity=0.086  Sum_probs=112.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ......+..|+.++|.+.+.......+.|...++.....      ..+..+..               +-.-.|.|.-.+
T Consensus      1873 ~as~~~~~~n~~v~fsa~l~~GS~Vtf~w~fGdgs~~~~------t~~~t~~H---------------sY~~~G~Y~VtV 1931 (2740)
T TIGR00864      1873 KASKKIAAIGEKVEFQILLAAGSAVNFRLQIGGAAPEVL------QPGPRFSH---------------SFPRVDDHMVNL 1931 (2740)
T ss_pred             ecccccccCCCEEEEEEEecCCCceEEEEEeCCCCceee------cCCCeEEe---------------ecCCCCcEEEEE
Confidence            344556778999999999876677899998866543221      11111111               112335555554


Q ss_pred             --ecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcC-----CCceeecCCeeC----
Q psy15734        107 --NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE-----DGKAINYNGELV----  174 (314)
Q Consensus       107 --~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~-----~~~~~~~~~~~~----  174 (314)
                        .|. +.......+.|.++-.-..+.......+..|+...+.-.+....+..+.|+..     ++......++..    
T Consensus      1932 ~A~N~Vs~~~a~~~V~Vle~V~gL~I~~~c~~~~~~g~~~tF~A~v~~g~~V~f~W~f~~~~~~g~~~~~~~G~~vty~~ 2011 (2740)
T TIGR00864      1932 RAKNEVSCAQANLHIEVLEAVRGLQIPDCCAAGIATGEEKNFTANVQRGKPVAFAWTFDLHHLHGDSLVIHMGKDVSYTA 2011 (2740)
T ss_pred             EEEeccceeeeeEEEEEEEeccceEecCCcccceecCceEEEEEEEecCCceEEEEEeeecccCCCcceeecCCceEEcc
Confidence              232 33444455566555332222211111256788888888776544556888742     122211111111    


Q ss_pred             ---------------------CCeEEc---------CCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCce
Q psy15734        175 ---------------------PPMLTI---------PNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDY  223 (314)
Q Consensus       175 ---------------------~p~~~~---------~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~  223 (314)
                                           +-.+..         .........+..+.|.|.+...+. ..+.|-++|+.........
T Consensus      2012 ~~~G~~~I~v~A~N~l~s~n~t~~i~VQ~~i~~~~L~~~p~~~~~n~~v~f~~~~~~~~~~v~~~WDFGDGt~~~~T~~~ 2091 (2740)
T TIGR00864      2012 EAAGLLEIQLGAFNALGAENITLQLEAQDALMDAALQAGPQDCFTNKMAQFEAATSPKPNFMACHWDFGDGSAGQDTDEP 2091 (2740)
T ss_pred             CCCcEEEEEEEEEcccCcccccEEEEEEeheeeEEEeecCcceecCceEEEEEEEccCCCcEEEEEEecCCCCccccCCc
Confidence                                 111111         111223456889999999876554 4778999877654432222


Q ss_pred             eeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE--eeCCCCceeEEEEEEEec
Q psy15734        224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA--VNALGETDGFIKVYVNLV  273 (314)
Q Consensus       224 ~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a--~n~~g~~~~~~~l~V~~~  273 (314)
                      +..+.                ....|.|.-++  .|..........+.|+.+
T Consensus      2092 ~~sHt----------------Y~r~G~Y~V~V~a~N~VS~~~a~~~i~V~vl 2127 (2740)
T TIGR00864      2092 RAEHE----------------YLHPGDYRVQVNASNLVSFFSAHAEINVQVL 2127 (2740)
T ss_pred             eeEEE----------------ecCCccEEEEEEEEcceeeeeeEEEEEEEEe
Confidence            22111                12348787654  577777667777766654

Note: this model has been restricted to the amino half because for technical reasons.

>PHA02914 Immunoglobulin-like domain protein; Provisional

Probab=94.34  E-value=2.9  Score=35.48  Aligned_cols=126  Identities=17%  Similarity=0.278  Sum_probs=71.8

Q ss_pred             CCcceEEEcCCcEEEEEEecC---CCceEEEEEEcCcee---EEEeeeee-----eecCcCEEEEe-----CCceeEEEE
Q psy15734         27 PVANVTATVGKEALMACVVEN---LREYKVAWVKMITQT---ILSIHHKV-----VTQNKRVSITF-----NDHRSWFLH   90 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~---~~~~~~~~-----~~~~~~~~~~~-----~~~~~~~L~   90 (314)
                      +.+.+.+..|..+.|.|..+-   ..-....|+..+-+.   +-......     ...+..+.+..     .+....+|+
T Consensus       270 ~~~~~~~~~g~~v~~~c~~s~~~~e~i~~~~w~~t~~~~~~~~g~~~~~~~v~~~~~~~~~~~i~~~~~~s~dlk~STLT  349 (500)
T PHA02914        270 KFDEVMLEVGKRVDIECFFSMCGNENISNAKWIDTGFEIGPLIGTVKSKDIVEGDFAEDDDFMISAHANYSDDLKNSTLT  349 (500)
T ss_pred             ccceeEeccCcEEEEEEEEeecCCcccccceEEecCCcccceeEEEEecceeecccccCCceEEEEecccccchhhceEE
Confidence            356778888999999999853   334578898744221   11111111     11122222221     334456899


Q ss_pred             EeeecCCCCeEEEEEEecCCCcce--eEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEeccc--CCCceEEEc
Q psy15734         91 LRDVQETDRGWYMCQINTVPMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGY--PEPYVAWRR  161 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~--p~p~~~W~~  161 (314)
                      |.+++.+++|.|.|.+..+ ...+  ...|.|.....+.+.        .+|. .....|-+-.+  .++.+.|..
T Consensus       350 Ikka~I~N~GCY~~~a~~g-~~~~ec~~Cl~V~d~V~f~W~--------~e~~n~T~V~Cyv~sy~~kp~si~wkv  416 (500)
T PHA02914        350 IKKAHINNAGCYEAQAFMG-KFKEECRHCFKVADHVFFKWN--------TEGDNETKVACYAAQYDMQPFSILWKS  416 (500)
T ss_pred             eeeEEEEcCCceEEEEecC-cchhhhhhheEeccEEEEEEE--------eccCceEEEEEEEEecccCCceeEEEE
Confidence            9999999999999999543 2222  233554433333332        1333 33457876554  345688887

>PHA03282 envelope glycoprotein E; Provisional

Probab=94.27  E-value=1.4  Score=38.10  Aligned_cols=21  Identities=29%  Similarity=0.437  Sum_probs=19.2

Q ss_pred             EEEEeecCCCCCeEEEEEEee
Q psy15734        237 TLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      .|.+.++..+++|.|.|++.-
T Consensus       334 dL~F~nAp~saSGLYVfVl~y  354 (540)
T PHA03282        334 NLQLRDASEASGGLYVCVVYV  354 (540)
T ss_pred             ceEecCCCcccCceEEEEEEE
Confidence            899999999999999998863

>KOG1480|consensus

Probab=94.19  E-value=0.022  Score=51.54  Aligned_cols=73  Identities=18%  Similarity=0.299  Sum_probs=50.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         24 FAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |...+....|..+..+.|.|.. .+.+...+.|++++ ..+        .++..+....+    ..|.+..+++.|.|+|
T Consensus       132 f~~~p~~q~V~~~s~~~l~cr~pe~~paae~~w~k~e-~~~--------~pd~n~~~~~d----~~li~~~arlsd~~ny  198 (909)
T KOG1480|consen  132 FEQSPVGQEVQEETTLQLPCRPPEGDPKAEVEWLKNE-VVI--------DPDANVIRASD----HNLIISQARLSDSGNY  198 (909)
T ss_pred             hccChhhheecccccccccccCcccchhhhhhccccC-CCC--------Cccccchhhhc----CCccccchhhhhcccc
Confidence            3445666778888999999987 56788899999954 221        11222221111    1599999999999999


Q ss_pred             EEEEecC
Q psy15734        103 MCQINTV  109 (314)
Q Consensus       103 ~C~~~~~  109 (314)
                      +|.+.+.
T Consensus       199 tc~a~ni  205 (909)
T KOG1480|consen  199 TCEATNI  205 (909)
T ss_pred             eeeeehh
Confidence            9999764

>PHA03271 envelope glycoprotein C; Provisional

Probab=93.92  E-value=3.6  Score=35.12  Aligned_cols=158  Identities=14%  Similarity=0.145  Sum_probs=75.2

Q ss_pred             eEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC-Cc--eeEEEEEeeecCCCCeEEEE
Q psy15734         31 VTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-DH--RSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+.+|+...-.|.+..+ |  ...+.|++++.. .....    ..+...-.... +.  ...+|.+.+...+..=+.+|
T Consensus       255 ~PVL~Ge~YkAtC~vAnYYPP~SvrlrWf~nG~~-V~~~~----~rdt~~~w~d~~~g~S~VSTltl~a~~~~~PPsLRC  329 (490)
T PHA03271        255 PPVLSGENYKASCIVRHFYPPGSVYVSWRQNGNI-ATPRK----DRDGSFWWFESGRGATLVSTITLGNSGIDPPPKISC  329 (490)
T ss_pred             CccccCCCceEEEEeeeecCCCceEEEEEeCCcc-ccCcc----ccceeEEEecCCCceeEEEEEEcccccCCCCCCceE
Confidence            346789999999999763 3  368999996533 21110    00111000000 00  01134443332233347999


Q ss_pred             EEec-CC-Cc---ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCCceeec--CCeeC--
Q psy15734        105 QINT-VP-MT---SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDGKAINY--NGELV--  174 (314)
Q Consensus       105 ~~~~-~~-~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~~~~~~--~~~~~--  174 (314)
                      .+.- .. ..   ++.+.-.|+.+|.+.       +....|.-   .|.+...|. ..+.|.-.|+..-..  +....  
T Consensus       330 eV~W~rd~v~s~rnAaatP~VY~~P~IS-------v~FedG~A---VCtA~CVP~gV~lrWlVgD~p~pn~t~d~~itGv  399 (490)
T PHA03271        330 LVAWKQGDMISTTNATAIPTVYHHPRIS-------LAFKDGYA---ICTIECVPSGITVRWLVHDEPQPNTTYDTVVTGL  399 (490)
T ss_pred             EEEEccCCceeeeecccCCccccCCeEE-------EEEeCCEE---EEeccccCCCcEEEEEecCCCCCCcccccccccc
Confidence            9832 22 11   111122333333332       22333443   376665543 489999855432111  11111  


Q ss_pred             ----CCeEEcCCCcceee-cCccEEEEEEEeecCC
Q psy15734        175 ----PPMLTIPNQLEGAF-VSQTVELHCHTEAFPA  204 (314)
Q Consensus       175 ----~p~~~~~~~~~~v~-~g~~~~l~C~~~g~p~  204 (314)
                          |-...+.+. ..+. .++.+.-+|...|+|.
T Consensus       400 C~erPGlVNLrS~-lPlSd~dgpveYTCrL~GYP~  433 (490)
T PHA03271        400 CRTIDRHRNLISR-IPVQDNWQKTKYTCRLIGYPF  433 (490)
T ss_pred             cCCCCCceeeecc-CCchhcCCceeEEEEEeecCC
Confidence                222222222 1222 3467999999999986

>PHA03042 CD47-like protein; Provisional

Probab=93.80  E-value=0.75  Score=36.70  Aligned_cols=58  Identities=19%  Similarity=0.319  Sum_probs=36.0

Q ss_pred             EcCCcEEEEEEecCC-----CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         34 TVGKEALMACVVENL-----REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~-----~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      .-.+++.++|.+...     ....+.|..++ ..+...       ++.        +..+|.+.... .=.|+|+|.+.+
T Consensus        29 ~CN~TV~IpC~v~n~~~~ni~~~~V~Wkf~~-~~If~~-------n~t--------n~aSL~~~f~~-~l~GNYTCEv~~   91 (286)
T PHA03042         29 TCNKTIVIVCNLNLLIYYNISNIHINWKFNN-KVIFKK-------NNT--------NTSSLKFNFSK-NLSGNYTCEAIN   91 (286)
T ss_pred             ecCceEEEEeecCChhhcCccceEEEEEeCC-eeEEEe-------cCC--------cceEEEEeccc-cCCCceeEEEee
Confidence            347899999998542     45789999954 333211       111        11256666543 347999999954

>PHA03283 envelope glycoprotein E; Provisional

Probab=93.78  E-value=1  Score=39.42  Aligned_cols=75  Identities=15%  Similarity=0.200  Sum_probs=45.6

Q ss_pred             EEEEeeecCCCCeEEEEEEecCCCcce-eEEEEEEeCCceeee---------c----------CcceeEEecCceEEEEE
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVPMTSQ-KGYLQVVVPPRILLD---------R----------TSTDVVVREGTEVTLEC  147 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~l~v~~~p~~~~~---------~----------~~~~~~~~~g~~~~l~C  147 (314)
                      .|.|.+++..|+|.|+-..++++.... .+.|.|..++.....         +          .-.......|+++.+.-
T Consensus       135 ~l~I~~at~~~aGVYtly~r~d~~~~~~vflvtVk~~~~~~~~~Pp~~~pv~P~~h~a~f~v~nYhS~vf~~GDtf~lsi  214 (542)
T PHA03283        135 VLQIQRATPNIAGVYTLHVSSDGMMKHSVFFVTVKKPPKQPQTPPAPLVPQVPARHHTDFHVRGYHSRVYSPGDSFDLSV  214 (542)
T ss_pred             eeEEEecccccCeEEEEEecCCCceEEEEEEEEecCCCcCCCCCCCCccccCCccCCceEEEecceeEEecCCCceeEeE
Confidence            699999999999999999876554322 234555442111100         0          01223467899888866


Q ss_pred             Eeccc--C---CCceEEEcC
Q psy15734        148 SAVGY--P---EPYVAWRRE  162 (314)
Q Consensus       148 ~~~~~--p---~p~~~W~~~  162 (314)
                      .....  .   ...+.|+..
T Consensus       215 ~l~s~~~d~~fs~~i~Wyy~  234 (542)
T PHA03283        215 HLESDIGDPSFSATIDWYYM  234 (542)
T ss_pred             EEeeccCCCCceEEEEEEEe
Confidence            55432  2   237899974

>PHA03286 envelope glycoprotein E; Provisional

Probab=93.23  E-value=1.9  Score=37.05  Aligned_cols=75  Identities=11%  Similarity=-0.033  Sum_probs=45.9

Q ss_pred             EEEEeeecCCCCeEEEEEEecCCCcce--eEEEEEEeC----C-cee--ee----------cCcceeEEecCceEEEEEE
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVPMTSQ--KGYLQVVVP----P-RIL--LD----------RTSTDVVVREGTEVTLECS  148 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~----p-~~~--~~----------~~~~~~~~~~g~~~~l~C~  148 (314)
                      .|.|.|++..++|.|+-..+++.+...  .+.|.|...    + ...  ..          ..........|+++.+.-.
T Consensus       128 ~L~I~nAt~qnaGiYtly~rnd~~~~~~~vflVtV~~~~~~r~p~~~~pv~p~~~~~~f~l~ny~S~lF~~GDTF~vSv~  207 (492)
T PHA03286        128 ELTILNASSQNAGIYIRYSRNGTRTAVMDVLVVWVSGHGRARDPTMNIPITPPSTRVDLSLKNFKAFLYNVGDTVDASVT  207 (492)
T ss_pred             ceEEeeccccccceEEEEEcCCCCcEEEEEEEEEEecCCCCCCCCcccCCCCcccceEEEEecccceEecCCCeEEEEEE
Confidence            699999999999999999876643333  334455311    1 111  11          1123345678999877765


Q ss_pred             ecc-c-C---CCceEEEcC
Q psy15734        149 AVG-Y-P---EPYVAWRRE  162 (314)
Q Consensus       149 ~~~-~-p---~p~~~W~~~  162 (314)
                      ... . .   ...+.|+..
T Consensus       208 l~~~~~d~~Fsl~i~W~y~  226 (492)
T PHA03286        208 AHLTNWAGAFSLEFRVLFL  226 (492)
T ss_pred             EeecccCCCceEEEEEEEe
Confidence            542 1 1   337999974

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=93.21  E-value=0.56  Score=39.03  Aligned_cols=34  Identities=18%  Similarity=0.344  Sum_probs=22.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc--eeEEecC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNE  212 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~  212 (314)
                      ||.+.+.....   .+ .++|+|.|.|+-+.  .+.|.++
T Consensus       203 pP~V~Vt~k~~---~~-~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        203 TPTVKVTGEEL---GD-NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CCceEEecccC---CC-CceEEEEEEeEeCCccEEEEEec
Confidence            66655533311   22 68999999997665  5579997

>KOG4597|consensus

Probab=93.21  E-value=0.19  Score=43.06  Aligned_cols=92  Identities=13%  Similarity=0.142  Sum_probs=58.9

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEc--CceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKM--ITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .+..-+....+..|++..+.|.+.|.+.+.|+|-+.  +++.+.-.... .  -++..+.    +...|.|.|....|+|
T Consensus       198 ~l~~cpa~w~vg~wetcS~tCg~~G~q~r~V~c~qv~anr~~vv~~~nq-~--~e~p~vt----stcql~ic~ewq~~a~  270 (560)
T KOG4597|consen  198 ALVDCPAEWFVGDWETCSSTCGVQGRQYRVVTCEQVFANRENVVMRPNQ-T--VENPVVT----STCQLVICNEWQADAG  270 (560)
T ss_pred             ccccCcchhhcccchhhcccccccCCcCceeeeehhhccccceeecCcc-c--cCCccee----eeeeEEEcchhhcCCC
Confidence            344456677888999999999999999999999653  22221110000 0  0111111    2247999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .|+|.+.+. +...+.+.+.+.
T Consensus       271 w~tCs~rcg~g~~~rdv~c~s~  292 (560)
T KOG4597|consen  271 WYTCSARCGAGFLRRDVPCSSV  292 (560)
T ss_pred             ceeeccccccceeeccceeeee
Confidence            999999764 334444444443

>PHA03273 envelope glycoprotein C; Provisional

Probab=92.92  E-value=5.8  Score=34.46  Aligned_cols=171  Identities=18%  Similarity=0.241  Sum_probs=84.4

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCC-C--ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCc--eeEEEEE
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENL-R--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH--RSWFLHL   91 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~--~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i   91 (314)
                      ....+|.+...  ...+.+|+...-.|.+..+ |  ...+.|++++. .+.....   . ........++.  ...+|.+
T Consensus       233 ~~yr~Psvsv~--~~PvL~Ge~y~A~C~aa~YYPp~Sv~~rWf~dg~-~V~~~~~---~-~~~~~~~~~gl~T~vStlt~  305 (486)
T PHA03273        233 STYNAPLVDLS--VHPSLKGENYRAVCVVASYFPHSSVKLRWYKNAK-EVDFTKY---V-TNASSVWVDGLITRISTLSI  305 (486)
T ss_pred             EEecCCccccc--CCccccCCCceEEEEeeeecCCCceEEEEEeCCe-ecccccc---c-eeeEEEecCCceEEEEEEec
Confidence            33556665433  3447889999999999663 3  36899999654 3221000   0 00111111111  1124554


Q ss_pred             eeecC-CCCeEEEEEEec-C-CCcc----eeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--CceEEEcC
Q psy15734         92 RDVQE-TDRGWYMCQINT-V-PMTS----QKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRRE  162 (314)
Q Consensus        92 ~~~~~-~d~G~Y~C~~~~-~-~~~~----~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~  162 (314)
                      ..... +-.=+.+|.+.- . ....    ..+.-.|+.+|.+..       ....|.-   .|.+...|.  ..+.|.-.
T Consensus       306 ~~~~~~~~PP~lrC~v~W~rd~vS~~RfsAt~~P~Vy~~P~Is~-------~F~~G~A---VCtA~CVP~egV~l~W~v~  375 (486)
T PHA03273        306 PVDPDEEYTPSLRCSIEWYRDEVSFARIAKAGTPSVFVAPTVSV-------TVEDGDA---VCTAKCVPSTGVFVSWSVN  375 (486)
T ss_pred             cCcccCCCCCCceEEEEEccCCcceeeccccccCccccCCeEEE-------EEeCCEE---EEecccccCCCeeEEEEcc
Confidence            44322 233478999832 1 1111    122233444444432       2333333   487777765  58999986


Q ss_pred             CCceeecC-CeeC------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734        163 DGKAINYN-GELV------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       163 ~~~~~~~~-~~~~------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  204 (314)
                      |..+.... ....      |-...+.+..-.-.....+.-+|...|+|.
T Consensus       376 D~~p~a~~~~~~tG~C~~~PglvNlrS~~pls~~dgp~eYTCrl~GYP~  424 (486)
T PHA03273        376 DHLPGVPSQDMTTGVCSSHPGLVNMQSRRPLSEENGEREYSCIIEGYPD  424 (486)
T ss_pred             CCCCCCcccccccccCCCCCCceeeeccccccccCCceeEEEEEeecCC
Confidence            63322111 1111      223333221111123467899999999986

>PHA03240 envelope glycoprotein M; Provisional

Probab=90.72  E-value=0.59  Score=35.61  Aligned_cols=75  Identities=16%  Similarity=0.088  Sum_probs=42.5

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEE-------cCceeEEEeeeeee------------ecCcCEEEEeCCceeEE
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVK-------MITQTILSIHHKVV------------TQNKRVSITFNDHRSWF   88 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~-------~~~~~~~~~~~~~~------------~~~~~~~~~~~~~~~~~   88 (314)
                      -.++.+.+|++|+|.-.---.+.-.+.||+       .++...........            ..+.++...   -.+++
T Consensus        30 Cievt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~G~G~~~~plC~Ytppk~~r~ktl~~t~~nt~i~y~---C~Nst  106 (258)
T PHA03240         30 CEEHTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGITGNGDKLHPICTYDPPKNGKGKTLDESAENSFILYE---CHNST  106 (258)
T ss_pred             ceecccccCCceeeCCcccCCCCCEEEEEeeecccccCCCCCCceeEEecCCccccccccccccCCCceEEE---eccce
Confidence            346788999999996543223567899999       33321110000000            011122111   12348


Q ss_pred             EEEeeecCCCCeEEEEE
Q psy15734         89 LHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~  105 (314)
                      |.|.++..+|.|+|.-.
T Consensus       107 L~i~~vn~sd~~nYcr~  123 (258)
T PHA03240        107 LIIAHLNLSDAGEYCRK  123 (258)
T ss_pred             EEEEEEeecCcchhhhc
Confidence            99999999999998433

>PHA03052 Hypothetical protein; Provisional

Probab=89.88  E-value=1.3  Score=27.08  Aligned_cols=31  Identities=16%  Similarity=0.425  Sum_probs=24.1

Q ss_pred             cceEEEcCCcEEEEEEec---CCCceEEEEEEcC
Q psy15734         29 ANVTATVGKEALMACVVE---NLREYKVAWVKMI   59 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~---~~~~~~v~W~~~~   59 (314)
                      ..+.+..|.+++|.|.+.   +.....|.|.-++
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~   38 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNG   38 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCC
Confidence            678899999999999993   3345678888743

>PHA03240 envelope glycoprotein M; Provisional

Probab=89.81  E-value=0.88  Score=34.69  Aligned_cols=106  Identities=14%  Similarity=0.112  Sum_probs=56.3

Q ss_pred             eEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC
Q psy15734        135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG  214 (314)
Q Consensus       135 ~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~  214 (314)
                      +.+.+|++++|.-.-.-.|...+.|++..+..+.                   -.|+...+-|.-.+.-+-       ++
T Consensus        33 vt~r~G~nVTLga~~~lhpgq~v~Wy~~~c~~~~-------------------G~G~~~~plC~Ytppk~~-------r~   86 (258)
T PHA03240         33 HTTREGDPLLLGGGHGLGAGQKAHWYKHKCDGIT-------------------GNGDKLHPICTYDPPKNG-------KG   86 (258)
T ss_pred             cccccCCceeeCCcccCCCCCEEEEEeeeccccc-------------------CCCCCCceeEEecCCccc-------cc
Confidence            4567899988765322235668999984433221                   235566666765432110       01


Q ss_pred             eeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc----eeEEEEEE
Q psy15734        215 DMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET----DGFIKVYV  270 (314)
Q Consensus       215 ~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V  270 (314)
                      +.+... ....+. ..-   .+++|.|.++..+|.|+|.-.-....|..    ..-+.|.|
T Consensus        87 ktl~~t~~nt~i~-y~C---~NstL~i~~vn~sd~~nYcr~k~~~~g~~e~pt~sC~~l~~  143 (258)
T PHA03240         87 KTLDESAENSFIL-YEC---HNSTLIIAHLNLSDAGEYCRKKCPPKGDCEFPTMSCFRLIL  143 (258)
T ss_pred             cccccccCCCceE-EEe---ccceEEEEEEeecCcchhhhccCCCCCCcCCCcceeeeEee
Confidence            111111 111111 111   13599999999999999975555555543    12445555

>PF02124 Marek_A: Marek's disease glycoprotein A; InterPro: IPR001038 Equid herpesvirus 1 (Equine herpesvirus 1, EHV-1) glycoprotein 13 (EHV-1 gp13) has the characteristic features of a membrane-spanning protein: an N-terminal signal sequence; a hydrophobic membrane anchor region; a charged C-terminal cytoplasmic tail; and an exterior domain with nine potential N-glycosylation sites []

Probab=89.12  E-value=6.3  Score=30.57  Aligned_cols=98  Identities=12%  Similarity=0.056  Sum_probs=57.1

Q ss_pred             eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEe-ecCCCCCeEEEEEEeeCCCCcee---EEEEEEEecCCCeeEE
Q psy15734        206 LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIR-SILSHQFGSYRCVAVNALGETDG---FIKVYVNLVDGDIFQI  280 (314)
Q Consensus       206 ~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~---~~~l~V~~~~~~~~~~  280 (314)
                      .+.|+.|+........+.......+| .+..|+|.+. +...+..-..+|.+.-.......   +..+.-..-+++.+.+
T Consensus         8 ~~~Wf~dg~~v~~~~~~~~~~~~~~G~~s~vStl~~~~~~~~~~pp~i~C~v~W~r~~v~~~r~~a~~~P~Vy~~P~vsv   87 (211)
T PF02124_consen    8 RFRWFEDGNPVEPRFIRDSSQVWSDGLFSRVSTLTLPGNSADSPPPSIRCQVTWYRDSVSETRFNATATPSVYPKPRVSV   87 (211)
T ss_pred             EEEEEECCEeCCccceeeEEEEecCCcEEEEEEEEecCCCCCCCCCcceEEEEEccCCCeeeEeecccccceecCCEEEE
Confidence            56799975533322222222333344 7888899994 44455566899999876554322   2233333444455543


Q ss_pred             EEccccccEeEEEEEeeccC--CCccceE
Q psy15734        281 RKMSRLHMGAYLCIASNGVV--PSVSHRI  307 (314)
Q Consensus       281 ~~~~~~~~g~~~C~a~~~~~--~~~~w~v  307 (314)
                          +...|...|.|..=|-  -.+.|.+
T Consensus        88 ----~F~~g~AVC~A~CVP~~~v~l~W~v  112 (211)
T PF02124_consen   88 ----RFEDGYAVCTARCVPRGNVTLRWSV  112 (211)
T ss_pred             ----EecCCEEEEEcceeeCCCeEEEEEE
Confidence                3466788999988773  3667765

EHV-1 gp13 is the structural homologue of the gC-like glycoproteins of the Human herpesvirus 1 (HHV-1) and Human herpesvirus 2 (HHV-2) (gC-1 and gC-2 respectively), Pseudorabies virus (strain Indiana-Funkhauser/Becker) (PRV) (gIII) and Human herpesvirus 3 (HHV-3) (gp66). Secretory glycoprotein GP57-65 precursor (glycoprotein A - GA) is similar to Herpesvirus glycoprotein C, and belongs to the immunoglobulin gene superfamily [, ]. GA is thought to play an immunoevasive role in the pathogenesis of Marek's disease. It is a candidate for causing the early-stage immunosuppression that occurs after MDHV infection.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=86.86  E-value=3.6  Score=27.09  Aligned_cols=67  Identities=13%  Similarity=0.163  Sum_probs=38.4

Q ss_pred             CCcceeecCccEEEEEEEee-----cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +....+..|.+++..|....     .....+.|..++.  .....+++..  .++   .+.+++.+.....+-.|.|..
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~--~iP~~qy~~i--n~~---~SsVT~~~~~~~~~~L~cC~l   81 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE--KIPGSQYRVI--NDT---VSSVTLPNLNPTGATLFCCKL   81 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC--ESTCGCEEEE--STT---EEEEEESS--SSEEEEEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE--ECChhHccee--CCe---EEEEEEccCCCCCceEEEEEE
Confidence            34456889999999999853     2456888988644  3344444332  222   246677666665555666653

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>PF03921 ICAM_N: Intercellular adhesion molecule (ICAM), N-terminal domain; InterPro: IPR013768 Intercellular adhesion molecules (ICAMs) and vascular cell adhesion molecule-1 (VCAM-1) are part of the immunoglobulin superfamily

Probab=86.58  E-value=7.2  Score=25.78  Aligned_cols=82  Identities=10%  Similarity=0.084  Sum_probs=48.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +.+.|....|..|.++.+.|..+- |.| .+-|.-.-.+... .+.            ....+.+.+++. | ..-.|.+
T Consensus         6 v~v~P~~~vV~~G~Sv~VNCStsC-~~p~~~GLET~L~k~~~~~g~------------~W~~f~LsnV~~-d-s~~~C~~   70 (91)
T PF03921_consen    6 VRVSPEEPVVPPGGSVWVNCSTSC-PQPEKIGLETSLSKTELDSGP------------QWKAFQLSNVTE-D-SSPLCFF   70 (91)
T ss_dssp             EEEESSEEEEETTEEEEEEEEESS-SS-SEEEEESSSEEEEEEEET------------TEEEEEEEEE-S-C-EEEEEEE
T ss_pred             EEEECCccEECCCCCEEEEEcCCC-CCCCcceEEEecCCcccCCCC------------cEEEEEEEcccc-C-CeEEEEE
Confidence            345667778999999999999753 333 3334332111111 111            134788889986 4 5777887


Q ss_pred             eeCCCCceeEEEEEEEecC
Q psy15734        256 VNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~~~  274 (314)
                      .=.......+..|+|...|
T Consensus        71 ~C~g~Q~~~~~~ItVY~~P   89 (91)
T PF03921_consen   71 NCSGEQSSASANITVYKPP   89 (91)
T ss_dssp             EETTEEEEEEEEEEEEB--
T ss_pred             EcCCeEEEeEEeeEEeCCC
Confidence            6543344677788887665

They are important in inflammation, immune responses and in intracellular signalling events []. The ICAM family consists of five members, designated ICAM-1 to ICAM-5. They are known to bind to leucocyte integrins CD11/CD18 during inflammation and in immune responses. In addition, ICAMs may exist in soluble forms in human plasma, due to activation and proteolysis mechanisms at cell surfaces. ICAM-1 (CD54) contains five Ig-like domains. It is expressed on leucocytes, endothelial and epithelial cells, and is upregulated in response to bacterial invasion. The protein is a ligand for lymphocyte-function associated (LFA) antigens and also a receptor for CD11a,b/CD18, fibrinogen, human rhinovirus and Plasmodium falciparum-infected erythrocytes. ICAM-1 binding sites for CD11a/CD18 and its other binding partners are located in the first domain and are overlapping. ICAM-1 domain 2 seems to play an important role in maintaining the conformation of domain 1 and particularly the structural integrity of the LFA-1 ligand-binding site []. The 3-dimensional atomic structure of the tandem N-terminal Ig-like domains (D1 and D2) of ICAM-1 has been determined to 2.2A resolution and fitted into a cryoelectron microscopy reconstruction of a rhinovirus-ICAM-1 complex []. Extensive charge interactions between ICAM-1 and human rhinovirusesare largely conserved in major and minor receptor groups of rhinoviruses. The interaction of ICAMs with LFA-1 is mediated by a divalent cation bound to the insertion (I)-domain on the alpha chain of LFA-1 and the carboxyl group of a conserved glutamic acid residue on ICAMs. ICAM-2 (CD102) has two Ig-like domains. It is expressed on endothelial cells, leucocytes and platelets, and binds to CD11a'b/CD18. The protein is refractory to proinflammatory cytokines, and plays an important role in the adhesion of leucocytes to the uninduced endothelium []. ICAM-3 (CD50) contains five Ig-like domains and binds to leucocyte integrins CD11a'd/CD18. The protein plays an important role in the immune response and perhaps in signal transduction []. ICAM-4 (LW blood group Ag) is red blood cell (RBC) specific and binds to CD11a'b/CD18. It is associated with the RBC Rh antigens and could be important in retaining immature red cells in the bone marrow, or in the uptake of senescent cells into the spleen []. ICAM-5 (telencephalin) has nine Ig-like domains and is confined to the telencephalon of the brain. The role of this CD11a/CD18 binding molecule is not yet known []. VCAM-1 was first described as a cytokine-inducible endothelial adhesion molecule. It can bind to leucocyte integrin VL-4 (very late antigen-4) to recruit leucocytes to sites of inflammation []. The predominant form of VCAM-1 in vivo has an N-terminal extracellular region comprising seven Ig-like domains []. A conserved integrin-binding motif has been identified in domains 1 and 4, variants of which are present in the N-terminal domain of all members of the integrin-binding subgroup of the immunoglobulin superfamily. The structure of a VLA-4-binding fragment comprising the first two domains of VCAM-1 has been determined to 1.8A resolution. The integrin-binding motif is exposed and forms the N-terminal region of the loop between beta-strands C and D of domain 1 []. VCAM-1 domains 1 and 2 are structurally similar to ICAM-1 and ICAM-2 []. This entry represents the N-terminal domain of ICAM proteins such as ICAM-2, ICAM-3 and ICAM-4.; PDB: 3BN3_B 1T0P_B 1ZXQ_A 3TCX_A 1MQ8_A 1Z7Z_I 1IC1_A 1IAM_A.

>PHA02865 MHC-like TNF binding protein; Provisional

Probab=85.35  E-value=6.9  Score=32.82  Aligned_cols=21  Identities=10%  Similarity=0.382  Sum_probs=17.1

Q ss_pred             cEEEEEEecCC-C-ceEEEEEEc
Q psy15734         38 EALMACVVENL-R-EYKVAWVKM   58 (314)
Q Consensus        38 ~~~l~C~~~~~-~-~~~v~W~~~   58 (314)
                      .++|.|.+.|. | ...+.|.|+
T Consensus       216 ~~tL~C~A~GFYP~~I~v~W~kd  238 (338)
T PHA02865        216 NTTLFCTFDSHYPSSVAAKWYNS  238 (338)
T ss_pred             CceEEEEEEeEeCCccEEEEEec
Confidence            57999999884 3 478899996

>PHA03052 Hypothetical protein; Provisional

Probab=82.68  E-value=2.6  Score=25.78  Aligned_cols=31  Identities=6%  Similarity=0.198  Sum_probs=23.2

Q ss_pred             CcceeecCccEEEEEEEe-ec--CCceeEEecCC
Q psy15734        183 QLEGAFVSQTVELHCHTE-AF--PASLNYWTNEK  213 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~-g~--p~p~~~W~~~~  213 (314)
                      ....+..|..++|.|.|. |.  ..+.+.|.-++
T Consensus         5 ~~i~~slGs~ltI~Ckv~lg~g~~~a~V~W~~N~   38 (69)
T PHA03052          5 EGIVTSLGSNLTITCKVSLRPPTTDADVFWISNG   38 (69)
T ss_pred             ccEEEEccCCceEeEEEEecCCCcceEEEEEeCC
Confidence            566788999999999995 33  34567787754

>PHA03112 IL-18 binding protein; Provisional

Probab=82.53  E-value=5.9  Score=28.45  Aligned_cols=78  Identities=17%  Similarity=0.317  Sum_probs=43.7

Q ss_pred             ecCccEEEEEEEeec-CC-ceeEEecCCCeeeecC---Cce------eeeEeeCCeeeEEEEEEeecCCC-CCeEEEEEE
Q psy15734        188 FVSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITG---DDY------EDSRLINGYSCHMTLKIRSILSH-QFGSYRCVA  255 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~---~~~------~~~~~~~~~~~~s~L~i~~~~~~-d~G~Y~C~a  255 (314)
                      ..++.+.|+|.+-+. |. ..+.|..++.+.....   ..+      ..............|.+.++..+ +.-.++|+.
T Consensus        36 k~~~~vvL~C~gcs~fp~fS~lYWl~gn~~s~~d~~~~~hy~e~~~~~~~~~~~~~~~~~~l~l~~vt~~~~~T~~TCVL  115 (141)
T PHA03112         36 KETEKVVLECRGCSYFPKFSYVYWLIGNNKSDVDQKPIEHYGEGIYESEKPRTCDNEPRTDLIVYNVTDEMKFTKLTCVL  115 (141)
T ss_pred             CCCCEEEEEEECccCCCCceEEEEEcCCCccchhccccccccccccCCccccccCCcceeEEEEEecCCcceecceEEEE
Confidence            458999999999864 65 4667997642211100   000      00111111223347777777754 344888988


Q ss_pred             eeCCCCceeE
Q psy15734        256 VNALGETDGF  265 (314)
Q Consensus       256 ~n~~g~~~~~  265 (314)
                      ....+...+.
T Consensus       116 ~D~~~~~k~~  125 (141)
T PHA03112        116 MDLDGPIKKS  125 (141)
T ss_pred             ecCCchhhHH
Confidence            7776655444

>KOG0613|consensus

Probab=81.92  E-value=5.6  Score=39.11  Aligned_cols=75  Identities=12%  Similarity=0.080  Sum_probs=43.7

Q ss_pred             EEEEeeecCCCCeEEEEEEecCCCcce-eEE--EEEE--------------eCCceeee-cCcceeEEecCceEEEEEEe
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVPMTSQ-KGY--LQVV--------------VPPRILLD-RTSTDVVVREGTEVTLECSA  149 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~~~~~-~~~--l~v~--------------~~p~~~~~-~~~~~~~~~~g~~~~l~C~~  149 (314)
                      .+.|.+....+.+.|+|...+.+.... .+.  +.+.              .++..... .....+..+.+..+.+.|..
T Consensus       279 t~~i~~~~~~~~~s~t~~~~~~~~q~~~~v~~~~~i~~~~~~p~~~~~aaa~~~~~~v~~~~~~~v~a~d~~~v~m~~~~  358 (1205)
T KOG0613|consen  279 TKTIQNDGPEPELSWTVADKRQGCQDRFKVTEEAPIGKGKPGPESLQAAAARPPEVPVGLVRNLSVTARDNTLVEMPTAL  358 (1205)
T ss_pred             cccccccCCccccceeeecccCCcccceeeeEEeeccccccCchhhhhhccCCccccccccccceeccccCcceeecccc
Confidence            566777777777888887744332211 111  1111              01211111 11234456778889999999


Q ss_pred             cccCCCc-eEEEcC
Q psy15734        150 VGYPEPY-VAWRRE  162 (314)
Q Consensus       150 ~~~p~p~-~~W~~~  162 (314)
                      .+.+.|. +.|+..
T Consensus       359 ~~~~~p~~~~~~~~  372 (1205)
T KOG0613|consen  359 SGTQKPDEAQGYHG  372 (1205)
T ss_pred             cCCcCCchheeecc
Confidence            9998885 999984

>PF05790 C2-set: Immunoglobulin C2-set domain; InterPro: IPR008424 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=80.88  E-value=12  Score=24.02  Aligned_cols=20  Identities=15%  Similarity=0.368  Sum_probs=16.4

Q ss_pred             EEEEeeecCCCCeEEEEEEe
Q psy15734         88 FLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      .+........|+|.+.|.+.
T Consensus        44 ~~~~~~~~~~d~G~w~C~a~   63 (80)
T PF05790_consen   44 LVSTFTPTTEDSGTWVCTAS   63 (80)
T ss_dssp             EEEEESBTCGGSEEEEEEEE
T ss_pred             EEEEecCCCCCCEEEEEEEc
Confidence            45666778899999999994

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents C2-set domains, which are Ig-like domains resembling the antibody constant domain. C2-set domains are found primarily in the mammalian T-cell surface antigens CD2 (Cluster of Differentiation 2), CD4 and CD80, as well as in vascular (VCAM) and intercellular (ICAM) cell adhesion molecules. CD2 mediates T-cell adhesion via its ectodomain, and signal transduction utilising its 117-amino acid cytoplasmic tail []. CD2 displays structural and functional similarities with African swine fever virus (ASFV) LMW8-DR, a protein that is involved in cell-cell adhesion and immune response modulation, suggesting a possible role in the pathogenesis of ASFV infection []. CD4 is the primary receptor for HIV-1. CD4 has four immunoglobulin-like domains in its extracellular region that share the same structure, but can differ in sequence. Certain extracellular domains may be involved in dimerisation [].; GO: 0007155 cell adhesion, 0016021 integral to membrane; PDB: 1CID_A 1CDU_A 1WIQ_B 2NY4_B 2NY2_B 1WIP_B 1WIO_A 3S4S_G 1CDY_A 3S5L_G ....

>PF06832 BiPBP_C: Penicillin-Binding Protein C-terminus Family; InterPro: IPR009647 This conserved region of approximately 90 residues is found in a sub-group of bacterial Penicillin-Binding Proteins (PBPs)

Probab=80.43  E-value=14  Score=24.24  Aligned_cols=56  Identities=18%  Similarity=0.183  Sum_probs=34.0

Q ss_pred             cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ...|.+.+.+. .+.++|+-| +..+.......            .+.+.   ....|.|+-.+....|...+
T Consensus        31 ~~~l~l~a~~~-~~~~~W~vd-g~~~g~~~~~~------------~~~~~---~~~~G~h~l~vvD~~G~~~~   86 (89)
T PF06832_consen   31 RQPLVLKAAGG-RGPVYWFVD-GEPLGTTQPGH------------QLFWQ---PDRPGEHTLTVVDAQGRSAS   86 (89)
T ss_pred             cceEEEEEeCC-CCcEEEEEC-CEEcccCCCCC------------eEEeC---CCCCeeEEEEEEcCCCCEEE
Confidence            56666666666 459999997 55442222111            33222   24579999888888876544

A variable length loop region separates this region from the transpeptidase unit (IPR001460 from INTERPRO). It is predicted to be a beta fold.

>PF06328 Lep_receptor_Ig: Ig-like C2-type domain; InterPro: IPR010457 This entry represents a ligand-binding domain that displays similarity to C2-set immunoglobulin domains (antibody constant domain 2) []

Probab=80.27  E-value=14  Score=24.32  Aligned_cols=67  Identities=12%  Similarity=0.310  Sum_probs=39.6

Q ss_pred             CcceEEEcCCcEEEEEEecC-----CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      ++...+..|++++..|....     .....+.|..++. .+         +..++....+..  ..+++.++....+-.|
T Consensus        10 p~~pvv~lGS~vtasC~l~~~c~~~~~a~~I~Wkln~~-~i---------P~~qy~~in~~~--SsVT~~~~~~~~~~L~   77 (89)
T PF06328_consen   10 PPSPVVSLGSNVTASCVLKQNCSHSVNASQIVWKLNGE-KI---------PGSQYRVINDTV--SSVTLPNLNPTGATLF   77 (89)
T ss_dssp             CSSSEEETTS-EEEEEEE-CCCHCT-STTCEEEECSSC-ES---------TCGCEEEESTTE--EEEEESS--SSEEEEE
T ss_pred             cCCCEEeCCCCEEEEEEEECCCCCCcccceEEEEECCE-EC---------ChhHcceeCCeE--EEEEEccCCCCCceEE
Confidence            34556899999999999853     2346788887443 22         233443333322  3678888777777778


Q ss_pred             EEEE
Q psy15734        103 MCQI  106 (314)
Q Consensus       103 ~C~~  106 (314)
                      -|..
T Consensus        78 cC~l   81 (89)
T PF06328_consen   78 CCKL   81 (89)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            8875

The two cysteine residues form a disulphide bridge.; PDB: 3L5H_A 1P9M_A 1I1R_A 2D9Q_B.

>KOG1026|consensus

Probab=80.14  E-value=8.7  Score=36.09  Aligned_cols=132  Identities=16%  Similarity=0.129  Sum_probs=72.2

Q ss_pred             EEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC------------------------C----CeEEcCCCccee
Q psy15734        136 VVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------P----PMLTIPNQLEGA  187 (314)
Q Consensus       136 ~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~------------------------~----p~~~~~~~~~~v  187 (314)
                      .+..|..+++.|.+.+.|.|...|+. .+..........                        -    .....+......
T Consensus       203 ~v~~~~~~~~~c~~~~~~vp~~~~~~-~~~~~~~~~~~~~~c~~~~~~~~~~~c~~E~~~~~~~~~v~~~~~~p~~~~~~  281 (774)
T KOG1026|consen  203 TVEEGSSITLKCSQAGIPVPCHYWFP-NCLASSNTNQTSSLCRSECEVLENDLCIAENAVARSNPSILLVVDLPKAEVLL  281 (774)
T ss_pred             hhcccchheeeeecccCCCcceeeec-ccccccCCCcccccccccceeeechhhHHHHhhhhcCceeeeEEecccccccC
Confidence            46678999999999999999999998 333322211110                        0    011111111111


Q ss_pred             ecCccEEEEEEEe---ecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        188 FVSQTVELHCHTE---AFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       188 ~~g~~~~l~C~~~---g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ..-.+-.-.|...   +.|.+...|.+++.. +.-......+.... .     -+........+.|.|+|.+.|..|...
T Consensus       282 ~~~~~~~~~C~~~~~~~~~~~~~~~~~~~~~-~~~~g~~~~t~s~~~~-----C~~~~~~~h~~~~~~~~~~e~~~g~~~  355 (774)
T KOG1026|consen  282 CSPLSDHHNCIPIGITANPGPALHWCYNGSG-LNYRGTVCVTKSGKEQ-----CLPWNDPPHSHNGNYTLFPELPGGKNY  355 (774)
T ss_pred             CCCccccCceeeeeccCCCCCceeeeecCcc-ceEecccccccccCcC-----CcccCcCcccccCcceeeecccCcccc
Confidence            1111113344443   566677889886433 22111111111111 2     344444467789999999999999887


Q ss_pred             eEEEEEEEecC
Q psy15734        264 GFIKVYVNLVD  274 (314)
Q Consensus       264 ~~~~l~V~~~~  274 (314)
                      ......+...|
T Consensus       356 ~r~~g~~~~~P  366 (774)
T KOG1026|consen  356 CRNPGGFMSRP  366 (774)
T ss_pred             ccCcCccccCC
Confidence            77666665544

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	314
1qz1_A	291	Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam		2e-08
2iep_A	192	Crystal Structure Of Immunoglobulin-Like Domains 1		5e-08
2xy1_A	192	Crystal Structure Of Ncam2 Ig3-4 Length = 192		7e-08
3laf_A	403	Structure Of Dcc, A Netrin-1 Receptor Length = 403		5e-07
1rhf_A	182	Crystal Structure Of Human Tyro3-D1d2 Length = 182		9e-06
2v5t_A	189	Crystal Structure Of Ncam2 Ig2-3 Length = 189		1e-05
3b43_A	570	I-band Fragment I65-i70 From Titin Length = 570		2e-05
2wim_A	291	Crystal Structure Of Ncam2 Ig1-3 Length = 291		2e-05
3dmk_A	816	Crystal Structure Of Down Syndrome Cell Adhesion Mo		3e-05
3kld_A	384	Ptprg Cntn4 Complex Length = 384		4e-05
3jxa_A	383	Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length =		5e-05
4i0k_A	222	Crystal Structure Of Murine B7-H3 Extracellular Dom		1e-04
3m45_A	108	Crystal Structure Of Ig1 Domain Of Mouse Syncam 2 L		2e-04
4frw_A	218	Crystal Structure Of Human Nectin-4 Extracellular F		3e-04
3s97_C	201	Ptprz Cntn1 Complex Length = 201		7e-04

>pdb|1QZ1|A Chain A, Crystal Structure Of The Ig 1-2-3 Fragment Of Ncam Length = 291

Iteration: 1
 Score = 56.2 bits (134), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 57/284 (20%), Positives = 104/284 (36%), Gaps = 57/284 (20%)
Query: 34  TVGKEALMAC-VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR 92
           +VG+     C V  + ++  ++W             K+    +R+S+ +ND  S  L + 
Sbjct: 15  SVGESKFFLCQVAGDAKDKDISWFS-------PNGEKLSPNQQRISVVWNDDDSSTLTIY 67
Query: 93  DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
           +    D G Y C +     T  +  + V +  +++     T    +EG +  + C  V  
Sbjct: 68  NANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSS 127
Query: 153 PEPYVAWRREDGKAI------------NY----------------------NGEL----- 173
             P + W+ +    I            NY                       GE+     
Sbjct: 128 LPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDI 187
Query: 174 -----VPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
                VPP +     +  A  +  Q+V L C  + FP     WT + G+ I   ++ ++ 
Sbjct: 188 QVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-GEPIENEEEDDEK 246
Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            + +  S  +T  IR++  +    Y C+A N  GE D  I + V
Sbjct: 247 HIFSDDSSELT--IRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>pdb|2IEP|A Chain A, Crystal Structure Of Immunoglobulin-Like Domains 1 And 2 Of The Receptor Tyrosine Kinase Musk Length = 192

Iteration: 1
 Score = 55.1 bits (131), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 41/149 (27%), Positives = 68/149 (45%), Gaps = 19/149 (12%)
Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQ--NKR 76
           P  P    P+  V A V + A   C VE+  + +++W +          +K++ +  + R
Sbjct: 5   PKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTR----------NKILIKLFDTR 54
Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTD 134
            SI  N      L +  V+++D G Y C  N          G LQV + P+I   R   +
Sbjct: 55  YSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKI--TRPPIN 109
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRRED 163
           V + EG +  L C+ +G P+P V+W + D
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIKGD 138

>pdb|2XY1|A Chain A, Crystal Structure Of Ncam2 Ig3-4 Length = 192

Iteration: 1
 Score = 54.7 bits (130), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 38/144 (26%), Positives = 67/144 (46%), Gaps = 18/144 (12%)
Query: 21  MPRFAEPVA--NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           MP  + P    N TA  G+E   +C      E  ++W +         + K++ +N++  
Sbjct: 2   MPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEKYI 52
Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
           +  ++     L +R++  +D G Y+C+  N      ++ +LQV V P I+  +  T    
Sbjct: 53  LKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQPHIIQLKNET---T 106
Query: 138 REGTEVTLECSAVGYPEPYVAWRR 161
            E  +VTL C A G P P + W+R
Sbjct: 107 YENGQVTLVCDAEGEPIPEITWKR 130

>pdb|3LAF|A Chain A, Structure Of Dcc, A Netrin-1 Receptor Length = 403

Iteration: 1
 Score = 52.0 bits (123), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 71/300 (23%), Positives = 109/300 (36%), Gaps = 75/300 (25%)
Query: 23  RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN 82
           RF     ++TA +G   L+ C V       + W K   Q  L+     +  + RV +   
Sbjct: 123 RFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQK--NQQDLN----PIPGDSRVVVL-- 174
Query: 83  DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLD----------RTS 132
              S  L +  +Q  D G Y C     P +++ G    V   RIL D          +  
Sbjct: 175 --PSGALQISRLQPGDSGVYRCSARN-PASTRTGNEAEV---RILSDPGLHRQLYFLQRP 228
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRR--------------------------EDGKA 166
           ++V+  EG +  LEC   GYP P   W R                          +D   
Sbjct: 229 SNVIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSG 288
Query: 167 -----INYNGE----------LVPP-MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWT 210
                + Y  E          LVPP  L  P+ L  A+ S  +E  C     P     W 
Sbjct: 289 TYTCVVTYKNENISASAELTVLVPPWFLNHPSNLY-AYESMDIEFECAVSGKPVPTVNWM 347
Query: 211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            + GD++I  D ++   ++ G +    L+I  ++    G Y+CVA N  G      ++ V
Sbjct: 348 -KNGDVVIPSDYFQ---IVGGSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIV 399

>pdb|1RHF|A Chain A, Crystal Structure Of Human Tyro3-D1d2 Length = 182

Iteration: 1
 Score = 47.4 bits (111), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 41/137 (29%), Positives = 58/137 (42%), Gaps = 18/137 (13%)
Query: 30  NVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSITFNDHRSW 87
            +T + G+   + C VE   E  + WVK   + Q +  ++  V  Q          H   
Sbjct: 11  KLTVSQGQPVKLNCSVEGXEEPDIQWVKDGAVVQNLDQLYIPVSEQ----------HWIG 60
Query: 88  FLHLRDVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
           FL L+ V+ +D G Y CQ+     T  SQ  +L V   P   ++    D+ V       L
Sbjct: 61  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVE--PKDLAVPPNAPFQL 118
Query: 146 ECSAVGYPEP--YVAWR 160
            C AVG PEP   V WR
Sbjct: 119 SCEAVGPPEPVTIVWWR 135

>pdb|2V5T|A Chain A, Crystal Structure Of Ncam2 Ig2-3 Length = 189

Iteration: 1
 Score = 47.0 bits (110), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 60/261 (22%), Positives = 99/261 (37%), Gaps = 85/261 (32%)
Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           M  F E V+      G++A + C V +     V+W+          H++ VT       T
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL---------YHNEEVT-------T 45
Query: 81  FNDHRSWFL-----HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRT 131
            +D+R   L      + ++ ++D G Y C+   V    +  +  ++V    PP I + + 
Sbjct: 46  ISDNRFAMLANNNLQILNINKSDEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAISMPQK 104
Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQ 191
           S +     G E+T  C A G PEP ++W R        NG+L+                 
Sbjct: 105 SFNATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIE---------------- 140
Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
                              NEK   I+ G + E             L +R+I++   G Y
Sbjct: 141 ------------------ENEK--YILKGSNTE-------------LTVRNIINSDGGPY 167
Query: 252 RCVAVNALGETD--GFIKVYV 270
            C A N  GE +   F++V+V
Sbjct: 168 VCRATNKAGEDEKQAFLQVFV 188

>pdb|3B43|A Chain A, I-band Fragment I65-i70 From Titin Length = 570

Iteration: 1
 Score = 46.6 bits (109), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 41/156 (26%), Positives = 66/156 (42%), Gaps = 17/156 (10%)
Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F EP+ +V A +G+   + C V+   E ++AW K  T+   +  +K+  +N   S+  
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVASLVI 65
Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV---VVPPRILLDRTSTDVVV 137
           N           V  +D G Y C+  N+V   +    L +    +PP     R   DV  
Sbjct: 66  N----------KVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFA--RKLKDVHE 113
Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL 173
             G  V  EC   G     V+W + DG+ +  +  L
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANL 148

>pdb|2WIM|A Chain A, Crystal Structure Of Ncam2 Ig1-3 Length = 291

Iteration: 1
 Score = 46.2 bits (108), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 59/258 (22%), Positives = 98/258 (37%), Gaps = 85/258 (32%)
Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           F E V+      G++A + C V +     V+W+          H++ VT       T +D
Sbjct: 101 FREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWL---------YHNEEVT-------TISD 144
Query: 84  HRSWFL-----HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRTSTD 134
           +R   L      + ++ ++D G Y C+   V    +  +  ++V    PP I + + S +
Sbjct: 145 NRFAMLANNNLQILNINKSDEGIYRCE-GRVEARGEIDFRDIIVIVNVPPAISMPQKSFN 203
Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
                G E+T  C A G PEP ++W R        NG+L+                    
Sbjct: 204 ATAERGEEMTFSCRASGSPEPAISWFR--------NGKLIE------------------- 236
Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                           NEK   I+ G + E             L +R+I++   G Y C 
Sbjct: 237 ---------------ENEK--YILKGSNTE-------------LTVRNIINSDGGPYVCR 266
Query: 255 AVNALGETD--GFIKVYV 270
           A N  GE +   F++V+V
Sbjct: 267 ATNKAGEDEKQAFLQVFV 284

>pdb|3DMK|A Chain A, Crystal Structure Of Down Syndrome Cell Adhesion Molecule (Dscam) Isoform 1.30.30, N-Terminal Eight Ig Domains Length = 816

Iteration: 1
 Score = 45.8 bits (107), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 25/101 (24%), Positives = 50/101 (49%), Gaps = 3/101 (2%)
Query: 65  SIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQ-KGYLQVVVP 123
           ++  + ++++  ++ +    R   L +  V+ +  G + C    +    Q    L V VP
Sbjct: 655 TLDGQAISEDLGITTSRVGRRGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVP 714
Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
           PR +L+   TD    +G++  +EC A G+P+P V W++  G
Sbjct: 715 PRWILE--PTDKAFAQGSDAKVECKADGFPKPQVTWKKAVG 753

>pdb|3KLD|A Chain A, Ptprg Cntn4 Complex Length = 384

Iteration: 1
 Score = 45.4 bits (106), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 52/110 (47%), Gaps = 28/110 (25%)
Query: 80  TFNDHRSWF------LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTS 132
           ++ D+R +       L++  V+++D G Y C + NTV  T+ K    V+ PP  L+ R  
Sbjct: 144 SYQDNRRFVSQETGNLYIAKVEKSDVGNYTCVVTNTV--TNHK----VLGPPTPLILRND 197
Query: 133 ---------------TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
                            V   +GT V LEC A+G P P + WRR DGK I
Sbjct: 198 GVMGEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 247

>pdb|3JXA|A Chain A, Immunoglobulin Domains 1-4 Of Mouse Cntn4 Length = 383

Iteration: 1
 Score = 45.1 bits (105), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 34/95 (35%), Positives = 46/95 (48%), Gaps = 22/95 (23%)
Query: 89  LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTS--------------- 132
           L++  V+++D G Y C + NTV  T+ K    V+ PP  L+ R                 
Sbjct: 158 LYIAKVEKSDVGNYTCVVTNTV--TNHK----VLGPPTPLILRNDGVMGEYEPKIEVQFP 211
Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
             V   +GT V LEC A+G P P + WRR DGK I
Sbjct: 212 ETVPAEKGTTVKLECFALGNPVPTILWRRADGKPI 246

>pdb|4I0K|A Chain A, Crystal Structure Of Murine B7-H3 Extracellular Domain Length = 222

Iteration: 1
 Score = 43.5 bits (101), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 42/160 (26%), Positives = 68/160 (42%), Gaps = 24/160 (15%)
Query: 31  VTATVGKEALMACVVENLREYKVAWVKMI---TQTILSIHHKVVTQNKRVSITFNDHRSW 87
           V A V  +A + C       + +A + +I   T T   +H    T+ +     +++  + 
Sbjct: 5   VVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHS--FTEGRDQGSAYSNRTAL 62
Query: 88  F----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP---PRILLDRTSTD 134
           F          L L+ V+ TD G Y C ++     S    LQV  P   P + L+     
Sbjct: 63  FPDLLVQGNASLRLQRVRVTDEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKD- 121
Query: 135 VVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGEL 173
             +R G  VT+ CS+  GYPE  V W+  DG+ +   G +
Sbjct: 122 --LRPGNMVTITCSSYQGYPEAEVFWK--DGQGVPLTGNV 157

>pdb|3M45|A Chain A, Crystal Structure Of Ig1 Domain Of Mouse Syncam 2 Length = 108

Iteration: 1
 Score = 43.1 bits (100), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 26/95 (27%), Positives = 42/95 (44%), Gaps = 1/95 (1%)
Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
           NVT   G  A++ C V+      + W     QT+     K +  N R+ +         +
Sbjct: 15  NVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDN-RIELVRASWHELSI 73
Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
            + DV  +D G Y C + T+P+ + K YL V+  P
Sbjct: 74  SVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108

>pdb|4FRW|A Chain A, Crystal Structure Of Human Nectin-4 Extracellular Fragment D1-D2 Length = 218

Iteration: 1
 Score = 42.7 bits (99), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 27/76 (35%), Positives = 39/76 (51%), Gaps = 7/76 (9%)
Query: 91  LRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPPRILLDRTSTDVVVREGTEVTL--E 146
           LR+  + D G Y C+++T P  S +    L+V+VPP   L   +    + EG  +TL   
Sbjct: 83  LRNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPP---LPSLNPGPALEEGQGLTLAAS 139
Query: 147 CSAVGYPEPYVAWRRE 162
           C+A G P P V W  E
Sbjct: 140 CTAEGSPAPSVTWDTE 155

>pdb|3S97|C Chain C, Ptprz Cntn1 Complex Length = 201

Iteration: 1
 Score = 41.2 bits (95), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 30/102 (29%), Positives = 52/102 (50%), Gaps = 16/102 (15%)
Query: 71  VTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
           +T +KR    F    +  L++ +V+ +D+G Y C +++  +T  K      +P   + +R
Sbjct: 53  ITMDKR---RFVSQTNGNLYIANVEASDKGNYSCFVSSPSIT--KSVFSKFIPLIPIPER 107
Query: 131 TS----TDVVVR-------EGTEVTLECSAVGYPEPYVAWRR 161
           T+     D+VV+        G  VTLEC A+G P P + WR+
Sbjct: 108 TTKPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRK 149

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	314
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	5e-62
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	7e-12
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	6e-06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	2e-40
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	1e-12
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-37
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	4e-15
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	7e-37
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	1e-04
2ch8_A	201	BARF1, P33, 33 kDa early protein; viral protein, i	7e-33
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-32
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	2e-15
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-32
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	2e-05
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	2e-31
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	2e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	3e-30
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	2e-07
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	1e-05
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-30
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-09
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	4e-08
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	2e-29
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-28
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-26
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-21
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	1e-13
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	2e-07
1nn8_R	302	CD155 antigen, poliovirus receptor; icosahedral vi	2e-28
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	1e-27
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-25
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	3e-20
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-16
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	2e-15
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	5e-07
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-27
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	3e-20
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	4e-12
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	1e-06
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	5e-27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-21
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	4e-17
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	8e-14
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-26
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	9e-07
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	1e-04
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	2e-26
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	6e-06
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	3e-26
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	7e-07
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	6e-26
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	1e-09
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	2e-25
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	1e-05
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-25
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	8e-08
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	2e-07
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	4e-25
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	1e-07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	2e-24
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	3e-11
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-23
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	5e-19
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-15
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	1e-07
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	2e-04
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	2e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	3e-23
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	1e-09
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	9e-06
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	3e-23
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	1e-08
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	2e-07
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	4e-23
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	9e-22
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	2e-09
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	9e-23
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	2e-15
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	5e-10
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	1e-22
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	2e-12
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	4e-04
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	2e-22
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	3e-08
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	1e-04
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-22
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	5e-05
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	7e-22
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	2e-08
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	3e-08
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	4e-21
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-18
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	1e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-17
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	2e-08
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-21
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	5e-16
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	3e-11
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	5e-21
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	3e-04
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	8e-04
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	7e-21
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	8e-21
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	3e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	5e-07
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	1e-04
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	1e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	1e-20
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	3e-10
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	8e-04
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	3e-20
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-16
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	6e-14
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	9e-13
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	4e-20
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	5e-04
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	4e-20
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	2e-05
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	1e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	1e-19
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	8e-10
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	7e-06
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	7e-19
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	5e-12
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	2e-06
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	7e-19
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	1e-18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-10
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	3e-09
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	3e-18
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	4e-18
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	4e-18
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	1e-11
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	6e-18
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	8e-06
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	7e-18
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	2e-09
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	3e-07
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	8e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	8e-18
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	3e-07
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	1e-17
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	9e-06
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	3e-17
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	8e-09
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	2e-04
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	3e-17
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-16
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	2e-07
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	4e-16
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	8e-08
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	1e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	1e-15
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-08
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	2e-06
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	3e-15
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	1e-12
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	2e-07
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	3e-15
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	4e-08
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	8e-05
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	2e-14
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	1e-07
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-14
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	3e-06
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	2e-04
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	3e-14
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	7e-13
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	6e-04
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	1e-13
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	7e-05
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	1e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-13
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	3e-04
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	6e-13
2ptt_A	110	CD48 antigen; CD244, CD48, NK cell receptor, X-RAY	8e-13
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	1e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	2e-12
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	5e-10
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	6e-12
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	3e-06
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	2e-05
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	5e-05
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-12
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	1e-11
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	9e-10
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	3e-09
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	2e-08
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	5e-12
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	4e-07
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	7e-12
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	2e-11
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	1e-04
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-11
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	2e-05
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	3e-11
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	2e-10
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	4e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-11
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	5e-05
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	8e-04
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	6e-11
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	2e-09
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	7e-11
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	2e-05
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	9e-11
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	4e-05
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	1e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-10
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	1e-05
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	2e-10
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	2e-10
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	2e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-10
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	2e-07
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	3e-10
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	9e-09
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	5e-10
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	4e-07
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	5e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-10
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-09
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	6e-05
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	6e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-10
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	7e-06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	7e-10
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	2e-04
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	9e-10
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	1e-09
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	9e-10
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-09
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-06
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	1e-04
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	1e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-09
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	1e-05
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-09
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	2e-09
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	2e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-09
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	3e-06
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	3e-09
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	1e-07
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	4e-09
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	5e-09
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	8e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	6e-09
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	4e-07
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-09
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	6e-05
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	9e-09
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	4e-07
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	1e-08
2ens_A	96	Advanced glycosylation END product-specific recept	1e-08
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	2e-08
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	6e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	2e-08
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	4e-04
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	4e-08
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	3e-06
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	5e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	5e-08
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	3e-06
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	6e-08
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	2e-05
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	7e-08
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	2e-06
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	7e-08
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	1e-05
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	8e-08
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	2e-04
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	1e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	1e-07
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	3e-04
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	2e-07
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	1e-06
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	2e-07
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	3e-04
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	3e-07
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	7e-04
1vt4_I	1221	APAF-1 related killer DARK; drosophila apoptosome,	3e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	4e-07
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	1e-04
2edo_A	121	CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	4e-07
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	3e-05
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	7e-07
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	6e-05
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	7e-07
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	9e-07
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	1e-06
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	3e-05
2or8_A	116	Hepatitis A virus cellular receptor 1 homolog; bet	1e-06
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	1e-06
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	1e-06
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	2e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	2e-06
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	7e-04
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	2e-06
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	1e-04
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	2e-06
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	5e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	3e-06
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	5e-04
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	3e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	4e-06
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	2e-05
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	4e-06
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	6e-06
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	1e-05
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	6e-04
2q87_A	110	CMRF35-H antigen; all-beta, immunoglobulin, IG-sup	1e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	2e-05
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	3e-04
2pnd_A	119	V-SET and immunoglobulin domain containing 4; comp	3e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	4e-05
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	8e-05
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	4e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	4e-05
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	8e-04
1neu_A	124	Myelin P0 protein; structural protein, glycoprotei	4e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	5e-05
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	3e-04
3bia_X	116	T-cell immunoglobulin and mucin domain- containing	6e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	6e-05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	7e-04
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	8e-05
2or7_A	115	T-cell immunoglobulin and mucin domain- containing	8e-05
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	1e-04
4ei6_A	208	Valpha1 XV19 type II natural killer T cell recept	1e-04
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	1e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-04
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	1e-04
2frg_P	106	TREM-like transcript-1; immunoglobulin-like, beta-	2e-04
1hkf_A	122	NKP44, NK cell activating receptor; natural cytoto	2e-04
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	3e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	3e-04
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	4e-04
1he7_A	126	High affinity nerve growth factor receptor; transf	4e-04
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	6e-04
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	7e-04

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score =  197 bits (503), Expect = 5e-62
 Identities = 51/296 (17%), Positives = 99/296 (33%), Gaps = 57/296 (19%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
            +     +    +VG+     C V  + ++  ++W     + +           +R+S+ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKL-------SPNQQRISVV 55

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           +ND  S  L + +    D G Y C +     T  +  + V +  +++     T    +EG
Sbjct: 56  WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG 115

Query: 141 TEVTLECSAVGYPEPYVAWRREDGK---------------------------------AI 167
            +  + C  V    P + W+ +                                      
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDEGTYRCEGR 175

Query: 168 NYNGE-----------LVPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKG 214
                            VPP +     +  A  +  Q+V L C  + FP     WT + G
Sbjct: 176 ILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKD-G 234

Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           + I   ++ ++  + +  S    L IR++  +    Y C+A N  GE D  I + V
Sbjct: 235 EPIENEEEDDEKHIFSDDS--SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKV 288

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 64.1 bits (156), Expect = 7e-12
 Identities = 29/202 (14%), Positives = 49/202 (24%), Gaps = 62/202 (30%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAI--------- 167
           LQV + P            +  G      C   G   +  ++W   +G+ +         
Sbjct: 3   LQVDIVPS--------QGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISV 54

Query: 168 ----NYNGEL--------------------------------VPPMLTIPNQLEGAFVS- 190
               + +  L                                +   L   N         
Sbjct: 55  VWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKE 114

Query: 191 -QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
            +   + C   +       W ++ G  +I   D     L N       L+IR I     G
Sbjct: 115 GEDAVIVCDVVSSLPPTIIWKHK-GRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEG 168

Query: 250 SYRCVAVNALGETDGFIKVYVN 271
           +YRC           F  + V 
Sbjct: 169 TYRCEGRILARGEINFKDIQVI 190

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A Length = 291

 Score = 46.0 bits (109), Expect = 6e-06
 Identities = 9/44 (20%), Positives = 16/44 (36%), Gaps = 1/44 (2%)

Query: 270 VNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSV-SHRIMVTVH 312
             ++  +  QIR + +   G Y C         +    I V V+
Sbjct: 149 FIVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVN 192

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score =  143 bits (362), Expect = 2e-40
 Identities = 42/367 (11%), Positives = 85/367 (23%), Gaps = 97/367 (26%)

Query: 31  VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK-------RVSITFND 83
           V    G    + C     +  +  W       IL      +T+             +  D
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
             ++ L +++++  D   Y+C++       Q     +             D  + +G  +
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS---------DTHLLQGQSL 114

Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELV----------------------------- 174
           TL   +     P V  R   GK I     L                              
Sbjct: 115 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQDSGTWTCTVLQNQKKVEFKIDI 174

Query: 175 -----PPMLTIPNQLEGAFVSQTVELHCHTEAF---------------PASLNYWTNEKG 214
                    +I  + EG  V  +  L    E                   S   +  +  
Sbjct: 175 VVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKNK 234

Query: 215 DMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
           ++ +     +   ++      H+TL          G+         G+    + + V   
Sbjct: 235 EVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRA 294

Query: 274 DG-------------------------------DIFQIRKMSRLHMGAYLCIASNGVVPS 302
                                               +   +     G + C+ S+     
Sbjct: 295 TQLQKNLTCEVWGPTSPKLMLSLKLENKEAKVSKREKAVWVLNPEAGMWQCLLSDSGQVL 354

Query: 303 VSHRIMV 309
           +   I V
Sbjct: 355 LESNIKV 361

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E Length = 363

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 25/214 (11%), Positives = 46/214 (21%), Gaps = 74/214 (34%)

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
           V+ ++G  V L C+A         W+  +   I  N                        
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSK------------- 50

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                                     +D  DSR       +  L I+++      +Y C 
Sbjct: 51  -------------------------LNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 85

Query: 255 AVNALGETD-GFIKVYV----------------------------------NLVDGDIFQ 279
             +   E       +                                    N+  G    
Sbjct: 86  VEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 145

Query: 280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHC 313
           + ++     G + C         V  +I + V  
Sbjct: 146 VSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVLA 178

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score =  130 bits (327), Expect = 4e-37
 Identities = 24/151 (15%), Positives = 45/151 (29%), Gaps = 16/151 (10%)

Query: 31  VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR-------VSITFND 83
           V    G    + C     +  +  W       IL      +T+             +  D
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 64

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
             ++ L +++++  D   Y+C++       Q     +             D  + +G  +
Sbjct: 65  QGNFPLIIKNLKIEDSDTYICEVEDQKEEVQLLVFGLTANS---------DTHLLQGQSL 115

Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELV 174
           TL   +     P V  R   GK I     L 
Sbjct: 116 TLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ... Length = 184

 Score = 71.2 bits (174), Expect = 4e-15
 Identities = 25/213 (11%), Positives = 46/213 (21%), Gaps = 74/213 (34%)

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
           V+ ++G  V L C+A         W+  +   I  N                        
Sbjct: 5   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKL------------ 52

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                                     +D  DSR       +  L I+++      +Y C 
Sbjct: 53  --------------------------NDRADSRRSLWDQGNFPLIIKNLKIEDSDTYICE 86

Query: 255 AVNALGETD-GFIKVYV----------------------------------NLVDGDIFQ 279
             +   E       +                                    N+  G    
Sbjct: 87  VEDQKEEVQLLVFGLTANSDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLS 146

Query: 280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
           + ++     G + C         V  +I + V 
Sbjct: 147 VSQLELQDSGTWTCTVLQN-QKKVEFKIDIVVL 178

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score =  126 bits (319), Expect = 7e-37
 Identities = 26/104 (25%), Positives = 44/104 (42%), Gaps = 2/104 (1%)

Query: 22  PRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
            +   P+  NVT   G  A++ C V+      + W     Q  L    K   ++ R+ + 
Sbjct: 6   SQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQ-TLYFDDKKALRDNRIELV 64

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
                   + + DV  +D G Y C + T+P+ + K YL V+  P
Sbjct: 65  RASWHELSISVSDVSLSDEGQYTCSLFTMPVKTSKAYLTVLGVP 108

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus} Length = 108

 Score = 39.8 bits (93), Expect = 1e-04
 Identities = 7/41 (17%), Positives = 14/41 (34%)

Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
            + +V V EG    L C         + W     + + ++ 
Sbjct: 12  LTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDD 52

>2ch8_A BARF1, P33, 33 kDa early protein; viral protein, immunoglobulin domain, oncogene; HET: NAG MAN; 2.3A {Epstein-barr virus} Length = 201

 Score =  119 bits (300), Expect = 7e-33
 Identities = 33/146 (22%), Positives = 63/146 (43%), Gaps = 13/146 (8%)

Query: 31  VTATVGKEALMACVVENLR---EYKVAWVKMITQ----TILSIHHKVVTQNKRVSITFND 83
           VTA +G+   +      +    E +V+W K+        I  +HH V+         F+ 
Sbjct: 1   VTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDI 60

Query: 84  HRS---WFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
           HRS   +FL +     +  G Y+C++       +++ +L VV P  + +   S      +
Sbjct: 61  HRSANTFFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSV--HSERSQFPD 118

Query: 140 GTEVTLECSAVGYPEPYVAWRREDGK 165
            + +T+ C+   +P P+V W   +G 
Sbjct: 119 FSVLTVTCTVNAFPHPHVQWLMPEGV 144

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score =  120 bits (303), Expect = 2e-32
 Identities = 51/293 (17%), Positives = 85/293 (29%), Gaps = 60/293 (20%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F     +V   +G+     C V      K+ W K          ++ +       +T 
Sbjct: 6   PFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD---------NREIRPGGNYKMTL 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
            ++ +  L +  V + D G Y C   N     S    L V  PPR +     +  +V++ 
Sbjct: 57  VENTA-TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPS-RIVKQD 114

Query: 141 TEVTLECSAVGYPEPYVAWRREDG----------------------------------KA 166
                EC   G PE  V W +++                                   +A
Sbjct: 115 EHTRYECKIGGSPEIKVLWYKDETEIQESSKFRMSFVESVAVLEMYNLSVEDSGDYTCEA 174

Query: 167 INYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI 217
            N  G            PP+               V L C  +  P     W   K    
Sbjct: 175 HNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWH--KDKRE 232

Query: 218 ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           +          I   +   ++ I ++ S   G Y+C A N +G       + +
Sbjct: 233 LRSGKK---YKIMSENFLTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITL 282

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A Length = 284

 Score = 74.4 bits (183), Expect = 2e-15
 Identities = 37/291 (12%), Positives = 64/291 (21%), Gaps = 109/291 (37%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG---------------- 164
           + PP          V +  G   T +C   G     + W +++                 
Sbjct: 3   MAPPFFD--LKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENT 60

Query: 165 ------------------KAINYNGE---------LVPP-MLTIPNQLEGAFVSQTVELH 196
                              A N  G+           PP  +            +     
Sbjct: 61  ATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYE 120

Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
           C     P     W  +    I     +  S + +       L++ ++     G Y C A 
Sbjct: 121 CKIGGSPEIKVLWYKD-ETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAH 175

Query: 257 NALGETDGFIKVYVN--------------------------------------------- 271
           NA G       + V                                              
Sbjct: 176 NAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRS 235

Query: 272 ------LVDGDIF--QIRKMSRLHMGAYLCIASN--GVVPSVSHRIMVTVH 312
                 + +  +    I  +    +G Y C ASN  G   S +    +T+ 
Sbjct: 236 GKKYKIMSENFLTSIHILNVDSADIGEYQCKASNDVG---SYTCVGSITLK 283

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score =  115 bits (290), Expect = 2e-32
 Identities = 18/119 (15%), Positives = 43/119 (36%), Gaps = 1/119 (0%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           M         +T   G+   + CV    +   + W+     TI  ++   V +N +  + 
Sbjct: 1   MGSLTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIF-LNEYPVLKNSKYQLL 59

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
            +      + + +V   D G Y C   +  +++++  + V+   +    R  +     E
Sbjct: 60  HHSANQLSITVPNVTLQDEGVYKCLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLE 118

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens} Length = 124

 Score = 42.3 bits (99), Expect = 2e-05
 Identities = 10/42 (23%), Positives = 15/42 (35%)

Query: 130 RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
             +  + V EG  +TL+C         + W    G  I  N 
Sbjct: 6   NHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNE 47

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 3sku_E* 2l7j_A Length = 331

 Score =  119 bits (299), Expect = 2e-31
 Identities = 48/314 (15%), Positives = 92/314 (29%), Gaps = 75/314 (23%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLRE----YKVAWVKMITQTILSIHHKVVTQNKRV 77
            +  +   ++   +G + ++ C   N        +V W K    +  ++     +    V
Sbjct: 15  SQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSV 74

Query: 78  SITFNDHRSWF--------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLD 129
              + +   +         + L  ++  D G Y+C+  T P  +++  L + V  +    
Sbjct: 75  LAPYRERVEFLRPSFTDGTIRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNW 134

Query: 130 RTSTDVVVR-----EGTEVTLEC-SAVGYPEPYVAW------------------------ 159
              T  V+R     +   +   C SA G P   V+W                        
Sbjct: 135 IEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQEIRNPNGTVTVIS 194

Query: 160 -------RREDGK-----AINYNGE---------LVPPMLTI-PNQLEGAFVSQTVELHC 197
                  R    +        +               P +TI             V+L C
Sbjct: 195 RYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTC 254

Query: 198 HTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
             +A P +  Y WT   G +    +    +                I     G+Y C A 
Sbjct: 255 KADANPPATEYHWTTLNGSLPKGVEAQNRTLFF----------KGPINYSLAGTYICEAT 304

Query: 257 NALGETDGFIKVYV 270
           N +G   G ++V +
Sbjct: 305 NPIGTRSGQVEVNI 318

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens} Length = 145

 Score =  111 bits (277), Expect = 2e-30
 Identities = 20/105 (19%), Positives = 42/105 (40%), Gaps = 1/105 (0%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
                   ++ T   G   ++ C V++  +  + W     Q  L    K   ++ R+ + 
Sbjct: 38  QDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQ-TLYFGEKRALRDNRIQLV 96

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPR 125
            +      + + +V   D G Y C I T+P+ + K  + V+  P+
Sbjct: 97  TSTPHELSISISNVALADEGEYTCSIFTMPVRTAKSLVTVLGIPQ 141

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score =  115 bits (288), Expect = 3e-30
 Identities = 45/297 (15%), Positives = 75/297 (25%), Gaps = 70/297 (23%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P     V  +    G    + CV        V W    +                    +
Sbjct: 5   PVIEPSVPELVVKPGATVTLRCVGNG----SVEWDGPPSPHW---------------TLY 45

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           +D  S  L   +    + G Y C         S   +L V  P R      + +VVV E 
Sbjct: 46  SDGSSSILSTNNATFQNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWN-VLAQEVVVFED 104

Query: 141 TEVTLECSAVGY-PEPYVAWRREDGKAINYNGELV------------------------- 174
            +  L C       E  V+  R  G+ +  +                             
Sbjct: 105 QDALLPCLLTDPVLEAGVSLVRVRGRPLMRHTNYSFSPWHGFTIHRAKFIQSQDYQCSAL 164

Query: 175 ---------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
                                PP LT+          +  ++ C   +   + + +    
Sbjct: 165 MGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHN 224

Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
              +            N Y   +TL +  +     G+Y CVA N  G+    +   V
Sbjct: 225 NTKLAIPQQS--DFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRV 279

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 50.7 bits (121), Expect = 2e-07
 Identities = 16/106 (15%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P      A +    G+ A + C   ++      +++     +          N       
Sbjct: 187 PALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFLQHNNTKLAIPQQSDFHNN------- 239

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
              +   L+L  V     G Y C   N     S   + +VV     
Sbjct: 240 RYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESAGN 285

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens} Length = 292

 Score = 45.0 bits (106), Expect = 1e-05
 Identities = 28/227 (12%), Positives = 43/227 (18%), Gaps = 85/227 (37%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVG------YPEPYVAWRREDG----------- 164
             P I    +  ++VV+ G  VTL C   G       P P+     +             
Sbjct: 3   SIPVIE--PSVPELVVKPGATVTLRCVGNGSVEWDGPPSPHWTLYSDGSSSILSTNNATF 60

Query: 165 --------KAINYNGELV----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206
                                            +  Q    F  Q   L C         
Sbjct: 61  QNTGTYRCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTDPVLEA 120

Query: 207 NY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265
                  +G  ++   +Y                                          
Sbjct: 121 GVSLVRVRGRPLMRHTNYS----------------------------------------- 139

Query: 266 IKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                       F I +   +    Y C A  G    +S  I + V 
Sbjct: 140 ------FSPWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQ 180

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score =  114 bits (287), Expect = 4e-30
 Identities = 50/298 (16%), Positives = 94/298 (31%), Gaps = 67/298 (22%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           + +    ++ V  +VG+     C      E  + W     + I+S         +RV + 
Sbjct: 4   LLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIIS--------TQRVVVQ 54

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMT-SQKGYLQVVVPPRILLDRTSTDVVVR 138
               RS  L + +    D G Y CQ  +    T      L++            +    +
Sbjct: 55  KEGVRS-RLTIYNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFR--EVVSPQEFK 111

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGK---------AINYNGEL---------------- 173
           +G +  + C     P P V+W   + +         A+  N  L                
Sbjct: 112 QGEDAEVVCRVSSSPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCE 171

Query: 174 -------------------VPPMLTIPNQLE--GAFVSQTVELHCHTEAFPASLNYWTNE 212
                              VPP +++P +     A   + +   C     P     W   
Sbjct: 172 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF-- 229

Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           +   +I  ++     ++ G +    L +R+I++   G Y C A N  GE +    + V
Sbjct: 230 RNGKLIEENEK---YILKGSNT--ELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQV 282

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 55.6 bits (134), Expect = 4e-09
 Identities = 22/111 (19%), Positives = 46/111 (41%), Gaps = 13/111 (11%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
             P      +   N TA  G+E   +C      E  ++W +         + K++ +N++
Sbjct: 190 NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEK 240

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
             +  ++     L +R++  +D G Y+C+  N      ++ +LQV V    
Sbjct: 241 YILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHHH 288

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens} Length = 291

 Score = 52.5 bits (126), Expect = 4e-08
 Identities = 28/244 (11%), Positives = 58/244 (23%), Gaps = 110/244 (45%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
           +   ++    + + V +  G      C+A+G PE  + W    G+ I             
Sbjct: 2   MALLQVT--ISLSKVELSVGESKFFTCTAIGEPES-IDWYNPQGEKI------------- 45

Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
                                  ++      ++G                       L I
Sbjct: 46  ----------------------ISTQRVVVQKEGV-------------------RSRLTI 64

Query: 241 RSILSHQFGSYRCVAVNALGETD---GFIKVYV--------------------------- 270
            +      G YRC A +A G+T      +++Y                            
Sbjct: 65  YNANIEDAGIYRCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSS 124

Query: 271 -----------------------NLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI 307
                                   ++  +  QI  +++   G Y C         +  R 
Sbjct: 125 SPAPAVSWLYHNEEVTTISDNRFAMLANNNLQILNINKSDEGIYRCEGRVEARGEIDFRD 184

Query: 308 MVTV 311
           ++ +
Sbjct: 185 IIVI 188

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A Length = 222

 Score =  110 bits (277), Expect = 2e-29
 Identities = 31/155 (20%), Positives = 53/155 (34%), Gaps = 15/155 (9%)

Query: 27  PVANVTATVGKEALMACVV-----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
           P        G    + C        +L    V W       I  +H +   + +      
Sbjct: 7   PKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQ 66

Query: 76  RVSITFND--HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
           R  +  +     +  L + DV+  D G Y C I+      ++  ++V  P   +      
Sbjct: 67  RARLLKDQLSLGNAALQITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKI--NQRI 124

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN 168
            VV    +E  L C A GYP+  V W   D + ++
Sbjct: 125 LVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVLS 159

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  114 bits (287), Expect = 1e-28
 Identities = 60/394 (15%), Positives = 101/394 (25%), Gaps = 117/394 (29%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
           E    P F     +V   +G+     C V      K+ W K          ++ +     
Sbjct: 193 EHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKD---------NREIRPGGN 243

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDV 135
             +T  ++ +  L +  V + D G Y C   N     S    L V  PPR +  +     
Sbjct: 244 YKMTLVENTAT-LTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFI-KKLEPSR 301

Query: 136 VVREGTEVTLECSAVGYPEPYVAWRREDGK------------------------------ 165
           +V++      EC   G PE  V W + D                                
Sbjct: 302 IVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSFVESVAVLEMYNLSVEDSG 360

Query: 166 -----AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTN 211
                A N  G            PP+               V L C  +  P     W  
Sbjct: 361 DYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK 420

Query: 212 EKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
           +    + +G  Y    +   +    ++ I ++ S   G Y+C A N +G       + + 
Sbjct: 421 D-KRELRSGKKY--KIMSENFLT--SIHILNVDSADIGEYQCKASNDVGSDTCVGSITLK 475

Query: 272 ------------------------LVDGD------------------------------I 277
                                    ++G                                
Sbjct: 476 APPRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKDKGEIVRESDNIWISYSENIAT 535

Query: 278 FQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
            Q  +    + G Y C   N    +      ++V
Sbjct: 536 LQFSRAEPANAGKYTCQIKN-EAGTQECFATLSV 568

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score =  107 bits (270), Expect = 2e-26
 Identities = 55/392 (14%), Positives = 97/392 (24%), Gaps = 119/392 (30%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P FA  + +V  T+G      C +      +V+W K           +++  +  +  +F
Sbjct: 102 PSFARKLKDVHETLGFPVAFECRINGSEPLQVSWYK---------DGELLKDDANLQTSF 152

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV---VPPRILLDRTSTDVVV 137
             H    L +    ++  G Y C   N +   S    L +    VPP          V +
Sbjct: 153 -IHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFD--LKPVSVDL 209

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDG----------KAINYNGEL-------------- 173
             G   T +C   G     + W +++             +     L              
Sbjct: 210 ALGESGTFKCHVTGTAPIKITWAKDNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYT 269

Query: 174 -------------------VPPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
                               PP               +     C     P     W  + 
Sbjct: 270 CYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKD- 328

Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-- 271
              I     +  S + +       L++ ++     G Y C A NA G       + V   
Sbjct: 329 ETEIQESSKFRMSFVESVA----VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEP 384

Query: 272 -------------------------------------------------LVDGDIF--QI 280
                                                            + +  +    I
Sbjct: 385 PVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKDKRELRSGKKYKIMSENFLTSIHI 444

Query: 281 RKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
             +    +G Y C ASN  V S +    +T+ 
Sbjct: 445 LNVDSADIGEYQCKASND-VGSDTCVGSITLK 475

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 93.7 bits (233), Expect = 2e-21
 Identities = 59/300 (19%), Positives = 96/300 (32%), Gaps = 69/300 (23%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F EP+ +V A +G+   + C V+   E ++AW K          H  +       + F
Sbjct: 6   PYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYK---------EHTKLRSAPAYKMQF 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV---VVPPRILLDRTSTDVVV 137
            ++ +  L +  V  +D G Y C+  N+V   +    L +    +PP     R   DV  
Sbjct: 57  KNNVA-SLVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFA--RKLKDVHE 113

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM------LTIPN--------- 182
             G  V  EC   G     V+W + DG+ +  +  L          L I           
Sbjct: 114 TLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANLQTSFIHNVATLQILQTDQSHVGQY 172

Query: 183 --------------------------QLEGAFVSQTV------ELHCHTEAFPASLNYWT 210
                                       +   VS  +         CH          W 
Sbjct: 173 NCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWA 232

Query: 211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +    I  G +Y+ + + N      TL +  +     G Y C A N  G+     ++ V
Sbjct: 233 KD-NREIRPGGNYKMTLVENTA----TLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGV 287

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 70.6 bits (173), Expect = 1e-13
 Identities = 36/195 (18%), Positives = 55/195 (28%), Gaps = 53/195 (27%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------------ 164
           PP  +       V    G  +TL+C   G PE  +AW +E                    
Sbjct: 5   PPYFI--EPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTKLRSAPAYKMQFKNNVAS 62

Query: 165 ----------------KAINYNGE------------LVPPMLTIPNQLEGAFVSQTVELH 196
                           KA N  G              +PP      +     +   V   
Sbjct: 63  LVINKVDHSDVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARKLKDVHETLGFPVAFE 122

Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
           C           W  + G+++    + + S + N      TL+I        G Y C A 
Sbjct: 123 CRINGSEPLQVSWYKD-GELLKDDANLQTSFIHNVA----TLQILQTDQSHVGQYNCSAS 177

Query: 257 NALGETDGFIKVYVN 271
           N LG      K+ ++
Sbjct: 178 NPLGTASSSAKLTLS 192

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus} Length = 570

 Score = 51.3 bits (123), Expect = 2e-07
 Identities = 22/101 (21%), Positives = 45/101 (44%), Gaps = 10/101 (9%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRF + +++++  VG+E  +   +E      VAW K           ++V ++  + I++
Sbjct: 478 PRFVKKLSDISTVVGEEVQLQATIEGAEPISVAWFKD--------KGEIVRESDNIWISY 529

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
           +++ +  L     +  + G Y CQI N          L V+
Sbjct: 530 SENIA-TLQFSRAEPANAGKYTCQIKNEAGTQECFATLSVL 569

>1nn8_R CD155 antigen, poliovirus receptor; icosahedral virus, picornavirus, virus/receptor complex; 15.00A {Homo sapiens} SCOP: i.6.1.1 PDB: 1dgi_R Length = 302

 Score =  110 bits (275), Expect = 2e-28
 Identities = 44/307 (14%), Positives = 76/307 (24%), Gaps = 79/307 (25%)

Query: 30  NVTATVGKEALMACVVEN-----LREYKVAWVK----MITQTILSIHHKVVTQNKRVSIT 80
            V   +G    + C ++          ++ W +                  +++KR+   
Sbjct: 9   QVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFV 68

Query: 81  FNDHRSWF----LHLRDVQETDRGWYMCQINTVP--MTSQKGYLQVVVPPRILLDRTSTD 134
                +      L +  ++  D G Y C   T P    S   +L+V+  P+         
Sbjct: 69  AARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTA--EVQK 126

Query: 135 VVVREGTEVTLEC-SAVGYPEPYVAWRREDG----------------------------- 164
           V +         C S  G P   + W  + G                             
Sbjct: 127 VQLTGEPVPMARCVSTGGRPPAQITWHSDLGGMPNTSQVPGFLSGTVTVTSLWILVPSSQ 186

Query: 165 --------KAINYNGE-----------LVPPMLTI-PNQLEGAFVSQTVELHCHTEAFPA 204
                   K  + + E             PP ++I               L C   + P 
Sbjct: 187 VDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPE 246

Query: 205 SLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD 263
              Y W+       +                   L IR +      +  C   NALG   
Sbjct: 247 PTGYNWS--TTMGPLPPFAVAQGA---------QLLIRPVDKPINTTLICNVTNALGARQ 295

Query: 264 GFIKVYV 270
             + V V
Sbjct: 296 AELTVQV 302

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  111 bits (280), Expect = 1e-27
 Identities = 68/401 (16%), Positives = 111/401 (27%), Gaps = 121/401 (30%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
            + D P   +     T   G    + CV       +++W             K +  N R
Sbjct: 425 GRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWEL---------DGKKIANNDR 475

Query: 77  VSI----TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRT 131
             +    T N     +L++  V   D G Y C   + V +      L V   P I   R 
Sbjct: 476 YQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYI---RQ 532

Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------AINYNGELV---------- 174
                +  G  + + C   GYP   + W R++          +  NG L+          
Sbjct: 533 MEKKAIVAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQ 592

Query: 175 --------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN- 207
                                     P ++    +   A V Q + LHC        LN 
Sbjct: 593 ATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNI 652

Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267
            WT       I+ D    +  +        L I ++ +   G++ C A N  G       
Sbjct: 653 DWT--LDGQAISEDLGITTSRVGRRGS--VLTIEAVEASHAGNFTCHARNLAGHQQFTTP 708

Query: 268 VYV-----------------------------------------NLVDGDIFQIRKMSRL 286
           + V                                             G+   ++K   +
Sbjct: 709 LNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKKAVGDTPGEYKDLKKSDNI 768

Query: 287 HM---------------GAYLCIASNGVVPSVSHRIMVTVH 312
            +               G YLC A NG+   +S  IM++V 
Sbjct: 769 RVEEGTLHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQ 809

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score =  105 bits (263), Expect = 2e-25
 Identities = 70/378 (18%), Positives = 106/378 (28%), Gaps = 101/378 (26%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
                   T +      + C  +        W K I  T       +  + K+VS T   
Sbjct: 251 SLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGT--- 307

Query: 84  HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTE 142
                L ++D    D G Y+C + N+V   S +  L V  P             V  G  
Sbjct: 308 -----LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQTVDFGRP 360

Query: 143 VTLECSAVGYPEPYVAWRREDGKAINY-NGELV--------------------------- 174
               C   G P   V+W + DGKAI +    L                            
Sbjct: 361 AVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIESVKKEDKGMYQCFVRNDRESAEASA 419

Query: 175 ---------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED 225
                    PP++    Q E      +V L C     P     W  + G  I   D Y+ 
Sbjct: 420 ELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANNDRYQV 478

Query: 226 SRLINGYSCHM-TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN------------- 271
            + +      +  L I S+ ++  G Y+C+A + +G  +   K+ V              
Sbjct: 479 GQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQMEKKAI 538

Query: 272 ----------LVDGD---------------------IFQ-----IRKMSRLH-MGAYLCI 294
                      V G                      +F      I  + R      Y C+
Sbjct: 539 VAGETLIVTCPVAGYPIDSIVWERDNRALPINRKQKVFPNGTLIIENVERNSDQATYTCV 598

Query: 295 ASNGVVPSVSHRIMVTVH 312
           A N    S    + V V 
Sbjct: 599 AKNQEGYSARGSLEVQVM 616

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 90.4 bits (224), Expect = 3e-20
 Identities = 41/310 (13%), Positives = 72/310 (23%), Gaps = 84/310 (27%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRV 77
              +   V       G  A++ C++ +        V+W     +            + + 
Sbjct: 138 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAE----YDGKY 193

Query: 78  SITFNDHRSWFLHLRDVQETD-RGWYMC-----------QINTVPMTSQKGYLQVVVPPR 125
            +  +      LH+R+V   D    Y C              T         +   VP  
Sbjct: 194 LVLPSGE----LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKV 249

Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------------------- 165
           + L +          + + L C A GYP P   W +                        
Sbjct: 250 VSLAKFDM-KTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSGTL 308

Query: 166 ----------------AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTE 200
                             N  G            P    I    +     +     C   
Sbjct: 309 IIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYT 368

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
             P     W  + G  I   +                L+I S+     G Y+C   N   
Sbjct: 369 GNPIKTVSWMKD-GKAIGHSES--------------VLRIESVKKEDKGMYQCFVRNDRE 413

Query: 261 ETDGFIKVYV 270
             +   ++ +
Sbjct: 414 SAEASAELKL 423

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 77.7 bits (191), Expect = 5e-16
 Identities = 47/313 (15%), Positives = 84/313 (26%), Gaps = 73/313 (23%)

Query: 22  PRF-AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P F  EP   +  +    A + C        ++ W++     +  +       +    + 
Sbjct: 39  PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDG-KLV 97

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
           F      F      QE     Y C   N    + S+  +++ VV      D       V 
Sbjct: 98  FPP----FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVN--KEHVI 151

Query: 139 EGTEVTLEC---SAVGYPEPYVAWRREDGK------------AINYNGELV--------- 174
            G    ++C   S V      V+W  ++ +             +  +GEL          
Sbjct: 152 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 211

Query: 175 -----------------------------PPMLTIPNQLEGAFVS-------QTVELHCH 198
                                        P    +P  +  A           T+ L C 
Sbjct: 212 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSAVPKVVSLAKFDMKTYSGSSTMALLCP 271

Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
            + +P  +  W               + R+        TL I+  +    G Y CV  N+
Sbjct: 272 AQGYPVPVFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVEDSGKYLCVVNNS 328

Query: 259 LGETDGFIKVYVN 271
           +G       + V 
Sbjct: 329 VGGESVETVLTVT 341

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 75.7 bits (186), Expect = 2e-15
 Identities = 34/247 (13%), Positives = 62/247 (25%), Gaps = 66/247 (26%)

Query: 89  LHLRDVQETDRGWYMCQ---INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
           +++ + +      +             +          P  L + T+  +     T   +
Sbjct: 1   MNMPNERLKWLMLFAAVALIACGSQTLAANPPDADQKGPVFLKEPTNR-IDFSNSTGAEI 59

Query: 146 ECSAVGYPEPYVAWRREDGKAINY---------NGELV---------------------- 174
           EC A G P P + W R DG A+           +G+LV                      
Sbjct: 60  ECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGKLVFPPFRAEDYRQEVHAQVYACLA 119

Query: 175 ------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN---YWTNEK 213
                                       E      +  + C   +F A       W  + 
Sbjct: 120 RNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD- 178

Query: 214 GDMIITGDDYEDSRLI---NGYSCHMTLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVY 269
            +         D + +   +G      L IR +     + SY+C   + L          
Sbjct: 179 EEENYFPGAEYDGKYLVLPSG-----ELHIREVGPEDGYKSYQCRTKHRLTGETRLSATK 233

Query: 270 VNLVDGD 276
             LV  +
Sbjct: 234 GRLVITE 240

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster} Length = 816

 Score = 50.3 bits (120), Expect = 5e-07
 Identities = 18/105 (17%), Positives = 40/105 (38%), Gaps = 9/105 (8%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PR+     +     G +A + C  +   + +V W K          +K + ++  + +  
Sbjct: 715 PRWILEPTDKAFAQGSDAKVECKADGFPKPQVTWKK--AVGDTPGEYKDLKKSDNIRVEE 772

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPP 124
                  LH+ ++Q+T+ G+Y+C+         S    + V    
Sbjct: 773 GT-----LHVDNIQKTNEGYYLCEAINGIGSGLSAVIMISVQAHH 812

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score =  108 bits (272), Expect = 3e-27
 Identities = 59/298 (19%), Positives = 95/298 (31%), Gaps = 65/298 (21%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
             RF     ++TA +G   L+ C V       + W K   Q +       +  + RV + 
Sbjct: 121 PLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKN-QQDL-----NPIPGDSRVVVL 174

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLD----RTSTD 134
            +      L +  +Q  D G Y C   N     T  +  ++++  P +       +  ++
Sbjct: 175 PSGA----LQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSN 230

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDG------------------------------ 164
           V+  EG +  LEC   GYP P   W R +                               
Sbjct: 231 VIAIEGKDAVLECCVSGYPPPSFTWLRGEEVIQLRSKKYSLLGGSNLLISNVTDDDSGTY 290

Query: 165 --KAINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
                  N           LVPP          A+ S  +E  C     P     W    
Sbjct: 291 TCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKN- 349

Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
           GD++I  D ++             L+I  ++    G Y+CVA N  G      ++ V 
Sbjct: 350 GDVVIPSDYFQIVG--GS-----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 89.1 bits (221), Expect = 3e-20
 Identities = 55/398 (13%), Positives = 96/398 (24%), Gaps = 126/398 (31%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
             F    ++     G   L+ C  E +     + W K            +          
Sbjct: 22  LHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKD--------GLILALGMDDRKQQ 73

Query: 81  FNDHRSWFLHLR--DVQETDRGWYMC--QINTV-PMTSQKGYLQVVVPPRILLDRTSTDV 135
             +      ++      + D G Y C   +     + S+   + V  P R L    +  +
Sbjct: 74  LPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFL--SQTESI 131

Query: 136 VVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-----------NGELV---------- 174
               G  V L+C  +G P P + W++ + + +N            +G L           
Sbjct: 132 TAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDLNPIPGDSRVVVLPSGALQISRLQPGDSG 190

Query: 175 ------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA 204
                                                     A   +   L C    +P 
Sbjct: 191 VYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPP 250

Query: 205 SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
               W   +G+ +I     + S L         L I ++     G+Y CV          
Sbjct: 251 PSFTWL--RGEEVIQLRSKKYSLLGGS-----NLLISNVTDDDSGTYTCVVTYKNENISA 303

Query: 265 FIKVYVN------------------------------------------LVDGDIFQIRK 282
             ++ V                                           ++  D FQI  
Sbjct: 304 SAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMKNGDVVIPSDYFQIVG 363

Query: 283 MSRL--------HMGAYLCIASNGVVPSVSHRIMVTVH 312
            S L          G Y C+A N    +      + V 
Sbjct: 364 GSNLRILGVVKSDEGFYQCVAENE-AGNAQSSAQLIVP 400

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 65.2 bits (159), Expect = 4e-12
 Identities = 34/208 (16%), Positives = 56/208 (26%), Gaps = 63/208 (30%)

Query: 107 NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGK 165
           + +  +    +         +     +D V   G  V L CSA      P + W++ DG 
Sbjct: 5   SELESSHHHHHHGGRRSLHFV--SEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKK-DGL 61

Query: 166 AINY----------NGELV----------------------------------------P 175
            +            NG L+                                        P
Sbjct: 62  ILALGMDDRKQQLPNGSLLIQNILHSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGP 121

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI--NGYS 233
                  +   AF+  TV L C     P    +W  +K    +     +   ++  +G  
Sbjct: 122 LRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHW--QKNQQDLNPIPGDSRVVVLPSG-- 177

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGE 261
               L+I  +     G YRC A N    
Sbjct: 178 ---ALQISRLQPGDSGVYRCSARNPAST 202

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus} Length = 403

 Score = 48.7 bits (116), Expect = 1e-06
 Identities = 22/103 (21%), Positives = 33/103 (32%), Gaps = 14/103 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F    +N+ A    +    C V       V W+K         +  VV  +    I  
Sbjct: 313 PWFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK---------NGDVVIPSDYFQIVG 363

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVP 123
             +    L +  V ++D G+Y C   N          L V  P
Sbjct: 364 GSN----LRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP 402

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score =  110 bits (275), Expect = 5e-27
 Identities = 56/377 (14%), Positives = 95/377 (25%), Gaps = 107/377 (28%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
                F     +          + C  E  +     W           +++ +  + R+ 
Sbjct: 287 EPPKPFITSNNSNPVEDEDAVALTCEPEI-QNTTYLWWV---------NNQSLPVSPRLQ 336

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
           ++ ++     L L  V   D G Y C I N +    S    L V+  P       S    
Sbjct: 337 LSNDNRT---LTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPS-YTY 392

Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL----------------------- 173
            R G  ++L C A   P    +W   DG    +  EL                       
Sbjct: 393 YRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQELFISNITEKNSGLYTCQANNSASG 451

Query: 174 --------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT 219
                         +P      N  +       V   C  EA   +  +W N  G  +  
Sbjct: 452 HSRTTVKTITVSAELPKPSISSNNSKPVEDKDAVAFTCEPEAQNTTYLWWVN--GQSLPV 509

Query: 220 GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE-----------------T 262
               + S   N      TL + ++  +   +Y C   N++                    
Sbjct: 510 SPRLQLS-NGNR-----TLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPI 563

Query: 263 DGFIKVYVNL---------VDGD------------------IFQIRKMSRLHMGAYLCIA 295
                                 +                  +  I K++  + G Y C  
Sbjct: 564 ISPPDSSYLSGANLNLSCHSASNPSPQYSWRINGIPQQHTQVLFIAKITPNNNGTYACFV 623

Query: 296 SNGV-VPSVSHRIMVTV 311
           SN     + S    +TV
Sbjct: 624 SNLATGRNNSIVKSITV 640

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 92.7 bits (230), Expect = 4e-21
 Identities = 54/374 (14%), Positives = 84/374 (22%), Gaps = 107/374 (28%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
                   +            C  E  ++    W        +S   ++   N+      
Sbjct: 112 KPSISSNNSKPVEDKDAVAFTCEPET-QDATYLWWVNNQSLPVSPRLQLSNGNR------ 164

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
                  L L +V   D   Y C+  N V    S    L V+  P      +  +   R 
Sbjct: 165 ------TLTLFNVTRNDTASYKCETQNPVSARRSDSVILNVLYGPDAPTI-SPLNTSYRS 217

Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------- 174
           G  + L C A   P    +W   +G       EL                          
Sbjct: 218 GENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNITVNNSGSYTCQAHNSDTGLNR 276

Query: 175 ------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD 222
                       P      N          V L C  E    +  +W N     +     
Sbjct: 277 TTVTTITVYAEPPKPFITSNNSNPVEDEDAVALTCEPEIQNTTYLWWVN--NQSLPVSPR 334

Query: 223 YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD-GFIKVYVN---------- 271
            + S   N      TL + S+  +  G Y C   N L       + + V           
Sbjct: 335 LQLSN-DNR-----TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISP 388

Query: 272 ---------------------------------LVDGDIFQIRKMSRLHMGAYLCIASNG 298
                                                    I  ++  + G Y C A+N 
Sbjct: 389 SYTYYRPGVNLSLSCHAASNPPAQYSWLIDGNIQQHTQELFISNITEKNSGLYTCQANN- 447

Query: 299 VVPSVSHRIMVTVH 312
                S   + T+ 
Sbjct: 448 SASGHSRTTVKTIT 461

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 80.8 bits (199), Expect = 4e-17
 Identities = 42/298 (14%), Positives = 81/298 (27%), Gaps = 69/298 (23%)

Query: 26  EPVANVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSITFND 83
           E         GKE L+         +  +W K   +      I + + TQ       ++ 
Sbjct: 5   EST-PFNVAEGKEVLLLVHNLPQHLFGYSWYKGERVDGNRQIIGYVIGTQQATPGPAYSG 63

Query: 84  HRSWF----LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVV 136
               +    L ++++ + D G+Y   +    + +++   Q  V    P+  +  ++    
Sbjct: 64  REIIYPNASLLIQNIIQNDTGFYTLHVIKSDLVNEEATGQFRVYPELPKPSI-SSNNSKP 122

Query: 137 VREGTEVTLECSAVGYPEPYVAW--------------------------RREDG-----K 165
           V +   V   C        Y+ W                           R D      +
Sbjct: 123 VEDKDAVAFTCEPETQDATYLWWVNNQSLPVSPRLQLSNGNRTLTLFNVTRNDTASYKCE 182

Query: 166 AINYNGELV-----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG 214
             N                 P   TI          + + L CH  + P +   W     
Sbjct: 183 TQNPVSARRSDSVILNVLYGPDAPTISPLNTSYRSGENLNLSCHAASNPPAQYSW----- 237

Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
                   + +            L I +I  +  GSY C A N+    +      + +
Sbjct: 238 --------FVNGTFQQSTQ---ELFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITV 284

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A Length = 642

 Score = 70.8 bits (173), Expect = 8e-14
 Identities = 39/310 (12%), Positives = 70/310 (22%), Gaps = 82/310 (26%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
                   N +   G+   ++C   +    + +W                        T 
Sbjct: 204 DAPTISPLNTSYRSGENLNLSCHAASNPPAQYSWFV---------------NGTFQQSTQ 248

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKG--YLQVVVPPRILLDRTSTDVVVR 138
                  L + ++   + G Y CQ  N+    ++     + V   P      ++    V 
Sbjct: 249 E------LFIPNITVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITSNNSNPVE 302

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDG-------KAINYNGELV----------------- 174
           +   V L C        Y+ W            +  N N  L                  
Sbjct: 303 DEDAVALTCEPEIQNTTYLWWVNNQSLPVSPRLQLSNDNRTLTLLSVTRNDVGPYECGIQ 362

Query: 175 ------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDM 216
                             P   TI            + L CH  + P +   W  + G++
Sbjct: 363 NELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQYSWLID-GNI 421

Query: 217 IITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD 276
                                L I +I     G Y C A N+           + +    
Sbjct: 422 QQHTQ---------------ELFISNITEKNSGLYTCQANNSASGHSRTTVKTITVSAEL 466

Query: 277 IFQIRKMSRL 286
                  +  
Sbjct: 467 PKPSISSNNS 476

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score =  105 bits (262), Expect = 1e-26
 Identities = 43/302 (14%), Positives = 77/302 (25%), Gaps = 75/302 (24%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           P  P      + +    G    + C+  +     V W                   K   
Sbjct: 10  PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTF-----------------KTYF 48

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
               +++         + T  G Y C  +    +S   Y+ V  P ++ L      +  +
Sbjct: 49  NEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSSI--YVFVRDPAKLFL--VGLPLFGK 104

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV------------------------ 174
           E ++  + C          +    DGK++  +   V                        
Sbjct: 105 EDSDALVRCPLTDPQVSQYSLIECDGKSLPTDLTFVPNPKAGITIKNVKRAYHRLCVRCA 164

Query: 175 -----------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WT 210
                                   P++++P          T  + C  +    S+N  W 
Sbjct: 165 AQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWL 224

Query: 211 --NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
             N +   I         R    Y    TL I S      G + C A N  G  +    +
Sbjct: 225 KMNPQPQHIAQVKHNSWHRGDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTL 284

Query: 269 YV 270
            V
Sbjct: 285 KV 286

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 48.6 bits (115), Expect = 9e-07
 Identities = 22/186 (11%), Positives = 43/186 (23%), Gaps = 48/186 (25%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG---KAINYNGELV----- 174
           PP I      ++++V  G  ++L C        +V W  +        N   E +     
Sbjct: 12  PPSI--HPAQSELIVEAGDTLSLTCID----PDFVRWTFKTYFNEMVENKKNEWIQEKAE 65

Query: 175 -------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                    P  L +              + C       S    
Sbjct: 66  ATRTGTYTCSNSNGLTSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTDPQVSQYSL 125

Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSYRCVAVNALGETD-GFIK 267
               G  + T   +         +    + I+++  ++     RC A             
Sbjct: 126 IECDGKSLPTDLTFV-------PNPKAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFT 178

Query: 268 VYVNLV 273
           + V   
Sbjct: 179 LKVREA 184

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus} Length = 290

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 24/102 (23%), Positives = 37/102 (36%), Gaps = 5/102 (4%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P  + P  +     G    + C ++++       W+KM  Q     H   V  N      
Sbjct: 189 PVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLKMNPQPQ---HIAQVKHNSWHRGD 245

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
           FN  R   L +   +  D G +MC   NT    +    L+VV
Sbjct: 246 FNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVV 287

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score =  101 bits (254), Expect = 2e-26
 Identities = 38/251 (15%), Positives = 64/251 (25%), Gaps = 68/251 (27%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
           PR       +         + C + +         W K                   ++ 
Sbjct: 4   PRIVTSEEVIIRDSLLPVTLQCNLTSSSHTLMYSYWTK---------------NGVELTA 48

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
           T  +  +    +   +  D G Y C  + V        ++V   P I            E
Sbjct: 49  TRKNASNMEYRINKPRAEDSGEYHCVYHFVSAPKANATIEVKAAPDIT--GHKRSENKNE 106

Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
           G +  + C +VGYP P   WR+++             +    +   G F           
Sbjct: 107 GQDAMMYCKSVGYPHPEWMWRKKEN-----------GVFEEISNSSGRF-------FIIN 148

Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
           +     LN         I+     ED                       G Y C A N++
Sbjct: 149 KENYTELN---------IVNLQITEDP----------------------GEYECNATNSI 177

Query: 260 GETDGFIKVYV 270
           G       + V
Sbjct: 178 GSASVSTVLRV 188

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus} Length = 190

 Score = 45.2 bits (107), Expect = 6e-06
 Identities = 23/103 (22%), Positives = 37/103 (35%), Gaps = 7/103 (6%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P       +     G++A+M C        +  W K        I +     + R  I  
Sbjct: 93  PDITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEEISN----SSGRFFII- 147

Query: 82  NDHRSWFLHLRDVQET-DRGWYMCQ-INTVPMTSQKGYLQVVV 122
           N      L++ ++Q T D G Y C   N++   S    L+V V
Sbjct: 148 NKENYTELNIVNLQITEDPGEYECNATNSIGSASVSTVLRVRV 190

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score =  101 bits (254), Expect = 3e-26
 Identities = 39/250 (15%), Positives = 73/250 (29%), Gaps = 64/250 (25%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
            +     +    +VG+     C V  + ++  ++W     + +           +R+S+ 
Sbjct: 3   LQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSP-------NQQRISVV 55

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           +ND  S  L + +    D G Y C +     T  +  + V +  +++     T    +EG
Sbjct: 56  WNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEG 115

Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE 200
            +  + C  V    P + W+ +                                      
Sbjct: 116 EDAVIVCDVVSSLPPTIIWKHK-------------------------------------- 137

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
                        G  +I   D     L N       L+IR I     G+YRC       
Sbjct: 138 -------------GRDVILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRILAR 179

Query: 261 ETDGFIKVYV 270
               F  + V
Sbjct: 180 GEINFKDIQV 189

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A Length = 191

 Score = 47.9 bits (114), Expect = 7e-07
 Identities = 20/102 (19%), Positives = 38/102 (37%), Gaps = 12/102 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
             F           G++A++ C V +     + W       IL        ++ R  +  
Sbjct: 101 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILK-------KDVRFIVLS 153

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
           N++    L +R +++TD G Y C+             +QV+V
Sbjct: 154 NNY----LQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 191

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score =  104 bits (262), Expect = 6e-26
 Identities = 58/303 (19%), Positives = 92/303 (30%), Gaps = 75/303 (24%)

Query: 21  MPRF-AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           +  F     + V+   G+  ++ C       E   AW+           +     N+R  
Sbjct: 101 LENFKTRTRSTVSVRRGQGMVLLCGPPPHSGELSYAWIF--------NEYPSYQDNRRFV 152

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ----INTVPMTSQKGYLQVV-------VPPRIL 127
                +    L++  V+++D G Y C     +    +      L +          P+I 
Sbjct: 153 SQETGN----LYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIE 208

Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI-------NYNGEL------- 173
           + +    V   +GT V LEC A+G P P + WRR DGK I         NG L       
Sbjct: 209 V-QFPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHKSNGILEIPNFQQ 267

Query: 174 --------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN 207
                                       P            + ++V   C     P    
Sbjct: 268 EDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTY 327

Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK 267
            W   K    +   D    ++  G     TL I  +     G Y+CVA N  G      +
Sbjct: 328 RWL--KNGDPLLTRDR--IQIEQG-----TLNITIVNLSDAGMYQCVAENKHGVIFSSAE 378

Query: 268 VYV 270
           + V
Sbjct: 379 LSV 381

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A* Length = 384

 Score = 57.5 bits (139), Expect = 1e-09
 Identities = 26/187 (13%), Positives = 46/187 (24%), Gaps = 55/187 (29%)

Query: 123 PPRILLDRTSTDVVV-REGTEVTLECSAVGYPEPYVAWRREDGKAIN---------YNGE 172
            P  + + +     +  E  +V L C   G P+P++ W+  +G  ++          +G 
Sbjct: 5   GPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKL-NGTDVDIGMDFRYSVVDGS 63

Query: 173 LV------------------------------------PPMLTIPNQLEGAFVSQTVELH 196
           L+                                        T           Q + L 
Sbjct: 64  LLINNPNKTQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRTRSTVSVRRGQGMVLL 123

Query: 197 CH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
           C            W     +     D+        G      L I  +     G+Y CV 
Sbjct: 124 CGPPPHSGELSYAWI--FNEYPSYQDNRRFVSQETG-----NLYIAKVEKSDVGNYTCVV 176

Query: 256 VNALGET 262
            N +   
Sbjct: 177 TNTVTNH 183

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score =  103 bits (259), Expect = 2e-25
 Identities = 40/250 (16%), Positives = 77/250 (30%), Gaps = 60/250 (24%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P   +   N T     +  + C  E     ++ W + +     +   K  + + R+ +  
Sbjct: 2   PHIIQL-KNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDK--SLDGRIEVK- 57

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
             H S  LH++DV+ +D G Y C+  + +    +  YL +   P+ + +   T     EG
Sbjct: 58  GQHGSSSLHIKDVKLSDSGRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEG 115

Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE 200
             + + C     P   + WRR        +  ++P                         
Sbjct: 116 NPINISCDVKSNPPASIHWRR--------DKLVLPA------------------------ 143

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
                         ++                   M L+I     + FG Y C A N +G
Sbjct: 144 ----------KNTTNLKTYSTGR-----------KMILEIAPTSDNDFGRYNCTATNHIG 182

Query: 261 ETDGFIKVYV 270
                  + +
Sbjct: 183 TRFQEYILAL 192

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A Length = 389

 Score = 45.2 bits (107), Expect = 1e-05
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 15/107 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
           P+F        +  G    ++C V++     + W +   ++                 + 
Sbjct: 101 PKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRRDKLVLP----------AKNTTNLK 150

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
                 +   L +    + D G Y C   N +    Q+  L +   P
Sbjct: 151 TYSTGRKMI-LEIAPTSDNDFGRYNCTATNHIGTRFQEYILALADVP 196

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score =  102 bits (255), Expect = 2e-25
 Identities = 39/253 (15%), Positives = 69/253 (27%), Gaps = 66/253 (26%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F E + N+       A + C V    +  V W +   +        ++    +  I  
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKE--------IIADGLKYRIQE 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLD---RTSTDVVV 137
                  L +  V + D   Y  +  N     S    L+V VP +I L         V  
Sbjct: 57  FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
             G  V+++    G P+P + W++          +L+                       
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQK--------GQDLIDN--------------------- 147

Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
                                    Y   ++I   S    +    +     G Y   A N
Sbjct: 148 ----------------------NGHY---QVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 258 ALGETDGFIKVYV 270
             G     +++ V
Sbjct: 183 RFGIDQKTVELDV 195

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 51.7 bits (124), Expect = 8e-08
 Identities = 26/149 (17%), Positives = 36/149 (24%), Gaps = 55/149 (36%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
           + P         ++ VR  +  TL C   G+P+P V W R  GK I  +G          
Sbjct: 3   MAPHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEIIADG---------- 49

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                               I                   L I 
Sbjct: 50  --------------------------------LKYRIQEFKGGYH----------QLIIA 67

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
           S+       Y+  A N  G   G   + V
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASLEV 96

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens} Length = 305

 Score = 50.5 bits (121), Expect = 2e-07
 Identities = 17/108 (15%), Positives = 34/108 (31%), Gaps = 10/108 (9%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           K  +P+  E +  V A  G+   +        +  + W K            ++  N   
Sbjct: 101 KIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK---------GQDLIDNNGHY 151

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
            +      +  +    V+  D G+Y+    N   +  +   L V   P
Sbjct: 152 QVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDVADVP 199

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 98.8 bits (246), Expect = 4e-25
 Identities = 34/167 (20%), Positives = 54/167 (32%), Gaps = 7/167 (4%)

Query: 20  DMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           +   F     N+T   G    + C ++      +V W++   Q +               
Sbjct: 1   EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRD-GQILELADSTQTQVPLGED 59

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
              +      L +  +Q +D G Y C +        SQ GY+ +   P  L      D  
Sbjct: 60  EQDDWIVVSQLRITSLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFL--EEPEDRT 117

Query: 137 VREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPN 182
           V   T   L C A G PEP  + W ++        G      L +P 
Sbjct: 118 VAANTPFNLSCQAQGPPEPVDLLWLQDAVPLATAPGHGPQRSLHVPG 164

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens} Length = 195

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 30/238 (12%), Positives = 54/238 (22%), Gaps = 97/238 (40%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
               +      ++    G   TL C   V    P V W R DG+ +              
Sbjct: 2   ESPFV--GNPGNITGARGLTGTLRCQLQVQGEPPEVHWLR-DGQILE------------- 45

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                        +     +  G+D +D  ++        L+I 
Sbjct: 46  ---------------------------LADSTQTQVPLGEDEQDDWIVVS-----QLRIT 73

Query: 242 SILSHQFGSYRCVAVNALGETD---GFIKVYV-----------NLVDGDIFQIR------ 281
           S+     G Y+C+            G++ +              +     F +       
Sbjct: 74  SLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGP 133

Query: 282 ----------------------KMSRLH------MGAYLCIASNGVVPSVSHRIMVTV 311
                                     LH        ++ C A N    + S    +TV
Sbjct: 134 PEPVDLLWLQDAVPLATAPGHGPQRSLHVPGLNKTSSFSCEAHNAKGVTTSRTATITV 191

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score =  100 bits (251), Expect = 2e-24
 Identities = 54/305 (17%), Positives = 85/305 (27%), Gaps = 73/305 (23%)

Query: 21  MPRFA-EPVANVTATVGKEALMAC-VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
            P +  E +  V    G    + C     L    + W+            + +TQ+KRVS
Sbjct: 115 SPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMS--------SSMEPITQDKRVS 166

Query: 79  ITFNDHRSWFLHLRDVQETD-RGWYMCQ-INTV-PMTSQKGYLQVVV----------PPR 125
              N      L+  +V   D +  Y C           QK    + V          P  
Sbjct: 167 QGHNGD----LYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSF 222

Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG-------KAINYNGEL----- 173
           +    T++  +V  G ++ LEC A G P P +AW ++ G       K  N+N  L     
Sbjct: 223 MYPQGTASSQMVLRGMDLLLECIASGVPTPDIAWYKKGGDLPSDKAKFENFNKALRITNV 282

Query: 174 ----------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPAS 205
                                         P      +       +   L C     P  
Sbjct: 283 SEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKP 342

Query: 206 LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF 265
              W    G+ + +     +  +        T+  R         Y+C   N  G     
Sbjct: 343 TVQWMVN-GEPLQSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNTSNEHGYLLAN 396

Query: 266 IKVYV 270
             V V
Sbjct: 397 AFVSV 401

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A* Length = 404

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 35/200 (17%), Positives = 59/200 (29%), Gaps = 67/200 (33%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN--------- 168
            ++  PP I   +++ D +V     + +EC A G P P   W R + +  N         
Sbjct: 11  NELTQPPTIT-KQSAKDHIVDPRDNILIECEAKGNPAPSFHWTR-NSRFFNIAKDPRVSM 68

Query: 169 --YNGELVPPMLTIPNQLE-------------GAFVS----------------------- 190
              +G LV    +     E             G  +S                       
Sbjct: 69  RRRSGTLVIDFRSGGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVV 128

Query: 191 ---QTVELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLKIRSI 243
                + L C+     P+ + +W +      IT    +D R+    NG      L   ++
Sbjct: 129 QEGAPLTLQCNPPPGLPSPVIFWMSS-SMEPIT----QDKRVSQGHNG-----DLYFSNV 178

Query: 244 LSH-QFGSYRCVAVNALGET 262
           +       Y C A      T
Sbjct: 179 MLQDMQTDYSCNARFHFTHT 198

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 99.7 bits (248), Expect = 1e-23
 Identities = 47/303 (15%), Positives = 80/303 (26%), Gaps = 58/303 (19%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P  +   A+     G+E  + C ++++       W +  +QT L   +            
Sbjct: 212 PVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHG-----D 266

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLD-RTSTDVVVR 138
           FN  R   L +   +  D G +MC   NT    +    L+VV    I +    +T V V 
Sbjct: 267 FNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVN 326

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM-----------LTIPN----- 182
           +G  V L      +P+P         +      E  P             L +       
Sbjct: 327 DGENVDLIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTE 386

Query: 183 --------QLEGAFVSQTVEL-------------------HCHTEAFPASLNYWT----- 210
                          +    +                    C    FP     W      
Sbjct: 387 GGTYTFLVSNSDVNAAIAFNVYVNTKPEILTYDRLVNGMLQCVAAGFPEPTIDWYFCPGT 446

Query: 211 --NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV 268
                  ++       +S         +   I S      G+  C A N +G+T  +   
Sbjct: 447 EQRCSASVLPVDVQTLNSSGPPFGKLVVQSSIDSSAFKHNGTVECKAYNDVGKTSAYFNF 506

Query: 269 YVN 271
              
Sbjct: 507 AFK 509

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 86.3 bits (213), Expect = 5e-19
 Identities = 46/311 (14%), Positives = 88/311 (28%), Gaps = 70/311 (22%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
            D  +      ++      + L+ C + +  E     +K      L    + +   K   
Sbjct: 112 RDPAKLFLVDRSLYGKEDNDTLVRCPLTDP-EVTNYSLKGCQGKPLPKDLRFIPDPKAG- 169

Query: 79  ITFNDHRSWFLHLRDVQET-DRGWYMCQINTVPMTSQKGYLQVVVPPRI----LLDRTST 133
                     + ++ V+    R    C ++    +       + V P      ++  +  
Sbjct: 170 ----------IMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKA 219

Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGK--------------------------- 165
             ++REG E T+ C+           W+RE+ +                           
Sbjct: 220 SYLLREGEEFTVTCTIKDVSSSVYSTWKRENSQTKLQEKYNSWHHGDFNYERQATLTISS 279

Query: 166 ------------AINYNGE---------LVPPMLTI-PNQLEGAFVS--QTVELHCHTEA 201
                       A N  G          +    + I P      FV+  + V+L    EA
Sbjct: 280 ARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEA 339

Query: 202 FPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
           FP   +  W           +DY  S   +       L +  +   + G+Y  +  N+  
Sbjct: 340 FPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDV 399

Query: 261 ETDGFIKVYVN 271
                  VYVN
Sbjct: 400 NAAIAFNVYVN 410

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 75.5 bits (185), Expect = 2e-15
 Identities = 37/299 (12%), Positives = 70/299 (23%), Gaps = 76/299 (25%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P      +++   VG E  + C         V W   I                      
Sbjct: 37  PSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILDETNENKQNE----------- 81

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
                        + T+ G Y C   +     S   Y+ V  P ++ L      +  +E 
Sbjct: 82  -------WITEKAEATNTGKYTCTNKHG---LSNSIYVFVRDPAKLFL--VDRSLYGKED 129

Query: 141 TEVTLECSAVGYPEPYVAWRREDGKAINYNGELV-------------------------- 174
            +  + C          + +   GK +  +   +                          
Sbjct: 130 NDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFIPDPKAGIMIKSVKRAYHRLCLHCSVD 189

Query: 175 ---------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNE 212
                                 P++++          +   + C  +   +S+   W  E
Sbjct: 190 QEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSSSVYSTWKRE 249

Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
                +             Y    TL I S   +  G + C A N  G  +    + V 
Sbjct: 250 NSQTKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVV 308

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 51.6 bits (123), Expect = 1e-07
 Identities = 22/200 (11%), Positives = 48/200 (24%), Gaps = 47/200 (23%)

Query: 98  DRGWYMCQI-----NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
               ++C +          +          PP I      +D++VR G E+ L C+  G+
Sbjct: 6   GAWDFLCVLLLLLRVQTGSSQPSVSPGEPSPPSIHP--GKSDLIVRVGDEIRLLCTDPGF 63

Query: 153 PEPYVAWRREDGKAINYNGELV------------------------------PPMLTIPN 182
            +    +   D    N   E +                              P  L + +
Sbjct: 64  VKWT--FEILDETNENKQNEWITEKAEATNTGKYTCTNKHGLSNSIYVFVRDPAKLFLVD 121

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
           +           + C       +       +G  +     +              + I+S
Sbjct: 122 RSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDLRFI-------PDPKAGIMIKS 174

Query: 243 IL-SHQFGSYRCVAVNALGE 261
           +  ++      C        
Sbjct: 175 VKRAYHRLCLHCSVDQEGKS 194

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A* Length = 524

 Score = 41.6 bits (97), Expect = 2e-04
 Identities = 11/99 (11%), Positives = 23/99 (23%), Gaps = 3/99 (3%)

Query: 31  VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW--F 88
           +T       ++ CV     E  + W              +    + ++ +          
Sbjct: 416 LTYDRLVNGMLQCVAAGFPEPTIDWYFCPGTEQRCSASVLPVDVQTLNSSGPPFGKLVVQ 475

Query: 89  LHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
             +        G   C+  N V  TS           + 
Sbjct: 476 SSIDSSAFKHNGTVECKAYNDVGKTSAYFNFAFKGNNKE 514

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 96.4 bits (240), Expect = 3e-23
 Identities = 51/304 (16%), Positives = 90/304 (29%), Gaps = 76/304 (25%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRF +   +     G  A   C      + +V W K           K V   +  +I F
Sbjct: 7   PRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKK---------GKKVNSQRFETIEF 57

Query: 82  NDHRSWFLHLRDVQ-ETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL-----DRTSTD 134
           ++     L ++ ++   D   Y C   N+V   +    L V+   ++       D     
Sbjct: 58  DESAGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQL 117

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-----------NGEL---------- 173
            VV      T+ C+A G P+P + W + D   ++            +G L          
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFK-DFLPVDPSASNGRIKQLRSGALQIESSEETDQ 176

Query: 174 ---------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASL 206
                                      V P  +I            V + C     P   
Sbjct: 177 GKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY 236

Query: 207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI 266
             W   +G   +T     +  +  G        +         +Y CVA+++LG  +   
Sbjct: 237 VKWM--QGAEDLT----PEDDMPVG-----RNVLELTDVKDSANYTCVAMSSLGVIEAVA 285

Query: 267 KVYV 270
           ++ V
Sbjct: 286 QITV 289

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 57.1 bits (138), Expect = 1e-09
 Identities = 35/194 (18%), Positives = 55/194 (28%), Gaps = 59/194 (30%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK-------------- 165
              PPR +  +   D +   G   +  C A G P+P V W ++  K              
Sbjct: 3   GEEPPRFI--KEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKKVNSQRFETIEFDES 60

Query: 166 ----------------------AINYNGELV----------PPMLTIPNQLEGAFVSQTV 193
                                 A N  GE+             + +    ++     + V
Sbjct: 61  AGAVLRIQPLRTPRDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVV 120

Query: 194 E------LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ 247
           E      + C     P     W   K  + +      + R+    S    L+I S     
Sbjct: 121 ERTRTATMLCAASGNPDPEITWF--KDFLPVDPSA-SNGRIKQLRSG--ALQIESSEETD 175

Query: 248 FGSYRCVAVNALGE 261
            G Y CVA N+ G 
Sbjct: 176 QGKYECVATNSAGV 189

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens} Length = 304

 Score = 45.6 bits (108), Expect = 9e-06
 Identities = 15/111 (13%), Positives = 32/111 (28%), Gaps = 17/111 (15%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
            +   PRF+    +     G    + CV        V W++           + +T    
Sbjct: 201 VQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYVKWMQ---------GAEDLTPEDD 251

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
           + +           L      D   Y C  ++++ +      + V   P+ 
Sbjct: 252 MPVGR-------NVLELTDVKDSANYTCVAMSSLGVIEAVAQITVKSLPKA 295

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 93.7 bits (233), Expect = 3e-23
 Identities = 52/255 (20%), Positives = 95/255 (37%), Gaps = 73/255 (28%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           M  F E V+      G++A + C V +     V+W+    + + +        + R ++ 
Sbjct: 2   MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTT------ISDNRFAML 54

Query: 81  FNDHRSWFLHLRDVQETDRGWYMC--QINTVPMTSQKGYLQVV-VPPRILLDRTSTDVVV 137
            N++    L + ++ ++D G Y C  ++        +  + +V VPP I + + S +   
Sbjct: 55  ANNN----LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATA 110

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
             G E+T  C A G PEP ++W R        NG+L+                       
Sbjct: 111 ERGEEMTFSCRASGSPEPAISWFR--------NGKLIEE--------------------- 141

Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
                              I+ G +               L +R+I++   G Y C A N
Sbjct: 142 ---------------NEKYILKGSNT-------------ELTVRNIINSDGGPYVCRATN 173

Query: 258 ALGETD--GFIKVYV 270
             GE +   F++V+V
Sbjct: 174 KAGEDEKQAFLQVFV 188

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 53.2 bits (128), Expect = 1e-08
 Identities = 27/237 (11%), Positives = 54/237 (22%), Gaps = 98/237 (41%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY----------NGE 172
                     +    ++G +  + C     P P V+W     + +            N  
Sbjct: 2   MLTFR--EVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAMLANNN 58

Query: 173 L-----------------------------------VPPMLTIPNQLE--GAFVSQTVEL 195
           L                                   VPP +++P +     A   + +  
Sbjct: 59  LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTF 118

Query: 196 HCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
            C     P     W   +   +I  ++     ++ G +    L +R+I            
Sbjct: 119 SCRASGSPEPAISWF--RNGKLIEENEK---YILKGSNT--ELTVRNI------------ 159

Query: 256 VNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                                            G Y+C A+N        +  + V 
Sbjct: 160 ----------------------------INSDGGPYVCRATN-KAGEDEKQAFLQVF 187

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens} Length = 189

 Score = 49.4 bits (118), Expect = 2e-07
 Identities = 22/107 (20%), Positives = 46/107 (42%), Gaps = 13/107 (12%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
             P      +   N TA  G+E   +C      E  ++W +         + K++ +N++
Sbjct: 94  NVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR---------NGKLIEENEK 144

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
             +  ++     L +R++  +D G Y+C+  N      ++ +LQV V
Sbjct: 145 YILKGSNTE---LTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFV 188

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 98.2 bits (244), Expect = 4e-23
 Identities = 49/390 (12%), Positives = 87/390 (22%), Gaps = 112/390 (28%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           +P         A V   V     +  +V+        WV           H  +      
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF---------KHSSLNCQPHF 95

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
            +      S  + +  + ET  G Y+  I +     +    + +       L R      
Sbjct: 96  DLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP--YFR 151

Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDG------------------------------KA 166
             E  +  L C +   PEP V W   D                                A
Sbjct: 152 KMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210

Query: 167 INYNGE----------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGD 215
            N  G              P  T+P       V + + + C            W  E   
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLF--LKVGEPLWIRCKAVHVNHGFGLTWELE-NK 267

Query: 216 MIITGDDYEDSRLINGYSCHM--TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV--- 270
            +  G+ +E S      +        + S+  +  G Y C +     ++   + +     
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKGF 326

Query: 271 ----------------------------------------------NLVDGDIFQIRKMS 284
                                                          L +G         
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386

Query: 285 RLHMGAYLCIASNGVVPSVSHRIMVTVHCK 314
           +   G Y+  A N      +    + +  K
Sbjct: 387 KHQPGEYIFHAENDDA-QFTKMFTLNIRRK 415

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 94.4 bits (234), Expect = 9e-22
 Identities = 36/290 (12%), Positives = 75/290 (25%), Gaps = 48/290 (16%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
                  +  +   VG+   + C   ++   + + W          +      +    S 
Sbjct: 227 NQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA----LEEGNYFEMSTYST 282

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
                R  F  +  V   D G+Y C         SQ   + +V    I    +S D  + 
Sbjct: 283 NRTMIRILFAFVSSVARNDTGYYTCSSSKHP---SQSALVTIVEKGFINATNSSEDYEID 339

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP--PMLTIPNQL------------ 184
           +  E         YP+    W     K+     + +     ++                 
Sbjct: 340 QYEEFCFSVRFKAYPQIRCTWTF-SRKSFPCEQKGLDNGYSISKFCNHKHQPGEYIFHAE 398

Query: 185 -EGAFVSQTVEL-----------------HCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
            + A  ++   L                  C ++ +P     W           ++  + 
Sbjct: 399 NDDAQFTKMFTLNIRRKPQVLAEASASQASCFSDGYPLPSWTWKKCSDKSPNCTEEITEG 458

Query: 227 RLINGYSCHM--TLKIRSILSHQ----FGSYRCVAVNALGETDGFIKVYV 270
                 +  +       S L+          +C A N+LG +   I +  
Sbjct: 459 VWNRKANRKVFGQWVSSSTLNMSEAIKGFLVKCCAYNSLGTSCETILLNS 508

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens} Length = 527

 Score = 57.0 bits (137), Expect = 2e-09
 Identities = 25/226 (11%), Positives = 42/226 (18%), Gaps = 67/226 (29%)

Query: 93  DVQETDRGWYMC-----QINTVPMTSQKGYLQVVVPPRILLDRTS----------TDVVV 137
           +    D     C     + N   +     Y  V   P  L                 V V
Sbjct: 1   ETGNQDLPVIKCVLINHKNNDSSVGKSSSYPMVSESPEDLGCALRPQSSGTVYEAAAVEV 60

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDG--------------------------------- 164
                +TL+            W  +                                   
Sbjct: 61  DVSASITLQVLVDAPGNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLL 120

Query: 165 KAINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD 215
              +                 + T+         +Q   L C +E+ P  +  W      
Sbjct: 121 FIQSEATNYTILFTVSIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQ 179

Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
                ++                  + +        RC A N LG 
Sbjct: 180 GESCKEESPAVVKKE---------EKVLHELFGTDIRCCARNELGR 216

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 96.1 bits (239), Expect = 9e-23
 Identities = 48/301 (15%), Positives = 82/301 (27%), Gaps = 71/301 (23%)

Query: 21  MPRF-AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           +  F AE    V  T G   +  C            W+           + +    +R  
Sbjct: 100 LQEFSAEERDPVKITEGWGVMFTCSPPPHYPALSYRWLLN------EFPNFIPADGRRFV 153

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV-----------PPRI 126
                +    L++   + +D G Y C   + +   ++  + +               P I
Sbjct: 154 SQTTGN----LYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSI 209

Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG----KAINYNGEL--------- 173
              +   D     G  VTLEC A G P P + WR+ DG    K ++    L         
Sbjct: 210 KA-KFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKWLSSEPLLHIQNVDFED 268

Query: 174 ------------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
                                     P          A +   +   C     P     W
Sbjct: 269 EGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRW 328

Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY 269
              +    +   +     +  G      L+   ++    G Y+CVA N  G      ++ 
Sbjct: 329 L--RDGQPLASQNR--IEVSGG-----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELT 379

Query: 270 V 270
           V
Sbjct: 380 V 380

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 74.9 bits (184), Expect = 2e-15
 Identities = 43/310 (13%), Positives = 69/310 (22%), Gaps = 84/310 (27%)

Query: 22  PRFAE---PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
           P F E          +  ++  + C           W    T+  +    +         
Sbjct: 5   PVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYRLVAGD-- 62

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVV 136
                     +    V+  D G Y C   N    + S++  L+               V 
Sbjct: 63  ---------LVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFS-AEERDPVK 112

Query: 137 VREGTEVTLECSAV-GYPEPYVAWRREDGK----------AINYNGELV----------- 174
           + EG  V   CS    YP     W   +                 G L            
Sbjct: 113 ITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTGNLYIAKTEASDLGN 172

Query: 175 ----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE 200
                                             P +         A   Q V L C   
Sbjct: 173 YSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLECFAF 232

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
             P     W    G           S+ ++       L I+++     G+Y C A N  G
Sbjct: 233 GNPVPQIKWRKLDGSQT--------SKWLSSEP---LLHIQNVDFEDEGTYECEAENIKG 281

Query: 261 ETDGFIKVYV 270
                 ++ +
Sbjct: 282 RDTYQGRIII 291

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A Length = 382

 Score = 59.1 bits (143), Expect = 5e-10
 Identities = 33/189 (17%), Positives = 47/189 (24%), Gaps = 57/189 (30%)

Query: 123 PPRILLDRTSTDVVVREGTE---VTLECSAVGYPEPYVAWRREDGKAINYNGE----LVP 175
            P           +  EG+    VTL C A   P     W+  +G  +    +    LV 
Sbjct: 4   GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM-NGTELKMGPDSRYRLVA 60

Query: 176 PMLTIPNQLE---------------GAFVS--------------------------QTVE 194
             L I N ++               G  VS                            V 
Sbjct: 61  GDLVISNPVKAKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEERDPVKITEGWGVM 120

Query: 195 LHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
             C     +PA    W   +    I  D         G      L I    +   G+Y C
Sbjct: 121 FTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSC 175

Query: 254 VAVNALGET 262
            A + +   
Sbjct: 176 FATSHIDFI 184

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 92.2 bits (229), Expect = 1e-22
 Identities = 41/174 (23%), Positives = 62/174 (35%), Gaps = 21/174 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
            +       +T + G+   + C VE + E  + WVK            V   ++      
Sbjct: 3   LKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD--------GAVVQNLDQLYIPVS 54

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
             H   FL L+ V+ +D G Y CQ+ +      SQ  +L V   P         D+ V  
Sbjct: 55  EQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFT--VEPKDLAVPP 112

Query: 140 GTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
                L C AVG PEP  + W R            +      P+ L    V+Q+
Sbjct: 113 NAPFQLSCEAVGPPEPVTIVWWR--------GTTKIGGPAPSPSVLNVTGVTQS 158

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 63.7 bits (155), Expect = 2e-12
 Identities = 26/188 (13%), Positives = 43/188 (22%), Gaps = 63/188 (33%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------------ 164
             +++       + V +G  V L CS  G  EP + W ++                    
Sbjct: 2   GLKLM--GAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWI 59

Query: 165 ------------------KAINYNGE----------LVPPMLTIPNQLEGAFVSQTVELH 196
                             +  +                 P  T+  +      +   +L 
Sbjct: 60  GFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLS 119

Query: 197 CHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
           C     P  +   W   +G   I G     S L                  Q   + C A
Sbjct: 120 CEAVGPPEPVTIVW--WRGTTKIGGPAPSPSVL------------NVTGVTQSTMFSCEA 165

Query: 256 VNALGETD 263
            N  G   
Sbjct: 166 HNLKGLAS 173

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 Length = 182

 Score = 39.8 bits (93), Expect = 4e-04
 Identities = 9/54 (16%), Positives = 17/54 (31%)

Query: 259 LGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
           +   D                ++ + R   G Y C   +G    +S  + +TV 
Sbjct: 43  VQNLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTVE 96

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 91.3 bits (227), Expect = 2e-22
 Identities = 35/253 (13%), Positives = 73/253 (28%), Gaps = 70/253 (27%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P   + + +VT  +G+ A ++C +       + W +           K + Q+++  ++ 
Sbjct: 8   PGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR---------FGKELIQSRKYKMSS 58

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS-TDVVVRE 139
           +      L +   ++ D G Y C   N V        L +   P+               
Sbjct: 59  DGRTH-TLTVMTEEQEDEGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAV 117

Query: 140 GTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
           G+ + L    +G P P + W            +L+                         
Sbjct: 118 GSTLRLHVMYIGRPVPAMTWFH--------GQKLLQN----------------------- 146

Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL--SHQFGSYRCVAVN 257
                      +E   +  T                  L ++++   +H  G Y+    N
Sbjct: 147 -----------SENITIENTEHYT-------------HLVMKNVQRKTHA-GKYKVQLSN 181

Query: 258 ALGETDGFIKVYV 270
             G  D  + V +
Sbjct: 182 VFGTVDAILDVEI 194

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 27/150 (18%), Positives = 40/150 (26%), Gaps = 59/150 (39%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P I   +   DV  + G    L C  VG P P + W R         G+ +        
Sbjct: 7   APGIR--KEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYR--------FGKELIQ------ 50

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
                                       + K  M   G  +             TL + +
Sbjct: 51  ----------------------------SRKYKMSSDGRTH-------------TLTVMT 69

Query: 243 ILSHQFGSYRCVAVNALGE--TDGFIKVYV 270
                 G Y C+A N +GE  T   + +  
Sbjct: 70  EEQEDEGVYTCIATNEVGEVETSSKLLLQA 99

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens} Length = 197

 Score = 41.2 bits (97), Expect = 1e-04
 Identities = 15/107 (14%), Positives = 32/107 (29%), Gaps = 12/107 (11%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
             P               VG    +  +        + W             K++  ++ 
Sbjct: 99  ATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH---------GQKLLQNSEN 149

Query: 77  VSITFNDHRSWFLHLRDVQ-ETDRGWYMCQI-NTVPMTSQKGYLQVV 121
           ++I  N      L +++VQ +T  G Y  Q+ N          +++ 
Sbjct: 150 ITIE-NTEHYTHLVMKNVQRKTHAGKYKVQLSNVFGTVDAILDVEIQ 195

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 92.8 bits (230), Expect = 5e-22
 Identities = 43/291 (14%), Positives = 82/291 (28%), Gaps = 59/291 (20%)

Query: 27  PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRS 86
           P   +   V    ++ C         V W +M  +             + ++   +   S
Sbjct: 6   PGPELVLNVSSTFVLTCSGSA----PVVWERMSQEPP-----------QEMAKAQDGTFS 50

Query: 87  WFLHLRDVQETDRGWYMCQINTVPM--TSQKGYLQVVVP----PRILLDRTSTDVVVREG 140
             L L ++   D G Y C  N      T ++  L + VP      +  D     + + E 
Sbjct: 51  SVLTLTNLTGLDTGEYFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEI 110

Query: 141 TEVTLECSAVGYPEPYVAWRREDG-------------------------KAINYNGELV- 174
           TE+T+ C     P+  V    + G                         K    + E+  
Sbjct: 111 TEITIPCRVTD-PQLVVTLHEKKGDVALPVPYDHQRGFSGIFEDRSYICKTTIGDREVDS 169

Query: 175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY 223
                         +++          + + L C           WT  + +     +  
Sbjct: 170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGRLVEPV 229

Query: 224 EDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274
            D  L   Y     L I S      G+Y C    ++ +      + + +V+
Sbjct: 230 TDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVE 280

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens} Length = 289

 Score = 43.2 bits (101), Expect = 5e-05
 Identities = 14/102 (13%), Positives = 29/102 (28%), Gaps = 6/102 (5%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
              +          G+   + C+V         W     ++      ++V       +  
Sbjct: 182 INVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKES-----GRLVEPVTDFLLDM 236

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
             H    LH+   +  D G Y C    +V     +  + + V
Sbjct: 237 PYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITV 278

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 90.2 bits (224), Expect = 7e-22
 Identities = 41/253 (16%), Positives = 71/253 (28%), Gaps = 66/253 (26%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F E + N+       A + C V    +  V W +           +++    +  I  
Sbjct: 5   PHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQ--------GKEIIADGLKYRIQE 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS---TDVVV 137
                  L +  V + D   Y  +  N     S    L+V VP +I L +T      V  
Sbjct: 57  FKGGYHQLIIASVTDDDATVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHA 116

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
             G  V+++    G P+P + W++                                    
Sbjct: 117 LRGEVVSIKIPFSGKPDPVITWQKG----------------------------------- 141

Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
                            D+I     Y   ++I   S    +    +     G Y   A N
Sbjct: 142 ----------------QDLIDNNGHY---QVIVTRSFTSLVFPNGVERKDAGFYVVCAKN 182

Query: 258 ALGETDGFIKVYV 270
             G     +++ V
Sbjct: 183 RFGIDQKTVELDV 195

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 52.4 bits (126), Expect = 2e-08
 Identities = 26/149 (17%), Positives = 37/149 (24%), Gaps = 55/149 (36%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
           + P         ++ VR  +  TL C   G+P+P V W R  GK I              
Sbjct: 3   MAPHFK--EELRNLNVRYQSNATLVCKVTGHPKPIVKWYR-QGKEI-------------- 45

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                   L Y       +                  +  L I 
Sbjct: 46  --------------------IADGLKYR------IQEFKGG------------YHQLIIA 67

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
           S+       Y+  A N  G   G   + V
Sbjct: 68  SVTDDDATVYQVRATNQGGSVSGTASLEV 96

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A Length = 197

 Score = 52.0 bits (125), Expect = 3e-08
 Identities = 16/105 (15%), Positives = 33/105 (31%), Gaps = 10/105 (9%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
            K  +P+  E +  V A  G+   +        +  + W K            ++  N  
Sbjct: 100 AKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK---------GQDLIDNNGH 150

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
             +      +  +    V+  D G+Y+    N   +  +   L V
Sbjct: 151 YQVIVTRSFTSLVFPNGVERKDAGFYVVCAKNRFGIDQKTVELDV 195

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 92.9 bits (230), Expect = 4e-21
 Identities = 42/331 (12%), Positives = 85/331 (25%), Gaps = 37/331 (11%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
                     P   +  +VG++ ++ C         + +      +       V    K 
Sbjct: 220 GYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKT 279

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI-LLDRTSTD 134
            S +        L +  V  +D+G Y C   + +       +++V   P +       + 
Sbjct: 280 QSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESL 339

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP-MLTIP------------ 181
           V    G  V +    +GYP P + W + +G  +  N  +    +LTI             
Sbjct: 340 VEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTIMEVSERDTGNYTV 398

Query: 182 ---NQLEGAFVSQTVELHCHT----EAFPASLNYWTNEKGDMI-----ITGDD------- 222
              N +     S  V L  +               + + G        +           
Sbjct: 399 ILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHW 458

Query: 223 -YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR 281
            ++                      ++ S          E +      +   +  +  + 
Sbjct: 459 YWQLEEECANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLV 518

Query: 282 KMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
             +      Y C A N  V      I   V 
Sbjct: 519 IQAANVSALYKCEAVN-KVGRGERVISFHVT 548

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 84.8 bits (209), Expect = 2e-18
 Identities = 51/402 (12%), Positives = 89/402 (22%), Gaps = 118/402 (29%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
             D+PR +     +T        + C  +      + W+    Q+          Q   V
Sbjct: 28  SLDLPRLSIQKDILTIKANTTLQITCRGQ----RDLDWLWPNNQSGS-------EQRVEV 76

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL---DRTST 133
           +   +      L +  V   D G Y C    T   +    Y+Q    P I          
Sbjct: 77  TECSDGLFCKTLTIPKVIGNDTGAYKCFYRETDLASVIYVYVQDYRSPFIASVSDQHGVV 136

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDG----------------------------- 164
            +   +   V + C             R                                
Sbjct: 137 YITENKNKTVVIPCLGSISNLNVSLCARYPEKRFVPDGNRISWDSKKGFTIPSYMISYAG 196

Query: 165 ----KAINYNGEL-------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLN 207
               +A   +                +  ++  P+      V + + L+C          
Sbjct: 197 MVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGI 256

Query: 208 YWTNEKGDMIITGDDYEDSRLINGYSCHM-----TLKIRSILSHQFGSYRCVAVNALGET 262
            +  E            +  L       M     TL I  +     G Y C A + L   
Sbjct: 257 DFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTK 316

Query: 263 DGFIKVYV---------------------------------------------------N 271
                V V                                                    
Sbjct: 317 KNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYKNGIPLESNHT 376

Query: 272 LVDGDIFQIRKMSRLHMGAYLCIASNGV-VPSVSHRIMVTVH 312
           +  G +  I ++S    G Y  I +N +     SH + + V+
Sbjct: 377 IKAGHVLTIMEVSERDTGNYTVILTNPISKEKQSHVVSLVVY 418

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 82.5 bits (203), Expect = 1e-17
 Identities = 28/283 (9%), Positives = 64/283 (22%), Gaps = 63/283 (22%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVE------------------------NLREYK 52
             P +   +      +   G    + C V                          +    
Sbjct: 419 VPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEECANEPSQAVSVTN 478

Query: 53  VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPM 111
               +             +  NK               L          Y C+ +N V  
Sbjct: 479 PYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAANVSALYKCEAVNKVGR 538

Query: 112 TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
             +     V   P I L     D+   E   V+L C+A       + W +   + +  + 
Sbjct: 539 GERVISFHVTRGPEITLQP---DMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHV 595

Query: 172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
             +P  +                                               +   N 
Sbjct: 596 GELPTPVCKNLDTL-----------------------------------WKLNATMFSNS 620

Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274
            +  + +++++      G Y C+A +   +    +   + +++
Sbjct: 621 TNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLE 663

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 81.7 bits (201), Expect = 2e-17
 Identities = 32/265 (12%), Positives = 68/265 (25%), Gaps = 74/265 (27%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT--------- 72
                   ++  T  +   + C  +      + W K+  Q +     ++ T         
Sbjct: 550 GPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYKLGPQPLPIHVGELPTPVCKNLDTL 609

Query: 73  -QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV----PPRI 126
            +      + + +    + L++    D+G Y+C   +           Q+ V     P I
Sbjct: 610 WKLNATMFSNSTNDILIMELKNASLQDQGDYVCLAQDRKTKKRHCVVRQLTVLERVAPTI 669

Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEG 186
                  +     G  + + C+A G P P + W +        + E +            
Sbjct: 670 T--GNLENQTTSIGESIEVSCTASGNPPPQIMWFK--------DNETLVE---------- 709

Query: 187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH 246
                                                +   ++   +    L IR +   
Sbjct: 710 -------------------------------------DSGIVLKDGNR--NLTIRRVRKE 730

Query: 247 QFGSYRCVAVNALGETDGFIKVYVN 271
             G Y C A + LG         + 
Sbjct: 731 DEGLYTCQACSVLGCAKVEAFFIIE 755

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R Length = 772

 Score = 54.4 bits (130), Expect = 2e-08
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P     + N T ++G+   ++C        ++ W K          ++ + ++  + +  
Sbjct: 667 PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKD---------NETLVEDSGIVLKD 717

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
            +     L +R V++ D G Y CQ  + +     + +  +      
Sbjct: 718 GNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 760

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 91.5 bits (227), Expect = 5e-21
 Identities = 43/311 (13%), Positives = 83/311 (26%), Gaps = 75/311 (24%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
           +          T   G+   + CV+ N   +  + W K    +    +  V   ++R++ 
Sbjct: 100 LIASPAKTHEKTPIEGRPFQLDCVLPNAYPKPLITWKK--RLSGADPNADVTDFDRRITA 157

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMT-SQKGYLQVVV----------PPRIL 127
             +    +F  +     +D   Y+C   N            ++             P   
Sbjct: 158 GPD-GNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQ 216

Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG----------------------- 164
               S D++ + G    + C     P  Y  + +                          
Sbjct: 217 --YVSKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLF 274

Query: 165 -------------KAINYNGE----------LVPPMLTI-PNQLEGAFVSQTVELHCHTE 200
                        +  N  G+          +  P     P ++      Q V + C   
Sbjct: 275 KTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVT 334

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
             PA    W+       ++G       + +       L I+ + +   G Y C A N  G
Sbjct: 335 GLPAPNVVWS--HNAKPLSGGRA---TVTDS-----GLVIKGVKNGDKGYYGCRATNEHG 384

Query: 261 ETDGFIKVYVN 271
           +      V VN
Sbjct: 385 DKYFETLVQVN 395

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 76.9 bits (189), Expect = 5e-16
 Identities = 49/318 (15%), Positives = 87/318 (27%), Gaps = 45/318 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P   +  A V        ++ C++E N +  K +W K           K     +  +  
Sbjct: 7   PVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKD---------GKSYNWQEHNAAL 57

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
             D  S  L     Q +D G Y C         +S+    +            + +    
Sbjct: 58  RKDEGS--LVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIAS--PAKTHEKTPI 113

Query: 139 EGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
           EG    L+C     YP+P + W++      + N ++      I    +G      V    
Sbjct: 114 EGRPFQLDCVLPNAYPKPLITWKK-RLSGADPNADVTDFDRRITAGPDGNLYFTIVTKED 172

Query: 198 HTEAFPASLNYW---TNEKGDMIITGDDYEDSRLINGYSCHMTLKI-------RSILSHQ 247
            ++ +     Y     N   D  +   +YE   +    S +    +           +  
Sbjct: 173 VSDIY----KYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAGD 228

Query: 248 FGSYRCVAV-------------NALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI 294
                C+                 +           N   G     +       G Y C 
Sbjct: 229 VTMIYCMYGSNPMGYPNYFKNGKDVNGNPEDRITRHNRTSGKRLLFKTTLPEDEGVYTCE 288

Query: 295 ASNGVVPSVSHRIMVTVH 312
             NGV     H + +TV 
Sbjct: 289 VDNGVGKPQKHSLKLTVV 306

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 Length = 395

 Score = 62.6 bits (152), Expect = 3e-11
 Identities = 32/198 (16%), Positives = 49/198 (24%), Gaps = 61/198 (30%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGK----------- 165
           L V   P +       +V+ RE     LEC   G  +    +W++ DGK           
Sbjct: 1   LPVDKYPVLK--DQPAEVLFRENNPTVLECIIEGNDQGVKYSWKK-DGKSYNWQEHNAAL 57

Query: 166 -----------------------AINYNGEL--------VPPMLTIPNQLEGAFVS--QT 192
                                  A    G             ++  P +         + 
Sbjct: 58  RKDEGSLVFLRPQASDEGHYQCFAETPAGVASSRVISFRKTYLIASPAKTHEKTPIEGRP 117

Query: 193 VELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSR----LINGYSCHMTLKIRSIL--- 244
            +L C    A+P  L  W           D  +  R      +G      L    +    
Sbjct: 118 FQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKED 172

Query: 245 SHQFGSYRCVAVNALGET 262
                 Y C A NA  + 
Sbjct: 173 VSDIYKYVCTAKNAAVDE 190

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 88.0 bits (218), Expect = 5e-21
 Identities = 44/262 (16%), Positives = 75/262 (28%), Gaps = 84/262 (32%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
           P   E    V    GK  ++ C        +    W+      +       +T +KR  +
Sbjct: 9   PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLL-NEFPVF------ITMDKRRFV 61

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV----------PPRILL 128
           +  +     L++ +V+ +D+G Y C + +     S       ++          P  I+ 
Sbjct: 62  SQTNGN---LYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIV- 117

Query: 129 DRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAF 188
                DV    G  VTLEC A+G P P + WR+   + +                     
Sbjct: 118 -VQFKDVYALMGQNVTLECFALGNPVPDIRWRK-VLEPMPSTA----------------- 158

Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
                                +     + I     ED                       
Sbjct: 159 -------------------EISTSGAVLKIFNIQLEDE---------------------- 177

Query: 249 GSYRCVAVNALGETDGFIKVYV 270
           G Y C A N  G+     ++YV
Sbjct: 178 GIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 40.3 bits (94), Expect = 3e-04
 Identities = 17/104 (16%), Positives = 33/104 (31%), Gaps = 15/104 (14%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           KP          +V A +G+   + C         + W K+          + +      
Sbjct: 110 KPYPADIVVQFKDVYALMGQNVTLECFALGNPVPDIRWRKV---------LEPMPSTAE- 159

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
            I+ +      L + ++Q  D G Y C+  N       +  + V
Sbjct: 160 -ISTSGAV---LKIFNIQLEDEGIYECEAENIRGKDKHQARIYV 199

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens} Length = 201

 Score = 38.7 bits (90), Expect = 8e-04
 Identities = 23/158 (14%), Positives = 37/158 (23%), Gaps = 55/158 (34%)

Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
           G     + P         +V V+EG  + L C    +                      P
Sbjct: 1   GPGSGYLDPFP--PEERPEVRVKEGKGMVLLCDPPYHF---------------------P 37

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
             L+                             W   +  + IT D        NG    
Sbjct: 38  DDLSY---------------------------RWLLNEFPVFITMDKRRFVSQTNG---- 66

Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV 273
             L I ++ +   G+Y C   +       F K    + 
Sbjct: 67  -NLYIANVEASDKGNYSCFVSSPSITKSVFSKFIPLIP 103

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4 Length = 212

 Score = 87.7 bits (217), Expect = 7e-21
 Identities = 38/261 (14%), Positives = 68/261 (26%), Gaps = 57/261 (21%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-ITQTILSIHHKVVTQNKRVSIT 80
                  ++V     +   + C        +V W  +  + T L  ++  +T      +T
Sbjct: 2   GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT 61

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKG--YLQVVVPPRILLDRTSTDVVV 137
           F+      +    V   D G Y C +         +   +L V+VPP       S    V
Sbjct: 62  FSSSG---ITFSSVTRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKP--TISVPSSV 116

Query: 138 REGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELH 196
             G    L CS   G P    +W +        +G  +                      
Sbjct: 117 TIGNRAVLTCSEHDGSPPSEYSWFK--------DGISMLT-------------------- 148

Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
                   +            I                   L    + +   G Y C A 
Sbjct: 149 ------ADAKKTRAFMNSSFTIDPKS-------------GDLIFDPVTAFDSGEYYCQAQ 189

Query: 257 NALGETDGFIKVYVNLVDGDI 277
           N  G        +++ V+ ++
Sbjct: 190 NGYGTAMRSEAAHMDAVELNV 210

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 89.2 bits (221), Expect = 8e-21
 Identities = 46/297 (15%), Positives = 73/297 (24%), Gaps = 70/297 (23%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P        +    G+   + CV        V W   I+           +         
Sbjct: 5   PVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGST-------- 52

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
                  L  R+    + G Y C         S   +L V  P        + +V V EG
Sbjct: 53  -------LTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWN-LLAQEVTVVEG 104

Query: 141 TEVTLECSAVGY-PEPYVAWRREDGK--------------------------------AI 167
            E  L C       +  V+  RE G+                                 +
Sbjct: 105 QEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTM 164

Query: 168 NYNGE--------------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK 213
               E                PP + +          +  ++ C         N     +
Sbjct: 165 VNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK-R 223

Query: 214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           GD  +      D +  N Y     L + ++     G Y CVA N +G     +   V
Sbjct: 224 GDTKLEIPLNSDFQ-DNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQV 279

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 50.3 bits (120), Expect = 3e-07
 Identities = 19/106 (17%), Positives = 29/106 (27%), Gaps = 8/106 (7%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+     + +    G+ A + C   N        +K     +       +  N      +
Sbjct: 187 PQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILKRGDTKL------EIPLNSDFQDNY 240

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
                  L L  V   D G Y C   N V   +     QVV     
Sbjct: 241 YKKVR-ALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESHHH 285

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 49.2 bits (117), Expect = 5e-07
 Identities = 36/199 (18%), Positives = 49/199 (24%), Gaps = 54/199 (27%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P I       ++VV  G  VTL C + G     V W          + E     LT  N
Sbjct: 4   APVIEPS--GPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRN 57

Query: 183 -----------------------------QLEGAFVS----------QTVELHCHTEAFP 203
                                            ++            Q   L C      
Sbjct: 58  ATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPA 117

Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA-VNALGE 261
              +     E G  ++    Y        +S      IR        +Y C   VN    
Sbjct: 118 LKDSVSLMREGGRQVLRKTVYF-------FSPWRGFIIRKAKVLDSNTYVCKTMVNGRES 170

Query: 262 TDGFIKVYVNLVDGDIFQI 280
           T   I + VN V  +  QI
Sbjct: 171 TSTGIWLKVNRVHPEPPQI 189

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} Length = 289

 Score = 42.2 bits (99), Expect = 1e-04
 Identities = 31/191 (16%), Positives = 45/191 (23%), Gaps = 67/191 (35%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
            P++            +TV L C +         W            +   S        
Sbjct: 4   APVIEPSGPELVVEPGETVTLRCVSNGSVE----WDGPISPYWTLDPESPGS-------- 51

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGE--------------------------------- 261
             TL  R+      G+YRC  +                                      
Sbjct: 52  --TLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVL 109

Query: 262 ----TDGFIKVYVNLV--DGDI--------------FQIRKMSRLHMGAYLCIASNGVVP 301
               TD  +K  V+L+   G                F IRK   L    Y+C        
Sbjct: 110 PCLITDPALKDSVSLMREGGRQVLRKTVYFFSPWRGFIIRKAKVLDSNTYVCKTMVNGRE 169

Query: 302 SVSHRIMVTVH 312
           S S  I + V+
Sbjct: 170 STSTGIWLKVN 180

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A Length = 194

 Score = 87.1 bits (216), Expect = 1e-20
 Identities = 45/256 (17%), Positives = 81/256 (31%), Gaps = 75/256 (29%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
           P F +P+ +V    G  A     +      +V+W +   +I+ +              V 
Sbjct: 6   PTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQVISTS----------TLPGVQ 55

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV---VPPRILLDRTSTD 134
           I+F+D R+  L +  V + + G Y  +  N     +    L V     PP  +  +    
Sbjct: 56  ISFSDGRA-KLTIPAVTKANSGRYSLKATNGSGQATSTAELLVKAETAPPNFV--QRLQS 112

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
           + VR+G++V L+    G P P V + R        +G  +                    
Sbjct: 113 MTVRQGSQVRLQVRVTGIPTPVVKFYR--------DGAEIQS------------------ 146

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                           +    +   GD Y             +L I        G+Y   
Sbjct: 147 ----------------SLDFQISQEGDLY-------------SLLIAEAYPEDSGTYSVN 177

Query: 255 AVNALGETDGFIKVYV 270
           A N++G      ++ V
Sbjct: 178 ATNSVGRATSTAELLV 193

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 90.5 bits (224), Expect = 1e-20
 Identities = 46/390 (11%), Positives = 86/390 (22%), Gaps = 112/390 (28%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           +P         A V   V     +  +V+        WV           H  +      
Sbjct: 45  RPQSSGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVF---------KHSSLNCQPHF 95

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
            +      S  + +  + ET  G Y+  I +     +    + +       L R      
Sbjct: 96  DLQNRGVVS--MVILKMTETQAGEYLLFIQSEATNYTILFTVSIRNTLLYTLRRP--YFR 151

Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGK------------------------------A 166
             E  +  L C +   PEP V W   D +                              A
Sbjct: 152 KMEN-QDALVCISESVPEPIVEWVLCDSQGESCKEESPAVVKKEEKVLHELFGTDIRCCA 210

Query: 167 INYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDM 216
            N  G          L     T   QL    V + + + C            W     + 
Sbjct: 211 RNELGRECTRLFTIDLNQTPQTTLPQLF-LKVGEPLWIRCKAVHVNHGFGLTWE--LENK 267

Query: 217 IITGDDYEDSRLINGYSCHM---TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV--- 270
            +   +Y +    +     +      + S+  +  G Y C +     ++   + +     
Sbjct: 268 ALEEGNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQS-ALVTIVEKGF 326

Query: 271 ----------------------------------------------NLVDGDIFQIRKMS 284
                                                          L +G         
Sbjct: 327 INATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSRKSFPCEQKGLDNGYSISKFCNH 386

Query: 285 RLHMGAYLCIASNGVVPSVSHRIMVTVHCK 314
           +   G Y+  A N      +    + +   
Sbjct: 387 KHQPGEYIFHAENDDA-QFTKMFTLNIRSG 415

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 59.7 bits (144), Expect = 3e-10
 Identities = 21/211 (9%), Positives = 40/211 (18%), Gaps = 57/211 (27%)

Query: 93  DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
           D        Y               L+      +     +  V V     +TL+      
Sbjct: 21  DSSVGKSSSYPMVSE--SPEDLGCALRPQSSGTV---YEAAAVEVDVSASITLQVLVDAP 75

Query: 153 PEPYVAWRREDGK---------------------------------AINYNGE------- 172
                 W  +                                      +           
Sbjct: 76  GNISCLWVFKHSSLNCQPHFDLQNRGVVSMVILKMTETQAGEYLLFIQSEATNYTILFTV 135

Query: 173 --LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
                 + T+         +Q   L C +E+ P  +  W         +  +   + +  
Sbjct: 136 SIRNTLLYTLRRPYFRKMENQDA-LVCISESVPEPIVEWVLCDSQ-GESCKEESPAVVKK 193

Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
                    +  +        RC A N LG 
Sbjct: 194 E-----EKVLHELFG---TDIRCCARNELGR 216

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens} Length = 423

 Score = 39.7 bits (92), Expect = 8e-04
 Identities = 8/109 (7%), Positives = 25/109 (22%), Gaps = 15/109 (13%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
                      +      +E   +   +   + +  W             K     ++  
Sbjct: 324 KGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFS---------RKSFPCEQK-- 372

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
              ++  S  +      +   G Y+    N     ++   L +    + 
Sbjct: 373 -GLDNGYS--ISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH 418

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 89.2 bits (221), Expect = 3e-20
 Identities = 39/308 (12%), Positives = 74/308 (24%), Gaps = 81/308 (26%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRV 77
              +   V       G  A++ C++ +        V+W     +            + + 
Sbjct: 103 AQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPG----AEYDGKY 158

Query: 78  SITFNDHRSWFLHLRDVQETD-RGWYMCQ-INTV---PMTSQKGYLQVVVPP-----RIL 127
            +  +      LH+R+V   D    Y C+  + +      S      V+  P        
Sbjct: 159 LVLPSGE----LHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRT 214

Query: 128 LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGK---------------------- 165
                  + +     ++L C A G+P P   W +                          
Sbjct: 215 PALVQKPLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSGTLII 274

Query: 166 --------------AINYNGE---------LVPPMLTIPNQLEGAFVSQTVELHCHTEAF 202
                           N  G            P    I    +     +     C     
Sbjct: 275 KDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGN 334

Query: 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
           P     W  + G  I   +                L+I S+     G Y+C   N     
Sbjct: 335 PIKTVSWMKD-GKAIGHSES--------------VLRIESVKKEDKGMYQCFVRNDRESA 379

Query: 263 DGFIKVYV 270
           +   ++ +
Sbjct: 380 EASAELKL 387

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 76.5 bits (188), Expect = 6e-16
 Identities = 38/166 (22%), Positives = 57/166 (34%), Gaps = 18/166 (10%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
            P  P   +    +   V     + C  +        W K I  T       +  + K+V
Sbjct: 211 APRTPALVQK--PLELMVAHTISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQV 268

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVV 136
           S T        L ++D    D G Y+C + N+V   S +  L V  P             
Sbjct: 269 SGT--------LIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAK--IDPPTQT 318

Query: 137 VREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           V  G      C   G P   V+W + DGKAI ++      +L I +
Sbjct: 319 VDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSES----VLRIES 359

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 70.7 bits (173), Expect = 6e-14
 Identities = 48/311 (15%), Positives = 82/311 (26%), Gaps = 72/311 (23%)

Query: 22  PRFA-EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P F  EP   +  +    A + C        ++ W++    T +     +   +    + 
Sbjct: 4   PVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRS-DGTAVGDVPGLRQISSDGKLV 62

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
           F      F      QE     Y C   N    + S+  +++ VV      D       V 
Sbjct: 63  FPP----FRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVI 116

Query: 139 EGTEVTLEC---SAVGYPEPYVAWRREDGK------------AINYNGEL---------- 173
            G    ++C   S V      V+W  ++ +             +  +GEL          
Sbjct: 117 RGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSGELHIREVGPEDG 176

Query: 174 ----------------------------VPPMLTIPNQLEGAFVSQTV------ELHCHT 199
                                        P   + P           +       L C  
Sbjct: 177 YKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAHTISLLCPA 236

Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
           + FPA    W               + R+        TL I+  +    G Y CV  N++
Sbjct: 237 QGFPAPSFRWYKFIEGTTRKQAVVLNDRVKQVSG---TLIIKDAVVEDSGKYLCVVNNSV 293

Query: 260 GETDGFIKVYV 270
           G       + V
Sbjct: 294 GGESVETVLTV 304

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A* Length = 388

 Score = 67.3 bits (164), Expect = 9e-13
 Identities = 34/196 (17%), Positives = 56/196 (28%), Gaps = 61/196 (31%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY---------NGE 172
             P  L + T+  +     T   +EC A G P P + W R DG A+           +G+
Sbjct: 2   KGPVFLKEPTNR-IDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGDVPGLRQISSDGK 60

Query: 173 LV----------------------------------------PPMLTIPNQLEGAFVSQT 192
           LV                                                  E      +
Sbjct: 61  LVFPPFRAEDYRQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNS 120

Query: 193 VELHCHTEAFPASLN---YWTNEKGDMIITGDDYEDSRLI--NGYSCHMTLKIRSI-LSH 246
             + C   +F A       W  ++ +    G +Y+   L+  +G      L IR +    
Sbjct: 121 AVIKCLIPSFVADFVEVVSWHTDEEENYFPGAEYDGKYLVLPSG-----ELHIREVGPED 175

Query: 247 QFGSYRCVAVNALGET 262
            + SY+C   + L   
Sbjct: 176 GYKSYQCRTKHRLTGE 191

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 85.8 bits (212), Expect = 4e-20
 Identities = 40/258 (15%), Positives = 64/258 (24%), Gaps = 58/258 (22%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKM-ITQTILSIHHKVVTQNKRVSIT 80
                    V         ++C        +V W       T L  ++  +T +    +T
Sbjct: 5   VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVT 64

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVP--MTSQKGYLQVVVPPRILLDRTSTDVVV 137
           F       +  + V   D G Y C +           K  L V+VPP       +     
Sbjct: 65  FLPTG---ITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKP--TVNIPSSA 119

Query: 138 REGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELH 196
             G    L CS   G P     W +        +G ++P                     
Sbjct: 120 TIGNRAVLTCSEQDGSPPSEYTWFK--------DGIVMPTNPKSTRAFS----------- 160

Query: 197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
                                        S ++N  +    L    + +   G Y C A 
Sbjct: 161 ---------------------------NSSYVLNPTT--GELVFDPLSASDTGEYSCEAR 191

Query: 257 NALGETDGFIKVYVNLVD 274
           N  G       V +  V+
Sbjct: 192 NGYGTPMTSNAVRMEAVE 209

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G Length = 209

 Score = 39.6 bits (92), Expect = 5e-04
 Identities = 7/41 (17%), Positives = 14/41 (34%), Gaps = 1/41 (2%)

Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSV-SHRIMVTVH 312
                   + ++R   G Y C+ S     S    ++ + V 
Sbjct: 65  FLPTGITFKSVTREDTGTYTCMVSEEGGNSYGEVKVKLIVL 105

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 85.9 bits (212), Expect = 4e-20
 Identities = 30/180 (16%), Positives = 59/180 (32%), Gaps = 25/180 (13%)

Query: 26  EPVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
            P   +    G+ A + C      E+     + W+   +   +     ++          
Sbjct: 5   TPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNY 64

Query: 76  ------RVSITFND--HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
                 RV  T ND       +++ ++Q +D G Y C++     + ++K  L V+V P  
Sbjct: 65  YPDLKGRVHFTSNDVKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSG 124

Query: 127 LLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPM---LTIPN 182
              R   D     G +  L+C    G       W++           L       +++ N
Sbjct: 125 T--RCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKN 182

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X Length = 214

 Score = 43.5 bits (102), Expect = 2e-05
 Identities = 30/250 (12%), Positives = 61/250 (24%), Gaps = 96/250 (38%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY----VAWRREDGKAINYNGEL 173
           L +  P           +   +G    L C     PE      + W              
Sbjct: 1   LSITTPE--------QRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDN------- 45

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
                          V Q + L+   + +    NY+ + KG +  T +D +         
Sbjct: 46  -------------QIVDQVIILYSGDKIYD---NYYPDLKGRVHFTSNDVKSG------- 82

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV------------------------- 268
              ++ + ++     G+Y+C    A G  +    +                         
Sbjct: 83  -DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKL 141

Query: 269 ---------------------------YVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVP 301
                                      ++  +   +  ++  S  + G Y C   N V  
Sbjct: 142 KCEPKEGSLPLQFEWQKLSDSQTMPTPWLAEMTSPVISVKNASSEYSGTYSCTVQNRVG- 200

Query: 302 SVSHRIMVTV 311
           S    + + V
Sbjct: 201 SDQCMLRLDV 210

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B Length = 202

 Score = 84.3 bits (208), Expect = 1e-19
 Identities = 33/142 (23%), Positives = 50/142 (35%), Gaps = 7/142 (4%)

Query: 27  PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND--H 84
           P    T  VG    + C  +     ++  ++   Q +    +    Q++R ++       
Sbjct: 8   PKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKV---ENDTSLQSERATLLEEQLPL 64

Query: 85  RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
                H+  VQ  D G Y C +        K YL V V    +   T    V     EV 
Sbjct: 65  GKALFHIPSVQVRDSGQYRCLVICGAAWDYK-YLTVKVKASYMRIDTRILEVP-GTGEVQ 122

Query: 145 LECSAVGYPEPYVAWRREDGKA 166
           L C A GYP   V+W+     A
Sbjct: 123 LTCQARGYPLAEVSWQNVSVPA 144

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 84.0 bits (208), Expect = 1e-19
 Identities = 42/157 (26%), Positives = 68/157 (43%), Gaps = 16/157 (10%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
           + P  P    P+  V A V + A   C VE+  + +++W +            +   + R
Sbjct: 3   KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRN--------KILIKLFDTR 54

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRILLDRTSTD 134
            SI  N      L +  V+++D G Y C   N V       G LQV + P+I   R   +
Sbjct: 55  YSIRENGQ---LLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKIT--RPPIN 109

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
           V + EG +  L C+ +G P+P V+W +    A+  N 
Sbjct: 110 VKIIEGLKAVLPCTTMGNPKPSVSWIK-GDSALRENS 145

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 56.7 bits (137), Expect = 8e-10
 Identities = 35/238 (14%), Positives = 57/238 (23%), Gaps = 95/238 (39%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI----------- 167
           ++   P I        V        T  C+   YP+P ++W R +   I           
Sbjct: 3   KLPKAPVIT--TPLETVDALVEEVATFMCAVESYPQPEISWTR-NKILIKLFDTRYSIRE 59

Query: 168 -----------------------NYNGE----------LVPPMLTIPNQLEGAFVSQTVE 194
                                  N  G            + P +T P             
Sbjct: 60  NGQLLTILSVEDSDDGIYCCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAV 119

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
           L C T   P     W   KGD  +  +                    ++L          
Sbjct: 120 LPCTTMGNPKPSVSWI--KGDSALRENSR-----------------IAVLE--------- 151

Query: 255 AVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                    G      +L      +I  + +   G Y C+A N +  + S  + + V 
Sbjct: 152 --------SG------SL------RIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVE 189

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus} Length = 192

 Score = 44.7 bits (106), Expect = 7e-06
 Identities = 24/104 (23%), Positives = 44/104 (42%), Gaps = 15/104 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+   P  NV    G +A++ C      +  V+W+K             + +N R+++  
Sbjct: 101 PKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIK---------GDSALRENSRIAVLE 151

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVP 123
           +      L + +VQ+ D G Y C   N++    S+   L+V V 
Sbjct: 152 SGS----LRIHNVQKEDAGQYRCVAKNSLGTAYSKLVKLEVEVF 191

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 83.1 bits (205), Expect = 7e-19
 Identities = 42/257 (16%), Positives = 75/257 (29%), Gaps = 60/257 (23%)

Query: 22  PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           P +  P       +           C         ++W+K         + +      R+
Sbjct: 12  PYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK---------NGREFRGEHRI 62

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV---PPRILLDRTST 133
                 H+ W L +  V  +DRG Y C + N      Q   L V+       IL      
Sbjct: 63  GGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPA 122

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
           +     G++V   C      +P++ W +        NG  V P  T    +  +++S++V
Sbjct: 123 NQTAVLGSDVEFHCKVYSDAQPHIQWLKHV----EVNGSKVGPDGTPYVTVLKSWISESV 178

Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
           E                                           L++ ++     G Y C
Sbjct: 179 EADV---------------------------------------RLRLANVSERDGGEYLC 199

Query: 254 VAVNALGETDGFIKVYV 270
            A N +G  +    + V
Sbjct: 200 RATNFIGVAEKAFWLSV 216

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 63.8 bits (155), Expect = 5e-12
 Identities = 24/129 (18%), Positives = 47/129 (36%), Gaps = 9/129 (6%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK--MITQTILSIHHKVVTQNKRVSI 79
              A   AN TA +G +    C V +  +  + W+K   +  + +           +  I
Sbjct: 115 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKSWI 174

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
           + +      L L +V E D G Y+C+  N + +  +  +L V  P          + +V 
Sbjct: 175 SESVEADVRLRLANVSERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA------EEELVE 228

Query: 139 EGTEVTLEC 147
                ++  
Sbjct: 229 ADEAGSVHH 237

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens} Length = 241

 Score = 47.2 bits (112), Expect = 2e-06
 Identities = 21/152 (13%), Positives = 35/152 (23%), Gaps = 56/152 (36%)

Query: 121 VVPPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
              P            + V     V   C A G P P ++W +        NG       
Sbjct: 9   TGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK--------NGREFRG-- 58

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                                           +  G + +    +             +L
Sbjct: 59  -------------------------------EHRIGGIKLRHQQW-------------SL 74

Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            + S++    G+Y CV  N  G       + V
Sbjct: 75  VMESVVPSDRGNYTCVVENKFGSIRQTYTLDV 106

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A Length = 226

 Score = 82.8 bits (204), Expect = 7e-19
 Identities = 31/155 (20%), Positives = 57/155 (36%), Gaps = 17/155 (10%)

Query: 27  PVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           P   + A VG++A + C +    +    ++ WV    + +++++        R S  +  
Sbjct: 10  PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRG 69

Query: 84  HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
             S            L + +V  +D G Y+C               V +    L      
Sbjct: 70  RTSILRDGITAGKAALRIHNVTASDSGKYLCYFQD---GDFYEKALVELKVAALGSDLHV 126

Query: 134 DVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAI 167
           DV   +   + LEC + G YP+P + W    G+ I
Sbjct: 127 DVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGENI 161

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 82.7 bits (204), Expect = 1e-18
 Identities = 36/214 (16%), Positives = 56/214 (26%), Gaps = 54/214 (25%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
             +      D G Y CQ       S    L++     +L     +  V  EG  + L C 
Sbjct: 50  YRITSASVNDSGEYRCQRGLSG-RSDPIQLEIHRGWLLL---QVSSRVFTEGEPLALRCH 105

Query: 149 AV-GYPEPYVAWRREDGKAINY---NGEL------------------------------- 173
           A        V + R +GKA  +   N  L                               
Sbjct: 106 AWKDKLVYNVLYYR-NGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVT 164

Query: 174 -----VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL 228
                  P+L              V L C T+           ++  + +    Y  S+ 
Sbjct: 165 VKELFPAPVLNASVTSP-LLEGNLVTLSCETKLLL--------QRPGLQLYFSFYMGSKT 215

Query: 229 INGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
           + G +     +I +      G Y C A    G  
Sbjct: 216 LRGRNTSSEYQILTARREDSGLYWCEAATEDGNV 249

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 58.8 bits (142), Expect = 3e-10
 Identities = 15/78 (19%), Positives = 23/78 (29%), Gaps = 1/78 (1%)

Query: 83  DHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
            H +  L +     +  G Y C  +     TS    + V       +   S    + EG 
Sbjct: 127 FHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASVTSPLLEGN 186

Query: 142 EVTLECSAVGYPEPYVAW 159
            VTL C      +     
Sbjct: 187 LVTLSCETKLLLQRPGLQ 204

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens} Length = 262

 Score = 55.7 bits (134), Expect = 3e-09
 Identities = 39/266 (14%), Positives = 61/266 (22%), Gaps = 101/266 (37%)

Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNG--------------------- 171
            V V +   VTL C  +  P      W   +G A   +                      
Sbjct: 10  WVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTSTPSYRITSASVNDSGEYRCQRG 68

Query: 172 ----------ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITG 220
                     E+    L +          + + L CH        N  +           
Sbjct: 69  LSGRSDPIQLEIHRGWLLLQVSSRVFTEGEPLALRCHAWKDKLVYNVLY----------- 117

Query: 221 DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN--------- 271
             Y + +    +  +  L I        G+Y C  +     T   I V V          
Sbjct: 118 --YRNGKAFKFFHWNSNLTILKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLN 175

Query: 272 ------LVDGD-------------------------------------IFQIRKMSRLHM 288
                 L++G+                                      +QI    R   
Sbjct: 176 ASVTSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSKTLRGRNTSSEYQILTARREDS 235

Query: 289 GAYLCIASN--GVVPSVSHRIMVTVH 312
           G Y C A+   G V   S  + + V 
Sbjct: 236 GLYWCEAATEDGNVLKRSPELELQVL 261

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A* Length = 201

 Score = 80.4 bits (198), Expect = 3e-18
 Identities = 26/149 (17%), Positives = 55/149 (36%), Gaps = 13/149 (8%)

Query: 28  VANVTATVGKEALMACV----VENLREYKVAWVKMITQTILSIHHKVVTQNK---RVSIT 80
           V +VT  V + A ++C     VE L + ++ W K     +  +   +    +   R    
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVVV 137
             +  +  + +  ++ +D G Y C +      + K      V           + +D  +
Sbjct: 61  ITN--NLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEI 118

Query: 138 REGTEVTLECSAVG-YPEPYVAWRREDGK 165
                  + CS  G +PEP+++W     +
Sbjct: 119 PTSNIRRIICSTSGGFPEPHLSWLENGEE 147

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus} Length = 180

 Score = 79.5 bits (196), Expect = 4e-18
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 12/153 (7%)

Query: 26  EPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHK---VVTQNKRVSITF 81
           + V NV A  G    +  +   L  Y+ + W+    Q IL         V ++       
Sbjct: 4   QSVPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVD 63

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGT 141
            D  +  L + +V + DRG Y  ++        K  ++V           S  ++  E +
Sbjct: 64  LDKTNGALRIYNVSKEDRGDYYMRMLHETEDQWKITMEVYEMV-------SKPMIYWECS 116

Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINYNGELV 174
             TL C  +   +  +   +   + +    +  
Sbjct: 117 NATLTCEVLEGTDVELKLYQ-GKEHLRSLRQKT 148

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 80.3 bits (198), Expect = 4e-18
 Identities = 31/190 (16%), Positives = 56/190 (29%), Gaps = 38/190 (20%)

Query: 8   GCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIH 67
              +  +    P   +      +     G+   + C        +  W KM         
Sbjct: 5   HHHHHHSSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKM--------- 55

Query: 68  HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPR 125
                 NK +     +  +  L    V   D G+Y+C++ N      SQ   L V   P 
Sbjct: 56  ------NKEIP----NGNTSELIFNAVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPE 105

Query: 126 ILLDRTS-------------TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
                               T   +  G+ + L+C AVG P P+  W + +   + +   
Sbjct: 106 SFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK-NELPLTHET- 163

Query: 173 LVPPMLTIPN 182
               +  +P 
Sbjct: 164 --KKLYMVPY 171

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens} Length = 218

 Score = 62.2 bits (151), Expect = 1e-11
 Identities = 24/196 (12%), Positives = 41/196 (20%), Gaps = 64/196 (32%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG------------- 164
              +VP    +        V  G  V L C A G+P     W + +              
Sbjct: 11  SSGLVPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKEIPNGNTSELIFN 70

Query: 165 ------------KAINYNGE-------------------------LVPPMLTIPNQLEGA 187
                       +  N                                  + +    +  
Sbjct: 71  AVHVKDAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKL 130

Query: 188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ 247
               T+ L C     P     W   K ++ +T +                  +  +    
Sbjct: 131 MPGSTLVLQCVAVGSPIPHYQWF--KNELPLTHET------------KKLYMVPYVDLEH 176

Query: 248 FGSYRCVAVNALGETD 263
            G+Y C   N     D
Sbjct: 177 QGTYWCHVYNDRDSQD 192

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 81.1 bits (199), Expect = 6e-18
 Identities = 51/268 (19%), Positives = 82/268 (30%), Gaps = 55/268 (20%)

Query: 21  MPRFAEPVANVTATVGKEALMACVV---ENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           +P        +   VG+  LM CVV   E     +V W+    +   S +      N  V
Sbjct: 5   LPGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSV 64

Query: 78  S----------ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
                      +    H    L L+DVQ+ D G Y C+I         K  +++ V P  
Sbjct: 65  PTGRFQNRSHLVGDTFHNDGSLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEE 124

Query: 127 LLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRREDGKAINYNGELVPPMLTIPNQ 183
                  D+ VR G    + CS     E     V W    G                   
Sbjct: 125 -----PRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHT---------------- 163

Query: 184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI 243
                  +   L   +             +  + +TGD   +           ++K++++
Sbjct: 164 ------EEETVLSYDSNMRSGKFQSLGRFRNRVDLTGDISRNDG---------SIKLQTV 208

Query: 244 -LSHQFGSYRCVAVNALGETDGFIKVYV 270
             S Q G Y C       E+   I ++V
Sbjct: 209 KESDQ-GIYTCSIYVGKLESRKTIVLHV 235

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A* Length = 268

 Score = 45.6 bits (107), Expect = 8e-06
 Identities = 28/137 (20%), Positives = 49/137 (35%), Gaps = 20/137 (14%)

Query: 30  NVTATVGKEALMACVV---ENLREYKVAWVK-----MITQTILSIHHKVVTQNKRVSITF 81
           ++   VG    M C +   E  R  KV W+         +T+LS    + +   +    F
Sbjct: 127 DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSGSHTEEETVLSYDSNMRSGKFQSLGRF 186

Query: 82  NDHRSWF---------LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVVPPRILLDRT 131
            +              + L+ V+E+D+G Y C I    + S+K   L VV          
Sbjct: 187 RNRVDLTGDISRNDGSIKLQTVKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQRTISP 246

Query: 132 STDVVVREGTEVTLECS 148
           +      +G +  L  +
Sbjct: 247 TP--PTDKGQQGILNGN 261

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 79.9 bits (197), Expect = 7e-18
 Identities = 38/249 (15%), Positives = 66/249 (26%), Gaps = 61/249 (24%)

Query: 22  PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           P +                      C         + W+K         + K   Q  R+
Sbjct: 16  PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK---------NGKEFKQEHRI 66

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPR---ILLDRTST 133
                 ++ W L +  V  +D+G Y C + N     +   +L VV   R   IL      
Sbjct: 67  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPA 126

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
           +     G +V   C      +P++ W +   K  +  G    P L +             
Sbjct: 127 NASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKV------------- 173

Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
                              K   I + +                L + ++     G Y C
Sbjct: 174 ------------------LKHSGINSSNAE-------------VLALFNVTEADAGEYIC 202

Query: 254 VAVNALGET 262
              N +G+ 
Sbjct: 203 KVSNYIGQA 211

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 56.1 bits (135), Expect = 2e-09
 Identities = 22/111 (19%), Positives = 45/111 (40%), Gaps = 10/111 (9%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSI-----HHKVVTQNKR 76
              A   AN +  VG +    C V +  +  + W+K + +           +  V ++  
Sbjct: 119 ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKHSG 178

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
           ++ +  +     L L +V E D G Y+C+  N +   +Q  +L V+   + 
Sbjct: 179 INSSNAEV----LALFNVTEADAGEYICKVSNYIGQANQSAWLTVLPKQQA 225

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C Length = 231

 Score = 49.5 bits (118), Expect = 3e-07
 Identities = 21/155 (13%), Positives = 34/155 (21%), Gaps = 56/155 (36%)

Query: 118 LQVVVPPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
                 P              V     V   C A G P P + W +        NG+   
Sbjct: 10  SNNKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK--------NGKEFK 61

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
                                              +  G   +    +            
Sbjct: 62  Q---------------------------------EHRIGGYKVRNQHW------------ 76

Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +L + S++    G+Y CV  N  G  +    + V
Sbjct: 77  -SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 110

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 80.3 bits (197), Expect = 8e-18
 Identities = 38/277 (13%), Positives = 69/277 (24%), Gaps = 70/277 (25%)

Query: 27  PVANVTATVGKEALMACVVENLREY---KVAWVK----------------MITQTILSIH 67
               V    G    + C  +   +     ++W+K                   + +  + 
Sbjct: 8   THTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVE 67

Query: 68  HKVVTQNK-----RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG------ 116
                ++      R S+      +  L L  V   D G Y CQ+    + ++ G      
Sbjct: 68  SDSYKESFGDFLGRASVANLAAPT--LRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSV 125

Query: 117 --YLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV 174
              +    P   +   T+  V V EG ++T+ C         V W        NY     
Sbjct: 126 VLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYE---- 181

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
                                         +  Y      +         +      +S 
Sbjct: 182 ------------------------------TGTYQPLANKNQFGITWFSSEIAGRASFSG 211

Query: 235 HMTLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
              L IR+  ++   G   C      GE D      +
Sbjct: 212 ARNLVIRAAKITDA-GRVWCELATGQGELDADRSSTI 247

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae} Length = 250

 Score = 49.9 bits (118), Expect = 3e-07
 Identities = 17/129 (13%), Positives = 29/129 (22%), Gaps = 20/129 (15%)

Query: 10  TYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK------------ 57
              K     P           V    G +  M C   +     V W              
Sbjct: 125 VVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANVTWYTGPTFFENYETGT 184

Query: 58  ---MITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTS 113
              +  +    I         R S +   +    L +R  + TD G   C++        
Sbjct: 185 YQPLANKNQFGITWFSSEIAGRASFSGARN----LVIRAAKITDAGRVWCELATGQGELD 240

Query: 114 QKGYLQVVV 122
                 ++ 
Sbjct: 241 ADRSSTILK 249

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 79.1 bits (195), Expect = 1e-17
 Identities = 45/248 (18%), Positives = 70/248 (28%), Gaps = 68/248 (27%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRF     + T   G  A   C        K+ W K           K V+  +   I F
Sbjct: 7   PRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKK---------GKKVSNQRFEVIEF 57

Query: 82  NDHRSWFLHLRDVQ-ETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTS-----TD 134
           +D     L ++ ++   D   Y C   N V   S    L V+   +I     +       
Sbjct: 58  DDGSGSVLRIQPLRTPRDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQL 117

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
            VV      T+ C+A G P+P + W +        +   V                    
Sbjct: 118 KVVERTRTATMLCAASGNPDPEITWFK--------DFLPVDT------------------ 151

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                                   + ++    +L +       L+I        G Y CV
Sbjct: 152 ------------------------SNNNGRIKQLRSESIG--ALQIEQSEESDQGKYECV 185

Query: 255 AVNALGET 262
           A N+ G  
Sbjct: 186 ATNSAGTR 193

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A Length = 212

 Score = 44.8 bits (106), Expect = 9e-06
 Identities = 17/113 (15%), Positives = 31/113 (27%), Gaps = 15/113 (13%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQ 73
                P              + A M C      + ++ W K    +  +  +   K +  
Sbjct: 104 IPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDTSNNNGRIKQLRS 163

Query: 74  NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPP 124
               +          L +   +E+D+G Y C   N+     S    L V    
Sbjct: 164 ESIGA----------LQIEQSEESDQGKYECVATNSAGTRYSAPANLYVRGTK 206

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 80.0 bits (197), Expect = 3e-17
 Identities = 42/324 (12%), Positives = 76/324 (23%), Gaps = 98/324 (30%)

Query: 22  PRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
                    +    G    ++C            WVK             +  ++RV + 
Sbjct: 9   GPEPGQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKD---------GTGLVPSERVLV- 58

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR---------- 130
                   L + +    D G Y C+            ++V   P    D           
Sbjct: 59  ----GPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTG 114

Query: 131 --------------TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI--------- 167
                             + V     V   C A G P P ++W + +G+           
Sbjct: 115 VDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLK-NGREFRGEHRIGGI 173

Query: 168 ---------------------------NYNGEL--------------VPPMLTIPNQLEG 186
                                      N  G +               P +       + 
Sbjct: 174 KLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQT 233

Query: 187 AFVSQTVELHCHTEAFPASLNYWT--NEKGDMIITGDDYEDSRLINGYSCHM------TL 238
           A +   VE HC   +       W    E     +  D      ++     +        L
Sbjct: 234 AVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVL 293

Query: 239 KIRSILSHQFGSYRCVAVNALGET 262
            + ++     G Y C+A N++G +
Sbjct: 294 SLHNVTFEDAGEYTCLAGNSIGFS 317

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 55.0 bits (132), Expect = 8e-09
 Identities = 25/112 (22%), Positives = 41/112 (36%), Gaps = 4/112 (3%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVTQNKRVS 78
              A   AN TA +G +    C V +  +  + W+K +      +       VT  K   
Sbjct: 223 ILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAG 282

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLD 129
               D     L L +V   D G Y C   N++  +    +L V+     L++
Sbjct: 283 ANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFSHHSAWLVVLPAEEELVE 334

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 334

 Score = 41.5 bits (97), Expect = 2e-04
 Identities = 17/145 (11%), Positives = 29/145 (20%), Gaps = 61/145 (42%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPM 177
           +    P     +    +V   G  V L C    G P     W +        +G  + P 
Sbjct: 3   RAAEVPGPEPGQQE-QLVFGSGDAVELSCPPPGGGPMGPTVWVK--------DGTGLVP- 52

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                                            R++ G      
Sbjct: 53  -----------------------------------------------SERVLVGPQ---R 62

Query: 238 LKIRSILSHQFGSYRCVAVNALGET 262
           L++ +      G+Y C         
Sbjct: 63  LQVLNASHEDSGAYSCRQRLTQRVL 87

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 75.7 bits (186), Expect = 2e-16
 Identities = 48/260 (18%), Positives = 83/260 (31%), Gaps = 71/260 (27%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
           PR  E   ++     + A + C VE   E  + W K    ++      H           
Sbjct: 10  PRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEPVSTNEKKSHRVQFK------ 63

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQV-VVPPRILLDRTSTDV 135
              +    ++  ++  +E D G Y C   N V    S+   LQ+ V+           D 
Sbjct: 64  ---DGALFFYRTMQGKKEQDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFR--VEPKDT 118

Query: 136 VVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVE 194
            V +G    LEC    G PEP + W +        +G  +  +  +              
Sbjct: 119 RVAKGETALLECGPPKGIPEPTLIWIK--------DGVPLDDLKAMS------------- 157

Query: 195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV 254
                  F AS      + G+++I+  +  D                       G+Y+C+
Sbjct: 158 -------FGASSRVRIVDGGNLLISNVEPIDE----------------------GNYKCI 188

Query: 255 AVNALGE---TDGFIKVYVN 271
           A N +G    +   + V V 
Sbjct: 189 AQNLVGTRESSYAKLIVQVK 208

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A* Length = 217

 Score = 50.2 bits (120), Expect = 2e-07
 Identities = 23/108 (21%), Positives = 37/108 (34%), Gaps = 8/108 (7%)

Query: 22  PRFAEPVANVTATVGKEALMACV-VENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
             F     +     G+ AL+ C   + + E  + W+K     +  +       + RV I 
Sbjct: 109 DDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIKD-GVPLDDLKAMSFGASSRVRIV 167

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRI 126
              +    L + +V+  D G Y C   N V    S    L V V    
Sbjct: 168 DGGN----LLISNVEPIDEGNYKCIAQNLVGTRESSYAKLIVQVKAAA 211

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 74.8 bits (184), Expect = 4e-16
 Identities = 47/250 (18%), Positives = 82/250 (32%), Gaps = 75/250 (30%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
           PR  E  +++  + G+ A + C  E      + W K    + T       H+++  +  +
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQV-VVPPRILLDRTSTD 134
                 H             D G Y+C   N +    S    L+V ++       +  +D
Sbjct: 70  FFLRIVHGR-------KSRPDEGVYVCVARNYLGEAVSHDASLEVAILRDDFR--QNPSD 120

Query: 135 VVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
           V+V  G    +EC    G+PEP ++W++ DG  ++   E +    TI             
Sbjct: 121 VMVAVGEPAVMECQPPRGHPEPTISWKK-DGSPLDDKDERI----TIRG----------- 164

Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
                               G ++IT     D+                      G Y C
Sbjct: 165 --------------------GKLMITYTRKSDA----------------------GKYVC 182

Query: 254 VAVNALGETD 263
           V  N +GE +
Sbjct: 183 VGTNMVGERE 192

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A Length = 212

 Score = 51.0 bits (122), Expect = 8e-08
 Identities = 21/109 (19%), Positives = 37/109 (33%), Gaps = 16/109 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
             F +  ++V   VG+ A+M C       E  ++W K             +         
Sbjct: 112 DDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKK---------DGSPLDDKDERITI 162

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRIL 127
                   L +   +++D G Y+C   N V    S+   L V+  P  +
Sbjct: 163 RGGK----LMITYTRKSDAGKYVCVGTNMVGERESEVAELTVLERPSFV 207

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A Length = 231

 Score = 74.1 bits (181), Expect = 1e-15
 Identities = 31/181 (17%), Positives = 57/181 (31%), Gaps = 17/181 (9%)

Query: 29  ANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW 87
             V    GK  ++ C      + Y + W                 Q   + +T +D R  
Sbjct: 8   PLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGR 67

Query: 88  F----------LHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPPR--ILLDRTST 133
                      L L + Q  D   Y+C +      + +    L V   P    +     T
Sbjct: 68  SPPYQLDSQGRLVLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGT 127

Query: 134 DVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
             V+ +  +    C++  G P P + W R +G+ +    E+ P        +  A    +
Sbjct: 128 LSVMEDSAQEIATCNSRNGNPAPKITWYR-NGQRLEVPVEMNPEGYMTSRTVREASGLLS 186

Query: 193 V 193
           +
Sbjct: 187 L 187

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 73.3 bits (180), Expect = 1e-15
 Identities = 31/161 (19%), Positives = 47/161 (29%), Gaps = 21/161 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P       N    VG  A   C         + W K           KV     R ++  
Sbjct: 7   PEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKN--------GKKVSGTQSRYTVLE 58

Query: 82  NDHRSWFLHLRDVQ-ETDRGWYMCQ-INTV-PMTSQKGYLQVVV-------PPRILLDRT 131
                  L +  V+   D   Y C   N V    S    L +          P I   + 
Sbjct: 59  QPGGISILRIEPVRAGRDDAPYECVAENGVGDAVSADATLTIYEGDKTPAGFPVIT--QG 116

Query: 132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE 172
               V+  G  V + C A+G P P + W + +   ++ +  
Sbjct: 117 PGTRVIEVGHTVLMTCKAIGNPTPNIYWIK-NQTKVDMSNP 156

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 52.5 bits (126), Expect = 2e-08
 Identities = 25/143 (17%), Positives = 38/143 (26%), Gaps = 54/143 (37%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
              PP I+  R   +  VR G   +  C+A G P P + WR+ +GK ++           
Sbjct: 3   GAHPPEII--RKPQNQGVRVGGVASFYCAARGDPPPSIVWRK-NGKKVSGTQ---SRYTV 56

Query: 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK 239
           +     G      +E                              D              
Sbjct: 57  LEQ--PGGISILRIE------------------------PVRAGRDD------------- 77

Query: 240 IRSILSHQFGSYRCVAVNALGET 262
                      Y CVA N +G+ 
Sbjct: 78  ---------APYECVAENGVGDA 91

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A Length = 212

 Score = 46.7 bits (111), Expect = 2e-06
 Identities = 20/112 (17%), Positives = 33/112 (29%), Gaps = 15/112 (13%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
                P   +        VG   LM C         + W+K         +   V  +  
Sbjct: 106 TPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIK---------NQTKVDMSNP 156

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRI 126
                +      L + + +E D+G Y C   N++    S+   L V V    
Sbjct: 157 RYSLKDGF----LQIENSREEDQGKYECVAENSMGTEHSKATNLYVKVRRVG 204

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 74.2 bits (182), Expect = 3e-15
 Identities = 39/280 (13%), Positives = 69/280 (24%), Gaps = 96/280 (34%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREY----------KVAWVKMITQTILSIHHKVV 71
                 V    A    +  +    E ++ Y          KV W           +   +
Sbjct: 99  KELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAI 149

Query: 72  TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV-------- 122
             + RV       + W L + +    D+G Y+ ++ +      +   L            
Sbjct: 150 RYSDRVKTGVTGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEF 208

Query: 123 ------------PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
                         R+L       V ++EG  + L C+  G P P V+W           
Sbjct: 209 QRLKQAAIAEKNRARVLG-GLPDVVTIQEGKALNLTCNVWGDPPPEVSWL---------- 257

Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
                                                     K +  +  DD+ + +   
Sbjct: 258 ------------------------------------------KNEKALASDDHCNLKFEA 275

Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           G +      I  + +   G Y  V  N  G       V V
Sbjct: 276 GRTA--YFTINGVSTADSGKYGLVVKNKYGSETSDFTVSV 313

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 66.1 bits (161), Expect = 1e-12
 Identities = 30/276 (10%), Positives = 75/276 (27%), Gaps = 82/276 (29%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P F E + +   T     L+ C V N+++   + W K           + ++ +++    
Sbjct: 8   PHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYK---------DEREISVDEKHDFK 57

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
                   L + +  + D G Y   + +       +  L       ++++      +   
Sbjct: 58  DGICT---LLITEFSKKDAGIYEVILKDDRGKDKSRLKLVDEAFKELMME--VCKKIALS 112

Query: 140 GTEVTLECSA----------VGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
            T++ ++ +A              +  V W   +G AI Y+  +                
Sbjct: 113 ATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSAIRYSDRVK--------------- 156

Query: 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
                                       +TG+                L+I     +  G
Sbjct: 157 --------------------------TGVTGEQI-------------WLQINEPTPNDKG 177

Query: 250 SYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSR 285
            Y     +        + +     D    + +++ +
Sbjct: 178 KYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQ 213

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens} Length = 317

 Score = 51.1 bits (122), Expect = 2e-07
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
           EK            VT   GK   + C V      +V+W+K         + K +  +  
Sbjct: 218 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK---------NEKALASDDH 268

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
            ++ F   R+ +  +  V   D G Y   + N     +    + V +P
Sbjct: 269 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 316

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 71.6 bits (175), Expect = 3e-15
 Identities = 32/250 (12%), Positives = 60/250 (24%), Gaps = 74/250 (29%)

Query: 25  AEPVANVTATVGKEALMACVVENLR--EYKVAWVKMITQTILSIHHKVVTQNKRVSITFN 82
           A  V      +G + L+ C + +         W+K                   +     
Sbjct: 2   AGTVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK---------------GGVVLKEDAL 46

Query: 83  DHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTE 142
             +      +   +   G Y C    +P       +Q+  PPR+      +   + EG  
Sbjct: 47  PGQK--TEFKVDSDDQWGEYSCVF--LPEPMGTANIQLHGPPRVK--AVKSSEHINEGET 100

Query: 143 VTLECSAVGYPEP-YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEA 201
             L C +   P     AW +                                        
Sbjct: 101 AMLVCKSESVPPVTDWAWYKITD------------------------------------- 123

Query: 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI-LSHQFGSYRCVAVNALG 260
                        +     +  E    ++       L I ++ +    G YRC   ++ G
Sbjct: 124 ------------SEDKALMNGSESRFFVSSSQGRSELHIENLNMEADPGQYRCNGTSSKG 171

Query: 261 ETDGFIKVYV 270
                I + V
Sbjct: 172 SDQAIITLRV 181

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 51.6 bits (123), Expect = 4e-08
 Identities = 27/220 (12%), Positives = 48/220 (21%), Gaps = 79/220 (35%)

Query: 131 TSTDVVVREGTEVTLECSAVGYPEP--YVAWRREDGKAIN----YNGEL----------- 173
           T    V   G+++ L CS            W +  G  +        +            
Sbjct: 4   TVFTTVEDLGSKILLTCSLNDSATEVTGHRWLK-GGVVLKEDALPGQKTEFKVDSDDQWG 62

Query: 174 -------------------VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEK 213
                               PP +      E     +T  L C +E+ P   ++ W    
Sbjct: 63  EYSCVFLPEPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKIT 122

Query: 214 GDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
                   +  +SR  ++       L I ++                             
Sbjct: 123 DSEDKALMNGSESRFFVSSSQGRSELHIENLNMEA------------------------- 157

Query: 273 VDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                           G Y C  ++    S    I + V 
Sbjct: 158 --------------DPGQYRCNGTSS-KGSDQAIITLRVR 182

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 184

 Score = 41.6 bits (97), Expect = 8e-05
 Identities = 19/111 (17%), Positives = 38/111 (34%), Gaps = 7/111 (6%)

Query: 13  KTKCEKPDMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVV 71
               +    PR     ++     G+ A++ C  E        AW K+      ++ +   
Sbjct: 75  TANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNG-- 132

Query: 72  TQNKRVSITFNDHRSWFLHLRDVQ-ETDRGWYMCQ-INTVPMTSQKGYLQV 120
               R  ++ +      LH+ ++  E D G Y C   ++         L+V
Sbjct: 133 -SESRFFVS-SSQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 181

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 70.3 bits (172), Expect = 2e-14
 Identities = 36/272 (13%), Positives = 65/272 (23%), Gaps = 96/272 (35%)

Query: 30  NVTATVGKEALMACVVENLREY----------KVAWVKMITQTILSIHHKVVTQNKRVSI 79
           +  A    +  +    E ++ Y          KV W           +   +  + RV  
Sbjct: 2   SSIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH---------NGSAIRYSDRVKT 52

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV---------------- 122
                + W L + +    D+G Y+ ++ +      +   L                    
Sbjct: 53  GVTGEQIW-LQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAI 111

Query: 123 ----PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
                 R+L       V ++EG  + L C+  G P P V+W +        N + +    
Sbjct: 112 AEKNRARVLGGLPD-VVTIQEGKALNLTCNVWGDPPPEVSWLK--------NEKALAQ-- 160

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                                                     D           +     
Sbjct: 161 -----------------------------------------TDHCNLKFEAGRTA---YF 176

Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            I  + +   G Y  V  N  G       V V
Sbjct: 177 TINGVSTADSGKYGLVVKNKYGSETSDFTVSV 208

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens} Length = 212

 Score = 50.6 bits (121), Expect = 1e-07
 Identities = 22/108 (20%), Positives = 37/108 (34%), Gaps = 10/108 (9%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
           EK            VT   GK   + C V      +V+W+K         + K + Q   
Sbjct: 113 EKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWLK---------NEKALAQTDH 163

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
            ++ F   R+ +  +  V   D G Y   + N     +    + V +P
Sbjct: 164 CNLKFEAGRTAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVSVFIP 211

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 70.1 bits (171), Expect = 2e-14
 Identities = 36/245 (14%), Positives = 57/245 (23%), Gaps = 66/245 (26%)

Query: 26  EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILS-IHHKVVTQNKRVSITFNDH 84
           E V           L+      L     AW K  T  I   I   V   N   +      
Sbjct: 5   EAV-PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63

Query: 85  RSWF-----LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP-PRILLDRTSTDVVVR 138
           R        L  + +   D G Y   +        +  ++  V  P        T+  V+
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVK 123

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
           E   VTL C +       + W          N + +                        
Sbjct: 124 ELDSVTLTCLS-NDIGANIQWLF--------NSQSLQL---------------------- 152

Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
                            M ++ ++               L+I  I     G Y+C   N 
Sbjct: 153 --------------TERMTLSQNNS-------------ILRIDPIKREDAGEYQCEISNP 185

Query: 259 LGETD 263
           +    
Sbjct: 186 VSVRR 190

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 46.2 bits (109), Expect = 3e-06
 Identities = 30/205 (14%), Positives = 54/205 (26%), Gaps = 31/205 (15%)

Query: 130 RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
             +    V E   V L    +       AW         Y G        I   +  + +
Sbjct: 4   IEAVPPQVAEDNNVLLLVHNLPLALGAFAW---------YKGNTTAIDKEIARFVPNSNM 54

Query: 190 SQTVELHCHTEAF--PASLNYWTNEKGD----MIITGDDYEDSRLINGYSCHMTLKIRSI 243
           + T + +   E      SL +      D     +   D+                  +  
Sbjct: 55  NFTGQAYSGREIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPF 114

Query: 244 LSHQFGSYR-------CVAVNALGETDGFIKVYVNL---------VDGDIFQIRKMSRLH 287
           L     + +           N +G    ++    +L          +  I +I  + R  
Sbjct: 115 LQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLSQNNSILRIDPIKRED 174

Query: 288 MGAYLCIASNGVVPSVSHRIMVTVH 312
            G Y C  SN V    S+ I + + 
Sbjct: 175 AGEYQCEISNPVSVRRSNSIKLDII 199

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A* Length = 208

 Score = 40.8 bits (95), Expect = 2e-04
 Identities = 18/111 (16%), Positives = 41/111 (36%), Gaps = 15/111 (13%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
             + +    V N T        + C+  ++    + W+          + + +   +R++
Sbjct: 108 QPVTQPFLQVTNTTVKELDSVTLTCLSNDI-GANIQWLF---------NSQSLQLTERMT 157

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQVVVPPRIL 127
           ++ N+     L +  ++  D G Y C+I N V    S    L ++  P   
Sbjct: 158 LSQNNS---ILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIFDPHHH 205

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 70.5 bits (172), Expect = 3e-14
 Identities = 21/92 (22%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 89  LHLRDVQETDRGWYMCQI-----NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
           L L+   E +   + C         +   +Q   L+V+  PR+       +    E ++ 
Sbjct: 144 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 203

Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
           T  C A G P P +   + DG      GE V 
Sbjct: 204 TPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 234

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 66.6 bits (162), Expect = 7e-13
 Identities = 38/296 (12%), Positives = 70/296 (23%), Gaps = 79/296 (26%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNK 75
              P+   P       V  +  + C ++ L    E +V       +    ++  V   N 
Sbjct: 4   ATPPQLVSPR---VLEVDTQGTVVCSLDGLFPVSEAQVHLALGDQR----LNPTVTYGND 56

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTD 134
             S   +   +        ++       C +            + +   P   +    T 
Sbjct: 57  SFSAKASVSVTA-------EDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNV--ILTK 107

Query: 135 VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL--------------------- 173
             V EGTEVT++C A  +P   V       + +    +L                     
Sbjct: 108 PEVSEGTEVTVKCEA--HPRAKVTLNGVPAQPLGPRAQLLLKATPEDNGRSFSCSATLEV 165

Query: 174 ----------------VPPMLTIPNQLEGAFVS--QTVELHCHTEAFPASLNYWTNEKGD 215
                             P L   +                C     P        +   
Sbjct: 166 AGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF 225

Query: 216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
            +  G+                    ++     G+Y C A +  GE    + V V 
Sbjct: 226 PLPIGE------------------SVTVTRDLEGTYLCRARSTQGEVTREVTVNVL 263

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A* Length = 265

 Score = 39.7 bits (92), Expect = 6e-04
 Identities = 36/287 (12%), Positives = 58/287 (20%), Gaps = 122/287 (42%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGY---PEPYVAWRREDGK------------ 165
             PP+++  R      +   T+ T+ CS  G     E  V     D +            
Sbjct: 4   ATPPQLVSPRV-----LEVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSF 58

Query: 166 ---------------------AINYNGEL-----------VPPMLTIPNQ--LEGAFVSQ 191
                                 I  N                P + +      EG     
Sbjct: 59  SAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEG----T 114

Query: 192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY 251
            V + C            T         G   +             L +++       S+
Sbjct: 115 EVTVKCEAHPRAK----VTLNGVPAQPLGPRAQ-------------LLLKATPEDNGRSF 157

Query: 252 RCVAVNALGETDGFIKVYVNL------------------------------VDG------ 275
            C A   +            L                                G      
Sbjct: 158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL 217

Query: 276 ----------DIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                      I +   ++R   G YLC A +     V+  + V V 
Sbjct: 218 KCLKDGTFPLPIGESVTVTRDLEGTYLCRARST-QGEVTREVTVNVL 263

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 69.1 bits (168), Expect = 1e-13
 Identities = 32/297 (10%), Positives = 77/297 (25%), Gaps = 62/297 (20%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
           N  A +G+     C    + +  ++        +++   K+    + ++    +   W  
Sbjct: 38  NDMAALGEPFSAKCPP--IEDSLLSHRYNDKDNVVNWE-KIGKTRRPLNRRVKNGDLWIA 94

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
           +           Y+C + T      +G ++  +         + ++   +   + L C  
Sbjct: 95  NY--TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGI 152

Query: 150 V-GYPEPYVAWRREDGKAINYNGELVPP---MLTIPN-------------------QLEG 186
           +       + W + + + +  +G         L I N                       
Sbjct: 153 LYAKHYNNITWYK-NNQELIIDGTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKND 211

Query: 187 AFVSQTV----------------------------ELHCHTEAFPASLN----YWTNEKG 214
             VS+                               + C   +    ++     W N  G
Sbjct: 212 IVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWENPSG 271

Query: 215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS-YRCVAVNALGETDGFIKVYV 270
            +I            +G     TL   ++     G+ Y C   N   +      V +
Sbjct: 272 WIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL 328

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus} Length = 329

 Score = 42.9 bits (100), Expect = 7e-05
 Identities = 27/229 (11%), Positives = 52/229 (22%), Gaps = 65/229 (28%)

Query: 94  VQETDRG-WYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY 152
             E +   ++    +T+P    K      + P  +    + + +   G   + +C  +  
Sbjct: 3   DIENEITEFFNKMRDTLPAKDSK-----WLNPSCM-FGGTMNDMAALGEPFSAKCPPIED 56

Query: 153 ---------PEPYVAWRREDGK------------------------------AINYNGE- 172
                     +  V W +                                      NG+ 
Sbjct: 57  SLLSHRYNDKDNVVNWEKIGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGDC 116

Query: 173 ---------LVPPMLTIPNQLEGAFVSQTVELHCH-TEAFPASLNYWTNEKGDMIITGDD 222
                      PP         G      ++L+C    A   +   W   K +  +  D 
Sbjct: 117 VQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWY--KNNQELIID- 173

Query: 223 YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
              ++          L I +      G Y C            I V   
Sbjct: 174 --GTKYSQSGQ---NLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRC 217

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A Length = 182

 Score = 66.8 bits (163), Expect = 1e-13
 Identities = 18/150 (12%), Positives = 49/150 (32%), Gaps = 16/150 (10%)

Query: 31  VTATVGKEALMACVVENLREYK--VAWVKMITQTIL---SIHHKVVTQNKRVSITFNDHR 85
               +G++  +      + +    + W K   +  +       +   +     +  N   
Sbjct: 9   TWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYKLFKN--- 65

Query: 86  SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
              L ++ ++  D+  Y   I +T      +    + +      +R S   +       T
Sbjct: 66  -GTLKIKHLKTDDQDIYKVSIYDTKGKNVLEKIFDLKI-----QERVSKPKISWTCINTT 119

Query: 145 LECSAVGYPEPYVAWRREDGKAINYNGELV 174
           L C  +   +P +   + DGK +  +  ++
Sbjct: 120 LTCEVMNGTDPELNLYQ-DGKHLKLSQRVI 148

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 68.2 bits (166), Expect = 3e-13
 Identities = 41/315 (13%), Positives = 83/315 (26%), Gaps = 82/315 (26%)

Query: 26  EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
           E    + ++  +  +  C +  N  +  + W K  ++T        V+  +   I  +  
Sbjct: 10  EEKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTP-------VSTEQASRIHQHKE 62

Query: 85  RSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILL--DRTSTDVVVREGT 141
           +   L     +  D G Y C + N+      K   + V     L    +      +    
Sbjct: 63  K---LWFVPAKVEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAG 119

Query: 142 EVTLECS------AVGYPEPYVAWRR-------EDGKAINYNGELV-------------- 174
           +  L C             P + W +       ++         L+              
Sbjct: 120 DGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIHFSGVKDRLIVMNVAEKHRGNYTC 179

Query: 175 ----------------------------PPMLTIP-NQLEGAFVSQTVELHCHTEAFPAS 205
                                        P++  P N+     +   ++L C+     + 
Sbjct: 180 HASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD 239

Query: 206 LNYWTNEKGDMIITGDD---------YEDSRLINGYSCHMTLKIRSI-LSHQFGSYRCVA 255
           + YW       +I  DD          E+       +    L I  I        + C A
Sbjct: 240 IAYWK--WNGSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFA 297

Query: 256 VNALGETDGFIKVYV 270
            N  G    +I++  
Sbjct: 298 KNTHGIDAAYIQLIY 312

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R Length = 315

 Score = 41.2 bits (96), Expect = 3e-04
 Identities = 22/198 (11%), Positives = 42/198 (21%), Gaps = 62/198 (31%)

Query: 131 TSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGK------------------------ 165
               +V          C          + W ++D K                        
Sbjct: 11  EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRIHQHKEKLWFVPAK 70

Query: 166 ----------AINYNGEL----------VPPMLTIPNQL---EGAFVSQTVELHCHTEAF 202
                       N +  L            P L    Q    +   V+    L C    F
Sbjct: 71  VEDSGHYYCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEF 130

Query: 203 PASLNY------WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV 256
             + N       W  +   +++    +   +          L + ++     G+Y C A 
Sbjct: 131 FKNENNELPKLQWYKDCKPLLLDNIHFSGVKD--------RLIVMNVAEKHRGNYTCHAS 182

Query: 257 NALGETDGFIKVYVNLVD 274
                    I   +  + 
Sbjct: 183 YTYLGKQYPITRVIEFIT 200

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens} Length = 193

 Score = 65.4 bits (159), Expect = 6e-13
 Identities = 26/153 (16%), Positives = 52/153 (33%), Gaps = 13/153 (8%)

Query: 31  VTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR---- 85
           V   +G+   +        +   + W+    +T L+      T++  + +T         
Sbjct: 8   VNGILGESVTLPLEFPAGEKVNFITWLF--NETSLAFIVPHETKSPEIHVTNPKQGKRLN 65

Query: 86  ---SWFLHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRILLDRTSTDVVVREGT 141
              S+ L L +++  D G Y  QI+T        Y L+++   R +     + +      
Sbjct: 66  FTQSYSLQLSNLKMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTC 125

Query: 142 EVTLECSAV-GYPEPYVAWRREDGKAINYNGEL 173
           E+ L CS           W    G  ++    L
Sbjct: 126 ELHLTCSVEDADDNVSFRWEA-LGNTLSSQPNL 157

>2ptt_A CD48 antigen; CD244, CD48, NK cell receptor, X-RAY, immune system; 1.63A {Mus musculus} PDB: 2ptv_A Length = 110

 Score = 62.9 bits (153), Expect = 8e-13
 Identities = 21/108 (19%), Positives = 42/108 (38%), Gaps = 10/108 (9%)

Query: 23  RFAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNK------ 75
           R    + ++ A  G    +    + L  Y+ + W+    Q IL  ++             
Sbjct: 5   RARGSIPDINAYTGSNVTLKIHKDPLGPYRRITWLHTKNQKILEYNYNSTKTIFESEFKG 64

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVP 123
           RV +   +  +  LH+ +V++ D+G Y  ++        K  L+V  P
Sbjct: 65  RVYL---EENNGALHISNVRKEDKGTYYMRVLRETENELKITLEVFDP 109

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B* Length = 349

 Score = 66.4 bits (161), Expect = 1e-12
 Identities = 45/333 (13%), Positives = 71/333 (21%), Gaps = 76/333 (22%)

Query: 8   GCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIH 67
            C  +     +       EP                   +     + W        L   
Sbjct: 5   RCDDWGLDTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEP 64

Query: 68  HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV----P 123
                   R+S          L  R     D G Y C +        K    + V     
Sbjct: 65  INFRLPENRISK-----EKDVLWFRPTLLNDTGNYTCMLRN-TTYCSKVAFPLEVVQKDS 118

Query: 124 PRILLDRTSTDVVVREGTEVTLEC-----SAVGYPEPYVAWRREDGK------------- 165
                 +     +  E     + C           +P + W     K             
Sbjct: 119 CFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGCYKIQNFNNVIPEGMN 178

Query: 166 ------------------AINYNGE------------------LVPPMLTIPNQLEGAFV 189
                                 NG                    VPP++  PN       
Sbjct: 179 LSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEK 238

Query: 190 S--QTVELHCH----TEAFPASLNYWT--NEKGDMIITGDDYEDSRLIN---GYSCHMTL 238
              + + + C           +  +WT   +K D I       +S   +     +    L
Sbjct: 239 EPGEELLIPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQIL 298

Query: 239 KIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
            I+ +       SY C A +A GE     KV  
Sbjct: 299 SIKKVTSEDLKRSYVCHARSAKGEVAKAAKVKQ 331

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 65.8 bits (160), Expect = 2e-12
 Identities = 27/261 (10%), Positives = 61/261 (23%), Gaps = 76/261 (29%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P   E V NV           C      + + +W K          +     + R+ +  
Sbjct: 4   PFTKEVVVNVDDDGVISLNFECDKMT-PKSEFSWSK---------DYVSTEDSPRLEVES 53

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI---------NTVPMTSQKGYLQVVVPPR--ILLDR 130
             +++  +  +D+   D G Y C +           +     K  L +    +   +  +
Sbjct: 54  KGNKT-KMTFKDLGMDDLGIYSCDVTDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVK 112

Query: 131 TSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV 189
           +   V + E  +V     A        V +          N + +               
Sbjct: 113 SELAVEILEKGQVRFWMQAEKLSGNAKVNYIF--------NEKEIFE------------- 151

Query: 190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG 249
                                  K  M I  +              + + +  +     G
Sbjct: 152 ---------------------GPKYKMHIDRNT-----------GIIEMFMEKLQDEDEG 179

Query: 250 SYRCVAVNALGETDGFIKVYV 270
           +Y     +        + +  
Sbjct: 180 TYTFQLQDGKATNHSTVVLVG 200

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens} Length = 312

 Score = 58.5 bits (141), Expect = 5e-10
 Identities = 27/281 (9%), Positives = 57/281 (20%), Gaps = 86/281 (30%)

Query: 10  TYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHH 68
                  E        +    V      +       E L    KV ++          + 
Sbjct: 96  RLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF---------NE 146

Query: 69  KVVTQNKRVSITF-NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
           K + +  +  +    +     + +  +Q+ D G Y  Q+ +          L   V  ++
Sbjct: 147 KEIFEGPKYKMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKL 206

Query: 127 LLDRTST----------------DVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAINY 169
             +                       V     V L+C       E ++ W +        
Sbjct: 207 QKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWYK-------- 258

Query: 170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI 229
           +   +                                                       
Sbjct: 259 DEREISV------------------------------------DEKHDFKDGIC------ 276

Query: 230 NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
                  TL I        G Y  +  +  G+    +K+  
Sbjct: 277 -------TLLITEFSKKDAGIYEVILKDDRGKDKSRLKLVD 310

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 66.4 bits (161), Expect = 2e-12
 Identities = 22/92 (23%), Positives = 34/92 (36%), Gaps = 6/92 (6%)

Query: 89  LHLRDVQETDRGWYMCQ-INTV----PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEV 143
           L L+   E +   + C     V       +Q   L+V+  PR+       +    E ++ 
Sbjct: 329 LLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQ 388

Query: 144 TLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
           T  C A G P P +   + DG      GE V 
Sbjct: 389 TPMCQAWGNPLPELKCLK-DGTFPLPIGESVT 419

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 64.9 bits (157), Expect = 6e-12
 Identities = 40/309 (12%), Positives = 74/309 (23%), Gaps = 66/309 (21%)

Query: 1   MAGKFGGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT 60
              +     +               + V+     V  +  + C ++ L     A V +  
Sbjct: 168 QGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227

Query: 61  QTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQ 119
                       Q    ++T+ +          V   D G         +   SQ+    
Sbjct: 228 GD----------QRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT 277

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW-----------------RRE 162
           V +      +   T   V EGTEVT++C A    +  +                     +
Sbjct: 278 VTIYSFPAPNVILTKPEVSEGTEVTVKCEAHPRAKVTLNGVPAQPLGPRAQLLLKATPED 337

Query: 163 DGK-----AINYNGE-------------LVPPMLTIPN--QLEGAFVSQTVELHCHTEAF 202
           +G+     A                   L  P L   +         +      C     
Sbjct: 338 NGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGN 397

Query: 203 PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
           P        +    +  G+                    ++     G+Y C A +  GE 
Sbjct: 398 PLPELKCLKDGTFPLPIGE------------------SVTVTRDLEGTYLCRARSTQGEV 439

Query: 263 DGFIKVYVN 271
              + V V 
Sbjct: 440 TREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 47.2 bits (111), Expect = 3e-06
 Identities = 21/184 (11%), Positives = 39/184 (21%), Gaps = 52/184 (28%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR------------------ 160
           Q  V P          V++  G  V + CS        +                     
Sbjct: 1   QTSVSPS--------KVILPRGGSVLVTCSTSCDQPMLLGIETPLPKKELLLPGNNRKVY 52

Query: 161 -----REDG--------------KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEA 201
                +ED                         P  + +        V + + L C  E 
Sbjct: 53  ELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEG 112

Query: 202 -FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
             P +       +G+  +  +              +T  +     H   ++ C     L 
Sbjct: 113 GAPRANLTVVLLRGEKELKREPAVGEPA------EVTTTVLVRRDHHGANFSCRTELDLR 166

Query: 261 ETDG 264
               
Sbjct: 167 PQGL 170

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 44.9 bits (105), Expect = 2e-05
 Identities = 48/386 (12%), Positives = 80/386 (20%), Gaps = 135/386 (34%)

Query: 30  NVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRS 86
                VGK   + C VE         V  ++           K + +   V         
Sbjct: 95  PSWQPVGKNLTLRCQVEGGAPRANLTVVLLR---------GEKELKREPAVGEPAEVT-- 143

Query: 87  WFLHLRDVQETDRGWYMCQ---------INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
               +   ++     + C+         +     TS    LQ  V P     +  +  V+
Sbjct: 144 --TTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPP-QLVSPRVL 200

Query: 138 REGTEVTLECSAVG---YPEPYVAWRREDGK----------------------------- 165
              T+ T+ CS  G     E  V     D +                             
Sbjct: 201 EVDTQGTVVCSLDGLFPVSEAQVHLALGDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQR 260

Query: 166 --AINYNGE-----------LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNE 212
                  G               P   +            V + C  EA P +       
Sbjct: 261 LTCAVILGNQSQETLQTVTIYSFPAPNVILTKPEVSEGTEVTVKC--EAHPRAKVTLNGV 318

Query: 213 KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL 272
               +                    L +++       S+ C A   +            L
Sbjct: 319 PAQPLGPR---------------AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTREL 363

Query: 273 V------------------------------------------DGDIF----QIRKMSRL 286
                                                      DG       +   ++R 
Sbjct: 364 RVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTFPLPIGESVTVTRD 423

Query: 287 HMGAYLCIASNGVVPSVSHRIMVTVH 312
             G YLC A +     V+  + V V 
Sbjct: 424 LEGTYLCRARS-TQGEVTREVTVNVL 448

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4 Length = 450

 Score = 43.7 bits (102), Expect = 5e-05
 Identities = 35/295 (11%), Positives = 62/295 (21%), Gaps = 33/295 (11%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
            V    G   L+ C     +   +                   +            +   
Sbjct: 8   KVILPRGGSVLVTCSTSCDQPMLLGI-----------------ETPLPKKELLLPGNNRK 50

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
                   +    MC  N     S       V      ++          G  +TL C  
Sbjct: 51  VYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQV 110

Query: 150 VG-YPEPY--VAWRREDGKAIN---YNGELVPPMLTIPNQLE--GAFVSQTVELHCHTEA 201
            G  P     V   R   K +      GE      T+  + +  GA  S   EL    + 
Sbjct: 111 EGGAPRANLTVVLLR-GEKELKREPAVGEPAEVTTTVLVRRDHHGANFSCRTELDLRPQG 169

Query: 202 FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM----TLKIRSILSHQFGSYRCVAVN 257
                N  T+    +          +L++     +    T+             +     
Sbjct: 170 LELFEN--TSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLAL 227

Query: 258 ALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
                +  +    +                     C    G   S      VT++
Sbjct: 228 GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQ-SQETLQTVTIY 281

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 65.8 bits (159), Expect = 3e-12
 Identities = 47/325 (14%), Positives = 97/325 (29%), Gaps = 33/325 (10%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVS 78
            P       ++  +V     +   V N+ ++  + +  +     + ++  +      R+ 
Sbjct: 221 KPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRIL 280

Query: 79  ITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV---VPPRILLDRTSTD 134
           +   D    F + +  +++ D G Y+C  ++     +   +Q     V     + R+ T 
Sbjct: 281 LNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTV 340

Query: 135 VVVREGTEVTLECSAVGYPEPYVA-WRREDGKAINYNGELVPPMLTIPNQLEGAFV---- 189
           V    G+ V + C         +  W   +G        LV     +  Q EG       
Sbjct: 341 VKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLLEE 400

Query: 190 ----SQTVELH-----------CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS- 233
               + TV L+           C T            +  +         +   + G + 
Sbjct: 401 PGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKIIEGEPNLKVPGNVTAVLGETL 460

Query: 234 ---CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIF---QIRKMSRLH 287
              CH   K  S   +              + +G  K +VN  +        +  ++R  
Sbjct: 461 KVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSRLVSLTLNLVTRAD 520

Query: 288 MGAYLCIASNGVVPSVSHRIMVTVH 312
            G Y C    G     +  + V V 
Sbjct: 521 EGWYWCGVKQGHFYGETAAVYVAVE 545

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 64.2 bits (155), Expect = 1e-11
 Identities = 38/336 (11%), Positives = 79/336 (23%), Gaps = 79/336 (23%)

Query: 6   GGGCTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWV-----KMIT 60
                 F    E    P         T  +G+   + C  +     K   +         
Sbjct: 97  NSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPV 156

Query: 61  QTILSIHHKVVTQNKRVSITFND--HRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGY 117
             I S  +       R+ +         + + +  ++ +D G Y+CQ  +      +   
Sbjct: 157 LVIDSSGYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNAD 216

Query: 118 LQVVVPPRILLDRTSTDVV-------VREGTEVTLECSAVGYPEPYVAWRREDGKAINYN 170
           LQV+ P   L+       V                 C         V       +A  + 
Sbjct: 217 LQVLKPEPELVYEDLRGSVTFHCALGPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFE 276

Query: 171 GELV--------PPMLTIPN---------------------------------------- 182
           G ++           + I                                          
Sbjct: 277 GRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEESTIPR 336

Query: 183 --QLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKG------DMIITGDDYEDSRLINGYS 233
              +       +V + C      + S+ YW   +G       +++  + +  ++     S
Sbjct: 337 SPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLS 396

Query: 234 -------CHMTLKIRSILSHQFGSYRCVAVNALGET 262
                     T+ +  + S   G Y C+        
Sbjct: 397 LLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWR 432

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 58.5 bits (140), Expect = 9e-10
 Identities = 26/123 (21%), Positives = 40/123 (32%), Gaps = 3/123 (2%)

Query: 27  PVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
              NVTA +G+   + C        Y+  W K       ++  +    +K       + R
Sbjct: 448 VPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKAFVNCDENSR 507

Query: 86  SWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTL 145
              L L  V   D GWY C +       +   + V V  R      S DV + +      
Sbjct: 508 LVSLTLNLVTRADEGWYWCGVKQGHFYGETAAVYVAVEERK--AAGSRDVSLAKADAAPD 565

Query: 146 ECS 148
           E  
Sbjct: 566 EKV 568

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 56.9 bits (136), Expect = 3e-09
 Identities = 21/191 (10%), Positives = 48/191 (25%), Gaps = 15/191 (7%)

Query: 11  YFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKV 70
               +    +          V    G    + C         + +  +           +
Sbjct: 321 IQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLL 380

Query: 71  VTQNK--------RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV 121
           V            R+S+        F + L  +   D G+Y C  N   +      ++++
Sbjct: 381 VDSEGWVKAQYEGRLSLLEEPGNGTFTVILNQLTSRDAGFYWCLTNGDTLWRTTVEIKII 440

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECS----AVGYPEPYVAWRREDGKAINYNGELVPPM 177
                L  +   +V    G  + + C        Y + +  W     +A+    E     
Sbjct: 441 EGEPNL--KVPGNVTAVLGETLKVPCHFPCKFSSYEKYWCKWNNTGCQALPSQDEGPSKA 498

Query: 178 LTIPNQLEGAF 188
               ++     
Sbjct: 499 FVNCDENSRLV 509

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J Length = 585

 Score = 54.6 bits (130), Expect = 2e-08
 Identities = 25/147 (17%), Positives = 44/147 (29%), Gaps = 13/147 (8%)

Query: 30  NVTATVGKEALMACVVENL---REYKVAWVK-----MITQTILSIHHKVVTQNKRVSITF 81
            V +  G    + C        R  +  W +          I S  +       R ++T 
Sbjct: 9   EVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTN 68

Query: 82  NDHRSWF-LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVRE 139
                 F +++  + + D G Y C +       S    L+V   P +L    +    V  
Sbjct: 69  FPENGTFVVNIAQLSQDDSGRYKCGLGINSRGLSFDVSLEVSQGPGLL--NDTKVYTVDL 126

Query: 140 GTEVTLECSAVGYPEPYVA-WRREDGK 165
           G  VT+ C              ++ G 
Sbjct: 127 GRTVTINCPFKTENAQKRKSLYKQIGL 153

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 64.8 bits (157), Expect = 5e-12
 Identities = 29/223 (13%), Positives = 50/223 (22%), Gaps = 44/223 (19%)

Query: 91  LRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV 150
           L+  +E   G    Q           ++         L     +  V  G +V L C   
Sbjct: 124 LQRWEEEGLGGVPEQKLQCHGQGPLAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVE 183

Query: 151 GYPEPYVAWRREDGK---------------------------------AINYNGE----- 172
           G       W   + +                                 A N  G      
Sbjct: 184 GRGLEQAGWILTELEQSATVMKSGGLPSLGLTLANVTSDLNRKNVTCWAENDVGRAEVSV 243

Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY 232
            V        QL  A       +    +  PA    W       ++    +  +  +   
Sbjct: 244 QVNVSFPASVQLHTAVEMHHWCIPFSVDGQPAPSLRWL--FNGSVLNETSFIFTEFLEPA 301

Query: 233 SCHM----TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
           +        L++        G+Y  +A N  G+    I     
Sbjct: 302 ANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASASIMAAFM 344

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7 Length = 347

 Score = 49.7 bits (118), Expect = 4e-07
 Identities = 20/130 (15%), Positives = 37/130 (28%), Gaps = 10/130 (7%)

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
           P L +        V   V L C  E        W     ++  +    +   L +     
Sbjct: 159 PTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWI--LTELEQSATVMKSGGLPSL---- 212

Query: 236 MTLKIRSILSHQ-FGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI 294
             L + ++ S     +  C A N +G  +  ++V V+              +H       
Sbjct: 213 -GLTLANVTSDLNRKNVTCWAENDVGRAEVSVQVNVSFPASVQLH--TAVEMHHWCIPFS 269

Query: 295 ASNGVVPSVS 304
                 PS+ 
Sbjct: 270 VDGQPAPSLR 279

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 60.7 bits (147), Expect = 7e-12
 Identities = 25/161 (15%), Positives = 39/161 (24%), Gaps = 54/161 (33%)

Query: 112 TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYN 170
           +   G L V  PP I    ++       G +  ++C     P P  +AW       +   
Sbjct: 3   SGSSGTLTVNGPPII---SSTQTQHALHGEKGQIKCFIRSTPPPDRIAWSW-KENVLESG 58

Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
                                                           T   Y    +  
Sbjct: 59  ------------------------------------------------TSGRYTVETIST 70

Query: 231 GYSCHMTLKIRSILSHQFG-SYRCVAVNALGETDGFIKVYV 270
                 TL I +I+   F   Y C A N+ G     I++  
Sbjct: 71  EEGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 111

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens} Length = 339

 Score = 62.8 bits (152), Expect = 2e-11
 Identities = 30/271 (11%), Positives = 59/271 (21%), Gaps = 74/271 (27%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACV-----VENLREYKVAWVKMITQTILSIHHKVV 71
            +               T+    ++ C        +  + K+ W K            + 
Sbjct: 116 FENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK--------DSLLLD 167

Query: 72  TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV-------- 122
             N++            L + DV   D G+Y C                + +        
Sbjct: 168 KDNEKFLSVRGTTH---LLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEE 224

Query: 123 -PPRILLDRTSTDVVVREGTEVTLECSA---VGYPEPYVAWRREDGKAINYNGELVPPML 178
             P I+       +    G+ +T+ C      G P   + W   +   I           
Sbjct: 225 TIPVII--SPLKTISASLGSRLTIPCKVFLGTGTPLTTMLWWTANDTHIE---------- 272

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                                           +      +T    ++    N     + L
Sbjct: 273 --------------------------------SAYPGGRVTEGPRQEYSENNENYIEVPL 300

Query: 239 KIRSI-LSHQFGSYRCVAVNALGETDGFIKV 268
               +        ++CV  N L        V
Sbjct: 301 IFDPVTREDLHMDFKCVVHNTLSFQTLRTTV 331

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 61.3 bits (148), Expect = 2e-11
 Identities = 28/253 (11%), Positives = 64/253 (25%), Gaps = 59/253 (23%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
                  V  +T    K  ++ C+              +  ++ + + +         I+
Sbjct: 9   SVSDQHGVVYITENKNKTVVIPCLGSISN---------LNVSLCARYPEKRFVPDGNRIS 59

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV---PPRILLDRTSTDVVV 137
           ++  + + +       +  G   C+      + Q     VVV       ++   S  + +
Sbjct: 60  WDSKKGFTIP--SYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIEL 117

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
             G ++ L C+A       + +                                      
Sbjct: 118 SVGEKLVLNCTARTELNVGIDF-------------------------------------- 139

Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
                  +  Y +++     +   D +            TL I  +     G Y C A +
Sbjct: 140 -------NWEYPSSKHQHKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASS 192

Query: 258 ALGETDGFIKVYV 270
            L        V V
Sbjct: 193 GLMTKKNSTFVRV 205

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R* Length = 213

 Score = 44.0 bits (103), Expect = 2e-05
 Identities = 16/119 (13%), Positives = 34/119 (28%), Gaps = 1/119 (0%)

Query: 9   CTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHH 68
             Y               P   +  +VG++ ++ C         + +      +      
Sbjct: 93  IMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKK 152

Query: 69  KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
            V    K  S +        L +  V  +D+G Y C   + +       +++V   P  
Sbjct: 153 LVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEDPIE 211

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 59.0 bits (143), Expect = 3e-11
 Identities = 23/120 (19%), Positives = 37/120 (30%), Gaps = 13/120 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P   +   N T  V    +++CV        + W K            V TQ+ R+    
Sbjct: 9   PVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKD--------GVLVSTQDSRIKQLE 60

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG 140
           N      L +R  +  D G Y C         +   Y++V      +     TD  +   
Sbjct: 61  NGV----LQIRYAKLGDTGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS 116

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.3 bits (136), Expect = 2e-10
 Identities = 30/151 (19%), Positives = 40/151 (26%), Gaps = 65/151 (43%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           PP I   +   +  V       L C A G P P + WR+        +G LV        
Sbjct: 8   PPVIR--QGPVNQTVAVDGTFVLSCVATGSPVPTILWRK--------DGVLVST------ 51

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLK 239
                                                    +DSR+    NG      L+
Sbjct: 52  -----------------------------------------QDSRIKQLENG-----VLQ 65

Query: 240 IRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           IR       G Y C+A    GE      + V
Sbjct: 66  IRYAKLGDTGRYTCIASTPSGEATWSAYIEV 96

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 58.3 bits (141), Expect = 5e-11
 Identities = 28/144 (19%), Positives = 43/144 (29%), Gaps = 50/144 (34%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
            Q   PPRI+     +D++V +G   TL C A G P P + W +  G+ +  + +     
Sbjct: 4   RQEDFPPRIV--EHPSDLIVSKGEPATLNCKAEGRPTPTIEWYK-GGERVETDKDDPRSH 60

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
             +     G+     +     +                         D            
Sbjct: 61  RMLLP--SGSLFFLRIVHGRKSR-----------------------PDE----------- 84

Query: 238 LKIRSILSHQFGSYRCVAVNALGE 261
                      G Y CVA N LGE
Sbjct: 85  -----------GVYVCVARNYLGE 97

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 40.9 bits (96), Expect = 5e-05
 Identities = 20/111 (18%), Positives = 36/111 (32%), Gaps = 13/111 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
           PR  E  +++  + G+ A + C  E      + W K    + T       H+++  +  +
Sbjct: 10  PRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSL 69

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTV-PMTSQKGYLQVVVPPRI 126
                 H             D G Y+C   N +    S    L+V      
Sbjct: 70  FFLRIVHGR-------KSRPDEGVYVCVARNYLGEAVSHDASLEVAAAAHH 113

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens} Length = 117

 Score = 37.9 bits (88), Expect = 8e-04
 Identities = 15/45 (33%), Positives = 23/45 (51%), Gaps = 4/45 (8%)

Query: 272 LVDGDIFQIR----KMSRLHMGAYLCIASNGVVPSVSHRIMVTVH 312
           L  G +F +R    + SR   G Y+C+A N +  +VSH   + V 
Sbjct: 64  LPSGSLFFLRIVHGRKSRPDEGVYVCVARNYLGEAVSHDASLEVA 108

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 60.2 bits (145), Expect = 6e-11
 Identities = 24/193 (12%), Positives = 52/193 (26%), Gaps = 49/193 (25%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE----- 172
            ++   P        +  + + G  V+L CS  G   P+ +WR +    +N         
Sbjct: 1   FKIETTPE-------SRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPLNGKVTNEGTT 53

Query: 173 -----------------------------------LVPPMLTIPNQLEGAFVSQTVELHC 197
                                                 P     +        + + + C
Sbjct: 54  STLTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPEIHLSGPLEAGKPITVKC 113

Query: 198 H-TEAFPASLNYWTNEKGDMIITGDDY-EDSRLINGYSCHMTLKIRSILSHQFGSYRCVA 255
              + +P         KGD ++   ++ ED+   +  +  + +    ++        C A
Sbjct: 114 SVADVYPFDRLEIDLLKGDHLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRA 173

Query: 256 VNALGETDGFIKV 268
              + E D    V
Sbjct: 174 KLHIDEMDSVPTV 186

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A Length = 202

 Score = 55.5 bits (133), Expect = 2e-09
 Identities = 20/142 (14%), Positives = 42/142 (29%), Gaps = 19/142 (13%)

Query: 26  EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
            P +   A +G    + C          +W     Q    ++ KV  +    +       
Sbjct: 6   TPESRYLAQIGDSVSLTCSTTGCESPFFSWRT---QIDSPLNGKVTNEGTTST------- 55

Query: 86  SWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVT 144
              L +  V   +   Y+C          +   +++   P+           +  G  +T
Sbjct: 56  ---LTMNPVSFGNEHSYLCTATCESRKLEKGIQVEIYSFPKDPE--IHLSGPLEAGKPIT 110

Query: 145 LECSAVG-YPEPY--VAWRRED 163
           ++CS    YP     +   + D
Sbjct: 111 VKCSVADVYPFDRLEIDLLKGD 132

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 59.8 bits (145), Expect = 7e-11
 Identities = 23/164 (14%), Positives = 46/164 (28%), Gaps = 56/164 (34%)

Query: 107 NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKA 166
                ++       +  P++   +    V   EG +V + C    YP   ++W R     
Sbjct: 3   YAAASSALVPRGSHMYAPKL---QGPVAVYTWEGNQVNITCEVFAYPSATISWFR----- 54

Query: 167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS 226
              +G+L+P                                   +   ++ I        
Sbjct: 55  ---DGQLLPS----------------------------------SNYSNIKIYNTPS--- 74

Query: 227 RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
                      L++     + FG+Y C AVN +G+      +  
Sbjct: 75  --------ASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQ 110

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens} Length = 215

 Score = 43.7 bits (103), Expect = 2e-05
 Identities = 22/123 (17%), Positives = 43/123 (34%), Gaps = 16/123 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT- 80
           P+   PV  V    G +  + C V       ++W +           +++  +   +I  
Sbjct: 20  PKLQGPV-AVYTWEGNQVNITCEVFAYPSATISWFR---------DGQLLPSSNYSNIKI 69

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP----RILLDRTSTDV 135
           +N   + +L +    E D G Y C   N +   S +  L     P       ++  S+  
Sbjct: 70  YNTPSASYLEVTPDSENDFGNYNCTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTA 129

Query: 136 VVR 138
            V+
Sbjct: 130 QVQ 132

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 57.0 bits (138), Expect = 9e-11
 Identities = 23/153 (15%), Positives = 41/153 (26%), Gaps = 57/153 (37%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
            +  +  RIL       + V EG      C   G P P V W R         G+++   
Sbjct: 9   SKTTLAARIL--TKPRSMTVYEGESARFSCDTDGEPVPTVTWLR--------KGQVLST- 57

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                            + +  +  T                 T
Sbjct: 58  ---------------------------------SARHQVTTTKYKS-------------T 71

Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +I S+ +   G+Y  V  N+ G+ +    + +
Sbjct: 72  FEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A Length = 106

 Score = 41.2 bits (97), Expect = 4e-05
 Identities = 18/100 (18%), Positives = 38/100 (38%), Gaps = 11/100 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
            R      ++T   G+ A  +C  +      V W++           +V++ + R  +T 
Sbjct: 15  ARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLR---------KGQVLSTSARHQVTT 65

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
             ++S    +  VQ +D G Y   + N+      +  L +
Sbjct: 66  TKYKS-TFEISSVQASDEGNYSVVVENSEGKQEAEFTLTI 104

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens} Length = 118

 Score = 57.1 bits (138), Expect = 1e-10
 Identities = 19/111 (17%), Positives = 42/111 (37%), Gaps = 15/111 (13%)

Query: 29  ANVTATVGKEALMACVVENLRE-----YKVAWVKMITQTILSIHHK----VVTQNKRVSI 79
             V   +G    + C ++          ++ W +      +++ H+      +++KR+  
Sbjct: 8   TQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEF 67

Query: 80  TF----NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGY--LQVVVPP 124
                  + R+  L +  ++  D G Y C   T P  S+     L+V+  P
Sbjct: 68  VAARLGAELRNASLRMFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKP 118

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 56.6 bits (137), Expect = 1e-10
 Identities = 19/149 (12%), Positives = 36/149 (24%), Gaps = 57/149 (38%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
           + P+IL       + ++ G    LE   +G P+P   W                      
Sbjct: 1   LKPKILTASR--KIKIKAGFTHNLEVDFIGAPDPTATWTV-GDSGA-------------- 43

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                            ++++                  ++   
Sbjct: 44  -----------------------------ALAPELLVDAKSS-----------TTSIFFP 63

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
           S      G+Y+    N LGE +   +V V
Sbjct: 64  SAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A Length = 93

 Score = 41.9 bits (99), Expect = 1e-05
 Identities = 6/83 (7%), Positives = 15/83 (18%), Gaps = 10/83 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+       +    G    +        +    W                     + +  
Sbjct: 3   PKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTV---------GDSGAALAPELLVDA 53

Query: 82  NDHRSWFLHLRDVQETDRGWYMC 104
               +  +     +  D G Y  
Sbjct: 54  KSSTT-SIFFPSAKRADSGNYKL 75

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4 Length = 98

 Score = 56.4 bits (136), Expect = 2e-10
 Identities = 16/66 (24%), Positives = 23/66 (34%), Gaps = 1/66 (1%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPP 176
           L     P ++         VR G +VT  C+A    P   + W R     +         
Sbjct: 3   LAAPSKPIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNG 62

Query: 177 MLTIPN 182
           +LTI N
Sbjct: 63  ILTIRN 68

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 56.6 bits (137), Expect = 2e-10
 Identities = 19/152 (12%), Positives = 36/152 (23%), Gaps = 57/152 (37%)

Query: 120 VVVPPRILLDRTSTD-VVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
           +  PP+I L R      + + G ++ L     G P P V W +  G  +           
Sbjct: 18  IAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTK-GGAPL----------- 65

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                                            +   + +   D++              
Sbjct: 66  ---------------------------------DTSRVHVRTSDFDTV-----------F 81

Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +R       G Y         +    I++ V
Sbjct: 82  FVRQAARSDSGEYELSVQIENMKDTATIRIRV 113

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A Length = 117

 Score = 56.5 bits (136), Expect = 2e-10
 Identities = 18/103 (17%), Positives = 35/103 (33%), Gaps = 4/103 (3%)

Query: 26  EPVANVTATVGKEALMACVVE--NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           E   N++A  G   ++ C +     +  +V W +      +         +         
Sbjct: 8   ETTGNISAEKGGSIILQCHLSSTTAQVTQVNWEQQDQLLAICNADLGWHISPSFKDRVAP 67

Query: 84  HRSWFLHLRDVQETDRGWYMCQINTVPMTSQKG--YLQVVVPP 124
                L L+ +   D G Y C  +T P  +  G  +L+V+   
Sbjct: 68  GPGLGLTLQSLTVNDTGEYFCIYHTYPDGTYTGRIFLEVLESS 110

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 56.2 bits (136), Expect = 2e-10
 Identities = 22/148 (14%), Positives = 32/148 (21%), Gaps = 57/148 (38%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P+I+  +   D  VR G  V L     G       W +   K I               
Sbjct: 7   GPQII--QFPEDQKVRAGESVELFGKVTGTQPITCTWMK-FRKQI--------------- 48

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
                                        E   M +   +               L I +
Sbjct: 49  ----------------------------QESEHMKVENSEN-----------GSKLTILA 69

Query: 243 ILSHQFGSYRCVAVNALGETDGFIKVYV 270
                 G Y  +  N LG     + + V
Sbjct: 70  ARQEHCGCYTLLVENKLGSRQAQVNLTV 97

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 114

 Score = 48.1 bits (115), Expect = 2e-07
 Identities = 15/105 (14%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+  +   +     G+   +   V   +     W+K           K + +++ + +  
Sbjct: 8   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF---------RKQIQESEHMKVEN 58

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPR 125
           +++ S  L +   ++   G Y   + N +     +  L VV  P 
Sbjct: 59  SENGS-KLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKPD 102

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 55.8 bits (135), Expect = 3e-10
 Identities = 21/154 (13%), Positives = 36/154 (23%), Gaps = 59/154 (38%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
           +   V P I       +     G  + + C+A G P P + W ++               
Sbjct: 5   VLERVAPTIT--GNLENQTTSIGESIEVSCTASGNPPPQIMWFKD--------------- 47

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                                + ++         L +G      
Sbjct: 48  ------------------------------------NETLVEDSGI---VLKDGNR---N 65

Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
           L IR +     G Y C A + LG         + 
Sbjct: 66  LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIE 99

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} Length = 108

 Score = 51.6 bits (124), Expect = 9e-09
 Identities = 15/106 (14%), Positives = 39/106 (36%), Gaps = 13/106 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P     + N T ++G+   ++C        ++ W K          ++ + ++  + +  
Sbjct: 11  PTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFK---------DNETLVEDSGIVLKD 61

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
            +     L +R V++ D G Y CQ  + +     + +  +      
Sbjct: 62  GNRN---LTIRRVRKEDEGLYTCQACSVLGCAKVEAFFIIEGAQEK 104

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 56.8 bits (137), Expect = 5e-10
 Identities = 20/95 (21%), Positives = 31/95 (32%), Gaps = 8/95 (8%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
             +      D G Y CQ N     S    L+V +   +L    +   V +E   + L C 
Sbjct: 56  YFIDAATVNDSGEYRCQTNL-STLSDPVQLEVHIGWLLL---QAPRWVFKEEDPIHLRCH 111

Query: 149 A-VGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           +        V + + +GK   Y          IP 
Sbjct: 112 SWKNTALHKVTYLQ-NGKDRKYFHH--NSDFHIPK 143

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C* Length = 175

 Score = 48.3 bits (115), Expect = 4e-07
 Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 53/179 (29%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELV--- 174
           +    P+ ++        V E   VTL+C     PE     W   +    +         
Sbjct: 1   RTEDLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQASSYFIDA 60

Query: 175 -----------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFP 203
                                          +L  P     E       + L CH+    
Sbjct: 61  ATVNDSGEYRCQTNLSTLSDPVQLEVHIGWLLLQAPRWVFKEE----DPIHLRCHSWKNT 116

Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
           A     +              ++ +    +  +    I        GSY C  +     
Sbjct: 117 ALHKVTY-------------LQNGKDRKYFHHNSDFHIPKATLKDSGSYFCRGLVGSKN 162

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 99

 Score = 55.0 bits (133), Expect = 5e-10
 Identities = 28/154 (18%), Positives = 39/154 (25%), Gaps = 60/154 (38%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
             + V P         D  V EG +  L+CS  G P P + W          NG+ +   
Sbjct: 6   SGMEVAPSFS--SVLKDCAVIEGQDFVLQCSVRGTPVPRITWLL--------NGQPIQY- 54

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                                                       
Sbjct: 55  ------------------------------------ARSTCEAGVA-------------E 65

Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
           L I+  L    G+Y C+A NALG+      V V+
Sbjct: 66  LHIQDALPEDHGTYTCLAENALGQVSCSAWVTVH 99

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 56.4 bits (136), Expect = 6e-10
 Identities = 20/95 (21%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
            +       D G Y CQ       S   +L V+    +L    +  +  +EG  + L C 
Sbjct: 53  SYRFKANNNDSGEYTCQTGQ-TSLSDPVHLTVLFEWLVL---QTPHLEFQEGETIMLRCH 108

Query: 149 AV-GYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           +    P   V + + +GK+  ++     P  +IP 
Sbjct: 109 SWKDKPLVKVTFFQ-NGKSQKFSHL--DPTFSIPQ 140

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 53.7 bits (129), Expect = 6e-09
 Identities = 24/175 (13%), Positives = 41/175 (23%), Gaps = 53/175 (30%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELV------- 174
           PP+ +L      + V +   VTL C     PE   + W         +            
Sbjct: 2   PPKAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNGNLIPTHTQPSYRFKANNN 61

Query: 175 -------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASLN 207
                                      +L  P+    EG    +T+ L CH+      + 
Sbjct: 62  DSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEG----ETIMLRCHSWKDKPLVK 117

Query: 208 Y-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
             +             +++ +         T  I        G Y C        
Sbjct: 118 VTF-------------FQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTL 159

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A Length = 170

 Score = 42.1 bits (99), Expect = 6e-05
 Identities = 26/183 (14%), Positives = 43/183 (23%), Gaps = 66/183 (36%)

Query: 173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLING 231
           L PP + +   L+      +V L C     P S +  W             + +  LI  
Sbjct: 9   LEPPWINV---LQE----DSVTLTCQGARSPESDSIQW-------------FHNGNLIPT 48

Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-------------------- 271
           ++           ++  G Y C            + V                       
Sbjct: 49  HTQP--SYRFKANNNDSGEYTCQTGQTSLSDPVHLTVLFEWLVLQTPHLEFQEGETIMLR 106

Query: 272 -----------------------LVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIM 308
                                        F I + +  H G Y C  + G     S  + 
Sbjct: 107 CHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSGDYHCTGNIGYTLFSSKPVT 166

Query: 309 VTV 311
           +TV
Sbjct: 167 ITV 169

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A Length = 110

 Score = 54.8 bits (132), Expect = 6e-10
 Identities = 23/104 (22%), Positives = 38/104 (36%), Gaps = 9/104 (8%)

Query: 28  VANVTATVGKEALMACVVEN-----LREYKVAWVKMITQTILSIHH---KVVTQNKRVSI 79
           +  + A   + A + C   N     L E  V W       +  ++    K  + + +   
Sbjct: 1   MLKIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMG 60

Query: 80  -TFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            T  D  SW L L ++Q  D+G Y C I+    T      Q+  
Sbjct: 61  RTSFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNS 104

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 54.7 bits (132), Expect = 7e-10
 Identities = 17/113 (15%), Positives = 27/113 (23%), Gaps = 12/113 (10%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           +       E + +V    G  A   C +       V W               +  N+  
Sbjct: 10  QGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL---------DKTPLHANELN 60

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDR 130
            I         L LR +   D G    +            L+V   P +    
Sbjct: 61  EIDAQPGGYHVLTLRQLALKDSGTIYFEAGDQ---RASAALRVTEKPSVFSRS 110

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 115

 Score = 43.5 bits (103), Expect = 7e-06
 Identities = 12/48 (25%), Positives = 18/48 (37%), Gaps = 1/48 (2%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           +V   R+ +     DV V+EG+  T  C         V W   D   +
Sbjct: 8   LVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFL-DKTPL 54

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 56.9 bits (137), Expect = 7e-10
 Identities = 33/253 (13%), Positives = 65/253 (25%), Gaps = 52/253 (20%)

Query: 21  MPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSI 79
           +  F +    V      +       E L    KV ++          + K + +  +  +
Sbjct: 2   IDPFTKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIF---------NEKEIFEGPKYKM 52

Query: 80  TFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
             + +     + +  +Q+ D G Y  Q+        K                       
Sbjct: 53  HIDRNTGIIEMFMEKLQDEDEGTYTFQL-----QDGKA---------------------- 85

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
                T   + V   + +   ++E             P        E       V L C 
Sbjct: 86  -----TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWE-VTGECNVLLKCK 139

Query: 199 TEAFPASLN-YWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
                   +  W   K +  I+ D+       +G     TL I        G Y  +  +
Sbjct: 140 VANIKKETHIVWY--KDEREISVDEK--HDFKDGIC---TLLITEFSKKDAGIYEVILKD 192

Query: 258 ALGETDGFIKVYV 270
             G+    +K+  
Sbjct: 193 DRGKDKSRLKLVD 205

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens} Length = 207

 Score = 40.7 bits (95), Expect = 2e-04
 Identities = 15/91 (16%), Positives = 32/91 (35%), Gaps = 14/91 (15%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNK 75
            +   P F E + +   T     L+ C V N++ E  + W K           + ++ ++
Sbjct: 113 IRKQGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYK---------DEREISVDE 162

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQI 106
           +            L + +  + D G Y   +
Sbjct: 163 KHDFKDGICT---LLITEFSKKDAGIYEVIL 190

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 54.7 bits (132), Expect = 9e-10
 Identities = 23/153 (15%), Positives = 37/153 (24%), Gaps = 55/153 (35%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
            +    P  +         V EG  V LEC     P P + W+                 
Sbjct: 10  HEHKRAPMFI--YKPQSKKVLEGDSVKLECQISAIPPPKLFWK----------------- 50

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                              + + ++  +    S   +      T
Sbjct: 51  -----------------------------------RNNEMVQFNTDRISLYQDNTGRV-T 74

Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           L I+ +     G Y   AVN  G T    ++ V
Sbjct: 75  LLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDV 107

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 116

 Score = 54.3 bits (131), Expect = 1e-09
 Identities = 21/106 (19%), Positives = 38/106 (35%), Gaps = 9/106 (8%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F     +     G    + C +  +   K+ W +         +  V     R+S+  
Sbjct: 16  PMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRN--------NEMVQFNTDRISLYQ 67

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
           ++     L ++DV + D GWY    +N   +T+    L V   P  
Sbjct: 68  DNTGRVTLLIKDVNKKDAGWYTVSAVNEAGVTTCNTRLDVTARPNQ 113

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3 Length = 176

 Score = 56.1 bits (135), Expect = 9e-10
 Identities = 19/148 (12%), Positives = 46/148 (31%), Gaps = 14/148 (9%)

Query: 31  VTATVGKEALMACVVENLRE--YKVAWVKMITQ-TILSIHHKVVTQNKRVSITFNDHRSW 87
           V   +G    +      + +   +V W +  T         K   ++    I  N     
Sbjct: 6   VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILAN----G 61

Query: 88  FLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLE 146
            L ++++   D G Y   + +T         L + +   +     S  ++  E +  TL 
Sbjct: 62  DLKIKNLTRDDSGTYNVTVYSTNGTRILNKALDLRILEMV-----SKPMIYWECSNATLT 116

Query: 147 CSAVGYPEPYVAWRREDGKAINYNGELV 174
           C  +   +  +   +   + +    +  
Sbjct: 117 CEVLEGTDVELKLYQ-GKEHLRSLRQKT 143

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 56.4 bits (136), Expect = 1e-09
 Identities = 18/94 (19%), Positives = 30/94 (31%), Gaps = 6/94 (6%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
             +      D G Y CQ     + S    L+V +   +L    +   V +E   + L C 
Sbjct: 56  YFIDAATVDDSGEYRCQTQLSTL-SDPVQLEVHIGWLLL---QAPRWVFKEEDPIHLRCH 111

Query: 149 AVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           +      +     ++GK   Y          IP 
Sbjct: 112 SWKNTALHKVTYLQNGKGRKYFHH--NSDFYIPK 143

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 47.6 bits (113), Expect = 1e-06
 Identities = 22/179 (12%), Positives = 39/179 (21%), Gaps = 53/179 (29%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI-NYNGELV--- 174
           +    P+ ++        V E   VTL+C     PE        +   I +         
Sbjct: 1   RTEDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNESLISSQASSYFIDA 60

Query: 175 -----------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFP 203
                                          +L  P     E       + L CH+    
Sbjct: 61  ATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEE----DPIHLRCHSWKNT 116

Query: 204 ASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
           A     +              ++ +    +  +    I        GSY C  +     
Sbjct: 117 ALHKVTY-------------LQNGKGRKYFHHNSDFYIPKATLKDSGSYFCRGLVGSKN 162

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C* Length = 204

 Score = 41.4 bits (97), Expect = 1e-04
 Identities = 24/186 (12%), Positives = 46/186 (24%), Gaps = 61/186 (32%)

Query: 171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN 230
            +L   ++ +  Q        +V L C     P   +               + +  LI+
Sbjct: 3   EDLPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQW------------FHNESLIS 50

Query: 231 GYSCHMTLKIRSILSHQFGSYRCVAVNAL-------------------------GET--- 262
             +   +  I +      G YRC    +                           +    
Sbjct: 51  SQAS--SYFIDAATVDDSGEYRCQTQLSTLSDPVQLEVHIGWLLLQAPRWVFKEEDPIHL 108

Query: 263 -----------------DGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSH 305
                            +G  + Y +      F I K +    G+Y C    G     S 
Sbjct: 109 RCHSWKNTALHKVTYLQNGKGRKYFH--HNSDFYIPKATLKDSGSYFCRGLVGSKNVSSE 166

Query: 306 RIMVTV 311
            + +T+
Sbjct: 167 TVQITI 172

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens} Length = 477

 Score = 57.8 bits (140), Expect = 1e-09
 Identities = 35/194 (18%), Positives = 49/194 (25%), Gaps = 66/194 (34%)

Query: 87  WFLHLRDVQETDRGWYMCQ---------INTVPMTSQKGYLQVVVPPRILLDRTSTDVVV 137
           W    R     +R    C              P      Y         + DR +  V V
Sbjct: 340 WVFRRRWRLNFNRQQPTCATPEFVQGKEFKDFPDVLLPNYFTCRRAR--IRDRKAQQVFV 397

Query: 138 REGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHC 197
            EG  V   C A G P P + W             LV                 + + + 
Sbjct: 398 DEGHTVQFVCRADGDPPPAILWLSP-------RKHLV-----------------SAKSNG 433

Query: 198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN 257
               FP                          +G     TL++R       G+Y C+A N
Sbjct: 434 RLTVFP--------------------------DG-----TLEVRYAQVQDNGTYLCIAAN 462

Query: 258 ALGETDGFIKVYVN 271
           A G       ++V 
Sbjct: 463 AGGNDSMPAHLHVR 476

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 54.6 bits (131), Expect = 1e-09
 Identities = 21/145 (14%), Positives = 32/145 (22%), Gaps = 44/145 (30%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
           +       +  +         G  V L C AVG P P + W  E     +   +L     
Sbjct: 17  RGSHMAGFV--QAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGAR 74

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                +                       Y  +    + I     ED+            
Sbjct: 75  LDRVHIHA--------------------TYHQHAASTISIDTLVEEDT------------ 102

Query: 239 KIRSILSHQFGSYRCVAVNALGETD 263
                     G+Y C A N      
Sbjct: 103 ----------GTYECRASNDPDRNH 117

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A Length = 137

 Score = 43.1 bits (101), Expect = 1e-05
 Identities = 19/126 (15%), Positives = 38/126 (30%), Gaps = 8/126 (6%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQ 73
               M  F +   +    VG    + C        ++ W             +       
Sbjct: 17  RGSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLD 76

Query: 74  NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTST 133
              +  T++ H +  + +  + E D G Y C+      ++      +   PR+   R   
Sbjct: 77  RVHIHATYHQHAASTISIDTLVEEDTGTYECRA-----SNDPDRNHLTRAPRVKWVRAQA 131

Query: 134 DVVVRE 139
            V+V E
Sbjct: 132 VVLVLE 137

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 24/176 (13%), Positives = 44/176 (25%), Gaps = 53/176 (30%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYNGELV------ 174
           VP +  +        + +G  VTL C+   + E     W      +   N  L       
Sbjct: 1   VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSLSEETNSSLNIVNAKF 60

Query: 175 --------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASL 206
                                       +L    +  +EG    Q + L CH        
Sbjct: 61  EDSGEYKCQHQQVNESEPVYLEVFSDWLLLQASAEVVMEG----QPLFLRCHGWRNWDVY 116

Query: 207 NY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE 261
              +             Y+D   +  +  +  + I +      G+Y C       +
Sbjct: 117 KVIY-------------YKDGEALKYWYENHNISITNATVEDSGTYYCTGKVWQLD 159

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A* Length = 176

 Score = 55.3 bits (133), Expect = 2e-09
 Identities = 26/95 (27%), Positives = 43/95 (45%), Gaps = 8/95 (8%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS 148
           L++ + +  D G Y CQ   V   S+  YL+V     +L    ++  VV EG  + L C 
Sbjct: 53  LNIVNAKFEDSGEYKCQHQQVN-ESEPVYLEVFSDWLLL---QASAEVVMEGQPLFLRCH 108

Query: 149 A-VGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
               +    V + + DG+A+ Y  E     ++I N
Sbjct: 109 GWRNWDVYKVIYYK-DGEALKYWYE--NHNISITN 140

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X Length = 103

 Score = 53.2 bits (128), Expect = 2e-09
 Identities = 19/151 (12%), Positives = 38/151 (25%), Gaps = 55/151 (36%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
           V   P I    T  +          +  +  G P+P + W          NG ++     
Sbjct: 1   VHFAPTI----TFLESPT-SDHHWCIPFTVKGNPKPALQWFY--------NGAILNE--- 44

Query: 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK 239
                                          ++     I   ++ +         H  L+
Sbjct: 45  -------------------------------SKYICTKIHVTNHTEY--------HGCLQ 65

Query: 240 IRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           + +      G Y  +A N  G+ +  I  + 
Sbjct: 66  LDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 52.8 bits (127), Expect = 3e-09
 Identities = 24/140 (17%), Positives = 38/140 (27%), Gaps = 59/140 (42%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           PP IL  +   +  +       L+C A G P P ++W + +G                  
Sbjct: 8   PPIIL--QGPANQTLAVDGTALLKCKATGDPLPVISWLK-EGFTFPGRDP---------- 54

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
                                        E+G + I      D+                
Sbjct: 55  ------------------------RATIQEQGTLQIKNLRISDT---------------- 74

Query: 243 ILSHQFGSYRCVAVNALGET 262
                 G+Y CVA ++ GET
Sbjct: 75  ------GTYTCVATSSSGET 88

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 100

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 13/100 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P   +  AN T  V   AL+ C         ++W+K               ++ R +I  
Sbjct: 9   PIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKE--------GFTFPGRDPRATIQE 60

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
                  L +++++ +D G Y C   ++   TS    L V
Sbjct: 61  QG----TLQIKNLRISDTGTYTCVATSSSGETSWSAVLDV 96

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A* Length = 248

 Score = 55.1 bits (132), Expect = 4e-09
 Identities = 28/165 (16%), Positives = 51/165 (30%), Gaps = 20/165 (12%)

Query: 31  VTATVGKEALMACVV-----ENLREYKVAWVK---MITQTILSIHHKVVTQNKRVSITFN 82
               +     + C +      N+    + W        + +         Q         
Sbjct: 13  QITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIV 72

Query: 83  DHRSWF-----LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRILLDRTSTDVV 136
                      L L  +Q  + G Y C++   P+ +Q    L+VV  P   L     D V
Sbjct: 73  SPWRLKSGDASLRLPGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRL---LLDQV 129

Query: 137 VREGTEVTLECSAVG-YPEP-YVAWRREDGKAINYNGELVPPMLT 179
             +  E    C + G YPE   + W +   +   +  E+   ++T
Sbjct: 130 GMKENEDKYMCESSGFYPEAINITWEK-QTQKFPHPIEISEDVIT 173

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 53.3 bits (128), Expect = 5e-09
 Identities = 30/173 (17%), Positives = 49/173 (28%), Gaps = 63/173 (36%)

Query: 97  TDRGWYMCQ-INTVPMTSQKGYLQVV------VPPRILLDRTSTDVVVREGTEVTLECSA 149
              G      IN   + ++  +L+ V      V P     +T  D+ V EG+    +C  
Sbjct: 8   KASGSSPTSPINANKVENEDAFLEEVAEEKPHVKPYFT--KTILDMEVVEGSAARFDCKV 65

Query: 150 VGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW 209
            GYP+P V W ++                                               
Sbjct: 66  EGYPDPEVMWFKD----------------------------------------------- 78

Query: 210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET 262
                + +     ++      G     +L I  +       Y C AVN+LGE 
Sbjct: 79  ----DNPVKESRHFQIDYDEEGNC---SLTISEVCGDDDAKYTCKAVNSLGEA 124

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A Length = 154

 Score = 52.9 bits (127), Expect = 8e-09
 Identities = 20/106 (18%), Positives = 41/106 (38%), Gaps = 10/106 (9%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F + + ++    G  A   C VE   + +V W K             V +++   I +
Sbjct: 42  PYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFK---------DDNPVKESRHFQIDY 92

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPRI 126
           ++  +  L + +V   D   Y C+ +N++   +    L V    + 
Sbjct: 93  DEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLVETMGKE 138

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 24/142 (16%), Positives = 41/142 (28%), Gaps = 56/142 (39%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
           + PPR +  +   ++ + EG    ++    G P P V+W          NG  V      
Sbjct: 3   MGPPRFI--QVPENMSIDEGRFCRMDFKVSGLPAPDVSWYL--------NGRTVQS---- 48

Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
                                         ++   MI++                 +L  
Sbjct: 49  ------------------------------DDLHKMIVSEKG------------LHSLIF 66

Query: 241 RSILSHQFGSYRCVAVNALGET 262
             + +   G+Y CVA N  GE 
Sbjct: 67  EVVRASDAGAYACVAKNRAGEA 88

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens} Length = 100

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 20/102 (19%), Positives = 34/102 (33%), Gaps = 10/102 (9%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRF +   N++   G+   M   V  L    V+W             + V  +    +  
Sbjct: 6   PRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLN---------GRTVQSDDLHKMIV 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVV 122
           ++     L    V+ +D G Y C   N     +    L V+ 
Sbjct: 57  SEKGLHSLIFEVVRASDAGAYACVAKNRAGEATFTVQLDVLA 98

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 51.6 bits (124), Expect = 6e-09
 Identities = 16/69 (23%), Positives = 26/69 (37%), Gaps = 20/69 (28%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP-- 175
           LQ+ V P        T   +  G+ + L+C AVG P P+  W +        N   +   
Sbjct: 4   LQICVEP--------TSQKLMPGSTLVLQCVAVGSPIPHYQWFK--------NELPLTHE 47

Query: 176 --PMLTIPN 182
              +  +P 
Sbjct: 48  TKKLYMVPY 56

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens} Length = 91

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 13/90 (14%), Positives = 25/90 (27%), Gaps = 16/90 (17%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYS 233
              + +    +      T+ L C     P   +Y W   K ++ +T +            
Sbjct: 3   KLQICVEPTSQKLMPGSTLVLQCVAVGSPI-PHYQWF--KNELPLTHET----------- 48

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETD 263
                 +  +     G+Y C   N     D
Sbjct: 49  -KKLYMVPYVDLEHQGTYWCHVYNDRDSQD 77

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 51.1 bits (123), Expect = 9e-09
 Identities = 24/149 (16%), Positives = 38/149 (25%), Gaps = 56/149 (37%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
            PP      +  D  VREG +V +     G P+P V+W R + + +  +           
Sbjct: 4   APPTFK--VSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR-NRQPVRPDQ---------- 50

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                                  +                L+I 
Sbjct: 51  --------------------------------RRFAEEAEGGLCR-----------LRIL 67

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
           +      G Y C AVN  G      ++ V
Sbjct: 68  AAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens} Length = 99

 Score = 46.5 bits (111), Expect = 4e-07
 Identities = 17/100 (17%), Positives = 41/100 (41%), Gaps = 10/100 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F   + + +   G++ +M+  V+   +  V+W++         + + V  ++R     
Sbjct: 6   PTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLR---------NRQPVRPDQRRFAEE 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
            +     L +   +  D G+Y C+ +N       +  L+V
Sbjct: 57  AEGGLCRLRILAAERGDAGFYTCKAVNEYGARQCEARLEV 96

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4 Length = 118

 Score = 51.4 bits (123), Expect = 1e-08
 Identities = 22/153 (14%), Positives = 33/153 (21%), Gaps = 56/153 (36%)

Query: 118 LQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
           L V  PPR++              E  +E    G P P + W          NG+ +   
Sbjct: 3   LTVYYPPRVVSLEEPE-----LRLEHCIEFVVRGNPPPTLHWLH--------NGQPLRE- 48

Query: 178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT 237
                                                                G      
Sbjct: 49  ------------------------------------------SKIIHVEYYQEGEISEGC 66

Query: 238 LKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           L       +  G+Y  +A N LG  +  I  + 
Sbjct: 67  LLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF 99

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 96

 Score = 50.9 bits (122), Expect = 1e-08
 Identities = 14/63 (22%), Positives = 23/63 (36%), Gaps = 6/63 (9%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
            +   +++         V  G  VTL C     P P + W + DG  +        P+L 
Sbjct: 7   GLEEVQLV--VEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMK-DGVPLPLPPS---PVLI 60

Query: 180 IPN 182
           +P 
Sbjct: 61  LPE 63

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A Length = 214

 Score = 52.9 bits (126), Expect = 2e-08
 Identities = 27/160 (16%), Positives = 43/160 (26%), Gaps = 27/160 (16%)

Query: 29  ANVTATVGKEALMACVVE-------NLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
            +VT   G   L+ C          +     V W +     I      V T N       
Sbjct: 8   KSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFR--DGEIPYYAEVVATNNPDRRVKP 65

Query: 76  ----RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVP---MTSQKGYLQVVVPPRIL 127
               R  +  +  +    L + D +  D G Y  ++        + Q+  L + V   I 
Sbjct: 66  ETQGRFRLLGDVQKKNCSLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIE 125

Query: 128 LDRTSTDVVVREGTEVTLECS----AVGYPEPYVAWRRED 163
                    +  G    L CS        P    +W    
Sbjct: 126 KPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWTGNA 165

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 50.8 bits (122), Expect = 2e-08
 Identities = 25/149 (16%), Positives = 46/149 (30%), Gaps = 56/149 (37%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
             P  L  +   D+ V+EG    ++C   G P P ++W+         +G+ V P     
Sbjct: 8   FRPHFL--QAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL--------DGKPVRP----- 52

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                                        +    M++  +               +L I 
Sbjct: 53  -----------------------------DSAHKMLVRENG------------VHSLIIE 71

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
            + S   G Y C+A N  G+    +++ V
Sbjct: 72  PVTSRDAGIYTCIATNRAGQNSFSLELVV 100

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 49.3 bits (118), Expect = 6e-08
 Identities = 22/105 (20%), Positives = 32/105 (30%), Gaps = 10/105 (9%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F +   ++T   GK   M C V  L    ++W             K V  +    +  
Sbjct: 10  PHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQL---------DGKPVRPDSAHKMLV 60

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPR 125
            ++    L +  V   D G Y C   N     S    L V     
Sbjct: 61  RENGVHSLIIEPVTSRDAGIYTCIATNRAGQNSFSLELVVAAKES 105

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 50.4 bits (121), Expect = 2e-08
 Identities = 16/103 (15%), Positives = 33/103 (32%), Gaps = 13/103 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
            +   P+ + T  +GKE  + C +         W K         +   V ++ R+ +  
Sbjct: 8   LKILTPLTDQTVNLGKEICLKCEIS--ENIPGKWTK---------NGLPVQESDRLKVVQ 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
                  L + +    D G Y+         +    + V+  P
Sbjct: 57  KGRIH-KLVIANALTEDEGDYVF-APDAYNVTLPAKVHVISGP 97

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 100

 Score = 38.1 bits (89), Expect = 4e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 5/45 (11%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
             +IL     TD  V  G E+ L+C           W + +G  +
Sbjct: 7   GLKIL--TPLTDQTVNLGKEICLKCEISENIP--GKWTK-NGLPV 46

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 49.6 bits (119), Expect = 4e-08
 Identities = 15/52 (28%), Positives = 19/52 (36%), Gaps = 3/52 (5%)

Query: 120 VVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG 171
           +   P I+      D  V   +       A G P P   W + DGKAI   G
Sbjct: 3   ISSKPVIV--TGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK-DGKAITQGG 51

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens} Length = 99

 Score = 44.2 bits (105), Expect = 3e-06
 Identities = 18/100 (18%), Positives = 30/100 (30%), Gaps = 11/100 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P     + + T +    A  A            W K           K +TQ  +  ++ 
Sbjct: 7   PVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTK---------DGKAITQGGKYKLSE 57

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
           +     FL +     +D G Y C   N+    S    L +
Sbjct: 58  DKGGF-FLEIHKTDTSDSGLYTCTVKNSAGSVSSSCKLTI 96

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A Length = 108

 Score = 49.7 bits (119), Expect = 5e-08
 Identities = 21/103 (20%), Positives = 35/103 (33%), Gaps = 15/103 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
            RF + +    A+ G  A + C +   +   V W K           + +    R S+  
Sbjct: 9   ARFTQDLKTKEASEGATATLQCELS--KVAPVEWKK---------GPETLRDGGRYSLKQ 57

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
           +  R   L + D+   D G Y C       ++    L V   P
Sbjct: 58  DGTRC-ELQIHDLSVADAGEYSCMCGQERTSAT---LTVRALP 96

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 49.4 bits (118), Expect = 5e-08
 Identities = 20/111 (18%), Positives = 38/111 (34%), Gaps = 14/111 (12%)

Query: 14  TKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQ 73
           +  +      +      V A   +  ++ C +      +V W K           + V +
Sbjct: 6   SGTDVSSWIVYPSGKVYVAAVRLERVVLTCELCR-PWAEVRWTK---------DGEEVVE 55

Query: 74  NKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
           +  + +   D     L L  VQ  D G Y+C+I+    +     + V  PP
Sbjct: 56  SPALLLQKEDTVR-RLVLPAVQLEDSGEYLCEIDDESASFT---VTVTEPP 102

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 113

 Score = 44.4 bits (105), Expect = 3e-06
 Identities = 11/47 (23%), Positives = 16/47 (34%), Gaps = 2/47 (4%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
            V   I+       V       V L C  +  P   V W + DG+ +
Sbjct: 9   DVSSWIVYPSGKVYVAAVRLERVVLTCE-LCRPWAEVRWTK-DGEEV 53

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 49.7 bits (118), Expect = 6e-08
 Identities = 15/105 (14%), Positives = 34/105 (32%), Gaps = 1/105 (0%)

Query: 26  EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
            P   +  +VG++ ++ C         + +      +       V    K  S +     
Sbjct: 13  SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLKTQSGSEMKKF 72

Query: 86  SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLD 129
              L +  V  +D+G Y C   + +       +++V   P +   
Sbjct: 73  LSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG 117

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X Length = 122

 Score = 42.8 bits (100), Expect = 2e-05
 Identities = 19/140 (13%), Positives = 32/140 (22%), Gaps = 45/140 (32%)

Query: 131 TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
            S  + +  G ++ L C+A       + +  E      Y          +   L+    S
Sbjct: 14  PSHGIELSVGEKLVLNCTARTELNVGIDFNWE------YPSSKHQHKKLVNRDLKTQSGS 67

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           +  +                                          TL I  +     G 
Sbjct: 68  EMKKFLS---------------------------------------TLTIDGVTRSDQGL 88

Query: 251 YRCVAVNALGETDGFIKVYV 270
           Y C A + L        V V
Sbjct: 89  YTCAASSGLMTKKNSTFVRV 108

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 48.9 bits (117), Expect = 7e-08
 Identities = 24/140 (17%), Positives = 35/140 (25%), Gaps = 55/140 (39%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P            + EG  VT  C   G P+P + W + DGK I+              
Sbjct: 8   APFFE--MKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFK-DGKQISPK------------ 52

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
                                                 D Y   R ++G     +L   +
Sbjct: 53  -------------------------------------SDHYTIQRDLDGTC---SLHTTA 72

Query: 243 ILSHQFGSYRCVAVNALGET 262
                 G+Y  +A N  G  
Sbjct: 73  STLDDDGNYTIMAANPQGRI 92

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 110

 Score = 45.0 bits (107), Expect = 2e-06
 Identities = 19/105 (18%), Positives = 30/105 (28%), Gaps = 9/105 (8%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P F   + +     G      C V    + K+ W K           ++  ++   +I  
Sbjct: 9   PFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKD--------GKQISPKSDHYTIQR 60

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVVVPPR 125
           +   +  LH       D G Y     N     S  G L V     
Sbjct: 61  DLDGTCSLHTTASTLDDDGNYTIMAANPQGRISCTGRLMVQAVNS 105

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 48.8 bits (117), Expect = 7e-08
 Identities = 20/147 (13%), Positives = 30/147 (20%), Gaps = 57/147 (38%)

Query: 116 GYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP 175
           G   +   PRI          V  G       +    P   V W   +G  +  +     
Sbjct: 1   GPFTLDHAPRIT--LRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH-NGVELQESS---- 53

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
                                                   ++                  
Sbjct: 54  -------------------------------KIHYTNTSGVL------------------ 64

Query: 236 MTLKIRSILSHQFGSYRCVAVNALGET 262
            TL+I    +   G+YR V  N  GE 
Sbjct: 65  -TLEILDCHTDDSGTYRAVCTNYKGEA 90

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens} Length = 103

 Score = 42.7 bits (101), Expect = 1e-05
 Identities = 12/84 (14%), Positives = 25/84 (29%), Gaps = 10/84 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PR    + +     G+       V++    +V W           +   + ++ ++  T 
Sbjct: 9   PRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYH---------NGVELQESSKIHYTN 59

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ 105
                  L + D    D G Y   
Sbjct: 60  TSGVL-TLEILDCHTDDSGTYRAV 82

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 49.2 bits (117), Expect = 8e-08
 Identities = 18/109 (16%), Positives = 36/109 (33%), Gaps = 5/109 (4%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
             F E     T  VG++      V+    LR+  + W K     + S   K +   +   
Sbjct: 8   ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFE 67

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRI 126
                + ++ + +   ++   G Y C++       S    L+V      
Sbjct: 68  RHSRVY-TFEMQIIKAKDNFAGNYRCEVTYKDKFDSCSFDLEVHESTGT 115

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 126

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 12/131 (9%), Positives = 30/131 (22%), Gaps = 49/131 (37%)

Query: 134 DVVVREGTEVTLECSAVGYP---EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVS 190
              V+ G ++T            +P + W +     +                       
Sbjct: 16  GGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDL----------------------- 52

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
                               ++ G  +   + +E    +  +     ++I     +  G+
Sbjct: 53  -------------------ASKAGKHLQLKETFERHSRVYTF----EMQIIKAKDNFAGN 89

Query: 251 YRCVAVNALGE 261
           YRC        
Sbjct: 90  YRCEVTYKDKF 100

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B Length = 171

 Score = 49.9 bits (119), Expect = 1e-07
 Identities = 18/145 (12%), Positives = 46/145 (31%), Gaps = 10/145 (6%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
            +   V           N+   +V W K   +     + +    +   +  + D  S  L
Sbjct: 4   QIYGVVYGNVTFHVP-SNVPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA 149
            + ++  +D   Y  +   +   + K +L V+          S  ++  E +  TL C  
Sbjct: 63  TIYNLTSSDEDEYEMESPNI-TDTMKFFLYVLEMV-------SKPMIYWECSNATLTCEV 114

Query: 150 VGYPEPYVAWRREDGKAINYNGELV 174
           +   +  +   +   + +    +  
Sbjct: 115 LEGTDVELKLYQ-GKEHLRSLRQKT 138

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 48.2 bits (115), Expect = 1e-07
 Identities = 15/106 (14%), Positives = 29/106 (27%), Gaps = 14/106 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
               + +  +    G+     CV+          W             K V  + R   T
Sbjct: 9   VGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTV---------GGKTVGSSSRFQAT 59

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRI 126
               +   L +R+   +D G  +  +  +   + K  L V      
Sbjct: 60  RQGRKY-ILVVREAAPSDAGEVVFSVRGL---TSKASLIVRERSGP 101

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 9/46 (19%), Positives = 14/46 (30%), Gaps = 4/46 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECS-AVGYPEPYVAWRREDGKAI 167
              I   +    + V EG   + EC  +         W    GK +
Sbjct: 8   HVGIT--KRLKTMEVLEGESCSFECVLSHESASDPAMWTV-GGKTV 50

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 21/140 (15%), Positives = 30/140 (21%), Gaps = 56/140 (40%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P+I          V +G++       VG P+P   W +                     
Sbjct: 5   APKIF--ERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-------------------- 42

Query: 183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS 242
                                          G  I   D        +       L IR 
Sbjct: 43  -------------------------------GVKIERSDRIYWYWPEDNVC---ELVIRD 68

Query: 243 ILSHQFGSYRCVAVNALGET 262
           +      S    A+N  GET
Sbjct: 69  VTGEDSASIMVKAINIAGET 88

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4 Length = 99

 Score = 45.3 bits (108), Expect = 1e-06
 Identities = 21/100 (21%), Positives = 37/100 (37%), Gaps = 10/100 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+  E + + T   G +A     V    + +  W K         +   + ++ R+   +
Sbjct: 6   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYK---------NGVKIERSDRIYWYW 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
            +     L +RDV   D    M + IN    TS   +L V
Sbjct: 57  PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 96

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 47.7 bits (114), Expect = 2e-07
 Identities = 24/103 (23%), Positives = 36/103 (34%), Gaps = 15/103 (14%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
            +F E + N  AT G  A++ C +   +   V W K          H+ +    R S+  
Sbjct: 20  IKFTEGLRNEEATEGATAVLRCELS--KMAPVEWWK---------GHETLRDGDRHSLRQ 68

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
            D     L +R +   D G Y+C             L V   P
Sbjct: 69  -DGARCELQIRGLVAEDAGEYLCMCGKE---RTSAMLTVRAMP 107

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens} Length = 113

 Score = 38.9 bits (91), Expect = 3e-04
 Identities = 9/52 (17%), Positives = 15/52 (28%), Gaps = 6/52 (11%)

Query: 117 YLQVV-VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
            L V  +P +        +    EG    L C         V W +   + +
Sbjct: 12  MLTVRALPIKFT--EGLRNEEATEGATAVLRCELSKMAP--VEWWK-GHETL 58

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 50.5 bits (121), Expect = 3e-07
 Identities = 21/97 (21%), Positives = 35/97 (36%), Gaps = 7/97 (7%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
           P ++  P  L      +  EL C T   P S   W    G ++     +    ++N    
Sbjct: 353 PFIMDAPRDLN-ISEGRMAELKCRTP--PMSSVKWLLPNGTVLSHASRHPRISVLNDG-- 407

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
             TL    +L    G Y C+  N  G ++    + V+
Sbjct: 408 --TLNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVS 442

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A Length = 452

 Score = 40.1 bits (94), Expect = 7e-04
 Identities = 22/110 (20%), Positives = 41/110 (37%), Gaps = 15/110 (13%)

Query: 16  CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
           C  P +        ++  + G+ A + C         V W+     T+LS      +++ 
Sbjct: 350 CSAPFIMDAPR---DLNISEGRMAELKCRTP--PMSSVKWLL-PNGTVLS----HASRHP 399

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
           R+S+  +      L+   V  +D G Y C + N    ++   YL V    
Sbjct: 400 RISVLNDGT----LNFSHVLLSDTGVYTCMVTNVAGNSNASAYLNVSTAG 445

>1vt4_I APAF-1 related killer DARK; drosophila apoptosome, apoptosis, programmed cell death; HET: DTP; 6.90A {Drosophila melanogaster} PDB: 3iz8_A* Length = 1221

 Score = 51.0 bits (121), Expect = 3e-07
 Identities = 56/371 (15%), Positives = 107/371 (28%), Gaps = 129/371 (34%)

Query: 26  EPVANVT----ATVGKEALMACV-----VENLREYKVAWVKM--------ITQTILSIHH 68
            P  NV        GK  +   V     V+   ++K+ W+ +        + + +  + +
Sbjct: 148 RPAKNVLIDGVLGSGKTWVALDVCLSYKVQCKMDFKIFWLNLKNCNSPETVLEMLQKLLY 207

Query: 69  KVVT-------QNKRVSITFNDHRSWFLH-------------LRDVQET------DRGWY 102
           ++          +  + +  +  ++                 L +VQ        +    
Sbjct: 208 QIDPNWTSRSDHSSNIKLRIHSIQAELRRLLKSKPYENCLLVLLNVQNAKAWNAFNLS-- 265

Query: 103 MCQINTVPMTSQKG---YLQVVVPPRILLDRTSTDVVVREGTEV---TLECSAVGYPE-- 154
            C+I  +  T  K    +L       I LD  S  +   E   +    L+C     P   
Sbjct: 266 -CKI--LLTTRFKQVTDFLSAATTTHISLDHHSMTLTPDEVKSLLLKYLDCRPQDLPREV 322

Query: 155 ----PYV----AWRREDGKAI--NYNGELVPPMLTI---------PNQLEGAFVSQTVEL 195
               P      A    DG A   N+       + TI         P +    F   +V  
Sbjct: 323 LTTNPRRLSIIAESIRDGLATWDNWKHVNCDKLTTIIESSLNVLEPAEYRKMFDRLSV-- 380

Query: 196 HCHTEAFPASLN--------YWTNEKGD--MIITGDDYEDSRLING---------YSCHM 236
                 FP S +         W +      M++  +      L+            S ++
Sbjct: 381 ------FPPSAHIPTILLSLIWFDVIKSDVMVVV-NKLHKYSLVEKQPKESTISIPSIYL 433

Query: 237 TLKI---------RSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLH 287
            LK+         RSI+ H +   +        ++D  I  Y   +D   +        H
Sbjct: 434 ELKVKLENEYALHRSIVDH-YNIPKTF------DSDDLIPPY---LDQYFYS-------H 476

Query: 288 MGAYLCIASNG 298
           +G +L    + 
Sbjct: 477 IGHHLKNIEHP 487

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 46.6 bits (111), Expect = 4e-07
 Identities = 16/103 (15%), Positives = 29/103 (28%), Gaps = 14/103 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
             F E + N+       A+  C  E+     V W K             +  + +   + 
Sbjct: 9   NCFTEELTNLQVEEKGTAVFTCKTEH-PAATVTWRK---------GLLELRASGKHQPSQ 58

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
                  L +  +++ D   Y C I        +  L V    
Sbjct: 59  EGLTL-RLTISALEKADSDTYTCDIGQA---QSRAQLLVQGRR 97

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 40.0 bits (94), Expect = 1e-04
 Identities = 8/45 (17%), Positives = 13/45 (28%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
                     T++ V E       C    +P   V WR+     +
Sbjct: 8   ANCFT--EELTNLQVEEKGTAVFTCK-TEHPAATVTWRK-GLLEL 48

>2edo_A CD48 antigen; beta-sandwich, IG-fold, B-lymphocyte activation marker blast-1, BCM1 surface antigen, leukocyte antigen MEM-102, TCT.1; NMR {Homo sapiens} Length = 121

 Score = 47.2 bits (112), Expect = 4e-07
 Identities = 18/105 (17%), Positives = 38/105 (36%), Gaps = 9/105 (8%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNK-----RV 77
               + ++T   G    +         YK + W     Q I+    +     +     RV
Sbjct: 7   GQGHLVHMTVVSGSNVTLNISESLPENYKQLTWFYTFDQKIVEWDSRKSKYFESKFKGRV 66

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            +   D +S  L++  VQ+ D   Y+ ++       Q+  +++ V
Sbjct: 67  RL---DPQSGALYISKVQKEDNSTYIMRVLKKTGNEQEWKIKLQV 108

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 46.7 bits (111), Expect = 4e-07
 Identities = 22/150 (14%), Positives = 34/150 (22%), Gaps = 56/150 (37%)

Query: 123 PPRIL--LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTI 180
            P              V     V   C A G P P + W +        NG+        
Sbjct: 4   APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK--------NGKEFKQ---- 51

Query: 181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI 240
                                                         ++ N    H +L +
Sbjct: 52  ---------------------------------------EHRIGGYKVRNQ---HWSLIM 69

Query: 241 RSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            S++    G+Y CV  N  G  +    + V
Sbjct: 70  ESVVPSDKGNYTCVVENEYGSINHTYHLDV 99

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A Length = 100

 Score = 41.3 bits (97), Expect = 3e-05
 Identities = 18/105 (17%), Positives = 30/105 (28%), Gaps = 14/105 (13%)

Query: 22  PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           P +                      C         + W+K         + K   Q  R+
Sbjct: 5   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK---------NGKEFKQEHRI 55

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQVV 121
                 ++ W L +  V  +D+G Y C   N     +   +L VV
Sbjct: 56  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 100

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 46.2 bits (110), Expect = 7e-07
 Identities = 21/108 (19%), Positives = 37/108 (34%), Gaps = 16/108 (14%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
             P   RF E + ++    G  A + CV+ ++    V W            + V+    +
Sbjct: 6   SGP--VRFQEALKDLEVLEGGAATLRCVLSSVAA-PVKWCY---------GNNVLRPGDK 53

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
            S+         L +R+++  D G Y C        +    L V   P
Sbjct: 54  YSLRQEGAMLE-LVVRNLRPQDSGRYSCSFGDQ---TTSATLTVTALP 97

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A Length = 103

 Score = 40.4 bits (95), Expect = 6e-05
 Identities = 12/45 (26%), Positives = 14/45 (31%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           P R        D+ V EG   TL C       P V W       +
Sbjct: 8   PVRFQ--EALKDLEVLEGGAATLRCVLSSVAAP-VKWCY-GNNVL 48

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A Length = 108

 Score = 46.1 bits (109), Expect = 7e-07
 Identities = 21/104 (20%), Positives = 29/104 (27%), Gaps = 5/104 (4%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
             F     +   TVG     +  V     L+   V W K      LS       Q     
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKG-KWVDLSSKVGQHLQLHDSY 63

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
              +    + LH+ D Q    G Y C++            L V 
Sbjct: 64  DRASKVYLFELHITDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH 107

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 118

 Score = 46.3 bits (109), Expect = 9e-07
 Identities = 20/106 (18%), Positives = 39/106 (36%), Gaps = 5/106 (4%)

Query: 22  PRFAEPVANVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
             F +   +V+   GK+A++   V       +  + W K     + S      +  +  +
Sbjct: 13  GVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHN 72

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVP 123
              N + +  LH+  V   DRG+Y  ++       S    + V  P
Sbjct: 73  SASNVY-TVELHIGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP 117

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 45.4 bits (108), Expect = 1e-06
 Identities = 16/103 (15%), Positives = 35/103 (33%), Gaps = 14/103 (13%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
               +P+ +     G++  + C +       V W+K           K + ++++  +  
Sbjct: 9   AAIIKPLEDQWVAPGEDVELRCELSRAGT-PVHWLK---------DRKAIRKSQKYDVVC 58

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
               +  L +R     D G Y C++     T+    L V    
Sbjct: 59  EGTMA-MLVIRGASLKDAGEYTCEVEASKSTAS---LHVEEKA 97

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 103

 Score = 41.5 bits (98), Expect = 3e-05
 Identities = 15/45 (33%), Positives = 19/45 (42%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           P  I+  +   D  V  G +V L C       P V W + D KAI
Sbjct: 8   PAAII--KPLEDQWVAPGEDVELRCELSRAGTP-VHWLK-DRKAI 48

>2or8_A Hepatitis A virus cellular receptor 1 homolog; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 2.50A {Mus musculus} Length = 116

 Score = 46.1 bits (109), Expect = 1e-06
 Identities = 20/107 (18%), Positives = 34/107 (31%), Gaps = 11/107 (10%)

Query: 29  ANVTATVGKEALMACVVE-NLREYKVAWVK------MITQTILSIHHKVVTQNK--RVSI 79
             V   VG    + C            W +          T++  +   VT  K  R ++
Sbjct: 5   VEVKGVVGHPVTLPCTYSTYRGITTTCWGRGQCPSSACQNTLIWTNGHRVTYQKSSRYNL 64

Query: 80  TFNDHRSWF-LHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPP 124
             +       L + +  E+D G Y C++        QK    + V P
Sbjct: 65  KGHISEGDVSLTIENSVESDSGLYCCRVEIPGWFNDQKVTFSLQVKP 111

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens} Length = 440

 Score = 48.6 bits (116), Expect = 1e-06
 Identities = 19/100 (19%), Positives = 31/100 (31%), Gaps = 11/100 (11%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR---LING 231
            P++  P            EL C       +   W    G ++         R   L +G
Sbjct: 341 APVIVEPPADLNVTEGMAAELKCRAST-SLTSVSWITPNGTVMTH--GAYKVRIAVLSDG 397

Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
                TL   ++     G Y C+  N++G T     + V 
Sbjct: 398 -----TLNFTNVTVQDTGMYTCMVSNSVGNTTASATLNVT 432

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E* Length = 204

 Score = 47.2 bits (111), Expect = 1e-06
 Identities = 35/195 (17%), Positives = 56/195 (28%), Gaps = 34/195 (17%)

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVR 138
           I F        +L    +  RG Y C+ +     ++   LQV        D         
Sbjct: 41  IGFLTEDKKKWNLGSNAKDPRGMYQCKGSQ----NKSKPLQVYYRMGSADDAKKDAAKKD 96

Query: 139 EGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH 198
           +  +   +       E                              + +    TV L C 
Sbjct: 97  DAKKDDAKKDGSDGNEEMGGIT--------------------QTPYKVSISGTTVILTC- 135

Query: 199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA 258
              +P S   W  +  D  I GD+  D + I     H++LK  S L    G Y C    +
Sbjct: 136 -PQYPGSEILW--QHNDKNIGGDE--DDKNIGSDEDHLSLKEFSELEQS-GYYVCYPRGS 189

Query: 259 LGETDG---FIKVYV 270
             E      +++  V
Sbjct: 190 KPEDANFYLYLRARV 204

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus} Length = 361

 Score = 47.9 bits (114), Expect = 2e-06
 Identities = 11/81 (13%), Positives = 28/81 (34%), Gaps = 6/81 (7%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
            T+ + C T+    +  + +    + +++        + NG      L  + +     G 
Sbjct: 262 DTLTIRCDTKQQGMTKVWVSP-SNEQVLSQGSNGSVSVRNG-----DLFFKKVQVEDGGV 315

Query: 251 YRCVAVNALGETDGFIKVYVN 271
           Y C A+         +++ V 
Sbjct: 316 YTCYAMGETFNETLSVELKVY 336

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 45.1 bits (107), Expect = 2e-06
 Identities = 20/105 (19%), Positives = 38/105 (36%), Gaps = 12/105 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
               + +A++T    ++A+  C V +  +    W K         +   V  +KR++I+ 
Sbjct: 9   LEVLQDIADLTVKAAEQAVFKCEVSD-EKVTGKWYK---------NGVEVRPSKRITISH 58

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRI 126
              R   L + DV+  D G Y    +     S    L  +     
Sbjct: 59  -VGRFHKLVIDDVRPEDEGDYTFVPDGY-ALSLSAKLNFLEIKVS 101

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus} Length = 106

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 7/45 (15%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
              +L  +   D+ V+   +   +C  V   +    W + +G  +
Sbjct: 8   QLEVL--QDIADLTVKAAEQAVFKCE-VSDEKVTGKWYK-NGVEV 48

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 12/88 (13%), Positives = 23/88 (26%), Gaps = 11/88 (12%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
               +P+  V   VG+ A     +    +    W             + +  +    I  
Sbjct: 6   IEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKL---------KGQPLAASPDCEIIE 55

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQINTV 109
           +  +   L L + Q    G    Q    
Sbjct: 56  DGKKH-ILILHNCQLGMTGEVSFQAANT 82

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A Length = 93

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 7/45 (15%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
              +   +    V V  G     E   +  P+ +  W+   G+ +
Sbjct: 5   LIEVE--KPLYGVEVFVGETAHFEIE-LSEPDVHGQWKL-KGQPL 45

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 44.6 bits (106), Expect = 2e-06
 Identities = 21/138 (15%), Positives = 33/138 (23%), Gaps = 56/138 (40%)

Query: 134 DVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
             V  EG  V   C    Y +   V W     + +                         
Sbjct: 10  HAVGEEGGHVKYVCKIENYDQSTQVTWYF-GVRQL------------------------- 43

Query: 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR 252
                       S  Y    +  +                     L ++ I     G+YR
Sbjct: 44  ----------ENSEKYEITYEDGV-------------------AILYVKDITKLDDGTYR 74

Query: 253 CVAVNALGETDGFIKVYV 270
           C  VN  GE   + +++V
Sbjct: 75  CKVVNDYGEDSSYAELFV 92

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens} Length = 97

 Score = 43.5 bits (103), Expect = 5e-06
 Identities = 19/101 (18%), Positives = 39/101 (38%), Gaps = 12/101 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
              +  + +     G      C +EN  +  +V W             + +  +++  IT
Sbjct: 2   AMVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYF---------GVRQLENSEKYEIT 52

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
           + D  +  L+++D+ + D G Y C+ +N     S    L V
Sbjct: 53  YEDGVA-ILYVKDITKLDDGTYRCKVVNDYGEDSSYAELFV 92

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 44.3 bits (105), Expect = 3e-06
 Identities = 19/104 (18%), Positives = 37/104 (35%), Gaps = 14/104 (13%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           K  +  F++   +V    G  A+     E     KV W +             ++ + + 
Sbjct: 5   KKPVSAFSKKPRSVEVAAGSPAVFEAETER-AGVKVRWQR---------GGSDISASNKY 54

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVV 121
            +     R   L +R+V   D+G Y     +   +  K  L+V+
Sbjct: 55  GLATEGTRHT-LTVREVGPADQGSYAVIAGS---SKVKFDLKVI 94

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens} Length = 95

 Score = 37.7 bits (88), Expect = 5e-04
 Identities = 10/47 (21%), Positives = 13/47 (27%), Gaps = 2/47 (4%)

Query: 121 VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
              P     +    V V  G+    E          V W+R  G  I
Sbjct: 4   GKKPVSAFSKKPRSVEVAAGSPAVFEAE-TERAGVKVRWQR-GGSDI 48

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} Length = 128

 Score = 44.6 bits (105), Expect = 3e-06
 Identities = 20/119 (16%), Positives = 35/119 (29%), Gaps = 25/119 (21%)

Query: 29  ANVTATVGKEALMACVV----ENLREYKVAWVKMI---TQTILSIHHKVVTQN------- 74
             V   +G    + C +      L    V W +         ++  H  +  +       
Sbjct: 10  PEVRGQLGGTVELPCHLLPPVPGLYISLVTWQRPDAPANHQNVAAFHPKMGPSFPSPKPG 69

Query: 75  -KRVSITFNDHRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            +R+S       +            L L  +   D G Y C+  T P  S +G   + V
Sbjct: 70  SERLSFVSAKQSTGQDTEAELQDATLALHGLTVEDEGNYTCEFATFPKGSVRGMTWLRV 128

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 43.9 bits (104), Expect = 4e-06
 Identities = 9/45 (20%), Positives = 16/45 (35%), Gaps = 2/45 (4%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           P  IL  +    +       V L C  +   +    W + DG+ +
Sbjct: 8   PVHILSPQDKVSLTFTTSERVVLTCE-LSRVDFPATWYK-DGQKV 50

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} Length = 104

 Score = 42.0 bits (99), Expect = 2e-05
 Identities = 16/108 (14%), Positives = 39/108 (36%), Gaps = 14/108 (12%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
             P      +   ++T T  +  ++ C +  + ++   W K           + V +++ 
Sbjct: 6   SGPVHILSPQDKVSLTFTTSERVVLTCELSRV-DFPATWYK---------DGQKVEESEL 55

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
           + +  +  +   L L + +  D G + C+   V   S    + V  P 
Sbjct: 56  LVVKMDGRKH-RLILPEAKVQDSGEFECRTEGV---SAFFGVTVQDPS 99

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A Length = 139

 Score = 44.5 bits (105), Expect = 4e-06
 Identities = 20/115 (17%), Positives = 40/115 (34%), Gaps = 14/115 (12%)

Query: 27  PVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           P   + A VG EA + C +    N    +V W +     ++ ++     Q+   +  +  
Sbjct: 12  PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 71

Query: 84  HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRIL 127
                          L +++V+ +D G Y C         +    L+V  P   +
Sbjct: 72  RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYWI 126

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus} Length = 112

 Score = 43.5 bits (102), Expect = 6e-06
 Identities = 18/107 (16%), Positives = 32/107 (29%), Gaps = 2/107 (1%)

Query: 16  CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
           C+    P+        +A  G +    C   +  +  + +        L         + 
Sbjct: 5   CDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEALQDAEMENYAHL 64

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV--PMTSQKGYLQV 120
           R         +  L LR+V+ T  G Y C I+       S    L +
Sbjct: 65  RAQGGELMEYTTILRLRNVEFTSEGXYQCVISNHFGSSYSVXAXLTI 111

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 42.8 bits (101), Expect = 1e-05
 Identities = 17/138 (12%), Positives = 27/138 (19%), Gaps = 60/138 (43%)

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
              +V  G  + L C         + W R        +G  +               S  
Sbjct: 11  ESFLVHPGDLLQLRCRLRDDV-QSINWLR--------DGVQLAE-------------SNR 48

Query: 193 VELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR 252
             +                    + +      DS                      G Y 
Sbjct: 49  TRITGEE----------------VEVQDSVPADS----------------------GLYA 70

Query: 253 CVAVNALGETDGFIKVYV 270
           CV  +  G    +  V V
Sbjct: 71  CVTSSPSGSDTTYFSVNV 88

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 99

 Score = 37.8 bits (88), Expect = 6e-04
 Identities = 13/106 (12%), Positives = 29/106 (27%), Gaps = 16/106 (15%)

Query: 20  DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI 79
                   V +     G    + C + +     + W++             + ++ R  I
Sbjct: 2   SSGSSGVEVESFLVHPGDLLQLRCRLRD-DVQSINWLR---------DGVQLAESNRTRI 51

Query: 80  TFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
           T        + ++D    D G Y C   +     +    + V    
Sbjct: 52  T-----GEEVEVQDSVPADSGLYACVTSSPSGSDTTYFSVNVSDAL 92

>2q87_A CMRF35-H antigen; all-beta, immunoglobulin, IG-superfamily, IG-V, NKP44-like, natural killer cell IG-like receptor, inhibitory receptor; 1.70A {Homo sapiens} Length = 110

 Score = 42.5 bits (100), Expect = 1e-05
 Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 9/103 (8%)

Query: 31  VTATVGKEALMACVVE-NLREYKVAWVK----MITQTILSIHHKVVTQNKRVSITFNDHR 85
           V   VG    + C  E   R     W +     +   I+        +N RVSI  +   
Sbjct: 6   VAGPVGGSLSVQCPYEKEHRTLNKYWCRPPQIFLCDKIVETKGSAGKRNGRVSIRDSPAN 65

Query: 86  SWF-LHLRDVQETDRGWYMCQINTVPMTS---QKGYLQVVVPP 124
             F + L ++ E D G Y C ++T  +         ++V V P
Sbjct: 66  LSFTVTLENLTEEDAGTYWCGVDTPWLQDFHDPVVEVEVSVFP 108

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 41.7 bits (98), Expect = 2e-05
 Identities = 18/152 (11%), Positives = 31/152 (20%), Gaps = 62/152 (40%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML 178
           +   P  +        ++V  G  + L C         + W R        +G  +    
Sbjct: 5   EQAQPWGV--PVEVESLLVHPGDLLQLRCRLRDDV-QSINWLR--------DGVQLVE-- 51

Query: 179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL 238
                      S    +                    + +      DS            
Sbjct: 52  -----------SNRTRITGEE----------------VEVRDSIPADS------------ 72

Query: 239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
                     G Y CV  +  G    +  V V
Sbjct: 73  ----------GLYACVTSSPSGSDTTYFSVNV 94

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus} Length = 95

 Score = 38.2 bits (89), Expect = 3e-04
 Identities = 17/109 (15%), Positives = 35/109 (32%), Gaps = 22/109 (20%)

Query: 19  PDMPRFAEPVA------NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT 72
           P +P  A+P        ++    G    + C + +     + W++             + 
Sbjct: 1   PTLPEQAQPWGVPVEVESLLVHPGDLLQLRCRLRD-DVQSINWLR---------DGVQLV 50

Query: 73  QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ-INTVPMTSQKGYLQV 120
           ++ R  IT        + +RD    D G Y C   +     +    + V
Sbjct: 51  ESNRTRIT-----GEEVEVRDSIPADSGLYACVTSSPSGSDTTYFSVNV 94

>2pnd_A V-SET and immunoglobulin domain containing 4; complement receptor, IG-like domain, immune system; 1.00A {Mus musculus} PDB: 2icc_A 2ice_S* 2icf_S* Length = 119

 Score = 41.9 bits (98), Expect = 3e-05
 Identities = 16/105 (15%), Positives = 37/105 (35%), Gaps = 11/105 (10%)

Query: 29  ANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNK--------RV 77
            +VT T   +  + C+ +     R+  V W+       ++I  +  T +         R+
Sbjct: 9   ESVTGTWKGDVKIQCIYDPLRGYRQVLVKWLVRHGSDSVTIFLRDSTGDHIQQAKYRGRL 68

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
            ++        L +  +Q  DR  Y C++        +     ++
Sbjct: 69  KVSHKVPGDVSLQINTLQMDDRNHYTCEVTWQTPDGNQVIRDKII 113

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 43.7 bits (102), Expect = 4e-05
 Identities = 23/189 (12%), Positives = 53/189 (28%), Gaps = 54/189 (28%)

Query: 89  LHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
           + +++      G Y  ++      ++     ++++    +         V  G E++L  
Sbjct: 147 ITIQEFTADKNGVYTVKVWGESEDSAASASTKIMLATMNVDQDVVESKTVALGNEISLNY 206

Query: 148 --------SAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHT 199
                    + G P   + +     +     G+L P        L G+ V + +E     
Sbjct: 207 VVSEDIVGDSSGMPNLTIKYNWYLQR----EGQLSPT-------LIGSEVGEALE----- 250

Query: 200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL 259
                   +     G +      Y+D+                        + CVA    
Sbjct: 251 -------GFSITPDGHLFKESATYDDT----------------------AKFWCVAKLYQ 281

Query: 260 GETDGFIKV 268
              D  ++V
Sbjct: 282 QIEDETVEV 290

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49} Length = 304

 Score = 42.5 bits (99), Expect = 8e-05
 Identities = 18/183 (9%), Positives = 39/183 (21%), Gaps = 52/183 (28%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPY---VAWRREDGKAI---------- 167
           +   + +   S       G   TL  +  G  P P      W + D +            
Sbjct: 1   MAFTVSI--QSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTK-DDQPHENNTATLTVA 57

Query: 168 ---------------NYNGE------------LVPPMLTIPNQLEGAFVSQTVELHCHTE 200
                          + +                  +     Q         VELH   +
Sbjct: 58  DATSENAGSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVK 117

Query: 201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG 260
                         +  +     +   +I+       + I+   + + G Y         
Sbjct: 118 FSGG-----KTPADNYELHYSWSKGEDVIDTTQ---DITIQEFTADKNGVYTVKVWGESE 169

Query: 261 ETD 263
           ++ 
Sbjct: 170 DSA 172

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C* Length = 218

 Score = 42.9 bits (101), Expect = 4e-05
 Identities = 17/82 (20%), Positives = 29/82 (35%), Gaps = 9/82 (10%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVV-----PPRILLDRTSTDVVVREGTE 142
             +  +     G Y CQ        +    L++VV      P +  DR     V+  G  
Sbjct: 66  FVIDHMDANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL---VLMPGEN 122

Query: 143 VTLECSAVGYPEPYVAWRREDG 164
           ++L CS+   P    +  +E  
Sbjct: 123 ISLTCSSAHIPFDRFSLAKEGE 144

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 40.8 bits (96), Expect = 4e-05
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 15/104 (14%)

Query: 22  PRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
             FA+ +        G        + +  + +V W K         + + +  + +    
Sbjct: 8   AAFAKILDPAYQVDKGGRVRFVVELAD-PKLEVKWYK---------NGQEIRPSTKYIFE 57

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
               +   L + + Q TD   Y         +++   L V   P
Sbjct: 58  HKGCQR-ILFINNCQMTDDSEYYVTAGDEKCSTE---LFVRSGP 97

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A Length = 100

 Score = 37.4 bits (87), Expect = 8e-04
 Identities = 8/34 (23%), Positives = 14/34 (41%), Gaps = 2/34 (5%)

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
              V +G  V      +  P+  V W + +G+ I
Sbjct: 17  AYQVDKGGRVRFVVE-LADPKLEVKWYK-NGQEI 48

>1neu_A Myelin P0 protein; structural protein, glycoprotein, transmembrane, phosphorylation, immunoglobulin fold, signal; 1.90A {Rattus norvegicus} SCOP: b.1.1.1 Length = 124

 Score = 41.5 bits (97), Expect = 4e-05
 Identities = 12/117 (10%), Positives = 33/117 (28%), Gaps = 17/117 (14%)

Query: 26  EPVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILSIHHKVVTQNK------ 75
                V   VG +  + C          +    W         +I      + +      
Sbjct: 4   YTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEV 63

Query: 76  -----RVSITFN-DHRSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPR 125
                R+    +   +   + + ++  +D G + C +   P +  +   + + V  +
Sbjct: 64  GTFKERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVFEK 120

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 40.8 bits (96), Expect = 5e-05
 Identities = 17/106 (16%), Positives = 29/106 (27%), Gaps = 16/106 (15%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRVS 78
               + + + TA  G+   + C V    +  V W K    I                R  
Sbjct: 8   IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIP----------GPKSRYR 56

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPP 124
           I     +   L +    + D   Y         +S K  + +   P
Sbjct: 57  IRVEGKKH-ILIIEGATKADAAEYSVMTTGG-QSSAKLSVDLKSGP 100

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4 Length = 103

 Score = 38.5 bits (90), Expect = 3e-04
 Identities = 11/45 (24%), Positives = 17/45 (37%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
              +   +   D     G  V LEC  V   +  V W + +G+ I
Sbjct: 7   GIMVT--KQLEDTTAYCGERVELECE-VSEDDANVKWFK-NGEEI 47

>3bia_X T-cell immunoglobulin and mucin domain- containing protein 4; beta barrel, immunoglobulin fold, IGV domain, TIM, glycoprotein; HET: TLA; 2.20A {Mus musculus} PDB: 3bi9_X* 3bib_X* Length = 116

 Score = 40.7 bits (95), Expect = 6e-05
 Identities = 12/106 (11%), Positives = 33/106 (31%), Gaps = 12/106 (11%)

Query: 31  VTATVGKEALMACVVENLRE--YKVAWVKMI------TQTILSIHHKVVT--QNKRVSIT 80
           +   +G+   + C   +  +    + W K           +L      +   ++ + ++ 
Sbjct: 6   IIGFLGQPVTLPCHYLSWSQSRNSMCWGKGSCPNSKCNAELLRTDGTRIISRKSTKYTLL 65

Query: 81  FNDHRSWF-LHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPP 124
                    L + +    D G Y C+I         K  +++ +  
Sbjct: 66  GKVQFGEVSLTISNTNRGDSGVYCCRIEVPGWFNDVKKNVRLELRR 111

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 40.5 bits (95), Expect = 6e-05
 Identities = 16/92 (17%), Positives = 31/92 (33%), Gaps = 11/92 (11%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           K    +       V A  G  A ++C V    + +V W K           K ++ + +V
Sbjct: 8   KVVFAKEQPAHREVQAEAGASATLSCEVAQ-AQTEVTWYK---------DGKKLSSSSKV 57

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTV 109
            +         L ++   + + G Y C+    
Sbjct: 58  RVEAVGCTR-RLVVQQAGQAEAGEYSCEAGGQ 88

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 102

 Score = 37.4 bits (87), Expect = 7e-04
 Identities = 14/49 (28%), Positives = 19/49 (38%), Gaps = 5/49 (10%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           +VV        R   +V    G   TL C  V   +  V W + DGK +
Sbjct: 8   KVVFAKEQPAHR---EVQAEAGASATLSCE-VAQAQTEVTWYK-DGKKL 51

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A* Length = 109

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 22/105 (20%), Positives = 41/105 (39%), Gaps = 13/105 (12%)

Query: 31  VTATVGKEALMACVVE---NLREYKVAWVK------MITQTILSIHHKVVT--QNKRVSI 79
               VGK A + C      +     + W K        T  +L    + VT  ++ R  +
Sbjct: 4   YKVEVGKNAYLPCSYTLPTSGTLVPMCWGKGFCPWSQCTNELLRTDERNVTYQKSSRYQL 63

Query: 80  TFNDHRSWF-LHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVV 122
             + ++    L +++V   D G Y C+I     M  +K  L++ +
Sbjct: 64  KGDLNKGDVSLIIKNVTLDDHGTYCCRIQFPGLMNDKKLELKLDI 108

>2or7_A T-cell immunoglobulin and mucin domain- containing protein 2; beta barrel, immunoglobulin fold, IGV domain, TIM, immune system; 1.50A {Mus musculus} Length = 115

 Score = 40.3 bits (94), Expect = 8e-05
 Identities = 18/114 (15%), Positives = 34/114 (29%), Gaps = 14/114 (12%)

Query: 26  EPVANVTATVGKEALMACVVENLRE--YKVAWVKM------ITQTILSIHHKVVT--QNK 75
           E    V    G    + C+          + W           ++++  +   VT  +N 
Sbjct: 2   ESHTAVQGLAGHPVTLPCIYSTHLGGIVPMCWGLGECRHSYCIRSLIWTNGYTVTHQRNS 61

Query: 76  RVSITFNDHRSWF-LHLRDVQETDRGWYMCQINTVPMTSQKGY---LQVVVPPR 125
           R  +  N       L + +    D G Y C +          Y   ++  + PR
Sbjct: 62  RYQLKGNISEGNVSLTIENTVVGDGGPYCCVVEIPGAFHFVDYMLEVKPELVPR 115

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B Length = 126

 Score = 40.2 bits (94), Expect = 1e-04
 Identities = 17/115 (14%), Positives = 36/115 (31%), Gaps = 19/115 (16%)

Query: 27  PVANVTATVGKEALMACVV----ENLREYKVAWVKMITQTILS----IHHKVVTQNKRVS 78
           P   +    G+ A + C      E+     + W+             I +          
Sbjct: 11  PEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYY 70

Query: 79  ITFNDHRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVV 122
                   +           +++ ++Q +D G Y C++   P  + K  +L V+V
Sbjct: 71  PDLKGRVHFTSNDLKSGDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVLV 125

>4ei6_A Valpha1 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_C 4elk_A 4elm_E* 3qeu_A 1ao7_D 3qdj_D 3qdg_D 3qfj_D 1qsf_D 1qse_D* 3d39_D* 3d3v_D* 3h9s_D 3pwp_D 2gj6_D 3utp_D* 3uts_D 1qrn_D 3hg1_D 3rdt_A ... Length = 208

 Score = 41.6 bits (97), Expect = 1e-04
 Identities = 24/156 (15%), Positives = 46/156 (29%), Gaps = 10/156 (6%)

Query: 31  VTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRVSITFN-DHR 85
           ++   G  A + C   +       W +       + ++SI      +  R +   N    
Sbjct: 12  LSVPEGGMASLNCTSSDRNFQYFWWYRQHSGEGPKALMSIFSDGDKKEGRFTAHLNKASL 71

Query: 86  SWFLHLRDVQETDRGWYMCQINTVPMTSQKGY----LQVVVPPRILLDRTSTDVVVREGT 141
              LH+RD Q +D   Y C  +     +Q        +V V P I     +   +    +
Sbjct: 72  HVSLHIRDSQPSDSALYFCAASEQNNYAQGLTFGLGTRVSVFPYIQNPDPAVYQLRDSKS 131

Query: 142 EVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM 177
                C    +        +     +    + V  M
Sbjct: 132 SDKSVCLFTDFD-SQTNVSQSKDSDVYITDKCVLDM 166

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens} Length = 401

 Score = 42.3 bits (98), Expect = 1e-04
 Identities = 19/80 (23%), Positives = 25/80 (31%), Gaps = 4/80 (5%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKGY-LQVVVPPRILLDRTSTDVVVREGTEVTLEC 147
             L  VQ    G Y+  I+   +  Q    L V  PP++ L   +            L C
Sbjct: 256 FWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLC 315

Query: 148 SAVG-YPEPY--VAWRREDG 164
                YP     V W    G
Sbjct: 316 LVSHFYPSGGLEVEWELRGG 335

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 39.6 bits (93), Expect = 1e-04
 Identities = 19/90 (21%), Positives = 28/90 (31%), Gaps = 15/90 (16%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVK----MITQTILSIHHKVVTQNKRV 77
                P+ +    VG    MA  V      +V W+K    +  +      ++     KR 
Sbjct: 9   VLIVTPLEDQQVFVGDRVEMAVEVSE-EGAQVMWMKNGVELTREDSFKARYRFKKDGKRH 67

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQIN 107
                      L   DV + DRG Y    N
Sbjct: 68  I----------LIFSDVVQEDRGRYQVITN 87

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens} Length = 101

 Score = 39.2 bits (92), Expect = 1e-04
 Identities = 10/45 (22%), Positives = 15/45 (33%), Gaps = 4/45 (8%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI 167
           P  I+      D  V  G  V +    V      V W + +G  +
Sbjct: 8   PVLIV--TPLEDQQVFVGDRVEMAV-EVSEEGAQVMWMK-NGVEL 48

>2frg_P TREM-like transcript-1; immunoglobulin-like, beta-sandwich, cell surface receptor, triggering receptor, platelet receptor, ITIM, immune system; 1.19A {Homo sapiens} Length = 106

 Score = 39.5 bits (92), Expect = 2e-04
 Identities = 18/100 (18%), Positives = 35/100 (35%), Gaps = 7/100 (7%)

Query: 31  VTATVGKEALMACVVE-NLREYKVAWVKMIT---QTILSIHHKVVTQNKRVSITFNDHRS 86
           + A VG   L+ C       + +  W + +    Q ++S          R +   +    
Sbjct: 7   LQAPVGSSILVQCHYRLQDVKAQKVWCRFLPEGCQPLVSSAVDRRAPAGRRTFLTDLGGG 66

Query: 87  WF-LHLRDVQETDRGWYMCQI--NTVPMTSQKGYLQVVVP 123
              + +  +QE D G Y C +     P    +  L ++ P
Sbjct: 67  LLQVEMVTLQEEDAGEYGCMVDGARGPQILHRVSLNILPP 106

>1hkf_A NKP44, NK cell activating receptor; natural cytotoxicity receptor, immunoglobulin domain; 2.2A {Homo sapiens} SCOP: b.1.1.1 Length = 122

 Score = 39.6 bits (92), Expect = 2e-04
 Identities = 18/102 (17%), Positives = 38/102 (37%), Gaps = 10/102 (9%)

Query: 31  VTATVGKEALMACVVENLRE-------YKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           + +  G+   + C               K A   +  + + S   + +    R +I  + 
Sbjct: 20  LQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDP 79

Query: 84  HRSWF-LHLRDVQETDRGWYMCQI--NTVPMTSQKGYLQVVV 122
              +F + + D++E D G Y C+I   +    S+     +VV
Sbjct: 80  DAGFFTVTMTDLREEDSGHYWCRIYRPSDNSVSKSVRFYLVV 121

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 242

 Score = 40.7 bits (95), Expect = 3e-04
 Identities = 15/100 (15%), Positives = 29/100 (29%), Gaps = 9/100 (9%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
            ++ D+     G Y C      + S+    L +VV      P + +        V  G +
Sbjct: 62  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGP---EVISGEK 118

Query: 143 VTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
           VT  C        ++  +      +      V     +  
Sbjct: 119 VTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP 158

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 41.0 bits (96), Expect = 3e-04
 Identities = 17/90 (18%), Positives = 28/90 (31%), Gaps = 10/90 (11%)

Query: 17  EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKR 76
                PRF           G+ A   C V       V W K           + + Q+ +
Sbjct: 478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHK---------DDRELKQSVK 528

Query: 77  VSITFNDHRSWFLHLRDVQETDRGWYMCQI 106
               +N +    L +  V+  D+G Y  + 
Sbjct: 529 YMKRYNGNDY-GLTINRVKGDDKGEYTVRA 557

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A Length = 573

 Score = 40.6 bits (95), Expect = 4e-04
 Identities = 19/137 (13%), Positives = 31/137 (22%), Gaps = 55/137 (40%)

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTV 193
              V EG      C  +    P V W ++D +                       + Q+V
Sbjct: 491 GTEVGEGQSANFYCRVIASSPPVVTWHKDDRE-----------------------LKQSV 527

Query: 194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC 253
           +           L           I     +D                       G Y  
Sbjct: 528 KYMKRYNGNDYGL----------TINRVKGDDK----------------------GEYTV 555

Query: 254 VAVNALGETDGFIKVYV 270
            A N+ G  +  + + V
Sbjct: 556 RAKNSYGTKEEIVFLNV 572

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X Length = 126

 Score = 38.8 bits (90), Expect = 4e-04
 Identities = 10/66 (15%), Positives = 19/66 (28%), Gaps = 6/66 (9%)

Query: 209 WTNEKGDMIITGDDYEDSRL----INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG 264
           W       ++    +  +       N    H  L++        G+Y  +A N  G+   
Sbjct: 34  WL--FNGSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA 91

Query: 265 FIKVYV 270
            I    
Sbjct: 92  SIMAAF 97

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens} Length = 184

 Score = 39.0 bits (91), Expect = 6e-04
 Identities = 16/87 (18%), Positives = 31/87 (35%), Gaps = 11/87 (12%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQK-GYLQVVV-----PPRILLDRTSTDVVVREGTE 142
           L +  ++ +  G Y C      + S     L++V       P +          V  G +
Sbjct: 54  LFIPAMKRSLAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSA---QPGPAVSSGGD 110

Query: 143 VTLECSAVGYPEPYVAWRREDGKAINY 169
           VTL+C      + +  ++  +G    Y
Sbjct: 111 VTLQCQTRYGFDQFALYK--EGDPAPY 135

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 Length = 188

 Score = 39.0 bits (91), Expect = 7e-04
 Identities = 13/97 (13%), Positives = 24/97 (24%), Gaps = 3/97 (3%)

Query: 89  LHLRDVQETDRGWYMCQINTVPMTSQKG---YLQVVVPPRILLDRTSTDVVVREGTEVTL 145
            ++ D+     G Y C      + S+      L V                V  G +VT 
Sbjct: 59  FYIPDMNSRMAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTF 118

Query: 146 ECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            C        ++  +      +      V     +  
Sbjct: 119 YCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP 155

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	314
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	100.0
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	100.0
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	100.0
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	100.0
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	100.0
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.98
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.98
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.98
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.97
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.97
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.97
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.97
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	99.97
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.97
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.97
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.97
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.97
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	99.97
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.97
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.97
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.97
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.96
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.96
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	99.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.96
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.96
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.96
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.96
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	99.96
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.96
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	99.96
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	99.96
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.96
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.96
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.96
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	99.96
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.95
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.95
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.95
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	99.95
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.95
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	99.95
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	99.95
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.94
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.94
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.94
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.94
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.94
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.94
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.94
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.94
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	99.94
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.94
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.94
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.93
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.93
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.93
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.93
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	99.93
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.93
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.93
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.93
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.93
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.92
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.92
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.92
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.92
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.92
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.92
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.92
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.91
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.91
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.91
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.91
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	99.91
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.91
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.91
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.91
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.91
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	99.91
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.91
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.91
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.91
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.9
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.9
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.9
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.9
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.9
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.9
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.9
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.9
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.9
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.89
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.89
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.89
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.89
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.89
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.89
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	99.89
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.89
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.89
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.89
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.88
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.88
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.88
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	99.88
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.88
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.88
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.88
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.88
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.88
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.87
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.87
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.87
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.87
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.87
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.87
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.87
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.87
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.87
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.87
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.87
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.87
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.87
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.87
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.87
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	99.87
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.86
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	99.86
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	99.86
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.86
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.86
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.86
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.86
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.86
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.86
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.86
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.86
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.86
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.86
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.86
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.86
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.85
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.85
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.85
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.85
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.85
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.85
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.85
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.85
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	99.85
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.85
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.85
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.85
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.85
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.84
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	99.84
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.84
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.84
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.84
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	99.84
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.84
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.84
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	99.84
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	99.83
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	99.83
3ux9_B	256	SCFV antibody; five helices, long loop connecting	99.83
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.83
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.83
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.83
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	99.83
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.83
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	99.83
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.82
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.82
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.82
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.82
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.82
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	99.82
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	99.82
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	99.81
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	99.81
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.81
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	99.81
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.81
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.81
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	99.81
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.8
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	99.8
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.8
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	99.8
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.79
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	99.79
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.79
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	99.79
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	99.79
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.79
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	99.78
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	99.78
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	99.78
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	99.78
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.77
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	99.77
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	99.77
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.76
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.76
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	99.75
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	99.75
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.74
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	99.74
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	99.74
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	99.74
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	99.74
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	99.74
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.74
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	99.74
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.73
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	99.72
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	99.72
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.72
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	99.71
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.71
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	99.71
1ypz_E	207	T cell receptor delta, beta-2-microglobulin; H2-T2	99.7
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.7
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.7
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	99.7
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	99.69
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.69
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	99.69
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	99.68
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	99.68
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.68
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	99.68
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.68
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	99.68
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	99.68
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.68
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.67
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.67
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	99.67
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	99.67
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	99.67
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	99.66
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.66
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.66
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	99.65
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	99.65
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.65
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.65
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	99.65
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	99.65
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	99.65
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.65
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	99.65
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	99.64
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	99.64
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	99.64
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	99.64
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	99.64
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	99.64
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	99.64
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	99.64
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	99.64
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.64
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	99.64
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.63
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	99.63
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	99.63
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.63
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.63
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.63
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	99.63
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	99.63
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	99.62
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.62
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.62
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.62
1he7_A	126	High affinity nerve growth factor receptor; transf	99.62
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.62
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.62
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	99.61
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	99.61
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.61
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	99.61
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	99.61
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	99.61
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.6
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.6
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	99.6
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	99.6
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	99.59
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	99.59
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.59
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	99.59
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	99.59
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.59
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	99.59
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	99.59
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	99.59
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	99.59
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	99.59
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.58
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	99.58
1hxm_A	229	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.57
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	99.57
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	99.57
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.57
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.56
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	99.56
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.56
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	99.56
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	99.56
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	99.55
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.55
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	99.55
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	99.55
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	99.55
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	99.55
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	99.55
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.55
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	99.55
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	99.55
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.54
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	99.54
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	99.54
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	99.54
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.54
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	99.54
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	99.54
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	99.54
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	99.54
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	99.53
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	99.53
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	99.53
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	99.53
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	99.53
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	99.52
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	99.52
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	99.52
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	99.52
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.52
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.52
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	99.52
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	99.51
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	99.51
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	99.51
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.51
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.51
2ens_A	96	Advanced glycosylation END product-specific recept	99.5
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	99.5
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	99.5
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	99.5
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.49
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	99.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	99.49
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	99.49
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	99.49
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	99.49
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	99.49
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.49
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.49
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.48
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	99.48
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	99.48
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	99.48
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	99.48
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	99.48
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	99.48
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	99.47
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	99.47
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.47
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.47
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	99.47
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	99.47
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	99.47
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	99.47
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	99.47
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	99.47
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	99.46
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	99.46
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	99.46
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	99.46
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	99.46
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	99.46
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	99.46
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	99.46
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.46
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	99.45
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	99.45
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	99.45
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	99.45
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	99.45
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	99.45
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	99.45
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	99.45
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	99.45
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	99.45
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	99.45
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	99.45
4hwu_A	95	Fibroblast growth factor receptor 2; FGFR2, KGFR,	99.44
3sob_L	237	Antibody light chain; beta propeller, protein bind	99.44
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	99.44
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.44
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	99.43
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.43
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.43
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	99.43
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	99.43
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	99.43
3shs_A	304	HOC head outer capsid protein; immunoglobulin-like	99.43
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	99.43
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	99.43
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	99.43
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	99.43
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	99.43
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	99.43
2eys_A	210	NKT15; natural killer T cell receptor, immune syst	99.42
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	99.42
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.42
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	99.42
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	99.42
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.42
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	99.41
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	99.41
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	99.41
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	99.41
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	99.41
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	99.4
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	99.4
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	99.4
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	99.4
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	99.4
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	99.4
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	99.4
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.39
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	99.39
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	99.38
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	99.38
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	99.38
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	99.38
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	99.38
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	99.37
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	99.37
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	99.37
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	99.37
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	99.37
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	99.36
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	99.36
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	99.36
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	99.36
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	99.36
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	99.36
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	99.36
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	99.36
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	99.36
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	99.35
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	99.35
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	99.35
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	99.34
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	99.34
4f9p_D	254	103.2 anti-BTN3A1 antibody fragment; B7 superfamil	99.34
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	99.34
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	99.34
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	99.34
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	99.34
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	99.34
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	99.34
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	99.33
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	99.33
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	99.33
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	99.33
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	99.33
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	99.33
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	99.32
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	99.32
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	99.31
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	99.31
1c5d_H	215	Monoclonal antibody against the main immunogenic t	99.31
1he7_A	126	High affinity nerve growth factor receptor; transf	99.31
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	99.31
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	99.31
3umt_A	256	SCFV heavy chain and light chain; stability engine	99.31
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	99.31
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	99.3
1xau_A	122	B- and T-lymphocyte attenuator; IG domain, beta sa	99.3
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	99.3
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	99.3
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	99.29
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	99.29

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=3.7e-35  Score=263.45  Aligned_cols=271  Identities=21%  Similarity=0.365  Sum_probs=202.9

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      +..+|.|+.++..+.+.+|+++.|.|.+.+.|.+.+.|+|++.. +        ....++.+...+ ..++|.|.+++.+
T Consensus         2 v~~pP~f~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~g~~-l--------~~~~~~~~~~~~-~~~~L~I~~v~~~   71 (570)
T 3b43_A            2 AMEPPYFIEPLEHVEAAIGEPITLQCKVDGTPEIRIAWYKEHTK-L--------RSAPAYKMQFKN-NVASLVINKVDHS   71 (570)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEEEEEEESSSSCEEEEECSSSB-C--------CCCSSEEEECCT-TEEEEEESSCCGG
T ss_pred             CCCCCcceEECCceEEcCCCEEEEEEEEccCCCCEEEEEECCEE-c--------cCCCCEEEEEEC-CEEEEEEccCChh
Confidence            35689999999999999999999999999999999999996543 2        223444444322 2348999999999


Q ss_pred             CCeEEEEEEecCC-CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee
Q psy15734         98 DRGWYMCQINTVP-MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL  173 (314)
Q Consensus        98 d~G~Y~C~~~~~~-~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~  173 (314)
                      |+|.|+|.+.|.. .......|.|..   +|.+...  ..+..+..|+.+.|.|.+.|.|.|.+.|++ ++..+......
T Consensus        72 D~G~Y~C~a~N~~g~~~~~~~l~v~~~~~~p~~~~~--~~~~~~~~G~~v~l~C~~~g~p~~~v~W~k-~g~~l~~~~~~  148 (570)
T 3b43_A           72 DVGEYTCKAENSVGAVASSAVLVIKERKLPPSFARK--LKDVHETLGFPVAFECRINGSEPLQVSWYK-DGELLKDDANL  148 (570)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEECCCCCCCEESSC--CCCEEEETTSCEEEEEEEESSSSCEEEEEE-TTEECCCCSSE
T ss_pred             hCEEEEEEEEeCCceEEEEEEEEECCCCCCCccccc--CCCeEecCCCeEEEEEEEccCCCCEEEEEE-CCEECcCCCCE
Confidence            9999999998753 333444555543   4444432  345667889999999999999999999999 66655432110


Q ss_pred             ----------C-------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCce
Q psy15734        174 ----------V-------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL  206 (314)
Q Consensus       174 ----------~-------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  206 (314)
                                .                                     ||.+...+....+.+|+++.|.|.+.|.|+|.
T Consensus       149 ~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~  228 (570)
T 3b43_A          149 QTSFIHNVATLQILQTDQSHVGQYNCSASNPLGTASSSAKLTLSEHEVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIK  228 (570)
T ss_dssp             EEEEETTEEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCE
T ss_pred             EEEEECCEEEEEECcCChHHCEEEEEEEEeCCcEEEEEEEEEEcCCCCCCccccCCceeEecCCCeEEEEEEEEECCCCE
Confidence                      0                                     67777777778889999999999999999999


Q ss_pred             eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE---Ec
Q psy15734        207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR---KM  283 (314)
Q Consensus       207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~---~~  283 (314)
                      +.|++++ ..+....++.+....+    ...|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.-...+.   .+
T Consensus       229 i~W~k~g-~~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~~~~~~v  303 (570)
T 3b43_A          229 ITWAKDN-REIRPGGNYKMTLVEN----TATLTVLKVTKGDAGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIV  303 (570)
T ss_dssp             EEEEETT-EECCTTSSEEEEEETT----EEEEEESSBCGGGCEEEEEEEEETTEEEEEEEEECCBCCCEEEECCCSBCCE
T ss_pred             EEEEECC-EECcCCCcEEEEEECC----EEEEEEcccCcccCEEEEEEEECCCCcEEEEEEEEeecCCcccccCCCccEE
Confidence            9999974 4444455555443332    24899999999999999999999999988888888876542111111   12


Q ss_pred             cccccEeEEEEEeeccCCCccce
Q psy15734        284 SRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       284 ~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      ..++...+.|.+.+.|.|.+.|.
T Consensus       304 ~~g~~~~l~C~~~g~P~p~v~W~  326 (570)
T 3b43_A          304 KQDEHTRYECKIGGSPEIKVLWY  326 (570)
T ss_dssp             ESSCEEEEEEEEESSSSCEEEEE
T ss_pred             cCCCcEEEEEEEeeCCCCEEEEe
Confidence            33445569999999999999995

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=100.00  E-value=9e-35  Score=260.97  Aligned_cols=270  Identities=20%  Similarity=0.295  Sum_probs=206.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++. .        +..+.++.+..... ...|.|.+++.+|
T Consensus       195 ~~pp~~~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~k~g~-~--------i~~~~~~~~~~~~~-~~~L~i~~v~~~D  264 (570)
T 3b43_A          195 EVPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDNR-E--------IRPGGNYKMTLVEN-TATLTVLKVTKGD  264 (570)
T ss_dssp             CCCCEEEECCCCBCCBSBSCEEEEEEEESSSCCEEEEEETTE-E--------CCTTSSEEEEEETT-EEEEEESSBCGGG
T ss_pred             CCCCccccCCceeEecCCCeEEEEEEEEECCCCEEEEEECCE-E--------CcCCCcEEEEEECC-EEEEEEcccCccc
Confidence            456777777888889999999999999998889999999553 2        22334444433222 2379999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee----
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL----  173 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~----  173 (314)
                      +|.|+|.+.|. +..+..+.|.|..+|.+.... .....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+......    
T Consensus       265 ~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~P~p~v~W~k-~~~~l~~~~~~~~~~  342 (570)
T 3b43_A          265 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSF  342 (570)
T ss_dssp             CEEEEEEEEETTEEEEEEEEECCBCCCEEEECC-CSBCCEESSCEEEEEEEEESSSSCEEEEEE-TTEECCCSSSEEEEE
T ss_pred             CEEEEEEEECCCCcEEEEEEEEeecCCcccccC-CCccEEcCCCcEEEEEEEeeCCCCEEEEeE-CCEECCCCCcEEEEE
Confidence            99999999775 445667788888888876543 233457899999999999999999999999 66554332210    


Q ss_pred             ------C----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC
Q psy15734        174 ------V----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK  213 (314)
Q Consensus       174 ------~----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~  213 (314)
                            .                                  +|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++ 
T Consensus       343 ~~~~~~L~i~~v~~~D~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v~W~k~-  421 (570)
T 3b43_A          343 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD-  421 (570)
T ss_dssp             ETTEEEEEEESCCGGGCEEEEEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCCEEEET-
T ss_pred             ECCEEEEEECCCCcccCEEEEEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEEEEEEC-
Confidence                  0                                  78887777888889999999999999999999999997 


Q ss_pred             CeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE----EEccccccE
Q psy15734        214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI----RKMSRLHMG  289 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~----~~~~~~~~g  289 (314)
                      +..+..+.++.+... +.   ..+|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|  .+..    ..+..++..
T Consensus       422 g~~l~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~~~l~v~~~P--~~~~~~~~~~~~~g~~~  495 (570)
T 3b43_A          422 KRELRSGKKYKIMSE-NF---LTSIHILNVDSADIGEYQCKASNDVGSDTCVGSITLKAPP--RFVKKLSDISTVVGEEV  495 (570)
T ss_dssp             TEECCSSSSEEEEEE-TT---EEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECCCC--EEEECCCCBCCBTTCCE
T ss_pred             CEECcCCCCEEEEEc-CC---EEEEEECCCChhhCEEEEEEEEECCCeEEEEEEEEeccCC--cccccCCCceecCCCeE
Confidence            444545555554322 21   2489999999999999999999999999888888887653  2222    123344556


Q ss_pred             eEEEEEeeccCCCccceE
Q psy15734        290 AYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       290 ~~~C~a~~~~~~~~~w~v  307 (314)
                      .+.|.+.+.++|.+.|..
T Consensus       496 ~l~c~~~g~p~~~v~W~k  513 (570)
T 3b43_A          496 QLQATIEGAEPISVAWFK  513 (570)
T ss_dssp             EEEEEEESCSSCCCEEEE
T ss_pred             EEEEEEecCCCCEEEEEe
Confidence            799999999999999953

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=100.00  E-value=3e-33  Score=229.43  Aligned_cols=236  Identities=22%  Similarity=0.368  Sum_probs=183.8

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+        ..+.++.+..... ...|.|.+++.+|
T Consensus         3 ~~pP~~~~~p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~~~-~~~--------~~~~~~~~~~~~~-~~~L~i~~v~~~d   72 (284)
T 2rik_A            3 MAPPFFDLKPVSVDLALGESGTFKCHVTGTAPIKITWAKDN-REI--------RPGGNYKMTLVEN-TATLTVLKVTKGD   72 (284)
T ss_dssp             CCCCEEEECCCCEEEETTCCEEEEEEEESSSCCEEEEEETT-EEC--------CSSSSEEEEEETT-EEEEEESSCCGGG
T ss_pred             cCCCEEEccccceEecCCCcEEEEEEEEcCCCCEEEEEECC-EEC--------cCCCcEEEEEcCC-EEEEEEecCCccc
Confidence            46788888899999999999999999998888899999954 322        2233444433222 3489999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee----
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL----  173 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~----  173 (314)
                      +|.|+|.+.+. +..+..+.|.|..+|.+.... .....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+......    
T Consensus        73 ~G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~-~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~  150 (284)
T 2rik_A           73 AGQYTCYASNVAGKDSCSAQLGVQEPPRFIKKL-EPSRIVKQDEHTRYECKIGGSPEIKVLWYK-DETEIQESSKFRMSF  150 (284)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECCCEEEECC-CSEEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCCSSSEEEEE
T ss_pred             CEEEEEEEEECCceEEEEEEEEccCCCcccccC-CCceEecCCceEEEEEEEeeeCCCEEEEEE-CCEECcCCCcEEEEE
Confidence            99999999765 444667788898888876543 345568899999999999999999999999 55554322210    


Q ss_pred             ------C----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC
Q psy15734        174 ------V----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK  213 (314)
Q Consensus       174 ------~----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~  213 (314)
                            .                                  +|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++ 
T Consensus       151 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~~-  229 (284)
T 2rik_A          151 VESVAVLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHKD-  229 (284)
T ss_dssp             ETTEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEET-
T ss_pred             cCCEEEEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEEC-
Confidence                  0                                  66666666777889999999999999999999999997 


Q ss_pred             CeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        214 GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       214 ~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +..+....++.+.....    .+.|.|.++..+|+|.|+|.|.|..|.....+.|.|.
T Consensus       230 ~~~~~~~~~~~~~~~~~----~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  283 (284)
T 2rik_A          230 KRELRSGKKYKIMSENF----LTSIHILNVDSADIGEYQCKASNDVGSYTCVGSITLK  283 (284)
T ss_dssp             TEEECBTTTEEEEEETT----EEEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEECcCCCCEEEEEcCC----EEEEEEcCCCcccCEEEEEEEEeCCCceeEEEEEEEc
Confidence            45455555554432211    2489999999999999999999999999999888874

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=100.00  E-value=8.9e-32  Score=232.29  Aligned_cols=264  Identities=13%  Similarity=0.076  Sum_probs=168.9

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      +.++..+..+.|.+|+++.|.|.+.+.|.+.+.|++++... ...  .....+.+        ...+|.|.+++.+|+|.
T Consensus        49 ~~~~~~~~~v~V~~G~~v~L~C~v~g~P~p~i~W~~~~~~l-~~~--~~~~~~~~--------~~~sL~I~~v~~~D~G~  117 (423)
T 3qs7_E           49 SGTVYEAAAVEVDVSASITLQVLVDAPGNISCLWVFKHSSL-NCQ--PHFDLQNR--------GVVSMVILKMTETQAGE  117 (423)
T ss_dssp             -------CEEEECSSCCEEEEEECSCCSSCEEEEEETTEEE-CCC--CBC-------------CEEEEEESSCCSSSCSE
T ss_pred             CcceeccccEEEecCCcEEEEEEEEcCCCCeEEEEECCCcc-Ccc--ceeccccc--------eEEEEEEeecCcccCEE
Confidence            34455566899999999999999999999999999965331 110  00111111        12369999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec-----------
Q psy15734        102 YMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-----------  169 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~-----------  169 (314)
                      |+|.+.|. +.....+.|.|..+|.+...   ....+..|+.+.|.|.+.|+|.|.+.|++. +..+..           
T Consensus       118 Y~C~a~N~~g~~~~~~~l~V~~~p~~~~~---~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~-~~~~~~~~~~~~~~~~~  193 (423)
T 3qs7_E          118 YLLFIQSEATNYTILFTVSIRNTLLYTLR---RPYFRKMENQDALVCISESVPEPIVEWVLC-DSQGESCKEESPAVVKK  193 (423)
T ss_dssp             EEEEEEC--CEEEEEEEEEEC-----CEE---EEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEE
T ss_pred             EEEEEEcCCCcEEEEEEEEEecCcccccc---CCcEeccCCceEEEEEEeeecCCeEEEEEC-CCCCccccccccccccc
Confidence            99999875 33445566777665654321   122345688889999999999999999984 322210           


Q ss_pred             C---------CeeC-------------CCeEE------cCCCcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecC
Q psy15734        170 N---------GELV-------------PPMLT------IPNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITG  220 (314)
Q Consensus       170 ~---------~~~~-------------~p~~~------~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~  220 (314)
                      .         +.+.             .-.+.      .++....+.+|+++.|.|.+.| .|.|.+.|++++.. +...
T Consensus       194 ~~~~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k~g~~-l~~~  272 (423)
T 3qs7_E          194 EEKVLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTTLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA-LEEG  272 (423)
T ss_dssp             CCSEECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSSTTEEEEETTSCEEEEEEEEESSSCCCEEEEESSSB-CCGG
T ss_pred             cceEEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccCCCceEEeCCCeEEEEEEEEcCCCCcEEEEEECCEE-cccc
Confidence            0         0000             00111      1344567889999999999999 67799999997553 3222


Q ss_pred             CceeeeEe-eCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE------EccccccEeEE
Q psy15734        221 DDYEDSRL-ING-YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR------KMSRLHMGAYL  292 (314)
Q Consensus       221 ~~~~~~~~-~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~------~~~~~~~g~~~  292 (314)
                      ..+..... .+. ....++|.|.++..+|+|.|+|.|.|.   ....+.|.|..++  .+.+.      .+..++...+.
T Consensus       273 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~---~~~~~~L~V~~~p--~i~~~~~~~~~~v~~G~~v~l~  347 (423)
T 3qs7_E          273 NYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG--FINATNSSEDYEIDQYEEFCFS  347 (423)
T ss_dssp             GEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTE---EEEEEEEEEESSC--EEEEC---CEECCCTTCCCCEE
T ss_pred             ceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecC---CCceEEEEEEeCC--cceEcCCCccEEecCCCeEEEE
Confidence            22211111 111 223458999999999999999999998   6777788887653  23221      23334455699


Q ss_pred             EEEeeccCCCccce
Q psy15734        293 CIASNGVVPSVSHR  306 (314)
Q Consensus       293 C~a~~~~~~~~~w~  306 (314)
                      |.+.+.|.|.++|.
T Consensus       348 C~~~g~P~p~i~W~  361 (423)
T 3qs7_E          348 VRFKAYPQIRCTWT  361 (423)
T ss_dssp             EEEEEESCCEEEEE
T ss_pred             EEEEEcCCCeEEEE
Confidence            99999999999996

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=100.00  E-value=1.1e-31  Score=220.80  Aligned_cols=237  Identities=20%  Similarity=0.350  Sum_probs=174.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|..+|....+.+|+++.|.|.+.+.+ .+.+.|++.++..+.       ....++.+...+...+.|.|.+++.+|+
T Consensus         2 ~~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~D~   74 (291)
T 1qz1_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDA   74 (291)
T ss_dssp             CCCEEEESSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCC-------SSCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CcceEecCCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECc-------cCCceEEEEEcCCCeEEEEEecCCCCCC
Confidence            57788889999999999999999998875 689999995544321       2234555544333455899999999999


Q ss_pred             eEEEEEEecCCC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecC-------
Q psy15734        100 GWYMCQINTVPM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN-------  170 (314)
Q Consensus       100 G~Y~C~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~-------  170 (314)
                      |.|+|.+.+...  .+..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+...       
T Consensus        75 G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~--~~~~~~~g~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~  151 (291)
T 1qz1_A           75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRDVILKKDVRFIV  151 (291)
T ss_dssp             EEEEEEEECTTSCEEEEEEEEEEECCSEEEECC--SSEEEETTSCEEECCEEECSSCCEEEEEE-TTSCSSTTCCTTEEE
T ss_pred             EEEEEEEEcCCCCeeEEEEEEEeeccccccCCC--CcccccCCCeEEEEEEeccCCCCEEEEEE-CCEEcccCCCceEEE
Confidence            999999977542  3455677777777766543  55678899999999999999999999999 55443211       


Q ss_pred             ---CeeC-----------------------------------CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEe
Q psy15734        171 ---GELV-----------------------------------PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWT  210 (314)
Q Consensus       171 ---~~~~-----------------------------------~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~  210 (314)
                         +.+.                                   +|.+....  ....+..|+++.|.|.+.|.|.|.+.|+
T Consensus       152 ~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~  231 (291)
T 1qz1_A          152 LSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWT  231 (291)
T ss_dssp             CTTSCEEETTCCGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEE
T ss_pred             ccCCcEEEccCccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEE
Confidence               1000                                   44444332  2446778999999999999999999999


Q ss_pred             cCCCeeeecCCc--eeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        211 NEKGDMIITGDD--YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       211 ~~~~~~~~~~~~--~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +++. .+.....  .......++    +.|.|.++..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       232 ~~g~-~~~~~~~~~~~~~~~~~~----~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  290 (291)
T 1qz1_A          232 KDGE-PIENEEEDDEKHIFSDDS----SELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA  290 (291)
T ss_dssp             ETTE-ECCCC--CCSSEEECTTS----CEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             ECCE-ECcCCCCCCcceEEcCCC----cEEEEEecChhcCEEEEEEEEeCCCceEEEEEEEEEc
Confidence            9744 3332221  111111221    3899999999999999999999999999999998864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1.5e-31  Score=237.88  Aligned_cols=274  Identities=16%  Similarity=0.207  Sum_probs=196.0

Q ss_pred             eccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         15 KCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        15 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+.+..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++.++..+        ..+.++.+....    .|.|.++
T Consensus       108 ~l~V~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l--------~~~~~~~~~~~~----~L~i~~~  175 (524)
T 2ec8_A          108 YVFVRDPAKLFLVDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPL--------PKDLRFIPDPKA----GIMIKSV  175 (524)
T ss_dssp             EEECCCSSCSBCCCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCC--------CSSCEEEEETTT----EEEEESC
T ss_pred             EEEECCCCcccccccceEEEcCCeEEEECcCCCCccceEEEEccCCcCc--------CCCCceeECCCc----cEEEecc
Confidence            3344456666677778889999999999999886668999998555432        223344333222    6999999


Q ss_pred             cCCCCe-EEEEEEecCCCc--ceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEecccCCCc-eEEEcCCCce
Q psy15734         95 QETDRG-WYMCQINTVPMT--SQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKA  166 (314)
Q Consensus        95 ~~~d~G-~Y~C~~~~~~~~--~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-~~W~~~~~~~  166 (314)
                      +.+|+| .|+|.+.+....  +..+.|.|.    .+|.+...  +....+.+|+.+.|.|.+.+.|.|. +.|++. +..
T Consensus       176 ~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~--~~~~~v~~G~~v~L~C~~~g~p~p~~i~W~~~-~~~  252 (524)
T 2ec8_A          176 KRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVS--KASYLLREGEEFTVTCTIKDVSSSVYSTWKRE-NSQ  252 (524)
T ss_dssp             CGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECS--CSEEEEETTSCEEEEEEEEESSTTCEEEEEET-TCS
T ss_pred             chhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEec--CCcceEEcCCcEEEEEEEecCCCcEEEEEEeC-CCC
Confidence            999999 999999765322  346677776    56666554  3556789999999999999998887 999994 444


Q ss_pred             e--ecC--------------CeeC---------------------------------CCeEEcCC---CcceeecCccEE
Q psy15734        167 I--NYN--------------GELV---------------------------------PPMLTIPN---QLEGAFVSQTVE  194 (314)
Q Consensus       167 ~--~~~--------------~~~~---------------------------------~p~~~~~~---~~~~v~~g~~~~  194 (314)
                      +  ...              +.+.                                 +|.+...+   ....+.+|+++.
T Consensus       253 ~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~  332 (524)
T 2ec8_A          253 TKLQEKYNSWHHGDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVD  332 (524)
T ss_dssp             CCCCEEEEEEECSSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEE
T ss_pred             CccccccccccccCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEE
Confidence            1  100              0000                                 56555433   367889999999


Q ss_pred             EEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        195 LHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       195 l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.|.+.|.|.|. +.|++++..+.....++......+.+...+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       333 l~C~~~g~P~p~~v~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~  412 (524)
T 2ec8_A          333 LIVEYEAFPKPEHQQWIYMNRTFTDKWEDYPKSENESNIRYVSELHLTRLKGTEGGTYTFLVSNSDVNAAIAFNVYVNTK  412 (524)
T ss_dssp             EEEEEEEESCCCEEEEESSSCBCSSSBCCEESCCSSSCCEEEEEEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEECEE
T ss_pred             EEEEEeecCCCcEEEEEECCeeccCCccceeEEccCCCceeEEEEEEeecCcccCeEEEEEEEecCceEEEEEEEEEecC
Confidence            999999999999 9999985443332223332222222445679999999999999999999999999999999988766


Q ss_pred             CCCeeEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        274 DGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       274 ~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |  .+.....  ...|.+.|.+.+.|.|.+.|..
T Consensus       413 P--~i~~~~~--~~~g~l~C~~~g~P~p~i~W~~  442 (524)
T 2ec8_A          413 P--EILTYDR--LVNGMLQCVAAGFPEPTIDWYF  442 (524)
T ss_dssp             E--EEEEEEC--CSSSCEEEEEEEESCCEEECCC
T ss_pred             C--eEeeccc--CcCcEEEEEEEeecCCEEEEEE
Confidence            4  2322221  2234999999999999999964

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=100.00  E-value=5.5e-31  Score=218.15  Aligned_cols=232  Identities=20%  Similarity=0.368  Sum_probs=167.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe-CCceeEEEEEeeecC-
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF-NDHRSWFLHLRDVQE-   96 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~-   96 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +         ...++.... .+.....|.|.+++. 
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k~g~~-i---------~~~~~~~~~~~~~~~~~L~i~~~~~~   73 (304)
T 2yd9_A            4 EEPPRFIKEPKDQIGVSGGVASFVCQATGDPKPRVTWNKKGKK-V---------NSQRFETIEFDESAGAVLRIQPLRTP   73 (304)
T ss_dssp             CCCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEC-----------------CTTEEEEEETTTTEEEEEECSCCTT
T ss_pred             ccCCeeeecCCceEecCCCeEEEEEEEEEeCCCeEEEEECCEE-C---------CCCceEEEEecCCCceEEEEeccccc
Confidence            4679999999999999999999999999888899999995432 2         123433332 222234799999998 


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeC-------CceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceee
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVP-------PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~  168 (314)
                      +|+|.|+|.+.+. +.....+.|.|..+       |.+...  +....+..|+.+.|.|.+.+.|.|.+.|++ ++..+.
T Consensus        74 ~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~--~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k-~~~~~~  150 (304)
T 2yd9_A           74 RDENVYECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMG--PQLKVVERTRTATMLCAASGNPDPEITWFK-DFLPVD  150 (304)
T ss_dssp             TTCSEEEEEEECSSCEECCEEEEEEECGGGCCTTCCEEEEC--CCCEEEETTSCEEECCEEECSSCCEEEEEE-TTEECC
T ss_pred             CCCeEEEEEEECCCCeEEEEEEEEEeccccCCCCCCeeecC--CccEEEeCCCeEEEEEECccCCCCeEEEEE-CCEECc
Confidence            9999999999765 44456677888765       334333  356678899999999999999999999999 555443


Q ss_pred             cCC-----------eeC-------------------------------------CCeEEcCCCcceeecCccEEEEEEEe
Q psy15734        169 YNG-----------ELV-------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTE  200 (314)
Q Consensus       169 ~~~-----------~~~-------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~  200 (314)
                      ...           .+.                                     +|.+...+....+.+|+++.|.|.+.
T Consensus       151 ~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~  230 (304)
T 2yd9_A          151 PSASNGRIKQLRSGALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAV  230 (304)
T ss_dssp             GGGGTTSEEECTTSCEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEE
T ss_pred             CCCCcceEEeCCCeEEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEe
Confidence            210           000                                     45555566667789999999999999


Q ss_pred             ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       201 g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      |.|.|.+.|++++ ..+.....+.     .+   ...|.|.++  +|+|.|+|.|.|..|.....+.|.|...+
T Consensus       231 g~p~p~v~W~~~~-~~l~~~~~~~-----~~---~~~L~i~~~--~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  293 (304)
T 2yd9_A          231 GSPMPYVKWMQGA-EDLTPEDDMP-----VG---RNVLELTDV--KDSANYTCVAMSSLGVIEAVAQITVKSLP  293 (304)
T ss_dssp             EESCCEEEEEETT-EECSCSSSCC-----BS---EEEEEECSC--CSCEEEEEEEEETTEEEEEEEEEC-----
T ss_pred             eeCCCEEEEEECC-EECCCccccc-----CC---cEEEEEccc--ccCEEEEEEEEeCCCcEEEEEEEEEecCc
Confidence            9999999999974 3333322211     11   236777665  69999999999999999999999887654

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=100.00  E-value=1e-30  Score=232.53  Aligned_cols=268  Identities=15%  Similarity=0.145  Sum_probs=194.9

Q ss_pred             eeeeccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEE
Q psy15734         12 FKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        12 ~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      ....+.+..+|.+...+..+.+.+|++++|.|.+.+    .+.|++++.. +            .  ...   ..+.|.|
T Consensus        27 ~~i~l~v~~pP~i~~~~~~~~v~~G~~v~l~C~~~~----~v~W~~~~~~-~------------~--~~~---~~~~L~I   84 (524)
T 2ec8_A           27 PSVSPGEPSPPSIHPGKSDLIVRVGDEIRLLCTDPG----FVKWTFEILD-E------------T--NEN---KQNEWIT   84 (524)
T ss_dssp             ------CCCCCEEESCCSEEECCTTSCEEEEEECTT----EEEEEEESSS-C------------C--EEE---CSSEEEE
T ss_pred             CeEEcCCCCCCccCCCCceEEEeCCCeEEEEEeCCc----eEEEcCCCcc-c------------c--ccC---ccceEEE
Confidence            334445667888887788899999999999999986    9999996642 1            0  001   1237999


Q ss_pred             eeecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecC-
Q psy15734         92 RDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN-  170 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~-  170 (314)
                      .+++.+|+|.|+|.+.+ + .+..+.|.|..+|.+..  .+....+.+|+.+.|.|.+.+.+.+.+.|++.++..+... 
T Consensus        85 ~~~~~~D~G~Y~C~a~n-g-~~~~~~l~V~~p~~~~~--~~~~~~v~~G~~v~l~C~~~~~~~~~v~W~~~~g~~l~~~~  160 (524)
T 2ec8_A           85 EKAEATNTGKYTCTNKH-G-LSNSIYVFVRDPAKLFL--VDRSLYGKEDNDTLVRCPLTDPEVTNYSLKGCQGKPLPKDL  160 (524)
T ss_dssp             SSCCSTTCEEEEEEETT-S-CEEEEEEECCCSSCSBC--CCCCCCEETTSCEEECCCBSCCCCSCEEEECSSSCCCCSSC
T ss_pred             cccchhhCEEEEEeecC-C-cceEEEEEECCCCcccc--cccceEEEcCCeEEEECcCCCCccceEEEEccCCcCcCCCC
Confidence            99999999999999977 3 46667788777766553  2456678899999999999987779999998666554321 


Q ss_pred             --------------------C-eeC-------------------------CCeEEcCCCcceeecCccEEEEEEEeecCC
Q psy15734        171 --------------------G-ELV-------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       171 --------------------~-~~~-------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~  204 (314)
                                          + .+.                         +|.+...+....+.+|+++.|.|.+.|.|.
T Consensus       161 ~~~~~~~~~L~i~~~~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~  240 (524)
T 2ec8_A          161 RFIPDPKAGIMIKSVKRAYHRLCLHCSVDQEGKSVLSEKFILKVRPAFKAVPVVSVSKASYLLREGEEFTVTCTIKDVSS  240 (524)
T ss_dssp             EEEEETTTEEEEESCCGGGTTCEEEEEEC----CCCCCCEECCEECCCCSCCEEECSCSEEEEETTSCEEEEEEEEESST
T ss_pred             ceeECCCccEEEeccchhhCCceEEEEEEECCceEEEEEEEEEEEeCCCCCCcEEecCCcceEEcCCcEEEEEEEecCCC
Confidence                                1 111                         567777777778999999999999999999


Q ss_pred             ce-eEEecCCCee-eecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--
Q psy15734        205 SL-NYWTNEKGDM-IITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--  280 (314)
Q Consensus       205 p~-~~W~~~~~~~-~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--  280 (314)
                      |. +.|++++... +.......+. ........+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...+..  
T Consensus       241 p~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~~~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~  319 (524)
T 2ec8_A          241 SVYSTWKRENSQTKLQEKYNSWHH-GDFNYERQATLTISSARVNDSGVFMCYANNTFGSANVTTTLEVVDKGFINIFPMI  319 (524)
T ss_dssp             TCEEEEEETTCSCCCCEEEEEEEC-SSSCEEEEEEEEESSCCTTTCEEEEEEEECSSCEEEEEEEEEEESSCEEEEEESS
T ss_pred             cEEEEEEeCCCCCccccccccccc-cCCccceEEEEEECCCCHHHCEEEEEEEEecCCceEEEEEEEEeccCceEeecCC
Confidence            87 9999986552 1111111111 01123345699999999999999999999999999888888888654322211  


Q ss_pred             ---EEccccccEeEEEEEeeccCCC-ccce
Q psy15734        281 ---RKMSRLHMGAYLCIASNGVVPS-VSHR  306 (314)
Q Consensus       281 ---~~~~~~~~g~~~C~a~~~~~~~-~~w~  306 (314)
                         ..+..++...+.|.+.+.|.|. +.|.
T Consensus       320 ~~~~~v~~G~~v~l~C~~~g~P~p~~v~W~  349 (524)
T 2ec8_A          320 NTTVFVNDGENVDLIVEYEAFPKPEHQQWI  349 (524)
T ss_dssp             CSEEEECTTCCEEEEEEEEEESCCCEEEEE
T ss_pred             CceEEEcCCCcEEEEEEEeecCCCcEEEEE
Confidence               2344556667999999999998 9995

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.98  E-value=8.9e-32  Score=230.15  Aligned_cols=266  Identities=20%  Similarity=0.216  Sum_probs=182.9

Q ss_pred             CCCceecCCcceEE---EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee-c
Q psy15734         20 DMPRFAEPVANVTA---TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV-Q   95 (314)
Q Consensus        20 ~~p~~~~~~~~~~v---~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-~   95 (314)
                      ..|.|+..|....+   .+|+.+.|.|.+.|.|.+.+.|++++ ..+..      ..+.++.+..     +.|.|.+. +
T Consensus         4 ~~P~f~~~P~~~~~~~~~eg~~v~L~C~~~g~P~p~i~W~k~g-~~l~~------~~~~~~~~~~-----g~l~i~~~~~   71 (384)
T 3kld_A            4 SGPVFVQEPSHVMFPLDSEEKKVKLSCEVKGNPKPHIRWKLNG-TDVDI------GMDFRYSVVD-----GSLLINNPNK   71 (384)
T ss_dssp             EEEEEEECCCCEEEETTCSCSEEEECCEEEEESCCEEEEEETT-EECCC----------CEEEET-----TEEEEESCCH
T ss_pred             CCCEEEeCCcceEeecCCCCCeEEEEeEecCCCCCEEEEEECC-EECcC------CCCccEEEEC-----CEEEEcCCCC
Confidence            35788888877776   57899999999999999999999954 43211      1123333321     26777776 8


Q ss_pred             CCCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCCe
Q psy15734         96 ETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGE  172 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~~  172 (314)
                      .+|+|.|+|.+.|....  +....|.+...+.+.... .....+.+|+.+.|.|... +.|.+.+.|++ ++.++.....
T Consensus        72 ~~D~G~Y~C~A~N~~G~~~s~~~~l~v~~~~~~~~~~-~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~-~~~~~~~~~~  149 (384)
T 3kld_A           72 TQDAGTYQCIATNSFGTIVSREAKLQFAYLENFKTRT-RSTVSVRRGQGMVLLCGPPPHSGELSYAWIF-NEYPSYQDNR  149 (384)
T ss_dssp             HHHCEEEEEEEEETTEEEECCCEEEEEEEECCCSCCC-CCCEEEEETCCEEECCCCCSEESCEEEEEEE-TTEECCCSSS
T ss_pred             cccCEEEEEEEEcCcccEEecceEEEEecccccccCC-CCceeEEcCCCeEEecCCCCCCCCeEEEEEE-CCCCCEeecc
Confidence            89999999999876332  334556665544433222 3456788999999999765 45778999998 4443321110


Q ss_pred             ---------eC---------------------------C----------------CeEE-cCCCcceeecCccEEEEEEE
Q psy15734        173 ---------LV---------------------------P----------------PMLT-IPNQLEGAFVSQTVELHCHT  199 (314)
Q Consensus       173 ---------~~---------------------------~----------------p~~~-~~~~~~~v~~g~~~~l~C~~  199 (314)
                               +.                           +                |.+. ..+....+.+|+++.|.|.+
T Consensus       150 ~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~  229 (384)
T 3kld_A          150 RFVSQETGNLYIAKVEKSDVGNYTCVVTNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQFPETVPAEKGTTVKLECFA  229 (384)
T ss_dssp             EEECTTTCCEEESSCCGGGCEEEEEEEEETTTTEEEECCCEEEEEEEEEECCCEEEEEEEECCSEEEEETTSCEEEEEEE
T ss_pred             EEEEcCCCcEEEeecCHHHCceEEEEEecccccceeeCCceEEEEccCCcccccCCceeecCCCceEecCCCcEEEEEEE
Confidence                     00                           0                1111 12345567889999999999


Q ss_pred             eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeE
Q psy15734        200 EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQ  279 (314)
Q Consensus       200 ~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~  279 (314)
                      .|.|.|.+.|+++++..+......   ...++     .|.|.++..+|+|.|+|.|.|..|.......|.|...|.-...
T Consensus       230 ~g~P~p~i~W~k~~~~~~~~~~~~---~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~  301 (384)
T 3kld_A          230 LGNPVPTILWRRADGKPIARKARR---HKSNG-----ILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQI  301 (384)
T ss_dssp             EEESCCEEEEEETTCCCCCTTCEE---CTTSC-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEC
T ss_pred             eecCCCcEEEEeCCCcccccccee---cCCCc-----EEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccC
Confidence            999999999999766544322111   11233     8999999999999999999999999988888888776421111


Q ss_pred             --EEEccccccEeEEEEEeeccCCCccceE
Q psy15734        280 --IRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       280 --~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                        ...+..++...+.|.|.+.|.|.+.|..
T Consensus       302 ~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k  331 (384)
T 3kld_A          302 INDIHVAMEESVFWECKANGRPKPTYRWLK  331 (384)
T ss_dssp             CCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred             CCceEecCCCCEEEEeECCccCCCeEEEEE
Confidence              1234445556799999999999999953

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.98  E-value=7.9e-31  Score=215.75  Aligned_cols=236  Identities=19%  Similarity=0.345  Sum_probs=172.3

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      ..|.|..++..+.+.+|+++.|.|.+.+.+. .+.|++.++..+        ..+.++.+..++. ...|.|.+++.+|+
T Consensus         3 ~~p~v~~~~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~--------~~~~~~~~~~~~~-~~~L~i~~~~~~D~   72 (291)
T 2wim_A            3 ALLQVTISLSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKI--------ISTQRVVVQKEGV-RSRLTIYNANIEDA   72 (291)
T ss_dssp             CCCEEEESCSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBC--------CCBTTEEEEEETT-EEEEEECSCCGGGC
T ss_pred             CCceEEEeccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCc--------cCCCcEEEecCCC-EEEEEEccCCcccC
Confidence            4688889999999999999999999998765 899999554432        2344555554432 23799999999999


Q ss_pred             eEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec--------
Q psy15734        100 GWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY--------  169 (314)
Q Consensus       100 G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~--------  169 (314)
                      |.|+|.+.+....  ...+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+..        
T Consensus        73 G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~--~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~  149 (291)
T 2wim_A           73 GIYRCQATDAKGQTQEATVVLEIYQKLTFREVV--SPQEFKQGEDAEVVCRVSSSPAPAVSWLY-HNEEVTTISDNRFAM  149 (291)
T ss_dssp             EEEEEEEECSSSCEEEEEEEEEEECCCBCCSCC--CSEEEETTSCEEECCCCBCSSCCEEEEEC-C----CBCCCSSEEE
T ss_pred             EEEEEEEecccCceEEEEEEEEecCCcceEeCC--CChhhcCCCCEEEEEEEccCCCCEEEEEE-CCccccccCCceEEE
Confidence            9999999765333  345667777777765443  45678899999999999999999999998 4443321        


Q ss_pred             --CCeeC-----------------------------------CCeEEcCCC--cceeecCccEEEEEEEeecCCceeEEe
Q psy15734        170 --NGELV-----------------------------------PPMLTIPNQ--LEGAFVSQTVELHCHTEAFPASLNYWT  210 (314)
Q Consensus       170 --~~~~~-----------------------------------~p~~~~~~~--~~~v~~g~~~~l~C~~~g~p~p~~~W~  210 (314)
                        ++.+.                                   +|.+.....  ...+.+|+++.|.|.+.|.|.|.+.|+
T Consensus       150 ~~~~~L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~  229 (291)
T 2wim_A          150 LANNNLQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWF  229 (291)
T ss_dssp             CTTSCEEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEE
T ss_pred             ccCCCEEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEE
Confidence              11110                                   344333332  346778999999999999999999999


Q ss_pred             cCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      ++ +..+....++.+. ..+     +.|.|.++..+|+|.|+|.|.|..|....++.|.|...+.
T Consensus       230 ~~-g~~~~~~~~~~~~-~~~-----~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  287 (291)
T 2wim_A          230 RN-GKLIEENEKYILK-GSN-----TELTVRNIINSDGGPYVCRATNKAGEDEKQAFLQVFVQHH  287 (291)
T ss_dssp             ET-TEECCCTTTEEEC-STT-----CEEEEESCCSTTCEEEEEEEEETTEEEEEEEEEEC-----
T ss_pred             EC-CEECcCCccEEEc-CCc-----cEEEEeeCCcccCEEEEEEEEECCCceeeeEEEEEEEecc
Confidence            97 4444444443322 122     2899999999999999999999999999999999887653

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.98  E-value=7.3e-31  Score=225.79  Aligned_cols=268  Identities=19%  Similarity=0.291  Sum_probs=191.5

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee-
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV-   94 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~-   94 (314)
                      .......|..+|..+.+.+|+++.|.|.+.+ .+.+.+.|++++ ..+.      ...+.+.....++    .|.|.++ 
T Consensus        17 ~~~~~~~~~~~P~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g-~~~~------~~~~~~~~~~~~~----~l~i~~~~   85 (403)
T 3laf_A           17 GGRRSLHFVSEPSDAVTMRGGNVLLNCSAESDRGVPVIKWKKDG-LILA------LGMDDRKQQLPNG----SLLIQNIL   85 (403)
T ss_dssp             --CCSSEEEECCCCEEECTTCCEEECCEEECTTCCCEEEEEETT-EECC------TTSCTTEEECTTS----CEEECSCC
T ss_pred             CCceeEEEEeCCCceEEecCCcEEEEEEcCCCCCCceEEEEECC-EECc------cCCcccEEEecCC----cEEEeeee
Confidence            3455677888999999999999999999976 577899999954 3321      1122344333222    5777777 


Q ss_pred             ----cCCCCeEEEEEEecC-CC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCcee
Q psy15734         95 ----QETDRGWYMCQINTV-PM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI  167 (314)
Q Consensus        95 ----~~~d~G~Y~C~~~~~-~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~  167 (314)
                          +.+|+|.|+|.+.+. ..  .+..+.+.|..+|.+...  +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+
T Consensus        86 ~~~~~~~D~G~Y~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~--~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~-~~~~~  162 (403)
T 3laf_A           86 HSRHHKPDEGLYQCEASLGDSGSIISRTAKVMVAGPLRFLSQ--TESITAFMGDTVLLKCEVIGDPMPTIHWQK-NQQDL  162 (403)
T ss_dssp             CBTTBCSSCEEEEEEEECGGGCEEECCCEEEEECCCCEECSC--CCCEEEETTSCEEECCCEECSSCCEEEEEE-SSSBC
T ss_pred             ccCCCCCcceEEEEEEEeCCCccEEEEEEEEEecCCCccccC--CCcEEEEcCCeEEEEEEEcccCCCeEEEEE-CCEec
Confidence                778999999999743 22  244566777777766543  356778999999999999999999999999 55443


Q ss_pred             ec-----------CCeeC----------------------------------C------CeEEcCCCcceeecCccEEEE
Q psy15734        168 NY-----------NGELV----------------------------------P------PMLTIPNQLEGAFVSQTVELH  196 (314)
Q Consensus       168 ~~-----------~~~~~----------------------------------~------p~~~~~~~~~~v~~g~~~~l~  196 (314)
                      ..           .+.+.                                  +      +.+...+....+.+|+++.|.
T Consensus       163 ~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~  242 (403)
T 3laf_A          163 NPIPGDSRVVVLPSGALQISRLQPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLE  242 (403)
T ss_dssp             CCCTTCCSEEECTTSCEEECSCCGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEEC
T ss_pred             cccCCceEEEEcCCceEEEcccccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEE
Confidence            21           01000                                  1      123334556678899999999


Q ss_pred             EEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       197 C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.+.+.|.|.+.|++++.........+  ....+.     .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|  
T Consensus       243 C~~~~~p~~~~~W~~~~~~~~~~~~~~--~~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p--  313 (403)
T 3laf_A          243 CCVSGYPPPSFTWLRGEEVIQLRSKKY--SLLGGS-----NLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPP--  313 (403)
T ss_dssp             CEEEEESCCEEEEEETTEECCCSSSSE--EEETTT-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEE--
T ss_pred             EEcCCCCCCeEEEEECCeeccCCCceE--EECCcc-----EEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCC--
Confidence            999999999999999754333222222  223334     89999999999999999999999999999999887754  


Q ss_pred             eeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        277 IFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       277 ~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .+..    ..+..++...+.|.+.+.|.|.+.|..
T Consensus       314 ~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~  348 (403)
T 3laf_A          314 WFLNHPSNLYAYESMDIEFECAVSGKPVPTVNWMK  348 (403)
T ss_dssp             EEEECCCCEECCTTCCEEECCEEEEESCCEEEEEE
T ss_pred             cEeecCcceEEecCCeEEEEEEEeeccCCEEEEEE
Confidence            1211    123445556799999999999999954

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.97  E-value=6.8e-30  Score=227.16  Aligned_cols=275  Identities=14%  Similarity=0.127  Sum_probs=181.3

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEE---Eeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTIL---SIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~---~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +..+..+.+.+|+++.|.|.+.+.+.+.+.|+|++ +..+.   .... .......|+.... ....+.|.|.+++.+|+
T Consensus         4 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~~D~   82 (523)
T 2rcj_C            4 LTQPPSASGTPGQRVTISCTGTSSGSITVNWYQQLPGMAPKLLIYRDAMRPSGVPTRFSGSK-SGTSASLAISGLEAEDE   82 (523)
T ss_pred             cccCCceEEecCCcEEEEEEEeccCCceEEEEEeCCCCCcEEEEEeccccCcccCCcEEEec-CCCEEEEEECCCChhhC
Confidence            34566789999999999999988888999999964 22111   1000 0011234555332 22345899999999999


Q ss_pred             eEEEEEEecCCC----cceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEecccCCC--ceEEEcCCCceeec
Q psy15734        100 GWYMCQINTVPM----TSQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP--YVAWRREDGKAINY  169 (314)
Q Consensus       100 G~Y~C~~~~~~~----~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~~~W~~~~~~~~~~  169 (314)
                      |.|+|.+.+...    ......|.|.    .+|.+...+  ....+.+|+.+.|.|.+.|.|++  .+.|++ ++..+..
T Consensus        83 G~Y~C~a~n~~g~~~~~~~~~~l~V~~~~~~~P~~~~~~--~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~~  159 (523)
T 2rcj_C           83 SDYYCASWNSSDNSYVFGTGTKVTVLGQPKANPTVTLFP--PSSEELQANKATLVCLISDFYPGAVTVAWKA-DGSPVKA  159 (523)
T ss_pred             EEEEEEEccCCCccccccCceEEEeccCCCcCCeEEecC--CcccccCCCceEEEEEeccccCCceEEEEec-CCCCCCC
Confidence            999999976432    2244567773    456555433  33455679999999999988654  999999 6654421


Q ss_pred             C-----------Ce------eC-------------------------------------CCeEEcCCCcceeecCccEEE
Q psy15734        170 N-----------GE------LV-------------------------------------PPMLTIPNQLEGAFVSQTVEL  195 (314)
Q Consensus       170 ~-----------~~------~~-------------------------------------~p~~~~~~~~~~v~~g~~~~l  195 (314)
                      .           +.      +.                                     +|.+........+.+|+.+.|
T Consensus       160 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l  239 (523)
T 2rcj_C          160 GVETTKPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAAL  239 (523)
T ss_pred             ceEeccccccCCCCEEEEEEEEEechhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEE
Confidence            1           00      00                                     333332222335678999999


Q ss_pred             EEEEeec-CCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        196 HCHTEAF-PAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       196 ~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      .|.+.|. |.| .+.|++++....... ........+.|...+.|.|.++..+| |.|+|.|.|..|.......|.|...
T Consensus       240 ~C~~~g~~P~p~~v~W~k~g~~~~~~~-~~~~~~~~g~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~g~~~~~~~l~v~~~  317 (523)
T 2rcj_C          240 GCLVKDYFPQPVTVSWNSGALTSGVHT-FPAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPLSL  317 (523)
T ss_pred             EEEEeceeCCCeEEEEecCCcccceEe-CCcEecCCCcEEEEEEEEechhhcCC-ceEEEEEEeCCCCcceEEecCCCcC
Confidence            9999986 878 899999754422111 11111122335567799999999999 9999999999998877777766544


Q ss_pred             CCCeeEEE-E-----ccccccEeEEEEEeeccC----CCccceE
Q psy15734        274 DGDIFQIR-K-----MSRLHMGAYLCIASNGVV----PSVSHRI  307 (314)
Q Consensus       274 ~~~~~~~~-~-----~~~~~~g~~~C~a~~~~~----~~~~w~v  307 (314)
                      |  .+.+. .     +..++...+.|.+.+.++    +.+.|..
T Consensus       318 P--~~~~~~p~~~~~v~~g~~~~l~C~~~g~~p~~~~~~v~W~k  359 (523)
T 2rcj_C          318 P--SVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPQVKFNWYV  359 (523)
T ss_pred             c--eEEecCCCchhhcccCCceEEEEEEecccCCCCceEEEEEE
Confidence            2  22221 1     334555679999998654    3888953

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.97  E-value=6.2e-31  Score=226.28  Aligned_cols=270  Identities=22%  Similarity=0.339  Sum_probs=187.9

Q ss_pred             cCCCCCceec-CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEe---
Q psy15734         17 EKPDMPRFAE-PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR---   92 (314)
Q Consensus        17 ~~~~~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~---   92 (314)
                      .+..+|.|.. ++..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+.      ...+.++.+..   ..+.|.|.   
T Consensus        12 ~~~~~P~i~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~g-~~l~------~~~~~~~~~~~---~~~~l~i~~~~   81 (404)
T 3p3y_A           12 ELTQPPTITKQSAKDHIVDPRDNILIECEAKGNPAPSFHWTRNS-RFFN------IAKDPRVSMRR---RSGTLVIDFRS   81 (404)
T ss_dssp             -CCCCCCEEEECCTTCEECSSSCCCCCEEECCSSCCEEEEEETT-EECC------GGGCSSCBCCS---SSCCCBCCCTT
T ss_pred             hccCCCcccccCCccEEEcCCCCEEEEEEecCCCCCeEEEEECC-EEee------eecCCcceEec---CCceEEEEecc
Confidence            4457788875 577889999999999999999888999999954 3221      11122222211   11245554   


Q ss_pred             -eecCCCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceee
Q psy15734         93 -DVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        93 -~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~  168 (314)
                       +++.+|+|.|+|.+.+....  +..+.|.|..+|.+.... .....+.+|+.+.|.|.+ .+.|.+.+.|++.+...+.
T Consensus        82 ~~~~~~D~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~  160 (404)
T 3p3y_A           82 GGRPEEYEGEYQCFARNKFGTALSNRIRLQVSKSPLWPKEN-LDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPIT  160 (404)
T ss_dssp             TCCTTSSCEEEEEEEECSSCEEEEEEEEEEECCCCCCCCCC-CCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBCC
T ss_pred             CCCCccCCEEEEEEEEcCCCeEeeeeEEEEEeccCccccCC-CCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCccccC
Confidence             88899999999999875333  345677887777654432 344678899999999998 7789999999985433221


Q ss_pred             cC----------------------CeeC------------------------------CCeEEcCC---CcceeecCccE
Q psy15734        169 YN----------------------GELV------------------------------PPMLTIPN---QLEGAFVSQTV  193 (314)
Q Consensus       169 ~~----------------------~~~~------------------------------~p~~~~~~---~~~~v~~g~~~  193 (314)
                      ..                      +.+.                              +|.+..+.   ....+.+|+++
T Consensus       161 ~~~~~~~~~~~~l~i~~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v  240 (404)
T 3p3y_A          161 QDKRVSQGHNGDLYFSNVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDL  240 (404)
T ss_dssp             CCSSEEECTTSCEEESSCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCE
T ss_pred             CCCcEEEcCCCcEEEEeeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCE
Confidence            11                      1110                              11111111   23457899999


Q ss_pred             EEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        194 ELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       194 ~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      .|.|.+.|.|.|.+.|++++.... .... . ....+.     .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+
T Consensus       241 ~l~C~~~g~p~~~v~W~~~~~~~~-~~~~-~-~~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  312 (404)
T 3p3y_A          241 LLECIASGVPTPDIAWYKKGGDLP-SDKA-K-FENFNK-----ALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAA  312 (404)
T ss_dssp             EEECCBCCSSCCEEEEEETTBCCC-TTTE-E-EEGGGT-----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEE
T ss_pred             EEEEEECCCCCCcEEEEECCEECC-CCcc-c-ccccCc-----eEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCC
Confidence            999999999999999999754432 2221 1 112233     8999999999999999999999999989999988876


Q ss_pred             CCCeeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        274 DGDIFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       274 ~~~~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |  .+..    ..+..++...+.|.+.+.|.|.+.|..
T Consensus       313 p--~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~~  348 (404)
T 3p3y_A          313 P--YWLDEPKNLILAPGEDGRLVCRANGNPKPTVQWMV  348 (404)
T ss_dssp             E--EEEECCCCEEECTTCCEEEECEEEEESCCEEEEEE
T ss_pred             C--eeeccCCcceeecCCcEEEEEEccccCCCceEEEE
Confidence            4  2211    234455667799999999999999953

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=1.6e-29  Score=236.16  Aligned_cols=239  Identities=24%  Similarity=0.358  Sum_probs=175.5

Q ss_pred             CCceecC--CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEP--VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~--~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +|.+...  +....+.+|+++.|.|.+.+.|.+.+.|+|++......   .....+.++....     ++|.|.+++.+|
T Consensus       246 ~P~i~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v~W~k~~~~~~~~---~~~~~~~~~~~~~-----~~L~i~~v~~~D  317 (816)
T 3dmk_A          246 VPKVVSLAKFDMKTYSGSSTMALLCPAQGYPVPVFRWYKFIEGTTRK---QAVVLNDRVKQVS-----GTLIIKDAVVED  317 (816)
T ss_dssp             CCBCCGGGGEEEEEECTTSCEEECCCCBCSSCCEEEEEEECTTSSCE---EECCCSSSEEEET-----TEEEECSCCGGG
T ss_pred             CCccccccCccceEEeCCCeEEEEEEeeecCCCeEEEEeCCCCCccC---cceecCCceEecc-----ceEEECCCCHhH
Confidence            4555433  24678899999999999999999999999953321100   1112233433221     279999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC---
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV---  174 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~---  174 (314)
                      +|.|+|.+.|. +.......|.|..++.+...  +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.......   
T Consensus       318 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~--~~~~~v~~G~~v~l~C~~~g~p~~~v~W~k-~g~~~~~~~~~L~i~  394 (816)
T 3dmk_A          318 SGKYLCVVNNSVGGESVETVLTVTAPLSAKID--PPTQTVDFGRPAVFTCQYTGNPIKTVSWMK-DGKAIGHSESVLRIE  394 (816)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECEEEEEEEE--SSEEECCTTSCEEEEEEEEEECCCEEEEEE-TTEECSCCSSEEEES
T ss_pred             CEEEEEEEEcCCCceEEEEEEEEcCCCceeeC--CCceEecCCCCEEEEEEEeccCCCEEEEEE-CCEECCCCCCEEEEc
Confidence            99999999775 44455667777776665554  356778999999999999999999999999 666654332111   


Q ss_pred             ----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC
Q psy15734        175 ----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG  220 (314)
Q Consensus       175 ----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~  220 (314)
                                                        +|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+...
T Consensus       395 ~v~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~-g~~l~~~  473 (816)
T 3dmk_A          395 SVKKEDKGMYQCFVRNDRESAEASAELKLGGRFDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELD-GKKIANN  473 (816)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEEECCEEECCCSSCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEET-TEECCSC
T ss_pred             CCCHHHCEEEEEEEECCCCcEEEEEEEEEccccCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEEC-CEECCCC
Confidence                                              67777667777889999999999999999999999997 4444444


Q ss_pred             CceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        221 DDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       221 ~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .++..... .......+.|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       474 ~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  525 (816)
T 3dmk_A          474 DRYQVGQYVTVNGDVVSYLNITSVHANDGGLYKCIAKSKVGVAEHSAKLNVY  525 (816)
T ss_dssp             TTEEEEEEECTTSCEEEEEEESSCCTTTCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CCcccccEEecCCCcEEEEEEeeccccCCEEEEEEEEECCCeEEEEEEEEEe
Confidence            44433211 1112234589999999999999999999999988888888774

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.97  E-value=1.1e-29  Score=208.88  Aligned_cols=229  Identities=16%  Similarity=0.240  Sum_probs=168.9

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+    .+.|++++...             ... ...+   ..|.|.+++.+|
T Consensus        10 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~~----~i~W~~~~~~~-------------~~~-~~~~---~~L~i~~~~~~d   68 (290)
T 2o26_X           10 PSPPSIHPAQSELIVEAGDTLSLTCIDPD----FVRWTFKTYFN-------------EMV-ENKK---NEWIQEKAEATR   68 (290)
T ss_dssp             --CCEESSCSSEEEEETTSCEEEEEECTT----EEEEEEECSSS-------------CEE-EECS---SEEEETTCCGGG
T ss_pred             CCCCEEeCCCCeEEEcCCCcEEEEECCCC----cEEEecCCcce-------------eee-cCCC---ceEEEeccCHHh
Confidence            45688887888999999999999999987    89999966432             000 0111   379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCCceeecC-------
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDGKAINYN-------  170 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~~~~~~~-------  170 (314)
                      +|.|+|.+.+ + ....+.|.|..+|.....  +....+.+|+.+.|.|.+.+ |. +.+.|++.++..+...       
T Consensus        69 ~G~Y~C~~~n-g-~~~~~~l~V~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~~~~~~  143 (290)
T 2o26_X           69 TGTYTCSNSN-G-LTSSIYVFVRDPAKLFLV--GLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLTFVPNP  143 (290)
T ss_dssp             CEEEEEEESS-S-CEEEEEEEEECSSCCBCC--CCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCEEEEET
T ss_pred             CeEEEEEeeC-C-ccEEEEEEEeCCCccccc--ccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCceeeCC
Confidence            9999999987 3 367778888887776632  45677889999999999986 77 8999965466554321       


Q ss_pred             --------------C-eeC-------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCce-eEE
Q psy15734        171 --------------G-ELV-------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL-NYW  209 (314)
Q Consensus       171 --------------~-~~~-------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W  209 (314)
                                    + .+.                         +|.+...+....+.+|+++.|.|.+.|.|.|. +.|
T Consensus       144 ~~~L~i~~v~~~d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W  223 (290)
T 2o26_X          144 KAGITIKNVKRAYHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMW  223 (290)
T ss_dssp             TTEEEEESCCGGGTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEE
T ss_pred             CCCEEEecccHHHCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEE
Confidence                          1 111                         56676666667889999999999999999997 999


Q ss_pred             ecCCCee---eecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        210 TNEKGDM---IITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       210 ~~~~~~~---~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      ++++...   +......... ....+...+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|
T Consensus       224 ~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P  290 (290)
T 2o26_X          224 LKMNPQPQHIAQVKHNSWHR-GDFNYERQETLTISSARVDDSGVFMCYANNTFGSANVTTTLKVVEKG  290 (290)
T ss_dssp             EEESSSEEECCCEECCEEEE-ETTEEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             ecCCCCCccceeeccccccc-CceeeEEEEEEEEcCCCcccCeEEEEEEeCCCCcEEEEEEEEEEeCC
Confidence            9986552   1111111111 11112334699999999999999999999999999999988887653

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.97  E-value=2.1e-30  Score=222.40  Aligned_cols=270  Identities=16%  Similarity=0.205  Sum_probs=184.1

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      +..+|.|...+..+.+.+|+++.|.|.+.+ .+.+.+.|++++. .+..       ...++....   ..++|.|.+++.
T Consensus         3 v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~-~~~~-------~~~~~~~~~---~~~~L~i~~~~~   71 (395)
T 1bih_A            3 VDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-SYNW-------QEHNAALRK---DEGSLVFLRPQA   71 (395)
T ss_dssp             --CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSS-BCCT-------TTTTEEECT---TSCCEEESSCCG
T ss_pred             cCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceEEEEECCc-Cccc-------ccceEEEec---CCceEEEecCCC
Confidence            457899999999999999999999999988 7889999999543 2211       111222211   223799999999


Q ss_pred             CCCeEEEEEEecCCCc--ceeEEEEEEe--CCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCC--Cce---
Q psy15734         97 TDRGWYMCQINTVPMT--SQKGYLQVVV--PPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRRED--GKA---  166 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~--~~~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~--~~~---  166 (314)
                      +|+|.|+|.+.+....  +..+.|.|..  .|.+.    +....+.+|+.+.|.|.+ .+.|.+.+.|++.+  ..+   
T Consensus        72 ~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~p~~~----~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~~  147 (395)
T 1bih_A           72 SDEGHYQCFAETPAGVASSRVISFRKTYLIASPAK----THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNAD  147 (395)
T ss_dssp             GGCEEEEEEEEETTEEEECCCEEEEEEEEECCCCE----EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGC
T ss_pred             CCCcEEEEEEEeCCCeEEeEEEEEEEEEeecCCcC----CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCcccc
Confidence            9999999999765322  2234454433  34332    235567799999999996 78899999999943  011   


Q ss_pred             -------e--ec-------------CC---eeC--------C------C-----------------eEEcCCCcceeecC
Q psy15734        167 -------I--NY-------------NG---ELV--------P------P-----------------MLTIPNQLEGAFVS  190 (314)
Q Consensus       167 -------~--~~-------------~~---~~~--------~------p-----------------~~~~~~~~~~v~~g  190 (314)
                             .  ..             .+   .+.        .      .                 .....+....+.+|
T Consensus       148 ~~~~~~~~~~~~~~~L~i~~v~~~d~G~~~~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~G  227 (395)
T 1bih_A          148 VTDFDRRITAGPDGNLYFTIVTKEDVSDIYKYVCTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQYVSKDMMAKAG  227 (395)
T ss_dssp             CCCCCTTEEECTTSCEEEEEECGGGCCSSEEEEEEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEEECCSEEEETT
T ss_pred             cccccccEEEcCCCcEEEEEEeeccCCCceEEEEEEEecccceEEEeeeEEecccccccccccCCcCceecCCceEEECC
Confidence                   0  00             11   111        0      0                 00001345568899


Q ss_pred             ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee-EEEEE
Q psy15734        191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG-FIKVY  269 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~  269 (314)
                      +.+.|.|.+.|.|.|.+.|++++ ..+......++......  ..+.|.|.++..+|+|.|+|.|.|..|.... .+.|.
T Consensus       228 ~~v~l~C~~~g~p~~~i~W~~~g-~~~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~  304 (395)
T 1bih_A          228 DVTMIYCMYGSNPMGYPNYFKNG-KDVNGNPEDRITRHNRT--SGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLT  304 (395)
T ss_dssp             SCEEEEEEEECSSCCCCEEEETT-EECCCCTTSSEESCSSS--TTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEE
T ss_pred             CcEEEEEEeccCCCCeEEEEECC-EEcCCCCceeEEEEecC--CCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEE
Confidence            99999999999999999999975 33332222222111100  0128999999999999999999999998765 88888


Q ss_pred             EEecCCCeeEE-----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        270 VNLVDGDIFQI-----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       270 V~~~~~~~~~~-----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |..+|  .+..     ..+..++...+.|.+.+.|.|.+.|..
T Consensus       305 V~~~P--~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  345 (395)
T 1bih_A          305 VVSAP--KYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSH  345 (395)
T ss_dssp             EEEEE--EEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEE
T ss_pred             EEcCC--ccccCCCcceEecCCCeEEEEEEECcccCCeeEEEE
Confidence            88764  2222     234455666799999999999999963

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.97  E-value=3.6e-30  Score=220.44  Aligned_cols=265  Identities=17%  Similarity=0.233  Sum_probs=185.0

Q ss_pred             CCceecCCcc-eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC-
Q psy15734         21 MPRFAEPVAN-VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD-   98 (314)
Q Consensus        21 ~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d-   98 (314)
                      +|.|+..|.. +.+.+|+.+.|.|.+.+.|.+.+.|++.++..+..       .........    .++|.|.+++.+| 
T Consensus         3 ~P~f~~~p~~~~~~~~G~~v~l~C~~~g~p~p~v~W~k~~g~~~~~-------~~~~~~~~~----~~~L~i~~~~~~d~   71 (388)
T 2v5m_A            3 GPVFLKEPTNRIDFSNSTGAEIECKASGNPMPEIIWIRSDGTAVGD-------VPGLRQISS----DGKLVFPPFRAEDY   71 (388)
T ss_dssp             EEEEEECCCSEEEEETTTCEEEECEEEEESCCEEEEEETTSCBCCC-------BTTTBEECS----TTEEEECCCCGGGC
T ss_pred             CCchhhCCCceEEEEcCccEEEEEECCCCCCCEEEEEcCCCCcccc-------CCCceEEcC----CceEEecccChhhc
Confidence            5788877654 67889999999999998888999999955543321       111111111    1379999999997 


Q ss_pred             -----CeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC---CceEEEcCCCceee
Q psy15734         99 -----RGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE---PYVAWRREDGKAIN  168 (314)
Q Consensus        99 -----~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---p~~~W~~~~~~~~~  168 (314)
                           +|.|+|.+.+....  +..+.|.+..+|.+....  ....+.+|+.+.|.|.+.+.+.   +.+.|++. +..+.
T Consensus        72 ~~~~d~G~Y~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~--~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~-~~~~~  148 (388)
T 2v5m_A           72 RQEVHAQVYACLARNQFGSIISRDVHVRAVVAQYYEADV--NKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTD-EEENY  148 (388)
T ss_dssp             CHHHHEEEEEEEEEETTEEEECCCEEEEEECCCCCCCBC--CCEEEETTSCEEECCBCCTTTTTTEEEEEEEET-TCCEE
T ss_pred             cccccCceEEEEEEccCCeEEecceEEEEccccccccCc--cceeeecCCcEEEEEECcCCCCCCcceEEEEeC-CCccc
Confidence                 99999999875332  445677777777665443  4567889999999999987643   68999994 43321


Q ss_pred             c-------------C--------------CeeC-------------C---CeEEc--------------CCCcceeecCc
Q psy15734        169 Y-------------N--------------GELV-------------P---PMLTI--------------PNQLEGAFVSQ  191 (314)
Q Consensus       169 ~-------------~--------------~~~~-------------~---p~~~~--------------~~~~~~v~~g~  191 (314)
                      .             +              +.+.             .   ..+.+              ......+.+|+
T Consensus       149 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~~~~~~~v~~G~  228 (388)
T 2v5m_A          149 FPGAEYDGKYLVLPSGELHIREVGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPALVQKPLELMVAH  228 (388)
T ss_dssp             CSSSCBTTTEEECTTSCEEESSCCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSSCCCCEEEETTS
T ss_pred             ccccCCCCcEEEccCCcEEEecCCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccccCCceEEeeCC
Confidence            1             0              1110             0   01110              11334578899


Q ss_pred             cEEEEEEEeecCCceeEEecCCCeee-----ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        192 TVELHCHTEAFPASLNYWTNEKGDMI-----ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       192 ~~~l~C~~~g~p~p~~~W~~~~~~~~-----~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ++.|.|.+.|.|.|.+.|++++....     ....++   ...++     .|.|.++..+|+|.|+|.|.|..|.....+
T Consensus       229 ~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~---~~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~  300 (388)
T 2v5m_A          229 TISLLCPAQGFPAPSFRWYKFIEGTTRKQAVVLNDRV---KQVSG-----TLIIKDAVVEDSGKYLCVVNNSVGGESVET  300 (388)
T ss_dssp             CEEECCCCEEESCCEEEEEEECTTSSCEEECCCSSSE---EEETT-----EEEESSCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             cEEEEEECCCCCCCEEEEEecCCCCcccccccccCce---ecccC-----EEEECcCCHHHCeEEEEEEecCCCceeEEE
Confidence            99999999999999999999643211     111111   12233     899999999999999999999999988899


Q ss_pred             EEEEEecCCCeeEE--EEccccccEeEEEEEeeccCCCccceE
Q psy15734        267 KVYVNLVDGDIFQI--RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       267 ~l~V~~~~~~~~~~--~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|.|..++...+..  ..+..++...+.|.+.+.|.|.+.|..
T Consensus       301 ~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~  343 (388)
T 2v5m_A          301 VLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTVSWMK  343 (388)
T ss_dssp             EEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEEEEEE
T ss_pred             EEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeEEEEE
Confidence            99888764321111  234455666799999999999999963

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=99.97  E-value=1.9e-29  Score=235.65  Aligned_cols=272  Identities=21%  Similarity=0.304  Sum_probs=195.8

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEE----eCCceeEEEEEeee
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT----FNDHRSWFLHLRDV   94 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~   94 (314)
                      ..+|.+...+....+.+|+.+.|.|.+.+.|.+.+.|++++ ..+        ..+.++...    .++.....|.|.++
T Consensus       427 ~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~g-~~l--------~~~~~~~~~~~~~~~~~~~~~L~i~~v  497 (816)
T 3dmk_A          427 FDPPVIRQAFQEETMEPGPSVFLKCVAGGNPTPEISWELDG-KKI--------ANNDRYQVGQYVTVNGDVVSYLNITSV  497 (816)
T ss_dssp             SCCCEEEEECCCEEECSSSCEEEEEEEECSSCCEEEEEETT-EEC--------CSCTTEEEEEEECTTSCEEEEEEESSC
T ss_pred             cCCCceEecCcceEEcCCCCEEEEEEEecCCCCEEEEEECC-EEC--------CCCCCcccccEEecCCCcEEEEEEeec
Confidence            46777877788889999999999999999999999999954 322        122232221    12222347999999


Q ss_pred             cCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC--
Q psy15734         95 QETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG--  171 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~--  171 (314)
                      +.+|+|.|+|.+.|. +.......|.|..+|.+..   .....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+....  
T Consensus       498 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~---~~~~~v~~G~~v~l~C~~~g~p~~~i~W~k-~~~~l~~~~~~  573 (816)
T 3dmk_A          498 HANDGGLYKCIAKSKVGVAEHSAKLNVYGLPYIRQ---MEKKAIVAGETLIVTCPVAGYPIDSIVWER-DNRALPINRKQ  573 (816)
T ss_dssp             CTTTCEEEEEEEEETTEEEEEEEEEEECSSCEECC---CCCEEEETTCCEEEECCEECSSEEEEEEEE-TTEESCCSTTE
T ss_pred             cccCCEEEEEEEEECCCeEEEEEEEEEecCCeeEc---cCCeEEecCCeEEEEEEecCCCCCEEEEEE-CCeEcccCCce
Confidence            999999999999775 4556677888888886543   345678899999999999999999999999 555443221  


Q ss_pred             ------eeC-----------------------------------CCeEE-cCCCcceeecCccEEEEEEEeecCCc-eeE
Q psy15734        172 ------ELV-----------------------------------PPMLT-IPNQLEGAFVSQTVELHCHTEAFPAS-LNY  208 (314)
Q Consensus       172 ------~~~-----------------------------------~p~~~-~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~  208 (314)
                            .+.                                   +|.+. .......+.+|+++.|.|.+.+.|+| .+.
T Consensus       574 ~~~~~~~l~i~~v~~~~d~G~Y~C~a~n~~g~~~~~~~~v~v~~~p~~~~~~~~~~~~~~G~~v~L~C~~~~~~~~~~i~  653 (816)
T 3dmk_A          574 KVFPNGTLIIENVERNSDQATYTCVAKNQEGYSARGSLEVQVMVLPRIIPFAFEEGPAQVGQYLTLHCSVPGGDLPLNID  653 (816)
T ss_dssp             EECTTSEEEESSCCHHHHCEEEEEEEEESSSCEEEEEEEEEEECCCCCBCCCCCSSCEESSCEEEEEEBCCCSSSCCEEE
T ss_pred             EEecCCeEEEEecCccccCEEEEEEEEECCCceeeeeEEEEEecCCccccccccccccCCCCeEEEEEEEeCCCCCCEEE
Confidence                  100                                   22221 22344568899999999999876655 899


Q ss_pred             EecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE--EEcccc
Q psy15734        209 WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI--RKMSRL  286 (314)
Q Consensus       209 W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~--~~~~~~  286 (314)
                      |++++. .+.....+.......   ..+.|.|.++..+|+|.|+|.|.|..|....++.|.|..+|.-....  ..+..+
T Consensus       654 W~~~g~-~l~~~~~~~~~~~~~---~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G  729 (816)
T 3dmk_A          654 WTLDGQ-AISEDLGITTSRVGR---RGSVLTIEAVEASHAGNFTCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQG  729 (816)
T ss_dssp             EEETTB-CCCGGGTCEEEEETT---TEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETT
T ss_pred             EEECCe-EcCCCCCeeEEEcCC---CeeEEEEccCChhhCEEEEEEEEeCCccEEEEEEEEEEeCCceeeecccceecCC
Confidence            999744 333333333322222   13589999999999999999999999999999999988764211111  123345


Q ss_pred             ccEeEEEEEeeccCCCccceE
Q psy15734        287 HMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       287 ~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      +...+.|.+.+.|.|.+.|..
T Consensus       730 ~~v~l~C~~~g~P~p~i~W~k  750 (816)
T 3dmk_A          730 SDAKVECKADGFPKPQVTWKK  750 (816)
T ss_dssp             CCEEEECEEEEESCCEEECCE
T ss_pred             CcEEEEEEEecCCCCeEEEEe
Confidence            566799999999999999965

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.97  E-value=4.5e-30  Score=219.41  Aligned_cols=263  Identities=18%  Similarity=0.202  Sum_probs=187.3

Q ss_pred             CCCceecCCcceEE---EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         20 DMPRFAEPVANVTA---TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        20 ~~p~~~~~~~~~~v---~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+|.|...|....+   .+|+++.|.|.+.+.|.+.+.|++++ ..+.      ...+.++.+..     +.|.|.++..
T Consensus         3 ~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~k~g-~~~~------~~~~~~~~~~~-----~~L~i~~~~~   70 (382)
T 1cs6_A            3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNG-TELK------MGPDSRYRLVA-----GDLVISNPVK   70 (382)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETT-EECC------CSTTSSEEEET-----TEEEEESCCH
T ss_pred             CCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEEEEEECC-EECC------cCCCccEEeeC-----CeEEEecccc
Confidence            36888888888877   78999999999998888999999954 3321      11234554432     2799999986


Q ss_pred             -CCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceee--cC
Q psy15734         97 -TDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAIN--YN  170 (314)
Q Consensus        97 -~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~--~~  170 (314)
                       +|+|.|+|.+.+....  +....|.|...+.+.... .....+.+|+.+.|.|.+ .+.|.+.+.|++ ++.++.  ..
T Consensus        71 ~~D~G~Y~C~a~n~~g~~~s~~~~l~v~~~~~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~-~~~~~~~~~~  148 (382)
T 1cs6_A           71 AKDAGSYQCVATNARGTVVSREASLRFGFLQEFSAEE-RDPVKITEGWGVMFTCSPPPHYPALSYRWLL-NEFPNFIPAD  148 (382)
T ss_dssp             HHHCEEEEEEEEETTEEEECCCEEEEEEEECCCCSSC-CCCEEEETTSCEEECCCCCSEESCCEEEEEE-SSTTCBCCCC
T ss_pred             cccCEEEEEEEEcCCcEEEecceEEEeeccccccccC-CCceEEecCCcEEEEeCCCCCCCCcEEEEEE-CCCccccccC
Confidence             9999999999775322  334667776655544332 356678999999999996 456889999998 443321  00


Q ss_pred             ---------CeeC--------------------------------------------CCeEEc-CCCcceeecCccEEEE
Q psy15734        171 ---------GELV--------------------------------------------PPMLTI-PNQLEGAFVSQTVELH  196 (314)
Q Consensus       171 ---------~~~~--------------------------------------------~p~~~~-~~~~~~v~~g~~~~l~  196 (314)
                               +.+.                                            +|.+.. .+....+.+|+++.|.
T Consensus       149 ~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~~~~~~~~~~G~~v~l~  228 (382)
T 1cs6_A          149 GRRFVSQTTGNLYIAKTEASDLGNYSCFATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAKFPADTYALTGQMVTLE  228 (382)
T ss_dssp             SSEEECTTTCCEEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEECCCSEEEEETTCCEEEE
T ss_pred             ceEEEecCceEEEEEeeCcccCeeEEEEEEEccccccceeEccceeeccchhhcccCCCceeccCCCceEEeCCCeEEEE
Confidence                     0000                                            122222 2345678899999999


Q ss_pred             EEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        197 CHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       197 C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.+.|.|.|.+.|+++++....   ..   ...+.     .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.-
T Consensus       229 C~~~g~p~~~i~W~~~~~~~~~---~~---~~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  297 (382)
T 1cs6_A          229 CFAFGNPVPQIKWRKLDGSQTS---KW---LSSEP-----LLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDW  297 (382)
T ss_dssp             CEEEEESCCEEEEEECCSCCSC---CC---SBSSS-----EEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEE
T ss_pred             EEEccCCCCEEEEEECCccccc---EE---ecCCc-----EEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCc
Confidence            9999999999999997654221   10   11222     8999999999999999999999999888888888765421


Q ss_pred             eeE--EEEccccccEeEEEEEeeccCCCccceE
Q psy15734        277 IFQ--IRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       277 ~~~--~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      ...  ...+..++...+.|.+.+.|.|.+.|..
T Consensus       298 ~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  330 (382)
T 1cs6_A          298 LDVITDTEADIGSDLRWSCVASGKPRPAVRWLR  330 (382)
T ss_dssp             EECCCCEEEETTCCEEEECEEEEESCCEEEEEE
T ss_pred             ccCCCccEEcCCCeEEEEEEeeeecCCEEEEEE
Confidence            110  1233445566799999999999999953

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=99.97  E-value=1.1e-29  Score=218.34  Aligned_cols=240  Identities=23%  Similarity=0.422  Sum_probs=180.0

Q ss_pred             eccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         15 KCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        15 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+.+..+|.+...+....+.+|+++.|.|.+.+.+.+.+.|++++.. +..     .....+......    +.|.|.++
T Consensus       115 ~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~~-----~~~~~~~~~~~~----~~L~i~~~  184 (403)
T 3laf_A          115 KVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTIHWQKNQQD-LNP-----IPGDSRVVVLPS----GALQISRL  184 (403)
T ss_dssp             EEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEEEEEESSSB-CCC-----CTTCCSEEECTT----SCEEECSC
T ss_pred             EEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeEEEEECCEe-ccc-----cCCceEEEEcCC----ceEEEccc
Confidence            33445678888888899999999999999998888889999996543 210     112223332222    26999999


Q ss_pred             cCCCCeEEEEEEecCCC--cceeEEEEEEeCCcee----eecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceee
Q psy15734         95 QETDRGWYMCQINTVPM--TSQKGYLQVVVPPRIL----LDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~~~----~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~  168 (314)
                      +.+|+|.|+|.+.+...  ......+.|...|...    ....+....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+.
T Consensus       185 ~~~d~G~Y~C~~~n~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~~~~~W~~-~~~~~~  263 (403)
T 3laf_A          185 QPGDSGVYRCSARNPASTRTGNEAEVRILSDPGLHRQLYFLQRPSNVIAIEGKDAVLECCVSGYPPPSFTWLR-GEEVIQ  263 (403)
T ss_dssp             CGGGCEEEEEEEECSSCCCBCCCEEEEEECCCCCCEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEE-TTEECC
T ss_pred             ccccCEEEEEEEEcCCCceeccceeEEEecCCCcccCceEecCCCceEecCCCcEEEEEEcCCCCCCeEEEEE-CCeecc
Confidence            99999999999976532  3345677887766432    1223456678899999999999999999999999 555443


Q ss_pred             cCCe---------eC---------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCce
Q psy15734        169 YNGE---------LV---------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL  206 (314)
Q Consensus       169 ~~~~---------~~---------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~  206 (314)
                      ....         +.                                 +|.+...+....+.+|+++.|.|.+.|.|.|.
T Consensus       264 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~  343 (403)
T 3laf_A          264 LRSKKYSLLGGSNLLISNVTDDDSGTYTCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPT  343 (403)
T ss_dssp             CSSSSEEEETTTEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCE
T ss_pred             CCCceEEECCccEEEEeCCCHHHCEEEEEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCE
Confidence            2111         10                                 67777777778889999999999999999999


Q ss_pred             eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        207 NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       207 ~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      +.|++++ ..+.....+.+  ..+.     .|.|.++..+|+|.|+|.|.|..|....++.|.|..+
T Consensus       344 v~W~~~g-~~~~~~~~~~~--~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~P  402 (403)
T 3laf_A          344 VNWMKNG-DVVIPSDYFQI--VGGS-----NLRILGVVKSDEGFYQCVAENEAGNAQSSAQLIVPKP  402 (403)
T ss_dssp             EEEEETT-EECCCSSSEEE--ETTT-----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEECCCC
T ss_pred             EEEEECC-EECCCCCcEEE--ecCc-----cEEEeccccccCEEEEEEEEcCCceEEEEEEEEEeCC
Confidence            9999974 44444443332  2333     8999999999999999999999999999999988654

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=1.6e-28  Score=223.56  Aligned_cols=258  Identities=19%  Similarity=0.226  Sum_probs=184.6

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .......+..|+.+.|.|.+.+.+ +.+.|++++. .+        ..+.++.+...+   ..|.|.+++.+|+|.|+|.
T Consensus       294 ~~~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~-~l--------~~~~~~~~~~~~---~~L~i~~~~~~d~G~Y~C~  360 (642)
T 1e07_A          294 TSNNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQ-SL--------PVSPRLQLSNDN---RTLTLLSVTRNDVGPYECG  360 (642)
T ss_pred             EcCCceeEecCCcEEEEEECCCCC-ccEEEEECCc-cC--------CCcCCEEEeCCC---CEEEEeccCcccCeeEEEE
Confidence            334445566688899999998865 6999999543 22        223344443221   3799999999999999999


Q ss_pred             EecCCC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC---------
Q psy15734        106 INTVPM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV---------  174 (314)
Q Consensus       106 ~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~---------  174 (314)
                      +.|...  .+..+.|.|..+|...... +....+.+|+.+.|.|.+.|.|.|.+.|++ ++..+.....+.         
T Consensus       361 a~n~~g~~~s~~~~l~V~~~p~~~~~~-~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~~~~~~~L~i~~~~~~d~  438 (642)
T 1e07_A          361 IQNELSVDHSDPVILNVLYGPDDPTIS-PSYTYYRPGVNLSLSCHAASNPPAQYSWLI-DGNIQQHTQELFISNITEKNS  438 (642)
T ss_pred             EeCCCCCcceeeEEEEEEcCCCCCeec-CCceEecCCCcEEEEEEcCccCCCeEEEEE-CCEEcCCCceEEEccCChhhC
Confidence            977533  2445778888777654332 345678899999999999999999999999 666654332221         


Q ss_pred             -----------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceee
Q psy15734        175 -----------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED  225 (314)
Q Consensus       175 -----------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~  225 (314)
                                                   +|.+.. .....+.+|+++.|.|.+.+ |.+.+.|+++ +..+....++.+
T Consensus       439 G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~v~~g~~v~l~C~~~~-~~~~i~W~~~-g~~l~~~~~~~~  515 (642)
T 1e07_A          439 GLYTCQANNSASGHSRTTVKTITVSAELPKPSISS-NNSKPVEDKDAVAFTCEPEA-QNTTYLWWVN-GQSLPVSPRLQL  515 (642)
T ss_pred             eEEEEEEEcCCCCCcccceEEEEEeccCCCceEec-CCceeecCCCeEEEEEECCC-CCcEEEEEEC-CEeCCCCCcEEE
Confidence                                         222222 23355779999999999994 8899999997 444444444433


Q ss_pred             eEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce-eEEEEEEEecCCCeeEE---EEccccccEeEEEEEeeccCC
Q psy15734        226 SRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD-GFIKVYVNLVDGDIFQI---RKMSRLHMGAYLCIASNGVVP  301 (314)
Q Consensus       226 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~---~~~~~~~~g~~~C~a~~~~~~  301 (314)
                      .. .+     ..|.|.++..+|+|.|+|.|.|..|... ..+.|.|...|..+...   ..+..++...+.|.+.+.|+|
T Consensus       516 ~~-~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p  589 (642)
T 1e07_A          516 SN-GN-----RTLTLFNVTRNDARAYVCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSP  589 (642)
T ss_pred             cC-CC-----cEEEEeecChhcCceEEEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCC
Confidence            21 22     3999999999999999999999999764 46888888765433322   223345556799999999999


Q ss_pred             CccceE
Q psy15734        302 SVSHRI  307 (314)
Q Consensus       302 ~~~w~v  307 (314)
                      .+.|..
T Consensus       590 ~v~W~~  595 (642)
T 1e07_A          590 QYSWRI  595 (642)
T ss_pred             eEEEEE
Confidence            999964

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.97  E-value=2.5e-30  Score=214.54  Aligned_cols=235  Identities=19%  Similarity=0.300  Sum_probs=163.2

Q ss_pred             ceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeee------e--eecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         30 NVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHK------V--VTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~------~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .+++.+|++++|.|.+.+ .+.+.+.|+|.++.........      .  .....|+.+.......++|.|.+++.+|+|
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~v~~~D~G   87 (308)
T 4fom_A            8 HVTAVWGKNVSLKCLIEVNETITQISWEKIHGKSSQTVAVHHPQYGFSVQGEYQGRVLFKNYSLNDATITLHNIGFSDSG   87 (308)
T ss_dssp             SCEEETTSCEEECCBCCCSSCEEEEEEEEESSSCEEEEEEECSSSCEEECTTTTTTEEESCCSSSBCCEEECSCCGGGCE
T ss_pred             EeEEEcCCcEEEEEEecCCCCCcEEEEEECCCCCCceEEEecCCCCceecCcccceEEeeccCCCceEEEEccCCHHHCE
Confidence            578999999999999865 4556899999654322111000      0  011345554433334457999999999999


Q ss_pred             EEEEEEecCC--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCCee----
Q psy15734        101 WYMCQINTVP--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGEL----  173 (314)
Q Consensus       101 ~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~~~----  173 (314)
                      .|+|.+.+..  .......+.+...|.......+.......|+.+.|.|.+ .+.|.|.+.|++ ++..+......    
T Consensus        88 ~Y~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~-~~~~~~~~~~~~~~~  166 (308)
T 4fom_A           88 KYICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHIDWEG-DLGEMESTTTSFPNE  166 (308)
T ss_dssp             EEEEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEEEECC-CSSBCCEEEEECTTS
T ss_pred             EEEEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceEEEEE-CCcccccccceeeee
Confidence            9999997653  334556677777777655444555556678899999975 578999999998 55443211100    


Q ss_pred             --------C-----------------------------------CCeEEcC-CCcceeecCccEEEEEEEeecCCc-eeE
Q psy15734        174 --------V-----------------------------------PPMLTIP-NQLEGAFVSQTVELHCHTEAFPAS-LNY  208 (314)
Q Consensus       174 --------~-----------------------------------~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p-~~~  208 (314)
                              .                                   +|.+... .....+..|+++.|.|.+.|.|+| .+.
T Consensus       167 ~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~  246 (308)
T 4fom_A          167 TATIISQYKLFPTRFARGRRITCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSV  246 (308)
T ss_dssp             CEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEE
T ss_pred             cccccccceEEeeeecCCccEEEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEE
Confidence                    0                                   4444433 334456678999999999999998 689


Q ss_pred             EecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        209 WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       209 W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |+++++.+.. ...     ..++    ..|.|.++..+|+|.|+|.|.|..|..+.++.|.|..+|.
T Consensus       247 W~k~~~~~~~-~~~-----~~~~----~~l~i~~v~~~d~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  303 (308)
T 4fom_A          247 WSRLDGQWPD-GLL-----ASDN----TLHFVHPLTFNYSGVYICKVTNSLGQRSDQKVIYISDPPH  303 (308)
T ss_dssp             CCBSSSCCCS-SCB-----CSTT----EEECCSCCCSCCCSEEEEEEEETTEEEEEEEECCEECCC-
T ss_pred             EEECCeECCC-cEE-----EcCC----eEEEECCCChhhCEEEEEEEEeCCCcEEEEEEEEEEcCCC
Confidence            9997654321 110     1122    2677889999999999999999999999999999988764

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.97  E-value=3.2e-29  Score=221.91  Aligned_cols=257  Identities=14%  Similarity=0.137  Sum_probs=165.6

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ..+.|.+|++++|.|.+.+.+...+.|++++.. +...  ..+..+.+        ...+|.|.+++.+|+|.|+|.+.+
T Consensus        56 ~~~~v~~g~~~~L~c~~~~~~~~~~~W~~~~~~-l~~~--~~~~~~~r--------~~~SL~I~~v~~~D~G~Y~C~~~n  124 (527)
T 3qs9_E           56 AAVEVDVSASITLQVLVDAPGNISCLWVFKHSS-LNCQ--PHFDLQNR--------GVVSMVILKMTETQAGEYLLFIQS  124 (527)
T ss_dssp             CEEEECSSCCEEEEEECSCCSSCEEEEEETTEE-ECCC--CBC-------------CEEEEEESSCCSSSCSEEEEEEEC
T ss_pred             eeEEEeccccEEEEEEEecCCceeEEEEecCCc-cCcc--cccCCCcc--------eEEEEEECcCChhhCeeEEEEEEe
Confidence            389999999999999999888899999996432 1110  00111111        123699999999999999999976


Q ss_pred             CCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec-------------------
Q psy15734        109 VPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-------------------  169 (314)
Q Consensus       109 ~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~-------------------  169 (314)
                      .. ......+.|.+.|.....+ ........++.+.|.|.+.|+|.|.+.|++.+ ..+..                   
T Consensus       125 ~~-~~~~~~~~v~v~~~~~~~~-~~p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~  201 (527)
T 3qs9_E          125 EA-TNYTILFTVSIRNTLLYTL-RRPYFRKMENQDALVCISESVPEPIVEWVLCD-SQGESCKEESPAVVKKEEKVLHEL  201 (527)
T ss_dssp             ---CEEEEEEEEEEC-----CE-EEEEEEECSSSSCEEEEEEESSCCEEEEEEC--------------CEEECCSEECCC
T ss_pred             cc-ccEEEEEEEEECCceeecc-CCCcEEecCCceEEEEEEceecCCeEEEEECC-CCCccccccCCcEEEEeeeecccc
Confidence            42 3334445555544432211 12223455777889999999999999999843 22210                   


Q ss_pred             -CCeeC---------------------CCeEEcCCCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeee
Q psy15734        170 -NGELV---------------------PPMLTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDS  226 (314)
Q Consensus       170 -~~~~~---------------------~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~  226 (314)
                       .+.+.                     +|.+  ++....+.+|+++.|.|.+. |.|.|.+.|++++.. +.....+...
T Consensus       202 d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k~g~~-l~~~~~~~~~  278 (527)
T 3qs9_E          202 FGTDIRCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWELENKA-LEEGNYFEMS  278 (527)
T ss_dssp             CSSCEEEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCEEEECSSSC-CCGGGEEEEE
T ss_pred             CCEEEEEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEEEEEECCEE-CCCCceeeee
Confidence             00000                     2222  45567788999999999996 899999999997543 3222222221


Q ss_pred             Eee-CC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE------EEccccccEeEEEEEeec
Q psy15734        227 RLI-NG-YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI------RKMSRLHMGAYLCIASNG  298 (314)
Q Consensus       227 ~~~-~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~------~~~~~~~~g~~~C~a~~~  298 (314)
                      ... +. .....+|.|.++..+|+|.|+|.|.|.   ....+.|.|..++  .+.+      ..+..++...+.|.+.+.
T Consensus       279 ~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~a~N~---~~~~~~L~V~~~p--~i~~~~~~~~~~v~~G~~v~L~C~~~g~  353 (527)
T 3qs9_E          279 TYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKH---PSQSALVTIVEKG--FINATNSSEDYEIDQYEEFCFSVRFKAY  353 (527)
T ss_dssp             EEETTTEEEEEEEEEESSCCGGGCEEEEEEETTE---EEEEEEEEEC--C--EEECCCSCCEECCCTTCCCCEEEEEEEE
T ss_pred             eeccCcceeeEEEEEEccCCcccCeEEEEEEEeC---CCceEEEEEEccC--ccccccCcccEEEcCCCeEEEEEEEEec
Confidence            111 11 223457999999999999999999998   5667777776543  2221      223344555699999999


Q ss_pred             cCCCccceE
Q psy15734        299 VVPSVSHRI  307 (314)
Q Consensus       299 ~~~~~~w~v  307 (314)
                      |.|.+.|..
T Consensus       354 P~p~i~W~k  362 (527)
T 3qs9_E          354 PQIRCTWTF  362 (527)
T ss_dssp             SCCEEEEEE
T ss_pred             CCCEEEEEE
Confidence            999999963

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.97  E-value=2.3e-30  Score=215.53  Aligned_cols=235  Identities=17%  Similarity=0.242  Sum_probs=160.2

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..+|.|..+. .+.+.+|+++.|.|.+.+. +.+.+.|++++ ..+        ..+.++.+..   ....|.|.+++.+
T Consensus         5 ~~~P~~~~~~-~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~-~~~--------~~~~~~~~~~---~~~~L~i~~~~~~   71 (317)
T 2y25_A            5 FTGPHFVEYL-SWEVTGECNVLLKCKVANIKKETHIVWYKDE-REI--------SVDEKHDFKD---GICTLLITEFSKK   71 (317)
T ss_dssp             SSCCEEEEEE-EEEEETTTEEEEEEEEESCCTTCEEEEEETT-EEE--------CCSCC--------CCEEEEETTCCST
T ss_pred             cCCCcEeeee-eEEECCCCeEEEEEEEcCCCCCCEEEEEECC-eEc--------CCCCcEEEEC---CeEEEEEccCCcc
Confidence            4578888665 5899999999999999886 77899999954 332        2223333321   2248999999999


Q ss_pred             CCeEEEEEEecCCC-cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc----------cCCCceEEEcCCCce
Q psy15734         98 DRGWYMCQINTVPM-TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG----------YPEPYVAWRREDGKA  166 (314)
Q Consensus        98 d~G~Y~C~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~----------~p~p~~~W~~~~~~~  166 (314)
                      |+|.|+|.+.+... ....+.|.|..+|.+...  +....+..|+.+.|.|.+.+          .|.+.+.|++ ++..
T Consensus        72 d~G~Y~C~~~n~~g~~~~~~~l~v~~~~~~~~~--~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~-~~~~  148 (317)
T 2y25_A           72 DAGIYEVILKDDRGKDKSRLKLVDEAFKELMME--VCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSH-NGSA  148 (317)
T ss_dssp             TCSCEEEEEESSSCEEEEEECCSTHHHHHHHHH--HHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEE-SSSB
T ss_pred             cCeEEEEEEECCCCcEEEEEEEEEecCcccccc--CCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEE-CCEE
Confidence            99999999976532 223333333333322211  12233445666777776665          6889999999 5555


Q ss_pred             eecCCeeC----------------------------------------------------------------CCeE-EcC
Q psy15734        167 INYNGELV----------------------------------------------------------------PPML-TIP  181 (314)
Q Consensus       167 ~~~~~~~~----------------------------------------------------------------~p~~-~~~  181 (314)
                      +.......                                                                +|.+ ...
T Consensus       149 ~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~  228 (317)
T 2y25_A          149 IRYSDRVKTGVTGEQIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGL  228 (317)
T ss_dssp             CCCCSSEEEEECSSEEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBC
T ss_pred             CCCCCCeEEeccCCEEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccC
Confidence            43221110                                                                1222 223


Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      +....+.+|+++.|.|.+.|.|.|.+.|++++ ..+....++.+....+.   .+.|.|.++..+|+|.|+|.|.|..|.
T Consensus       229 ~~~~~v~~g~~~~l~C~~~g~p~p~i~W~~~g-~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~a~N~~g~  304 (317)
T 2y25_A          229 PDVVTIQEGKALNLTCNVWGDPPPEVSWLKNE-KALASDDHCNLKFEAGR---TAYFTINGVSTADSGKYGLVVKNKYGS  304 (317)
T ss_dssp             CSEEEEETTSBBCEEEEEECSSCCEEEEEESS-SEECCCSSEEECCBTTT---EEEEEEBSCCSTTCEEEEEEEEETTEE
T ss_pred             CccEEEEcCCEEEEEEEEecCCCCEEEEEECC-EeCCCCCcEEEEEcCCC---EEEEEECCCCHHHCEEEEEEEEeCCCe
Confidence            45568899999999999999999999999974 44444444444322122   359999999999999999999999999


Q ss_pred             ceeEEEEEEEec
Q psy15734        262 TDGFIKVYVNLV  273 (314)
Q Consensus       262 ~~~~~~l~V~~~  273 (314)
                      ....+.|.|..+
T Consensus       305 ~~~~~~l~V~~P  316 (317)
T 2y25_A          305 ETSDFTVSVFIP  316 (317)
T ss_dssp             EEEEEEEEEECC
T ss_pred             EEEEEEEEEEcC
Confidence            999999988754

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=99.97  E-value=3.6e-28  Score=221.22  Aligned_cols=262  Identities=19%  Similarity=0.228  Sum_probs=184.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|.+.. .....+.+|+.+.|.|.+.+ +.+.+.|++++ ..+        ..+.++.+...   ...|.|.+++.+|+|
T Consensus       112 ~p~i~~-~~~~~v~~g~~v~l~C~~~~-p~~~v~W~~~g-~~l--------~~~~~~~~~~~---~~~L~i~~~~~~d~G  177 (642)
T 1e07_A          112 KPSISS-NNSKPVEDKDAVAFTCEPET-QDATYLWWVNN-QSL--------PVSPRLQLSNG---NRTLTLFNVTRNDTA  177 (642)
T ss_pred             CCcEEc-cCceeEecCCcEEEEEECCC-CCeeEEEEECC-eEC--------CCCCceEEcCC---CCEEEEeCCCcccCe
Confidence            455443 33566889999999999988 88999999954 322        22334444322   237999999999999


Q ss_pred             EEEEEEecCCC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC----
Q psy15734        101 WYMCQINTVPM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV----  174 (314)
Q Consensus       101 ~Y~C~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~----  174 (314)
                      .|+|.+.+...  .+..+.|.|..+|...... +....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+.....+.    
T Consensus       178 ~Y~C~a~n~~~~~~s~~~~l~V~~~p~~~~~~-~~~~~~~~G~~~~l~C~~~g~p~~~i~W~~-~g~~i~~~~~L~i~~~  255 (642)
T 1e07_A          178 SYKCETQNPVSARRSDSVILNVLYGPDAPTIS-PLNTSYRSGENLNLSCHAASNPPAQYSWFV-NGTFQQSTQELFIPNI  255 (642)
T ss_pred             eEEEEEecCCCCcccceEEEEEEeCCCCcEEe-cCCcccccCCEEEEEEEcCCCCCcEEEEEE-CCeEcccCCceEEecc
Confidence            99999976532  3455778888665543322 345568899999999999999999999999 666654332211    


Q ss_pred             ----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC
Q psy15734        175 ----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG  220 (314)
Q Consensus       175 ----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~  220 (314)
                                                        +|.+.. +....+..|+++.|.|.+.+.| +.+.|++++.. +...
T Consensus       256 ~~~d~G~Y~C~a~n~~g~~~~s~~~~v~v~~~~~~p~i~~-~~~~~~~~g~~v~l~C~~~~~p-~~v~W~~~g~~-l~~~  332 (642)
T 1e07_A          256 TVNNSGSYTCQAHNSDTGLNRTTVTTITVYAEPPKPFITS-NNSNPVEDEDAVALTCEPEIQN-TTYLWWVNNQS-LPVS  332 (642)
T ss_pred             cccCCeEEEEEEEeCCCceEEeeeEEEEEEccCCCCEEEc-CCceeEecCCcEEEEEECCCCC-ccEEEEECCcc-CCCc
Confidence                                              123322 2233455688899999999987 79999997443 3333


Q ss_pred             CceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecCCCeeEE---EEccccccEeEEEEEe
Q psy15734        221 DDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLVDGDIFQI---RKMSRLHMGAYLCIAS  296 (314)
Q Consensus       221 ~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~~~~~~---~~~~~~~~g~~~C~a~  296 (314)
                      .++.+. ..++     .|.|.++..+|+|.|+|.|.|..|.. +..+.|.|...|..+...   ..+..++...+.|.+.
T Consensus       333 ~~~~~~-~~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~  406 (642)
T 1e07_A          333 PRLQLS-NDNR-----TLTLLSVTRNDVGPYECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAA  406 (642)
T ss_pred             CCEEEe-CCCC-----EEEEeccCcccCeeEEEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcC
Confidence            333332 1233     89999999999999999999999875 456788888665432221   1234455567999999


Q ss_pred             eccCCCccceE
Q psy15734        297 NGVVPSVSHRI  307 (314)
Q Consensus       297 ~~~~~~~~w~v  307 (314)
                      +.|+|.+.|..
T Consensus       407 g~p~~~i~W~~  417 (642)
T 1e07_A          407 SNPPAQYSWLI  417 (642)
T ss_pred             ccCCCeEEEEE
Confidence            99999999964

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.97  E-value=7.6e-29  Score=203.76  Aligned_cols=238  Identities=18%  Similarity=0.264  Sum_probs=157.8

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.|......+.+.+|+++.|.|.+.+.    +.|++++.. +.          .+......+.....|.|.+++.+|+|.
T Consensus         1 P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~-~~----------~~~~~~~~~~~~~~L~i~~~~~~D~G~   65 (289)
T 3mjg_X            1 LVVTPPGPELVLNVSSTFVLTCSGSAP----VVWERMSQE-PP----------QEMAKAQDGTFSSVLTLTNLTGLDTGE   65 (289)
T ss_dssp             CCBCSSCSEEECCTTCCEEEEEEESSC----CEEEBTTBC-CS----------EEEEECTTSCEEEEEEECSCCGGGCEE
T ss_pred             CeecCCCCeEEEeCCCcEEEEEeccce----EEEECCCCC-cc----------cceeccCCCceeEEEEEccCChhhCEE
Confidence            455556667889999999999999874    999996543 21          111111122223489999999999999


Q ss_pred             EEEEEecCC-C-cceeEEEEEEeC-Cce-eeecCcc--eeEEecCceEEEEEEecccCCCceEEEcCC-CceeecC----
Q psy15734        102 YMCQINTVP-M-TSQKGYLQVVVP-PRI-LLDRTST--DVVVREGTEVTLECSAVGYPEPYVAWRRED-GKAINYN----  170 (314)
Q Consensus       102 Y~C~~~~~~-~-~~~~~~l~v~~~-p~~-~~~~~~~--~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~-~~~~~~~----  170 (314)
                      |+|.+.+.. . ......+.|.+. |.. .....+.  ...+.+|+.+.|.|.+. .|.|.+.|++.+ +..+...    
T Consensus        66 Y~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~~~~~~~  144 (289)
T 3mjg_X           66 YFCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALPVPYDHQ  144 (289)
T ss_dssp             EEEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCCCCEETT
T ss_pred             EEEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccceeecCC
Confidence            999997643 1 223334444443 222 1111111  26788999999999998 678899999853 3332210    


Q ss_pred             ---------CeeC-----------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee
Q psy15734        171 ---------GELV-----------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII  218 (314)
Q Consensus       171 ---------~~~~-----------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~  218 (314)
                               +.+.                       +|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++.....
T Consensus       145 ~~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~~~~~~~~~  224 (289)
T 3mjg_X          145 RGFSGIFEDRSYICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWTYPRKESGR  224 (289)
T ss_dssp             TEEEECCCSSEEEEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEECTTSSSSC
T ss_pred             cCeeeeccCcEEEEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEEcCCccCCC
Confidence                     1110                       34444444556789999999999999999999999986432211


Q ss_pred             cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        219 TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       219 ~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      .................+.|.|.++..+|+|.|+|.|.|..|...+++.|.|...+.
T Consensus       225 ~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~~~  281 (289)
T 3mjg_X          225 LVEPVTDFLLDMPYHIRSILHIPSAELEDSGTYTCNVTESVNDHQDEKAINITVVES  281 (289)
T ss_dssp             CCCCEEEESCTTTTEEEEEEEESSCCSSCCEEEEEEEEETTTTEEEEEEEEEEEEC-
T ss_pred             cccccccccCCcceEEEEEEEEcccChhhCcEEEEEeecCCCCceeEEEEEEEEEec
Confidence            111111111111123456999999999999999999999999999999999987754

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.97  E-value=2.3e-29  Score=213.60  Aligned_cols=257  Identities=16%  Similarity=0.193  Sum_probs=172.9

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeee-----ecCcCEEEEeC--CceeEEEEEeeecCCCCeEE
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV-----TQNKRVSITFN--DHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++++...+........     ....|+.+..+  ....+.|.|.+++.+|+|.|
T Consensus         3 ~v~~~~G~~v~L~C~~~~~p~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y   82 (363)
T 1wio_A            3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (363)
T ss_dssp             EEEEETTSCEEECCCCTTCSSCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCHHHHHTTCCCEEECSCCGGGCEEE
T ss_pred             eEEEeCCCeEEEEEEecCCCceEEEEEeCCccceeccCccEEecCCcccccceeeeeccccCCeEEEEECCCCHHHCEEE
Confidence            468899999999999998888999999966432322111111     11234443220  11233799999999999999


Q ss_pred             EEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC--------
Q psy15734        103 MCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV--------  174 (314)
Q Consensus       103 ~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~--------  174 (314)
                      +|.+.+.   ...+.|.|..   +...   ....+.+|+.+.|.|.+.+.|.|.+.|++.++........+.        
T Consensus        83 ~C~~~n~---~~~~~l~V~~---~~~~---~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~L~i~~v~~~d  153 (363)
T 1wio_A           83 ICEVEDQ---KEEVQLLVFG---LTAN---SDTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQGGKTLSVSQLELQD  153 (363)
T ss_dssp             EEEETTE---EEEEEEEEEE---EEES---SCSSEESBSCEEEEEECCTTCCCCEEEECSSSCEEEESSEEEECSBCGGG
T ss_pred             EEEEEEC---CCcEEEEEEe---CCCC---CceEEecCCCEEEEEEcCCCCCCeEEEEcCCCcccccceEEEEeeCChhc
Confidence            9999653   2355666654   2221   123568999999999999999999999995433222221111        


Q ss_pred             -----------------CCeE--EcCC---CcceeecCccEEEEEEEee-----cCCceeEEecCCCeeeec-------C
Q psy15734        175 -----------------PPML--TIPN---QLEGAFVSQTVELHCHTEA-----FPASLNYWTNEKGDMIIT-------G  220 (314)
Q Consensus       175 -----------------~p~~--~~~~---~~~~v~~g~~~~l~C~~~g-----~p~p~~~W~~~~~~~~~~-------~  220 (314)
                                       ...+  ...+   ....+.+|+.+.|.|.+.+     .|.|.+.|++++......       .
T Consensus       154 ~G~Y~C~a~~~~~~~~~~~~l~v~~~p~~~~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~~g~~~~~~~~~~~~~~  233 (363)
T 1wio_A          154 SGTWTCTVLQNQKKVEFKIDIVVLAFQKASSIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQAERASSSKSWITFDLKN  233 (363)
T ss_dssp             CEECEEEEEETTEEEEECCEECEECCSCSEEEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEESSCCCCCCEEEEEECS
T ss_pred             CCEEEEEEecCCCeEEEEEEEEEecCCCCCCceEEecCCEEEEEEEEecccccCCCceeEEEecCCCCccceEEEEEecC
Confidence                             1111  1111   4446778999999998888     889999999975433221       2


Q ss_pred             CceeeeEeeCC------eeeEEEEEEeecCCCCCeEEEEEEeeC--CCCceeEEEEEEEecCCCeeEEEEccccccEeEE
Q psy15734        221 DDYEDSRLING------YSCHMTLKIRSILSHQFGSYRCVAVNA--LGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYL  292 (314)
Q Consensus       221 ~~~~~~~~~~~------~~~~s~L~i~~~~~~d~G~Y~C~a~n~--~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~  292 (314)
                      ..+.+......      ......|.|.++..+|+|.|+|.|.|.  .|.....+.|.|....           ++...++
T Consensus       234 ~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~-----------g~~~~l~  302 (363)
T 1wio_A          234 KEVSVKRVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRAT-----------QLQKNLT  302 (363)
T ss_dssp             SCEEEEEEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEEC-----------CCSSSEE
T ss_pred             CeeeccccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEec-----------CCCeeEE
Confidence            33322211100      000238999999999999999999999  9988889888887332           3446799


Q ss_pred             EEEeeccCCC--ccce
Q psy15734        293 CIASNGVVPS--VSHR  306 (314)
Q Consensus       293 C~a~~~~~~~--~~w~  306 (314)
                      |.+.+.|+|.  +.|.
T Consensus       303 C~~~g~p~p~~~i~W~  318 (363)
T 1wio_A          303 CEVWGPTSPKLMLSLK  318 (363)
T ss_dssp             EEEESSCCTTCCEEEE
T ss_pred             EEEccccCCCccEEEE
Confidence            9999999898  8885

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.97  E-value=8.8e-29  Score=207.04  Aligned_cols=243  Identities=15%  Similarity=0.236  Sum_probs=155.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC----ceeEEEEEeeec
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFND----HRSWFLHLRDVQ   95 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~L~i~~~~   95 (314)
                      ...|..++..+.+.+|+++.|.|.+.+. +.+.+.|++++................++....+.    ...+.|.|.+++
T Consensus         3 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~   82 (327)
T 2wng_A            3 ELQVIQPDKSVSVAAGESAILHCTVTSLIPVGPIQWFRGAGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNIT   82 (327)
T ss_dssp             CCCEECCCSEEEEETTSCEEECCEESCCCSCCCEEEEESCSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCC
T ss_pred             eeEEEcCCCceEEecCCcEEEEEEccCcCCCceEEEEECCCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCc
Confidence            3567778889999999999999999886 77899999965321110000000112244433221    234479999999


Q ss_pred             CCCCeEEEEEEecCCCc------ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC--ceEEEcCCCcee
Q psy15734         96 ETDRGWYMCQINTVPMT------SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP--YVAWRREDGKAI  167 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~~~W~~~~~~~~  167 (314)
                      .+|+|.|+|.+.+.+..      .....|.|..+|.......+ ...+.+|+.+.|.|.+.+.|++  .+.|++ ++..+
T Consensus        83 ~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~-~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k-~g~~l  160 (327)
T 2wng_A           83 PADAGTYYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGP-AARATPQHTVSFTCESHGFSPRDITLKWFK-NGNEL  160 (327)
T ss_dssp             GGGCEEEEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECC-SSCBCTTCEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             cccCeEEEEEeecCCCcceeEeecCcEEEEEEecCCCceeecc-ccccCCCCEEEEEEEEeCccCCCcEEEEEE-CCEEc
Confidence            99999999999775432      13457888776654332212 3557889999999999998766  899999 66554


Q ss_pred             ecCC-----------------------------eeC-------------------------CCeEEcCCCcceeecCccE
Q psy15734        168 NYNG-----------------------------ELV-------------------------PPMLTIPNQLEGAFVSQTV  193 (314)
Q Consensus       168 ~~~~-----------------------------~~~-------------------------~p~~~~~~~~~~v~~g~~~  193 (314)
                      ....                             .+.                         +|.+...+..  +.+|+.+
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v  238 (327)
T 2wng_A          161 SDFQTNVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQV  238 (327)
T ss_dssp             CCEEEEEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCC
T ss_pred             cccccccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcE
Confidence            3111                             000                         4444433332  6789999


Q ss_pred             EEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEE
Q psy15734        194 ELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKV  268 (314)
Q Consensus       194 ~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l  268 (314)
                      .|.|.+.|.|++  .+.|++++.. +............++ |...+.|.|.++..+|+|.|+|.|.|..|.. .+++.+
T Consensus       239 ~l~C~~~g~~p~~~~v~W~k~g~~-l~~~~~~~~~~~~~g~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~~~~~s~~~~~  316 (327)
T 2wng_A          239 NVTCQVRKFYPQRLQLTWLENGNV-SRTETASTVTENKDGTYNWMSWLLVNVSAHRDDVKLTCQVEHDGQPAVSKSHDL  316 (327)
T ss_dssp             EEEEEEEEEBSSCEEEEEEETTEE-EEEEECCSCEECTTSCEEEEEEEEC-------CCEEEEEEEETTCCCEEEEEEC
T ss_pred             EEEEEEccccCCCcEEEEEECCeE-ccCcccCceEECCCCcEEEEEEEEEccccccCCCEEEEEEEeCCCCCchhheEE
Confidence            999999996544  7999997443 333222223333333 5666789999999999999999999999865 444433

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.96  E-value=2.4e-28  Score=200.73  Aligned_cols=232  Identities=18%  Similarity=0.193  Sum_probs=165.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...+..+.+.+|+++.|.|.+.+    .+.|++++....              .... ......|.|.+++.+|+
T Consensus         3 p~p~i~~~~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~--------------~~~~-~~~~~~L~i~~~~~~d~   63 (289)
T 3ejj_X            3 PAPVIEPSGPELVVEPGETVTLRCVSNG----SVEWDGPISPYW--------------TLDP-ESPGSTLTTRNATFKNT   63 (289)
T ss_dssp             -CCEEESCSSEEEECTTCCEEEEEECSS----CCEEECSCSSSS--------------EECC-CSSCCEEEESSCCGGGC
T ss_pred             CCcEecCCCceEEECCCCCEEEEEEeCC----cEEEccCCCceE--------------EEec-cCCccEEEEeeeccccC
Confidence            3566666778899999999999999977    499997542210              0111 11123799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCc-eEEEcCCCceeecCCe-----
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPY-VAWRREDGKAINYNGE-----  172 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~-~~W~~~~~~~~~~~~~-----  172 (314)
                      |.|+|.+.+. +..+..+.|.|..+|...... +....+.+|+.+.|.|.+.+.+.+. +.|++.++..+.....     
T Consensus        64 G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~-~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~  142 (289)
T 3ejj_X           64 GTYRCTELEDPMAGSTTIHLYVKDPAHSWNLL-AQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYFFSP  142 (289)
T ss_dssp             EEEEEECCC-----CEEEEEEECCSSCSEEES-CSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEEEET
T ss_pred             EEEEEEEeccCCcceeEEEEEEeCCCcceecc-cceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEEECC
Confidence            9999998654 455677788888877643332 4677889999999999999877665 9998755554422211     


Q ss_pred             ---eC--------------------------------------CCeEEcCCCcceeecCccEEEEEEEee-cCCceeEEe
Q psy15734        173 ---LV--------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEA-FPASLNYWT  210 (314)
Q Consensus       173 ---~~--------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~  210 (314)
                         +.                                      +|.+...+....+.+|+++.|.|.+.+ .|.+.+.|+
T Consensus       143 ~~~L~i~~v~~~d~G~Y~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~  222 (289)
T 3ejj_X          143 WRGFIIRKAKVLDSNTYVCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK  222 (289)
T ss_dssp             TTEEEESSCCGGGCEEEEEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred             CCCEEEeecccccCEEEEEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence               00                                      566666666667789999999999999 799999999


Q ss_pred             cCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      +++.. +......  ......+...+.|.|.++..+|+|.|+|.|.|..|...+++.|.+...+
T Consensus       223 ~~~~~-~~~~~~~--~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~~~s~~L~~~~~~  283 (289)
T 3ejj_X          223 RGDTK-LEIPLNS--DFQDNYYKKVRALSLNAVDFQDAGIYSCVASNDVGTRTATMNFQVVESH  283 (289)
T ss_dssp             ETTEE-CCCCEEE--EECSSSEEEEEEEEESSCCSSSCEEEEEEEECSSCEEEEEEEEECC---
T ss_pred             ECCEE-eeccCCc--ccccceEEeeEEEEEEeecccCCEEEEEEEEcCCCCccccEEEEEEecc
Confidence            97433 3221111  1112223345699999999999999999999999999999999876554

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.96  E-value=1.4e-28  Score=204.60  Aligned_cols=238  Identities=18%  Similarity=0.290  Sum_probs=163.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCce-----EEEEEEcCceeEEEe----eeeeeecCcCEEEEeC----CceeEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREY-----KVAWVKMITQTILSI----HHKVVTQNKRVSITFN----DHRSWFLH   90 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~-----~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~----~~~~~~L~   90 (314)
                      ++..|..+.+..|++++|.|.+.+.+.+     .+.|+|++.......    ....+....++.+...    ...+++|.
T Consensus         3 vv~~P~~v~~~~G~~v~L~C~v~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~sL~   82 (313)
T 4fqp_A            3 VVQAPTQVPGFLGDSVTLPCYLQVPNMEVTHVSQLTWARHGESGSMAVFHQTQGPSYSESKRLEFVAARLGAELRNASLR   82 (313)
T ss_dssp             EEECCSEECCBTTSCEEECCEEECCTTSCCCCCEEEEEETTSSSCSEEEETTTEEEESSTTTEEESSCCTTSCCCBCCEE
T ss_pred             EEcCCCEEEEecCCCEEEEEEEECCCCCccceEEEEEEECCCCcceEEEecCCCceeccCcceEEEeeccCCcccceEEE
Confidence            4556778889999999999999765443     599999653211110    0111233345444322    11335799


Q ss_pred             EeeecCCCCeEEEEEEecC--CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCcee
Q psy15734         91 LRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAI  167 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~  167 (314)
                      |.+++.+|+|.|+|.+.+.  +.....+.|.+..+|.+....  ....+..++.+.+.|.+. +.|.+.+.|++ ++..+
T Consensus        83 I~~v~~~D~G~Y~C~v~~~~~~~~~~~~~l~v~~~P~~~~~~--~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~-~~~~~  159 (313)
T 4fqp_A           83 MFGLRVEDEGNYTCLFVTFPQGSRSVDIWLRVLAKPQNTAEV--QKVQLTGEPVPMARCVSTGGRPPAQITWHS-DLGGM  159 (313)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSCEEEEEEEECCBBCCEEEEEE--CCBCCCSSCEEEEEEEEEEEBSCCEEEEEE-TTCCE
T ss_pred             ECcCChhhCEEEEEEEeeccCcceeeeeeeeeccCCcceecc--cceEeecCceEEEEEEccCccCCcEEEeec-CCccc
Confidence            9999999999999998543  333445566667777765543  334466788889999875 67999999998 44433


Q ss_pred             ecC--------C-------------------eeC----------------------CCeEEcC-CCcceeecCccEEEEE
Q psy15734        168 NYN--------G-------------------ELV----------------------PPMLTIP-NQLEGAFVSQTVELHC  197 (314)
Q Consensus       168 ~~~--------~-------------------~~~----------------------~p~~~~~-~~~~~v~~g~~~~l~C  197 (314)
                      ...        +                   .+.                      +|.+.+. .....+..|+++.|.|
T Consensus       160 ~~~~~~~~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C  239 (313)
T 4fqp_A          160 PNTSQVPGFLSGTVTVTSLWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTC  239 (313)
T ss_dssp             EEEEEEECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEE
T ss_pred             cccceeeeecccccccceeeeecccccccCeeEEEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEE
Confidence            211        0                   000                      4555443 3444566789999999


Q ss_pred             EEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        198 HTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       198 ~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      .+.|+|.| .+.|+++++.+. ..     ....+.     +|.|.++..+|+|.|+|.|.|..|....++.|.|...|+
T Consensus       240 ~~~g~P~p~~v~W~~~~~~l~-~~-----~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~PP  307 (313)
T 4fqp_A          240 DARSNPEPTGYNWSTTMGPLP-PF-----AVAQGA-----QLLIRPVDKPINTTLICNVTNALGARQAELTVQVKEGPP  307 (313)
T ss_dssp             EEEEESCCCEEEEEETTBSCC-TT-----EEEETT-----EEEECCCSSCCEEEEEEEEECSSCEEEEEEEEEEECCC-
T ss_pred             EecCCCCCcEEEEEECCEECC-Cc-----eEEeCC-----EEEECcCChhhCEEEEEEEEeCCCcEEEEEEEEEEeCCC
Confidence            99999999 599999865432 11     112333     899999999999999999999999999999999987754

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=99.96  E-value=1.4e-28  Score=217.82  Aligned_cols=243  Identities=14%  Similarity=0.093  Sum_probs=165.3

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ......|+.+.|.|.+.|.|.+.+.|++++.. +..     .......        ........++..|+|.|+|.+.|.
T Consensus       148 p~~~~~~~~~~L~C~a~G~P~P~i~W~~~~~~-~~~-----~~~~~~~--------~~~~~~~~~~~~d~G~Y~C~A~N~  213 (527)
T 3qs9_E          148 PYFRKMENQDALVCISESVPEPIVEWVLCDSQ-GES-----CKEESPA--------VVKKEEKVLHELFGTDIRCCARNE  213 (527)
T ss_dssp             EEEEECSSSSCEEEEEEESSCCEEEEEEC---------------------------CEEECCSEECCCCSSCEEEEEECS
T ss_pred             CcEEecCCceEEEEEEceecCCeEEEEECCCC-Ccc-----ccccCCc--------EEEEeeeeccccCCEEEEEEEEeC
Confidence            34456688899999999999999999995532 110     0000000        012233445689999999999876


Q ss_pred             CCcce--eEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCC---------------
Q psy15734        110 PMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNG---------------  171 (314)
Q Consensus       110 ~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~---------------  171 (314)
                      .....  .+.|.|..+|.+    .+....+.+|+.+.|.|.+. +.|.|.+.|++ ++..+....               
T Consensus       214 ~G~~~~~~~~l~V~~~p~~----~p~~~~v~~G~~v~L~C~~~~g~p~p~i~W~k-~g~~l~~~~~~~~~~~~~~~~~~~  288 (527)
T 3qs9_E          214 LGRECTRLFTIDLNQTPQT----TLPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEEGNYFEMSTYSTNRTMIR  288 (527)
T ss_dssp             SCEEEEECEEEESSSCCCC----SCCEEEECTTSCEEEEEEEEESSSCCCEEEEC-SSSCCCGGGEEEEEEEETTTEEEE
T ss_pred             CCcccceEEEEEEeccCcc----CCCceEEeCCCeEEEEEEEccCCCCeEEEEEE-CCEECCCCceeeeeeeccCcceee
Confidence            43322  256777666655    24577889999999999997 88999999999 554432210               


Q ss_pred             --eeC------------------------------CCeEEcCC--CcceeecCccEEEEEEEeecCCceeEEecCCCeee
Q psy15734        172 --ELV------------------------------PPMLTIPN--QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI  217 (314)
Q Consensus       172 --~~~------------------------------~p~~~~~~--~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~  217 (314)
                        .+.                              +|.+...+  ....+.+|+++.|.|.+.|.|.|.+.|++++ ..+
T Consensus       289 ~~~L~I~~v~~~DsG~Y~C~a~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~g-~~l  367 (527)
T 3qs9_E          289 ILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRCTWTFSR-KSF  367 (527)
T ss_dssp             EEEEEESSCCGGGCEEEEEEETTEEEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEEEEEETT-EEE
T ss_pred             EEEEEEccCCcccCeEEEEEEEeCCCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEEEEEECC-EEC
Confidence              000                              45554433  3456788999999999999999999999974 444


Q ss_pred             ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEee
Q psy15734        218 ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASN  297 (314)
Q Consensus       218 ~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~  297 (314)
                      .....+.   ..+.     .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|  .+....    ..+.+.|.|.+
T Consensus       368 ~~~~~~~---~~~~-----~L~I~~v~~~D~G~YtC~A~N~~g~~~~~~~L~V~~~P--~i~~~~----~~~~l~C~a~g  433 (527)
T 3qs9_E          368 PCEQKGL---DNGY-----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRRKP--QVLAEA----SASQASCFSDG  433 (527)
T ss_dssp             ECBCCBC---SSSS-----EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC--CCC--EEEECC----CCE---EEEEC
T ss_pred             cCCcccc---cCCc-----EEEEecCCcccCEEEEEEEEeCCCcEEEEEEEEEecCC--eEEEeC----CCCEEEEEEEE
Confidence            3333221   1233     89999999999999999999999999999998888664  332221    24579999999


Q ss_pred             ccCCCccce
Q psy15734        298 GVVPSVSHR  306 (314)
Q Consensus       298 ~~~~~~~w~  306 (314)
                      .|.|.+.|.
T Consensus       434 ~P~p~i~W~  442 (527)
T 3qs9_E          434 YPLPSWTWK  442 (527)
T ss_dssp             SSCCEEEEE
T ss_pred             EcCCeEEEE
Confidence            999999995

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.96  E-value=2.2e-28  Score=204.89  Aligned_cols=244  Identities=21%  Similarity=0.352  Sum_probs=167.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCC----CceEEEEEEcCceeE--EEeee------eeeecCcCEEEEeCCceeEE
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENL----REYKVAWVKMITQTI--LSIHH------KVVTQNKRVSITFNDHRSWF   88 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~~~~--~~~~~------~~~~~~~~~~~~~~~~~~~~   88 (314)
                      ++.++..+..+.+.+|+++.|.|.+.+.    +.+.+.|++++....  .....      .......|+.+.......++
T Consensus        14 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~~~~~~i~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~   93 (331)
T 3u83_A           14 PSQVVQVNDSMYGFIGTDVVLHCSFANPLPSVKITQVTWQKSTNGSKQNVAIYNPSMGVSVLAPYRERVEFLRPSFTDGT   93 (331)
T ss_dssp             -------CEEEEEETTCCEEECCBCSSCCSSCEEEEEEEEEEETTEEEEEEEEETTTEEEECTTCTTTEEESSCSSSBCC
T ss_pred             CcceEEcCCcEEEEecCCEEEeeecCCCCCCCceEEEEEEEcCCCCCceEEEEeccCCCCcCcccCCceEecccCCCCce
Confidence            3445566788999999999999999775    556899999532111  11100      00122456665533334457


Q ss_pred             EEEeeecCCCCeEEEEEEe-c-CCCcceeEEEEEEeCCceeeecCcceeEEecC---ceEEEEEE-ecccCCCceEEEcC
Q psy15734         89 LHLRDVQETDRGWYMCQIN-T-VPMTSQKGYLQVVVPPRILLDRTSTDVVVREG---TEVTLECS-AVGYPEPYVAWRRE  162 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~-~-~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g---~~~~l~C~-~~~~p~p~~~W~~~  162 (314)
                      |.|.+++.+|+|.|+|.+. + .+.....+.|.|..+|.+.....+....+.+|   +.+.|.|. +.+.|.|.+.|++.
T Consensus        94 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~  173 (331)
T 3u83_A           94 IRLSRLELEDEGVYICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETR  173 (331)
T ss_dssp             EEECSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEES
T ss_pred             EEEcccCcccCcEEEEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceEEEEcC
Confidence            9999999999999999953 3 24456667888988888765544566778888   78999997 78899999999983


Q ss_pred             CCcee-e-----cCC-------------------eeC--------------------CCeEEc-CCCcceeecCccEEEE
Q psy15734        163 DGKAI-N-----YNG-------------------ELV--------------------PPMLTI-PNQLEGAFVSQTVELH  196 (314)
Q Consensus       163 ~~~~~-~-----~~~-------------------~~~--------------------~p~~~~-~~~~~~v~~g~~~~l~  196 (314)
                      ..... .     .++                   .+.                    +|.+.+ +.....+.+|+++.|.
T Consensus       174 ~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~  253 (331)
T 3u83_A          174 LKGEAEYQEIRNPNGTVTVISRYRLVPSREAHQQSLACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLT  253 (331)
T ss_dssp             SCCEEEEEEEECTTSCEEEEEEEEECCCGGGTTCEEEEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEE
T ss_pred             CCCccccceeECCCCcEEEEEEEEEEeccccCCCEEEEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEE
Confidence            11110 0     011                   000                    455543 4455568899999999


Q ss_pred             EEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe-ecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        197 CHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR-SILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       197 C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~-~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      |.+.|.|.|. +.|+++++.+. ..     ....++     +|.|. ++..+|+|.|+|.|.|..|.....+.|.|...+
T Consensus       254 C~~~g~p~p~~i~W~~~~~~~~-~~-----~~~~~~-----~L~i~~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~~~  322 (331)
T 3u83_A          254 CKADANPPATEYHWTTLNGSLP-KG-----VEAQNR-----TLFFKGPINYSLAGTYICEATNPIGTRSGQVEVNITEAA  322 (331)
T ss_dssp             EEEEEESCCCEEEEEETTBSCC-TT-----EEEETT-----EEEECSCCCGGGCEEEEEEEEETTEEEEEEEEECCBC--
T ss_pred             EeCcCCCCCCEEEEEECCCccc-cc-----ceecCc-----EEEEeCCCccccCeEEEEEEEeccccceEEEEEEEeccc
Confidence            9999999998 99999755432 11     112333     89999 999999999999999999999999999887765


Q ss_pred             C
Q psy15734        275 G  275 (314)
Q Consensus       275 ~  275 (314)
                      .
T Consensus       323 ~  323 (331)
T 3u83_A          323 A  323 (331)
T ss_dssp             -
T ss_pred             h
Confidence            3

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.96  E-value=9.8e-28  Score=208.58  Aligned_cols=278  Identities=15%  Similarity=0.177  Sum_probs=177.7

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCc----eEEEEEEcC-ceeEE--Eeee--eeeecCcCEEEEeCCceeEEEEEee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLRE----YKVAWVKMI-TQTIL--SIHH--KVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~----~~v~W~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+...+..+.+.+|+++.|.|.+.+.+.    +.+.|++++ +..+.  ....  .......|+.+...+ ..+.|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~   81 (438)
T 1qgc_4            3 VLTQSPASLAVSLGQRATISCRASESVDSSGHSFMHWYQQKPGQPPKLLIYRASNLESGIPDRFSGSGSR-TDFTLTIDP   81 (438)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEESSSSCBCSSCCTTEEEEEET-TEEEEEESS
T ss_pred             ceEecCCeEEeeCCCCEEEEEecCCCcccCCcceEEEEEECCCCCcEEEEEECcccCCCccCcEEEEccC-CcEEEEeCC
Confidence            3556678899999999999999988765    489999964 22111  1000  001123566655422 335899999


Q ss_pred             ecCCCCeEEEEEEecCCC--cceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEcCCCce
Q psy15734         94 VQETDRGWYMCQINTVPM--TSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRREDGKA  166 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~~~~~~  166 (314)
                      ++.+|+|.|+|.+.+...  ......|.|..   +|.+....  ......+|+.+.|.|.+.+ .|.+ .+.|++ ++..
T Consensus        82 v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~--~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~  158 (438)
T 1qgc_4           82 VEADDVATYYCQQSNEVPLTFGAGTKLDLKRADAAPTVSIFP--PSSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSE  158 (438)
T ss_dssp             CCGGGCEEEEEEECSSTTCCBCCCEEEEECCCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE-TTEE
T ss_pred             CcCcCCeeEEEEEecCCCccccCceeEEecCCCCCCEEEecC--CChhhccCCceEEEEEEccccCCCcEEEEEE-CCEE
Confidence            999999999999976532  23345666653   45554432  1112346889999999987 5777 899999 6665


Q ss_pred             eecC------------Ce------eC---------------------------------CCeEEcCCCcceeecCccEEE
Q psy15734        167 INYN------------GE------LV---------------------------------PPMLTIPNQLEGAFVSQTVEL  195 (314)
Q Consensus       167 ~~~~------------~~------~~---------------------------------~p~~~~~~~~~~v~~g~~~~l  195 (314)
                      +...            +.      +.                                 ++.....+....+.+|+++.|
T Consensus       159 ~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L  238 (438)
T 1qgc_4          159 RQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTSPIVKSFNRNECEVMLVESGGGLVKPGGSLKL  238 (438)
T ss_dssp             ECTTEEEEEECCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEEETTCSSCEEEEEETTC-CCEEEEECCEEECTTCCEEE
T ss_pred             cCCCceeccccccCCCCcEEEEEEEEEeCcccCCCCeEEEEEEecccCCceecccccccceeEEecCCceEEecCCcEEE
Confidence            5433            10      00                                 112222345567889999999


Q ss_pred             EEEEeecC--CceeEEecCC-Ceeee-----------------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        196 HCHTEAFP--ASLNYWTNEK-GDMII-----------------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       196 ~C~~~g~p--~p~~~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      .|.+.|.|  .+.+.|++++ +..+.                 ...++.+.....  .....|.|.+++.+|+|.|+|.|
T Consensus       239 ~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~v~~~D~G~Y~C~a  316 (438)
T 1qgc_4          239 SCTASGFIFNRCAMSWVRQTPEKRLEWVATISSGGTYTYYPDSVKGRFTISRDNA--KNTLYLQMSSLRSADTAMYYCVR  316 (438)
T ss_dssp             EEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCCEECCGGGTTTEEEEEETT--TTEEEEEECSCCGGGCCEEEEEE
T ss_pred             EEEEcccccCCcEEEEEECCCCCCcEEEEEEeecCCceecCcccCCcEEEEeecC--CCeEEEEECCCChhhCEEEEEEE
Confidence            99999998  6799999862 21111                 122333322211  12348999999999999999999


Q ss_pred             eeCCC-----CceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        256 VNALG-----ETDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       256 ~n~~g-----~~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      .|..+     .......|.|...+  .+.+....    +..++...+.|.+.+. |.| .+.|.
T Consensus       317 ~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  380 (438)
T 1qgc_4          317 REDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWN  380 (438)
T ss_dssp             CCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEG
T ss_pred             EccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCCcEEEEe
Confidence            99544     22344566666422  22232221    2344555799999997 767 88884

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.96  E-value=7.1e-27  Score=210.49  Aligned_cols=249  Identities=15%  Similarity=0.213  Sum_probs=167.0

Q ss_pred             eeeeeccCCCCCceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEe-ee---eeeecCcCEEEEeCCc-
Q psy15734         11 YFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSI-HH---KVVTQNKRVSITFNDH-   84 (314)
Q Consensus        11 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~-~~---~~~~~~~~~~~~~~~~-   84 (314)
                      .....+.+..+|.+...+..+.+.+|+++.|.|.+.+. +.+.+.|++++....... ..   .......++.+..++. 
T Consensus       102 ~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  181 (585)
T 2ocw_A          102 SFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSSGYVNPNYTGRIRLDIQGTG  181 (585)
T ss_pred             eEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCCcccCccccCcEEEEeccCC
Confidence            44455566778899888999999999999999999864 457899999764322110 00   0001134555554332 


Q ss_pred             -eeEEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC---CceEE
Q psy15734         85 -RSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE---PYVAW  159 (314)
Q Consensus        85 -~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---p~~~W  159 (314)
                       ..+.|.|.+++.+|+|.|+|.+.+. +.....+.|.|..++       +....+.+|+.+.|.|.+ +.+.   +.+.|
T Consensus       182 ~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~-------p~~~~~~~G~~v~l~C~~-~~~~~~~~~~~w  253 (585)
T 2ocw_A          182 QLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPE-------PELVYEDLRGSVTFHCAL-GPEVANVAKFLC  253 (585)
T ss_pred             CcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCC-------CceeEEcCCCcEEEEEEc-CCCCCCceEEEE
Confidence             2347999999999999999999764 445566777776643       234457789999999997 4443   67888


Q ss_pred             E-cCCCce---e-e--------------c-----CC--eeC-------------------------------------CC
Q psy15734        160 R-REDGKA---I-N--------------Y-----NG--ELV-------------------------------------PP  176 (314)
Q Consensus       160 ~-~~~~~~---~-~--------------~-----~~--~~~-------------------------------------~p  176 (314)
                      + + ++..   + .              .     ++  .+.                                     +|
T Consensus       254 ~~~-~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~g~~~~~~~~~~~~l~V~~~p  332 (585)
T 2ocw_A          254 RQS-SGENCDVVVNTLGKRAPAFEGRILLNPQDKDGSFSVVITGLRKEDAGRYLCGAHSDGQLQEGSPIQAWQLFVNEES  332 (585)
T ss_pred             EeC-CCCCcceEEeCCCcCCcccCCceEeeccCCCcEEEEEEccCChhhCEEEEEEEEcCCCccccCceeeEEEEEeccc
Confidence            6 5 4410   0 0              0     11  010                                     44


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCcee----EEec--CCC--eeeec--------CCceeeeEeeCCeeeEEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLN----YWTN--EKG--DMIIT--------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~----~W~~--~~~--~~~~~--------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      .+...+....+.+|+++.|.|.+.+.|.|.+    .|++  ++.  .+...        ..++.+.  .+......+|.|
T Consensus       333 ~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~~~~g~~~~l~~~~~~~~~~~~~r~~~~--~~~~~g~~~L~I  410 (585)
T 2ocw_A          333 TIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEGAQNGRCPLLVDSEGWVKAQYEGRLSLL--EEPGNGTFTVIL  410 (585)
T ss_pred             ccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEccCCCCCceeeeecceeecccCCCEEEe--ccCCCcEEEEEE
Confidence            4444556677889999999999999999987    7998  543  22211        1122221  111112236999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        241 RSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .++..+|+|.|+|.| |..|.....+.|.|.
T Consensus       411 ~~v~~~D~G~Y~C~a-n~~g~~~~~~~l~V~  440 (585)
T 2ocw_A          411 NQLTSRDAGFYWCLT-NGDTLWRTTVEIKII  440 (585)
T ss_pred             CCCChhhCEEEEEcc-cCCCccceeEEEEEe
Confidence            999999999999999 988888888887774

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.96  E-value=3.9e-28  Score=201.55  Aligned_cols=223  Identities=13%  Similarity=0.130  Sum_probs=161.6

Q ss_pred             CcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         28 VANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      +-.+.+.+|+++.|.|... +.+.+.+.|++++ ..        +..+.++.+...+.. ..|.|.+++.+|+|.|+|.+
T Consensus         8 ~~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k~~-~~--------i~~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~~   77 (312)
T 2y23_A            8 EVVVNVDDDGVISLNFECDKMTPKSEFSWSKDY-VS--------TEDSPRLEVESKGNK-TKMTFKDLGMDDLGIYSCDV   77 (312)
T ss_dssp             CCEEEECTTCCEEEEEECSSCCTTCCEEEEETT-EE--------CTTCTTEEEEEETTE-EEEEESSCCGGGCEEEEEEE
T ss_pred             ceeEEEecCCeEEEEEEEeCCCCCcEEEEEECC-EE--------CCCCCCEEEEEeCCE-EEEEECcCCccCCEEEEEEE
Confidence            3467888999999999985 4678999999954 32        233456666554322 38999999999999999999


Q ss_pred             ecCCCcceeEEEEEEe------------CCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCCe-
Q psy15734        107 NTVPMTSQKGYLQVVV------------PPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGE-  172 (314)
Q Consensus       107 ~~~~~~~~~~~l~v~~------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~~-  172 (314)
                      .+.........+.|..            +|.+.... .....+.+|+.+.|.|.+. +.|.+.+.|++ ++..+..... 
T Consensus        78 ~n~~g~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~-~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~i~~~~~~  155 (312)
T 2y23_A           78 TDTDGIASSYLIDEEELKRLLALSHEHKFPTVPVKS-ELAVEILEKGQVRFWMQAEKLSGNAKVNYIF-NEKEIFEGPKY  155 (312)
T ss_dssp             SSSCCCCEEEEECHHHHHHHHHHHHHHHSCBCCEEE-EEEEEECSSSCEEEEEEESCCCSSCEEEEEE-TTEEECSSSSC
T ss_pred             EeCCCcEEEEEEEEeeeeeeecccccCCCCcccccc-CCceEEeeCCCEEEEEEEEeCCCCCEEEEEE-CCEECeeCCcE
Confidence            7654444455555542            56554432 2367788999999999999 88999999999 6655543221 


Q ss_pred             ------------eC----------------------------------------------------CCeEEcCCCcceee
Q psy15734        173 ------------LV----------------------------------------------------PPMLTIPNQLEGAF  188 (314)
Q Consensus       173 ------------~~----------------------------------------------------~p~~~~~~~~~~v~  188 (314)
                                  +.                                                    +|.+..+. ...+.
T Consensus       156 ~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~-~~~v~  234 (312)
T 2y23_A          156 KMHIDRNTGIIEMFMEKLQDEDEGTYTFQLQDGKATNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYL-SWEVT  234 (312)
T ss_dssp             EEEEETTTTEEEEEESCCCGGGCEEEEEEEESSSCEEEEEEEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEE-EEEEE
T ss_pred             EEEEccCCCEEEEEEccCCcccCEeEEEEEEeCCceEEEEEEEcchhhhhhcccccccccchhhccCCceeecc-eEEEe
Confidence                        00                                                    12222211 25788


Q ss_pred             cCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        189 VSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      +|+++.|.|.+.+.|+| .+.|+++ +..+....++.+.   +   ..+.|.|.++..+|+|.|+|.|.|..|....++.
T Consensus       235 ~G~~~~l~C~~~~~p~~~~v~W~~~-g~~~~~~~~~~~~---~---~~~~L~I~~v~~~d~G~Y~C~a~N~~G~~~~~~~  307 (312)
T 2y23_A          235 GECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDFK---D---GICTLLITEFSKKDAGIYEVILKDDRGKDKSRLK  307 (312)
T ss_dssp             TTTEEEEEEEEESCCSSCEEEEEET-TEEEEEECCC----------CEEEEEECSCSGGGCEEEEEEEESTTCCEEEEEE
T ss_pred             CCCEEEEEEEEcCCCCCCEEEEeeC-CEECCCCCcEEEE---C---CEEEEEECcCCHHHCEEEEEEEEcCCCceeeeeE
Confidence            99999999999999998 9999997 4444434444332   1   1349999999999999999999999999999988


Q ss_pred             EEE
Q psy15734        268 VYV  270 (314)
Q Consensus       268 l~V  270 (314)
                      |.|
T Consensus       308 l~i  310 (312)
T 2y23_A          308 LVD  310 (312)
T ss_dssp             ECS
T ss_pred             EEe
Confidence            865

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=99.96  E-value=2.5e-27  Score=210.59  Aligned_cols=278  Identities=14%  Similarity=0.166  Sum_probs=174.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCc--eEEEEEEcCceeEEEeeeee---eecCcCEEEEeCCceeEEEEEee
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLRE--YKVAWVKMITQTILSIHHKV---VTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      ..+|.+...+....+.+|+++.|.|.+.+.++  +.+.|++++ ..+.......   ...++.+...      ..|.|.+
T Consensus       112 ~~~P~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k~g-~~l~~~~~~~~~~~~~~~~~~~~------s~L~i~~  184 (523)
T 2rcj_C          112 KANPTVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWKADG-SPVKAGVETTKPSKQSNNKYAAS------SYLSLTP  184 (523)
T ss_pred             CcCCeEEecCCcccccCCCceEEEEEeccccCCceEEEEecCC-CCCCCceEeccccccCCCCEEEE------EEEEEec
Confidence            35677666666667788999999999988654  499999954 3332111000   0111222211      2699999


Q ss_pred             ecCCCCeEEEEEEecCCC-cceeEEEE----EEeCCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCce
Q psy15734         94 VQETDRGWYMCQINTVPM-TSQKGYLQ----VVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKA  166 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~-~~~~~~l~----v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~  166 (314)
                      ++.+|+|.|+|.+.+... ....+.+.    +..+|.+....  ....+.+|+.+.|.|.+.|. |.| .+.|++ ++..
T Consensus       185 ~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~--~~~~~~~G~~~~l~C~~~g~~P~p~~v~W~k-~g~~  261 (523)
T 2rcj_C          185 EQWKSHRSYSCQVTHEGSTVEKTVAPTECSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPQPVTVSWNS-GALT  261 (523)
T ss_pred             hhcCCCceEEEEEEecCcccccceeeeecCCCCcCCEEEecC--CCcccccCCceEEEEEEeceeCCCeEEEEec-CCcc
Confidence            999999999999977532 22222222    12345554322  23346789999999999886 878 899999 4433


Q ss_pred             ee---------cCC------------------eeC--------------------CCeE-EcCCCcce-eecCccEEEEE
Q psy15734        167 IN---------YNG------------------ELV--------------------PPML-TIPNQLEG-AFVSQTVELHC  197 (314)
Q Consensus       167 ~~---------~~~------------------~~~--------------------~p~~-~~~~~~~~-v~~g~~~~l~C  197 (314)
                      +.         .++                  .+.                    .|.+ ..++.... +.+|+++.|.|
T Consensus       262 ~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~dG~Y~C~a~n~~g~~~~~~~l~v~~~P~~~~~~p~~~~~v~~g~~~~l~C  341 (523)
T 2rcj_C          262 SGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKRVEPLSLPSVFLFPPKPKDTLMISRTPEVTC  341 (523)
T ss_pred             cceEeCCcEecCCCcEEEEEEEEechhhcCCceEEEEEEeCCCCcceEEecCCCcCceEEecCCCchhhcccCCceEEEE
Confidence            21         111                  110                    2333 33444343 78899999999


Q ss_pred             EEeecCC----ceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE-
Q psy15734        198 HTEAFPA----SLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-  271 (314)
Q Consensus       198 ~~~g~p~----p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-  271 (314)
                      .+.|.|+    +.+.|++++.. +............+ .+...+.|.|.++..+|+|.|+|.|.|..+.......|.+. 
T Consensus       342 ~~~g~~p~~~~~~v~W~k~g~~-l~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~~~~~~  420 (523)
T 2rcj_C          342 VVVDVSHEDPQVKFNWYVDGVQ-VHNAKTKPREQQYNSTYRVVSVLTVLHQNWLDGKEYKCKVSNKALPAPIEKTISKAK  420 (523)
T ss_pred             EEecccCCCCceEEEEEECCeE-ccCCccCCceecCCCcEEEEEEEEECHHHhcCCCeEEEEEeCCCCCCceeEEEEccc
Confidence            9999754    48999997544 33332222222222 35566789999999999999999999988876555444431 


Q ss_pred             -ecCCCeeEEEEcc----ccccEeEEEEEeeccCC--CccceE
Q psy15734        272 -LVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       272 -~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                       ....+.+.+....    ......+.|.|.++++|  .+.|..
T Consensus       421 ~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~k  463 (523)
T 2rcj_C          421 GQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPSDIAVEWES  463 (523)
T ss_pred             CCCCCCEEEEeCCChHHccCCceEEEEEEEeeECCCCEEEEEE
Confidence             1222333332111    12236799999998777  778853

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.96  E-value=5.8e-30  Score=214.78  Aligned_cols=237  Identities=19%  Similarity=0.282  Sum_probs=102.7

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+..+.+.+|+++.|.|.+.+. +.+.+.|++++. .+.        .+.++.+.     .+.|.|.+++.+|+|.|+|
T Consensus        13 ~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~g~-~~~--------~~~~~~~~-----~~~L~i~~v~~~D~G~Y~C   78 (334)
T 1ry7_B           13 GQQEQLVFGSGDAVELSCPPPGGGPMGPTVWVKDGT-GLV--------PSERVLVG-----PQRLQVLNASHEDSGAYSC   78 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCcCcEEEecCCcEEEEeeCCCCCCCcceEEEECCe-eCC--------CcccEEec-----cceEEEeecccccCEEEEE
Confidence            34778899999999999999876 568999999543 221        22333321     2379999999999999999


Q ss_pred             EEecCCCcceeEEEEEEeCC----------------------ceeee--cCcceeEEecCceEEEEEEecccCCCceEEE
Q psy15734        105 QINTVPMTSQKGYLQVVVPP----------------------RILLD--RTSTDVVVREGTEVTLECSAVGYPEPYVAWR  160 (314)
Q Consensus       105 ~~~~~~~~~~~~~l~v~~~p----------------------~~~~~--~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~  160 (314)
                      .+.+.+.....+.|.|...+                      .+...  .......+.+|+.+.|.|.+.+.|.+.+.|+
T Consensus        79 ~a~n~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~  158 (334)
T 1ry7_B           79 RQRLTQRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWL  158 (334)
T ss_dssp             ----------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECC
T ss_pred             EEEeCCeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEE
Confidence            99766444555666666433                      22111  0122456889999999999999999999999


Q ss_pred             cCCCceeecCCe------------eC-------------------------------------CCeEEc-CCCcceeecC
Q psy15734        161 REDGKAINYNGE------------LV-------------------------------------PPMLTI-PNQLEGAFVS  190 (314)
Q Consensus       161 ~~~~~~~~~~~~------------~~-------------------------------------~p~~~~-~~~~~~v~~g  190 (314)
                      + ++..+.....            +.                                     +|.+.. .+....+.+|
T Consensus       159 ~-~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G  237 (334)
T 1ry7_B          159 K-NGREFRGEHRIGGIKLRHQQWSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLG  237 (334)
T ss_dssp             B-TTBCCCTTSSTTCCCCCTTTTEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESS
T ss_pred             E-CCEECcccccccceecccceEEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCC
Confidence            9 5555432211            00                                     122222 2355678899


Q ss_pred             ccEEEEEEEeecCCceeEEecC---CCeeeecCCceeeeEe-eCC----eeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        191 QTVELHCHTEAFPASLNYWTNE---KGDMIITGDDYEDSRL-ING----YSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p~~~W~~~---~~~~~~~~~~~~~~~~-~~~----~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +++.|.|.+.|.|.|.+.|+++   ++..+........... ..+    ....+.|.|.++..+|+|.|+|.|.|..|..
T Consensus       238 ~~v~l~C~~~g~p~p~v~W~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~G~~  317 (334)
T 1ry7_B          238 SDVEFHCKVYSDAQPHIQWLKHVEVNGSKVGPDGTPYVTVLKTAGANTTDKELEVLSLHNVTFEDAGEYTCLAGNSIGFS  317 (334)
T ss_dssp             CCEEECCCCBCSSCEEEEEEECCCGGGCSBCTTSSBCCCCCCCSSCSCSCTTCCCEEECSCCTTSCSEEEEEEEESSCCE
T ss_pred             CCEEEEEEEecCCCCeEEEEECCcCCCccccCCCCeeEEEeecCccccccccccEEEEccCCHHHCEEEEEEEeCCCCeE
Confidence            9999999999999999999994   2333322222111100 000    0012379999999999999999999999999


Q ss_pred             eeEEEEEEEecCCCe
Q psy15734        263 DGFIKVYVNLVDGDI  277 (314)
Q Consensus       263 ~~~~~l~V~~~~~~~  277 (314)
                      ..++.|.|...+.+.
T Consensus       318 ~~~~~l~V~~~~~~~  332 (334)
T 1ry7_B          318 HHSAWLVVLPAEEEL  332 (334)
T ss_dssp             EEEEEEEEECSCCC-
T ss_pred             EEEEEEEEEECCCCc
Confidence            999999998876553

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=99.96  E-value=1.9e-27  Score=203.28  Aligned_cols=222  Identities=26%  Similarity=0.373  Sum_probs=159.9

Q ss_pred             CcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         28 VANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ...+.+.+|+.+.|.|... +.+.+.+.|++++.. +        ..+.+..+...   .+.|.|.+++.+|+|.|+|.+
T Consensus       109 ~~~~~v~~G~~~~l~C~~~~~~~~~~~~W~~~~~~-~--------~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a  176 (384)
T 3kld_A          109 RSTVSVRRGQGMVLLCGPPPHSGELSYAWIFNEYP-S--------YQDNRRFVSQE---TGNLYIAKVEKSDVGNYTCVV  176 (384)
T ss_dssp             CCCEEEEETCCEEECCCCCSEESCEEEEEEETTEE-C--------CCSSSEEECTT---TCCEEESSCCGGGCEEEEEEE
T ss_pred             CCceeEEcCCCeEEecCCCCCCCCeEEEEEECCCC-C--------EeeccEEEEcC---CCcEEEeecCHHHCceEEEEE
Confidence            4568899999999999764 346689999995432 1        12223222211   236999999999999999999


Q ss_pred             ecCCCcce----eEEEEEE-------eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC----
Q psy15734        107 NTVPMTSQ----KGYLQVV-------VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG----  171 (314)
Q Consensus       107 ~~~~~~~~----~~~l~v~-------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~----  171 (314)
                      .|......    ...+.+.       .+|.+... .+....+.+|+.+.|.|.+.|.|.|.+.|++.++..+....    
T Consensus       177 ~n~~~~~~~~~~~~~~~v~~~~~~~~~~p~~~~~-~~~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~  255 (384)
T 3kld_A          177 TNTVTNHKVLGPPTPLILRNDGVMGEYEPKIEVQ-FPETVPAEKGTTVKLECFALGNPVPTILWRRADGKPIARKARRHK  255 (384)
T ss_dssp             EETTTTEEEECCCEEEEEEEEEECCCEEEEEEEE-CCSEEEEETTSCEEEEEEEEEESCCEEEEEETTCCCCCTTCEECT
T ss_pred             ecccccceeeCCceEEEEccCCcccccCCceeec-CCCceEecCCCcEEEEEEEeecCCCcEEEEeCCCccccccceecC
Confidence            77532211    1122221       12333222 24566788999999999999999999999986654433211    


Q ss_pred             ---eeC---------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe
Q psy15734        172 ---ELV---------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD  215 (314)
Q Consensus       172 ---~~~---------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~  215 (314)
                         .+.                                 +|.+...+....+..|+++.|.|.+.|.|.|.+.|+++ +.
T Consensus       256 ~~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i~W~k~-g~  334 (384)
T 3kld_A          256 SNGILEIPNFQQEDAGSYECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTYRWLKN-GD  334 (384)
T ss_dssp             TSCEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEEEEEET-TE
T ss_pred             CCcEEEECCCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeEEEEEC-CE
Confidence               110                                 56666666778899999999999999999999999997 44


Q ss_pred             eeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .+....++.+   .++     +|.|.++..+|+|.|+|.|.|..|....+..|.|.
T Consensus       335 ~l~~~~~~~~---~~~-----~L~i~~v~~~D~G~Y~C~A~N~~G~~~~~a~L~V~  382 (384)
T 3kld_A          335 PLLTRDRIQI---EQG-----TLNITIVNLSDAGMYQCVAENKHGVIFSSAELSVI  382 (384)
T ss_dssp             ECCCBTTEEE---ETT-----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             ECCCCccEEE---eCC-----EEEEeecChhhCEEEEEEEEeCCceEEeceEEEEe
Confidence            4444444332   344     99999999999999999999999999999999885

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=99.96  E-value=1.3e-27  Score=205.51  Aligned_cols=239  Identities=21%  Similarity=0.270  Sum_probs=169.9

Q ss_pred             eccCCCCCcee-cCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEe
Q psy15734         15 KCEKPDMPRFA-EPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        15 ~~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   92 (314)
                      .+.+...|.+. .......+.+|+++.|.|.+ .+.+.+.+.|++++...+        ..+.++....+    +.|.|.
T Consensus       109 ~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~--------~~~~~~~~~~~----~~l~i~  176 (404)
T 3p3y_A          109 RLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVIFWMSSSMEPI--------TQDKRVSQGHN----GDLYFS  176 (404)
T ss_dssp             EEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEEEEECTTSCBC--------CCCSSEEECTT----SCEEES
T ss_pred             EEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeEEEeCCCcccc--------CCCCcEEEcCC----CcEEEE
Confidence            34444555543 34556889999999999999 677889999999654321        22334443322    269999


Q ss_pred             eecCCC-CeEEEEEEecCCCc----ceeEEEEEEeC-------Cceeeec-CcceeEEecCceEEEEEEecccCCCceEE
Q psy15734         93 DVQETD-RGWYMCQINTVPMT----SQKGYLQVVVP-------PRILLDR-TSTDVVVREGTEVTLECSAVGYPEPYVAW  159 (314)
Q Consensus        93 ~~~~~d-~G~Y~C~~~~~~~~----~~~~~l~v~~~-------p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~p~~~W  159 (314)
                      +++.+| .|.|+|.+.+....    .....+.|...       |.+.... .+....+.+|+.+.|.|.+.+.|.+.+.|
T Consensus       177 ~v~~~d~~G~Y~C~a~n~~~~~~~~~~~~~l~v~~~~~~~~~~p~~~~~~~~~~~~~~~~G~~v~l~C~~~g~p~~~v~W  256 (404)
T 3p3y_A          177 NVMLQDMQTDYSCNARFHFTHTIQQKNPFTLKVLTTRGVAERTPSFMYPQGTASSQMVLRGMDLLLECIASGVPTPDIAW  256 (404)
T ss_dssp             SCCSGGGSSCBEEEEECTTTCCEEECCCBCEEEECCSCCCCCCCCBSSSCSSEEEEEEETTSCEEEECCBCCSSCCEEEE
T ss_pred             eeeeccCCcceEEEEEeccccceeccCceeEEEeccCCccccCCccccccCCCCCceEecCCCEEEEEEECCCCCCcEEE
Confidence            999999 59999999765322    22244555532       2222111 12345688999999999999999999999


Q ss_pred             EcCCCceeecCCee--------C---------------------------------CCeEEcCCCcceeecCccEEEEEE
Q psy15734        160 RREDGKAINYNGEL--------V---------------------------------PPMLTIPNQLEGAFVSQTVELHCH  198 (314)
Q Consensus       160 ~~~~~~~~~~~~~~--------~---------------------------------~p~~~~~~~~~~v~~g~~~~l~C~  198 (314)
                      ++ ++..+......        .                                 +|.+...+....+.+|+++.|.|.
T Consensus       257 ~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~  335 (404)
T 3p3y_A          257 YK-KGGDLPSDKAKFENFNKALRITNVSEEDSGEYFCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCR  335 (404)
T ss_dssp             EE-TTBCCCTTTEEEEGGGTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECE
T ss_pred             EE-CCEECCCCcccccccCceEEEccCCHhHCEEEEEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEE
Confidence            99 56554332211        0                                 667777777788999999999999


Q ss_pred             EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       199 ~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +.|.|.|.+.|++++ ..+............++     .|.|.++..+|+|.|+|.|.|..|....++.|.|..
T Consensus       336 ~~g~p~p~v~W~~~g-~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~d  403 (404)
T 3p3y_A          336 ANGNPKPTVQWMVNG-EPLQSAPPNPNREVAGD-----TIIFRDTQISSRAVYQCNTSNEHGYLLANAFVSVLD  403 (404)
T ss_dssp             EEEESCCEEEEEETT-EEGGGSCCCTTEEEETT-----EEEESSCCSSCCCEEEEEEEETTEEEEEEEEEEEC-
T ss_pred             ccccCCCceEEEECC-EecCCCCCCceEEecCC-----EEEEeecCHHHCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999974 43433322222223344     899999999999999999999999999999888753

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.96  E-value=4.5e-27  Score=190.26  Aligned_cols=203  Identities=18%  Similarity=0.184  Sum_probs=150.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|...+..+.+.+|+++.|.|.+.+.+.+ .+.|++++ ..+.        ..           ...|.|.+++.+|+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~~g-~~~~--------~~-----------~~~l~i~~~~~~d~   60 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGSSSTQWFLNG-TATQ--------TS-----------TPSYRITSASVNDS   60 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCTTCEEEEETT-EECS--------CC-----------SSEEEESSCCGGGC
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCCceEEEEECC-EEee--------cc-----------CCeEEEecCCcccC
Confidence            4788888888999999999999999887766 99999954 3221        11           12799999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCC---eeC-
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNG---ELV-  174 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~---~~~-  174 (314)
                      |.|+|.+.+. ..+..+.|.|..++....   +....+.+|+.+.|.|.+ .+.|.+.+.|++ ++..+....   .+. 
T Consensus        61 G~Y~C~~~~~-~~s~~~~l~v~~~~~~~~---~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~-~g~~~~~~~~~~~l~i  135 (262)
T 3rjd_A           61 GEYRCQRGLS-GRSDPIQLEIHRGWLLLQ---VSSRVFTEGEPLALRCHAWKDKLVYNVLYYR-NGKAFKFFHWNSNLTI  135 (262)
T ss_dssp             EEEEEEESSS-CCCCCEEEEEECSSEEEE---ESCSEEETTSCEEEEEEEGGGCCCEEEEEEE-TTEEEEEEEECCCEEE
T ss_pred             eEEEEEEecC-CccccEEEEEeccceEec---CCCeEEecCCeEEEEEEccCCCCCceEEEEE-CCccccccCCCCeEEE
Confidence            9999999653 344567788877664433   234567899999999999 677888999999 666554221   110 


Q ss_pred             -----------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCC-ce----eEEecCCC
Q psy15734        175 -----------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA-SL----NYWTNEKG  214 (314)
Q Consensus       175 -----------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~----~~W~~~~~  214 (314)
                                                         +|.+...+ ...+.+|+.+.|.|.+.+.|. |.    +.|++++.
T Consensus       136 ~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~~p~~~~~~~w~~~~~  214 (262)
T 3rjd_A          136 LKTNISHNGTYHCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQRPGLQLYFSFYMGSK  214 (262)
T ss_dssp             SSCCGGGCEEEEEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC-----EEEEEEETTE
T ss_pred             EECChhhCEEEEEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCCCCCccEEEEEEeCCc
Confidence                                               44454444 556889999999999999886 53    57888643


Q ss_pred             eeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        215 DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       215 ~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                       .+...       ...     +.|.|.++..+|+|.|+|.|.|..|..
T Consensus       215 -~~~~~-------~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~G~~  249 (262)
T 3rjd_A          215 -TLRGR-------NTS-----SEYQILTARREDSGLYWCEAATEDGNV  249 (262)
T ss_dssp             -EEEEE-------ESC-----CEEEESSCCGGGCEEEEEEEEETTSSC
T ss_pred             -Eeccc-------CCC-----ceEEEEEechhhCeEEEEEEEcccCce
Confidence             33211       111     389999999999999999999999975

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.96  E-value=3e-28  Score=205.57  Aligned_cols=242  Identities=17%  Similarity=0.170  Sum_probs=137.1

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCc-----------eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         26 EPVANVTATVGKEALMACVVENLRE-----------YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~-----------~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+...+.+.+|+++.|.|.+.+.+.           +.+.|++++..............+.++....     +.|.|.++
T Consensus        12 ~~~~~v~v~~G~~v~L~C~~~~~p~~~~ys~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~i~~~   86 (349)
T 4dep_C           12 DTMRQIQVFEDEPARIKCPLFEHFLKFNYSTAHSAGLTLIWYWTRQDRDLEEPINFRLPENRISKEK-----DVLWFRPT   86 (349)
T ss_dssp             CCCCCCEEETTSCEEEECTCCCCCSSSCHHHHHHTTCEEEEEEEESSCCCEEECCCCCGGGCEEEET-----TEEEESSC
T ss_pred             ceeeeEEEecCCeEEEEccccccccccccccccCCCceEEEEECCCCCcccccccccccCceEeecC-----CEEEEccC
Confidence            3466789999999999999987553           8999999653110000000001233443322     27999999


Q ss_pred             cCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeec--CcceeEEecCceEEEEEEe-----cccCCCceEEEcCCCce
Q psy15734         95 QETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDR--TSTDVVVREGTEVTLECSA-----VGYPEPYVAWRREDGKA  166 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~--~~~~~~~~~g~~~~l~C~~-----~~~p~p~~~W~~~~~~~  166 (314)
                      +.+|+|.|+|.+.+. +.....+.|.|..++......  .+....+.+|+.+.|.|.+     .+.|.|.+.|++ ++..
T Consensus        87 ~~~D~G~Y~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k-~~~~  165 (349)
T 4dep_C           87 LLNDTGNYTCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTITWYM-GCYK  165 (349)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEEEEEE-TTEE
T ss_pred             ChhhCEEEEEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceEEEee-CCEE
Confidence            999999999999765 344556678887766533221  1345578899999999985     678999999999 6655


Q ss_pred             eecCC-------eeC-------------------------------------------CCeEEcCCCcc--eeecCccEE
Q psy15734        167 INYNG-------ELV-------------------------------------------PPMLTIPNQLE--GAFVSQTVE  194 (314)
Q Consensus       167 ~~~~~-------~~~-------------------------------------------~p~~~~~~~~~--~v~~g~~~~  194 (314)
                      +....       .+.                                           +|.+..+....  .+.+|+++.
T Consensus       166 l~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~  245 (349)
T 4dep_C          166 IQNFNNVIPEGMNLSFLIALISNNGNYTCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELL  245 (349)
T ss_dssp             CCSCSSEEEETTEEEEESCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------C
T ss_pred             CCCccceeecCCEEEEeeeeecCCcEEEEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEE
Confidence            43211       000                                           24443333322  778999999


Q ss_pred             EEEEEe----ecCCceeEEecCCCeeeecCCceeeeE-----eeCCeeeEEEEEEeecCCCCC-eEEEEEEeeCCCCcee
Q psy15734        195 LHCHTE----AFPASLNYWTNEKGDMIITGDDYEDSR-----LINGYSCHMTLKIRSILSHQF-GSYRCVAVNALGETDG  264 (314)
Q Consensus       195 l~C~~~----g~p~p~~~W~~~~~~~~~~~~~~~~~~-----~~~~~~~~s~L~i~~~~~~d~-G~Y~C~a~n~~g~~~~  264 (314)
                      |.|.+.    |.|.|.+.|++++..+.....++....     ..++....++|.|.++..+|+ |.|+|.|.|..|....
T Consensus       246 l~C~~~~~~~g~p~p~v~W~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~  325 (349)
T 4dep_C          246 IPCTVYFSFLMDSRNEVWWTIDGKKPDDITIDVTINESISHSRTEDETRTQILSIKKVTSEDLKRSYVCHARSAKGEVAK  325 (349)
T ss_dssp             CCEEEEECCCTTCCCEEEEESSCC--------CCCCEEEECCTTCCEEEEECC-------------CEEEEECSSCEEEE
T ss_pred             EEEEEEEccCCCCCCEEEEEECCEEccccCCccccccceeeecCCCcEEEEEEEEeeccHHHcCCcEEEEEEcCCCcEEE
Confidence            999999    578999999997554333122222211     012223345799999999999 9999999999999999


Q ss_pred             EEEEEEEec
Q psy15734        265 FIKVYVNLV  273 (314)
Q Consensus       265 ~~~l~V~~~  273 (314)
                      .+.|.|..+
T Consensus       326 ~~~l~v~~~  334 (349)
T 4dep_C          326 AAKVKQKVP  334 (349)
T ss_dssp             ECC------
T ss_pred             EEEEeeecC
Confidence            999988653

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.96  E-value=9.5e-28  Score=197.41  Aligned_cols=231  Identities=19%  Similarity=0.243  Sum_probs=162.4

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+..+.+.+|+++.|.|.+.+.    +.|+++...              +..+... .....|.|.+++.+|+
T Consensus         3 ~~P~i~~~~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~--------------~~~~~~~-~~~~~L~i~~~~~~d~   63 (292)
T 4dkd_C            3 SIPVIEPSVPELVVKPGATVTLRCVGNGS----VEWDGPPSP--------------HWTLYSD-GSSSILSTNNATFQNT   63 (292)
T ss_dssp             -CCEEESCCSSCEECTTCCEEEEEECSSC----CCBCCCCCS--------------SCEECCB-TTEEEEEESSCCGGGC
T ss_pred             CCceecCCCCeEEEcCCCcEEEEEcCCCc----eEEccCCCC--------------ceEEecc-CceEEEEEcccccccC
Confidence            46888888889999999999999999873    899964321              1111111 1233799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC--CceEEEcCCCceeecCCee---
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRREDGKAINYNGEL---  173 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~~~~~~~~~~---  173 (314)
                      |.|+|.+.+. +..+..+.|.|..+|...... +....+.+|+.+.|.|.+.+ |.  +.+.|++.++..+......   
T Consensus        64 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~~~~-~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~  141 (292)
T 4dkd_C           64 GTYRCTEPGDPLGGSAAIHLYVKDPARPWNVL-AQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSFS  141 (292)
T ss_dssp             SCEEECCCC----CCEEECCEECCSSCCEEES-CSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEECC
T ss_pred             EEEEEEEccCCCCcceEEEEEEcCcccccccc-CCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCccccc
Confidence            9999999654 445677788888877643332 45677899999999999987 44  7899998544443222110   


Q ss_pred             -----C--------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEE
Q psy15734        174 -----V--------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYW  209 (314)
Q Consensus       174 -----~--------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W  209 (314)
                           .                                      +|.+...+....+.+|+++.|.|.+.+.|++ .+.|
T Consensus       142 ~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w  221 (292)
T 4dkd_C          142 PWHGFTIHRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFL  221 (292)
T ss_dssp             SSSCCEETTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEEC
T ss_pred             CCceEEECCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEE
Confidence                 0                                      5566666666677899999999999997764 5667


Q ss_pred             ecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      ++++..... ...  .....+.+...+.|.|.++..+|+|.|+|.|.|..|....++.|.|....
T Consensus       222 ~~~~~~~~~-~~~--~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~~  283 (292)
T 4dkd_C          222 QHNNTKLAI-PQQ--SDFHNNRYQKVLTLNLDQVDFQHAGNYSCVASNVQGKHSTSMFFRVVESA  283 (292)
T ss_dssp             CBSSCCCCC-CBE--EEEETTEEEEEEEEEESSCCTTSCEEEEEEEECSSCEEEEEEEECC----
T ss_pred             eCCCccccc-Ccc--ceeccceeeeEEEEEECccChhcCeEEEEEEecCCCCceeEEEEEEeeCC
Confidence            776433221 111  11112223445699999999999999999999999999999999887654

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=99.96  E-value=6.5e-28  Score=206.39  Aligned_cols=230  Identities=17%  Similarity=0.289  Sum_probs=163.9

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEee
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+..+|.+...+....+.+|+++.|.|.+.+.+   .+.+.|++++......    ....+.++.+..+    +.|.|.+
T Consensus        99 ~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~~~~~v~W~~~~~~~~~~----~~~~~~~~~~~~~----~~L~i~~  170 (388)
T 2v5m_A           99 RAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVADFVEVVSWHTDEEENYFP----GAEYDGKYLVLPS----GELHIRE  170 (388)
T ss_dssp             EEECCCCCCCBCCCEEEETTSCEEECCBCCTTTTTTEEEEEEEETTCCEECS----SSCBTTTEEECTT----SCEEESS
T ss_pred             EEccccccccCccceeeecCCcEEEEEECcCCCCCCcceEEEEeCCCccccc----ccCCCCcEEEccC----CcEEEec
Confidence            334567777777888999999999999997753   3899999965432110    0112345444332    2699999


Q ss_pred             ecCCCC-eEEEEEEecCCCcc-----eeEEEEEEeCCc-----eeeecCcceeEEecCceEEEEEEecccCCCceEEEcC
Q psy15734         94 VQETDR-GWYMCQINTVPMTS-----QKGYLQVVVPPR-----ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE  162 (314)
Q Consensus        94 ~~~~d~-G~Y~C~~~~~~~~~-----~~~~l~v~~~p~-----~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~  162 (314)
                      ++.+|+ |.|+|.+.+.....     ....|.|..+..     +... ......+.+|+.+.|.|.+.++|.|.+.|++.
T Consensus       171 v~~~d~~G~Y~C~~~n~~~~~~~~~~~~~~l~v~~~~~~~~p~~~~~-~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~  249 (388)
T 2v5m_A          171 VGPEDGYKSYQCRTKHRLTGETRLSATKGRLVITEPISSSAPRTPAL-VQKPLELMVAHTISLLCPAQGFPAPSFRWYKF  249 (388)
T ss_dssp             CCGGGGGCCEEEEEEETTTCCEEECSSCBCEEEECCCSCEEEECCSS-CCCCEEEETTSCEEECCCCEEESCCEEEEEEE
T ss_pred             CCccccCeeEEEEeccCCCCceeeccccceEEEecCCcCCCCcCccc-cCCceEEeeCCcEEEEEECCCCCCCEEEEEec
Confidence            999999 99999997642111     112466665422     1111 12335678899999999999999999999984


Q ss_pred             CCc-----eeec-------CCeeC---------------------------------CCeEEcCCCcceeecCccEEEEE
Q psy15734        163 DGK-----AINY-------NGELV---------------------------------PPMLTIPNQLEGAFVSQTVELHC  197 (314)
Q Consensus       163 ~~~-----~~~~-------~~~~~---------------------------------~p~~~~~~~~~~v~~g~~~~l~C  197 (314)
                      +..     .+..       .+.+.                                 +|.+...+....+.+|+++.|.|
T Consensus       250 ~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C  329 (388)
T 2v5m_A          250 IEGTTRKQAVVLNDRVKQVSGTLIIKDAVVEDSGKYLCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTC  329 (388)
T ss_dssp             CTTSSCEEECCCSSSEEEETTEEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEE
T ss_pred             CCCCcccccccccCceecccCEEEECcCCHHHCeEEEEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEE
Confidence            211     0100       11110                                 56666667777899999999999


Q ss_pred             EEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        198 HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       198 ~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      .+.|.|.|.+.|++++ ..+...         +.     .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       330 ~~~g~p~p~i~W~~~g-~~i~~~---------~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V  387 (388)
T 2v5m_A          330 QYTGNPIKTVSWMKDG-KAIGHS---------ES-----VLRIESVKKEDKGMYQCFVRNDRESAEASAELKL  387 (388)
T ss_dssp             EEEEECCCEEEEEETT-EECSCC---------SS-----EEEESSCCGGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             EeccccCCeEEEEECC-EECccC---------CC-----EEEEecCChhhCEEEEEEEEcCCCcEEEEEEEEe
Confidence            9999999999999974 333221         22     9999999999999999999999999999998876

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.95  E-value=9.1e-27  Score=202.89  Aligned_cols=277  Identities=14%  Similarity=0.214  Sum_probs=173.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEE---Eeee------eeeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTIL---SIHH------KVVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~---~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..+.   ....      ......+|+.+..+. ...++|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (444)
T 1igt_B            5 QESGGGLVQPGGSLKLSCATSGFTFSDYYMYWVRQTPEKRLEWVAYISNGGGSTYYPDTVKGRFTISRDNAKNTLYLQMS   84 (444)
T ss_dssp             EEECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ecCCCeEEcCCCCEEEEEEcCCCccCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEeCCCCeEEEEEC
Confidence            345667899999999999998753  5789999864 22211   1000      001124577776532 335689999


Q ss_pred             eecCCCCeEEEEEEecCCCc----ceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcC
Q psy15734         93 DVQETDRGWYMCQINTVPMT----SQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRRE  162 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~  162 (314)
                      +++.+|+|.|.|.+.+....    .....|.|..    +|.+.... + ...+.+|+.+.|.|.+.|. |.| .+.|++.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~~  162 (444)
T 1igt_B           85 RLKSEDTAMYYCARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLA-P-VCGDTTGSSVTLGCLVKGYFPEPVTLTWNSG  162 (444)
T ss_dssp             SCCGGGCEEEEEEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEEC-C-CSSCCCSSCEEEEEEEEEEBSSCCEEEEGGG
T ss_pred             CCCHHHCEEEEEEEecCCcccccccCcEEEEecCCCCCCCceeEec-c-cccCCCCCcEEEEEEEcceeCCCcEEEEecC
Confidence            99999999999999765321    2335677763    35444332 1 1224789999999999985 777 9999984


Q ss_pred             CCceee--------c------------------CCeeC--------------------------------------CCeE
Q psy15734        163 DGKAIN--------Y------------------NGELV--------------------------------------PPML  178 (314)
Q Consensus       163 ~~~~~~--------~------------------~~~~~--------------------------------------~p~~  178 (314)
                       +..+.        .                  ++.+.                                      +|.+
T Consensus       163 -~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v  241 (444)
T 1igt_B          163 -SLSSGVHTFPAVLQSDLYTLSSSVTVTSSTWPSQSITCNVAHPASSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSV  241 (444)
T ss_dssp             -TBCTTEEECCCEEETTEEEEEEEEEECSTTTTTSCCEEEEEETTTTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEE
T ss_pred             -CCCCCeEecCccccCCcEEEEEEEEEchhhcCCCeEEEEEEeCCCCcceEEEeccCCCCcccCCccccCCcccCCCceE
Confidence             33210        0                  01000                                      1222


Q ss_pred             -EcCCCcce-eecCccEEEEEEEeecC----CceeEEecCCCeeeecCCceeee-EeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        179 -TIPNQLEG-AFVSQTVELHCHTEAFP----ASLNYWTNEKGDMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       179 -~~~~~~~~-v~~g~~~~l~C~~~g~p----~p~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                       ..++.... +.+|+++.|.|.+.|.|    .+.+.|++++.. +......... ...+.+...+.|.|.+++.+|+|.|
T Consensus       242 ~~~~p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  320 (444)
T 1igt_B          242 FIFPPKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFVNNVE-VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEF  320 (444)
T ss_dssp             EEECCCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEETTEE-CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEE
T ss_pred             EecCCchhheeecCCCcEEEEEEeecccCCCCeEEEEEECCcc-ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcE
Confidence             22333323 57899999999999984    368999997543 3222211111 1222355667999999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEE--EecCCCeeEEEEcc----ccccEeEEEEEeeccC-C-Cccce
Q psy15734        252 RCVAVNALGETDGFIKVYV--NLVDGDIFQIRKMS----RLHMGAYLCIASNGVV-P-SVSHR  306 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V--~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~-~-~~~w~  306 (314)
                      +|.|.|..|.......+.+  .....+.+.+....    ......+.|.|.++++ + .++|.
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  383 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPEDIYVEWT  383 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCCCEEEEE
Confidence            9999999987743333322  22223444433221    1222579999999544 4 78895

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.95  E-value=4.5e-29  Score=209.83  Aligned_cols=241  Identities=16%  Similarity=0.202  Sum_probs=171.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEec-------CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEE
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVE-------NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~-------~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      ...|.|...+..+.+.+|+++.|.|.+.       +.+.+.+.|++++......     .....++....     +.|.|
T Consensus        16 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k~~~~~~~~-----~~~~~~~~~~~-----~~L~i   85 (339)
T 3o4o_C           16 RSCRFRGRHYKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHKNDSARTVP-----GEEETRMWAQD-----GALWL   85 (339)
T ss_dssp             --CEEEEECSCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEESSCCSCCS-----CCSSSCEEEET-----TEEEE
T ss_pred             hhhHhhCcCceEEEEECCccEEEEeccccccccccCCCCceEEEEECCCCcccC-----ccccccEEeeC-----CeEEE
Confidence            4568888889999999999999999997       7788899999965431110     01123443321     27999


Q ss_pred             eeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEE-----ecccCCCceEEEcCCCc
Q psy15734         92 RDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS-----AVGYPEPYVAWRREDGK  165 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-----~~~~p~p~~~W~~~~~~  165 (314)
                      .+++.+|+|.|+|.+.+. +.....+.|.|..++............+.+|+.+.|.|.     +.+.|.+.+.|++ ++.
T Consensus        86 ~~v~~~D~G~Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k-~g~  164 (339)
T 3o4o_C           86 LPALQEDSGTYVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYK-DSL  164 (339)
T ss_dssp             SSBCTTCCEEEECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEE-SSC
T ss_pred             CCCCcccCEEEEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEec-CCe
Confidence            999999999999999765 344556678887776543111123346889999999999     7888999999999 665


Q ss_pred             eeecC----------CeeC------------------------------------------CCeEEcCCCcceeecCccE
Q psy15734        166 AINYN----------GELV------------------------------------------PPMLTIPNQLEGAFVSQTV  193 (314)
Q Consensus       166 ~~~~~----------~~~~------------------------------------------~p~~~~~~~~~~v~~g~~~  193 (314)
                      .+...          +.+.                                          +|.+..++....+.+|+++
T Consensus       165 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v  244 (339)
T 3o4o_C          165 LLDKDNEKFLSVRGTTHLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRL  244 (339)
T ss_dssp             BCCTTCSSEEECTTSSEEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCC
T ss_pred             eCCCCCceeEEcCCcceEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCE
Confidence            55432          0111                                          4566666677788999999


Q ss_pred             EEEEEE---eecC-CceeEEecCCCeee--------ecCCceeeeEeeCCeeeEEEEEEeecCCCCC-eEEEEEEeeCCC
Q psy15734        194 ELHCHT---EAFP-ASLNYWTNEKGDMI--------ITGDDYEDSRLINGYSCHMTLKIRSILSHQF-GSYRCVAVNALG  260 (314)
Q Consensus       194 ~l~C~~---~g~p-~p~~~W~~~~~~~~--------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~-G~Y~C~a~n~~g  260 (314)
                      .|.|.+   .|.| .+.+.|++++..+.        ....++... ..+.....+.|.|.++..+|+ |.|+|.|.|..|
T Consensus       245 ~L~C~~~~~~g~P~~~~v~W~~~g~~~~~~~~~~~~~~~~~~~~~-~~g~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G  323 (339)
T 3o4o_C          245 TIPCKVFLGTGTPLTTMLWWTANDTHIESAYPGGRVTEGPRQEYS-ENNENYIEVPLIFDPVTREDLHMDFKCVVHNTLS  323 (339)
T ss_dssp             CCCCCEEESSSCCSSCEEEEESSSSCSSSSSCSSSCEECCCEECC-CSSSCEEEECCEECSSCCCSCCCCCEEEEEETTE
T ss_pred             EEEEEEECCCCCCCCceEEEEECCeecccccccccceecceEEec-ccCceEEEEEEEEEEechhhcCccEEEEEEeccC
Confidence            999999   8999 88999999754321        111222111 122233445899999999998 999999999999


Q ss_pred             CceeEEEEEEE
Q psy15734        261 ETDGFIKVYVN  271 (314)
Q Consensus       261 ~~~~~~~l~V~  271 (314)
                      .+...+.+.+.
T Consensus       324 ~~~~~~~~~~~  334 (339)
T 3o4o_C          324 FQTLRTTVKEH  334 (339)
T ss_dssp             EECCBCCCCC-
T ss_pred             ceEEEEEhhHh
Confidence            98887766543

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.95  E-value=6.5e-28  Score=200.65  Aligned_cols=233  Identities=17%  Similarity=0.252  Sum_probs=160.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ....+.+.+|+++.|.|.+.+.+ .+.+.|++++.....     ....+.++....     ..|.|.+++.+|+|.|+|.
T Consensus        11 ~~~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~-----~~~~~~~~~~~~-----~~L~i~~v~~~D~G~Y~C~   80 (315)
T 1itb_B           11 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPV-----STEQASRIHQHK-----EKLWFVPAKVEDSGHYYCV   80 (315)
T ss_dssp             CCCCCEEETTSCCCCBCCCCSCCCSSCCCEECTTSCSCS-----CCCTTSSSEECS-----SBEECTTCCGGGCSCCEEC
T ss_pred             CceEEEEcCCCcEEEEeeccCcCCCceEEEEeCCCcCcc-----ccccCCcEeccC-----CeEEECCCChhhCEEEEEE
Confidence            34478899999999999998876 689999996542111     012234444332     2799999999999999999


Q ss_pred             EecC-CCcceeEEEEEEe-CCceeeec-CcceeEEecCceEEEEEEe------cccCCCceEEEcCCCceeecCC-----
Q psy15734        106 INTV-PMTSQKGYLQVVV-PPRILLDR-TSTDVVVREGTEVTLECSA------VGYPEPYVAWRREDGKAINYNG-----  171 (314)
Q Consensus       106 ~~~~-~~~~~~~~l~v~~-~p~~~~~~-~~~~~~~~~g~~~~l~C~~------~~~p~p~~~W~~~~~~~~~~~~-----  171 (314)
                      +.+. +.....+.+.+.. +|.+...+ ......+..|+.+.|.|.+      .+.|.|.+.|++ ++..+....     
T Consensus        81 a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k-~~~~l~~~~~~~~~  159 (315)
T 1itb_B           81 VRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYK-DCKPLLLDNIHFSG  159 (315)
T ss_dssp             CCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEE-TTEECCCCSSSEEE
T ss_pred             EeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEE-CCEECCCccceEee
Confidence            9764 3333333444333 34432211 1123568899999999998      788999999999 666553211     


Q ss_pred             ---ee------------------------------------------CCCeEEcCCCc-ceeecCccEEEEEEEeecCCc
Q psy15734        172 ---EL------------------------------------------VPPMLTIPNQL-EGAFVSQTVELHCHTEAFPAS  205 (314)
Q Consensus       172 ---~~------------------------------------------~~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p  205 (314)
                         .+                                          .+|.+..++.. ..+.+|+++.|.|.+.|.|.|
T Consensus       160 ~~~~L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p  239 (315)
T 1itb_B          160 VKDRLIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSD  239 (315)
T ss_dssp             ETTEEEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTS
T ss_pred             cCceEEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCC
Confidence               00                                          04455444443 468899999999999999999


Q ss_pred             eeEEecCCCeeeecCCceee---eEeeC-----CeeeEEEEEEeecCCCC-CeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        206 LNYWTNEKGDMIITGDDYED---SRLIN-----GYSCHMTLKIRSILSHQ-FGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       206 ~~~W~~~~~~~~~~~~~~~~---~~~~~-----~~~~~s~L~i~~~~~~d-~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .+.|+++ +..+........   .....     .....+.|.|.++..+| +|.|+|.|.|..|....++.|.|.
T Consensus       240 ~i~W~~~-g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~~G~Y~C~a~N~~G~~~~~~~l~v~  313 (315)
T 1itb_B          240 IAYWKWN-GSVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIYP  313 (315)
T ss_dssp             EEEEEET-TEECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGGGGTSCEEEEEECTTCCEEEEEEEECC
T ss_pred             eeEEEEC-CEECCcccccccccceeeeccCCCceeEEEEEEEEeecCHHHcCCceEEEEecCCCceeEEEEEEec
Confidence            9999996 444433322111   00010     12345699999999999 999999999999999999988764

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.95  E-value=1.9e-26  Score=178.54  Aligned_cols=189  Identities=21%  Similarity=0.302  Sum_probs=128.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+.       ..+.++.+.........|.|.+++.+|+
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQG-KEII-------ADGLKYRIQEFKGGYHQLIIASVTDDDA   74 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETT-EECC-------CCSSSEEEEEETTTEEEEEECSCCGGGC
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECC-EECc-------cCCCcEEEEEcCCCEEEEEECcCCHHhC
Confidence            5789999999999999999999999998888999999954 3221       2234555544333344899999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCceeeec---CcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRILLDR---TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~---~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |.|+|.+.+. +.....+.|.|..+|.+....   .+....+.+|+.+.|.|.+.++|.|.+.|++              
T Consensus        75 G~Y~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--------------  140 (197)
T 2j8h_A           75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK--------------  140 (197)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEE--------------
T ss_pred             EEEEEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEE--------------
Confidence            9999999765 333555667776655442211   0122334445555555555555555555554              


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEee-cCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS-ILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~~d~G~Y~C~  254 (314)
                                                          + +..+....++.+....+    .+.|.|.+ +..+|+|.|+|.
T Consensus       141 ------------------------------------~-~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~  179 (197)
T 2j8h_A          141 ------------------------------------G-QDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDAGFYVVC  179 (197)
T ss_dssp             ------------------------------------S-SCEECSSSSCEEEECSS----EEEEECTTCCCGGGCEEEEEE
T ss_pred             ------------------------------------C-CEEeecCCCEEEEEcCC----ceEEEEeCCCCcccCEeEEEE
Confidence                                                3 33333333333322111    24899999 999999999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      |.|..|.....+.|.|.
T Consensus       180 a~N~~g~~~~~~~l~V~  196 (197)
T 2j8h_A          180 AKNRFGIDQKTVELDVA  196 (197)
T ss_dssp             EEETTEEEEEEEEEEEE
T ss_pred             EEeCCCcEeEEEEEEEe
Confidence            99999999889888875

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=9.2e-27  Score=203.18  Aligned_cols=224  Identities=16%  Similarity=0.126  Sum_probs=138.0

Q ss_pred             ccCCCCCcee-cCCcceEEEcCCcEEEEEEecCCCce---EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEE
Q psy15734         16 CEKPDMPRFA-EPVANVTATVGKEALMACVVENLREY---KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        16 ~~~~~~p~~~-~~~~~~~v~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      +.+..+|.+. ..+....+.+|+++.|.|.+.+.+++   .+.|++++ ..+....        .    ......+.|.|
T Consensus        80 l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k~g-~~l~~~~--------~----~~~~~~~~L~i  146 (450)
T 1z7z_I           80 LTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGE-KELKREP--------A----VGEPAEVTTTV  146 (450)
T ss_dssp             EEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT-EEEEEEE--------C----CTTTEEEEEEE
T ss_pred             EEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCCcCcEEEEeeCC-EEeeccc--------c----cccccceEEEE
Confidence            3333456655 46677889999999999999987776   99999954 4332211        0    00122347999


Q ss_pred             eeecCCCCeEEEEEEecCCC-cc--------eeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-C--CCceEE
Q psy15734         92 RDVQETDRGWYMCQINTVPM-TS--------QKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-P--EPYVAW  159 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~-~~--------~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p--~p~~~W  159 (314)
                      .+++.+|+|.|+|.+.|... ..        ....|.|...|...... .....+.+|+.+.|.|.+.+. |  .+.+.|
T Consensus       147 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~-~~~~~v~~G~~v~l~C~~~g~~P~~~~~~~W  225 (450)
T 1z7z_I          147 LVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQL-VSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (450)
T ss_dssp             ECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEE-ECCSEEETTSEEEEEEEEESCTTGGGCEEEE
T ss_pred             EeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEe-cCceeEEeCCcEEEEEEeeCCCCCCceEEEE
Confidence            99999999999999976422 11        22344444331111000 011568899999999999998 7  689999


Q ss_pred             EcCCCceee---------------------cCC--eeC----------------------CCeEEcCCCcceeecCccEE
Q psy15734        160 RREDGKAIN---------------------YNG--ELV----------------------PPMLTIPNQLEGAFVSQTVE  194 (314)
Q Consensus       160 ~~~~~~~~~---------------------~~~--~~~----------------------~p~~~~~~~~~~v~~g~~~~  194 (314)
                      ++ ++..+.                     ..+  .+.                      +|.+...  ...+.+|+++.
T Consensus       226 ~~-~~~~~~~~~~~~~~~~~~~~~~~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~~~--~~~v~~G~~v~  302 (450)
T 1z7z_I          226 AL-GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVILT--KPEVSEGTEVT  302 (450)
T ss_dssp             EE-TTEECCCEEEEETTEEEEEEEEECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEES--CSEEETTCEEE
T ss_pred             eC-CCEeCCceEEecCCceeEEEEEEeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEecC--CeeEeCCCcEE
Confidence            98 443221                     111  111                      3444433  34788999999


Q ss_pred             EEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC-C---ceeEEEEEE
Q psy15734        195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG-E---TDGFIKVYV  270 (314)
Q Consensus       195 l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g-~---~~~~~~l~V  270 (314)
                      |.|.+.  |.|.+.|  + +..+....       ..     ..|.|.++..+|+|.|+|.|.|..+ .   ....+.|.|
T Consensus       303 l~C~~~--p~p~i~W--~-g~~~~~~~-------~~-----~~L~i~~~~~~d~G~Y~C~a~n~~~g~~~~~~~~~~l~V  365 (450)
T 1z7z_I          303 VKCEAH--PRAKVTL--N-GVPAQPLG-------PR-----AQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRV  365 (450)
T ss_dssp             EEEEC---------------------C-------CC-----CCEEEECCGGGTTCEEEEEEEEEETTEEEEEEEEEECEE
T ss_pred             EEEecC--CCCEeEE--C-CEEcCCCC-------ce-----EEEEEecCcccCCceEEEEEEcCCCCcccccceeEEEEE
Confidence            999998  9999999  3 43331111       11     2899999999999999999997665 2   346677777


Q ss_pred             Eec
Q psy15734        271 NLV  273 (314)
Q Consensus       271 ~~~  273 (314)
                      ..+
T Consensus       366 ~~~  368 (450)
T 1z7z_I          366 LYG  368 (450)
T ss_dssp             EEE
T ss_pred             ecC
Confidence            543

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=99.95  E-value=1.4e-25  Score=201.99  Aligned_cols=276  Identities=16%  Similarity=0.173  Sum_probs=180.3

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCc---eEEEEEEcCce----eEEEeee-eeeecCcCEEEEeC-CceeEEEEEeeecC
Q psy15734         26 EPVANVTATVGKEALMACVVENLRE---YKVAWVKMITQ----TILSIHH-KVVTQNKRVSITFN-DHRSWFLHLRDVQE   96 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~---~~v~W~~~~~~----~~~~~~~-~~~~~~~~~~~~~~-~~~~~~L~i~~~~~   96 (314)
                      ..|..+.+.+|+++.|.|.+.+.+.   ..+.|+|++..    .+..... ......+|+.+... ......|.|.+++.
T Consensus         5 ~~P~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~g~~~L~I~~v~~   84 (585)
T 2ocw_A            5 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   84 (585)
T ss_pred             cCcceeEEecCCcEEEEEeCCCCcCCCcccEEEEeCCCCCCceEEEECCCcccceeeceEEEEecCCCCEEEEEECCCCc
Confidence            4566789999999999999987643   48999996542    1211100 00112346666543 23345799999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CCCceEEEcCCCce--------
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKA--------  166 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~~~W~~~~~~~--------  166 (314)
                      +|+|.|+|.+.+. +..+..+.|.|..+|.+...  +....+.+|+.+.|.|.+.+. |.+.+.|++.++..        
T Consensus        85 ~D~G~Y~C~~~n~~~~~~~~~~l~V~~~p~~~~~--~~~~~v~~G~~v~l~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~  162 (585)
T 2ocw_A           85 DDSGRYKCGLGINSRGLSFDVSLEVSQGPGLLND--TKVYTVDLGRTVTINCPFKTENAQKRKSLYKQIGLYPVLVIDSS  162 (585)
T ss_pred             ccCEEEEEEcccCCCCceEEEEEEEecCccccCC--CccEEEEcCCCEEEEEEecCCCCCccEEEEECCCCCceEEecCC
Confidence            9999999999654 45566788889888877543  466778999999999999865 45789999954321        


Q ss_pred             ------------eecCC------eeC-------------------------CCeEE---cCCCcceeecCccEEEEEEEe
Q psy15734        167 ------------INYNG------ELV-------------------------PPMLT---IPNQLEGAFVSQTVELHCHTE  200 (314)
Q Consensus       167 ------------~~~~~------~~~-------------------------~p~~~---~~~~~~~v~~g~~~~l~C~~~  200 (314)
                                  +...+      .+.                         ...+.   .++....+.+|+++.|.|.+ 
T Consensus       163 ~~~~~~~~~r~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~~~~~~G~~v~l~C~~-  241 (585)
T 2ocw_A          163 GYVNPNYTGRIRLDIQGTGQLLFSVVINQLRLSDAGQYLCQAGDDSNSNKKNADLQVLKPEPELVYEDLRGSVTFHCAL-  241 (585)
T ss_pred             cccCccccCcEEEEeccCCCcEEEEEEccCChhHCeEEEEEeccCCccccceEEEEEccCCCceeEEcCCCcEEEEEEc-
Confidence                        00111      111                         11111   23455667899999999998 


Q ss_pred             ecCC---ceeEEe-cCCC--eeeec---------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce--
Q psy15734        201 AFPA---SLNYWT-NEKG--DMIIT---------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD--  263 (314)
Q Consensus       201 g~p~---p~~~W~-~~~~--~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~--  263 (314)
                      +.|.   +.+.|+ +++.  ..+..         ..++.+.  .........|.|.++..+|+|.|+|.|.|. |...  
T Consensus       242 ~~~~~~~~~~~w~~~~g~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~g~~~L~i~~v~~~d~G~Y~C~a~n~-g~~~~~  318 (585)
T 2ocw_A          242 GPEVANVAKFLCRQSSGENCDVVVNTLGKRAPAFEGRILLN--PQDKDGSFSVVITGLRKEDAGRYLCGAHSD-GQLQEG  318 (585)
T ss_pred             CCCCCCceEEEEEeCCCCCcceEEeCCCcCCcccCCceEee--ccCCCcEEEEEEccCChhhCEEEEEEEEcC-CCcccc
Confidence            4444   677886 6542  12222         1122111  110112237999999999999999999995 4443  


Q ss_pred             ---eEEEEEEEecCCCeeEE--EEccccccEeEEEEEeeccCCCc----cceE
Q psy15734        264 ---GFIKVYVNLVDGDIFQI--RKMSRLHMGAYLCIASNGVVPSV----SHRI  307 (314)
Q Consensus       264 ---~~~~l~V~~~~~~~~~~--~~~~~~~~g~~~C~a~~~~~~~~----~w~v  307 (314)
                         ..+.|.|..++.-....  ..+..++...+.|.+.+.+.|.+    .|..
T Consensus       319 ~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i~~w~~W~~  371 (585)
T 2ocw_A          319 SPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSIKYWCLWEG  371 (585)
T ss_pred             CceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccEEEEEEEEc
Confidence               77888887664322111  22334555679999999999987    6754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.95  E-value=1.7e-26  Score=193.31  Aligned_cols=228  Identities=15%  Similarity=0.194  Sum_probs=155.4

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC---------CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL---------REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~---------~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      ...+...+.+.+|+++.|.|.+.+.         +.+.+.|++++... ..        ..+. . .    .+.|.|.++
T Consensus        32 ~~~~~~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k~~~~~-~~--------~~~~-~-~----~~~L~i~~v   96 (329)
T 3oq3_B           32 MFGGTMNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEKIGKTR-RP--------LNRR-V-K----NGDLWIANY   96 (329)
T ss_dssp             EEEEEEEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEECSSSC-EE--------CSTT-E-E----TTEEEESSC
T ss_pred             ccCCcceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEECCCCc-cc--------cCce-e-e----cceEEEcCC
Confidence            3344567789999999999999763         55799999965432 11        1122 1 1    227999999


Q ss_pred             cCCCCe-EEEEEEecCC-CcceeEEEEE-EeCCceeeecCcceeEEecCceEEEEEEecccC-CCceEEEcCCCceeecC
Q psy15734         95 QETDRG-WYMCQINTVP-MTSQKGYLQV-VVPPRILLDRTSTDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAINYN  170 (314)
Q Consensus        95 ~~~d~G-~Y~C~~~~~~-~~~~~~~l~v-~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p~~~W~~~~~~~~~~~  170 (314)
                      +.+|+| .|+|.+.+.. .......+.+ ..+|.+....  ....+.+|+.+.|.|.+.+.| .|.+.|++ ++..+...
T Consensus        97 ~~~D~Gs~Y~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~--~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k-~~~~l~~~  173 (329)
T 3oq3_B           97 TSNDSHRRYLCTVTTKNGDCVQGIVRSHIRKPPSCIPET--YELGTHDKYGIDLYCGILYAKHYNNITWYK-NNQELIID  173 (329)
T ss_dssp             CGGGGGCCEEEEEECTTSCEEEEEEEEEECCCCSCEEEE--EETTSSTTTCEEEECCCCSCCCCCEEEEEE-TTEECCCS
T ss_pred             ChHhCCCcEEEEEEeCCCceeeEEEEEEEcCCCcEeccc--cceEEeCCCcEEEEeccCCCCCCceEEEEE-CCccCCCC
Confidence            999999 9999998754 3222222233 3345433321  223356799999999999999 89999999 55554211


Q ss_pred             --------CeeC---------------------------------------CC----eEEcCCCcceeecCccEEEEEEE
Q psy15734        171 --------GELV---------------------------------------PP----MLTIPNQLEGAFVSQTVELHCHT  199 (314)
Q Consensus       171 --------~~~~---------------------------------------~p----~~~~~~~~~~v~~g~~~~l~C~~  199 (314)
                              +.+.                                       +|    .+. .+....+.+|+++.|.|.+
T Consensus       174 ~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~  252 (329)
T 3oq3_B          174 GTKYSQSGQNLIIHNPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTA  252 (329)
T ss_dssp             SSSEEEETTEEEECSCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEE
T ss_pred             CceEecCCCEEEEeecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEE
Confidence                    0000                                       11    111 3445678899999999999


Q ss_pred             eecC---Cc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe-EEEEEEeeCCCCceeEEEEEE
Q psy15734        200 EAFP---AS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG-SYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       200 ~g~p---~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G-~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|   .| .+.|++++..+..............+....+.|.|.++..+|+| .|+|.|.|..|....++.|.|
T Consensus       253 ~g~p~~~~~i~v~W~~~g~~i~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~~Y~C~a~N~~G~~~~~~~l~v  328 (329)
T 3oq3_B          253 VSTSLLVDDVLIDWENPSGWIIGLDFGVYSILTSSGGITEATLYFENVTEEYIGNTYTCRGHNYYFDKTLTTTVVL  328 (329)
T ss_dssp             EETTCCTTCCEEEEECTTSCBCCBCSSEEEEEEEETTEEEEEEEESSCCGGGTTCEEEEEEECSSCEEEEEEEEEE
T ss_pred             EECCCCCCCcEEEEEECCeeeeccCCceeeeecccCceeEeEEEEEeccHHHCCCcEEEEEEecCCceEEEEEEEe
Confidence            9998   77 88999986553333332221111111124569999999999999 999999999999988888766

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=99.95  E-value=2.1e-26  Score=196.69  Aligned_cols=224  Identities=21%  Similarity=0.312  Sum_probs=161.2

Q ss_pred             CCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .+..+.+.+|+++.|.|.+. +.+.+.+.|++++....       ...+.+......   .+.|.|.+++.+|+|.|+|.
T Consensus       107 ~~~~~~v~~G~~v~l~C~~~~~~p~~~i~W~~~~~~~~-------~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~  176 (382)
T 1cs6_A          107 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-------IPADGRRFVSQT---TGNLYIAKTEASDLGNYSCF  176 (382)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB-------CCCCSSEEECTT---TCCEEESSCCGGGCEEEEEE
T ss_pred             CCCceEEecCCcEEEEeCCCCCCCCcEEEEEECCCccc-------cccCceEEEecC---ceEEEEEeeCcccCeeEEEE
Confidence            35678899999999999964 45778999999653311       112233322211   13699999999999999999


Q ss_pred             EecCC-Cc-----ceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec----
Q psy15734        106 INTVP-MT-----SQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY----  169 (314)
Q Consensus       106 ~~~~~-~~-----~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~----  169 (314)
                      +.+.. ..     +....|.+..      +|.+... .+....+.+|+.+.|.|.+.+.|.|.+.|++.+ ..+..    
T Consensus       177 ~~n~~g~~~~~~~s~~~~l~v~~~~~~~~~P~~~~~-~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~~~-~~~~~~~~~  254 (382)
T 1cs6_A          177 ATSHIDFITKSVFSKFSQLSLAAEDARQYAPSIKAK-FPADTYALTGQMVTLECFAFGNPVPQIKWRKLD-GSQTSKWLS  254 (382)
T ss_dssp             EEEEETTEEEEEECCCEEEEEESCCCCCEEEEEEEC-CCSEEEEETTCCEEEECEEEEESCCEEEEEECC-SCCSCCCSB
T ss_pred             EEEccccccceeEccceeeccchhhcccCCCceecc-CCCceEEeCCCeEEEEEEEccCCCCEEEEEECC-cccccEEec
Confidence            96542 11     1223444432      2333332 245677889999999999999999999999843 33321    


Q ss_pred             -CCeeC---------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe
Q psy15734        170 -NGELV---------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD  215 (314)
Q Consensus       170 -~~~~~---------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~  215 (314)
                       ...+.                                 +|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++ +.
T Consensus       255 ~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~~-g~  333 (382)
T 1cs6_A          255 SEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQ  333 (382)
T ss_dssp             SSSEEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEET-TE
T ss_pred             CCcEEEEccCChhhCEEEEEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEEEEEEC-CE
Confidence             11110                                 66666667777899999999999999999999999997 44


Q ss_pred             eeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        216 MIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       216 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .+....++.+   .++     .|.|.++..+|+|.|+|.|.|..|....++.|.|.
T Consensus       334 ~~~~~~~~~~---~~~-----~L~i~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~  381 (382)
T 1cs6_A          334 PLASQNRIEV---SGG-----ELRFSKLVLEDSGMYQCVAENKHGTVYASAELTVQ  381 (382)
T ss_dssp             ECCCCSSEEE---ETT-----EEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             ECCCCceEEE---ECC-----EEEECcCCcccCEEEEEEEEeCCCeEEEEEEEEEe
Confidence            4444444332   234     89999999999999999999999999999998885

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.95  E-value=7.3e-26  Score=197.49  Aligned_cols=248  Identities=17%  Similarity=0.147  Sum_probs=168.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEE-----EEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKV-----AWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v-----~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      |...|....+.+|+++.|.|.+.+ +.+.+     .|+|++..          ..+.+.         ..|.|.+++. |
T Consensus         2 i~~~P~~~~v~~G~~v~L~C~~~g-p~p~~~~~~~~w~k~~~~----------~~~~~~---------~~l~i~~v~~-d   60 (450)
T 1z7z_I            2 TSVSPSKVILPRGGSVLVTCSTSC-DQPMLLGIETPLPKKELL----------LPGNNR---------KVYELSNVQE-D   60 (450)
T ss_dssp             CEEESSEEEEETTEEEEEEEECCS-SCCCEEEECSSSCEEECC----------SSTTTE---------EEEEEEEECS-C
T ss_pred             cccCCCceEEecCCcEEEEEEccC-CCcccccccceeeecceE----------ecCCCc---------eEEEEEeccc-C
Confidence            345667889999999999999998 77787     89885321          112221         2699999987 9


Q ss_pred             CeEEEEEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC---ceEEEcCCCceeecCC---
Q psy15734         99 RGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP---YVAWRREDGKAINYNG---  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p---~~~W~~~~~~~~~~~~---  171 (314)
                      +| |+|.+.+.+ ..+..+.|.|..+|.+.... +....+.+|+.+.|.|.+.+.|++   .+.|++ ++..+....   
T Consensus        61 ~g-Y~C~a~~~~~~~~~~~~l~V~~~P~~~~~~-~~~~~v~~G~~v~L~C~~~g~~~~~~~~v~W~k-~g~~l~~~~~~~  137 (450)
T 1z7z_I           61 SQ-PMCYSNCPDGQSTAKTFLTVYWTPERVELA-PLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPAVG  137 (450)
T ss_dssp             BC-CEEEEEETTEEEEEECEEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE-TTEEEEEEECCT
T ss_pred             Ce-eEEEEeCCCCcceeEEEEEEEeCCCcceec-CCCceEeeCCeEEEEEEecCCCCCcCcEEEEee-CCEEeecccccc
Confidence            99 999997543 34556788888888776443 345678899999999999998887   899999 666554221   


Q ss_pred             -----eeC---------------------------------CCeEE------cCCCc---ceeecCccEEEEEEEeec-C
Q psy15734        172 -----ELV---------------------------------PPMLT------IPNQL---EGAFVSQTVELHCHTEAF-P  203 (314)
Q Consensus       172 -----~~~---------------------------------~p~~~------~~~~~---~~v~~g~~~~l~C~~~g~-p  203 (314)
                           .+.                                 +..+.      .++..   ..+.+|+.+.|.|.+.|. |
T Consensus       138 ~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~~~s~~~~l~v~~~~~~~p~~~~~~~v~~G~~v~l~C~~~g~~P  217 (450)
T 1z7z_I          138 EPAEVTTTVLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFP  217 (450)
T ss_dssp             TTEEEEEEEECCSSCSSCEEEEEEEEECGGGTSCEEEEECCCEECEECCCCSSCCEEECCSEEETTSEEEEEEEEESCTT
T ss_pred             cccceEEEEEeeccccCceEEEEEEcccCCCCceEEeeccCccceeeeccCCCCCEecCceeEEeCCcEEEEEEeeCCCC
Confidence                 000                                 01111      11222   567899999999999998 7


Q ss_pred             --CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe--EEEEEEeeCCCCceeEEEEEEEecCCCeeE
Q psy15734        204 --ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG--SYRCVAVNALGETDGFIKVYVNLVDGDIFQ  279 (314)
Q Consensus       204 --~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G--~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~  279 (314)
                        .+.+.|++++..+..   +  .....+.  ....+.+ ++..+|+|  .|+|.|.|..|.....+.|.|...+.+.+.
T Consensus       218 ~~~~~~~W~~~~~~~~~---~--~~~~~~~--~~~~~~~-~v~~~d~G~~~Y~C~a~n~~g~~~~~~~l~V~~~~~p~i~  289 (450)
T 1z7z_I          218 VSEAQVHLALGDQRLNP---T--VTYGNDS--FSAKASV-SVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVI  289 (450)
T ss_dssp             GGGCEEEEEETTEECCC---E--EEEETTE--EEEEEEE-ECCGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEE
T ss_pred             CCceEEEEeCCCEeCCc---e--EEecCCc--eeEEEEE-EeEhhhCCcEEEEEEEccCCccEEEEEEEEEecCCCCeEe
Confidence              789999997543221   1  2222221  1112223 78999999  999999999999988999999987666665


Q ss_pred             EE--EccccccEeEEEEEeeccCCCccc
Q psy15734        280 IR--KMSRLHMGAYLCIASNGVVPSVSH  305 (314)
Q Consensus       280 ~~--~~~~~~~g~~~C~a~~~~~~~~~w  305 (314)
                      ..  .+..++...+.|.+.  +.|.++|
T Consensus       290 ~~~~~v~~G~~v~l~C~~~--p~p~i~W  315 (450)
T 1z7z_I          290 LTKPEVSEGTEVTVKCEAH--PRAKVTL  315 (450)
T ss_dssp             ESCSEEETTCEEEEEEEC----------
T ss_pred             cCCeeEeCCCcEEEEEecC--CCCEeEE
Confidence            43  233445567999998  7889999

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.94  E-value=1.1e-25  Score=174.21  Aligned_cols=189  Identities=15%  Similarity=0.311  Sum_probs=131.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+        ....++.+..++. ...|.|.+++.+|
T Consensus         5 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~--------~~~~~~~~~~~~~-~~~L~i~~~~~~d   74 (197)
T 3lcy_A            5 GEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRFG-KEL--------IQSRKYKMSSDGR-THTLTVMTEEQED   74 (197)
T ss_dssp             CEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEETT-EEE--------CCCSSEEEEESSS-EEEEEEECCSGGG
T ss_pred             CCCCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEECC-EEC--------CCCccEEEEeCCC-EEEEEEecCCccC
Confidence            45688888899999999999999999988888899999954 322        2344555544432 3479999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeee-cCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLD-RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~-~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      +|.|+|.+.+. +.......|.|..+|.+... ..+....+..|+.+.|.|.+.++|.|.+.|++ ++            
T Consensus        75 ~G~Y~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~-~~------------  141 (197)
T 3lcy_A           75 EGVYTCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWFH-GQ------------  141 (197)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEEE-TT------------
T ss_pred             CEEEEEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEeE-CC------------
Confidence            99999999764 44455566777665554321 11234455666667777766666666666666 32            


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC-CCCeEEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS-HQFGSYRCVA  255 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a  255 (314)
                                                            ..+....++.+.....    .+.|.|.++.. +|+|.|+|.|
T Consensus       142 --------------------------------------~~~~~~~~~~~~~~~~----~~~L~i~~~~~~~d~G~Y~C~a  179 (197)
T 3lcy_A          142 --------------------------------------KLLQNSENITIENTEH----YTHLVMKNVQRKTHAGKYKVQL  179 (197)
T ss_dssp             --------------------------------------EECCCCSSEEEEECSS----EEEEEESSCCHHHHCEEEEEEE
T ss_pred             --------------------------------------EECCCCCceEEEEcCC----EEEEEEccccchhhCceEEEEE
Confidence                                                  2222222222221111    14899999995 8999999999


Q ss_pred             eeCCCCceeEEEEEEEe
Q psy15734        256 VNALGETDGFIKVYVNL  272 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~  272 (314)
                      .|..|.....+.|.|..
T Consensus       180 ~n~~g~~~~~~~l~V~~  196 (197)
T 3lcy_A          180 SNVFGTVDAILDVEIQD  196 (197)
T ss_dssp             ECSSCEEEEEEEEEEEC
T ss_pred             EcCcCceEEEEEEEEec
Confidence            99999999999888864

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.94  E-value=1e-25  Score=173.98  Aligned_cols=186  Identities=24%  Similarity=0.380  Sum_probs=126.0

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|..++..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +..      ....++.+...+ ....|.|.+++.+|+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~~------~~~~~~~~~~~~-~~~~L~i~~~~~~d~   75 (194)
T 2a38_A            4 QAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQV-IST------STLPGVQISFSD-GRAKLTIPAVTKANS   75 (194)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSB-CCT------TTSTTCEEEEET-TEEEEEESSCCGGGC
T ss_pred             CCCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEE-ccc------ccCCceEEEeCC-CEEEEEECCCCcccC
Confidence            468888889999999999999999998888889999995432 211      111233333322 234799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |.|+|.+.+. +.......|.|..   +|.+...  +....+..|+.+.|.|.+.++|.|.+.|++ ++           
T Consensus        76 G~Y~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~-----------  141 (194)
T 2a38_A           76 GRYSLKATNGSGQATSTAELLVKAETAPPNFVQR--LQSMTVRQGSQVRLQVRVTGIPTPVVKFYR-DG-----------  141 (194)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCCEEEEEEEC--CCCEEECTTEEEEEEEEEEEESCCEEEEEE-TT-----------
T ss_pred             EEEEEEEEcCCceEeEEEEEEEccCCCCCEEEeC--CccEEEcCCCEEEEEEEEEEecCCeEEEEE-CC-----------
Confidence            9999999765 3334445666663   3333322  234455666666666666666666666666 32           


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                                                             ..+....++.+.....    .++|.|.++..+|+|.|+|.|
T Consensus       142 ---------------------------------------~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~a  178 (194)
T 2a38_A          142 ---------------------------------------AEIQSSLDFQISQEGD----LYSLLIAEAYPEDSGTYSVNA  178 (194)
T ss_dssp             ---------------------------------------EECCCSSSEEEEEETT----EEEEEEEEECGGGCEEEEEEE
T ss_pred             ---------------------------------------EECCCCCcEEEEEcCC----EEEEEECCCChhcCeEEEEEE
Confidence                                                   2222233333221111    238999999999999999999


Q ss_pred             eeCCCCceeEEEEEE
Q psy15734        256 VNALGETDGFIKVYV  270 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V  270 (314)
                      .|..|.....+.|.|
T Consensus       179 ~n~~g~~~~~~~l~V  193 (194)
T 2a38_A          179 TNSVGRATSTAELLV  193 (194)
T ss_dssp             EETTEEEEEEEEEEE
T ss_pred             EeCCCceEEEEEEEE
Confidence            999999988888877

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.94  E-value=3e-25  Score=173.96  Aligned_cols=195  Identities=20%  Similarity=0.286  Sum_probs=129.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC-C
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE-T   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~-~   97 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+       .....++.+.........|.|.+++. +
T Consensus         4 ~~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~-~~~-------~~~~~~~~~~~~~~~~~~L~i~~v~~~~   75 (212)
T 2yd1_A            4 AHPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNG-KKV-------SGTQSRYTVLEQPGGISILRIEPVRAGR   75 (212)
T ss_dssp             -CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETT-EEC-------CTTSTTEEEEEETTTEEEEEESSCCTTT
T ss_pred             CCCCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECC-EEC-------CCCcceeEEEEcCCCeEEEEEEecCCCC
Confidence            46799999999999999999999999998888899999954 322       12345666554433445899999999 9


Q ss_pred             CCeEEEEEEecCC-C-cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734         98 DRGWYMCQINTVP-M-TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus        98 d~G~Y~C~~~~~~-~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |+|.|+|.+.+.. . .+..+.|.|..++....                                             .+
T Consensus        76 d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~---------------------------------------------~~  110 (212)
T 2yd1_A           76 DDAPYECVAENGVGDAVSADATLTIYEGDKTPA---------------------------------------------GF  110 (212)
T ss_dssp             TCSEEEEEEECSSSCEEEEEEEEEEECTTCSCT---------------------------------------------TC
T ss_pred             cCceEEEEEEeCCCCeEEeeEEEEEecccCCCC---------------------------------------------CC
Confidence            9999999997653 3 35556677765421100                                             00


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+....+..|+.+.|.|.+.|.|.|.+.|++++..+.....++.   ..++     .|.|.++..+|+|.|+|.|
T Consensus       111 p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~~~~~~~~~~~---~~~~-----~L~i~~v~~~d~G~Y~C~a  182 (212)
T 2yd1_A          111 PVITQGPGTRVIEVGHTVLMTCKAIGNPTPNIYWIKNQTKVDMSNPRYS---LKDG-----FLQIENSREEDQGKYECVA  182 (212)
T ss_dssp             CEEEECCCCEEEETTCCEEECCEEECSSCCEEEEEETTEECCTTSTTEE---EETT-----EEEECSCCGGGCEEEEEEE
T ss_pred             CeeEeCCCceEeecCCeEEEEEEeccCCCCeEEEEECCeEcccCCCeEE---ccCC-----eEEEccCChhhCEEEEEEe
Confidence            1111112222344555555555555555555555554332222222221   2334     9999999999999999999


Q ss_pred             eeCCCCceeE-EEEEEEecC
Q psy15734        256 VNALGETDGF-IKVYVNLVD  274 (314)
Q Consensus       256 ~n~~g~~~~~-~~l~V~~~~  274 (314)
                      .|..|..... +.|.|....
T Consensus       183 ~N~~G~~~s~~~~l~V~~~~  202 (212)
T 2yd1_A          183 ENSMGTEHSKATNLYVKVRR  202 (212)
T ss_dssp             EETTEEEECCCEEEEEEC--
T ss_pred             ecCCCceeEEEEEEEEEecc
Confidence            9999988654 788887664

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.94  E-value=4.1e-26  Score=199.48  Aligned_cols=276  Identities=15%  Similarity=0.196  Sum_probs=166.7

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ce---eEEEeee------eeeecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQ---TILSIHH------KVVTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~---~~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.. +.   .+.....      ......+|+.+..+. ...+.|.|.+
T Consensus         6 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   85 (457)
T 1hzh_H            6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (457)
T ss_dssp             ECCCEEECTTCCEEECEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCceEEcCCCCEEEEEEecCccccCcEEEEEEeCCCCCcEEEEEEecCCCceecCccccCceEEEEeCCCCEEEEEECC
Confidence            45568899999999999998765  6789999853 21   1111100      001124577776542 3456899999


Q ss_pred             ecCCCCeEEEEEEecCCC-------------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CC-
Q psy15734         94 VQETDRGWYMCQINTVPM-------------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-  154 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~-------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-  154 (314)
                      ++.+|+|.|+|.+.+...             ......|.|..    +|.+....  ....+.+|+.+.|.|.+.+. |. 
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~  163 (457)
T 1hzh_H           86 LRSADTAVYYCARVGPYSWDDSPQDNYYMDVWGKGTTVIVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEP  163 (457)
T ss_dssp             CCGGGCEEEEEEECCCCCSSCCTTTTCSCCBCCCCEEEEECSCCCBCCEEEEEC--CCSCCCTTCCEEEEEEEESBBSCC
T ss_pred             CCcccCEEEEEEEecCCccccccccccccceECCcEEEEecCCCCCCCeEEecC--ccccccCCCcEEEEEEEeEEeCCC
Confidence            999999999999976532             22345677765    45554432  22235789999999999987 65 


Q ss_pred             CceEEEcCCCcee---------ecCC------------------eeC---------------------------------
Q psy15734        155 PYVAWRREDGKAI---------NYNG------------------ELV---------------------------------  174 (314)
Q Consensus       155 p~~~W~~~~~~~~---------~~~~------------------~~~---------------------------------  174 (314)
                      +.+.|++ ++..+         ..++                  .+.                                 
T Consensus       164 ~~v~W~k-~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~  242 (457)
T 1hzh_H          164 VTVSWNS-GALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAP  242 (457)
T ss_dssp             CEEEETT-TTBCTTEEEEEEEECTTSCEEEEEEEEECSGGGGTSCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCC
T ss_pred             eEEEEEe-CCEeccceEcCceECCCCCEEEEEEEEecccccCCceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCc
Confidence            7999998 44221         0111                  000                                 


Q ss_pred             ----CCeE-EcCCCcce-eecCccEEEEEEEeecCCc----eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeec
Q psy15734        175 ----PPML-TIPNQLEG-AFVSQTVELHCHTEAFPAS----LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSI  243 (314)
Q Consensus       175 ----~p~~-~~~~~~~~-v~~g~~~~l~C~~~g~p~p----~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~  243 (314)
                          +|.+ ..++.... +.+|+++.|.|.+.|.|++    .+.|++++..+ ............++ +...+.|.|...
T Consensus       243 ~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~i~W~k~~~~~-~~~~~~~~~~~~~g~~~~~~~l~i~~~  321 (457)
T 1hzh_H          243 ELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEV-HNAKTKPREEQYNSTYRVVSVLTVLHQ  321 (457)
T ss_dssp             CCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCEEEEEETTEEE-CCCEEEEEEECTTSCEEEEEEECCCHH
T ss_pred             cccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceEEEEEeCCccc-cccccccceecCCCcEEEEEEEEECHH
Confidence                1222 22222222 5679999999999998653    89999975433 22111111112222 333345555444


Q ss_pred             CCCCCeEEEEEEeeCCCCceeEEEEEE--EecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        244 LSHQFGSYRCVAVNALGETDGFIKVYV--NLVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V--~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ..+|+|.|+|.|.|..+.......+.+  .....+.+.+....    ......+.|.|.+++++  .+.|.
T Consensus       322 d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~~~~v~W~  392 (457)
T 1hzh_H          322 DWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWE  392 (457)
T ss_dssp             HHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             HccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeEECCCCEEEEE
Confidence            445599999999988665544433332  22223444433211    12225799999997665  78885

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.94  E-value=1.1e-24  Score=191.41  Aligned_cols=276  Identities=16%  Similarity=0.193  Sum_probs=171.2

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-cee---EEEeee------eeeecCcCEEEEeCC-ceeEEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQT---ILSIHH------KVVTQNKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~---~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i   91 (314)
                      +.++..+.+.+|++++|.|.+.+.+  ...+.|||.. +..   +.....      ......+|+.+..+. ...++|.|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   84 (475)
T 1iga_A            5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (475)
T ss_pred             eccCCcEEEeCCCCEEEEEEecCCCCCCceEEEEEeCCCCCcEEEEEEecCCCceecCcccCCceEEEEcCCCCeEEEEE
Confidence            4567788999999999999997653  5789999964 211   111100      001124577766542 34468999


Q ss_pred             eeecCCCCeEEEEEEecCCC-------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CC-C-ce
Q psy15734         92 RDVQETDRGWYMCQINTVPM-------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-P-YV  157 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p-~~  157 (314)
                      .+++.+|+|.|.|.+.+...       ......|.|..    +|.+.... +  ..+.+|+.+.|.|.+.|. |. | .+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~-~--~~~~~g~~v~L~C~~~g~~P~~p~~v  161 (475)
T 1iga_A           85 SSLRPEDTAVYYCARDPYGGGKSEFDYWGQGTLVTVSSASPTSPKVFPLS-L--CSTQPDGNVVIACLVQGFFPQEPLSV  161 (475)
T ss_pred             CCCChhhCEEEEEEEeccCCCccceeeecCceEEEeccCCCcCCeEEecC-c--cccCCCCeEEEEEEEeeecCCCceEE
Confidence            99999999999999976532       12345677763    34444322 1  123689999999999987 65 5 99


Q ss_pred             EEEcCCCceee----------cCCe-------------------eC-----C----------------------------
Q psy15734        158 AWRREDGKAIN----------YNGE-------------------LV-----P----------------------------  175 (314)
Q Consensus       158 ~W~~~~~~~~~----------~~~~-------------------~~-----~----------------------------  175 (314)
                      .|++ ++....          .++.                   +.     .                            
T Consensus       162 ~W~~-~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~  240 (475)
T 1iga_A          162 TWSE-SGQGVTARNFPPSQDASGDLYTTSSQLTLPATQCLAGKSVTCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTP  240 (475)
T ss_pred             EEcC-CCcccceEeCCceecCCCCcEEEEEEEEechhHcCCCceEEEEEEECCCCceeeeEecccccCcccccccccccC
Confidence            9988 442110          1110                   00     0                            


Q ss_pred             ------CeE-EcCCCcceeecCccEEEEEEEeecCC---ceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecC
Q psy15734        176 ------PML-TIPNQLEGAFVSQTVELHCHTEAFPA---SLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSIL  244 (314)
Q Consensus       176 ------p~~-~~~~~~~~v~~g~~~~l~C~~~g~p~---p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~  244 (314)
                            |.+ ..++....+.+|+++.|.|.+.|.++   +.+.| . ++.... ......... .+.+...+.|.|.++.
T Consensus       241 ~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~~~-~~~~~~~~~~~g~~~~~~~L~I~~~~  317 (475)
T 1iga_A          241 SPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKS-AVQGPPERDLCGCYSVSSVLPGCAEP  317 (475)
T ss_pred             CCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCcCC-ccccCceECCCCCEEEEEEEEEchHH
Confidence                  111 11222223578999999999998755   68999 4 333221 111111111 2234566799999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEe-cCCCeeEEEEc-----cccccEeEEEEEeeccCC--CccceE
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNL-VDGDIFQIRKM-----SRLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~-~~~~~~~~~~~-----~~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      .+|+|.|+|.|.|..|.......|.+.. ...+.+.+...     ..++...+.|.|.+++++  .+.|..
T Consensus       318 ~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P~~~~v~W~k  388 (475)
T 1iga_A          318 WNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQ  388 (475)
T ss_pred             hccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeECCCCEEEEEE
Confidence            9999999999999998765555554321 22233333222     233445799999997554  788853

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.94  E-value=6.7e-25  Score=181.53  Aligned_cols=226  Identities=19%  Similarity=0.235  Sum_probs=150.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++. .+.       ..+.++.+.........|.|.+++.+|+
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~-~~~-------~~~~~~~~~~~~~~~~~L~i~~v~~~d~   74 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGK-EII-------ADGLKYRIQEFKGGYHQLIIASVTDDDA   74 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTE-ECC-------CCSSSEEEEEETTTEEEEEESSCCGGGC
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCE-Ecc-------cCCCeEEEEECCCCEEEEEEccCChhhC
Confidence            57899999999999999999999999998889999999543 221       2233454443333344899999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCceeeec---CcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRILLDR---TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~---~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |.|+|.+.+. +.....+.|.|..+|.+....   .+....+..|+.+.|.|.+.+.|.|.+.|++              
T Consensus        75 G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~--------------  140 (305)
T 2nzi_A           75 TVYQVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK--------------  140 (305)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEE--------------
T ss_pred             eEEEEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEE--------------
Confidence            9999999765 334555667776655432210   1123445556666666666665555666665              


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEee-cCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS-ILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~~d~G~Y~C~  254 (314)
                                                          + +..+....++.+....+    ...|.|.+ +..+|+|.|+|.
T Consensus       141 ------------------------------------~-~~~~~~~~~~~~~~~~~----~~~l~i~~~~~~~d~G~Y~C~  179 (305)
T 2nzi_A          141 ------------------------------------G-QDLIDNNGHYQVIVTRS----FTSLVFPNGVERKDAGFYVVC  179 (305)
T ss_dssp             ------------------------------------S-SSBCCSSSSCEEEECSS----EEEEEETTCCCSTTCEEEEEE
T ss_pred             ------------------------------------C-CEECCCCCcEEEEEcCC----ceEEEEecCCccCccEEEEEE
Confidence                                                2 22222222332221111    24899999 999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCeeEEEEc--c-----------ccccE--eEEEEEeeccCCCccceEE
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDIFQIRKM--S-----------RLHMG--AYLCIASNGVVPSVSHRIM  308 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~~~~~~~--~-----------~~~~g--~~~C~a~~~~~~~~~w~v~  308 (314)
                      |.|..|.....+.|.|...|.++..+.-.  .           ..+.+  ...|.+...+.+...|...
T Consensus       180 a~N~~G~~~~~~~l~v~~~P~~p~~~~~~~~~~~~v~l~w~~p~~~g~~~i~~y~v~~~~~~~~~w~~~  248 (305)
T 2nzi_A          180 AKNRFGIDQKTVELDVADVPDPPRGVKVSDVSRDSVNLTWTEPASDGGSKITNYIVEKCATTAERWLRV  248 (305)
T ss_dssp             EEETTEEEEEEEEEEEEBCCCCCEEEEEESCCSSCEEEEEECCSCCSBSCEEEEEEEEEETTSCCEEEE
T ss_pred             EEeCCCceeeEEEEEEecCCCCCCCceeeeccCCEEEEEEcCCccCCCCceeEEEEEEecCCCCccEEC
Confidence            99999999999999998877655433211  0           11122  3677777777777788643

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.94  E-value=1.8e-25  Score=172.14  Aligned_cols=185  Identities=20%  Similarity=0.340  Sum_probs=128.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      ++.|..++..+.+.+|+++.|.|.+.+.+ .+.+.|++.++..+.       ....++.+.......+.|.|.+++.+|+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~i~~~~~~d~   74 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDA   74 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCcccc-------CCCCeEEEEECCCCceEEEEccCCcccC
Confidence            46777888899999999999999998865 789999994444332       2345565554433445899999999999


Q ss_pred             eEEEEEEecCC--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCe
Q psy15734        100 GWYMCQINTVP--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM  177 (314)
Q Consensus       100 G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~  177 (314)
                      |.|+|.+.+..  .....+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.|.+.|++ ++..           
T Consensus        75 G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~~-----------  140 (191)
T 1epf_A           75 GIYKCVVTAEDGTQSEATVNVKIFQKLMFKNAP--TPQEFKEGEDAVIVCDVVSSLPPTIIWKH-KGRD-----------  140 (191)
T ss_dssp             EEEEEEEEETTTEEEEEEEEEEEECCSEEEECC--SSEECCTTSCEEECCEEECSSCCEEEEEE-TTEE-----------
T ss_pred             EEEEEEEEcCCCcceEEEEEEEeecCceEecCC--CcEeecCCCeEEEEEEECCCCCCEEEEEE-CCEE-----------
Confidence            99999997753  33445567777676665433  34556677777777777777777777777 3222           


Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                                                             +............++     .|.|.++..+|+|.|+|.|.|
T Consensus       141 ---------------------------------------~~~~~~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~a~n  176 (191)
T 1epf_A          141 ---------------------------------------VILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEGRI  176 (191)
T ss_dssp             ---------------------------------------GGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEEEE
T ss_pred             ---------------------------------------eeccCCceEEEecCC-----eEEECCCChhhCEEEEEEEEE
Confidence                                                   111111112222333     899999999999999999999


Q ss_pred             CCCCceeEEEEEE
Q psy15734        258 ALGETDGFIKVYV  270 (314)
Q Consensus       258 ~~g~~~~~~~l~V  270 (314)
                      ..+.......+.|
T Consensus       177 ~~~~~~~~~~i~v  189 (191)
T 1epf_A          177 LARGEINFKDIQV  189 (191)
T ss_dssp             GGGTEEEEEEEEE
T ss_pred             ecceeEEEEEEEE
Confidence            9876655555554

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.94  E-value=5.5e-25  Score=169.38  Aligned_cols=183  Identities=19%  Similarity=0.319  Sum_probs=129.8

Q ss_pred             CCCceecCCcceEEEc-CCcEEEEEEecCCCc--eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         20 DMPRFAEPVANVTATV-GKEALMACVVENLRE--YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~-g~~~~l~C~~~~~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+|.+..++ ...+.+ |+++.|.|.+.+.+.  +.+.|++++ ..+.        .+....      ..+.|.|.+++.
T Consensus         2 ~~P~i~~~~-~~~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~-~~~~--------~~~~~~------~~~~L~i~~~~~   65 (190)
T 2wv3_A            2 NEPRIVTSE-EVIIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-VELT--------ATRKNA------SNMEYRINKPRA   65 (190)
T ss_dssp             -CCEEEECC-CEECCCSSSCEEEEEEEEECSSCEEEEEEEETT-EECT--------TCCBCC------SEEEEEESSCCG
T ss_pred             CCCcccccc-eEEEccCCceEEEEEEeccCCCCceEEEEEECC-EECc--------ccceEe------ccEEEEEecCCc
Confidence            357776654 455666 999999999987765  899999954 3221        111110      224899999999


Q ss_pred             CCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcC-CCceeecCCeeCC
Q psy15734         97 TDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE-DGKAINYNGELVP  175 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~-~~~~~~~~~~~~~  175 (314)
                      +|+|.|+|.+.+.+.....+.|.|..+|.+...+  ....+.+|+.+.|.|.+.|+|.|.+.|++. ++..+.       
T Consensus        66 ~d~G~Y~C~~~n~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~v~l~C~~~g~p~p~i~W~~~~~g~~~~-------  136 (190)
T 2wv3_A           66 EDSGEYHCVYHFVSAPKANATIEVKAAPDITGHK--RSENKNEGQDAMMYCKSVGYPHPEWMWRKKENGVFEE-------  136 (190)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEECCCEEEEEC--SEEEEETTSCEEEEEEEECSSCCEEEEEEEETTEEEE-------
T ss_pred             ccCEEEEEEEEeCCcccccEEEEEecCCcccccC--CcceeeCCCcEEEEEEeCccCCCceEEEEcCCCceee-------
Confidence            9999999999776555667788888888876653  456678888888888888888888888873 221110       


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y~C~  254 (314)
                                                              ......++.+..  ++  ..++|.|.++. .+|+|.|+|.
T Consensus       137 ----------------------------------------~~~~~~~~~~~~--~~--~~~~L~i~~~~~~~d~G~Y~C~  172 (190)
T 2wv3_A          137 ----------------------------------------ISNSSGRFFIIN--KE--NYTELNIVNLQITEDPGEYECN  172 (190)
T ss_dssp             ----------------------------------------CCCTTSCEEEEE--CS--SEEEEEECSCCTTTSCEEEEEE
T ss_pred             ----------------------------------------eecCCCeEEEec--CC--CeeEEEEEeccccCCCEEEEEE
Confidence                                                    000112222211  11  12389999999 7999999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      |.|..|....++.|.|.
T Consensus       173 a~N~~g~~~~~~~l~V~  189 (190)
T 2wv3_A          173 ATNSIGSASVSTVLRVR  189 (190)
T ss_dssp             EECSSCEEEEEEEEEEE
T ss_pred             EEecCCcceeEEEEEEE
Confidence            99999999999888875

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=99.94  E-value=2.2e-25  Score=192.35  Aligned_cols=235  Identities=14%  Similarity=0.095  Sum_probs=143.7

Q ss_pred             eeeccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEe
Q psy15734         13 KTKCEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        13 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~   92 (314)
                      ...+.+..+|.+ .+.....+..|+.+.|.|.+.|.|.+.+.|++++.. +...     .......+...     ..   
T Consensus       132 ~~~l~V~~~p~~-~~~~p~~~~~~~~~~L~C~a~G~P~P~i~W~k~~~~-~~~~-----~~~~~~~~~~~-----~~---  196 (423)
T 3qs7_E          132 LFTVSIRNTLLY-TLRRPYFRKMENQDALVCISESVPEPIVEWVLCDSQ-GESC-----KEESPAVVKKE-----EK---  196 (423)
T ss_dssp             EEEEEEC------CEEEEEEEECSSSSCEEEEEEESSCCEEEEEEC-------------------CEEEC-----CS---
T ss_pred             EEEEEEecCccc-cccCCcEeccCCceEEEEEEeeecCCeEEEEECCCC-Cccc-----ccccccccccc-----ce---
Confidence            333344444443 222334456788999999999999999999996542 1100     00000001100     01   


Q ss_pred             eecCCCCeEEEEEEecCCCcce--eEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-cCCCceEEEcCCCceeec
Q psy15734         93 DVQETDRGWYMCQINTVPMTSQ--KGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAINY  169 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~~~~--~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~~~W~~~~~~~~~~  169 (314)
                      -++..|+|.|+|.+.|..+...  .+.|.|..+|.+.    +....+.+|+.+.|.|.+.| .|.|.+.|++ ++..+..
T Consensus       197 ~l~~~d~G~Y~C~A~N~~G~~~~~~~~l~V~~~p~~~----~~~~~v~~G~~v~L~C~~~g~~p~p~i~W~k-~g~~l~~  271 (423)
T 3qs7_E          197 VLHELFGTDIRCCARNELGRECTRLFTIDLNQTPQTT----LPQLFLKVGEPLWIRCKAVHVNHGFGLTWEL-ENKALEE  271 (423)
T ss_dssp             EECCCCSSCEEEEEECSSCEEEEECEEEESSSCCCSS----TTEEEEETTSCEEEEEEEEESSSCCCEEEEE-SSSBCCG
T ss_pred             EEecccCeEEEEEEEcCCCCcceeeEEEEEecCCccC----CCceEEeCCCeEEEEEEEEcCCCCcEEEEEE-CCEEccc
Confidence            1267899999999987643322  3456665555442    34677899999999999998 6779999999 5544322


Q ss_pred             CC-----------------eeC------------------------------CCeEEcCC--CcceeecCccEEEEEEEe
Q psy15734        170 NG-----------------ELV------------------------------PPMLTIPN--QLEGAFVSQTVELHCHTE  200 (314)
Q Consensus       170 ~~-----------------~~~------------------------------~p~~~~~~--~~~~v~~g~~~~l~C~~~  200 (314)
                      ..                 .+.                              +|.+...+  ....+.+|+++.|.|.+.
T Consensus       272 ~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~  351 (423)
T 3qs7_E          272 GNYFEMSTYSTNRTMIRILFAFVSSVARNDTGYYTCSSSKHPSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFK  351 (423)
T ss_dssp             GGEEEEEEEETTTEEEEEEEEEESSCCTTTCEEEEEEETTEEEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEE
T ss_pred             cceeecccccCCceeEEEEEEEEeecCHHHCEEEEEEEecCCCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEE
Confidence            10                 010                              55554433  456678899999999999


Q ss_pred             ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        201 AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       201 g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |+|.|.+.|++++. .+.......    .+.+    .+.+.....+|+|.|+|.|.|..|....++.|.|...|++
T Consensus       352 g~P~p~i~W~k~g~-~l~~~~~~~----~~~~----~~~~~~~~~~D~G~YtC~A~N~~G~~~~s~~L~v~~~p~~  418 (423)
T 3qs7_E          352 AYPQIRCTWTFSRK-SFPCEQKGL----DNGY----SISKFCNHKHQPGEYIFHAENDDAQFTKMFTLNIRSGTKH  418 (423)
T ss_dssp             EESCCEEEEEETTE-EEECBCCBC----SSSS----EEEEECCCTTCCSCEEEEEEETTEEEEEEEEEC-------
T ss_pred             EcCCCeEEEEECCE-ECCCccccc----cCCc----EEEEEecccccCEEEEEEEEcCCceEEEEEEEEEecCCcc
Confidence            99999999999744 343322100    0010    3333566779999999999999999999999999888754

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.94  E-value=1.1e-25  Score=174.59  Aligned_cols=180  Identities=19%  Similarity=0.280  Sum_probs=114.1

Q ss_pred             ceEEEcCCcEEEEEEe---cCCCceEEEEEEcCceeEEEe----eeeee----ecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         30 NVTATVGKEALMACVV---ENLREYKVAWVKMITQTILSI----HHKVV----TQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~---~~~~~~~v~W~~~~~~~~~~~----~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .+++..|++++|.|..   .+.|.+.|.|+|++.......    .....    ....++.+.... ..+.|.|.+++.+|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V~W~k~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~D   80 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEVSWFKLGPGEEQVLIGRMHHDVIFIEWPFRGFFDIHRSA-NTFFLVVTAANISH   80 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEEEEEEEETTTEEEEEEEEETTEEEECGGGBTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEEEEEEcCCCcceEEEEecCCceEEeeccccceEEEEEcC-CEEEEEEccCCHHH
Confidence            5789999999999964   567889999999643211110    00000    112344443332 34589999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCe
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM  177 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~  177 (314)
                      +|.|+|.+.|. +.....+.|.|..||.+...+  ....+.+|+.+.|.|.+.|.|.|.+.|+++++.            
T Consensus        81 ~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~--~~~~v~~g~~~~l~C~~~G~P~P~v~W~~~~~~------------  146 (203)
T 4fa8_A           81 DGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHS--ERSQFPDFSVLTVTCTVNAFPHPHVQWLMPEGV------------  146 (203)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEE--EECCSSCSCCEEEEEEEEEESCCEEEECCC---------------
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEecCCceeeecc--eeEEEcCCCEEEEEEEcCCCCCCEEEEEECCee------------
Confidence            99999999775 444556678887766655432  444566777777777777777777777763321            


Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                            .... ....++....++  ....|.|.+++.+|+|.|+|.|.
T Consensus       147 --------------------------------------~~~~~~~~~r~~~~~~g--~l~il~i~~v~~~D~G~YtC~A~  186 (203)
T 4fa8_A          147 --------------------------------------EPAPTAANGGVMKEKDG--SLSVAVDLSLPKPWHLPVTCVGK  186 (203)
T ss_dssp             -----------------------------------------------CCEECTTS--CEEEEEEEEECSSCCCCEEEEEE
T ss_pred             --------------------------------------ecCcccccceEEEeCCC--CEEEEEECCCCHHHCEEEEEEEE
Confidence                                                  1110 011111122222  11266778999999999999999


Q ss_pred             eCCCCcee
Q psy15734        257 NALGETDG  264 (314)
Q Consensus       257 n~~g~~~~  264 (314)
                      |..|.+..
T Consensus       187 N~~G~a~~  194 (203)
T 4fa8_A          187 NDKEEAHG  194 (203)
T ss_dssp             SSSCEEEE
T ss_pred             cCCCEEEE
Confidence            99998765

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.94  E-value=1.9e-27  Score=206.62  Aligned_cols=278  Identities=15%  Similarity=0.204  Sum_probs=171.7

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEE---Eeee------eeeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTIL---SIHH------KVVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~---~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|++ +..+.   ....      ......+|+.+..+. ...++|.|.
T Consensus         4 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   83 (434)
T 1igy_B            4 QESGAELARPGASVKMSCKASGYTFTTYTIHWIKQRPGQGLEWIGYINPSSVYTNYNQRFKDKATLTRDRSSNTANIHLS   83 (434)
T ss_dssp             ECCCCCEECTBCCEEECCEECSSCGGGCCCEEEEECTTCCEEEEEECCSSSCCCCCCGGGTTTEECCBCGGGCBBCEEEC
T ss_pred             ECCCCeEecCCCCEEEEEEccCCcccCceEEEEEECCCCCCEEEEEEccCCCceecCccccccEEEEEECCCCEEEEEEC
Confidence            345677899999999999998753  6789999964 22211   1000      001124576665432 234579999


Q ss_pred             eecCCCCeEEEEEEecCC-CcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCc
Q psy15734         93 DVQETDRGWYMCQINTVP-MTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGK  165 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~  165 (314)
                      +++.+|+|.|+|.+.+.. .......|.|..    +|.+....  ....+.+|+.+.|.|.+.|. |.| .+.|++ ++.
T Consensus        84 ~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k-~~~  160 (434)
T 1igy_B           84 SLTSDDSAVYYCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-GSL  160 (434)
T ss_dssp             SBCGGGCSEECCCCSSSSCCCCCCEECEECCSCCBCCCEEEEC--CCCCCCCTTEEEEEEEEEEEBSSCCEEEETT-TTB
T ss_pred             CCChHHCEEEEEEEEccccccCCceEEEEccCCCCCCeEEEcC--CccccCCCCcEEEEEEEeeecCCCeEEEEee-CCc
Confidence            999999999999996632 233445677753    45554332  12235789999999999986 776 999998 443


Q ss_pred             eee--------c------------------CCeeC--------C------------------------CeE-EcCCCcce
Q psy15734        166 AIN--------Y------------------NGELV--------P------------------------PML-TIPNQLEG  186 (314)
Q Consensus       166 ~~~--------~------------------~~~~~--------~------------------------p~~-~~~~~~~~  186 (314)
                      .+.        .                  ++.+.        .                        |.+ ..++....
T Consensus       161 ~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dg~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~p~~~~  240 (434)
T 1igy_B          161 SSGVHTFPAVLQSDLYTLSSSVTVPSSPRPSETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFPPKPKD  240 (434)
T ss_dssp             CSSEEECCCEECSSCEEEEEEEEEETTTTTSSCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEECCCHHH
T ss_pred             CCCeEecCceecCCcEEEEEEEEEcchhcCCCcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeCCChHH
Confidence            210        0                  01100        0                        222 22332222


Q ss_pred             -eecCccEEEEEEEeecC----CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        187 -AFVSQTVELHCHTEAFP----ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       187 -v~~g~~~~l~C~~~g~p----~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                       +.+|+++.|.|.+.|.|    .+.+.|++++................+.+...+.|.|.++..+|+|.|+|.|.|..|.
T Consensus       241 ~v~~G~~~~L~C~~~g~~p~P~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~  320 (434)
T 1igy_B          241 TLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFP  320 (434)
T ss_dssp             HHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCS
T ss_pred             hcccCCCcEEEEEEeccccCCCCeEEEEEeCCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCC
Confidence             78899999999999984    3589999986543221111111111222344558999999999999999999999886


Q ss_pred             ce--eEEEEEEEecCCCeeEEEEc----cccccEeEEEEEeeccCC--Cccce
Q psy15734        262 TD--GFIKVYVNLVDGDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       262 ~~--~~~~l~V~~~~~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ..  ..+.+.+.....+.+.+...    ..+....+.|.+.+++++  .++|.
T Consensus       321 ~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  373 (434)
T 1igy_B          321 APIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFPEDITVEWQ  373 (434)
T ss_dssp             SCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBCSCEEEEEE
T ss_pred             CceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeECCCeEEEEE
Confidence            53  33332112222233333221    123346799999997554  78885

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.93  E-value=5e-25  Score=178.71  Aligned_cols=208  Identities=18%  Similarity=0.178  Sum_probs=142.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecC-CCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeee---
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVEN-LREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDV---   94 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~---   94 (314)
                      +|.+..+   ..+.+|+++.|.|.+.+ .|.+  .+.|++++ ..+..            .+...+.   .|.+..+   
T Consensus         6 ~p~~~~~---~~v~~G~~v~l~C~~~g~~p~p~~~v~W~k~~-~~l~~------------~~~~~~~---~~~~~~~~~~   66 (265)
T 2oz4_A            6 PPQLVSP---RVLEVDTQGTVVCSLDGLFPVSEAQVHLALGD-QRLNP------------TVTYGND---SFSAKASVSV   66 (265)
T ss_dssp             CCEEECC---SEEETTEEEEEEEEEESCSCGGGCEEEEEETT-EECCC------------EEEECSS---EEEEEEEEEE
T ss_pred             CCccccC---ceEecCCCEEEEEEccCCCCCcceEEEEEeCC-EECCc------------eEeeCCC---eEEEEeeccc
Confidence            4554433   36899999999999988 6666  99999954 32211            1111111   3444444   


Q ss_pred             cCCCCeE--EEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC
Q psy15734         95 QETDRGW--YMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG  171 (314)
Q Consensus        95 ~~~d~G~--Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~  171 (314)
                      +.+|+|.  |+|.+.+. +.......|.|...|......  ....+.+|+.+.|.|.+.  |.+.+.|   ++..+...+
T Consensus        67 ~~~d~g~g~Y~C~a~n~~~~~~~~~~l~V~~~p~p~~~~--~~~~v~~G~~v~l~C~~~--p~~~i~W---~g~~~~~~~  139 (265)
T 2oz4_A           67 TAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL--TKPEVSEGTEVTVKCEAH--PRAKVTL---NGVPAQPLG  139 (265)
T ss_dssp             CGGGCEEEEEEEEEEETTEEEEEEEEEEEECCCCCEEEE--SCSEEETTCEEEEEEECC--TTSEEEE---SSCSSSCCS
T ss_pred             ccccCCcceEEEEEecCCCCcEEEEEEEEeCCCCceeec--CCceecCCCcEEEEEEcc--CCCEEEE---CCEEccCCC
Confidence            7888885  99999775 445566778887644322222  345678899999999988  8899999   444432211


Q ss_pred             ee----------------C------------------------CCeEEcC--CCcceeecCccEEEEEEEeecCCceeEE
Q psy15734        172 EL----------------V------------------------PPMLTIP--NQLEGAFVSQTVELHCHTEAFPASLNYW  209 (314)
Q Consensus       172 ~~----------------~------------------------~p~~~~~--~~~~~v~~g~~~~l~C~~~g~p~p~~~W  209 (314)
                      ..                .                        +|.+...  +....+.+|+++.|.|.+.|.|.|.+.|
T Consensus       140 ~~~~l~i~~~~~~~~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i~W  219 (265)
T 2oz4_A          140 PRAQLLLKATPEDNGRSFSCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKC  219 (265)
T ss_dssp             SEECCEEECCGGGTTEEEEEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEE
T ss_pred             CcEEEEEccccccCCceEEEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeEEE
Confidence            00                0                        2332222  3455788999999999999999999999


Q ss_pred             ecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      ++++....           ..+     .|  ..+..+|+|.|+|.|.|..|.....+.|.|..
T Consensus       220 ~~~~~~~~-----------~~g-----~~--~~v~~~d~G~Y~C~a~N~~G~~~~~~~l~V~~  264 (265)
T 2oz4_A          220 LKDGTFPL-----------PIG-----ES--VTVTRDLEGTYLCRARSTQGEVTREVTVNVLS  264 (265)
T ss_dssp             EETTTEEC-----------CTT-----SC--EECCGGGCEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EECCcccC-----------CCC-----cE--EEeehhhCeEEEEEEECCCCcEEEEEEEEEec
Confidence            99865111           111     22  24888999999999999999999999998864

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.93  E-value=2.4e-25  Score=171.05  Aligned_cols=184  Identities=27%  Similarity=0.454  Sum_probs=125.4

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++.. +.      ...+.++.+..+.    .|.|.+++.+|+|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~------~~~~~~~~~~~~~----~L~i~~~~~~d~G   70 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEE-VT------TISDNRFAMLANN----NLQILNINKSDEG   70 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC------C------BCCCTTEEECTTS----CEEETTCCGGGCE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcc-ce------eccCCeEEEecCC----CEEEeeCCHhHCc
Confidence            57888889999999999999999999888889999995532 21      1123455443322    6999999999999


Q ss_pred             EEEEEEecCCCc---ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCe
Q psy15734        101 WYMCQINTVPMT---SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPM  177 (314)
Q Consensus       101 ~Y~C~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~  177 (314)
                      .|+|.+.+....   .....+.|..+|.+..........+.+|+.+.|.|.+.+.|.|.+.|++ ++.            
T Consensus        71 ~Y~C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~-~g~------------  137 (189)
T 2v5t_A           71 IYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR-NGK------------  137 (189)
T ss_dssp             EEEEEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEE-TTE------------
T ss_pred             EEEEEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEE-CCE------------
Confidence            999999765322   2334566666665544322223445566667777766666666666666 322            


Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                                                            .+.....+... ..+.     .|.|.++..+|+|.|+|.|.|
T Consensus       138 --------------------------------------~~~~~~~~~~~-~~~~-----~L~i~~~~~~d~G~Y~C~a~n  173 (189)
T 2v5t_A          138 --------------------------------------LIEENEKYILK-GSNT-----ELTVRNIINSDGGPYVCRATN  173 (189)
T ss_dssp             --------------------------------------ECCCSSSEEEE-TTTT-----EEEECSCCGGGCEEEEEEEEE
T ss_pred             --------------------------------------ECcCCCcEEEe-cCCC-----EEEEcCCChhhCeeEEEEEEe
Confidence                                                  22222222211 1122     899999999999999999999


Q ss_pred             CCCCceeEEEEEEEe
Q psy15734        258 ALGETDGFIKVYVNL  272 (314)
Q Consensus       258 ~~g~~~~~~~l~V~~  272 (314)
                      ..|....++.|.|.+
T Consensus       174 ~~g~~~~~~~l~V~v  188 (189)
T 2v5t_A          174 KAGEDEKQAFLQVFV  188 (189)
T ss_dssp             TTEEEEEEEEEEEEC
T ss_pred             CCCceeEEEEEEEEe
Confidence            999999998888764

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.93  E-value=1e-24  Score=170.86  Aligned_cols=191  Identities=23%  Similarity=0.331  Sum_probs=118.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEE-eCCceeEEEEEeee-cC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSWFLHLRDV-QE   96 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~-~~   96 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+.         ..+.... ..+.....|.|.++ +.
T Consensus         4 ~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~-~~~~---------~~~~~~~~~~~~~~~~L~i~~v~~~   73 (212)
T 2yd6_A            4 ETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKG-KKVS---------NQRFEVIEFDDGSGSVLRIQPLRTP   73 (212)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EECC---------CTTEEEEEEGGGTEEEEEECSCCTT
T ss_pred             CCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECC-cCCC---------CCceeEEEEcCCCceEEEEeccCCC
Confidence            45788988899999999999999999998888999999954 3221         1222221 22223347999999 49


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeCC-------ceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceee
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVPP-------RILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p-------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~  168 (314)
                      +|+|.|+|.+.+. +.....+.|.|..++       .+...  +....+..|+.+.|.|.+.|.|.|.+.|++       
T Consensus        74 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~--~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~-------  144 (212)
T 2yd6_A           74 RDEAIYECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMG--PQLKVVERTRTATMLCAASGNPDPEITWFK-------  144 (212)
T ss_dssp             TTCEEEEEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEEE-------
T ss_pred             CCCeEEEEEEEcCCCcEEEEEEEEEeccCccCCCcceeecC--CcceeEecCCCEEEEEEecCCCCCeEEEEE-------
Confidence            9999999999765 333445566666532       22111  122334445555555555444444555554       


Q ss_pred             cCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        169 YNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                                                 ++..+.......++......  ..+.|.|.++..+|+
T Consensus       145 -------------------------------------------~g~~l~~~~~~~~~~~~~~~--~~~~L~i~~~~~~d~  179 (212)
T 2yd6_A          145 -------------------------------------------DFLPVDTSNNNGRIKQLRSE--SIGALQIEQSEESDQ  179 (212)
T ss_dssp             -------------------------------------------TTEEC------CCEEEEEET--TEEEEEECSCCGGGC
T ss_pred             -------------------------------------------CCccccCcCCCceEEEEecC--CeEEEEEcCCCcccC
Confidence                                                       32222111111111111111  124999999999999


Q ss_pred             eEEEEEEeeCCCCce-eEEEEEEEec
Q psy15734        249 GSYRCVAVNALGETD-GFIKVYVNLV  273 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~-~~~~l~V~~~  273 (314)
                      |.|+|.|.|..|... ..+.|.|...
T Consensus       180 G~Y~C~a~N~~G~~~s~~a~l~~~~~  205 (212)
T 2yd6_A          180 GKYECVATNSAGTRYSAPANLYVRGT  205 (212)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC-
T ss_pred             EEEEEEEECCCCccccccccEEEEec
Confidence            999999999999774 4566666554

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=99.93  E-value=3.1e-25  Score=190.12  Aligned_cols=225  Identities=19%  Similarity=0.273  Sum_probs=156.2

Q ss_pred             CcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe---EEE
Q psy15734         28 VANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG---WYM  103 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~  103 (314)
                      +....+.+|+++.|.|.+ .+.|.+.+.|++++.......  .....+.++....++    .|.|.+++.+|+|   .|+
T Consensus       107 ~~~~~~~~G~~v~l~C~~~~~~p~~~v~W~~~~~~~~~~~--~~~~~~~~~~~~~~~----~L~i~~v~~~d~G~~~~Y~  180 (395)
T 1bih_A          107 THEKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA--DVTDFDRRITAGPDG----NLYFTIVTKEDVSDIYKYV  180 (395)
T ss_dssp             EEEECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG--CCCCCCTTEEECTTS----CEEEEEECGGGCCSSEEEE
T ss_pred             CcceeeeeCCcEEEEecCCCCCCCCeEEEEecCCCcCccc--ccccccccEEEcCCC----cEEEEEEeeccCCCceEEE
Confidence            446678899999999996 677889999999641100000  000113344443322    6999999999999   999


Q ss_pred             EEEecCCCc-ceeEEE---EEEeCCc-------eeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC-
Q psy15734        104 CQINTVPMT-SQKGYL---QVVVPPR-------ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG-  171 (314)
Q Consensus       104 C~~~~~~~~-~~~~~l---~v~~~p~-------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~-  171 (314)
                      |.+.+.... ......   .+...+.       .... .+....+.+|+.+.|.|.+.+.|.|.+.|++ ++..+.... 
T Consensus       181 C~a~n~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~-~~~~~~~~~G~~v~l~C~~~g~p~~~i~W~~-~g~~~~~~~~  258 (395)
T 1bih_A          181 CTAKNAAVDEEVVLVEYEIKGVTKDNSGYKGEPVPQY-VSKDMMAKAGDVTMIYCMYGSNPMGYPNYFK-NGKDVNGNPE  258 (395)
T ss_dssp             EEEECTTCSSCEEEEEEEECCCBCCSSCCCCCCEEEE-ECCSEEEETTSCEEEEEEEECSSCCCCEEEE-TTEECCCCTT
T ss_pred             EEEEecccceEEEeeeEEecccccccccccCCcCcee-cCCceEEECCCcEEEEEEeccCCCCeEEEEE-CCEEcCCCCc
Confidence            999765332 222211   1111110       0000 1345678899999999999999999999999 555543210 


Q ss_pred             ------------eeC----------------------------------CCeEEcCCCc-ceeecCccEEEEEEEeecCC
Q psy15734        172 ------------ELV----------------------------------PPMLTIPNQL-EGAFVSQTVELHCHTEAFPA  204 (314)
Q Consensus       172 ------------~~~----------------------------------~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~  204 (314)
                                  .+.                                  +|.+...+.. ..+.+|+++.|.|.+.|.|.
T Consensus       259 ~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~  338 (395)
T 1bih_A          259 DRITRHNRTSGKRLLFKTTLPEDEGVYTCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPA  338 (395)
T ss_dssp             SSEESCSSSTTSEEEESSCCGGGCEEEEEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESC
T ss_pred             eeEEEEecCCCceEEEccCChhhCEEEEEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccC
Confidence                        111                                  5666665555 77899999999999999999


Q ss_pred             ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        205 SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       205 p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      |.+.|++++ ..+. ..++.+   .++     .|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus       339 p~v~W~~~g-~~~~-~~~~~~---~~~-----~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~V  394 (395)
T 1bih_A          339 PNVVWSHNA-KPLS-GGRATV---TDS-----GLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV  394 (395)
T ss_dssp             CCCEEEETT-EECC-SSSEEE---ETT-----EEEESSCCSTTCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CeeEEEECC-EECC-CCceEE---ECC-----EEEEeeCCcccCEEEEEEEEccCCCceEEEEEEE
Confidence            999999974 3332 223322   333     9999999999999999999999999999988877

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.93  E-value=2.9e-25  Score=171.14  Aligned_cols=186  Identities=29%  Similarity=0.513  Sum_probs=131.3

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...+|.|..++..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+       ...+.++.+..++   ..|.|.+++.+
T Consensus         4 ~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~-~~~-------~~~~~~~~~~~~~---~~L~i~~~~~~   72 (192)
T 2iep_A            4 LPKAPVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNK-ILI-------KLFDTRYSIRENG---QLLTILSVEDS   72 (192)
T ss_dssp             CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETT-EEC-------CTTCTTEEEEGGG---TEEEESSCCGG
T ss_pred             cCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECC-EEc-------cccCccEEEcCCc---cEEEEcCCCcc
Confidence            345688888888999999999999999988888899999954 322       1224455554332   26999999999


Q ss_pred             CCeEEEEEEecCCC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734         98 DRGWYMCQINTVPM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus        98 d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |+|.|+|.+.+...  ......|.|..+|.+...+  ....+..|+.+.|.|.+.+.|.+.+.|++ ++.          
T Consensus        73 d~G~Y~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~v~W~~-~~~----------  139 (192)
T 2iep_A           73 DDGIYCCTANNGVGGAVESCGALQVKMKPKITRPP--INVKIIEGLKAVLPCTTMGNPKPSVSWIK-GDS----------  139 (192)
T ss_dssp             GCEEEEEEEECSSSCCEEEEEEEEEEEEEEEEECC--CCEEEETTSCEEECCEEEEESCCEEEEEE-TTE----------
T ss_pred             cCeEEEEEEEcCCCceeEeEEEEEEEeCCccccCC--cceEEeCCCcEEEEEEEeccCCceEEEEe-CCE----------
Confidence            99999999976532  3445667777766655432  34556677777777777777767777776 322          


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                                                              .+....++.  ...++     .|.|.++..+|+|.|+|.|
T Consensus       140 ----------------------------------------~~~~~~~~~--~~~~~-----~L~i~~~~~~d~G~Y~C~a  172 (192)
T 2iep_A          140 ----------------------------------------ALRENSRIA--VLESG-----SLRIHNVQKEDAGQYRCVA  172 (192)
T ss_dssp             ----------------------------------------ECCCCSSEE--ECTTS-----CEEESSCCGGGCEEEEEEE
T ss_pred             ----------------------------------------EccCCCcEE--EecCC-----cEEEecCChhhCEEEEEEE
Confidence                                                    222222211  12233     8999999999999999999


Q ss_pred             eeCCCCc-eeEEEEEEEecC
Q psy15734        256 VNALGET-DGFIKVYVNLVD  274 (314)
Q Consensus       256 ~n~~g~~-~~~~~l~V~~~~  274 (314)
                      .|..|.. +..+.|.|..+|
T Consensus       173 ~n~~g~~~s~~~~l~V~~pp  192 (192)
T 2iep_A          173 KNSLGTAYSKLVKLEVEVFA  192 (192)
T ss_dssp             EETTEEEECCCEEEEEEC--
T ss_pred             EcCCCcEEEEEEEEEEEeCC
Confidence            9999987 557888887653

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.93  E-value=2.7e-26  Score=213.04  Aligned_cols=275  Identities=17%  Similarity=0.265  Sum_probs=60.4

Q ss_pred             CCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCceeEEEeeeeeeecCcCEEEE-eCCceeEEEEEeeecCCCCeEEE
Q psy15734         27 PVANVTATVGKEALMACVVEN--LREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      ++..+.+.+|+++.|.|.+.+  .+.+.+.|++++........   .......... ........|.|.+++.+|+|.|+
T Consensus       230 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~  306 (772)
T 3v2a_R          230 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKL---VNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYT  306 (772)
T ss_dssp             CCSCEEEETTCCEEEEEEEEECTTCCCEEEEECC--------C---EEEEC-----CCCEEEEEEEEESSCCSTTCSEEE
T ss_pred             CCCceEEecCCcEEEEEEEecCCCCceeEEEecCCccCCCcee---eeccccccccccceEEEEEEEECcCCcCCCeEEE
Confidence            455578999999999999976  45678999996543211000   0000000000 00112237999999999999999


Q ss_pred             EEEecC-CCcceeEEEEEEeCCceeeec-CcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe------eC-
Q psy15734        104 CQINTV-PMTSQKGYLQVVVPPRILLDR-TSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE------LV-  174 (314)
Q Consensus       104 C~~~~~-~~~~~~~~l~v~~~p~~~~~~-~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~------~~-  174 (314)
                      |.+.+. +..+..+.|.|..+|.+.... .+....+.+|+.+.|.|.+.++|.+.+.|++ ++..+.....      +. 
T Consensus       307 C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~-~g~~l~~~~~~~~~~~L~i  385 (772)
T 3v2a_R          307 CAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEIKWYK-NGIPLESNHTIKAGHVLTI  385 (772)
T ss_dssp             EEEECSSCEEEEEEEEEEECCCC---------------------------------------------------------
T ss_pred             EEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEEE-CCEeCCCCceEccceeEEE
Confidence            999765 344566788888888765432 1235568899999999999999999999998 6655432211      00 


Q ss_pred             ----------------------------------CCeEEcC---CCcceeecCccEEEEEEEeecCCce-eEEecCCCee
Q psy15734        175 ----------------------------------PPMLTIP---NQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDM  216 (314)
Q Consensus       175 ----------------------------------~p~~~~~---~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~  216 (314)
                                                        +|.+...   .....+.+|+.+.|.|.+.|.|.|. +.|+++++..
T Consensus       386 ~~v~~~d~G~Y~C~a~n~~g~~~~s~~~~l~v~~~P~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~~~~~~  465 (772)
T 3v2a_R          386 MEVSERDTGNYTVILTNPISKEKQSHVVSLVVYVPPQIGEKSLISPVDSYQYGTTQTLTCTVYAIPPPHHIHWYWQLEEE  465 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ecCChhcCceEEEEEEECCcCeEEEEEEEEEEecCCcccccccCCCccccCCCCcEEEEeEeccCCCCcEEEEEEcCCcc
Confidence                                              3333211   1112378899999999999999997 9999863221


Q ss_pred             ee------------------------------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        217 II------------------------------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       217 ~~------------------------------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ..                              ...........+.....+.|.|.++  +|+|.|+|.|.|..|.....+
T Consensus       466 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~L~i~~~--~d~G~Y~C~a~N~~g~~~~~~  543 (772)
T 3v2a_R          466 CANEPSQAVSVTNPYPCEEWRSVEDFQGGNKIEVNKNQFALIEGKNKTVSTLVIQAA--NVSALYKCEAVNKVGRGERVI  543 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             ccccccccccccCcCccccccccccccCCCcEEEeccceeeccCcceEEEEEEEeec--ccCeEEEEEEEccccccceeE
Confidence            00                              0000000011111222358888877  799999999999999999988


Q ss_pred             EEEEEecCCCeeEE-EEccccccEeEEEEEeeccCCCccceE
Q psy15734        267 KVYVNLVDGDIFQI-RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       267 ~l~V~~~~~~~~~~-~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|.|...+.-.+.. ..+..++...+.|.+.+.+.+.+.|..
T Consensus       544 ~l~V~~~p~i~~~p~~~~~~G~~v~l~C~~~~~p~~~v~W~k  585 (772)
T 3v2a_R          544 SFHVTRGPEITLQPDMQPTEQESVSLWCTADRSTFENLTWYK  585 (772)
T ss_dssp             ------------------------------------------
T ss_pred             EEEEECCceeeccCCcccccCCceEEEEeccCCCCCCcEEEE
Confidence            88888653221111 123344445699999999999999964

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.93  E-value=1.9e-24  Score=168.40  Aligned_cols=199  Identities=13%  Similarity=0.105  Sum_probs=113.6

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC-ceeEEEEEeeecCCCC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND-HRSWFLHLRDVQETDR   99 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~d~   99 (314)
                      |.|..+. .+.+.+|+.+.|.|.+.. .|.+.+.|++++ ..+        ..+.++.+..+. ....+|.|.+++.+|+
T Consensus         4 p~~~~~~-~~~v~eg~~v~l~c~~~~~~P~p~i~W~kng-~~l--------~~~~~~~~~~~~~~g~~~L~I~~v~~~D~   73 (207)
T 3rbs_A            4 PFTKSEL-AVEILEKGQVRFWMQAEKLSGNAKVNYIFNE-KEI--------FEGPKYKMHIDRNTGIIEMFMEKLQDEDE   73 (207)
T ss_dssp             --CCEEE-EEEECGGGCEEEEEECSCCCSCCEEEEEETT-EEE--------CSSSSCEEEECTTTCEEEEEESCCCGGGC
T ss_pred             CeeecCC-ceEEEeCCeEEEEEEEecCCCCCEEEEEECC-EEC--------ccCCCEEEEEeCCCCEEEEEECCCChhhC
Confidence            5555544 688999999999999964 688999999954 433        233444444432 2334799999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT  179 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~  179 (314)
                      |.|+|.+.| +.......+.+.......... .......  ..      .. ...|.+.                     
T Consensus        74 G~Y~C~a~N-g~a~~~~~~~~~~~~~~~~~~-~~~~~~~--~~------~~-~~~P~~~---------------------  121 (207)
T 3rbs_A           74 GTYTFQLQD-GKATNHSTVVLVGDVFKKLQK-EAEFQRQ--EW------IR-KQGPHFV---------------------  121 (207)
T ss_dssp             EEEEEEEEE-TTEEEEEEEEECTHHHHHHHH-HHHHHHH--HH------HH-HTSSEEE---------------------
T ss_pred             EEEEEEEEC-CCeEEEEEEEEEccchhhhcc-ccccccc--cc------cc-CCCCceE---------------------
Confidence            999999987 433333332211000000000 0000000  00      00 0011110                     


Q ss_pred             cCCCcceeecCccEEEEEEEeec-CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+. ...+.+|+++.|.|.+.|. |.|.+.|+++ +..+....++..   .+   ...+|.|.++..+|+|.|+|.|.|.
T Consensus       122 ~~~-~~~v~~g~~v~l~C~v~g~~P~p~i~W~k~-g~~l~~~~~~~~---~~---~~~~L~I~~v~~~D~G~Y~C~a~N~  193 (207)
T 3rbs_A          122 EYL-SWEVTGECNVLLKCKVANIKKETHIVWYKD-EREISVDEKHDF---KD---GICTLLITEFSKKDAGIYEVILKDD  193 (207)
T ss_dssp             EEE-EEEEETTTEEEEEEEEESCCTTCEEEEEET-TEEECCCCCCCC---SS---EEEEEEETTCCGGGCEEEEEEEEET
T ss_pred             ecC-CcEEcCCCcEEEEEEEeCCCCCCEEEEEEC-CEECCCCCceEc---CC---CEEEEEECCCCcccCEEEEEEEEcC
Confidence            000 1234455566666666655 5566666664 333322222211   11   1248999999999999999999999


Q ss_pred             CCCceeEEEEEE
Q psy15734        259 LGETDGFIKVYV  270 (314)
Q Consensus       259 ~g~~~~~~~l~V  270 (314)
                      .|....++.|.+
T Consensus       194 ~G~~~~~~~L~~  205 (207)
T 3rbs_A          194 RGKDKSRLKLVD  205 (207)
T ss_dssp             TEEEEEEEEECC
T ss_pred             CCEEEEEEEEec
Confidence            999998888754

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.92  E-value=3.8e-24  Score=165.32  Aligned_cols=180  Identities=24%  Similarity=0.361  Sum_probs=127.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCc--e----eEEEEEe
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH--R----SWFLHLR   92 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~----~~~L~i~   92 (314)
                      ++|.|+.++..+.+.+|+++.|.|.+. +.+.+.+.|++++ ..+....      ..++.+.....  .    ...|.|.
T Consensus         1 e~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g-~~l~~~~------~~~~~~~~~~~~~~~~~~~~~L~i~   73 (195)
T 2c5d_C            1 EESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDG-QILELAD------STQTQVPLGEDEQDDWIVVSQLRIT   73 (195)
T ss_dssp             -CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETT-EECCSCE------EEEEEEECSSSTTSEEEEEEEEEES
T ss_pred             CCCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECC-EEcccCC------CCceEEEEccccccceeeccEEEEE
Confidence            368899999999999999999999998 8888899999954 4332110      01222221111  0    3489999


Q ss_pred             eecCCCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC-ceEEEcCCCceeec
Q psy15734         93 DVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINY  169 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~~~W~~~~~~~~~~  169 (314)
                      +++.+|+|.|+|.+.+....  +..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.| .+.|++ ++..+  
T Consensus        74 ~~~~~d~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~~--  148 (195)
T 2c5d_C           74 SLQLSDTGQYQCLVFLGHQTFVSQPGYVGLEGLPYFLEEP--EDRTVAANTPFNLSCQAQGPPEPVDLLWLQ-DAVPL--  148 (195)
T ss_dssp             SCCSTTCEEEEEEEEETTEEEECCCEEEEECCSCEEEECC--CCEEECTTCCEEEEEEEECSSCCCEEEEEE-SSCBS--
T ss_pred             eccccCCcEEEEEEEeCCCceecccEEEEEecCCeEEcCC--CcEEEcCCCEEEEEeECCCCCCCCEEEEEE-CCEec--
Confidence            99999999999999765322  334678887777765533  44667778888888888877777 788887 33221  


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                                                                      ......    ..     ...|.|.+++  |+|
T Consensus       149 ------------------------------------------------~~~~~~----~~-----~~~L~i~~~~--d~G  169 (195)
T 2c5d_C          149 ------------------------------------------------ATAPGH----GP-----QRSLHVPGLN--KTS  169 (195)
T ss_dssp             ------------------------------------------------SSSTTS----SC-----CEEEEECCCS--SCE
T ss_pred             ------------------------------------------------cCCCCc----CC-----CCeEEEcccc--cCc
Confidence                                                            111110    11     1389999987  899


Q ss_pred             EEEEEEeeCCCCce-eEEEEEE
Q psy15734        250 SYRCVAVNALGETD-GFIKVYV  270 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~-~~~~l~V  270 (314)
                      .|+|.|.|..|... ..+.|.|
T Consensus       170 ~Y~C~a~N~~g~~~s~~~~l~V  191 (195)
T 2c5d_C          170 SFSCEAHNAKGVTTSRTATITV  191 (195)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             eEEEEEEcCCCceEEEEEEEEE
Confidence            99999999999885 7888888

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.92  E-value=4.7e-23  Score=176.27  Aligned_cols=213  Identities=20%  Similarity=0.339  Sum_probs=144.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|.. +....+.+|+++.|.|.+.+.|.+.+.|++++ +..+...   ....+.++.+... ...+.|.|.+++.+|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~---~~~~~~~~~~~~~-~~~~~L~i~~v~~~D~   75 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEG---DKSLDGRIEVKGQ-HGSSSLHIKDVKLSDS   75 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC-----CCSSSSEEEEEC-SSEEEEEEESCCGGGC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccC---cCCCCCeEEEecc-CCcceEEEcccChhhC
Confidence            466666 55677889999999999999999999999962 4433210   0122456666543 2345899999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPML  178 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~  178 (314)
                      |.|+|.+.|. +..+..+.|.|..+|.+...  +....+.+|+.+.|.|.+.|.|.+.+.|++ ++..+           
T Consensus        76 G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~--~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~-~g~~l-----------  141 (389)
T 2jll_A           76 GRYDCEAASRIGGHQKSMYLDIEYAPKFISN--QTIYYSWEGNPINISCDVKSNPPASIHWRR-DKLVL-----------  141 (389)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEEEEECCS--CCEEEECTTCCEEEEECEEEESCCEEEEEE-TTEES-----------
T ss_pred             EEEEEEEEeCCCCcceEEEEEEEeCCEEecC--cceEEeccCCEEEEEEEEEecCCCeEEEEE-CCccC-----------
Confidence            9999999775 55566778888877766542  233456677777788877777777777777 33322           


Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                             ....  ++.+.  .++  ..+.|.|.++..+|+|.|+|.|.
T Consensus       142 ---------------------------------------~~~~~~~~~~~--~~~--~~~~L~i~~~~~~d~G~Y~C~a~  178 (389)
T 2jll_A          142 ---------------------------------------PAKNTTNLKTY--STG--RKMILEIAPTSDNDFGRYNCTAT  178 (389)
T ss_dssp             ---------------------------------------SCTTCTTEEEE--ECS--SCEEEEECCCSTTSSEEEEEEEE
T ss_pred             ---------------------------------------CcccCceEEEe--ccC--CEEEEEECCCChhhCEEEEEEEE
Confidence                                                   1111  11111  111  12389999999999999999999


Q ss_pred             eCCCCceeEEEEEEEecCCCeeEEEEcc-ccccEeEEEEE
Q psy15734        257 NALGETDGFIKVYVNLVDGDIFQIRKMS-RLHMGAYLCIA  295 (314)
Q Consensus       257 n~~g~~~~~~~l~V~~~~~~~~~~~~~~-~~~~g~~~C~a  295 (314)
                      |..|.....+.|.|...|..+..+.... ......+.|..
T Consensus       179 N~~G~~~~~~~l~v~~~P~~P~~~~~~~~~~~~~~l~w~~  218 (389)
T 2jll_A          179 NHIGTRFQEYILALADVPSSPYGVKIIELSQTTAKVSFNK  218 (389)
T ss_dssp             ETTEEEEEEEEEEECCCCCCCEEEEEEEECSSCEEEEEEC
T ss_pred             cCCCcEEEEEEEEecCCCCCCcceEEeeccCCEEEEEEeC
Confidence            9999998888888877776653332211 22334566653

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.92  E-value=1e-24  Score=181.50  Aligned_cols=229  Identities=15%  Similarity=0.151  Sum_probs=139.6

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ....+|.|...+. ..+.+|++++|.|.+.+. .+.+.|+|++......     .         ........|.|.+++.
T Consensus        20 ~~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~-~~~~~W~k~g~~~~~~-----~---------~~~~~~~~L~I~~v~~   83 (316)
T 3vh8_G           20 GGQDKPFLSAWPS-AVVPRGGHVTLRCHYRHR-FNNFMLYKEDRIHIPI-----F---------HGRIFQESFNMSPVTT   83 (316)
T ss_dssp             ----CCEEEEESC-SEEETTSCEEEEEEBTTB-CCSEEEEESSCSSSCH-----H---------HHCCBSSCEEECSCCG
T ss_pred             CCCCCCEeeccCC-CccCCCCCEEEEEEccCC-CceEEEEeCCCcccee-----e---------cCCcceEEEEECCCCc
Confidence            4456788887776 568899999999999876 6789999965431100     0         0001123799999999


Q ss_pred             CCCeEEEEEEecC------CCcceeEEEEEEeC---CceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCcee
Q psy15734         97 TDRGWYMCQINTV------PMTSQKGYLQVVVP---PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI  167 (314)
Q Consensus        97 ~d~G~Y~C~~~~~------~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~  167 (314)
                      +|+|.|+|.+.+.      ...+..+.|.|...   |.+...+  . ..+.+|+.++|.|.+. .+.+.+.|++ ++..+
T Consensus        84 ~D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~--~-~~v~~G~~v~L~C~~~-~~~~~~~w~k-~g~~~  158 (316)
T 3vh8_G           84 AHAGNYTCRGSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHP--G-PLVKSGERVILQCWSD-IMFEHFFLHK-EGISK  158 (316)
T ss_dssp             GGCEEEEEEEBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEES--C-SEEETTCCEEEEEEES-SCCSEEEEEE-TTCCS
T ss_pred             ccCeEEEEEEEcCCCCcceecCCCcEEEEEecCCCCCeEEecC--C-CccCCCCeEEEEEcCC-CCCcEEEEEE-CCCcc
Confidence            9999999998642      22345567777653   4444332  2 2378999999999985 4567899998 44433


Q ss_pred             ecC------------CeeC-----------------------------------------CCeEEcCCCcceeecCccEE
Q psy15734        168 NYN------------GELV-----------------------------------------PPMLTIPNQLEGAFVSQTVE  194 (314)
Q Consensus       168 ~~~------------~~~~-----------------------------------------~p~~~~~~~~~~v~~g~~~~  194 (314)
                      ...            ..+.                                         +|.+...+. ..+.+|++++
T Consensus       159 ~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~  237 (316)
T 3vh8_G          159 DPSRLVGQIHDGVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPG-PKVQAGESVT  237 (316)
T ss_dssp             CCEEEECEEETTEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESC-SCCCTTSCCE
T ss_pred             ccceeeeeecCCCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCC-CeecCCCcEE
Confidence            110            0000                                         233333332 2578899999


Q ss_pred             EEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC-----CceeEEEEE
Q psy15734        195 LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG-----ETDGFIKVY  269 (314)
Q Consensus       195 l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~  269 (314)
                      |.|.+. .|.+.+.|++++...........   ... ......|.|.+++  |+|.|+|.|.|..+     ..+..+.|.
T Consensus       238 L~C~~~-~~~~~~~W~k~g~~~~~~~~~~~---~~~-~~~~~~L~i~~v~--D~G~Y~C~a~n~~~~~~~s~~S~~~~l~  310 (316)
T 3vh8_G          238 LSCSSR-SSYDMYHLSREGGAHERRLPAVR---KVN-RTFQADFPLGPAT--HGGTYRCFGSFRHSPYEWSDPSDPLLVS  310 (316)
T ss_dssp             EEEEES-SCCSEEEEEETTSSCCEEEECEE---CTT-SCEEEEEECC-------CEEEEEEEBTTBTTEECCCCCCEEC-
T ss_pred             EEEECC-CCCcEEEEEECCCcCCCceecee---ccC-CceeEEEEcCCcC--CCEEEEEEeecCCCchhccCCCCcEEEE
Confidence            999997 57889999998654332111100   001 1122489999999  99999999999765     345667777


Q ss_pred             EEecC
Q psy15734        270 VNLVD  274 (314)
Q Consensus       270 V~~~~  274 (314)
                      |...|
T Consensus       311 V~g~p  315 (316)
T 3vh8_G          311 VTGNP  315 (316)
T ss_dssp             -----
T ss_pred             EeCCC
Confidence            76543

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=7.7e-24  Score=161.73  Aligned_cols=175  Identities=26%  Similarity=0.397  Sum_probs=122.5

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|..++..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+.        ...+..+... ....+.|.|.+++.+|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~~-~~~~--------~~~~~~~~~~~~~~~~~L~i~~~~~~d~   72 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDG-AVVQ--------NLDQLYIPVSEQHWIGFLSLKSVERSDA   72 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEETT-EECC--------SSEEEEEEEETTEEEEEEEESSCCGGGC
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEECC-eecC--------CCCceEEEecCCCceEEEEEeecCcccC
Confidence            578888899999999999999999998888899999954 3321        1122222211 12235899999999999


Q ss_pred             eEEEEEEecCCC--cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC-ceEEEcCCCceeecCCeeCCC
Q psy15734        100 GWYMCQINTVPM--TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus       100 G~Y~C~~~~~~~--~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      |.|+|.+.+...  .+..+.|.|..+|.+...+  ....+.+|+.+.|.|.+.+.|.| .+.|++ ++..          
T Consensus        73 G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~-~~~~----------  139 (182)
T 1rhf_A           73 GRYWCQVEDGGETEISQPVWLTVEGVPFFTVEP--KDLAVPPNAPFQLSCEAVGPPEPVTIVWWR-GTTK----------  139 (182)
T ss_dssp             EEEEEEESSCTTCEECCCEEEEEECSCEEEECC--CCEEECTTCCEEEEEEEECSSSCCEEEEEE-TTEE----------
T ss_pred             eEEEEEEEcCCCcEEEEEEEEEEecCCeEEecC--cceEecCCCEEEEEeEecCCCCCCEEEEEc-CCeE----------
Confidence            999999976532  3456788888888766543  44667788888888888887777 788887 3322          


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                              +.....      .     ...|.|.++  +|+|.|+|.|.
T Consensus       140 ----------------------------------------~~~~~~------~-----~~~L~i~~~--~d~G~Y~C~a~  166 (182)
T 1rhf_A          140 ----------------------------------------IGGPAP------S-----PSVLNVTGV--TQSTMFSCEAH  166 (182)
T ss_dssp             ----------------------------------------CSCSEE------S-----SEEEEECCC--SSCEEEEEEEE
T ss_pred             ----------------------------------------CCCCCC------C-----ceEEEEecc--ccCeEEEEEEE
Confidence                                                    111000      1     138999988  58999999999


Q ss_pred             eCCCCce-eEEEEEE
Q psy15734        257 NALGETD-GFIKVYV  270 (314)
Q Consensus       257 n~~g~~~-~~~~l~V  270 (314)
                      |..|... ..+.|.|
T Consensus       167 N~~g~~~s~~~~l~V  181 (182)
T 1rhf_A          167 NLKGLASSRTATVHL  181 (182)
T ss_dssp             ETTEEEECCCEEEEE
T ss_pred             CCCCCcccceEEEEe
Confidence            9999874 4777766

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.92  E-value=9e-24  Score=165.25  Aligned_cols=197  Identities=17%  Similarity=0.246  Sum_probs=134.7

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +.|..++..+.+.+|+++.|.|.+.+.+.+.+.|++++.........   .......++.+..     +.|.|.+++.+|
T Consensus         2 ~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~v~~~D   76 (212)
T 1f97_A            2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-----SGITFSSVTRKD   76 (212)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-----TEEEESCCCGGG
T ss_pred             ceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEEeec-----eeEEEcccCccc
Confidence            45677888999999999999999998888999999966442111100   0112234555543     389999999999


Q ss_pred             CeEEEEEEecCC---CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEE-ecccCCCceEEEcCCCc-eeecCCee
Q psy15734         99 RGWYMCQINTVP---MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECS-AVGYPEPYVAWRREDGK-AINYNGEL  173 (314)
Q Consensus        99 ~G~Y~C~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~-~~~~p~p~~~W~~~~~~-~~~~~~~~  173 (314)
                      +|.|+|.+.+..   .....+.|.|..+|.+....  ....+.+|+.+.|.|. +.+.|.|.+.|++ ++. .+......
T Consensus        77 ~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~-~~~~~l~~~~~~  153 (212)
T 1f97_A           77 NGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTIS--VPSSVTIGNRAVLTCSEHDGSPPSEYSWFK-DGISMLTADAKK  153 (212)
T ss_dssp             CEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEE--CCSEEETTSCEEEEEECSCCBSCCEEEEEE-TTEESBC-----
T ss_pred             CeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccC--CccccCCCCeEEEEEEcccCcCCCEEEEEe-CCcccccccccc
Confidence            999999997642   33556778888888776554  2345778999999998 6788888999998 443 32211000


Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                                                               ........+... ..+     +.|.|.++..+|+|.|+|
T Consensus       154 -----------------------------------------~~~~~~~~~~~~-~~~-----~~L~i~~~~~~d~G~Y~C  186 (212)
T 1f97_A          154 -----------------------------------------TRAFMNSSFTID-PKS-----GDLIFDPVTAFDSGEYYC  186 (212)
T ss_dssp             -----------------------------------------CBSCSSSCEEEC-TTT-----CCEEESSCCGGGCEEEEE
T ss_pred             -----------------------------------------cccccCceeEec-CCC-----ceEEEEecChhhCcEEEE
Confidence                                                     000000111100 112     289999999999999999


Q ss_pred             EEeeCCCCc--eeEEEEEEEec
Q psy15734        254 VAVNALGET--DGFIKVYVNLV  273 (314)
Q Consensus       254 ~a~n~~g~~--~~~~~l~V~~~  273 (314)
                      .|.|..|..  +..+.|.|...
T Consensus       187 ~a~n~~g~~~~s~~~~l~V~~~  208 (212)
T 1f97_A          187 QAQNGYGTAMRSEAAHMDAVEL  208 (212)
T ss_dssp             EEECSSSCCEECCCEEEEEESS
T ss_pred             EEccccCCccccceEEEEEEEe
Confidence            999999988  55667766543

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.92  E-value=6.1e-24  Score=169.71  Aligned_cols=198  Identities=17%  Similarity=0.303  Sum_probs=125.3

Q ss_pred             CCCceecC----CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         20 DMPRFAEP----VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        20 ~~p~~~~~----~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      .+|.|..+    +..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+...     ..........   ..+.|.|.+++
T Consensus        10 ~~P~~~~p~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~-~~~~~~-----~~~~~~~~~~---~~~~L~i~~v~   80 (241)
T 3grw_A           10 GAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNG-REFRGE-----HRIGGIKLRH---QQWSLVMESVV   80 (241)
T ss_dssp             -CCEESSGGGGSCCEEEEETTSEEEEECCEECSSCCEEEEEETT-EECCGG-----GSTTCCEEEG---GGTEEEECSCC
T ss_pred             CCceeEcCCCCCCcceEEcCCCeEEEEEEecCCCCceeEEEECC-cccCCC-----Ccccceeeec---cceEEEEEeCC
Confidence            45666655    34789999999999999998888899999954 322110     0001112211   12379999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEEeCCc---eeeecCcceeEEecCceEEEEEEecccCCCceEEEcC---CCceee
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVVVPPR---ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE---DGKAIN  168 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~---~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~---~~~~~~  168 (314)
                      .+|+|.|+|.+.+. +.......|.|...+.   ......+....+..|+.+.|.|.+.+.|.|.+.|++.   ++..+ 
T Consensus        81 ~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~~~~~~g~~~-  159 (241)
T 3grw_A           81 PSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLKHVEVNGSKV-  159 (241)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEEECCSSSCSS-
T ss_pred             cccCEEEEEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEEcccCCCccc-
Confidence            99999999999764 3344556677765221   1111123455667778888888877777777888772   22111 


Q ss_pred             cCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceee----eEeeCCeeeEEEEEEeecC
Q psy15734        169 YNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED----SRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~----~~~~~~~~~~s~L~i~~~~  244 (314)
                                                                       ........    ..........+.|.|.++.
T Consensus       160 -------------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~  190 (241)
T 3grw_A          160 -------------------------------------------------GPDGTPYVTVLKSWISESVEADVRLRLANVS  190 (241)
T ss_dssp             -------------------------------------------------CTTTCCCEEEEEEEECSBSEEEEEEEECSCC
T ss_pred             -------------------------------------------------CCCCceeeeeeeEeeeeecCCceEEEECcCC
Confidence                                                             11111000    0001111234589999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      .+|+|.|+|.|.|..|....++.|.|..+|..
T Consensus       191 ~~d~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~  222 (241)
T 3grw_A          191 ERDGGEYLCRATNFIGVAEKAFWLSVHGPRAA  222 (241)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEC------
T ss_pred             cccCcEEEEEEecCcceEEEEEEEEecCCCCC
Confidence            99999999999999999999999999877644

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.92  E-value=2.2e-22  Score=178.06  Aligned_cols=277  Identities=15%  Similarity=0.166  Sum_probs=165.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCc----eEEEEEEcC-cee---EEEeeee-----eeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         27 PVANVTATVGKEALMACVVENLRE----YKVAWVKMI-TQT---ILSIHHK-----VVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~----~~v~W~~~~-~~~---~~~~~~~-----~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      .+..+.+.+|++++|.|.+.+.+.    ..+.|||.. +..   +......     .....+|+.+..+. ...++|.|.
T Consensus         6 qp~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   85 (512)
T 1zvo_C            6 ESGPGLVKPSETLSLTCIVSGGPIRRTGYYWGWIRQPPGKGLEWIGGVYYTGSIYYNPSLRGRVTISVDTSRNQFSLNLR   85 (512)
T ss_pred             CCCCEEEcCCCCEEEEEEEcccccCCCCeeEEEEEeCCCCCcEEEEEEecCCCEEECCccCCceEEEecCCCCEEEEEEC
Confidence            456789999999999999976432    789999863 221   1111110     01124577776543 235689999


Q ss_pred             eecCCCCeEEEEEEecCCC--------------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-C
Q psy15734         93 DVQETDRGWYMCQINTVPM--------------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-P  153 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~--------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p  153 (314)
                      +++.+|+|.|.|.+.+...              ......|.|..    +|.+.... +.......++.+.|.|.+.+. |
T Consensus        86 ~v~~~Dsg~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~~~~~~~~~~~v~L~C~~~g~~P  164 (512)
T 1zvo_C           86 SMSAADTAMYYCARGNPPPYYDIGTGSDDGIDVWGQGTTVHVSSAPTKAPDVFPII-SGCRHPKDNSPVVLACLITGYHP  164 (512)
T ss_pred             cCCHHHCEEEEEEEECCCCccccccccccccccccCceEEEecccCCcCCeEEecc-CCcccccCCCeEEEEEEEEeeec
Confidence            9999999999999965421              12335677763    34443221 111101246899999999987 7


Q ss_pred             CC-ceEEEcCCCcee--------ecCCe------------------eC-------------C----------CeEE----
Q psy15734        154 EP-YVAWRREDGKAI--------NYNGE------------------LV-------------P----------PMLT----  179 (314)
Q Consensus       154 ~p-~~~W~~~~~~~~--------~~~~~------------------~~-------------~----------p~~~----  179 (314)
                      .| .+.|++.+....        ..++.                  +.             .          +.+.    
T Consensus       165 ~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~~g~ytC~v~n~~~~~~~~~~~~~~~~~~~~~v~l~~p  244 (512)
T 1zvo_C          165 TSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTSSQLSTPLQQWRQGEYKCVVQHTASKSKKEIFRWPESPKAQASSVPTAQ  244 (512)
T ss_pred             CceEEEEEcCcccCceEecCceecCCCCEEEEEEEEEcHHHcCCceEEEEEEeCCCCceEEEecCCCCCCcCCEEEEeCC
Confidence            65 899998432110        00111                  00             0          0011    


Q ss_pred             ---------------------------------------------------------cCCCcceeecCccEEEEEEEeec
Q psy15734        180 ---------------------------------------------------------IPNQLEGAFVSQTVELHCHTEAF  202 (314)
Q Consensus       180 ---------------------------------------------------------~~~~~~~v~~g~~~~l~C~~~g~  202 (314)
                                                                               .++....+.+|+.+.|.|.+.|.
T Consensus       245 p~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~g~~~~L~C~v~g~  324 (512)
T 1zvo_C          245 PQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYLLTPAVQDLWLRDKATFTCFVVGS  324 (512)
T ss_pred             CchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEEECCChHHhccCCceEEEEEEece
Confidence                                                                     11122234579999999999997


Q ss_pred             CCc--eeEEecCCCeeeecCCc-eeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE-Ee---cC
Q psy15734        203 PAS--LNYWTNEKGDMIITGDD-YEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV-NL---VD  274 (314)
Q Consensus       203 p~p--~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V-~~---~~  274 (314)
                      +++  .+.|++++.. +..... .......+ .|...+.|.|..+..+|.|.|+|.|.|..+... ...+.. ..   ..
T Consensus       325 ~P~~~~i~W~k~g~~-~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~a~n~~~~~~-~~~~~~~~~~~~~~  402 (512)
T 1zvo_C          325 DLKDAHLTWEVAGKV-PTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCTLNHPSLPPQ-RLMALREPAAQAPV  402 (512)
T ss_pred             ECCCeEEEEEECCEe-ccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEEEEeCCCCCC-ceeEEeecCCCCCC
Confidence            443  8899997544 221111 01111123 367778999999999999999999999887653 222222 11   11


Q ss_pred             CCeeEEE-EccccccEe-EEEEEeeccCCC--ccce
Q psy15734        275 GDIFQIR-KMSRLHMGA-YLCIASNGVVPS--VSHR  306 (314)
Q Consensus       275 ~~~~~~~-~~~~~~~g~-~~C~a~~~~~~~--~~w~  306 (314)
                      .+.+.+. .....+... +.|.|.+++++.  +.|.
T Consensus       403 ~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~  438 (512)
T 1zvo_C          403 KLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWL  438 (512)
T ss_pred             CCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEE
Confidence            2333332 222344457 999999987765  5684

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.91  E-value=2.3e-24  Score=170.89  Aligned_cols=199  Identities=16%  Similarity=0.261  Sum_probs=131.2

Q ss_pred             CCCCceecCC----cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCE---EEEeCCceeEEEEE
Q psy15734         19 PDMPRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV---SITFNDHRSWFLHL   91 (314)
Q Consensus        19 ~~~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~~~~~L~i   91 (314)
                      ..+|.|..++    ....+.+|+++.|.|.+.+.+.+.+.|++++ ..+.        ...++   ....   ..+.|.|
T Consensus        13 ~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~-~~~~--------~~~~~~~~~~~~---~~~~L~i   80 (231)
T 3ojm_B           13 KRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFK--------QEHRIGGYKVRN---QHWSLIM   80 (231)
T ss_dssp             CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETT-EECC--------GGGSTTCCEEEG---GGTEEEE
T ss_pred             ccCCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECC-cccc--------ccccccceeeec---CcceEEE
Confidence            3457776655    7889999999999999988888899999954 3321        11111   1111   1237999


Q ss_pred             eeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCce---eeecCcceeEEecCceEEEEEEecccCCCceEEEcC---CC
Q psy15734         92 RDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRI---LLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRE---DG  164 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~---~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~---~~  164 (314)
                      .+++.+|+|.|+|.+.+. +.......|.|..++..   .....+....+..|+.+.|.|.+.+.|.|.+.|++.   ++
T Consensus        81 ~~~~~~d~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~~~~~~g  160 (231)
T 3ojm_B           81 ESVVPSDKGNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNG  160 (231)
T ss_dssp             CSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEEECCBTT
T ss_pred             ecCCcccCEEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEECCCCCC
Confidence            999999999999999765 34445667777664321   111123456677888888888888888888888872   22


Q ss_pred             ceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       165 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      ..+...+.                                +...       ......   ......     +.|.|.++.
T Consensus       161 ~~~~~~~~--------------------------------~~~~-------~~~~~~---~~~~~~-----~~L~i~~~~  193 (231)
T 3ojm_B          161 SKYGPDGL--------------------------------PYLK-------VLKHSG---INSSNA-----EVLALFNVT  193 (231)
T ss_dssp             BSBCTTSC--------------------------------BCEE-------EEEECS---TTCSCT-----TEEEECSCC
T ss_pred             ccccCCCc--------------------------------ceEe-------Eecccc---cccCCc-----cEEEEecCC
Confidence            21110000                                0000       000000   000111     289999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      .+|+|.|+|.|.|..|....++.|.|..+|.+
T Consensus       194 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~  225 (231)
T 3ojm_B          194 EADAGEYICKVSNYIGQANQSAWLTVLPKQQA  225 (231)
T ss_dssp             GGGCEEEEEEEEETTEEEEEEEEEEEECCC--
T ss_pred             HHHCeEEEEEEEeccceEeeEEEEEEecCCCC
Confidence            99999999999999999999999999887654

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.91  E-value=2.7e-23  Score=162.63  Aligned_cols=195  Identities=14%  Similarity=0.175  Sum_probs=114.2

Q ss_pred             EEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCC
Q psy15734         33 ATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPM  111 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~  111 (314)
                      ...++.+.|.|.+.+. +.+.+.|++++ ..+        ..+.++.+...+. ...|.|.+++.+|+|.|+|.+.+.. 
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~g-~~i--------~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y~C~~~n~~-   82 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHNG-SAI--------RYSDRVKTGVTGE-QIWLQINEPTPNDKGKYVMELFDGK-   82 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEETT-EEC--------CCCSSEEEEEETT-EEEEEEESCCGGGCEEEEEEEECSS-
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEECC-EEc--------cCCCeEEEEEeCC-EEEEEECCCCcccCEEEEEEEecCC-
Confidence            3467888999998774 57899999954 332        2334555544332 3379999999999999999997642 


Q ss_pred             cceeEEEEEEeCC--ceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeec
Q psy15734        112 TSQKGYLQVVVPP--RILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFV  189 (314)
Q Consensus       112 ~~~~~~l~v~~~p--~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~  189 (314)
                      ......+.+.+..  ......  ..  . ...      .....+.|.+                    +...+....+.+
T Consensus        83 ~~~~~~~~l~v~~~~~~~~~~--~~--~-~~~------~~~~~~~p~~--------------------~~~~~~~~~v~~  131 (212)
T 2r15_A           83 TGHQKTVDLSGQAYDEAYAEF--QR--L-KQA------AIAEKNRARV--------------------LGGLPDVVTIQE  131 (212)
T ss_dssp             CEEEEEEEECHHHHHHHHHHH--HH--H-HHH------HHHHHHSCEE--------------------EEBCCSEEEEET
T ss_pred             cceEEEEEEEEeeccchhhhc--cc--c-Ccc------cccccCCCcc--------------------cccCCCcEEEcc
Confidence            2222333332110  000000  00  0 000      0000001111                    111122234555


Q ss_pred             CccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEE
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |+.+.|.|.+.|.|.|.+.|+++ +..+....++.+....+.   .+.|.|.++..+|+|.|+|.|.|..|.....+.|.
T Consensus       132 g~~~~l~C~~~g~p~p~v~W~~~-~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~a~N~~g~~~~~~~l~  207 (212)
T 2r15_A          132 GKALNLTCNVWGDPPPEVSWLKN-EKALAQTDHCNLKFEAGR---TAYFTINGVSTADSGKYGLVVKNKYGSETSDFTVS  207 (212)
T ss_dssp             TCCEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEETTT---EEEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEE
T ss_pred             CCeEEEEEEEcCCCCceEEEEEC-CeECccCCCEEEEEcCCC---EEEEEEcCcchHHCeEEEEEEEcCCCcEEEEEEEE
Confidence            66666666666666666666664 444444444444333222   35999999999999999999999999999999988


Q ss_pred             EEec
Q psy15734        270 VNLV  273 (314)
Q Consensus       270 V~~~  273 (314)
                      |..+
T Consensus       208 V~~P  211 (212)
T 2r15_A          208 VFIP  211 (212)
T ss_dssp             EECC
T ss_pred             EEcc
Confidence            8754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.91  E-value=1e-22  Score=160.57  Aligned_cols=194  Identities=19%  Similarity=0.253  Sum_probs=121.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC-----ceEEEEEEcCceeEEEeee-ee------eecCcCEEEEeC--CceeEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR-----EYKVAWVKMITQTILSIHH-KV------VTQNKRVSITFN--DHRSWFL   89 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~v~W~~~~~~~~~~~~~-~~------~~~~~~~~~~~~--~~~~~~L   89 (314)
                      +..++..+.+.+|+++.|.|.+.+.+     ...+.|++++ ..+..... ..      ....+|..+..+  .....+|
T Consensus         4 v~~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~-~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L   82 (222)
T 3sbw_C            4 VTVPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMED-KNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAAL   82 (222)
T ss_dssp             CBCSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETT-EEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEE
T ss_pred             EecCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECC-cEEEEEeCCccccccccccccCceEEccccccCCEEEE
Confidence            34567788999999999999986554     4589999965 32221111 10      011245555432  2234589


Q ss_pred             EEeeecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734         90 HLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY  169 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~  169 (314)
                      .|.+++.+|+|.|+|.+.+.+.....+.|.|..++......  ....+..|+.+.|.|.+.|+|.|.+.|++.++..+  
T Consensus        83 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~~~~--~~~~~~~g~~v~L~C~~~g~P~p~i~W~~~~g~~~--  158 (222)
T 3sbw_C           83 QITDVKLQDAGVYRCMISYGGADYKRITVKVNAPYNKINQR--ILVVDPVTSEHELTCQAEGYPKAEVIWTSSDHQVL--  158 (222)
T ss_dssp             EESSCCGGGCEEEEEEEESSSEEEEEEEEEEEBCCCCCEEE--EEEEETTTTEEEEEEEEEEBSCCEEEEEETTCCEE--
T ss_pred             EEcCcccccCeEEEEEEEeCCCceeEEEEEEECCCCCCCce--eeeeecCCCcEEEEEEecCCCCCeEEEEECCCcee--
Confidence            99999999999999999875555666778887766543221  11245567777777777777777777777323221  


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~  248 (314)
                                                                      ............+ .+...+.|.|   ..+|.
T Consensus       159 ------------------------------------------------~~~~~~~~~~~~~~~~~~~~~l~v---~~~d~  187 (222)
T 3sbw_C          159 ------------------------------------------------SGKTTTTNSKREEKLFNVTSTLRI---NTTTN  187 (222)
T ss_dssp             ------------------------------------------------CCEEEEEECC----CEEEEEEEEE---ECCTT
T ss_pred             ------------------------------------------------cCccceEEEcCCCCCEEEEEEEEE---eccCC
Confidence                                                            1111110111111 1222234444   46899


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.|+|.|.|..|.....+.|.|...
T Consensus       188 g~Y~C~a~n~~g~~~~~~~l~v~~~  212 (222)
T 3sbw_C          188 EIFYCTFRRLDPEENHTAELVIPEL  212 (222)
T ss_dssp             CEEEEEEEETTTTEEEEEEEECCCC
T ss_pred             cEEEEEEEeCccceeeEEEEEecCC
Confidence            9999999999999999988887644

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.91  E-value=5.5e-23  Score=173.01  Aligned_cols=233  Identities=15%  Similarity=0.197  Sum_probs=146.9

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ceeEEEeee-------e--eeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENL--REYKVAWVKMI-TQTILSIHH-------K--VVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~~~~~~~~-------~--~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.  +.+.+.|+|++ +..+.....       .  ......|+.+..+. ...++|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (344)
T 1za6_B            5 VQSGAEVVKPGASVKISCKASGYTFTDHAIHWVKQNPGQRLEWIGYFSPGNDDFKYNERFKGKATLTADTSASTAYVELS   84 (344)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCTTSSCEEEEEECSSSCEEEEEEEETTTTEEEECTTTBTTEEEEEETTTTEEEEEEC
T ss_pred             eCCCCeEEeCCCcEEEEEEcCCccccccEEEEEEECCCCCcEEEEEEecCCCceEECcccCCcEEEEEecCCCEEEEEEC
Confidence            34556889999999999999875  36789999963 222211000       0  01124577776542 345689999


Q ss_pred             eecCCCCeEEEEEEecCC-CcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCc
Q psy15734         93 DVQETDRGWYMCQINTVP-MTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGK  165 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~  165 (314)
                      +++.+|+|.|+|.+.+.. .......|.|..    +|.+....  ....+.+|+.+.|.|.+.|. |. +.+.|++ ++.
T Consensus        85 ~v~~~D~G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~  161 (344)
T 1za6_B           85 SLRSEDTAVYFCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSWNS-GAL  161 (344)
T ss_dssp             SCCGGGCEEEEEEETTTTCEECCCEEEEECSSCCBCCEEEEEC--CSCTTTSSSEEEEEEEEEEEBSSCCCEEETT-TTB
T ss_pred             CCCcccCEEEEEEEecCcceecCcEEEEEecCCCCCCeEEEcc--ccccccCCCcEEEEEEEeeEECCCeEEEEec-CCc
Confidence            999999999999997642 223445677763    44444332  12235689999999999987 65 7999998 443


Q ss_pred             ee---------ecCCee--------------------------------------------------------------C
Q psy15734        166 AI---------NYNGEL--------------------------------------------------------------V  174 (314)
Q Consensus       166 ~~---------~~~~~~--------------------------------------------------------------~  174 (314)
                      .+         ..++..                                                              .
T Consensus       162 ~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~dG~Y~C~a~n~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~  241 (344)
T 1za6_B          162 TSGVHTFPAVLQSSGLYSLSSVVTVPSSSLGTQTYICNVNHKPSNTKVDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPR  241 (344)
T ss_dssp             CTTEEECCCEECTTSCEEEEEEEEEETTHHHHBCEEEEEEEGGGTEEEEEEECCCCC--------------------CCB
T ss_pred             cCceeECCCeECCCCCEEEEEEEEEcHHHcCCCcEEEEEEeCCCCccceEeecccccccccccCCCCCCccccccCCCCc
Confidence            21         011100                                                              0


Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +|.+.+.+.......|..+.|.|.+.|.++  +.+.|++++.. +............++ |...+.|.|.....+|+|.|
T Consensus       242 ~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~-~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~Y  320 (344)
T 1za6_B          242 EPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWESNGQP-ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVF  320 (344)
T ss_dssp             CCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEESSSSC-CCSEEECCCEECTTSCEEEEEEEEECHHHHHTTCEE
T ss_pred             CCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEEECCeE-CCCcEecceEECCCCcEEEEEEEEEChHHccCCCeE
Confidence            122221111111234677999999999643  58899997543 322212222223333 56667888888888899999


Q ss_pred             EEEEeeCCCCc
Q psy15734        252 RCVAVNALGET  262 (314)
Q Consensus       252 ~C~a~n~~g~~  262 (314)
                      +|.|.|.....
T Consensus       321 tC~a~~~~l~~  331 (344)
T 1za6_B          321 SCSVMHEALHN  331 (344)
T ss_dssp             EEEEECTTSTT
T ss_pred             EEEEEcCCCCC
Confidence            99999976543

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=99.91  E-value=3e-24  Score=199.32  Aligned_cols=271  Identities=16%  Similarity=0.120  Sum_probs=93.6

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe--CCceeEEEEEeeecCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF--NDHRSWFLHLRDVQET   97 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~i~~~~~~   97 (314)
                      .+|.+...+....+..|++++|.|.+.+    .+.|++.....         ....++.+..  ++.....|.|.+++.+
T Consensus        30 ~~p~l~~~~~~~~v~~G~~vtL~C~~~~----~v~W~~~~~~~---------~~~~~~~~~~~~~~~~~~~l~I~~~~~~   96 (772)
T 3v2a_R           30 DLPRLSIQKDILTIKANTTLQITCRGQR----DLDWLWPNNQS---------GSEQRVEVTECSDGLFCKTLTIPKVIGN   96 (772)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             CCCEECCCCCeEEEcCCCCEEEEEeccC----CeeeeCCCCCC---------ccCCceeEEEcCCCcEEEEEEECCCcHh
Confidence            4555555566788999999999998763    67898754321         0111222211  1111237999999999


Q ss_pred             CCeEEEEEEecCCCcceeEEEEEEeC--Cceee-ecCcceeEEecC--ceEEEEEEecccCCCceEEEcCC-CceeecCC
Q psy15734         98 DRGWYMCQINTVPMTSQKGYLQVVVP--PRILL-DRTSTDVVVREG--TEVTLECSAVGYPEPYVAWRRED-GKAINYNG  171 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~~~~l~v~~~--p~~~~-~~~~~~~~~~~g--~~~~l~C~~~~~p~p~~~W~~~~-~~~~~~~~  171 (314)
                      |+|.|+|.+. ....+..+.|.|..+  |.+.. ...+....+.+|  +.+.|.|.+.+ |.+.+.|++.. +..+...+
T Consensus        97 d~G~Y~C~~~-~~~~~~~~~v~v~~~~~~~~~~~~~~~~~~~v~~G~~~~v~L~C~~~~-p~~~v~w~~~~~~~~~~~~~  174 (772)
T 3v2a_R           97 DTGAYKCFYR-ETDLASVIYVYVQDYRSPFIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDG  174 (772)
T ss_dssp             ------------------------------------CEEEEEEESSCCCEEEECCCCSC-SSCCEEEEEETTTEEECCCS
T ss_pred             hCEeEEEEEc-CCCEEEEEEEEECCCCCCceEcCcccceeEEEecCCCCeEEEEccCCC-CCcEEEEEecCCCccccCCC
Confidence            9999999986 223334445555432  22221 112345667889  89999999976 77899999830 33222211


Q ss_pred             ee---------C------------------------------------CCeEEc-CCCcceeecCccEEEEEEEee--cC
Q psy15734        172 EL---------V------------------------------------PPMLTI-PNQLEGAFVSQTVELHCHTEA--FP  203 (314)
Q Consensus       172 ~~---------~------------------------------------~p~~~~-~~~~~~v~~g~~~~l~C~~~g--~p  203 (314)
                      ..         .                                    ++.+.+ ++....+.+|+++.|.|.+.+  .|
T Consensus       175 ~~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~~~~s~~~~~~v~~~~~~~v~~~~~~~~~v~~G~~v~L~C~~~~~~~~  254 (772)
T 3v2a_R          175 NRISWDSKKGFTIPSYMISYAGMVFCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV  254 (772)
T ss_dssp             SSCEEETTTEEEEEGGGTTTCSEEEEEEEETTEEEECCEEEEEEECCCEEEEEEECCSCEEEETTCCEEEEEEEEECTTC
T ss_pred             ceeecCCCCCeEecCCChhhCeEEEEEEEECCceEEEEEEEEEEecCccceeeeCCCCceEEecCCcEEEEEEEecCCCC
Confidence            10         0                                    122222 334467899999999999998  45


Q ss_pred             CceeEEecCCCeeeecCCceeee-Eee---CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeE
Q psy15734        204 ASLNYWTNEKGDMIITGDDYEDS-RLI---NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQ  279 (314)
Q Consensus       204 ~p~~~W~~~~~~~~~~~~~~~~~-~~~---~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~  279 (314)
                      .+.+.|++++.... ........ ...   ......+.|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|...+.
T Consensus       255 ~~~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~  333 (772)
T 3v2a_R          255 GIDFNWEYPSSKHQ-HKKLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGLYTCAASSGLMTKKNSTFVRVHEKPFVAFG  333 (772)
T ss_dssp             CCEEEEECC---------CEEEEC-----CCCEEEEEEEEESSCCSTTCSEEEEEEECSSCEEEEEEEEEEECCCC----
T ss_pred             ceeEEEecCCccCC-CceeeeccccccccccceEEEEEEEECcCCcCCCeEEEEEEEcCCcceeEEEEEEEeCCCeeEec
Confidence            67899999754322 11111100 000   22334569999999999999999999999998888888988876533222


Q ss_pred             E-----EEccccccEeEEEEEeeccCCCccce
Q psy15734        280 I-----RKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       280 ~-----~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      .     ..+..++...+.|.+.+.|.+.+.|.
T Consensus       334 ~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~  365 (772)
T 3v2a_R          334 SGMESLVEATVGERVRIPAKYLGYPPPEIKWY  365 (772)
T ss_dssp             --------------------------------
T ss_pred             cCCCCcEEEcCCCcEEEEEEEeeeCCCeEEEE
Confidence            1     12333444469999999999999996

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.91  E-value=5.2e-24  Score=166.78  Aligned_cols=190  Identities=18%  Similarity=0.316  Sum_probs=126.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCce------e-EEEeeeeeee-----cCcCEEEEeC--Cce
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR----EYKVAWVKMITQ------T-ILSIHHKVVT-----QNKRVSITFN--DHR   85 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~~------~-~~~~~~~~~~-----~~~~~~~~~~--~~~   85 (314)
                      +..++..+.+.+|+++.|.|.+.+.+    .+.+.|++.+..      . +.........     ..+|+.+..+  ...
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~   82 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVHFTSNDVKSG   82 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEEESCSCGGGT
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceEEeccCccCC
Confidence            34566788999999999999998765    469999985321      1 1111111111     1446655431  112


Q ss_pred             eEEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCC
Q psy15734         86 SWFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRRED  163 (314)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~  163 (314)
                      .++|.|.+++.+|+|.|+|.+.+. +.....+.|.|..+|.+....  ....+..|+.+.|.|.+ .+.|.|.+.|++.+
T Consensus        83 ~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~~~  160 (214)
T 3jz7_A           83 DASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCF--VDGSEEIGNDFKLKCEPKEGSLPLQFEWQKLS  160 (214)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEE--EESCCBTTCCEEEEEECSBCCSSCEEEEEECS
T ss_pred             cccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceee--eecceecCCcEEEEecCCCCCCCCEEEEEECC
Confidence            357999999999999999999765 344666778888887765432  22235677778888877 67777777777732


Q ss_pred             CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec
Q psy15734        164 GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       164 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +                                                  .........  ....++     .|.|.++
T Consensus       161 ~--------------------------------------------------~~~~~~~~~--~~~~~~-----~L~i~~~  183 (214)
T 3jz7_A          161 D--------------------------------------------------SQTMPTPWL--AEMTSP-----VISVKNA  183 (214)
T ss_dssp             T--------------------------------------------------TCCCCGGGG--GGTTSS-----EEEECSC
T ss_pred             C--------------------------------------------------CCccCccce--eccCCC-----EEEEecC
Confidence            1                                                  111111000  001222     9999999


Q ss_pred             CCCCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        244 LSHQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      ..+|+|.|+|.|.|..|....++.|.|..
T Consensus       184 ~~~d~G~Y~C~a~N~~g~~~~~~~l~V~~  212 (214)
T 3jz7_A          184 SSEYSGTYSCTVQNRVGSDQCMLRLDVVP  212 (214)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEECCBC
T ss_pred             CHHHCEEEEEEEEcCCCcEEEEEEEEEeC
Confidence            99999999999999999999998888763

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.91  E-value=1.5e-23  Score=164.69  Aligned_cols=196  Identities=22%  Similarity=0.374  Sum_probs=128.0

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEe-CCceeEEEEEeeecC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF-NDHRSWFLHLRDVQE   96 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~   96 (314)
                      ...+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+...      ......+.. ++.....|.|.+++.
T Consensus         6 ~~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g-~~~~~~------~~~~~~~~~~~~~~~~~l~i~~v~~   78 (217)
T 2vr9_A            6 QYQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDG-EPVSTN------EKKSHRVQFKDGALFFYRTMQGKKE   78 (217)
T ss_dssp             CCCCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETT-EECCCS------SSSSSEEECTTSCEEESSCCBSSSC
T ss_pred             ccCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECC-cCccCC------CccceeEEecCCceEEEEEeccCCc
Confidence            357899999999999999999999999998888899999954 332211      011111111 111112347889999


Q ss_pred             CCCeEEEEEEecCCCc--ceeEEEEEEe-CCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCCe
Q psy15734         97 TDRGWYMCQINTVPMT--SQKGYLQVVV-PPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGE  172 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~--~~~~~l~v~~-~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~~  172 (314)
                      +|+|.|+|.+.+....  +....|.|.. +|.+...  +....+..|+.+.|.|.+ .+.|.|.+.|++ ++..+.....
T Consensus        79 ~d~G~Y~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~--~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~-~g~~~~~~~~  155 (217)
T 2vr9_A           79 QDGGEYWCVAKNRVGQAVSRHASLQIAVLRDDFRVE--PKDTRVAKGETALLECGPPKGIPEPTLIWIK-DGVPLDDLKA  155 (217)
T ss_dssp             BCCEEEEEEEEETTEEEECCCEEEEECEECCSCSBC--CCCEEECTTSCEEECCBCCCEESCCEEEEEE-TTEEECCCCC
T ss_pred             ccCceEEEEEecCCCccccccceEEEEEeCCCcEEC--CCccEEcCCCeEEEEEECCCCCCCCeEEEEE-CCcCCCcccc
Confidence            9999999999765322  2345566654 3443332  345567788888888887 777888888888 4433210000


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                                                                .......+  .....++     .|.|.++..+|+|.|+
T Consensus       156 ------------------------------------------~~~~~~~~--~~~~~~~-----~L~i~~~~~~d~G~Y~  186 (217)
T 2vr9_A          156 ------------------------------------------MSFGASSR--VRIVDGG-----NLLISNVEPIDEGNYK  186 (217)
T ss_dssp             ------------------------------------------C---CCCS--EEEETTT-----EEEESSCCSTTCEEEE
T ss_pred             ------------------------------------------cccccCCc--EEecCCC-----cEEEeeCCHHHCeEEE
Confidence                                                      00000111  1112333     8999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEEe
Q psy15734        253 CVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|.|..|....+..+.+..
T Consensus       187 C~a~N~~G~~~~~~~~lv~~  206 (217)
T 2vr9_A          187 CIAQNLVGTRESSYAKLIVQ  206 (217)
T ss_dssp             EEEEETTEEEECCCEEEEEC
T ss_pred             EEEEcccceeccccEEEEEE
Confidence            99999999887766554443

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.91  E-value=2.8e-23  Score=161.58  Aligned_cols=171  Identities=15%  Similarity=0.104  Sum_probs=120.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceE-EEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...|.+...+....+.+|+++.|.|.+.+.+.+. +.|++++ ..+.        ...           ..|.|.+++.+
T Consensus         5 ~p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g-~~l~--------~~~-----------~~L~i~~v~~~   64 (204)
T 3sgj_C            5 LPKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNE-SLIS--------SQA-----------SSYFIDAATVD   64 (204)
T ss_dssp             -CBCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETT-EEES--------CCS-----------SEEEESSCCGG
T ss_pred             CCCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECC-EEcc--------cCc-----------cEEEEeccccc
Confidence            3567777778778999999999999998876654 9999954 3221        111           27999999999


Q ss_pred             CCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CCCceEEEcCCCceeecCCeeCCC
Q psy15734         98 DRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      |+|.|+|.+.+ +..+..+.|.|..+|.+...+   ...+.+|+.+.|.|.+.+. |.+.+.|++ ++.           
T Consensus        65 D~G~Y~C~a~n-~~~s~~~~l~V~~~p~~~~~~---~~~v~~G~~v~L~C~~~~~~p~~~v~W~k-~g~-----------  128 (204)
T 3sgj_C           65 DSGEYRCQTQL-STLSDPVQLEVHIGWLLLQAP---RWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NGK-----------  128 (204)
T ss_dssp             GCEEEEEEETT-SBCCCCEEEEEECSSEEEECS---CSEEETTCCEEEEEEEGGGCCCEEEEEEE-TTE-----------
T ss_pred             CCEEEEEEeCC-CcccccEEEEEecCceEecCC---ceeEeCCCcEEEEEEecCCCCCceEEEEE-CCc-----------
Confidence            99999999965 445556778887776554432   2456678888888887654 456777777 322           


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                             .+..       ...+.     .|.|.++..+|+|.|+|.|.
T Consensus       129 ---------------------------------------~~~~-------~~~~~-----~L~i~~v~~~D~G~Y~C~a~  157 (204)
T 3sgj_C          129 ---------------------------------------GRKY-------FHHNS-----DFYIPKATLKDSGSYFCRGL  157 (204)
T ss_dssp             ---------------------------------------EEEE-------EEECC-----CEEESSCCGGGCEEEEEEEE
T ss_pred             ---------------------------------------Eeec-------ccCCc-----eEEECcCCcccCEEEEEEEE
Confidence                                                   1110       01122     89999999999999999999


Q ss_pred             e-CCCCceeEEEEEEEecCCC
Q psy15734        257 N-ALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       257 n-~~g~~~~~~~l~V~~~~~~  276 (314)
                      | ..+..+..+.|.|..++..
T Consensus       158 n~~~~~~s~~~~l~V~~~~~~  178 (204)
T 3sgj_C          158 VGSKNVSSETVQITITQGLAV  178 (204)
T ss_dssp             ETTEEEECCCEEEEEEC----
T ss_pred             eCCCceecCcEEEEEeCcCCC
Confidence            9 4455677888888876544

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=99.91  E-value=2.7e-23  Score=180.56  Aligned_cols=236  Identities=17%  Similarity=0.221  Sum_probs=146.8

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecC-CCce-EEEEEEcCceeEEEe--e-eee-eecCcCEEEEeCCceeEEEEEeee
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVEN-LREY-KVAWVKMITQTILSI--H-HKV-VTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~~-~v~W~~~~~~~~~~~--~-~~~-~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      +|.+...+....+.+|+.+.|.|.+.+ .|.+ .+.|+++ +..+...  . ... ...+..+..      ...|.|.++
T Consensus       116 ~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k~-g~~~~~~~~~~~~~~~~~~~~~~~------~~~L~i~~~  188 (438)
T 1qgc_4          116 APTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKID-GSERQNGVLNSWTDQDSKDSTYSM------SSTLTLTKD  188 (438)
T ss_dssp             CCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEET-TEEECTTEEEEEECCCTTTCCEEE------EEEEEEEHH
T ss_pred             CCEEEecCCChhhccCCceEEEEEEccccCCCcEEEEEEC-CEEcCCCceeccccccCCCCcEEE------EEEEEEeCc
Confidence            565554322222346889999999977 5655 8999994 4433211  0 000 111222222      237999999


Q ss_pred             cCCCCeEEEEEEecCCCcceeEEEEEEeC-CceeeecCcceeEEecCceEEEEEEecccC--CCceEEEcCC-Cceeec-
Q psy15734         95 QETDRGWYMCQINTVPMTSQKGYLQVVVP-PRILLDRTSTDVVVREGTEVTLECSAVGYP--EPYVAWRRED-GKAINY-  169 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~-p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~~-~~~~~~-  169 (314)
                      +.+|+|.|+|.+.+..... ...+.+... +...... +....+.+|+.+.|.|.+.+.|  .+.+.|++.+ +..+.. 
T Consensus       189 ~~~d~G~Y~C~a~n~~~~~-~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~  266 (438)
T 1qgc_4          189 EYERHNSYTCEATHKTSTS-PIVKSFNRNECEVMLVE-SGGGLVKPGGSLKLSCTASGFIFNRCAMSWVRQTPEKRLEWV  266 (438)
T ss_dssp             HHHTCCEEEEEEEETTCSS-CEEEEEETTC-CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEE
T ss_pred             ccCCCCeEEEEEEecccCC-ceecccccccceeEEec-CCceEEecCCcEEEEEEEcccccCCcEEEEEECCCCCCcEEE
Confidence            9999999999998754332 233333321 1111111 3456789999999999999987  6799999841 221100 


Q ss_pred             ----------------CC-------------eeC------------------------------------------CCeE
Q psy15734        170 ----------------NG-------------ELV------------------------------------------PPML  178 (314)
Q Consensus       170 ----------------~~-------------~~~------------------------------------------~p~~  178 (314)
                                      .+             .+.                                          +|.+
T Consensus       267 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v  346 (438)
T 1qgc_4          267 ATISSGGTYTYYPDSVKGRFTISRDNAKNTLYLQMSSLRSADTAMYYCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSV  346 (438)
T ss_dssp             EEECTTSCCEECCGGGTTTEEEEEETTTTEEEEEECSCCGGGCCEEEEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEE
T ss_pred             EEEeecCCceecCcccCCcEEEEeecCCCeEEEEECCCChhhCEEEEEEEEccCCCccceeeCCCEEEEEecCCCCCCeE
Confidence                            00             000                                          2332


Q ss_pred             EcCCCcceeecCccEEEEEEEeec-CCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAF-PAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ...+....+..|+++.|.|.+.|. |.| .+.|++++..+...  ........+.|...+.|.|.++..+| |.|+|.|.
T Consensus       347 ~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~~g~~~~~~--~~~~~~~~g~~~~~s~L~i~~~~~~d-g~Y~C~a~  423 (438)
T 1qgc_4          347 YPLAPGSAAAAASMVTLGCLVKGYFPEPVTVTWNSGSLSSGVH--TFPAVLQSDLYTLSSSVTVPSSTWPS-ETVTCNVA  423 (438)
T ss_dssp             EEECCCGGGCCSSEEEEEEEEESCBSSCCEEEEGGGTCCSSEE--ECCCEEETTEEEEEEEEEEEEEHHHH-SCCEEEEE
T ss_pred             EEcCcccccccCCcEEEEEEeccccCCCcEEEEecCCCCCcee--ecCccccCCcEEEEEEEEEehhhcCC-ceEEEEEE
Confidence            222223346689999999999997 888 99999975432211  11111122336667799999999999 99999999


Q ss_pred             eCCCCceeEEEE
Q psy15734        257 NALGETDGFIKV  268 (314)
Q Consensus       257 n~~g~~~~~~~l  268 (314)
                      |..|.......|
T Consensus       424 n~~g~~~~~~~i  435 (438)
T 1qgc_4          424 HPASSTKVDKKI  435 (438)
T ss_dssp             EGGGTEEEEEEC
T ss_pred             eCCCCcceeeec
Confidence            999876655544

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.91  E-value=2e-22  Score=159.39  Aligned_cols=192  Identities=19%  Similarity=0.265  Sum_probs=114.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCc---eEEEEEEcCceeEEEeee--eee------ecCcCEEEEeCC--ceeEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLRE---YKVAWVKMITQTILSIHH--KVV------TQNKRVSITFND--HRSWFLH   90 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~--~~~~~L~   90 (314)
                      ++.|.+.+.+.+|++++|.|.+.+.+.   ..|.|+|++.........  ...      ....|+......  ...++|.
T Consensus         7 V~~P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~   86 (226)
T 4f80_A            7 VLGPSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALR   86 (226)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEE
Confidence            345667799999999999999976433   479999976543322111  111      112344444332  2346899


Q ss_pred             EeeecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-cCCCceEEEcCCCceeec
Q psy15734         91 LRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEPYVAWRREDGKAINY  169 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p~~~W~~~~~~~~~~  169 (314)
                      |.+++.+|+|.|+|.+.+.. ......+.+..++.....  .....+.+|+.+.|.|.+.+ .|.|.+.|++.++..   
T Consensus        87 I~~v~~~D~G~Y~C~a~n~~-~~~~~~v~~~~~~~~~~~--~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~k~~~~~---  160 (226)
T 4f80_A           87 IHNVTASDSGKYLCYFQDGD-FYEKALVELKVAALGSDL--HVDVKGYKDGGIHLECRSTGWYPQPQIQWSNNKGEN---  160 (226)
T ss_dssp             ESSCCGGGCEEEEEEEEETT-EEEEEEEEEEEEBCCCCC--EEEEEEEETTEEEEEEEEEEEBSCCEEEEECTTSCB---
T ss_pred             EeeCchHHCeeEEEEEECCC-cEEEEEEEEeeccceecc--cceeeeccCCceeeEEEeccCCCCCEEEEEECCceE---
Confidence            99999999999999997642 233334444433322211  23445667788888888776 477777777743222   


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                                                                     +... ........++.  ...+.+.+++.+|+|
T Consensus       161 -----------------------------------------------~~~~-~~~~~~~~~g~--~~v~s~l~v~~~d~G  190 (226)
T 4f80_A          161 -----------------------------------------------IPTV-EAPVVADGVGL--YAVAASVIMRGSSGE  190 (226)
T ss_dssp             -----------------------------------------------CCCE-ECCCEECTTSC--EEEEEEEEECC----
T ss_pred             -----------------------------------------------cCCC-ceEEEECCCCc--EEEEEEEEechhcCc
Confidence                                                           1111 11111112220  114445567789999


Q ss_pred             EEEEEEeeCCCCceeEEEEEEE
Q psy15734        250 SYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .|+|.|.|..|..++++.|.|.
T Consensus       191 ~YtC~a~N~~g~~~~~~~v~v~  212 (226)
T 4f80_A          191 GVSCTIRSSLLGLEKTASISIA  212 (226)
T ss_dssp             CEEEEEEETTTTEEEEEEECCC
T ss_pred             EEEEEEEeCCCCeEEEEEEEEC
Confidence            9999999999999998888774

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.91  E-value=3.8e-23  Score=162.01  Aligned_cols=190  Identities=17%  Similarity=0.255  Sum_probs=120.7

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC--cee-EEEe-ee-eeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI--TQT-ILSI-HH-KVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~-~~~~-~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      |.+..++ .+.+.+|++++|.|.+.+.+.+.+.|++..  ... .... .. .......|+.+.. ....++|.|.+++.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v~~   79 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SGNMATLTISKAQA   79 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ETTEEEEEESSCCG
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cCCEEEEEECCCCh
Confidence            4566667 899999999999999998888999999942  111 1110 00 0011234666554 23345899999999


Q ss_pred             CCCeEEEEEEecCCC----cceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCce
Q psy15734         97 TDRGWYMCQINTVPM----TSQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKA  166 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~----~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~  166 (314)
                      +|+|.|+|.+.+...    ......|.|.    .+|.+...+  ....+.+|+.+.|.|.+.+. |+ +.+.|++ ++..
T Consensus        80 ~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~  156 (213)
T 3mj8_L           80 GDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFP--PSSEELKTNQATLVCMINGFYPADVAVTWEA-DGTP  156 (213)
T ss_dssp             GGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             hhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccC--CCcccccCCcEEEEEEeeceeCCCeEEEEEc-CCcc
Confidence            999999999976543    2445667777    455554432  12223367777777777764 33 2677776 4433


Q ss_pred             eecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-eeeEeeCCeeeEEEEEEeecCC
Q psy15734        167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-EDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       167 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      +.                                                  ..... ......+.+...+.|.|.++..
T Consensus       157 l~--------------------------------------------------~~~~~~~~~~~~~~~~~~s~L~i~~~~~  186 (213)
T 3mj8_L          157 IT--------------------------------------------------QGVKTTQPSKSDSKYMATSYLTMTADAW  186 (213)
T ss_dssp             EC--------------------------------------------------TTEEECCCEEETTEEEEEEEEEEESHHH
T ss_pred             cC--------------------------------------------------CCcccCCcCccCCcEEEEEEEEEeHHHc
Confidence            21                                                  11000 0011112244456899999999


Q ss_pred             CCCeEEEEEEeeCCCCceeEE
Q psy15734        246 HQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      +|+|.|+|.|.|..+....++
T Consensus       187 ~d~G~Y~C~a~n~~~~~~~~~  207 (213)
T 3mj8_L          187 KSRNTFICKVTHGGNTVEKSL  207 (213)
T ss_dssp             HSCSCEEEEEEETTEEEEEEE
T ss_pred             CCCCEEEEEEEECCccEEeee
Confidence            999999999999986655554

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.91  E-value=8.6e-23  Score=160.62  Aligned_cols=186  Identities=16%  Similarity=0.244  Sum_probs=125.8

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ....++|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +        ...          ..+.|.|.+++.+
T Consensus        15 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~-~--------~~~----------~~~~L~i~~v~~~   75 (218)
T 3k0w_A           15 VPRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE-I--------PNG----------NTSELIFNAVHVK   75 (218)
T ss_dssp             ----CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEE-C--------TTC----------CSSEEEETTCCGG
T ss_pred             cCCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEE-C--------CCC----------CCCEEEEccCChh
Confidence            34678899999999999999999999999988899999995432 1        111          1127999999999


Q ss_pred             CCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCC
Q psy15734         98 DRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      |+|.|+|.+.+....  +..+.|.|...+.......                  .+.+..                   +
T Consensus        76 d~G~Y~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~------------------~~~~~~-------------------~  118 (218)
T 3k0w_A           76 DAGFYVCRVNNNFTFEFSQWSQLDVCDIPESFQRSV------------------DGVSES-------------------K  118 (218)
T ss_dssp             GCEEEEEEEECTTCCEECCCEEEEEECCCGGGCTTC------------------CSBCCS-------------------S
T ss_pred             hCeEeEEEEEcCCCCceeeEEEEEEEccCccccccc------------------ccccCC-------------------C
Confidence            999999999765322  4446677766542211000                  000000                   1


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+....+..|+.+.|.|.+.|.|.|.+.|++++ ..+....        ..     .|.|.++..+|+|.|+|.|
T Consensus       119 p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~~-~~~~~~~--------~~-----~L~i~~v~~~d~G~Y~C~a  184 (218)
T 3k0w_A          119 LQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE-LPLTHET--------KK-----LYMVPYVDLEHQGTYWCHV  184 (218)
T ss_dssp             CEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEETT-EECTTCC--------SS-----EEEESSCCGGGCEEEEEEE
T ss_pred             ceEEECCCceeecCCCcEEEEEEecccCCCeEEEEECC-EECCCCC--------CC-----EEEEeecChhcCEEEEEEE
Confidence            12222333345667888888888888888888888753 3232221        12     8999999999999999999


Q ss_pred             eeCCCC-ceeEEEEEEEec
Q psy15734        256 VNALGE-TDGFIKVYVNLV  273 (314)
Q Consensus       256 ~n~~g~-~~~~~~l~V~~~  273 (314)
                      .|..|. .+..+.|.|...
T Consensus       185 ~n~~g~~~s~~~~l~V~~~  203 (218)
T 3k0w_A          185 YNDRDSQDSKKVEIIIDEL  203 (218)
T ss_dssp             ECSSCEEECCCEEEEECC-
T ss_pred             EcCCCCceeeeEEEEEeCC
Confidence            998887 567777777654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.90  E-value=1.2e-22  Score=159.23  Aligned_cols=187  Identities=16%  Similarity=0.128  Sum_probs=112.9

Q ss_pred             CCcceEEEcC--CcEEEEEEecCCCceEEEEEEc--CceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         27 PVANVTATVG--KEALMACVVENLREYKVAWVKM--ITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        27 ~~~~~~v~~g--~~~~l~C~~~~~~~~~v~W~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .+..+.+.+|  +++.|.|.+.+ +.+.+.|++.  ++..+        ..+.++.....    ..|.|.+++.+|+|.|
T Consensus        13 ~p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~--------~~~~~~~~~~~----~~l~I~~v~~~D~G~Y   79 (213)
T 2x1w_L           13 QHGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFV--------PDGNRISWDSK----KGFTIPSYMISYAGMV   79 (213)
T ss_dssp             -CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEEC--------CCSSSCEEETT----TEEEEEGGGTTTCSEE
T ss_pred             CceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccc--------cCCCcccccCC----ccEEEccCChhcCceE
Confidence            3578999999  99999999976 6689999985  34322        11223322211    1699999999999999


Q ss_pred             EEEEecCCCcce--eEEEEEEe--CCceeeecCcceeEEecCceEEEEEEecccC--CCceEEEcCCCceeecCCeeCCC
Q psy15734        103 MCQINTVPMTSQ--KGYLQVVV--PPRILLDRTSTDVVVREGTEVTLECSAVGYP--EPYVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus       103 ~C~~~~~~~~~~--~~~l~v~~--~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      +|.+.+.+....  .+.|.|..  +|.+...+ +....+.+|+.++|.|.+.+.|  .+.+.|++ ++..+.        
T Consensus        80 ~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~~-~g~~~~--------  149 (213)
T 2x1w_L           80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSP-SHGIELSVGEKLVLNCTARTELNVGIDFNWEY-PSSKHQ--------  149 (213)
T ss_dssp             EEEEC----CEECCCEEEEECBCCEEEEEEES-CSCEEEETTCCEEEEEEEEECTTBCCEEEEEC-SCSSCC--------
T ss_pred             EEEEEECCeeEEEEEEEEEEeCCcccceEEcC-CCCeEEcCCCCEEEEEEEECCCCCceEEEEEe-cCCccc--------
Confidence            999976433322  24555533  12222222 2333566777777777777643  23567766 222110        


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                   .....    ........     ....+...++|.|.+++.+|+|.|+|.|.
T Consensus       150 -----------------------------~~~~~----~~~~~~~~-----~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~  191 (213)
T 2x1w_L          150 -----------------------------HKKLV----NRDLKTQS-----GSEMKKFLSTLTIDGVTRSDQGLYTCAAS  191 (213)
T ss_dssp             -----------------------------SEEEE----EEEECCCS-----SCSCEEEEEEEEESSCCGGGCEEEEEEEE
T ss_pred             -----------------------------eEEEe----cccccccc-----CccceeeeEEEEECCCCcccCEEEEEEEe
Confidence                                         00000    00000000     00001223489999999999999999999


Q ss_pred             eCCCCceeEEEEEEEecC
Q psy15734        257 NALGETDGFIKVYVNLVD  274 (314)
Q Consensus       257 n~~g~~~~~~~l~V~~~~  274 (314)
                      |..|.....+.|.|..+|
T Consensus       192 N~~g~~~~~~~l~V~~~p  209 (213)
T 2x1w_L          192 SGLMTKKNSTFVRVHEDP  209 (213)
T ss_dssp             CSSCEEEEEEEEEEEC--
T ss_pred             cCCCcEEEEEEEEEeccc
Confidence            999999999999987653

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.90  E-value=4.8e-24  Score=166.41  Aligned_cols=196  Identities=18%  Similarity=0.261  Sum_probs=132.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeee---eeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHK---VVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ++.|..++..+.+.+|+++.|.|.+.+.+.+.+.|++++..........   ......++.+..     +.|.|.+++.+
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-----~~L~i~~~~~~   78 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTRE   78 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCTT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEeec-----cEEEEeeCCHH
Confidence            4566778888999999999999999988889999999654421111000   011233554433     37999999999


Q ss_pred             CCeEEEEEEecCC---CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCCee
Q psy15734         98 DRGWYMCQINTVP---MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGEL  173 (314)
Q Consensus        98 d~G~Y~C~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~~~  173 (314)
                      |+|.|+|.+.+..   ..+..+.|.|..+|.+....  ....+..|+.+.|.|.+ .+.|.|.+.|++ ++..+......
T Consensus        79 d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~--~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~~~~~~~~~  155 (209)
T 1nbq_A           79 DTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVN--IPSSATIGNRAVLTCSEQDGSPPSEYTWFK-DGIVMPTNPKS  155 (209)
T ss_dssp             SCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCC--CBSEEETTSCEEECCCCCSCBSCCEEEEEE-TTCCCCSCSSS
T ss_pred             HCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcc--cccceecCCEEEEEEeCCCCCCCceeEEEE-CCeeCCCcccc
Confidence            9999999997642   33456678888888765543  23457789999999986 788888999998 44433211100


Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                                                               ........+... ...     +.|.|.++..+|+|.|+|
T Consensus       156 -----------------------------------------~~~~~~~~~~~~-~~~-----~~L~i~~~~~~d~G~Y~C  188 (209)
T 1nbq_A          156 -----------------------------------------TRAFSNSSYVLN-PTT-----GELVFDPLSASDTGEYSC  188 (209)
T ss_dssp             -----------------------------------------SSSCTTCCCCCC-TTT-----CCEEESSCCGGGCCCEEE
T ss_pred             -----------------------------------------ceeeeccceEEc-CCc-----ceEEEEeccccCCeEEEE
Confidence                                                     000000111110 011     289999999999999999


Q ss_pred             EEeeCCCCc--eeEEEEEEE
Q psy15734        254 VAVNALGET--DGFIKVYVN  271 (314)
Q Consensus       254 ~a~n~~g~~--~~~~~l~V~  271 (314)
                      .|.|..|..  +..+.|.|.
T Consensus       189 ~a~n~~g~~~~s~~v~l~V~  208 (209)
T 1nbq_A          189 EARNGYGTPMTSNAVRMEAV  208 (209)
T ss_dssp             EEECSSSCCEECCCBCCEEE
T ss_pred             EEeCCcCcccccccEEEEEe
Confidence            999999988  444555543

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.90  E-value=5.7e-23  Score=157.24  Aligned_cols=173  Identities=17%  Similarity=0.280  Sum_probs=112.0

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeee-----ecCcCEEEEeC--CceeEEEEEeeecCCCCeEE
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV-----TQNKRVSITFN--DHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .+.+.+|+++.|.|.+.+.+.+.+.|++++...+........     ....++.....  .....+|.|.+++.+|+|.|
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~i~~v~~~D~G~Y   83 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   83 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCCeEEEEEecCCHHHCEEE
Confidence            567999999999999988888899999966432322111100     01223333321  11233699999999999999


Q ss_pred             EEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCC
Q psy15734        103 MCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN  182 (314)
Q Consensus       103 ~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~  182 (314)
                      +|.+.+.   ...+.|.|..   +. .  +....+.+|+.+.|.|.+.+.|.|.+.|++                     
T Consensus        84 ~C~~~~~---~~~~~l~V~~---~~-~--~~~~~v~~g~~~~l~C~~~~~p~~~v~W~~---------------------  133 (184)
T 2ny1_B           84 ICEVEDQ---KEEVQLLVFG---LT-A--NSDTHLLQGQSLTLTLESPPGSSPSVQCRS---------------------  133 (184)
T ss_dssp             EEEETTE---EEEEEEEEEE---EE-E--SSCSEEETTCCEEEEEECCTTCCCEEEEEC---------------------
T ss_pred             EEEEEcC---CCcEEEEEEE---ec-C--CCCceeecCCCEEEEEEcCCCCCCEEEEEe---------------------
Confidence            9999643   1234444442   11 1  122234555555555555555555555554                     


Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                                                   +++...          ..+.     .|.|.++..+|+|.|+|.|.|..+..
T Consensus       134 -----------------------------~~~~~~----------~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~~~~  169 (184)
T 2ny1_B          134 -----------------------------PRGKNI----------QGGK-----TLSVSQLELQDSGTWTCTVLQNQKKV  169 (184)
T ss_dssp             -----------------------------TTSCEE----------EESS-----EEEESSCCGGGCEEEEEEEEETTEEE
T ss_pred             -----------------------------CCCccc----------cCce-----EEEEecCCcCCCeEEEEEEEECCceE
Confidence                                         333221          1222     99999999999999999999999999


Q ss_pred             eeEEEEEEEecCCC
Q psy15734        263 DGFIKVYVNLVDGD  276 (314)
Q Consensus       263 ~~~~~l~V~~~~~~  276 (314)
                      ...+.|.|...|.+
T Consensus       170 ~~~~~l~V~~~p~~  183 (184)
T 2ny1_B          170 EFKIDIVVLAFQKA  183 (184)
T ss_dssp             EEEEEEEEECCCC-
T ss_pred             EEEEEEEEEecCCC
Confidence            99999999887653

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.90  E-value=5e-23  Score=165.26  Aligned_cols=139  Identities=19%  Similarity=0.269  Sum_probs=94.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC---CCceEEEEEEcCcee---EEEeee------------------eeeecCcCEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN---LREYKVAWVKMITQT---ILSIHH------------------KVVTQNKRVSI   79 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~---~~~~~~------------------~~~~~~~~~~~   79 (314)
                      +..++..+.+.+|+++.|.|.+.+   .+.+.+.|++++...   ......                  ......+|+.+
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445677899999999999999976   678899999965321   111100                  00112345444


Q ss_pred             EeCCceeEEEEEeeecCCCCeEEEEEEecCCCc------ceeEEEEEEeC--CceeeecCcceeEEecCceEEEEEEecc
Q psy15734         80 TFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT------SQKGYLQVVVP--PRILLDRTSTDVVVREGTEVTLECSAVG  151 (314)
Q Consensus        80 ~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~------~~~~~l~v~~~--p~~~~~~~~~~~~~~~g~~~~l~C~~~~  151 (314)
                      ..+  ..++|.|.+++.+|+|.|+|.+.+....      ...+.|.|..+  |.......+....+.+|+.+.|.|.+.+
T Consensus        85 ~~~--~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g  162 (250)
T 2fbo_J           85 ANL--AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTD  162 (250)
T ss_dssp             SCT--TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEES
T ss_pred             ccC--CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecC
Confidence            332  2347999999999999999999765322      33667777764  2222223345567778999999999999


Q ss_pred             cCCCceEEEcCCCc
Q psy15734        152 YPEPYVAWRREDGK  165 (314)
Q Consensus       152 ~p~p~~~W~~~~~~  165 (314)
                      .|.|.+.|++ ++.
T Consensus       163 ~p~p~v~W~k-~~~  175 (250)
T 2fbo_J          163 CANANVTWYT-GPT  175 (250)
T ss_dssp             CTTCEEEEEE-EEE
T ss_pred             CCCCeeEEEe-CCC
Confidence            8888999998 443

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.90  E-value=3.5e-23  Score=161.95  Aligned_cols=192  Identities=21%  Similarity=0.338  Sum_probs=121.6

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCc-eeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH-RSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~~~   97 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+.....   ....+.....++. ....|.|.+++.+
T Consensus         7 ~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~-~~~~~~~~---~~~~~~~~~~~~~~~~~~l~i~~~~~~   82 (212)
T 2v9r_A            7 DFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGG-ERVETDKD---DPRSHRMLLPSGSLFFLRIVHGRKSRP   82 (212)
T ss_dssp             CEEEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETT-EECCCTTT---CTTCSEEECTTSCEEESSCCCCSSCCC
T ss_pred             cCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECC-EEeecccc---ccccceEEecCCcEEEEEEEecCCCcc
Confidence            45788888999999999999999999988888899999954 32211000   0000111111110 0113556678999


Q ss_pred             CCeEEEEEEecCCCc--ceeEEEEEEeCC-ceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCCee
Q psy15734         98 DRGWYMCQINTVPMT--SQKGYLQVVVPP-RILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGEL  173 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~--~~~~~l~v~~~p-~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~~~  173 (314)
                      |+|.|+|.+.+....  +....|.|...+ .+...  +....+..|+.+.|.|.+ .+.|.|.+.|++ ++.        
T Consensus        83 d~G~Y~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~--~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~-~~~--------  151 (212)
T 2v9r_A           83 DEGVYVCVARNYLGEAVSHDASLEVAILRDDFRQN--PSDVMVAVGEPAVMECQPPRGHPEPTISWKK-DGS--------  151 (212)
T ss_dssp             SCEEEEEEEEETTEEEECCCEEEEECEECSSCSBC--CCCEEEETTSCEEEECBCCCEESCCEEEEEE-TTE--------
T ss_pred             cCeEEEEEEECCCCceeecceEEEEEeccccceeC--CCceEecCCCcEEEEEecCCCCCCCEEEEEE-CCc--------
Confidence            999999999765322  334566665433 22221  234556677777777776 666666777776 322        


Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                                                                .+...... . ...++     .|.|.++..+|+|.|+|
T Consensus       152 ------------------------------------------~l~~~~~~-~-~~~~~-----~L~i~~~~~~d~G~Y~C  182 (212)
T 2v9r_A          152 ------------------------------------------PLDDKDER-I-TIRGG-----KLMITYTRKSDAGKYVC  182 (212)
T ss_dssp             ------------------------------------------EECTTSTT-E-EEETT-----EEEESSCCGGGCEEEEE
T ss_pred             ------------------------------------------cCCCCcce-E-EccCC-----eEEEeeCCHhhCeeEEE
Confidence                                                      22211111 1 11233     89999999999999999


Q ss_pred             EEeeCCCCcee-EEEEEEEecC
Q psy15734        254 VAVNALGETDG-FIKVYVNLVD  274 (314)
Q Consensus       254 ~a~n~~g~~~~-~~~l~V~~~~  274 (314)
                      .|.|..|.... .+.|.|..+|
T Consensus       183 ~a~N~~g~~~s~~~~l~V~~~P  204 (212)
T 2v9r_A          183 VGTNMVGERESEVAELTVLERP  204 (212)
T ss_dssp             EEEETTEEEECCCEEEEEEC--
T ss_pred             EEecccCceecceEEEEEEeCc
Confidence            99999998654 4888887664

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.90  E-value=6e-22  Score=151.50  Aligned_cols=170  Identities=17%  Similarity=0.309  Sum_probs=119.1

Q ss_pred             ceEEEcCCcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         30 NVTATVGKEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ...+.+|+++.|.|.+.+.+.+  .+.|++++ ..+..        ....      .....|.|.  +.+|+|.|+|.+.
T Consensus         7 ~~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~~-~~l~~--------~~~~------~~~~~l~i~--~~~d~G~Y~C~~~   69 (184)
T 3b5h_A            7 TTVEDLGSKILLTCSLNDSATEVTGHRWLKGG-VVLKE--------DALP------GQKTEFKVD--SDDQWGEYSCVFL   69 (184)
T ss_dssp             EEEEEETTEEEEEEEEESCSSCCCEEEEESSS-EEEEC--------TTCC------CSEEEEEEC--GGGCCEEEEEEEE
T ss_pred             EEEEecCCCEEEEEECCCCCCCceEEEEEeCC-EEeec--------cccc------CCcEEEEEe--chhhCeEEEEEEE
Confidence            3568899999999999876655  99999944 43321        1110      011256666  6899999999998


Q ss_pred             cCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccC-CCceEEEcCCCceeecCCeeCCCeEEcCCCcce
Q psy15734        108 TVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAINYNGELVPPMLTIPNQLEG  186 (314)
Q Consensus       108 ~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~  186 (314)
                      +  .......|.|..+|.+...+  ....+.+|+.+.|.|.+.+.| .|.+.|++.++.                     
T Consensus        70 n--~~~~~~~l~V~~~P~~~~~~--~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~~~~~---------------------  124 (184)
T 3b5h_A           70 P--EPMGTANIQLHGPPRVKAVK--SSEHINEGETAMLVCKSESVPPVTDWAWYKITDS---------------------  124 (184)
T ss_dssp             S--TTSCEEEEEECCSCCCEESC--SEEEECTTSCEEEEEECCCSSCCCEEEEEECCSS---------------------
T ss_pred             C--CcCcEEEEEEecCCceeecC--CCcEEcCCCcEEEEEEECCCCCCCeEEEEEcCCC---------------------
Confidence            6  33466788888888876654  455678899999999988888 788999883210                     


Q ss_pred             eecCccEEEEEEEeecCCceeEEecCCCeeeec--CCceeeeEeeCCeeeEEEEEEeecC-CCCCeEEEEEEeeCCCCce
Q psy15734        187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT--GDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~--~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y~C~a~n~~g~~~  263 (314)
                                                +...+..  ..++.+... +   ..+.|.|.++. .+|+|.|+|.|.|..|...
T Consensus       125 --------------------------~~~~~~~~~~~~~~~~~~-~---~~~~L~i~~v~~~~d~G~Y~C~a~N~~g~~~  174 (184)
T 3b5h_A          125 --------------------------EDKALMNGSESRFFVSSS-Q---GRSELHIENLNMEADPGQYRCNGTSSKGSDQ  174 (184)
T ss_dssp             --------------------------SCEECCTTGGGTEEEEEE-T---TEEEEEECSCCTTTSSEEEEEEEEETTEEEE
T ss_pred             --------------------------CCEEeecCCCCEEEEEec-C---CeeEEEEeeccccccCceEEEEEEeCCCcce
Confidence                                      1111111  122222211 1   12489999999 8999999999999999998


Q ss_pred             eEEEEEEE
Q psy15734        264 GFIKVYVN  271 (314)
Q Consensus       264 ~~~~l~V~  271 (314)
                      ..+.|.|.
T Consensus       175 ~~~~l~V~  182 (184)
T 3b5h_A          175 AIITLRVR  182 (184)
T ss_dssp             EEEEEEEC
T ss_pred             EEEEEEEe
Confidence            88888875

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.90  E-value=3.7e-22  Score=151.45  Aligned_cols=168  Identities=15%  Similarity=0.142  Sum_probs=116.4

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceE-EEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYK-VAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~-v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ...+|.+...+....+.+|++++|.|.+.+.+.+. +.|++++ ..+.        .           ....|.|.+++.
T Consensus         4 ~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~-~~~~--------~-----------~~~~L~i~~~~~   63 (175)
T 1fnl_A            4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE-SLIS--------S-----------QASSYFIDAATV   63 (175)
T ss_dssp             CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETT-EEEE--------S-----------SCSEEEESSCCG
T ss_pred             CCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECC-EEcc--------C-----------CceEEEEeCCCc
Confidence            34578888888888999999999999998876555 7899954 3221        1           112799999999


Q ss_pred             CCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCC-CceEEEcCCCceeecCCeeCC
Q psy15734         97 TDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE-PYVAWRREDGKAINYNGELVP  175 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p~~~W~~~~~~~~~~~~~~~~  175 (314)
                      +|+|.|+|.+.+. ..+..+.|.|..++.....   ....+.+|+.+.|.|.+.+.++ +.+.|++ ++           
T Consensus        64 ~d~G~Y~C~~~n~-~~s~~~~l~V~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k-~g-----------  127 (175)
T 1fnl_A           64 NDSGEYRCQTNLS-TLSDPVQLEVHIGWLLLQA---PRWVFKEEDPIHLRCHSWKNTALHKVTYLQ-NG-----------  127 (175)
T ss_dssp             GGCEEEEEECSSS-CCCCCEEEEEECSSEEEEC---SCSEEETTCCEEEEEEECTTCCCEEEEEEE-TT-----------
T ss_pred             ccCEEEEEEeeCC-cccccEEEEEeCCCceeeC---CCceecCCCCEEEEEEcCCCCCceEEEEEE-CC-----------
Confidence            9999999999753 3355667777654433222   2244667777777777766544 3677776 32           


Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                                                             ..+..       ...+     ..|.|.+++.+|+|.|+|.|
T Consensus       128 ---------------------------------------~~~~~-------~~~~-----~~L~i~~v~~~d~G~Y~C~a  156 (175)
T 1fnl_A          128 ---------------------------------------KDRKY-------FHHN-----SDFHIPKATLKDSGSYFCRG  156 (175)
T ss_dssp             ---------------------------------------EEEEE-------EEEC-----CCEEESSCCGGGCEEEEEEE
T ss_pred             ---------------------------------------eEccC-------CCCC-----CEEEEcccChhhCeEEEEEE
Confidence                                                   21110       0112     28999999999999999999


Q ss_pred             eeCCCC-ceeEEEEEEEe
Q psy15734        256 VNALGE-TDGFIKVYVNL  272 (314)
Q Consensus       256 ~n~~g~-~~~~~~l~V~~  272 (314)
                      .|..+. .+..+.|.|..
T Consensus       157 ~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          157 LVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EETTEEEECCCEEEEEEC
T ss_pred             EcCCCCccCccEEEEEeC
Confidence            997653 45667777653

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.90  E-value=1.3e-23  Score=177.09  Aligned_cols=188  Identities=18%  Similarity=0.194  Sum_probs=128.6

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ....+|.+...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.......        .+.    .....+.|.|.+++.
T Consensus       154 ~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~--------~~~----~~~~~~~L~i~~v~~  221 (347)
T 2ifg_A          154 ASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATV--------MKS----GGLPSLGLTLANVTS  221 (347)
T ss_dssp             TTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEE--------CCC----CCSSEEEEEEESCCS
T ss_pred             ccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeeccc--------ccc----eecccceEEEeeCCh
Confidence            34568899888889999999999999999998889999999664322110        000    112334899999999


Q ss_pred             CCCe-EEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC
Q psy15734         97 TDRG-WYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV  174 (314)
Q Consensus        97 ~d~G-~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~  174 (314)
                      +|+| .|+|.+.+. +.....+.|.|..+|.+ ..     ....+|+.+.|.|.+.|.|.|.+.|++ ++..+       
T Consensus       222 ~D~G~~Y~C~a~n~~g~~~~~~~l~V~~~P~i-~~-----~~~~~g~~v~l~C~~~g~P~p~i~W~~-~g~~l-------  287 (347)
T 2ifg_A          222 DLNRKNVTCWAENDVGRAEVSVQVNVSFPASV-QL-----HTAVEMHHWCIPFSVDGQPAPSLRWLF-NGSVL-------  287 (347)
T ss_dssp             TTTTCCEEECCEETTEECCEEECCCCBEEEEE-EE-----CCCEESSSEEEEEEEEEESCCEEEEEE-TTEEC-------
T ss_pred             HHCCCeEEEEEEcCCCCEEEEEEEEEcCCCee-ee-----ccCccCceEEEEEEeeecCCCcEEEEe-CCEEC-------
Confidence            9999 999999765 33445555666555554 11     113456777777777777777777776 43322       


Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEee---CCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                                                                 ............   +......+|.|.++..+|+|.|
T Consensus       288 -------------------------------------------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y  324 (347)
T 2ifg_A          288 -------------------------------------------NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNY  324 (347)
T ss_dssp             -------------------------------------------CCCSSEEEEECCCCTTCCCEEEEEEESSCCGGGCEEE
T ss_pred             -------------------------------------------CCCcceeeEEEeecCCCcccceEEEECCCCcccCceE
Confidence                                                       111111111000   1111234899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEec
Q psy15734        252 RCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      +|.|.|..|...+++.|.|..+
T Consensus       325 ~C~a~N~~G~~~~~~~l~V~~~  346 (347)
T 2ifg_A          325 TLLAANPFGQASASIMAAFMDN  346 (347)
T ss_dssp             EEEEEETTEEEEEEEEECSCCC
T ss_pred             EEEEecCCCceeeEEEEEecCC
Confidence            9999999999999988887654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.90  E-value=1e-22  Score=154.64  Aligned_cols=170  Identities=21%  Similarity=0.247  Sum_probs=117.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..+|.+...+..+.+.+|+++.|.|.+.+.+.+ .+.|++++ ..+        ..+           ...|.|.+++.+
T Consensus         2 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~-~~~--------~~~-----------~~~L~i~~v~~~   61 (176)
T 1f2q_A            2 PQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNG-SLS--------EET-----------NSSLNIVNAKFE   61 (176)
T ss_dssp             --CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETT-EEC--------SCC-----------SSEEEECSCCGG
T ss_pred             CCCCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECC-eEC--------CCC-----------ceEEEEecccee
Confidence            356888888888899999999999999887663 69999954 321        111           127999999999


Q ss_pred             CCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCCeeCCC
Q psy15734         98 DRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      |+|.|+|.+.+. ..+..+.|.|..++.....   ....+.+|+.+.|.|.+. +.|.+.+.|++ ++..          
T Consensus        62 d~G~Y~C~~~~~-~~s~~~~l~V~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g~~----------  126 (176)
T 1f2q_A           62 DSGEYKCQHQQV-NESEPVYLEVFSDWLLLQA---SAEVVMEGQPLFLRCHGWRNWDVYKVIYYK-DGEA----------  126 (176)
T ss_dssp             GCEEEEEECTTS-SCCCCEEEEEECSSEEEEE---SCSEEETTSCEEEEEEEGGGCCEEEEEEEE-TTEE----------
T ss_pred             cCEEEEEEcCCc-cccccEEEEEeCcceeecC---CcceeeCCCCEEEEEEecCCCCceEEEEEE-CCEE----------
Confidence            999999999653 3355667777744433322   224566778888888774 44556777777 3321          


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                              +...       ..+.     .|.|.++..+|+|.|+|.|.
T Consensus       127 ----------------------------------------~~~~-------~~~~-----~L~i~~v~~~d~G~Y~C~a~  154 (176)
T 1f2q_A          127 ----------------------------------------LKYW-------YENH-----NISITNATVEDSGTYYCTGK  154 (176)
T ss_dssp             ----------------------------------------CCSC-------CCSS-----EEEESSCCGGGCEEEEEEEE
T ss_pred             ----------------------------------------Eeee-------cCCC-----eEEECCCCcccCEEEEEEEE
Confidence                                                    1100       0112     99999999999999999999


Q ss_pred             eCCC-CceeEEEEEEEecCC
Q psy15734        257 NALG-ETDGFIKVYVNLVDG  275 (314)
Q Consensus       257 n~~g-~~~~~~~l~V~~~~~  275 (314)
                      |..+ ..+..+.|.|..+|.
T Consensus       155 n~~~~~~s~~~~l~V~~~p~  174 (176)
T 1f2q_A          155 VWQLDYESEPLNITVIKAPR  174 (176)
T ss_dssp             ETTEEEECCCEEEEEECSCC
T ss_pred             eCCcceEecCEEEEEecCCC
Confidence            9644 345668888887653

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.89  E-value=2.1e-22  Score=155.94  Aligned_cols=183  Identities=14%  Similarity=0.115  Sum_probs=113.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+. ..+.+|++++|.|.+.+.+. .+.|+|++.. +...      ..... .   ......|.|.+++.+|
T Consensus         3 ~~~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~-~~~~------~~~~~-~---~~~~~~L~i~~v~~~D   69 (198)
T 1ugn_A            3 LPKPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKT-APWI------TRIPQ-E---LVKKGQFPIPSITWEH   69 (198)
T ss_dssp             CCCCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSC-CHHH------HTSCH-H---HHTTTEEEESSCCGGG
T ss_pred             CCCCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCcc-cccc------ccccc-c---CCcccEEEECCCCHHH
Confidence            35678877676 48999999999999988665 7999995532 2100      00000 0   0011279999999999


Q ss_pred             CeEEEEEEecCC----CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTVP----MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~----~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~  171 (314)
                      +|.|+|.+.+..    ..+..+.|.|..   +|.+...   ....+.+|+.+.|.|.+.+. .+.+.|++ ++..+    
T Consensus        70 ~G~Y~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~---~~~~v~~G~~v~L~C~~~~~-~~~v~W~k-~g~~~----  140 (198)
T 1ugn_A           70 TGRYRCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQ---PSPVVNSGGNVTLQCDSQVA-FDGFILCK-EGEDE----  140 (198)
T ss_dssp             CEEEEEEEEETTTEECCCCCCEEEEEECSSCCCEEEEE---SCSEEETTCCEEEEEECSSC-CSEEEEEE-C--------
T ss_pred             CeEEEEEEECCCCCcccCCccEEEEEcccccCCccccC---CccccCCCCcEEEEEecCCC-CcEEEEEE-CCCcc----
Confidence            999999997653    234556777766   2333322   12456677788888877766 56777777 32211    


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                                                                   ......+... ..+  .....|.|.+++.+|+|.|
T Consensus       141 ---------------------------------------------~~~~~~~~~~-~~~--~~~~~L~i~~v~~~D~G~Y  172 (198)
T 1ugn_A          141 ---------------------------------------------HPQCLNSQPH-ARG--SSRAIFSVGPVSPSRRWWY  172 (198)
T ss_dssp             -----------------------------------------------CEEEC---------CCEEEEEECCCCTTSCEEE
T ss_pred             ---------------------------------------------CCcccccccc-CCC--cceeEEEecccCcccCeEE
Confidence                                                         0000000000 000  0123999999999999999


Q ss_pred             EEEEeeCCCC-----ceeEEEEEEE
Q psy15734        252 RCVAVNALGE-----TDGFIKVYVN  271 (314)
Q Consensus       252 ~C~a~n~~g~-----~~~~~~l~V~  271 (314)
                      +|.|.|..+.     .+..+.|.|.
T Consensus       173 ~C~a~n~~~~~~~s~~S~~~~l~V~  197 (198)
T 1ugn_A          173 RCYAYDSNSPYEWSLPSDLLELLVL  197 (198)
T ss_dssp             EEEEECTTSTTEECCCCCCEEEEEE
T ss_pred             EEEEEeCCCCccccCcCceEEEEec
Confidence            9999998752     2455666654

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.89  E-value=6.8e-22  Score=153.47  Aligned_cols=183  Identities=13%  Similarity=0.182  Sum_probs=116.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      +...+.+.+|+++.|.|.+.|.|.+.+.|++..+..+          ..+..  ..+ ..+.|.|.+++.+|+|.|+|.+
T Consensus         7 p~~~~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~----------~~~~~--~~~-~~~~L~I~~v~~~D~G~Y~C~a   73 (202)
T 1vca_A            7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL----------NGKVT--NEG-TTSTLTMNPVSFGNEHSYLCTA   73 (202)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC----------SSEEE--EET-TEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCcEEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc----------cceEE--EcC-CccEEEECcCCHHHCEEEEEEE
Confidence            3444556699999999999988888999998432211          01111  111 1236999999999999999999


Q ss_pred             ecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC--CceEEEcCCCceeecCCeeCCCeEEcCC
Q psy15734        107 NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE--PYVAWRREDGKAINYNGELVPPMLTIPN  182 (314)
Q Consensus       107 ~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~--p~~~W~~~~~~~~~~~~~~~~p~~~~~~  182 (314)
                      .+. +..+..+.|.|..+|....... . ..+.+|+.++|.|.+.+. |.  +.+.|++ ++..+.              
T Consensus        74 ~n~~~~~~~~~~l~V~~~p~~~~~~~-~-~~~~~G~~~~L~C~~~~~~p~~~~~i~W~k-~~~~l~--------------  136 (202)
T 1vca_A           74 TCESRKLEKGIQVEIYSFPKDPEIHL-S-GPLEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMK--------------  136 (202)
T ss_dssp             EETTEEEEEEEEEEEEBCCSCCEEEE-S-SCEETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEE--------------
T ss_pred             EECCceEeeEEEEEEEeCCCCCEeCC-c-eEEcCCCCEEEEEEECCcCCCCCeEEEEEe-CCeECc--------------
Confidence            775 3345566788887765433221 1 346677888888887764 32  2567777 332221              


Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                                                          .............+...+.|.|.....+|.|.|+|+|.|..+..
T Consensus       137 ------------------------------------~~~~~~~~~~~~~~~~~~~l~i~~~~~d~~g~ytC~A~n~~~~~  180 (202)
T 1vca_A          137 ------------------------------------SQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLVCRAKLHIDEM  180 (202)
T ss_dssp             ------------------------------------EEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEEEEEEECSCCC
T ss_pred             ------------------------------------ccccccccCcCcceEEEEEEEEEeeeccCCCeEEEEEEccccCC
Confidence                                                00000000000012234578898888889999999999988763


Q ss_pred             -------eeEEEEEEEecCC
Q psy15734        263 -------DGFIKVYVNLVDG  275 (314)
Q Consensus       263 -------~~~~~l~V~~~~~  275 (314)
                             +.++.|.|.++|.
T Consensus       181 ~~~~~~~~~~~~L~V~y~P~  200 (202)
T 1vca_A          181 DSVPTVRQAVKELQVYISPK  200 (202)
T ss_dssp             TTSCSEEEEEEECCEECCC-
T ss_pred             CCcceeEeeEEEEEEecCCC
Confidence                   4578888887764

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.89  E-value=2.2e-22  Score=155.98  Aligned_cols=175  Identities=24%  Similarity=0.332  Sum_probs=109.4

Q ss_pred             cCCcceEEEcCCcEEEEEE-ecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         26 EPVANVTATVGKEALMACV-VENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~-~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      .++..+.+.+|+++.|.|. +.+.+. +.+.|++++.....       ..+.+......   .+.|.|.+++.+|+|.|+
T Consensus        13 ~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~-------~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~   82 (201)
T 3s97_C           13 EERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFI-------TMDKRRFVSQT---NGNLYIANVEASDKGNYS   82 (201)
T ss_dssp             SCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBC-------CCSSSEEECTT---TCCEEESSCCGGGCEEEE
T ss_pred             CCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeee-------eeCCCeEEEcC---CCeEEECcCCcccCeEEE
Confidence            4567899999999999999 777777 89999996543211       11222222211   136999999999999999


Q ss_pred             EEEecCCCc-ce---eEEEEEEe-------CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe
Q psy15734        104 CQINTVPMT-SQ---KGYLQVVV-------PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE  172 (314)
Q Consensus       104 C~~~~~~~~-~~---~~~l~v~~-------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~  172 (314)
                      |.+.+.... ..   ...+.+..       +|.+....  ....                                    
T Consensus        83 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~--~~~~------------------------------------  124 (201)
T 3s97_C           83 CFVSSPSITKSVFSKFIPLIPIPERTTKPYPADIVVQF--KDVY------------------------------------  124 (201)
T ss_dssp             EEEEEGGGTEEEECCCEEEEEECCSSCCCEEEEEEEEC--CCEE------------------------------------
T ss_pred             EEEEecCCCcchhhcccceeeccccccCCCCCceEecC--CceE------------------------------------
Confidence            999763211 11   12222221       11111111  1233                                    


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                                    +..|+.+.|.|.+.|.|.|.+.|++++. .+...  ... ...+.     .|.|.++..+|+|.|+
T Consensus       125 --------------~~~g~~~~l~C~~~g~p~p~v~W~~~~~-~~~~~--~~~-~~~~~-----~L~i~~v~~~d~G~Y~  181 (201)
T 3s97_C          125 --------------ALMGQNVTLECFALGNPVPDIRWRKVLE-PMPST--AEI-STSGA-----VLKIFNIQLEDEGIYE  181 (201)
T ss_dssp             --------------EETTCCEEEEEEEEEESCCEEEEEETTB-CCCTT--CEE-ETTTT-----EEEECSCCGGGCEEEE
T ss_pred             --------------EecCCcEEEEEEccCCCCCceEEEeCCC-cCCCc--eee-cCCCC-----EEEEccCChhhCEEEE
Confidence                          3445555555555555555555555433 12111  111 11233     8999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEE
Q psy15734        253 CVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~  271 (314)
                      |.|.|..|....++.|.|+
T Consensus       182 C~a~n~~g~~~~~~~l~V~  200 (201)
T 3s97_C          182 CEAENIRGKDKHQARIYVQ  200 (201)
T ss_dssp             EEEEETTEEEEEEEEEEEE
T ss_pred             EEEEecCCceeeeEEEEEe
Confidence            9999999999999988885

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.89  E-value=1.6e-22  Score=156.42  Aligned_cols=126  Identities=16%  Similarity=0.110  Sum_probs=78.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+.. .+.+|++++|.|.+.+.+. .+.|+|++.. +.....     .     .......+.|.|.+++.+|
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~-~~~~~~-----~-----~~~~~~~~~L~i~~v~~~D   69 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSP-EPWDTQ-----N-----PLEPKNKARFSIPSMTEHH   69 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCS-SCSEEE-----C-----CCSSTTEEEEEESSCCGGG
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCC-CCcccc-----c-----ccCCccccEEEeccCChhH
Confidence            356788777764 7999999999999987665 9999996532 211000     0     0011223479999999999


Q ss_pred             CeEEEEEEecCC---CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEc
Q psy15734         99 RGWYMCQINTVP---MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR  161 (314)
Q Consensus        99 ~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~  161 (314)
                      +|.|+|.+.+..   ..+..+.|.|..   +|.+...   ....+.+|+.++|.|.+.+.| +.+.|++
T Consensus        70 ~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~---~~~~v~~G~~v~L~C~~~~~p-~~~~W~k  134 (196)
T 2d3v_A           70 AGRYRCYYYSPAGWSEPSDPLELVVTGFYNKPTLSAL---PSPVVTSGENVTLQCGSRLRF-DRFILTE  134 (196)
T ss_dssp             CEEEEEEEEETTEECBCCCCEEEEEECSSCCCEEEC--------------CEEEEEESSCC-SEEEEEE
T ss_pred             CeEEEEEEeCCCCcCCcCccEEEEecCCCCCCeEEcc---CCccccCCCcEEEEEEcCCCC-CEEEEEc
Confidence            999999997652   223456677765   2333322   123566777777777777766 6777777

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.89  E-value=5.7e-22  Score=155.35  Aligned_cols=192  Identities=20%  Similarity=0.289  Sum_probs=116.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCce---EEEEEEcCceeEEEeeeee---------eecCcCEEEEeCC--ceeEEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENLREY---KVAWVKMITQTILSIHHKV---------VTQNKRVSITFND--HRSWFLHL   91 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~---------~~~~~~~~~~~~~--~~~~~L~i   91 (314)
                      ..++.+++.+|++++|.|.+.+.+.+   .|.|+|++...........         .....|+.+....  ...++|.|
T Consensus         4 ~~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I   83 (218)
T 4frw_A            4 ETSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLL   83 (218)
T ss_dssp             ECCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEE
T ss_pred             eCCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEE
Confidence            45678999999999999999876543   5899996532211100000         0112344333221  22457999


Q ss_pred             eeecCCCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734         92 RDVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY  169 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~  169 (314)
                      .+++.+|+|.|.|.+.+....  .....+.+..++...... .....+..|+.+.+.|.+.+.|.|.+.|++ ++.    
T Consensus        84 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~c~~~g~p~p~i~W~~-~~~----  157 (218)
T 4frw_A           84 RNAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNP-GPALEEGQGLTLAASCTAEGSPAPSVTWDT-EVK----  157 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEE-CSCEETTCCSEEEEEEEEEEBSCCEEEEEE-SSC----
T ss_pred             eeccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeee-eeeeeeeeccccceeeeccCCcCceEEEEE-CCc----
Confidence            999999999999998653222  222233333333322221 233445566667777777666667777766 222    


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                                                                   ... .....   ...+.+...+.|.|.++..+|+|
T Consensus       158 ---------------------------------------------~~~-~~~~~---~~~~~~~~~s~L~i~~~~~~d~g  188 (218)
T 4frw_A          158 ---------------------------------------------GTT-SSRSF---KHSRSAAVTSEFHLVPSRSMNGQ  188 (218)
T ss_dssp             ---------------------------------------------CEE-EEEEE---ECSSSEEEEEEEEECCCGGGTTC
T ss_pred             ---------------------------------------------ccc-cCceE---ecCCcEEEEEEEEEeeCCHHhCe
Confidence                                                         111 11100   01122334568999999999999


Q ss_pred             EEEEEEeeCCCCceeEEEEEEEe
Q psy15734        250 SYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      .|+|.|.|..|.....+.+.|.+
T Consensus       189 ~YtC~a~N~~g~~~~~~t~~v~V  211 (218)
T 4frw_A          189 PLTCVVSHPGLLQDQRITHILHV  211 (218)
T ss_dssp             EEEEEEECTTCSSCEEEEEECCE
T ss_pred             EEEEEEEeCCCCeEEEEEEEEEE
Confidence            99999999999988777776644

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.89  E-value=4e-22  Score=154.14  Aligned_cols=180  Identities=13%  Similarity=0.136  Sum_probs=111.1

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++...... .          ...........|.|.+++.+|+
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-~----------~~~~~~~~~~~L~i~~v~~~D~   70 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWD-R----------QNPLEPKNKARFSIPSMTEDYA   70 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSE-E----------ECCCSSSSEEEEEESSCCGGGC
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCccc-c----------cccccCCceEEEEeccCCcccC
Confidence            46777777777 8999999999999988 66799999965432110 0          0000111234799999999999


Q ss_pred             eEEEEEEecCCC---cceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee
Q psy15734        100 GWYMCQINTVPM---TSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL  173 (314)
Q Consensus       100 G~Y~C~~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~  173 (314)
                      |.|+|.+.+...   .+..+.|.|..   +|.+...+   ...+.+|+.++|.|.+.+. .+.+.|++ ++         
T Consensus        71 G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~---~~~v~~G~~v~L~C~~~~~-~~~~~w~k-~g---------  136 (196)
T 3p2t_A           71 GRYRCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALP---SPLVTSGKSVTLLCQSRSP-MDTFLLCK-ER---------  136 (196)
T ss_dssp             EEEEEEEEETTEEBCCCCCEEEEEECSSCCCEEEEES---CSEECTTCCEEEEEEEEEE-EEEEEEEE-TT---------
T ss_pred             ceEEEEEeCCCcccCCCccEEEEecCCCCCCEEEeCC---cceecCCCeEEEEEecCCC-CCEEEEEe-CC---------
Confidence            999999977532   24455666654   23333222   1245566666677766552 34566665 22         


Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                                                              ..............    ......|.|.+++.+|+|.|+|
T Consensus       137 ----------------------------------------~~~~~~~~~~~~~~----~~~~~~L~i~~v~~~d~G~Y~C  172 (196)
T 3p2t_A          137 ----------------------------------------AAHPLLCLRSEHGA----QQHQAEFPMSPVTSVHGGTYRC  172 (196)
T ss_dssp             ----------------------------------------CCCGGGSEEEEEEE----EEEEEEEEECSCCGGGCEEEEE
T ss_pred             ----------------------------------------Ccccceeecccccc----cCcceEEEeCCCcccCCCeEEE
Confidence                                                    21111110000000    0112489999999999999999


Q ss_pred             EEeeCCC-----CceeEEEEEE
Q psy15734        254 VAVNALG-----ETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g-----~~~~~~~l~V  270 (314)
                      .|.|..+     ..+..+.|.|
T Consensus       173 ~a~n~~~~~~~s~~S~~~~l~V  194 (196)
T 3p2t_A          173 FSSHGFSHYLLSHPSDPLELIV  194 (196)
T ss_dssp             EEECGGGTTEECCCCCCEEEEE
T ss_pred             EEEcCCCCcccCCCCCCEEEEe
Confidence            9999875     3344555555

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=99.89  E-value=1e-22  Score=172.63  Aligned_cols=197  Identities=14%  Similarity=0.120  Sum_probs=136.8

Q ss_pred             eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      ..+.+|+++.|.|.+.+.|.+.+.|+++++.. .               .    ..+.|.|.+++.+|+|.|+|.+.+..
T Consensus       106 ~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~-~---------------~----~~~~L~i~~v~~~d~G~Y~C~a~~~~  165 (363)
T 1wio_A          106 THLLQGQSLTLTLESPPGSSPSVQCRSPRGKN-I---------------Q----GGKTLSVSQLELQDSGTWTCTVLQNQ  165 (363)
T ss_dssp             SSEESBSCEEEEEECCTTCCCCEEEECSSSCE-E---------------E----ESSEEEECSBCGGGCEECEEEEEETT
T ss_pred             eEEecCCCEEEEEEcCCCCCCeEEEEcCCCcc-c---------------c----cceEEEEeeCChhcCCEEEEEEecCC
Confidence            35789999999999988888999999965331 0               0    11279999999999999999997643


Q ss_pred             -CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-----cCCCceEEEcCCCceeec--------CCeeC--
Q psy15734        111 -MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-----YPEPYVAWRREDGKAINY--------NGELV--  174 (314)
Q Consensus       111 -~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-----~p~p~~~W~~~~~~~~~~--------~~~~~--  174 (314)
                       .....+.|.|..+|...     ....+.+|+.+.|.|.+.+     +|.|.+.|++ ++..+..        +....  
T Consensus       166 ~~~~~~~~l~v~~~p~~~-----~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i~W~~-~g~~~~~~~~~~~~~~~~~~~~  239 (363)
T 1wio_A          166 KKVEFKIDIVVLAFQKAS-----SIVYKKEGEQVEFSFPLAFTVEKLTGSGELWWQA-ERASSSKSWITFDLKNKEVSVK  239 (363)
T ss_dssp             EEEEECCEECEECCSCSE-----EEEEEETBCCEEEECCCCCCCCSSCEEEEEEEEE-SSCCCCCCEEEEEECSSCEEEE
T ss_pred             CeEEEEEEEEEecCCCCC-----CceEEecCCEEEEEEEEecccccCCCceeEEEec-CCCCccceEEEEEecCCeeecc
Confidence             22334456666555432     4556889999999998877     7889999998 5554432        11100  


Q ss_pred             --------------CCeEEcCC---------------C----c--------ceeecCccEEEEEEEeecCCce--eEEec
Q psy15734        175 --------------PPMLTIPN---------------Q----L--------EGAFVSQTVELHCHTEAFPASL--NYWTN  211 (314)
Q Consensus       175 --------------~p~~~~~~---------------~----~--------~~v~~g~~~~l~C~~~g~p~p~--~~W~~  211 (314)
                                    ...+.+..               .    .        +....|+.+.|.|.+.|.|+|.  +.|++
T Consensus       240 ~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~a~n~~~~g~~~~~~~l~V~~v~g~~~~l~C~~~g~p~p~~~i~W~~  319 (363)
T 1wio_A          240 RVTQDPKLQMGKKLPLHLTLPQALPQYAGSGNLTLALEAKTGKLHQEVNLVVMRATQLQKNLTCEVWGPTSPKLMLSLKL  319 (363)
T ss_dssp             EEECSSCCBCCSSSSCEEEESSBCGGGCEEEEEEECBTTTTCCEEEEEEEEEEEECCCSSSEEEEEESSCCTTCCEEEEC
T ss_pred             ccccchhhhcccCCceEEEEccCCcCcCcEEEEEEEEhhhcCeEEEEEeEEEEEecCCCeeEEEEEccccCCCccEEEEe
Confidence                          00111100               0    0        0112378999999999999998  99999


Q ss_pred             CCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        212 EKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      ++.....                ...|.|.++..+|+|.|+|.|.|. |....+..|.|
T Consensus       320 ~~~~~~~----------------~~~l~i~~v~~~d~G~Y~C~a~~~-~~~~~~~~~~V  361 (363)
T 1wio_A          320 ENKEAKV----------------SKREKAVWVLNPEAGMWQCLLSDS-GQVLLESNIKV  361 (363)
T ss_dssp             SSSSCSE----------------EESSSEEEESSCCSEEEEEEECSS-SSCCEEEEEEE
T ss_pred             CCCceee----------------eeeeeeeeeccccceeEEEEEecC-CeEEEecceEe
Confidence            7543221                126788999999999999999965 45555655554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.89  E-value=1.2e-22  Score=160.12  Aligned_cols=194  Identities=21%  Similarity=0.277  Sum_probs=115.8

Q ss_pred             cceEEEcCCcEEEEEEecCCCc-----eEEEEEEcCceeEEEeeee----eeecCcCEEEEeCC--ceeEEEEEeeecCC
Q psy15734         29 ANVTATVGKEALMACVVENLRE-----YKVAWVKMITQTILSIHHK----VVTQNKRVSITFND--HRSWFLHLRDVQET   97 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~-----~~v~W~~~~~~~~~~~~~~----~~~~~~~~~~~~~~--~~~~~L~i~~~~~~   97 (314)
                      +.+.+.+|+++.|.|.+.+.+.     +.+.|++++..........    ......|+.+..+.  ...++|.|.+++.+
T Consensus         3 ~~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~v~~~   82 (222)
T 4i0k_A            3 DPVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTALFPDLLVQGNASLRLQRVRVT   82 (222)
T ss_dssp             CCCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEECCTTTGGGTBCCEEECSCCGG
T ss_pred             CCEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEEecccccCCeEEEEECCcccc
Confidence            3567889999999999977543     8999999764432211110    01123444443221  11347999999999


Q ss_pred             CCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEcCCCceeecCCeeCCC
Q psy15734         98 DRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRREDGKAINYNGELVPP  176 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~~~~~~~~~~~~~~~p  176 (314)
                      |+|.|+|.+.+.+..+..+.|.|..++............+..|+.+.|.|.+ .+.|.|.+.|++.+             
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~~~~-------------  149 (222)
T 4i0k_A           83 DEGSYTCFVSIQDFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWKDGQ-------------  149 (222)
T ss_dssp             GCSCEEEEEEECCCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEECTT-------------
T ss_pred             cCEEEEEEEEeCCCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEEcCC-------------
Confidence            9999999997655555555566655422111111122345556666666666 45566666666532             


Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                                                           +..+............++  ..+.|.|.++..+|+|.|+|.|.
T Consensus       150 -------------------------------------~~~~~~~~~~~~~~~~~~--~~~~l~i~~v~~~d~G~Y~C~a~  190 (222)
T 4i0k_A          150 -------------------------------------GVPLTGNVTTSQMANERG--LFDVHSVLRVVLGANGTYSCLVR  190 (222)
T ss_dssp             -------------------------------------SCBCCSEEEEEEEECTTS--CEEEEEEEEEECCTTCEEEEEEE
T ss_pred             -------------------------------------CccCCCCcceeEEcCCCC--eEEEEEEEEEEeCCCCEEEEEEE
Confidence                                                 221111111111111111  12368899999999999999999


Q ss_pred             eCCCCceeEEEEEEEecC
Q psy15734        257 NALGETDGFIKVYVNLVD  274 (314)
Q Consensus       257 n~~g~~~~~~~l~V~~~~  274 (314)
                      |..|.....+.|.|..+|
T Consensus       191 n~~g~~~~~~~l~V~~~p  208 (222)
T 4i0k_A          191 NPVLQQDAHGSVTITGQP  208 (222)
T ss_dssp             ETTTTEEEEEEEECCC--
T ss_pred             CCCCCCceEEEEEEeCCc
Confidence            999999999998887654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.89  E-value=4.4e-22  Score=156.43  Aligned_cols=191  Identities=16%  Similarity=0.254  Sum_probs=114.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcC---ceeEEEeeee----e--eecCcCEEEEeCCceeEEEEE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMI---TQTILSIHHK----V--VTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~---~~~~~~~~~~----~--~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      |.+..++ .+.+.+|++++|.|.+.+. +.+.+.|+|..   ..........    .  .....|+.+.. ....++|.|
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I   79 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-SGADRYLSI   79 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-ETTEEEEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-CCceEEEEE
Confidence            5566677 8999999999999999887 88999999943   1111111000    0  11124666654 233458999


Q ss_pred             eeecCCCCeEEEEEEecCCC------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEE
Q psy15734         92 RDVQETDRGWYMCQINTVPM------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAW  159 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W  159 (314)
                      .+++.+|+|.|+|.+.+...      ......|.|..    +|.+....  .......|+.+.|.|.+.+ .|.+ .+.|
T Consensus        80 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~--~~~~~~~~~~v~L~C~~~g~~p~~~~v~W  157 (218)
T 3s96_B           80 SNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFP--PSSEELKENKATLVCLISNFSPSGVTVAW  157 (218)
T ss_dssp             SSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEEC--CCHHHHHTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             ccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeC--CCcccccCCcEEEEEEECcccCCCeEEEE
Confidence            99999999999999965431      22334666663    34333322  1112334566666666665 3444 5666


Q ss_pred             EcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEE
Q psy15734        160 RREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~  239 (314)
                      ++ ++..+.                                                 ............+.+...+.|.
T Consensus       158 ~k-~g~~l~-------------------------------------------------~~~~~~~~~~~~~~~~~~s~l~  187 (218)
T 3s96_B          158 KA-NGTPIT-------------------------------------------------QGVDTSNPTKEGNKFMASSFLH  187 (218)
T ss_dssp             EE-TTEEC---------------------------------------------------------------CEEEEEEEE
T ss_pred             EE-CCEECc-------------------------------------------------CceecCcccccCCcEEEEEEEE
Confidence            66 333221                                                 1000000111122244455799


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        240 IRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      |.....+|+|.|+|.|.|..+....++
T Consensus       188 i~~~~~~d~g~Y~C~a~n~~~~~~~~~  214 (218)
T 3s96_B          188 LTSDQWRSHNSFTCQVTHEGDTVEKSL  214 (218)
T ss_dssp             EEHHHHHTCSCEEEEEEETTEEEEEEE
T ss_pred             EeHHHccCCCeEEEEEEeCCCcccccc
Confidence            999999999999999999987555443

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.89  E-value=2.2e-22  Score=156.93  Aligned_cols=185  Identities=19%  Similarity=0.182  Sum_probs=113.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeee--ee----eecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHH--KV----VTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~--~~----~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+....+.+|+++.|.|...+.+.+.+.|++++.    ..+.....  ..    ....+|+.+..+    ++|.|.+++.
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~----~~L~i~~v~~   80 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN----GSLLFQMITM   80 (208)
T ss_dssp             EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTT----SCEEECSCCG
T ss_pred             cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecC----CeEEEccccc
Confidence            4445789999999999998777888999998542    11111100  00    011234444322    2699999999


Q ss_pred             CCCeEEEEEEecCC--CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeC
Q psy15734         97 TDRGWYMCQINTVP--MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELV  174 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~--~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~  174 (314)
                      +|+|.|+|.+.+..  .....+.|.|..++........... +..|+.+.|.|.+.+.| |.+.|++ ++.         
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~g~~v~l~C~~~~~p-p~i~W~~-~g~---------  148 (208)
T 3r4d_A           81 KDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT-VKELDSVTLTCLSNDIG-ANIQWLF-NSQ---------  148 (208)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS-CCTTCCEEEEEECSCTT-CEEEEEE-TTE---------
T ss_pred             cCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCce-EeeCCCEEEEEECCCCC-CceEEEE-CCE---------
Confidence            99999999997652  3344455666654321111101111 56677777777766644 5666666 332         


Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                                                               .+....++.+. ..+.     +|.|.++..+|+|.|+|.
T Consensus       149 -----------------------------------------~l~~~~~~~~~-~~~~-----~L~i~~v~~~d~G~Y~C~  181 (208)
T 3r4d_A          149 -----------------------------------------SLQLTERMTLS-QNNS-----ILRIDPIKREDAGEYQCE  181 (208)
T ss_dssp             -----------------------------------------ECCCCSSEEEE-TTTT-----EEEESSCCGGGCEEEEEE
T ss_pred             -----------------------------------------eCCCCCCeEEc-CCCC-----EEEEeccCHHhCeEEEEE
Confidence                                                     22222222221 1123     899999999999999999


Q ss_pred             EeeCCCCc-eeEEEEEEEecC
Q psy15734        255 AVNALGET-DGFIKVYVNLVD  274 (314)
Q Consensus       255 a~n~~g~~-~~~~~l~V~~~~  274 (314)
                      |.|..|.. +..+.|.|..++
T Consensus       182 a~N~~g~~~s~~~~l~v~~~~  202 (208)
T 3r4d_A          182 ISNPVSVRRSNSIKLDIIFDP  202 (208)
T ss_dssp             EECTTCCEECCCEEECCC---
T ss_pred             EecCCCcccCCceeeeEEeCC
Confidence            99999976 446666665543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.88  E-value=2.7e-22  Score=167.33  Aligned_cols=214  Identities=17%  Similarity=0.217  Sum_probs=129.4

Q ss_pred             CcEEEEEEecCC-C-ceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCc
Q psy15734         37 KEALMACVVENL-R-EYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT  112 (314)
Q Consensus        37 ~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  112 (314)
                      +++.|.|.+.+. | .+.+.|++++ ..+.....  .....++.+.+.      ..|.|.+.+.+|+|.|+|.+.+....
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k~g-~~l~~~~~~~~~~~~~g~~~~~------s~l~i~~~~~~d~g~Y~C~a~n~~~~   97 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLEDG-QVMDVDLSTASTTQEGELASTQ------SELTLSQKHWLSDRTYTCQVTYQGHT   97 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEETT-EECCGGGEEEEEEEETTEEEEE------EEEEEEHHHHHTTCCEEEEEEETTEE
T ss_pred             CcEEEEEEEeCeECCCeEEEEEECC-EEcccceecCCcCccCCcEEEE------EEEEEcHHHcCCCCcEEEEEEeCCCC
Confidence            699999999874 3 4799999954 43321100  001112222221      26888888888999999999875322


Q ss_pred             ceeEEEEE-----EeCCceeeecCcceeEEecCceEEEEEEeccc-CCC---ceEEEcCCCceeec---------CCe--
Q psy15734        113 SQKGYLQV-----VVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP---YVAWRREDGKAINY---------NGE--  172 (314)
Q Consensus       113 ~~~~~l~v-----~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p---~~~W~~~~~~~~~~---------~~~--  172 (314)
                       ....+.+     ...|.+...+ +....+.+|+.+.|.|.+.+. |.+   .+.|++.++..+..         ++.  
T Consensus        98 -~~~~~~~~~~~~~~~p~v~~~~-p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~  175 (323)
T 2wqr_A           98 -FEDSTKKCADSNPRGVSAYLSR-PSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLT  175 (323)
T ss_dssp             -EEEEECCCCCSSGGGCEEEECC-CCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEE
T ss_pred             -cceeeecCCCCCCCCCEEEEcC-CCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEE
Confidence             1112211     0123332222 233346789999999999886 566   89999954443321         111  


Q ss_pred             ----eC-------------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCC-c-eeEE
Q psy15734        173 ----LV-------------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA-S-LNYW  209 (314)
Q Consensus       173 ----~~-------------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p-~~~W  209 (314)
                          +.                                     +|.+.+.+.......|+.+.|.|.+.|.++ + .+.|
T Consensus       176 ~~~~L~I~~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W  255 (323)
T 2wqr_A          176 VTSTLPVGTRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQW  255 (323)
T ss_dssp             EEEEEECCHHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEE
T ss_pred             EEEEEEECHHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEE
Confidence                10                                     222222111111123999999999999544 3 7999


Q ss_pred             ecCCCeeeecCCceee---eEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        210 TNEKGDMIITGDDYED---SRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       210 ~~~~~~~~~~~~~~~~---~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ++++ ..+... .+..   ... ++.|...+.|.|.++..+|+|.|+|.|.|..+.
T Consensus       256 ~k~g-~~l~~~-~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g~Y~C~a~n~~~~  309 (323)
T 2wqr_A          256 LHNE-VQLPDA-RHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAAS  309 (323)
T ss_dssp             EETT-EECCGG-GEEECCCEECSSSSEEEEEEEEEEHHHHHHCCCEEEEEECTTST
T ss_pred             EECC-EECCCC-ceeecCcccCCCCcEEEEEEEEEChHHccCCCEEEEEEEeCCCC
Confidence            9974 433222 1211   111 223667789999999999999999999998876

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.88  E-value=7.9e-21  Score=151.39  Aligned_cols=195  Identities=13%  Similarity=0.137  Sum_probs=121.5

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeE---EEeeee----eeecCcCEEEEeCCceeEEEEEeee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTI---LSIHHK----VVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~---~~~~~~----~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+..++..+.+.+|++++|.|. .+.+.+.+.|+|.+ +..+   ......    ......|+.+.......++|.|.++
T Consensus         2 ~v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I~~v   80 (238)
T 2p1y_A            2 AVTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQENFSLILELA   80 (238)
T ss_dssp             CEEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEECCSSSBCEEEESSC
T ss_pred             cceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEccCCceEEEEEecC
Confidence            3456678899999999999999 67778899999952 1111   110000    0111346666543334558999999


Q ss_pred             cCCCCeEEEEEEecCCC------cceeEEEEEEeCCc------------eeeecCcceeEEecCceEEEEEEecccCCCc
Q psy15734         95 QETDRGWYMCQINTVPM------TSQKGYLQVVVPPR------------ILLDRTSTDVVVREGTEVTLECSAVGYPEPY  156 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~p~------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~  156 (314)
                      +.+|+|.|+|.+.+...      ......|.|...+.            +...  +....+.+|+.++|.|.+.+.|.+.
T Consensus        81 ~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~p~~~  158 (238)
T 2p1y_A           81 TPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQS--PQSLTVWEGETAILNCSYENSAFDY  158 (238)
T ss_dssp             CGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEE--CSEEEEETTSCEEEEEECCCTTCCE
T ss_pred             CcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEcc--CceEEEeCCCeEEEEEEEecCCCCc
Confidence            99999999999976421      11234677766542            2222  3566788999999999999888899


Q ss_pred             eEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEE
Q psy15734        157 VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM  236 (314)
Q Consensus       157 ~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (314)
                      +.|++.+...                                    ....+.+...+. ......++.+......  ...
T Consensus       159 i~W~k~~~~~------------------------------------~~~~~~~~~~~~-~~~~~~r~~~~~~~~~--~~~  199 (238)
T 2p1y_A          159 FPWYQQFPGE------------------------------------GPALLISILSVS-DKKEDGRFTIFFNKRE--KKL  199 (238)
T ss_dssp             EEEEEECTTS------------------------------------CCEEEEEEETTC-SEEEETTEEEEEETTT--TEE
T ss_pred             EEEEEECCCC------------------------------------CCEEEEEEccCC-CcccCCceEEEecCCC--CeE
Confidence            9999842110                                    000111111111 1111223332211111  134


Q ss_pred             EEEEeecCCCCCeEEEEEEeeCC
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +|.|.+++.+|+|.|+|.|.|..
T Consensus       200 ~L~I~~v~~~D~G~Y~C~a~n~~  222 (238)
T 2p1y_A          200 SLHIADSQPGDSATYFCAAIDTN  222 (238)
T ss_dssp             EEEETTCCGGGCEEEEEEEEETT
T ss_pred             EEEEcCCCHHHCEEEEEEEeeCC
Confidence            89999999999999999999974

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=99.88  E-value=3.1e-22  Score=174.94  Aligned_cols=232  Identities=15%  Similarity=0.195  Sum_probs=138.8

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENL-RE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +|.+...+....+.+|+.+.|.|.+.+. |. +.+.|++++..............++++...      ..|.|.+++.+|
T Consensus       132 ~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------s~L~i~~~~~~d  205 (457)
T 1hzh_H          132 GPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFPAVLQSSGLYSLS------SVVTVPSSSLGT  205 (457)
T ss_dssp             CCEEEEECCCSCCCTTCCEEEEEEEESBBSCCCEEEETTTTBCTTEEEEEEEECTTSCEEEE------EEEEECSGGGGT
T ss_pred             CCeEEecCccccccCCCcEEEEEEEeEEeCCCeEEEEEeCCEeccceEcCceECCCCCEEEE------EEEEecccccCC
Confidence            5555443333446899999999999875 53 799999855321111111112233343332      279999999999


Q ss_pred             CeEEEEEEecCCCc-ceeEEEEEE-----------------eCCceeeecCcceeEEecCceEEEEEEecccCCC----c
Q psy15734         99 RGWYMCQINTVPMT-SQKGYLQVV-----------------VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP----Y  156 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~-~~~~~l~v~-----------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p----~  156 (314)
                       |.|+|.+.+.... .....+.+.                 .+|.+...+......+.+|+.+.|.|.+.|.|++    .
T Consensus       206 -G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~~G~~v~L~C~~~g~~p~p~~~~  284 (457)
T 1hzh_H          206 -QTYICNVNHKPSNTKVDKKAEPKSCDKTHTCPPCPAPELLGGPSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVK  284 (457)
T ss_dssp             -SCCEEEEEEGGGTEEEEEECCCCCSCSSCSCCSCCCCCCSSSCEEEEECCCHHHHHCTTSCCCEEEEEECCCTTCCCCE
T ss_pred             -ceEEEEEEeCCCCcceeEEecccCCCcccccCCCCCccccCCceEEeECcCchhhcccCCceEEEEEEEcccCCCCceE
Confidence             9999999775322 222222221                 1344322221111125679999999999987543    8


Q ss_pred             eEEEcCCCceeec----------CCe-------------------eC------------------------CCeEEcCC-
Q psy15734        157 VAWRREDGKAINY----------NGE-------------------LV------------------------PPMLTIPN-  182 (314)
Q Consensus       157 ~~W~~~~~~~~~~----------~~~-------------------~~------------------------~p~~~~~~-  182 (314)
                      +.|++ ++..+..          ++.                   +.                        +|.+.+.+ 
T Consensus       285 i~W~k-~~~~~~~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~  363 (457)
T 1hzh_H          285 FNWYV-DGVEVHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPP  363 (457)
T ss_dssp             EEEEE-TTEEECCCEEEEEEECTTSCEEEEEEECCCHHHHHHTCCEEEEEECTTSSSCEEEEECCCCCCCBCCEEEEECC
T ss_pred             EEEEe-CCccccccccccceecCCCcEEEEEEEEECHHHccCCCcEEEEEeCCCCCCcceEEEEcccCCCCCCeEEEECC
Confidence            99999 5543311          110                   00                        33333322 


Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ....+..|+ +.|.|.+.|.|++  .+.|++++ ..+............++ |...+.|.|.....+|+|.|+|.|.|..
T Consensus       364 ~~~~~~~~~-~~l~C~~~g~~p~~~~v~W~k~g-~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~  441 (457)
T 1hzh_H          364 SRDELTKNQ-VSLTCLVKGFYPSDIAVEWESNG-QPENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEA  441 (457)
T ss_dssp             CGGGGGSSE-EEEEEEEEEEBSSCCEEEEEETT-EECCCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CccccCCCc-EEEEEEEEeEECCCCEEEEEECC-EECcceeecCceeCCCCCEEEEEEEEEChHHccCCCeEEEEEEECC
Confidence            222344555 9999999997654  89999974 43322222222222333 6666788898888889999999999986


Q ss_pred             CCc
Q psy15734        260 GET  262 (314)
Q Consensus       260 g~~  262 (314)
                      ...
T Consensus       442 l~~  444 (457)
T 1hzh_H          442 LHN  444 (457)
T ss_dssp             SGG
T ss_pred             CCC
Confidence            543

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.88  E-value=6.5e-22  Score=155.35  Aligned_cols=191  Identities=14%  Similarity=0.167  Sum_probs=113.0

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeE--EEEEeee
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW--FLHLRDV   94 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~L~i~~~   94 (314)
                      ....+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++.. +...       . + .. .......  .|.|.++
T Consensus         5 ~~~~~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~-~~~~-------~-~-~~-~~~~~~~~~~L~I~~v   71 (218)
T 1uct_A            5 GDFPMPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNS-TYRE-------I-G-RR-LKFWNETDPEFVIDHM   71 (218)
T ss_dssp             GGSCCCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETT-EEEE-------C-S-EE-CC----CCCEEEECSC
T ss_pred             CCCCCCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCc-cccc-------c-c-cc-CCCCcceeeEEEEccc
Confidence            3456788887776 57999999999999977 5779999996543 2110       0 0 00 0001122  6999999


Q ss_pred             cCCCCeEEEEEEecCCC---cceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceee
Q psy15734         95 QETDRGWYMCQINTVPM---TSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~---~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~  168 (314)
                      +.+|+|.|+|.+.+...   .+..+.|.|..   +|.+...+   ...+.+|+.++|.|.+.+.|.+.+.|++ ++..  
T Consensus        72 ~~~D~G~Y~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p---~~~v~~G~~v~L~C~~~~~~~~~~~W~k-~g~~--  145 (218)
T 1uct_A           72 DANKAGRYQCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADR---GLVLMPGENISLTCSSAHIPFDRFSLAK-EGEL--  145 (218)
T ss_dssp             CGGGCEEEEEEEEETTTEEEECCCEEEEEECSSCCCEEEESS---CSEECTTCCCEEEEECSSSCCSEEEEEE-TTCS--
T ss_pred             ccccCEEEEEEEEcCCCceeecCCEEEEEcCcccCCEEEeCC---CCccCCCCCEEEEEeCCCCCCCEEEEEE-CCCc--
Confidence            99999999999977422   23345566654   23332221   2355677777777755555556666666 3221  


Q ss_pred             cCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        169 YNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                                                     .. . . . .....+     ..|.|.+++.+|+
T Consensus       146 -----------------------------------------------~~-~-~-~-~~~~~~-----~~L~I~~v~~~D~  169 (218)
T 1uct_A          146 -----------------------------------------------SL-P-Q-H-QSGEHP-----ANFSLGPVDLNVS  169 (218)
T ss_dssp             -----------------------------------------------SC-C-S-E-EECSSS-----EEEECCSCCGGGC
T ss_pred             -----------------------------------------------cc-c-c-c-cCCCcc-----CEEEEccCCcccC
Confidence                                                           11 0 0 0 000111     3899999999999


Q ss_pred             eEEEEEEeeCCC-----CceeEEEEEEEecCCCeeEEEE
Q psy15734        249 GSYRCVAVNALG-----ETDGFIKVYVNLVDGDIFQIRK  282 (314)
Q Consensus       249 G~Y~C~a~n~~g-----~~~~~~~l~V~~~~~~~~~~~~  282 (314)
                      |.|+|.|.|...     ..+..+.|.|........+..+
T Consensus       170 G~Y~C~a~n~~~~~~~s~~S~~~~l~V~g~~~~~~t~~n  208 (218)
T 1uct_A          170 GIYRCYGWYNRSPYLWSFPSNALELVVTDSIHQDYTTQN  208 (218)
T ss_dssp             EEEEEEEECTTSTTEECCCCCCEEEEEC-----------
T ss_pred             EEEEEEEEcCCCCCcCCCCCCcEEEEEecCCCcCCChhh
Confidence            999999998642     3455677777765444444333

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.88  E-value=6.1e-22  Score=160.66  Aligned_cols=218  Identities=20%  Similarity=0.250  Sum_probs=126.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEec---CCCceEEEEEEcCcee----E-EEeeeee----eecCcCEEEEeC-CceeEE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQT----I-LSIHHKV----VTQNKRVSITFN-DHRSWF   88 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~---~~~~~~v~W~~~~~~~----~-~~~~~~~----~~~~~~~~~~~~-~~~~~~   88 (314)
                      +.+..++..+.+.+|+++.|.|.+.   +.+.+.+.|++.+...    + .......    .....|+.+..+ ...+++
T Consensus         6 ~~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~   85 (268)
T 3mj6_A            6 PGLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHLVGDTFHNDGS   85 (268)
T ss_dssp             ------CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEECSCTTTTBCC
T ss_pred             cccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEEeecCCCCEEE
Confidence            4566677789999999999999997   6677899999965421    1 1100000    011245554321 123357


Q ss_pred             EEEeeecCCCCeEEEEEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe---cccCCCceEEEcCCC
Q psy15734         89 LHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA---VGYPEPYVAWRREDG  164 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~---~~~p~p~~~W~~~~~  164 (314)
                      |.|.+++.+|+|.|+|.+.+.. .......+.+.+.+.     .+....+.+|+.+.|.|.+   .+.|.|.+.|++.++
T Consensus        86 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~-----~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~~~~  160 (268)
T 3mj6_A           86 LLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPE-----EPRDLRVRVGDTTQMRCSIQSTEEKRVTKVNWMFSSG  160 (268)
T ss_dssp             EEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECC-----CCSEEEEETTCCEEECCBCEESSSSCCCEEEEEEECT
T ss_pred             EEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEecc-----CCCccccccCCcEEEEEEecCCCCCCccceEEEecCC
Confidence            9999999999999999997642 222333333333221     2346678899999999999   567889999998443


Q ss_pred             ceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee--eeEeeCCeeeEEEEEEee
Q psy15734        165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE--DSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       165 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~s~L~i~~  242 (314)
                      ....                      +...+.. ..+.+.  .        ......++.  +....+.......|.|.+
T Consensus       161 ~~~~----------------------~~~~~~~-~~~~~~--~--------~~~~~~~~~~r~~~~~~~~~~~~~L~i~~  207 (268)
T 3mj6_A          161 SHTE----------------------EETVLSY-DSNMRS--G--------KFQSLGRFRNRVDLTGDISRNDGSIKLQT  207 (268)
T ss_dssp             TCSS----------------------CEEEEEE-ETTSSS--C--------EEECSSTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCc----------------------ceeEEEe-cCCCCc--c--------ccccccccccceEeeccCCCCeEEEEECc
Confidence            2210                      0000000 000000  0        000011110  000000000123899999


Q ss_pred             cCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCe
Q psy15734        243 ILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      +..+|+|.|+|.|.|..|.....+.|.|...+...
T Consensus       208 v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~p~~  242 (268)
T 3mj6_A          208 VKESDQGIYTCSIYVGKLESRKTIVLHVVQDEFQR  242 (268)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEECC----
T ss_pred             CChhhCeEEEEEEEcCCceEEEEEEEEEEcCCCee
Confidence            99999999999999999988899999886655433

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.88  E-value=1.4e-21  Score=147.48  Aligned_cols=163  Identities=15%  Similarity=0.185  Sum_probs=112.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.+...+..+.+.+|+++.|.|.+.+.+ .+.+.|++++ ..+        ..+.           ..+.|.+++.+|+
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g-~~~--------~~~~-----------~~~~~~~~~~~d~   63 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNG-NLI--------PTHT-----------QPSYRFKANNNDS   63 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETT-EEC--------TTCC-----------SSEEEEECCGGGC
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECC-eEc--------ccCc-----------cceEEEecccccC
Confidence            46666677788899999999999998875 5799999954 322        1111           1477889999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCCeeCCCeE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPML  178 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~~~~~p~~  178 (314)
                      |.|+|.+.+ ...+..+.|.|..++.+...   ....+.+|+.+.|.|.+. +.|.+.+.|++ ++              
T Consensus        64 G~Y~C~~~~-~~~s~~~~l~v~~~~~~~~~---~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~-~g--------------  124 (170)
T 3ry4_A           64 GEYTCQTGQ-TSLSDPVHLTVLFEWLVLQT---PHLEFQEGETIMLRCHSWKDKPLVKVTFFQ-NG--------------  124 (170)
T ss_dssp             EEEEEEETT-SBCCCCEEEEEECCSEEEEC---SCSEECTTCCEEEEEEEGGGCCEEEEEEEE-TT--------------
T ss_pred             eEEEEEEeC-CCceEeEEEEEECCceEecC---CCceeecCCeEEEEEECCCCCCCceEEEEE-CC--------------
Confidence            999999965 33445567777766544332   234566777777777774 33556677776 32              


Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                                                          ..+...       ..+.     .|.|.++..+|+|.|+|.|.|.
T Consensus       125 ------------------------------------~~~~~~-------~~~~-----~L~i~~v~~~d~G~Y~C~a~n~  156 (170)
T 3ry4_A          125 ------------------------------------KSQKFS-------HLDP-----TFSIPQANHSHSGDYHCTGNIG  156 (170)
T ss_dssp             ------------------------------------EEEEEE-------SSCC-----EEEESSCCGGGCEEEEEEEEET
T ss_pred             ------------------------------------eEcccc-------CCCC-----eEEEEeccccCCEEEEEEEEeC
Confidence                                                211110       0112     8999999999999999999999


Q ss_pred             CCC-ceeEEEEEE
Q psy15734        259 LGE-TDGFIKVYV  270 (314)
Q Consensus       259 ~g~-~~~~~~l~V  270 (314)
                      .|. .+..+.|.|
T Consensus       157 ~g~~~s~~~~l~V  169 (170)
T 3ry4_A          157 YTLFSSKPVTITV  169 (170)
T ss_dssp             TEEEECCCEEEEE
T ss_pred             cCccccccEEEEE
Confidence            986 455666655

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.88  E-value=1.5e-21  Score=152.89  Aligned_cols=189  Identities=16%  Similarity=0.203  Sum_probs=117.9

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc---eeEEEe--eeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSI--HHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~---~~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      |.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+.   ......  .........|+.+... ...++|.|.+++.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~   80 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSGS-GRDSSFTISSLES   80 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCG
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEecc-CCEEEEEECCCCc
Confidence            566677888999999999999999988889999998431   111111  0011112456666532 2345899999999


Q ss_pred             CCCeEEEEEEecCC--CcceeEEEEE---EeCCceeeecCcceeEEecCceEEEEEEecccCC--CceEEEcCCCceeec
Q psy15734         97 TDRGWYMCQINTVP--MTSQKGYLQV---VVPPRILLDRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRREDGKAINY  169 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~--~~~~~~~l~v---~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~~~~~~  169 (314)
                      +|+|.|+|.+.+..  .......|.|   ..+|.+...+  ....+..|+.+.|.|.+.+.++  +.+.|++ ++..+. 
T Consensus        81 ~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~k-~g~~l~-  156 (213)
T 3r06_A           81 EDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFP--PSSEQLGTGSATLVCFVNNFYPKDINVKWKV-DGSEKR-  156 (213)
T ss_dssp             GGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEEC--CCHHHHTTTEEEEEEEEEEEBSSCEEEEEEE-TTEEEC-
T ss_pred             ccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeC--CCceecCCCCcEEEEEEeeecCCceEEEEEE-CCcccC-
Confidence            99999999996542  1233345666   3345444432  1222335666777777776543  2677777 443321 


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeE-eeCCeeeEEEEEEeecCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSR-LINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~L~i~~~~~~  246 (314)
                                                                       ..  ....... ..+.|...+.|.|.....+
T Consensus       157 -------------------------------------------------~~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~  187 (213)
T 3r06_A          157 -------------------------------------------------DGVLQSVTDQDSKDSTYSLSSTLSLTKADYE  187 (213)
T ss_dssp             -------------------------------------------------TTEEEEECCCCTTTCCEEEEEEEEEEHHHHH
T ss_pred             -------------------------------------------------CceEeccCceeCCCCcEEEEEEEEeCHHHhc
Confidence                                                             10  0000001 1122445568999999999


Q ss_pred             CCeEEEEEEeeCCCCcee
Q psy15734        247 QFGSYRCVAVNALGETDG  264 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~~~~  264 (314)
                      |+|.|+|.|.|.......
T Consensus       188 d~g~YtC~v~n~~~~~~~  205 (213)
T 3r06_A          188 RHNLYTCEVTHKTSTAAI  205 (213)
T ss_dssp             TCCEEEEEEEETTCSSCE
T ss_pred             cCCeEEEEEEecccCcce
Confidence            999999999998755443

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.88  E-value=2.6e-21  Score=151.45  Aligned_cols=191  Identities=17%  Similarity=0.245  Sum_probs=115.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-eeEE--Eeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QTIL--SIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +..++..+.+.+|+++.|.|.+.+.+.+.+.|++.+. ..+.  ....  .......++.+.... ..+.|.|.+++.+|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~~D   82 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVETED   82 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEcCC-CEEEEEECCCChhh
Confidence            4556778999999999999999988778899998542 2111  1000  001112466665422 34489999999999


Q ss_pred             CeEEEEEEecCCCc--ceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTVPMT--SQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~~~~~~~~~~~  171 (314)
                      +|.|+|.+.+....  .....|.|..   +|.+.....  ......|+.+.|.|.+.+ .|.+ .+.|++ ++..+....
T Consensus        83 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~g~~~~l~C~~~g~~p~~~~v~W~k-~g~~~~~~~  159 (213)
T 3d9a_L           83 FGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSERQNGV  159 (213)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEEECTTE
T ss_pred             CEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECC--ChhhcCCCcEEEEEEEeeecCCceEEEEEc-CCCcCccee
Confidence            99999999764321  2223566654   444443321  111235667777777766 3444 677777 443321000


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                                                                  .    ....... .++.|...+.|.|.++..+|+|.
T Consensus       160 --------------------------------------------~----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  191 (213)
T 3d9a_L          160 --------------------------------------------L----NSWTDQDSKDSTYSMSSTLTLTKDEYERHNS  191 (213)
T ss_dssp             --------------------------------------------E----EEECCCCTTTCCEEEEEEEEEEHHHHHHCCE
T ss_pred             --------------------------------------------e----ecCCCccCCCCCEEEEEEEEEeccccCCCCE
Confidence                                                        0    0000000 11124445699999999999999


Q ss_pred             EEEEEeeCCCCceeEE
Q psy15734        251 YRCVAVNALGETDGFI  266 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~  266 (314)
                      |+|.|.|.........
T Consensus       192 Y~C~a~n~~~~~~~~~  207 (213)
T 3d9a_L          192 YTCEATHKTSTSPIVK  207 (213)
T ss_dssp             EEEEEECTTCSSCEEE
T ss_pred             EEEEEEEccCCCceEE
Confidence            9999999876654333

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.87  E-value=5e-21  Score=146.93  Aligned_cols=176  Identities=13%  Similarity=0.112  Sum_probs=112.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+.. .+.+|++++|.|.+.+ +...+.|+|++ ..+...     ... .    ......+.|.|.+++.+|+
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g-~~~~~~-----~~~-~----~~~~~~~~L~I~~v~~~D~   69 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEG-SLFAVD-----RPK-P----PERINKVKFYIPDMNSRMA   69 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETT-EEEEEE-----CCS-S----CTTCCEEEEEESSCCGGGC
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCC-CCCEEEEEECC-Cccccc-----ccc-c----CCCcceeEEEeCcCCcccC
Confidence            46777777766 7999999999999976 44689999954 332210     000 0    0111234799999999999


Q ss_pred             eEEEEEEecCC---CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee
Q psy15734        100 GWYMCQINTVP---MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL  173 (314)
Q Consensus       100 G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~  173 (314)
                      |.|+|.+.+..   ..+..+.|.|..   +|.+...+   ...+.+|+.++|.|.+.+ +.+.+.|++ ++..       
T Consensus        70 G~Y~C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~L~C~~~~-~~~~~~w~k-~g~~-------  137 (188)
T 1oll_A           70 GQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDT-ATSMFLLLK-EGRS-------  137 (188)
T ss_dssp             EEEEEEEEETTEECCCCCCEEEEEESCSCCCEEEEES---CSEEETTCEEEEEEECSS-SCSEEEEEE-ESSS-------
T ss_pred             eEEEEEecCCCCCCCCCCceEEEecccCCCCeEEECC---CCccccCCEEEEEEEcCC-CCCEEEEEE-CCcc-------
Confidence            99999997642   224456666654   34443322   334677888888887654 345677776 3221       


Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                                                                ...   ... ....     ...|.|.+++.+|+|.|+|
T Consensus       138 ------------------------------------------~~~---~~~-~~~~-----~~~L~I~~v~~~d~G~Y~C  166 (188)
T 1oll_A          138 ------------------------------------------SHV---QRG-YGKV-----QAEFPLGPVTTAHRGTYRC  166 (188)
T ss_dssp             ------------------------------------------CEE---EEE-ECSS-----EEEEEEEECCGGGCEEEEE
T ss_pred             ------------------------------------------ccc---ccc-CCCc-----eeEEEECCCCcCCCcEEEE
Confidence                                                      111   000 0001     2399999999999999999


Q ss_pred             EEeeCC---CCceeEEEEEEE
Q psy15734        254 VAVNAL---GETDGFIKVYVN  271 (314)
Q Consensus       254 ~a~n~~---g~~~~~~~l~V~  271 (314)
                      .|.|..   ...+..+.|.|.
T Consensus       167 ~a~n~~~~~s~~S~~~~l~V~  187 (188)
T 1oll_A          167 FGSYNNHAWSFPSEPVKLLVT  187 (188)
T ss_dssp             ECEEETTEECCCCCCEEEEEE
T ss_pred             EEEcCCCcCCCCCCcEEEEec
Confidence            999875   233455666654

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.87  E-value=9.4e-22  Score=153.80  Aligned_cols=188  Identities=16%  Similarity=0.233  Sum_probs=115.6

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeE--EEeeee--eeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTI--LSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      |.+..++ .+.+.+|++++|.|.+.  +.+.+.|++.+ +..+  ......  ......|+.+... ...++|.|.+++.
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~   77 (211)
T 3tv3_L            2 SALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSKS-GNTASLTVSGLQT   77 (211)
T ss_dssp             -CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEEESCCG
T ss_pred             ceEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEcc-CCEEEEEECCCCh
Confidence            3455566 88999999999999998  77899999952 1111  110000  0012346665542 3345899999999


Q ss_pred             CCCeEEEEEEecCCC---cceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEecccC--CCceEEEcCCCcee
Q psy15734         97 TDRGWYMCQINTVPM---TSQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGYP--EPYVAWRREDGKAI  167 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~---~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~~~~~~  167 (314)
                      +|+|.|+|.+.+...   ......|.|.    .+|.+...+  ....+.+|+.+.|.|.+.+.+  .+.+.|++ ++..+
T Consensus        78 ~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~l  154 (211)
T 3tv3_L           78 DDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFP--PSSEELQANKATLVCLISDFYPGAVTVAWKA-DSSPV  154 (211)
T ss_dssp             GGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEEC--CCHHHHHTTCEEEEEEEEEEBSSCCEEEEEE-TTEEE
T ss_pred             hHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecC--CchhhhcCCCeEEEEEeeeecCCCeEEEEEE-CCeec
Confidence            999999999976543   3344566666    344444332  111223567777777766642  35666766 43332


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-eee-EeeCCeeeEEEEEEeecCC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-EDS-RLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~-~~~~~~~~~s~L~i~~~~~  245 (314)
                      .                                                  ..... ... ...+.|...+.|.|.++..
T Consensus       155 ~--------------------------------------------------~~~~~~~~~~~~~~~~~~~s~L~i~~~~~  184 (211)
T 3tv3_L          155 K--------------------------------------------------AGVETTTPSKQSNNKYAASSYLSLTPEQW  184 (211)
T ss_dssp             C--------------------------------------------------TTEEECCCEECTTSSEEEEEEEEECHHHH
T ss_pred             C--------------------------------------------------CCcccCCceECCCCCEEEEEEEEEcHHHh
Confidence            1                                                  10000 000 1112244556899999999


Q ss_pred             CCCeEEEEEEeeCCCCceeEE
Q psy15734        246 HQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      +|+|.|+|.|.|..+...+++
T Consensus       185 ~d~g~Y~C~v~~~~~~~~~~~  205 (211)
T 3tv3_L          185 KSHRSYSCQVTHEGSTVEKTV  205 (211)
T ss_dssp             HHSSCEEEEEEETTEEEEEEE
T ss_pred             CCCCeEEEEEEECCCCEEeec
Confidence            999999999999987655554

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.87  E-value=2.6e-21  Score=152.18  Aligned_cols=85  Identities=14%  Similarity=0.293  Sum_probs=58.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEEEeee-------e--eeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTILSIHH-------K--VVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~~~~~-------~--~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|++ +..+.....       .  ......|+.+..+. ...++|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (219)
T 1c1e_H            5 VQSGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETSATTAYLQIN   84 (219)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGGGTEEEEEEC
T ss_pred             eCCCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecCCCEEEEEEC
Confidence            345577899999999999998754  6899999964 322211100       0  01124577766432 234689999


Q ss_pred             eecCCCCeEEEEEEecCC
Q psy15734         93 DVQETDRGWYMCQINTVP  110 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~  110 (314)
                      +++.+|+|.|+|.+.+..
T Consensus        85 ~v~~~D~G~Y~C~~~~~~  102 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTI  102 (219)
T ss_dssp             SCCGGGCEEEEEEEEETT
T ss_pred             CCCcccCEEEEEEEeccC
Confidence            999999999999997653

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.87  E-value=1.5e-20  Score=151.49  Aligned_cols=204  Identities=16%  Similarity=0.255  Sum_probs=125.6

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeE---EEee------eeeeecCcCEEEEeC-CceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTI---LSIH------HKVVTQNKRVSITFN-DHRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~---~~~~------~~~~~~~~~~~~~~~-~~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+. ..+   ....      ........|+.+..+ ....++|.|.
T Consensus         5 ~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~   84 (256)
T 1nqb_A            5 QQSGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPSSTAYMQLS   84 (256)
T ss_dssp             EECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCCCEEEEEEC
Confidence            345678899999999999998764  57999999532 211   1100      000112467777654 2345689999


Q ss_pred             eecCCCCeEEEEEEecCCC------cceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC-----ceEEEc
Q psy15734         93 DVQETDRGWYMCQINTVPM------TSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-----YVAWRR  161 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-----~~~W~~  161 (314)
                      +++.+|+|.|.|.+.+...      ......|.|..+|.+...  +....+.+|++++|.|.+.+.|.+     .+.|++
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSDIELTQT--PLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCCCCEEEE--CSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeecccccEEec--CcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            9999999999999976522      122356777666655443  356678899999999999888664     899998


Q ss_pred             CC-CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734        162 ED-GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       162 ~~-~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      .. +..+                          .+            ..+...........++..... .   ...+|.|
T Consensus       163 ~~~g~~~--------------------------~~------------~~~~~~~~~~~~~~r~~~~~~-~---~~~~L~I  200 (256)
T 1nqb_A          163 QKPGQSP--------------------------KL------------LIYKVSNRFSGVPDRFSGSGS-G---TDFTLKI  200 (256)
T ss_dssp             ECTTSCE--------------------------EE------------EEETTTEECTTCCTTEEEEEE-T---TEEEEEE
T ss_pred             ECCCCCc--------------------------EE------------EEEEeCCCCCccCCcEEEEcc-C---CEEEEEE
Confidence            31 1110                          00            000000000000122222111 1   1348999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec
Q psy15734        241 RSILSHQFGSYRCVAVNALGET-DGFIKVYVNLV  273 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  273 (314)
                      .+++.+|+|.|+|.|.|..... .....|.|...
T Consensus       201 ~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~~  234 (256)
T 1nqb_A          201 SRVEAEDLGVYYCFQGSHVPYTFGGGTKLEIKRA  234 (256)
T ss_dssp             SSCCGGGCEEEEEEECSSSSCEECCCEEEEECC-
T ss_pred             CCCChHHCEEEEEEEccCCceEECCCEEEEEECC
Confidence            9999999999999999854322 23445666543

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.87  E-value=2.8e-21  Score=153.85  Aligned_cols=196  Identities=15%  Similarity=0.199  Sum_probs=119.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e--e-EEEe-eeeeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q--T-ILSI-HHKVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~--~-~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+. .  . +... .......+.|+..... ...++|.|.++
T Consensus        23 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v  101 (237)
T 3sob_L           23 ADIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTDFTLTISSL  101 (237)
T ss_dssp             -CCCEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSC
T ss_pred             ccceEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEcC-CCEEEEEECCC
Confidence            34566777888999999999999999888888999999531 1  1 1111 0111122456666532 23458999999


Q ss_pred             cCCCCeEEEEEEecCCC--cceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEeccc-C-CCceEEEcCCCcee
Q psy15734         95 QETDRGWYMCQINTVPM--TSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGY-P-EPYVAWRREDGKAI  167 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~~~W~~~~~~~~  167 (314)
                      +.+|+|.|+|.+.+...  ......|.|..   +|.+....  ....+.+|+.+.|.|.+.+. | .+.+.|++ ++..+
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~--~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~k-~g~~~  178 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFP--PSDEQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQ  178 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEEC--CCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-TTEEC
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeC--CChhhccCCceEEEEEEcccCCCceEEEEEE-CCCCC
Confidence            99999999999965432  22334555533   34443322  11123346677777777763 4 46777777 44332


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~  246 (314)
                      ...                                            ..    ....... .++.|...+.|.|.....+
T Consensus       179 ~~~--------------------------------------------~~----~~~~~~~~~~g~~~~~s~L~i~~~~~~  210 (237)
T 3sob_L          179 SGN--------------------------------------------SQ----ESVTEQDSKDSTYSLSSTLTLSKADYE  210 (237)
T ss_dssp             CSS--------------------------------------------EE----EEECCCCTTTCCEEEEEEEEEEHHHHT
T ss_pred             CCc--------------------------------------------ee----ecccccccCCCcEEEEEEEEEcHHHcc
Confidence            100                                            00    0000001 1112444568999999999


Q ss_pred             CCeEEEEEEeeCCCCceeEEE
Q psy15734        247 QFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      |+|.|+|.|.|..........
T Consensus       211 d~g~Y~C~a~n~~~~~~~~~~  231 (237)
T 3sob_L          211 KHKVYACEVTHQGLSSPVTKS  231 (237)
T ss_dssp             TCCEEEEEEECTTCSSCEEEE
T ss_pred             CCCcEEEEEeeCCCCCceeee
Confidence            999999999998865544433

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.87  E-value=2.5e-21  Score=148.08  Aligned_cols=158  Identities=16%  Similarity=0.203  Sum_probs=102.8

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...+|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++...                 ..   ..+.|.|.+++.+
T Consensus         5 ~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~~-----------------~~---~~~~L~i~~v~~~   62 (184)
T 2gi7_A            5 PLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSSR-----------------YQ---DQAVLFIPAMKRS   62 (184)
T ss_dssp             CBCCCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTCC-----------------EE---SSSEEEESSCCGG
T ss_pred             CCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCccc-----------------cC---cccEEEECcCChh
Confidence            3467777777765 7999999999999987 67899999965320                 00   1127999999999


Q ss_pred             CCeEEEEEEecCC---CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC
Q psy15734         98 DRGWYMCQINTVP---MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG  171 (314)
Q Consensus        98 d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~  171 (314)
                      |+|.|+|.+.+..   ..+..+.|.|..   +|.+...+   ...+.+|+.+.|.|.+.+.| +.+.|++ ++       
T Consensus        63 D~G~Y~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p---~~~v~~G~~v~l~C~~~~~~-~~~~w~k-~g-------  130 (184)
T 2gi7_A           63 LAGRYRCSYQNGSLWSLPSDQLELVATGVFAKPSLSAQP---GPAVSSGGDVTLQCQTRYGF-DQFALYK-EG-------  130 (184)
T ss_dssp             GCEEEEEEEEETTEEBCCCCCEEEEEESSSCCCEEEEEC---CCSSCCTTCEEEEEECSSCC-CEEEEEE-CC-------
T ss_pred             hCceEEEEEEcCCCccCCCCCEEEEecCcCCCCEEEeCC---CceecCCCcEEEEEEcCCCC-cEEEEEE-CC-------
Confidence            9999999997643   223445566643   23333222   22345666666666654432 4566665 22       


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                                                                .... ....   ...     ....|.|.+++.+|+|.|
T Consensus       131 ------------------------------------------~~~~-~~~~---~~~-----~~~~L~i~~v~~~D~G~Y  159 (184)
T 2gi7_A          131 ------------------------------------------DPAP-YKNP---ERW-----YRASFPIITVTAAHSGTY  159 (184)
T ss_dssp             ------------------------------------------CCTT-SCCC---CEE-----EEESSSEEEETTCCSEEE
T ss_pred             ------------------------------------------CcCc-ceec---CCC-----ceEEEEEccCCccCCeEE
Confidence                                                      2111 1000   001     123899999999999999


Q ss_pred             EEEEeeCCC
Q psy15734        252 RCVAVNALG  260 (314)
Q Consensus       252 ~C~a~n~~g  260 (314)
                      +|.|.|..+
T Consensus       160 ~C~a~n~~~  168 (184)
T 2gi7_A          160 RCYSFSSRD  168 (184)
T ss_dssp             EEEEECTTS
T ss_pred             EEEEEeCCC
Confidence            999999764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.87  E-value=2.3e-20  Score=150.39  Aligned_cols=141  Identities=16%  Similarity=0.226  Sum_probs=94.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ce---eEEEee------eeeeecCcCEEEEeCC-ce
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMI-TQ---TILSIH------HKVVTQNKRVSITFND-HR   85 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~---~~~~~~------~~~~~~~~~~~~~~~~-~~   85 (314)
                      ..+|.+..++..+.+.+|++++|.|.+.+.  +.+.+.|+|.. +.   .+....      ........|+.+..+. ..
T Consensus         4 ~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   83 (256)
T 3juy_B            4 HHHQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSAN   83 (256)
T ss_dssp             ---CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT
T ss_pred             ccceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCCC
Confidence            456778888999999999999999999873  56899999853 11   111111      0011123577776432 34


Q ss_pred             eEEEEEeeecCCCCeEEEEEEecC-------------CCcceeEEEEEEeCC---------------ceeeecCcceeEE
Q psy15734         86 SWFLHLRDVQETDRGWYMCQINTV-------------PMTSQKGYLQVVVPP---------------RILLDRTSTDVVV  137 (314)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~~-------------~~~~~~~~l~v~~~p---------------~~~~~~~~~~~~~  137 (314)
                      .++|.|.+++.+|+|.|.|.+.+.             ........|.|..++               .+...  +....+
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v  161 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQA--PGTLSL  161 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEE--CSEEEE
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEec--CCeEEE
Confidence            568999999999999999999664             112234456766532               22222  456677


Q ss_pred             ecCceEEEEEEecccCC-CceEEEc
Q psy15734        138 REGTEVTLECSAVGYPE-PYVAWRR  161 (314)
Q Consensus       138 ~~g~~~~l~C~~~~~p~-p~~~W~~  161 (314)
                      .+|++++|.|.+.+.+. +.+.|++
T Consensus       162 ~~G~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          162 SPGERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             CTTSCEEEEEEESSCCTTCCEEEEE
T ss_pred             eCCCCEEEEEEECCCcCCeeEEEEE
Confidence            88888888888887765 7888887

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.87  E-value=1.3e-21  Score=148.49  Aligned_cols=164  Identities=13%  Similarity=0.132  Sum_probs=102.5

Q ss_pred             cceEEEcCCcEEEEEEecC--CCceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         29 ANVTATVGKEALMACVVEN--LREYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+.+.+|++++|.|...+  .+.+.+.|+|++ ..+.....  .....+.|+.+..+    ++|.|.+++.+|+|.|+|
T Consensus         4 ~~v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~-~~i~~~~~~~~~~~~~~r~~~~~~----gsL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            4 GTVWGALGHGINLNIPNFQMTDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEILAN----GDLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEEEETTSCEEECCTTCCCCTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEECTT----SCEEESSCCGGGCEEEEE
T ss_pred             eEEEEEcCCcEEEcCCCCCcccccccEEEEeCC-ceeEEEcCCCeecCCCCeEEECCC----CcEEEcccccccCEEEEE
Confidence            3577899999999995433  456799999955 33321110  11223567666433    269999999999999999


Q ss_pred             EEecCC-Cc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcC
Q psy15734        105 QINTVP-MT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP  181 (314)
Q Consensus       105 ~~~~~~-~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~  181 (314)
                      .+.+.. ..  ...+.|.|..++...      .. ...+..+.|.|.+.+.|.|.+.|++                    
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~~~~~p------~i-~~~~~~v~L~C~~~g~p~p~i~W~~--------------------  131 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILEMVSKP------MI-YWECSNATLTCEVLEGTDVELKLYQ--------------------  131 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEECCCCCC------EE-EEETTTTEEEEECSSCSSCEEEEEE--------------------
T ss_pred             EEEeCCCCEEEEEEEEEEEeCCCCCC------EE-EecCCcEEEEEEecCCCCcEEEEEE--------------------
Confidence            997653 32  444566666532110      01 1122335556655555555555555                    


Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                                                    + +..+....               .+.|..+..+|+|.|+|.|.|..|.
T Consensus       132 ------------------------------~-g~~l~~~~---------------~~~i~~~~~~d~G~Y~C~a~N~~g~  165 (176)
T 1hng_A          132 ------------------------------G-KEHLRSLR---------------QKTMSYQWTNLRAPFKCKAVNRVSQ  165 (176)
T ss_dssp             ------------------------------T-TEEEEEES---------------SSEEEEECSCCSSCEEEEEEETTEE
T ss_pred             ------------------------------C-CEECCCCC---------------cEEEEEEEccCCeEEEEEEEecCCC
Confidence                                          3 32222211               2344477799999999999999998


Q ss_pred             ceeEEEEEE
Q psy15734        262 TDGFIKVYV  270 (314)
Q Consensus       262 ~~~~~~l~V  270 (314)
                      ..+...|.+
T Consensus       166 ~~~~~~l~~  174 (176)
T 1hng_A          166 ESEMEVVNC  174 (176)
T ss_dssp             EEEEECCCC
T ss_pred             ceecccccC
Confidence            888776644

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.87  E-value=7.2e-21  Score=148.67  Aligned_cols=185  Identities=18%  Similarity=0.256  Sum_probs=111.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-eeE--EEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QTI--LSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +.. |..+.+.+|++++|.|.+.+.+.+.+.|++.+. ..+  .....  .......|+.+... ...+.|.|.+++.+|
T Consensus         4 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D   81 (210)
T 1lk3_L            4 LTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGS-GTDFTLTIDPVEADD   81 (210)
T ss_dssp             EEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCCGGG
T ss_pred             EEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEec-CCEEEEEECCCCHHH
Confidence            444 778899999999999999888778899999532 111  11000  00111356665542 234589999999999


Q ss_pred             CeEEEEEEecCCCc--ceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTVPMT--SQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~~~~~~  171 (314)
                      +|.|.|.+.+....  .....|.|..   +|.+......  .....|+.+.|.|.+.|. |.+ .+.|++ ++..+.   
T Consensus        82 ~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-~g~~~~---  155 (210)
T 1lk3_L           82 TAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPS--TEQLATGGASVVCLMNNFYPRDISVKWKI-DGTERR---  155 (210)
T ss_dssp             CEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCC--HHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC---
T ss_pred             CeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCc--hhhccCCcEEEEEEEEeEeCCceEEEEEe-CCccCC---
Confidence            99999999764321  1223555544   3444332211  112356667777776653 333 566666 333221   


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeE-eeCCeeeEEEEEEeecCCCCC
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSR-LINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                                                     ..  ....... .++.|...+.|.|.++..+|+
T Consensus       156 -----------------------------------------------~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  188 (210)
T 1lk3_L          156 -----------------------------------------------DGVLDSVTDQDSKDSTYSMSSTLSLTKADYESH  188 (210)
T ss_dssp             -----------------------------------------------TTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTC
T ss_pred             -----------------------------------------------CCceEccCCccCCCCCEEEEEEEEEChHHhccC
Confidence                                                           11  0000000 112244556999999999999


Q ss_pred             eEEEEEEeeCCCCce
Q psy15734        249 GSYRCVAVNALGETD  263 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~  263 (314)
                      |.|+|.|.|......
T Consensus       189 G~Y~C~a~n~~~~~~  203 (210)
T 1lk3_L          189 NLYTCEVVHKTSSSP  203 (210)
T ss_dssp             CEEEEEEECTTCSSC
T ss_pred             CcEEEEEEecCCCCe
Confidence            999999999876543

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.87  E-value=2.5e-20  Score=150.15  Aligned_cols=204  Identities=18%  Similarity=0.264  Sum_probs=120.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEEEe---------eeeeeecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTILSI---------HHKVVTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.. +..+...         .........|+.+..+. ...++|.|.+
T Consensus         8 ~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~   87 (256)
T 3umt_A            8 QSGLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKSSSTAYLELRS   87 (256)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             ccCceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecCCCEEEEEECC
Confidence            34457799999999999998755  6799999853 2221111         00011234577776543 3456799999


Q ss_pred             ecCCCCeEEEEEEecC-----CCcceeEEEEEEe----------------CCceeeecCcceeEEecCceEEEEEEeccc
Q psy15734         94 VQETDRGWYMCQINTV-----PMTSQKGYLQVVV----------------PPRILLDRTSTDVVVREGTEVTLECSAVGY  152 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~-----~~~~~~~~l~v~~----------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~  152 (314)
                      ++.+|+|.|+|.+.+.     ........|.|..                ++.+...  +....+.+|+.++|.|.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~~  165 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQS--PSSLSASLGERVSITCRASQD  165 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEE--CSEEEECTTCCEEEEEEESSC
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcC--CCeEEEECCCCEEEEEEEecC
Confidence            9999999999999654     1123345667664                3333332  345667788888888888877


Q ss_pred             CCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCe
Q psy15734        153 PEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY  232 (314)
Q Consensus       153 p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~  232 (314)
                      |.+.+.|++....                         ....+           +.+ ...........++.....  + 
T Consensus       166 ~~~~v~W~k~~~~-------------------------~~~~~-----------~~~-~~~~~~~~~~~r~~~~~~--~-  205 (256)
T 3umt_A          166 IGSNLNWLQQKPD-------------------------GTIKR-----------LIY-ATSSLDSGVPKRFSGSRS--G-  205 (256)
T ss_dssp             CTTCEEEEEECTT-------------------------CCEEE-----------EEE-TTTEECTTSCTTEEEEEE--T-
T ss_pred             CCcEEEEEEECCC-------------------------CCcEE-----------EEE-eccccCCccCCCEEEecC--C-
Confidence            7778888873110                         00000           000 000000001122222211  1 


Q ss_pred             eeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec
Q psy15734        233 SCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLV  273 (314)
Q Consensus       233 ~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  273 (314)
                       ...+|.|.+++.+|+|.|+|.|.|..+.. .....|.|...
T Consensus       206 -~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~fg~gt~L~V~~~  246 (256)
T 3umt_A          206 -SDYSLTISSLESEDFVDYYCLQYASSPPTFGGGTKLEIKRA  246 (256)
T ss_dssp             -TEEEEEECSCCGGGCSEEEEEECSSSSCEECCCEEEEEC--
T ss_pred             -CEEEEEECCCChhHCEEEEEEEeeCCCcEECCCEEEEEECC
Confidence             13489999999999999999999865432 23445555543

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.87  E-value=2.2e-21  Score=155.63  Aligned_cols=198  Identities=17%  Similarity=0.172  Sum_probs=114.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCce-----EEEEEEcCcee----EEEeee--ee--eecCcCEEEEeCCceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLREY-----KVAWVKMITQT----ILSIHH--KV--VTQNKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~-----~v~W~~~~~~~----~~~~~~--~~--~~~~~~~~~~~~~~~~~~L~i~   92 (314)
                      .++..+.+.+|++++|.|.+.+.+.+     .+.|++.+...    ......  ..  +....++.........++|.|.
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   87 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSPWRLKSGDASLRLP   87 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCHHHHTTTBCCEEES
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEeccCCCCcEEEEeC
Confidence            45667889999999999999765554     49999964321    111000  00  0001111101111223469999


Q ss_pred             eecCCCCeEEEEEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEcCCCceeec
Q psy15734         93 DVQETDRGWYMCQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRREDGKAINY  169 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~~~~~~~~~  169 (314)
                      +++.+|+|.|+|.+.+.. .....+.|.|..+|.+...+.   .....|+.+.|.|.+.+ +|.| .+.|++ ++..+..
T Consensus        88 ~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~---~~~~~~~~~~L~C~~~g~~P~pi~v~W~k-~g~~l~~  163 (248)
T 3pv7_A           88 GIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASPASRLLLD---QVGMKENEDKYMCESSGFYPEAINITWEK-QTQKFPH  163 (248)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEECC-----------CEEEEEEEEEBSSCCEEEEEE-ECSSSCS
T ss_pred             CCCHHHCeEEEEEEEeCCccceeEEEEEEecCCceEEecC---CccccCCCcEEEEEEccEECCCeEEEEEE-CCccCCC
Confidence            999999999999997653 345567788888888766542   23446777889999988 6888 899998 4433211


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~  248 (314)
                      .....                                      .+..     ....... ++.+...+.|.|.....+|.
T Consensus       164 ~~~~~--------------------------------------~~~~-----~~~~~~~~~~~~~~~s~L~i~~~~~~d~  200 (248)
T 3pv7_A          164 PIEIS--------------------------------------EDVI-----TGPTIKNMDGTFNVTSCLKLNSSQEDPG  200 (248)
T ss_dssp             CEEEC--------------------------------------TTEE-----EEEEEECTTSCEEEEEEEECC--CCCTT
T ss_pred             ccccc--------------------------------------ccee-----ecccEECCCCCEEEEEEEEEcCccccCC
Confidence            00000                                      0000     0000011 11234456899999999999


Q ss_pred             eEEEEEEeeCCCCcee--EEEEEE
Q psy15734        249 GSYRCVAVNALGETDG--FIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~--~~~l~V  270 (314)
                      |.|+|.|.|..+....  .+.|.|
T Consensus       201 g~YtC~a~n~~~~~~~~~~v~l~V  224 (248)
T 3pv7_A          201 TVYQCVVRHASLHTPLRSNFTLTA  224 (248)
T ss_dssp             CEEEEEEECTTCSSCEEEEECC--
T ss_pred             CEEEEEEECCCCCCCcEEEEEEEE
Confidence            9999999999987544  555555

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.87  E-value=3.5e-20  Score=149.06  Aligned_cols=207  Identities=17%  Similarity=0.252  Sum_probs=124.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEEEe---------eeeeeecCcCEEEEeCC-ceeEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTILSI---------HHKVVTQNKRVSITFND-HRSWFLH   90 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~~~---------~~~~~~~~~~~~~~~~~-~~~~~L~   90 (314)
                      ++.++..+.+.+|++++|.|.+.+.+  .+.+.|+|.. +..+...         .........|+.+..+. ...++|.
T Consensus         4 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   83 (253)
T 3uzq_A            4 LLEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSSNTAYLH   83 (253)
T ss_dssp             CEEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEE
T ss_pred             eEecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCCCeEEEE
Confidence            44567788999999999999998743  6799999942 2221111         00111224577766543 3456799


Q ss_pred             EeeecCCCCeEEEEEEecCCCc--ceeEEEEEEe---------------CCceeeecCcceeEEecCceEEEEEEecccC
Q psy15734         91 LRDVQETDRGWYMCQINTVPMT--SQKGYLQVVV---------------PPRILLDRTSTDVVVREGTEVTLECSAVGYP  153 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  153 (314)
                      |.+++.+|+|.|+|.+.+....  .....|.|..               ++.+...  +....+.+|++++|.|.+.+.+
T Consensus        84 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~--p~~~~v~~G~~v~L~C~~~~~~  161 (253)
T 3uzq_A           84 LSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQT--PASLAVSLGQRATISCRASENV  161 (253)
T ss_dssp             ECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEE--CSEEEECTTSCEEEEEEESSCC
T ss_pred             eCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECc--CCeEEEeCCCCEEEEEEecCcc
Confidence            9999999999999999764222  2345666664               2333322  3556788899999999888877


Q ss_pred             CC----ceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEee
Q psy15734        154 EP----YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI  229 (314)
Q Consensus       154 ~p----~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~  229 (314)
                      .+    .+.|++.....                         ...           .+.+ ...........++.... .
T Consensus       162 ~~~~~~~v~W~r~~~~~-------------------------~~~-----------~~~~-~~~~~~~~~~~r~~~~~-~  203 (253)
T 3uzq_A          162 DRYGNSFMHWYQQKAGQ-------------------------PPK-----------LLIY-RASNLESGIPARFSGSG-S  203 (253)
T ss_dssp             EETTEECEEEEEECTTS-------------------------CCE-----------EEEE-TTTEECTTCCTTEEEEE-E
T ss_pred             ccCCCcEEEEEEECCCC-------------------------CCE-----------EEEE-EccccCCccCCceEEeC-C
Confidence            65    88898731100                         000           0000 00000000012222211 1


Q ss_pred             CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec
Q psy15734        230 NGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLV  273 (314)
Q Consensus       230 ~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~  273 (314)
                      .   ...+|.|.+++.+|+|.|+|.|.|..+.. ..-..|.|...
T Consensus       204 ~---~~~~L~I~~v~~~DsG~Y~C~~~n~~~~~fg~gt~l~v~~~  245 (253)
T 3uzq_A          204 R---TDFTLTINPVEADDVATYFCQRSNEVPWTFGGGTKLEIKRP  245 (253)
T ss_dssp             T---TEEEEEESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCC
T ss_pred             C---CEEEEEECCCCHHHCEEEEEEEccCCCcEECCCEEEEEcCC
Confidence            1   13489999999999999999999965443 23445555544

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.87  E-value=2.1e-20  Score=150.67  Aligned_cols=137  Identities=21%  Similarity=0.345  Sum_probs=92.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEe--eeeeeecCcCEEEEe-CCceeEEEEEeee
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSI--HHKVVTQNKRVSITF-NDHRSWFLHLRDV   94 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~--~~~~~~~~~~~~~~~-~~~~~~~L~i~~~   94 (314)
                      ..+..++..+.+.+|++++|.|.+.+.+.+.+.|+|... .   .+...  .........|+.+.. .....++|.|.++
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   83 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSDSSFHLRKASV   83 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTTTEEEEEESSC
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCCCEEEEEECCC
Confidence            456677888999999999999999888889999998531 1   11111  011122345666642 3334568999999


Q ss_pred             cCCCCeEEEEEEecCCC-----cceeEEEEEEe--------------------CCceeeecCcceeEEecCceEEEEEEe
Q psy15734         95 QETDRGWYMCQINTVPM-----TSQKGYLQVVV--------------------PPRILLDRTSTDVVVREGTEVTLECSA  149 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~--------------------~p~~~~~~~~~~~~~~~g~~~~l~C~~  149 (314)
                      +.+|+|.|+|.+.+...     ......|.|..                    +|.+..  .+....+.+|+.++|.|.+
T Consensus        84 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~--~p~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           84 HRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQ--SPRNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             CGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEE--SCSEEEEETTCCEEECEEE
T ss_pred             CcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEe--cCCEEEEeCCCcEEEEEEc
Confidence            99999999999976432     12234566654                    222322  2455667788888888888


Q ss_pred             cccCCCceEEEc
Q psy15734        150 VGYPEPYVAWRR  161 (314)
Q Consensus       150 ~~~p~p~~~W~~  161 (314)
                      .+. .+.+.|++
T Consensus       162 ~~~-~~~v~W~k  172 (256)
T 3tf7_C          162 TNS-HNYMYWYR  172 (256)
T ss_dssp             CSC-CSEEEEEE
T ss_pred             CCC-ceEEEEEE
Confidence            765 66888887

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.87  E-value=4.5e-21  Score=151.16  Aligned_cols=187  Identities=17%  Similarity=0.301  Sum_probs=109.0

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-cee---EEEeee------eee--ecCcCEEEEeCC-ceeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQT---ILSIHH------KVV--TQNKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~---~~~~~~------~~~--~~~~~~~~~~~~-~~~~~L~i   91 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..   +.....      ...  ...+|+.+..+. ...++|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (222)
T 1q9r_B            6 ESGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQM   85 (222)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEE
T ss_pred             cCCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECCCCeEEEEE
Confidence            34567899999999999998754  6799999964 221   111100      000  123577776542 34568999


Q ss_pred             eeecCCCCeEEEEEEecCCC------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEE
Q psy15734         92 RDVQETDRGWYMCQINTVPM------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAW  159 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W  159 (314)
                      .+++.+|+|.|.|.+.+...      ......|.|..    +|.+....  ....+.+|+.+.|.|.+.|. |.| .+.|
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W  163 (222)
T 1q9r_B           86 NTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTW  163 (222)
T ss_dssp             CSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEEC--CCSCCCCSSEEEEEEEEEEEBSSCCEEEE
T ss_pred             CcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEcc--ccccccCCCcEEEEEEEccEECCCCEEEE
Confidence            99999999999999976431      12234555543    22222221  01112345555555555543 444 5555


Q ss_pred             EcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEE
Q psy15734        160 RREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~  239 (314)
                      ++                                                  ++..+...  ........+.|...+.|.
T Consensus       164 ~~--------------------------------------------------~g~~~~~~--~~~~~~~~~~~~~~s~L~  191 (222)
T 1q9r_B          164 NS--------------------------------------------------GSLSSGVH--TFPAVLQSDLYTLSSSVT  191 (222)
T ss_dssp             GG--------------------------------------------------GTBCTTEE--EEEEEEETTEEEEEEEEE
T ss_pred             ec--------------------------------------------------CCeEcceE--eccccccCCcEEEEEEEE
Confidence            54                                                  32111000  000111112244556899


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        240 IRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      |.++..+| |.|+|.|.|..|.......|
T Consensus       192 i~~~~~~d-g~y~C~a~n~~~~~~~~~~i  219 (222)
T 1q9r_B          192 VPSSTWPS-ETVTCNVAHPASSTKVDKKI  219 (222)
T ss_dssp             EETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             ECchhcCC-CeEEEEEEccCCCCcEEEec
Confidence            99999999 99999999999876555443

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.87  E-value=1.1e-20  Score=147.77  Aligned_cols=187  Identities=17%  Similarity=0.251  Sum_probs=109.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcC-ceeEEEee----eeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMI-TQTILSIH----HKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~-~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +.. +..+.+.+|++++|.|.+.+.+   .+.+.|++++ +..+....    ........|+.+... ...+.|.|.+++
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~   81 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI-GDKAALTITGAQ   81 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSCC
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEee-CCEEEEEECCCC
Confidence            444 7788999999999999998766   4789999964 22211100    000012346655542 233589999999


Q ss_pred             CCCCeEEEEEEecCCCc--ceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEecccC-CC-ceEEEcCCCcee
Q psy15734         96 ETDRGWYMCQINTVPMT--SQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGYP-EP-YVAWRREDGKAI  167 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~--~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-~p-~~~W~~~~~~~~  167 (314)
                      .+|+|.|.|.+.+....  .....|.|.    .+|.+.....  ...+..|+.+.|.|.+.+.+ ++ .+.|++ ++..+
T Consensus        82 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~l  158 (212)
T 1q0x_L           82 TEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPP--SSEELSTAKATLVCTITDFYPGVVTVDWKV-DGTPV  158 (212)
T ss_dssp             GGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECC--CHHHHTTTEEEEEEEEEEEBSSCCEEEEEE-TTEEE
T ss_pred             ccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCC--CHHHccCCcEEEEEEEEEEeCCCeEEEEEE-CCEeC
Confidence            99999999999764321  122345553    2333333221  11122455666666666542 22 566666 33222


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-eeeEeeC-CeeeEEEEEEeecCC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-EDSRLIN-GYSCHMTLKIRSILS  245 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~~~~-~~~~~s~L~i~~~~~  245 (314)
                                                                        ...... ......+ .|...+.|.|.++..
T Consensus       159 --------------------------------------------------~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~  188 (212)
T 1q0x_L          159 --------------------------------------------------TAGMETTQPSKQSNNKYMASSYLTLTARAW  188 (212)
T ss_dssp             --------------------------------------------------CTTEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred             --------------------------------------------------CCCeecCCceeCCCCCEEEEEEEEEcHHHc
Confidence                                                              111000 0111112 245566899999999


Q ss_pred             CCCeEEEEEEeeCCCCceeE
Q psy15734        246 HQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      +|+|.|+|.|.|......++
T Consensus       189 ~d~g~Y~C~a~n~~~~~~~~  208 (212)
T 1q0x_L          189 ERHSSYSCQVTHEGHSSNKT  208 (212)
T ss_dssp             TTCCEEEEEEEETTEEEEEE
T ss_pred             cCCCcEEEEEEeCCcceeee
Confidence            99999999999987554433

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.87  E-value=1.7e-21  Score=169.58  Aligned_cols=216  Identities=15%  Similarity=0.207  Sum_probs=130.8

Q ss_pred             EEcCCcEEEEEEecCC-Cce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         33 ATVGKEALMACVVENL-REY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      +.+|+.+.|.|.+.+. |.+ .+.|++++.......... ....+.+...      ..|.|.+++.+| |.|+|.+.+..
T Consensus       135 ~~~g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~------s~L~i~~~~~~d-g~Y~C~a~n~~  206 (444)
T 1igt_B          135 DTTGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGVHTFPA-VLQSDLYTLS------SSVTVTSSTWPS-QSITCNVAHPA  206 (444)
T ss_dssp             CCCSSCEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECCC-EEETTEEEEE------EEEEECSTTTTT-SCCEEEEEETT
T ss_pred             CCCCCcEEEEEEEcceeCCCcEEEEecCCCCCCeEecCc-cccCCcEEEE------EEEEEchhhcCC-CeEEEEEEeCC
Confidence            4789999999999874 655 999998654310100000 0111222221      269999999999 99999998764


Q ss_pred             Ccc-eeEEEEE------------------EeCCceeeecCcceeE-EecCceEEEEEEecccC----CCceEEEcCCCce
Q psy15734        111 MTS-QKGYLQV------------------VVPPRILLDRTSTDVV-VREGTEVTLECSAVGYP----EPYVAWRREDGKA  166 (314)
Q Consensus       111 ~~~-~~~~l~v------------------~~~p~~~~~~~~~~~~-~~~g~~~~l~C~~~~~p----~p~~~W~~~~~~~  166 (314)
                      ... ....+.+                  ..+|.+...+ +.... +..|+.+.|.|.+.|.+    .+.+.|++ ++..
T Consensus       207 ~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~p~v~~~~-p~~~~~~~~G~~~~L~C~~~g~~~~p~~~~v~W~k-~~~~  284 (444)
T 1igt_B          207 SSTKVDKKIEPRGPTIKPCPPCKCPAPNLLGGPSVFIFP-PKIKDVLMISLSPIVTCVVVDVSEDDPDVQISWFV-NNVE  284 (444)
T ss_dssp             TTEEEEEECCCCCCSCCCCCCCSCCCSCCCCCCEEEEEC-CCHHHHHCTTSCCEEEEEEEEECTTCCCCEEEEEE-TTEE
T ss_pred             CCcceEEEeccCCCCcccCCccccCCcccCCCceEEecC-CchhheeecCCCcEEEEEEeecccCCCCeEEEEEE-CCcc
Confidence            332 2222221                  1134443332 22222 47899999999999884    35899999 5544


Q ss_pred             eecC----------C------eeC-------------------------------------CCeEEcCC-CcceeecCcc
Q psy15734        167 INYN----------G------ELV-------------------------------------PPMLTIPN-QLEGAFVSQT  192 (314)
Q Consensus       167 ~~~~----------~------~~~-------------------------------------~p~~~~~~-~~~~v~~g~~  192 (314)
                      +...          +      .+.                                     +|.+.+.+ ....+..| .
T Consensus       285 ~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~-~  363 (444)
T 1igt_B          285 VHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKK-Q  363 (444)
T ss_dssp             CSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSS-E
T ss_pred             ccCcccccceeCCCCcEEEEEEEEEcHHHhccCCcEEEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCC-e
Confidence            3211          0      000                                     34443322 22233444 5


Q ss_pred             EEEEEEEeec-CCc-eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        193 VELHCHTEAF-PAS-LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       193 ~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +.|.|.+.|. |++ .+.|++++.. +............++ |...+.|.|.....+|.|.|+|.|.|..-
T Consensus       364 ~~L~C~~~g~~P~~~~v~W~k~g~~-l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~YtC~a~n~~l  433 (444)
T 1igt_B          364 VTLTCMVTDFMPEDIYVEWTNNGKT-ELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEGL  433 (444)
T ss_dssp             EEEEEEEEEEBSSCCEEEEEETTEE-CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTTS
T ss_pred             EEEEEEEEeeeCCCCEEEEEECCEE-ccccccccceeCCCCCEEEEEEEEEChHHhcCCCeEEEEEECCCc
Confidence            9999999994 555 8999997543 321111111112333 66677899998888999999999999764

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=2.5e-20  Score=149.37  Aligned_cols=138  Identities=17%  Similarity=0.355  Sum_probs=84.5

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeE--E-Eee------eeeeecCcCEEEEeC-CceeEEE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTI--L-SIH------HKVVTQNKRVSITFN-DHRSWFL   89 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~--~-~~~------~~~~~~~~~~~~~~~-~~~~~~L   89 (314)
                      .+..+ ..+.+.+|++++|.|.+.+.+  .+.+.|+|.+. ..+  . ...      ........|+.+..+ ....++|
T Consensus         5 ~v~~p-~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   83 (247)
T 2ghw_B            5 QLVQS-GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSKNTLYL   83 (247)
T ss_dssp             EEEEE-CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTTTEEEE
T ss_pred             EEEec-CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCCCEEEE
Confidence            34334 468899999999999998876  57899999532 111  1 100      000112357776654 2345689


Q ss_pred             EEeeecCCCCeEEEEEEecCC-C--cceeEEEEEEeCCc-------------eeeecCcceeEEecCceEEEEEEecccC
Q psy15734         90 HLRDVQETDRGWYMCQINTVP-M--TSQKGYLQVVVPPR-------------ILLDRTSTDVVVREGTEVTLECSAVGYP  153 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~-~--~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p  153 (314)
                      .|.+++.+|+|.|+|.+.+.. .  ......|.|..++.             ......+....+.+|+.++|.|.+.+.|
T Consensus        84 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~  163 (247)
T 2ghw_B           84 QMNSLRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSV  163 (247)
T ss_dssp             EECSCCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             EECcCCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCc
Confidence            999999999999999997651 1  12234566654421             0011112344566677777777766666


Q ss_pred             CCceEEEc
Q psy15734        154 EPYVAWRR  161 (314)
Q Consensus       154 ~p~~~W~~  161 (314)
                      .+.+.|++
T Consensus       164 ~~~v~W~k  171 (247)
T 2ghw_B          164 RSNLAWYQ  171 (247)
T ss_dssp             TTCEEEEE
T ss_pred             cceEEEEE
Confidence            66677766

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=99.86  E-value=6.9e-22  Score=171.56  Aligned_cols=230  Identities=11%  Similarity=0.141  Sum_probs=136.3

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCC-Cce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENL-REY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +|.+........+.+|+.+.|.|.+.+. |.+ .+.|++++........ ......+.+...      ..|.|.+++.+|
T Consensus       119 ~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p~~v~W~k~~~~~~~~~~-~~~~~~~~~~~~------s~L~i~~~~~~d  191 (434)
T 1igy_B          119 PPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWNSGSLSSGVHTF-PAVLQSDLYTLS------SSVTVPSSPRPS  191 (434)
T ss_dssp             CCCEEEECCCCCCCCTTEEEEEEEEEEEBSSCCEEEETTTTBCSSEEEC-CCEECSSCEEEE------EEEEEETTTTTS
T ss_pred             CCeEEEcCCccccCCCCcEEEEEEEeeecCCCeEEEEeeCCcCCCeEec-CceecCCcEEEE------EEEEEcchhcCC
Confidence            4544432222235789999999999875 655 9999986532101000 001111233322      269999999999


Q ss_pred             CeEEEEEEecCCCc-ceeEEEEEEe----------C--CceeeecCccee-EEecCceEEEEEEecccC----CCceEEE
Q psy15734         99 RGWYMCQINTVPMT-SQKGYLQVVV----------P--PRILLDRTSTDV-VVREGTEVTLECSAVGYP----EPYVAWR  160 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~-~~~~~l~v~~----------~--p~~~~~~~~~~~-~~~~g~~~~l~C~~~~~p----~p~~~W~  160 (314)
                       |.|+|.+.+.... .....+.+..          +  |.+...+ +... .+.+|+.+.|.|.+.+.+    .+.+.|+
T Consensus       192 -g~Y~C~a~n~~~~~~~~~~~~~~~~~~~v~~~~~~~~p~v~~~~-p~~~~~v~~G~~~~L~C~~~g~~p~P~~~~i~W~  269 (434)
T 1igy_B          192 -ETVTCNVAHPASSTKVDKKIVPRDCGCKPCICTVPEVSSVFIFP-PKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWF  269 (434)
T ss_dssp             -SCCEEEEECTTTTCCEEEECCCCCCCCCCCCCCCSSSCCEEEEC-CCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBB
T ss_pred             -CcEEEEEEeCCCCccceeeccCCCCCCccccCCCCcCcEEEEeC-CChHHhcccCCCcEEEEEEeccccCCCCeEEEEE
Confidence             9999999875332 2223332210          0  3433332 1111 177899999999999883    3589999


Q ss_pred             cCCCceeecC----------Ce------eC-------------------------------------CCeEEcCCCccee
Q psy15734        161 REDGKAINYN----------GE------LV-------------------------------------PPMLTIPNQLEGA  187 (314)
Q Consensus       161 ~~~~~~~~~~----------~~------~~-------------------------------------~p~~~~~~~~~~v  187 (314)
                      + ++..+...          +.      +.                                     +|.+.+.+.....
T Consensus       270 k-~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~  348 (434)
T 1igy_B          270 V-DNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQ  348 (434)
T ss_dssp             S-SSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSS
T ss_pred             e-CCcccCCcccCcceeCCCCcEEEEEEEEECHHHccCCCcEEEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHH
Confidence            9 44443210          10      00                                     2333222222223


Q ss_pred             ecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..|+.+.|.|.+.|.++  +.+.|++++..+ ............+ .|...+.|.|.....+|+|.|+|.|.|....
T Consensus       349 ~~~~~~~L~C~~~g~~P~~~~v~W~k~g~~l-~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~g~YtC~a~n~~l~  424 (434)
T 1igy_B          349 MAKDKVSLTCMITDFFPEDITVEWQSDGQAP-ENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEGLH  424 (434)
T ss_dssp             SSSSEEEEEEEEEEEBCSCEEEEEEETTSCC-SCCEECCCCCCSSSCEEEEEEEEEEHHHHHTTCCEEEEEEETTSG
T ss_pred             hcCCcEEEEEEEEeeECCCeEEEEEECCEec-CCceeccceeCCCCcEEEEEEEEECchhccCCCEEEEEEEcCCCC
Confidence            35778999999999644  389999975443 2111111111223 3666778999999889999999999998654

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=99.86  E-value=1.7e-20  Score=153.36  Aligned_cols=178  Identities=17%  Similarity=0.214  Sum_probs=131.5

Q ss_pred             eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCee----------C-----------------
Q psy15734        122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGEL----------V-----------------  174 (314)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~----------~-----------------  174 (314)
                      .+|.+...  +....+.+|+.+.|.|.+.+.|.+.+.|++ ++..+......          .                 
T Consensus         4 ~pP~~~~~--p~~~~~~~G~~v~l~C~~~g~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~d~G~Y~C~~   80 (284)
T 2rik_A            4 APPFFDLK--PVSVDLALGESGTFKCHVTGTAPIKITWAK-DNREIRPGGNYKMTLVENTATLTVLKVTKGDAGQYTCYA   80 (284)
T ss_dssp             CCCEEEEC--CCCEEEETTCCEEEEEEEESSSCCEEEEEE-TTEECCSSSSEEEEEETTEEEEEESSCCGGGCEEEEEEE
T ss_pred             CCCEEEcc--ccceEecCCCcEEEEEEEEcCCCCEEEEEE-CCEECcCCCcEEEEEcCCEEEEEEecCCcccCEEEEEEE
Confidence            46666554  356778999999999999999999999999 66554432210          0                 


Q ss_pred             -----------------CCeEEc-CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEE
Q psy15734        175 -----------------PPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM  236 (314)
Q Consensus       175 -----------------~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s  236 (314)
                                       +|.+.. ......+.+|+.+.|.|.+.|.|.+.+.|++++ ..+.....+.......    ..
T Consensus        81 ~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v~W~~~~-~~~~~~~~~~~~~~~~----~~  155 (284)
T 2rik_A           81 SNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKVLWYKDE-TEIQESSKFRMSFVES----VA  155 (284)
T ss_dssp             EETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEEEEEETT-EECCCSSSEEEEEETT----EE
T ss_pred             EECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEEEEEECC-EECcCCCcEEEEEcCC----EE
Confidence                             454443 334556889999999999999999999999974 4444444444433222    34


Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeE--EEEccccccEeEEEEEeeccCCCccceE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQ--IRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~--~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|.|.++..+|+|.|+|.|.|..|.....+.|.|..+|.-...  ...+..++...+.|.+.+.|.|.+.|..
T Consensus       156 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~  228 (284)
T 2rik_A          156 VLEMYNLSVEDSGDYTCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQVSWHK  228 (284)
T ss_dssp             EEEECSCCGGGCEEEEEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEEEEEE
T ss_pred             EEEECCCCcccCEEEEEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEEEEEE
Confidence            8999999999999999999999999989999988876422111  1233455566799999999999999953

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.86  E-value=2.6e-21  Score=153.36  Aligned_cols=137  Identities=18%  Similarity=0.309  Sum_probs=88.4

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCce----eEEEeeeeeeecCcCEE----------EEeCCceeEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQ----TILSIHHKVVTQNKRVS----------ITFNDHRSWFL   89 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~----~~~~~~~~~~~~~~~~~----------~~~~~~~~~~L   89 (314)
                      +..+..+.+.+|+++.|.|.+.+.+. +.+.|++++..    .+............++.          +..+    +.|
T Consensus         4 v~~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~----~~L   79 (231)
T 2pet_A            4 LSVPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQ----GRL   79 (231)
T ss_dssp             CCCCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTT----CCE
T ss_pred             ccCCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCC----ceE
Confidence            34567889999999999999998874 89999986543    22110000000011221          2221    259


Q ss_pred             EEeeecCCCCeEEEEEEecC--CCcceeEEEEEEeCCceee-ecCcceeEEecCceE-EEEEEe-cccCCCceEEEcCCC
Q psy15734         90 HLRDVQETDRGWYMCQINTV--PMTSQKGYLQVVVPPRILL-DRTSTDVVVREGTEV-TLECSA-VGYPEPYVAWRREDG  164 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~--~~~~~~~~l~v~~~p~~~~-~~~~~~~~~~~g~~~-~l~C~~-~~~p~p~~~W~~~~~  164 (314)
                      .|.+++.+|+|.|+|.+.+.  +.....+.|.|..+|.... ...+....+.+|+.+ .|.|.+ .+.|.|.+.|++ ++
T Consensus        80 ~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~~-~~  158 (231)
T 2pet_A           80 VLAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWYR-NG  158 (231)
T ss_dssp             EESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEEE-TT
T ss_pred             EEcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEEE-CC
Confidence            99999999999999999664  4445666788887764322 111233445567766 888887 677777888887 44


Q ss_pred             ce
Q psy15734        165 KA  166 (314)
Q Consensus       165 ~~  166 (314)
                      ..
T Consensus       159 ~~  160 (231)
T 2pet_A          159 QR  160 (231)
T ss_dssp             EE
T ss_pred             cc
Confidence            43

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.86  E-value=7.6e-21  Score=153.03  Aligned_cols=189  Identities=16%  Similarity=0.238  Sum_probs=114.8

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCC-----ceEEEEEEcC-ceeEE--Eeee--eeeecCcCEEEEeCCceeEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLR-----EYKVAWVKMI-TQTIL--SIHH--KVVTQNKRVSITFNDHRSWFL   89 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~v~W~~~~-~~~~~--~~~~--~~~~~~~~~~~~~~~~~~~~L   89 (314)
                      .+|.+...+..+.+.+|++++|.|.+.+.+     .+.+.|+|.+ +..+.  ....  .......|+.+... ...++|
T Consensus        37 ~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L  115 (254)
T 2c1o_A           37 RELVMTQSPLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSPKRLIYLVSKLDSGDPDRFTGSGS-GTDFTL  115 (254)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEE
T ss_pred             eceeEEeCCceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCceEEEEeccccCCCccceEEEecC-CCEEEE
Confidence            367777778899999999999999998876     3899999854 22111  1000  00111356666542 234489


Q ss_pred             EEeeecCCCCeEEEEEEecCCCc--ceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcC
Q psy15734         90 HLRDVQETDRGWYMCQINTVPMT--SQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRRE  162 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~  162 (314)
                      .|.+++.+|+|.|+|.+.+....  .....|.|..   +|.+.....  ......|+.++|.|.+.+. |+ +.+.|++ 
T Consensus       116 ~I~~v~~~D~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~--~~~~~~g~~v~l~C~~~g~~p~~~~v~W~k-  192 (254)
T 2c1o_A          116 KISRVEAEDLGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKI-  192 (254)
T ss_dssp             EESSCCGGGCSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCCEEEEEE-
T ss_pred             EECcCCcccCEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecC--ChhhccCCcEEEEEEEecccCCCcEEEEEE-
Confidence            99999999999999999764321  1223455543   344433221  1112245677777777663 33 2466776 


Q ss_pred             CCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeEee-CCeeeEEEEE
Q psy15734        163 DGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSRLI-NGYSCHMTLK  239 (314)
Q Consensus       163 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~~~-~~~~~~s~L~  239 (314)
                      ++..+.                                                  ..  ......... +.|...+.|.
T Consensus       193 ~g~~l~--------------------------------------------------~~~~~~~~~~~~~~g~~~~~~~L~  222 (254)
T 2c1o_A          193 DGSERQ--------------------------------------------------NGVLNSWTDQDSKDSTYSMSSTLT  222 (254)
T ss_dssp             SSSEEC--------------------------------------------------TTEEEEECCCCTTTCCEEEEEEEE
T ss_pred             CCCccc--------------------------------------------------CcceeccccccCCCCcEEEEEEEE
Confidence            433321                                                  11  000000011 1234456999


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCc
Q psy15734        240 IRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      |.++..+|+|.|+|.|.|.....
T Consensus       223 i~~~~~~d~G~Y~C~a~n~~~~~  245 (254)
T 2c1o_A          223 LTKDEYERHNSYTCEATHKTSTS  245 (254)
T ss_dssp             EEHHHHHTCCEEEEEEECTTCSS
T ss_pred             eccccccCCCeEEEEEEcCCCCC
Confidence            99999999999999999987654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.86  E-value=7.5e-20  Score=149.52  Aligned_cols=206  Identities=16%  Similarity=0.224  Sum_probs=118.0

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeE---EEee------eeeeecCcCEEEEeC-CceeEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTI---LSIH------HKVVTQNKRVSITFN-DHRSWFLH   90 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~---~~~~------~~~~~~~~~~~~~~~-~~~~~~L~   90 (314)
                      ++..|..+.+.+|++++|.|.+.+.+  .+.+.|+|.+. ..+   ....      ........|+.+..+ ....++|.
T Consensus        29 ~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~  108 (282)
T 1qok_A           29 KLQQSGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSSNTAYLQ  108 (282)
T ss_dssp             EEEECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEE
T ss_pred             EEECCCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCCCeEEEE
Confidence            34556688999999999999998764  57999999642 111   1100      000112457776653 22346899


Q ss_pred             EeeecCCCCeEEEEEEecCCC------cceeEEEEEEeCCc-------------eeeecCcceeEEecCceEEEEEEecc
Q psy15734         91 LRDVQETDRGWYMCQINTVPM------TSQKGYLQVVVPPR-------------ILLDRTSTDVVVREGTEVTLECSAVG  151 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~~------~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~  151 (314)
                      |.+++.+|+|.|+|.+.+...      ......|.|..+|.             ......+....+.+|++++|.|.+.+
T Consensus       109 I~~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  188 (282)
T 1qok_A          109 LSSLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASS  188 (282)
T ss_dssp             ECSCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESS
T ss_pred             ECcCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecC
Confidence            999999999999999976532      11234677765431             11111133455667777777777776


Q ss_pred             cCCCceEEEcCC-CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC
Q psy15734        152 YPEPYVAWRRED-GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN  230 (314)
Q Consensus       152 ~p~p~~~W~~~~-~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~  230 (314)
                      .| +.+.|++.. +..+                                     ..+.+.. .+.......++..... .
T Consensus       189 ~~-~~v~W~k~~~g~~~-------------------------------------~~~~~~~-~~~~~~~~~r~~~~~~-~  228 (282)
T 1qok_A          189 SV-SYMHWFQQKPGTSP-------------------------------------KLWIYST-SNLASGVPARFSGSGS-G  228 (282)
T ss_dssp             CC-SCCEEEEECTTSCC-------------------------------------EEEEETT-TEECTTCCTTEEEEEE-T
T ss_pred             CC-ceEEEEEECCCCCc-------------------------------------EEEEEEe-cCCCCcccCCeEEecC-C
Confidence            66 677777621 1110                                     0000100 0000001223322211 1


Q ss_pred             CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEe
Q psy15734        231 GYSCHMTLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNL  272 (314)
Q Consensus       231 ~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~  272 (314)
                         ...+|.|.+++.+|+|.|+|.|.|..+.. .....|.|..
T Consensus       229 ---~~~~L~I~~v~~~DsG~Y~C~a~~~~~~~fg~gt~l~V~~  268 (282)
T 1qok_A          229 ---TSYSLTISRMEAEDAATYYCQQRSSYPLTFGAGTKLELKR  268 (282)
T ss_dssp             ---TEEEEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC-
T ss_pred             ---CEEEEEEccCChhHCEEEEEEEeeCCCceEeCCEEEEEec
Confidence               13489999999999999999999854322 2334555543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.86  E-value=3e-20  Score=151.44  Aligned_cols=140  Identities=18%  Similarity=0.269  Sum_probs=88.1

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCce----eEEEeeee-eeecCcCEEEEeCCceeEEEEEeee
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQ----TILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+..    .+...... ......|+.+... ...++|.|.++
T Consensus        11 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v   89 (276)
T 3auv_A           11 GDIQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSGS-GTDFTLTISSL   89 (276)
T ss_dssp             -CCCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESSC
T ss_pred             cceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEecc-CCeEEEEEccC
Confidence            456677788899999999999999998888889999996431    11111000 0112456666542 23458999999


Q ss_pred             cCCCCeEEEEEEecCCC--cceeEEEEEEeCCc-------------eeeecCcceeEEecCceEEEEEEecccC--CCce
Q psy15734         95 QETDRGWYMCQINTVPM--TSQKGYLQVVVPPR-------------ILLDRTSTDVVVREGTEVTLECSAVGYP--EPYV  157 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~  157 (314)
                      +.+|+|.|.|.+.+...  ......|.|..+|.             +.... +....+.+|+.++|.|.+.+.+  .+.+
T Consensus        90 ~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~-p~~~~v~~G~~v~L~C~~~g~~~~~~~v  168 (276)
T 3auv_A           90 QPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVE-SGGGLVQPGGSLRLSCAASGFTISDYWI  168 (276)
T ss_dssp             CGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEE-ECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             ChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEEC-CCceEecCCCeEEEEEEecCccCCCCEE
Confidence            99999999999976422  22334566655432             11111 2345566777777777776654  3667


Q ss_pred             EEEc
Q psy15734        158 AWRR  161 (314)
Q Consensus       158 ~W~~  161 (314)
                      .|++
T Consensus       169 ~W~k  172 (276)
T 3auv_A          169 HWVR  172 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            7776

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.86  E-value=1.8e-20  Score=144.37  Aligned_cols=130  Identities=19%  Similarity=0.242  Sum_probs=75.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeee------eee----cCcCEEEEeCCceeEEEEEeee
Q psy15734         26 EPVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHK------VVT----QNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~------~~~----~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      ..+..+.+.+|++++|.|.+.+ .+.+.+.|++++ ..+......      ...    ..+|+.+..    +++|.|.++
T Consensus         3 ~~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~----~~sL~I~~v   77 (193)
T 2if7_A            3 LTPLMVNGILGESVTLPLEFPAGEKVNFITWLFNE-TSLAFIVPHETKSPEIHVTNPKQGKRLNFTQ----SYSLQLSNL   77 (193)
T ss_dssp             CCCEEEEEETTSCEEECCCCCCCSCCCEEEEEETT-EEEEEEECCSSSCCEEEECCHHHHTTEEECT----TCCEEECSC
T ss_pred             CCCeEEEEEecCeEEEeccCCCcccccEEEEEECC-EEEEEEecccCCCCceeecCccccccEEECC----CeEEEECCC
Confidence            3567889999999999999975 445799999954 333211100      000    113555542    347999999


Q ss_pred             cCCCCeEEEEEEecCCC-cceeEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEeccc-CCCceEEEc
Q psy15734         95 QETDRGWYMCQINTVPM-TSQKGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGY-PEPYVAWRR  161 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~-~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-p~p~~~W~~  161 (314)
                      +.+|+|.|.|.+.+... ....+.|.|..++......... .....|. .+.|.|.+.+. |.|.+.|++
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~-~~~~~g~~~v~L~C~~~g~~p~p~i~W~~  146 (193)
T 2if7_A           78 KMEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHS-QLFQNMTCELHLTCSVEDADDNVSFRWEA  146 (193)
T ss_dssp             CGGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECC-C---CSSEEEEEEEEEESCCTTCEEEEEE
T ss_pred             CcccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCc-eeecCCCceEEEEEEEecCCCceEEEEEe
Confidence            99999999999976532 3445667776654322111000 1112233 45555555553 344555555

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.86  E-value=3.7e-20  Score=148.62  Aligned_cols=138  Identities=16%  Similarity=0.296  Sum_probs=87.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEe-eeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSI-HHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      .+.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+. .   .+... .........|+...... ..++|.|.+++
T Consensus         4 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~   82 (250)
T 3esu_F            4 DIVLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSGSG-TDYSLTISNLE   82 (250)
T ss_dssp             CCCEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCC
T ss_pred             ceeEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeCCC-CEEEEEEccCC
Confidence            3556677888999999999999999988888999999542 1   11110 00111123566554432 34589999999


Q ss_pred             CCCCeEEEEEEecCCC--cceeEEEEEEeCC-------------------ceeeecCcceeEEecCceEEEEEEecccC-
Q psy15734         96 ETDRGWYMCQINTVPM--TSQKGYLQVVVPP-------------------RILLDRTSTDVVVREGTEVTLECSAVGYP-  153 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p-------------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-  153 (314)
                      .+|+|.|.|.+.+...  ......|.|..++                   .....  +....+.+|+.++|.|.+.+.+ 
T Consensus        83 ~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~v~~G~~v~L~C~~~~~~~  160 (250)
T 3esu_F           83 QEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQ--SGPELVKPGASVKISCKDSGYAF  160 (250)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEE--CCCEEECTTCCEEEEEECCSTTG
T ss_pred             hhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEec--CCceEEcCCceEEEEEEecCCcc
Confidence            9999999999976422  2233456665431                   11111  2345566777777777776654 


Q ss_pred             -CCceEEEc
Q psy15734        154 -EPYVAWRR  161 (314)
Q Consensus       154 -~p~~~W~~  161 (314)
                       .+.+.|++
T Consensus       161 ~~~~v~W~k  169 (250)
T 3esu_F          161 SSSWMNWVK  169 (250)
T ss_dssp             GGSEEEEEE
T ss_pred             cCCEEEEEE
Confidence             56777776

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.86  E-value=1.4e-20  Score=147.31  Aligned_cols=182  Identities=14%  Similarity=0.161  Sum_probs=110.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC-------CceEEEEEEcCce----eEEEeee----eeeecCcCEEEEeCC-ceeEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENL-------REYKVAWVKMITQ----TILSIHH----KVVTQNKRVSITFND-HRSWFL   89 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~-------~~~~v~W~~~~~~----~~~~~~~----~~~~~~~~~~~~~~~-~~~~~L   89 (314)
                      ..+..+.+.+|++++|.|.+.+.       +.+.+.|+|.+..    .+.....    ......+|+.+..+. ...++|
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL   84 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRLLGDVQKKNCSL   84 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEECSCGGGTBCCE
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEEeccCCCCeEEE
Confidence            44678899999999999999753       5689999996532    1111100    001123566665431 234579


Q ss_pred             EEeeecCCCCeEEEEEEecCCCc-----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc----CCCceEEE
Q psy15734         90 HLRDVQETDRGWYMCQINTVPMT-----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY----PEPYVAWR  160 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~p~~~W~  160 (314)
                      .|.+++.+|+|.|.|.+.+....     ...+.|.|..++.......+.  .+.+|+.++|.|.+.+.    |.|.+.|+
T Consensus        85 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~--~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           85 SIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLE--PLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             EECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--C--CCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             EEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCc--cccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            99999999999999999765311     235667777643211111111  14567777777777653    56667777


Q ss_pred             cCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734        161 REDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      + ++                                                 .... . ...    ...     +.|.|
T Consensus       163 ~-~~-------------------------------------------------~~~~-~-~~~----~~~-----~~L~i  181 (214)
T 2zg1_A          163 G-NA-------------------------------------------------LSPL-D-PET----TRS-----SELTL  181 (214)
T ss_dssp             S-ST-------------------------------------------------TSSS-C-SSC----CCS-----SEEEE
T ss_pred             C-CC-------------------------------------------------CccC-C-CCc----eeE-----EEEEE
Confidence            6 22                                                 1110 0 000    111     28999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCc--eeEEEEEE
Q psy15734        241 RSILSHQFGSYRCVAVNALGET--DGFIKVYV  270 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V  270 (314)
                      ..+..+|+|.|+|.|.|..+..  ++.+.|.|
T Consensus       182 ~~~~~~~~g~Y~C~a~n~~~~~~~~~~v~l~V  213 (214)
T 2zg1_A          182 TPRPEDHGTNLTCQMKRQGAQVTTERTVQLNV  213 (214)
T ss_dssp             CCCTTCCSCEEEEEEECC----CCEEEEECCC
T ss_pred             ecccHHcCcEEEEEEEeCCCCcceEEEEEEEe
Confidence            9999999999999999986544  45555443

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.86  E-value=1e-20  Score=152.09  Aligned_cols=189  Identities=17%  Similarity=0.262  Sum_probs=114.1

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCC-----ceEEEEEEcCc-eeE--EEee--eeeeecCcCEEEEeCCceeEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLR-----EYKVAWVKMIT-QTI--LSIH--HKVVTQNKRVSITFNDHRSWFL   89 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~v~W~~~~~-~~~--~~~~--~~~~~~~~~~~~~~~~~~~~~L   89 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+     .+.+.|+|.+. ..+  ....  ........|+.+... ...++|
T Consensus        33 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L  111 (252)
T 3bkj_L           33 SDVLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSGS-GTDFTL  111 (252)
T ss_dssp             -CCCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEE
T ss_pred             cccEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEcc-CCEEEE
Confidence            345666778889999999999999998876     58999999642 111  1100  000111356666542 234589


Q ss_pred             EEeeecCCCCeEEEEEEecCCCc--ceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcC
Q psy15734         90 HLRDVQETDRGWYMCQINTVPMT--SQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRRE  162 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~  162 (314)
                      .|.+++.+|+|.|.|.+.+....  .....|.|..   +|.+.....  ...+.+|+.++|.|.+.+. |.+ .+.|++ 
T Consensus       112 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-  188 (252)
T 3bkj_L          112 RISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKI-  188 (252)
T ss_dssp             EESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECC--CHHHHHHTEEEEEEEEEEEBSSCCEEEEEE-
T ss_pred             EECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCC--ChhhcCCCcEEEEEEEeeEeCCCcEEEEEE-
Confidence            99999999999999999654221  1223455543   344433221  1112356677777777663 333 567776 


Q ss_pred             CCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeE-eeCCeeeEEEEE
Q psy15734        163 DGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSR-LINGYSCHMTLK  239 (314)
Q Consensus       163 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~L~  239 (314)
                      ++..+.                                                  ..  ....... .++.|...+.|.
T Consensus       189 ~g~~~~--------------------------------------------------~~~~~~~~~~~~~~g~~~~~s~L~  218 (252)
T 3bkj_L          189 DGSERQ--------------------------------------------------NGVLNSWTDQDSKDSTYSMSSTLT  218 (252)
T ss_dssp             TTEEEC--------------------------------------------------SSEEEEECCCCTTTCCEEEEEEEE
T ss_pred             CCeecC--------------------------------------------------CCeeeecCcccCCCCCEEEEEEEE
Confidence            333221                                                  10  0000000 112244556899


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCc
Q psy15734        240 IRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      |.++..+|+|.|+|.|.|.....
T Consensus       219 i~~~~~~d~g~Y~C~a~n~~~~~  241 (252)
T 3bkj_L          219 LTKDEYERHNSYTCEATHKTSTS  241 (252)
T ss_dssp             EEHHHHHHCCEEEEEEECTTCSS
T ss_pred             EcchhccCCCeEEEEEEeCCCCC
Confidence            99999999999999999987654

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.86  E-value=4.7e-20  Score=147.28  Aligned_cols=138  Identities=17%  Similarity=0.251  Sum_probs=86.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      +.+...+..+.+.+|++++|.|.+.+.+.+.+.|+|... .   .+..... .......|+.+... ...++|.|.+++.
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~   80 (242)
T 2znx_A            2 IVLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSGS-GTDFTLSINSVET   80 (242)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEEEESSCCG
T ss_pred             CcEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEecC-CCEEEEEECCCCh
Confidence            345667888999999999999999888888999999642 1   1111000 00012457766542 2345899999999


Q ss_pred             CCCeEEEEEEecCCCc--ceeEEEEEEeCCc------------eeeecCcceeEEecCceEEEEEEecccC--CCceEEE
Q psy15734         97 TDRGWYMCQINTVPMT--SQKGYLQVVVPPR------------ILLDRTSTDVVVREGTEVTLECSAVGYP--EPYVAWR  160 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~------------~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~~W~  160 (314)
                      +|+|.|.|.+.+....  .....|.|..+|.            +.... +....+.+|++++|.|.+.+.|  .+.+.|+
T Consensus        81 ~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~  159 (242)
T 2znx_A           81 EDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQE-SGPSLVKPSQTLSLTCSVTGDSITSDYXSXI  159 (242)
T ss_dssp             GGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-ECCSEECTTSCEEEEEEEESSCGGGSCEEEE
T ss_pred             HHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeec-CCcceecCCCeEEEEEEEEccccCCcceeeE
Confidence            9999999999765321  2334677766542            11111 1223466777777777776654  3567777


Q ss_pred             c
Q psy15734        161 R  161 (314)
Q Consensus       161 ~  161 (314)
                      +
T Consensus       160 k  160 (242)
T 2znx_A          160 R  160 (242)
T ss_dssp             E
T ss_pred             e
Confidence            6

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.86  E-value=6.3e-20  Score=147.89  Aligned_cols=139  Identities=19%  Similarity=0.288  Sum_probs=90.7

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-eeE--E-Eeee-----eeeecCcCEEEEeCC-ceeEEEE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVEN--LREYKVAWVKMIT-QTI--L-SIHH-----KVVTQNKRVSITFND-HRSWFLH   90 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~~~--~-~~~~-----~~~~~~~~~~~~~~~-~~~~~L~   90 (314)
                      ..+..+..+.+.+|++++|.|.+.+  .+.+.+.|+|... ...  . ....     .......|+.+..+. ...++|.
T Consensus        10 v~~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   89 (257)
T 3gkz_A           10 VQLQESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTSKNQVYLQ   89 (257)
T ss_dssp             EEEEEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGGGTEEEEE
T ss_pred             EEEECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecCCceEEEE
Confidence            3445566778999999999999977  3578999999532 111  1 1000     001123577766542 3456899


Q ss_pred             EeeecCCCCeEEEEEEecCC-----CcceeEEEEEEeC------------CceeeecCcceeEEecCceEEEEEEecccC
Q psy15734         91 LRDVQETDRGWYMCQINTVP-----MTSQKGYLQVVVP------------PRILLDRTSTDVVVREGTEVTLECSAVGYP  153 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~~------------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  153 (314)
                      |.+++.+|+|.|+|.+.+..     .......|.|..+            +.......+....+.+|++++|.|.+.+.+
T Consensus        90 I~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  169 (257)
T 3gkz_A           90 LKSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSV  169 (257)
T ss_dssp             ECSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCC
T ss_pred             ECCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCc
Confidence            99999999999999997641     1123345677654            112222234556788889999999888877


Q ss_pred             CC-ceEEEc
Q psy15734        154 EP-YVAWRR  161 (314)
Q Consensus       154 ~p-~~~W~~  161 (314)
                      .+ .+.|++
T Consensus       170 ~~~~v~W~k  178 (257)
T 3gkz_A          170 SSSHLYWYQ  178 (257)
T ss_dssp             CGGGEEEEE
T ss_pred             cceEEEEEE
Confidence            76 888987

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.86  E-value=1.2e-20  Score=149.17  Aligned_cols=192  Identities=18%  Similarity=0.215  Sum_probs=109.2

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEE---Eee----eeee--ecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTIL---SIH----HKVV--TQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~---~~~----~~~~--~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..+.   ...    ....  ...+|+.+..+. ...++|.|.
T Consensus         5 ~qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   84 (227)
T 1mju_H            5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (227)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             cCCCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCCCeEEEEEC
Confidence            345678899999999999998765  6799999964 22211   110    0000  124677776542 345689999


Q ss_pred             eecCCCCeEEEEEEecCCC--cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCC
Q psy15734         93 DVQETDRGWYMCQINTVPM--TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDG  164 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~  164 (314)
                      +++.+|+|.|.|.+.+...  ......|.|..    +|.+.... + ...+..|+.++|.|.+.+. |.+ .+.|++   
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~---  159 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLA-P-VCGDTSGSSVTLGCLVKGYFPEPVTLTWNS---  159 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEEC-C-CC------CEEEEEEEEEEBSSCCEEEEGG---
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEec-C-CccccCCCcEEEEEEeecEeCCCeEEEEec---
Confidence            9999999999999975421  11223455543    22222211 0 1123345555555555543 433 455544   


Q ss_pred             ceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeee-ecCCceeeeEeeCCeeeEEEEEEeec
Q psy15734        165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-ITGDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       165 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                                                                     ++..+. .....  .. ..+.|...+.|.|.++
T Consensus       160 -----------------------------------------------~g~~~~~~~~~~--~~-~~g~~~~~s~L~i~~~  189 (227)
T 1mju_H          160 -----------------------------------------------GSLSSGVHTFPA--VL-QSDLYTLSSSVTVTSS  189 (227)
T ss_dssp             -----------------------------------------------GTBCTTEEECCC--EE-ETTEEEEEEEEEECTT
T ss_pred             -----------------------------------------------CCCcCCcEECCc--ee-cCCeEEEEEEEEEchh
Confidence                                                           322110 00110  00 1123445669999999


Q ss_pred             CCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        244 LSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      ..+| |.|+|.|.|..+.......+.+..+
T Consensus       190 ~~~~-g~Y~C~a~n~~~~~~~~~~~~~~~~  218 (227)
T 1mju_H          190 TWPS-QSITCNVAHPASSTKVDKKIEPRGP  218 (227)
T ss_dssp             TTTT-SCCEEEEEEGGGTEEEEEECCCCCC
T ss_pred             hcCC-CeEEEEEEECCCCcceEEEeCCCCC
Confidence            9888 9999999998766555555554444

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.86  E-value=2e-20  Score=146.81  Aligned_cols=184  Identities=15%  Similarity=0.194  Sum_probs=108.8

Q ss_pred             CcceEEEcCCcEEEEEEe-cCCC-ceEEEEEEcCc-eeEE--Eee--eeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         28 VANVTATVGKEALMACVV-ENLR-EYKVAWVKMIT-QTIL--SIH--HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~-~~~~-~~~v~W~~~~~-~~~~--~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      |..+.+.+|++++|.|.+ .+.+ .+.+.|+|.+. ..+.  ...  ........|+.+... ...++|.|.+++.+|+|
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G   85 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSKS-GTSATLGITGLQTGDEA   85 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEE-TTEEEEEECSCCGGGCE
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEecc-CCEEEEEECCCCcccCE
Confidence            567899999999999995 4432 57999999642 1111  100  000111346665542 23458999999999999


Q ss_pred             EEEEEEecCCC---cceeEEEEEE---eCCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCceeecCCe
Q psy15734        101 WYMCQINTVPM---TSQKGYLQVV---VPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKAINYNGE  172 (314)
Q Consensus       101 ~Y~C~~~~~~~---~~~~~~l~v~---~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~~~~~~~  172 (314)
                      .|.|.+.+...   ......|.|.   .+|.+......  .....|+.+.|.|.+.+. |.+ .+.|++ ++..+.    
T Consensus        86 ~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~--~~~~~g~~v~L~C~~~g~~P~~~~v~W~k-~g~~~~----  158 (216)
T 2xzc_L           86 DYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPS--DEQLKSGTASVVCLLNNFYPREAKVQWKV-DNALQS----  158 (216)
T ss_dssp             EEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCC--HHHHHTTEEEEEEEEEEEBSSCCEEEEEE-TTEECC----
T ss_pred             EEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCC--hhhccCCcEEEEEEEEeEcCCceEEEEEE-CCeecC----
Confidence            99999976543   1223355554   23444332211  112246677777777663 443 667776 333221    


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeE-eeCCeeeEEEEEEeecCCCCCe
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSR-LINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                                                                    ..  ....... .++.|...+.|.|.++..+|+|
T Consensus       159 ----------------------------------------------~~~~~~~~~~~~~~g~~~~~s~L~i~~~~~~d~g  192 (216)
T 2xzc_L          159 ----------------------------------------------GNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHK  192 (216)
T ss_dssp             ----------------------------------------------SSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCC
T ss_pred             ----------------------------------------------CCeeEecCcccCCCCCEEEEEEEEECHHHhCCCC
Confidence                                                          11  0000000 1122455669999999999999


Q ss_pred             EEEEEEeeCCCCceeE
Q psy15734        250 SYRCVAVNALGETDGF  265 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~  265 (314)
                      .|+|.|.|........
T Consensus       193 ~Y~C~a~n~~~~~~~~  208 (216)
T 2xzc_L          193 VYACEVTHQGLSSPVT  208 (216)
T ss_dssp             EEEEEEECTTCSSCEE
T ss_pred             cEEEEEEcCCCCCceE
Confidence            9999999987654433

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.85  E-value=1.5e-20  Score=150.54  Aligned_cols=190  Identities=14%  Similarity=0.263  Sum_probs=114.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEee--e-eeee---cCcCEEEEeCCceeEEEEE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIH--H-KVVT---QNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~--~-~~~~---~~~~~~~~~~~~~~~~L~i   91 (314)
                      +.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|...    ..+....  . ....   ...|+.+..+....++|.|
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~L~I   81 (246)
T 4dzb_B            2 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTLTV   81 (246)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEETTEEEEEE
T ss_pred             CccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCCCEEEEEE
Confidence            346667888999999999999999888889999998421    1111111  0 0011   1256766654344568999


Q ss_pred             eeecCCCCeEEEEEEecCCC-----cceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecccCCC--ceE
Q psy15734         92 RDVQETDRGWYMCQINTVPM-----TSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVGYPEP--YVA  158 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~-----~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p--~~~  158 (314)
                      .+++.+|+|.|+|.+.+...     ......|.|..      +|.+.... +....+..|+.+.|.|.+.+.|++  .+.
T Consensus        82 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~  160 (246)
T 4dzb_B           82 TSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELS  160 (246)
T ss_dssp             CSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             CCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeec-CCchhccCCCcEEEEEEEccCcCCceEEE
Confidence            99999999999999965321     11233455553      33332221 122223345666666666554332  556


Q ss_pred             EEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-------eeCC
Q psy15734        159 WRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-------LING  231 (314)
Q Consensus       159 W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-------~~~~  231 (314)
                      |++ ++..+.                                                  .........       .++.
T Consensus       161 W~k-~g~~l~--------------------------------------------------~~~~~~~~~~~~~~~~~~g~  189 (246)
T 4dzb_B          161 WWV-NGKEVH--------------------------------------------------SGVCTDPQPLKEQPALNDSR  189 (246)
T ss_dssp             EEE-TTEEEC--------------------------------------------------TTEEECSSCEESSTTSTTCC
T ss_pred             EEE-CCEECC--------------------------------------------------CCcccccccccccccCCCCC
Confidence            665 333321                                                  111000000       1222


Q ss_pred             eeeEEEEEEeecCCCC-CeEEEEEEeeCCCCce
Q psy15734        232 YSCHMTLKIRSILSHQ-FGSYRCVAVNALGETD  263 (314)
Q Consensus       232 ~~~~s~L~i~~~~~~d-~G~Y~C~a~n~~g~~~  263 (314)
                      |...+.|.|.....+| .|.|+|.|.|......
T Consensus       190 ~~~~s~l~i~~~~~~d~~g~YtC~v~~~~~~~~  222 (246)
T 4dzb_B          190 YALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  222 (246)
T ss_dssp             EEEEEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEEEEECHHHhccCCCeEEEEEEecCCCCc
Confidence            5555689999999888 9999999999876554

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.85  E-value=5.6e-20  Score=142.60  Aligned_cols=129  Identities=12%  Similarity=0.062  Sum_probs=83.4

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...+|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++...... ..     ..+   .......+.|.|.+++.+
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~-~~-----~~~---~~~~~~~~~l~I~~v~~~   73 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTL-RL-----IGE---HHDGVSKANFSISRMTQD   73 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEE-EE-----ECE---EETTEEEEEEEESSCCGG
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcc-ee-----eee---cCCCCceEEEEeccCCcc
Confidence            345677776665 77899999999999975 66799999965432111 00     000   011122347999999999


Q ss_pred             CCeEEEEEEecCC------CcceeEEEEEEeC---CceeeecCcceeEEecCceEEEEEEecccCCCceEEEc
Q psy15734         98 DRGWYMCQINTVP------MTSQKGYLQVVVP---PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR  161 (314)
Q Consensus        98 d~G~Y~C~~~~~~------~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~  161 (314)
                      |+|.|+|.+.+..      ..+..+.|.|...   |.+...+  . ..+.+|+.++|.|.+.+ +.+.+.|++
T Consensus        74 D~G~Y~C~a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p--~-~~v~~G~~v~L~C~~~~-~~~~~~w~k  142 (201)
T 1nkr_A           74 LAGTYRCYGSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQP--G-PTVLAGENVTLSCSSRS-SYDMYHLSR  142 (201)
T ss_dssp             GCEEEEEEEEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEES--C-SEECTTCEEEEEEEESS-CCSEEEEEE
T ss_pred             cCeEEEEeEecCCCCccccCCCCCEEEEeeccCCCCceecCC--C-CccCCCCeEEEEEeCCC-CCceEEEEE
Confidence            9999999996431      2234556777653   4444332  1 35677888888887765 456677777

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.85  E-value=1.4e-20  Score=147.10  Aligned_cols=184  Identities=17%  Similarity=0.230  Sum_probs=106.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeE---EEeee-----eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTI---LSIHH-----KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~---~~~~~-----~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..+   .....     ......+|+.+..+. ...++|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~v   85 (210)
T 3d9a_H            6 ESGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSKNQYYLDLNSV   85 (210)
T ss_dssp             EESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCCCEEEEEECCC
Confidence            35567899999999999998764  4799999863 2211   11000     000124577766532 23458999999


Q ss_pred             cCCCCeEEEEEEecCCCcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCceee
Q psy15734         95 QETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKAIN  168 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~~~  168 (314)
                      +.+|+|.|.|.+.+.........|.|..    +|.+....  ....+..|+.+.|.|.+.+. |.| .+.|++       
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~-------  156 (210)
T 3d9a_H           86 TTEDTATYYCANWDGDYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-------  156 (210)
T ss_dssp             CGGGCEEEEEEETTSSCBCCCEEEEECCCCCBCCEEEEEC--CTTSCCCSSEEEEEEEEEEEBSSCCEEEEGG-------
T ss_pred             CcccCEEEEEEEecCcccccceEEEeccCCCCCCEEEEec--CCcccccCCcEEEEEEEeeEecCCcEEEEee-------
Confidence            9999999999996542122234555542    22222221  01113345555555555544 444 555554       


Q ss_pred             cCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        169 YNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                                                 ++......... ... ..+.|...+.|.|.++..+| 
T Consensus       157 -------------------------------------------~~~~~~~~~~~-~~~-~~~~~~~~s~L~i~~~~~~~-  190 (210)
T 3d9a_H          157 -------------------------------------------GSLSSGVHTFP-AVL-QSDLYTLSSSVTVPSSTWPS-  190 (210)
T ss_dssp             -------------------------------------------GTBCTTEEECC-CEE-ETTEEEEEEEEEEEGGGTTT-
T ss_pred             -------------------------------------------CCcccceEEcC-Ccc-CCCcEEEEEEEEEcHHHcCC-
Confidence                                                       32211000000 000 11224445689999998877 


Q ss_pred             eEEEEEEeeCCCCceeE
Q psy15734        249 GSYRCVAVNALGETDGF  265 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~  265 (314)
                      |.|+|.|.|..|.....
T Consensus       191 g~Y~C~a~n~~~~~~~~  207 (210)
T 3d9a_H          191 ETVTCNVAHPASSTKVD  207 (210)
T ss_dssp             SCCEEEEEEGGGTEEEE
T ss_pred             CcEEEEEEeCCCCcccc
Confidence            99999999998876544

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.85  E-value=6.9e-20  Score=144.45  Aligned_cols=187  Identities=14%  Similarity=0.253  Sum_probs=108.6

Q ss_pred             CcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-ee---EEEeee------eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QT---ILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~---~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+|... ..   +.....      ......+|+.+..+. ...++|.|.++
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (223)
T 1dee_B            7 SGGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNSKNTLYLQMNSL   86 (223)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCCCCEEEEEECCC
Confidence            3578899999999999998754  47899999642 21   111100      001124577776542 34568999999


Q ss_pred             cCCCCeEEEEEEecCCC-------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEc
Q psy15734         95 QETDRGWYMCQINTVPM-------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRR  161 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~  161 (314)
                      +.+|+|.|.|.+.+...       ......|.|..    +|.+.... + ...+.+|+.+.|.|.+.+. |.| .+.|++
T Consensus        87 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  164 (223)
T 1dee_B           87 RAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLV-S-CENSNPSSTVAVGCLAQDFLPDSITFSWKY  164 (223)
T ss_dssp             CGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEE-C-TTCCCSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             CHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEec-C-CcccCCCCcEEEEEEEEEEeCCCeEEEeEc
Confidence            99999999999976431       11223455542    22222211 0 1112345555555555544 444 555555


Q ss_pred             CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe
Q psy15734        162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      .++..                                                  +.....+......+.|...+.|.|.
T Consensus       165 ~~g~~--------------------------------------------------l~~~~~~~~~~~~~~~~~~s~L~i~  194 (223)
T 1dee_B          165 KNNSD--------------------------------------------------ISSTRGFPSVLRGGKYAATSQVLLP  194 (223)
T ss_dssp             TTSCB--------------------------------------------------CSCEEECCCEEETTEEEEEEEEEEE
T ss_pred             cCCCc--------------------------------------------------cceeEECCccccCCeEEEEEEEEEc
Confidence            22221                                                  1110000000112235556789998


Q ss_pred             ecCC--CCCeEEEEEEeeCCCCceeEE
Q psy15734        242 SILS--HQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       242 ~~~~--~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ....  +|.|.|+|.|.|..+.....+
T Consensus       195 ~~~~~~~d~g~y~C~v~n~~~~~~~~~  221 (223)
T 1dee_B          195 SKDVAQGTNEHVVCKVQHPNGNKEKDV  221 (223)
T ss_dssp             CTTTTSTTCCEEEEEEECTTCCEEEEE
T ss_pred             HHHhccCCCCEEEEEEEeCCCCCcccc
Confidence            8876  889999999999998766554

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.85  E-value=1.7e-20  Score=147.64  Aligned_cols=185  Identities=16%  Similarity=0.227  Sum_probs=107.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-cee---EEEeee--------eeeecCcCEEEEeCC-ceeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQT---ILSIHH--------KVVTQNKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~---~~~~~~--------~~~~~~~~~~~~~~~-~~~~~L~i   91 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..   +.....        ......+|+.+..+. ...++|.|
T Consensus         6 ~p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   85 (220)
T 1pz5_B            6 ESGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDSKSSVYLQM   85 (220)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCCCCeEEEEE
Confidence            35678899999999999998755  6899999964 221   111100        000113577766532 23458999


Q ss_pred             eeecCCCCeEEEEEEecCCCc--c--eeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCC
Q psy15734         92 RDVQETDRGWYMCQINTVPMT--S--QKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRRED  163 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~~--~--~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~  163 (314)
                      .+++.+|+|.|.|.+.+....  .  ....|.|..    +|.+....  ....+.+                        
T Consensus        86 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~------------------------  139 (220)
T 1pz5_B           86 NNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLV--PGCSDTS------------------------  139 (220)
T ss_dssp             CSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC--CCSCCSC------------------------
T ss_pred             ccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcc--cccccCC------------------------
Confidence            999999999999999765311  1  234455542    22222211  0111233                        


Q ss_pred             CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeec-CCc-eeEEecCCCeee-ecCCceeeeEeeCCeeeEEEEEE
Q psy15734        164 GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAF-PAS-LNYWTNEKGDMI-ITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       164 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                                                |+.+.|.|.+.|. |.| .+.|++++.... ......   ...+.|...+.|.|
T Consensus       140 --------------------------g~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~---~~~~~~~~~s~L~i  190 (220)
T 1pz5_B          140 --------------------------GSSVTLGCLVKGYFPEPVTVKWNYGALSSGVRTVSSV---LQSGFYSLSSLVTV  190 (220)
T ss_dssp             --------------------------SSSEEEEEEEEEEBSSCCEEEEGGGTCCTTEEECCCE---EETTEEEEEEEEEE
T ss_pred             --------------------------CCcEEEEEEEEEEeCCCeEEEEecCCcccceEEcCCc---ccCCeEEEEEEEEE
Confidence                                      4445555555443 444 455554332100 000000   01122444569999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        241 RSILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      .++..+| |.|+|.|.|..|..++.+.
T Consensus       191 ~~~~~~~-g~Y~C~a~n~~~~~~~~~~  216 (220)
T 1pz5_B          191 PSSTWPS-QTVICNVAHPASKVDLIKE  216 (220)
T ss_dssp             CGGGTTT-SCCEEEEEEGGGTEEEEEE
T ss_pred             cchhcCC-ceEEEEEEECCccEeeeec
Confidence            9988866 9999999999997666554

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.85  E-value=4.7e-20  Score=148.87  Aligned_cols=140  Identities=16%  Similarity=0.214  Sum_probs=79.3

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC---cee-EEEee--e--eeee---cCcCEEEEeCCceeEEEE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI---TQT-ILSIH--H--KVVT---QNKRVSITFNDHRSWFLH   90 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~---~~~-~~~~~--~--~~~~---~~~~~~~~~~~~~~~~L~   90 (314)
                      |.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|..   ... +....  .  ....   .+.+..........++|.
T Consensus         3 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L~   82 (259)
T 3omz_A            3 SNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRMI   82 (259)
T ss_dssp             --------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEEE
T ss_pred             cccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEEE
Confidence            56667788899999999999999988788899999942   111 11111  0  0000   012222222233445899


Q ss_pred             EeeecCCCCeEEEEEEecCCC----cceeEEEEEEeCC---------------ceeeecCcceeEEecCceEEEEEEecc
Q psy15734         91 LRDVQETDRGWYMCQINTVPM----TSQKGYLQVVVPP---------------RILLDRTSTDVVVREGTEVTLECSAVG  151 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~~p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~  151 (314)
                      |.+++.+|+|.|+|.+.+...    ......|.|..++               .......+....+.+|++++|.|.+.+
T Consensus        83 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~  162 (259)
T 3omz_A           83 LRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYET  162 (259)
T ss_dssp             ESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEEC
T ss_pred             ECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCC
Confidence            999999999999999976432    2233567776532               111122245567788888888887766


Q ss_pred             c-CCCceEEEc
Q psy15734        152 Y-PEPYVAWRR  161 (314)
Q Consensus       152 ~-p~p~~~W~~  161 (314)
                      . +.+.+.|++
T Consensus       163 ~~~~~~v~W~k  173 (259)
T 3omz_A          163 SWWSYYIFWYK  173 (259)
T ss_dssp             CCSSCEEEEEE
T ss_pred             ccCCceEEEee
Confidence            4 677888887

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.85  E-value=8e-20  Score=145.58  Aligned_cols=182  Identities=13%  Similarity=0.078  Sum_probs=116.8

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ...+|.|...+.. .+.+|++++|.|.+.+ +...+.|+|++ ..+...     ... .    ........|.|.+++.+
T Consensus         4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g-~~~~~~-----~~~-~----~~~~~~~~L~I~~v~~~   70 (242)
T 1p6f_A            4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEG-SLFAVD-----RPK-P----PERINKVKFYIPDMNSR   70 (242)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETT-EEEEEE-----CCS-S----CTTCCEEEEEECSCCGG
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECC-Cccccc-----ccc-c----cCCcceeEEEecCCCcc
Confidence            3467888777766 8999999999999975 45689999954 332210     000 0    01112347999999999


Q ss_pred             CCeEEEEEEecCC---CcceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCC
Q psy15734         98 DRGWYMCQINTVP---MTSQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNG  171 (314)
Q Consensus        98 d~G~Y~C~~~~~~---~~~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~  171 (314)
                      |+|.|+|.+.+..   ..+..+.|.|..   +|.+...+   ...+.+|++++|.|.+.+. .+.+.|++ ++..     
T Consensus        71 DsG~Y~C~~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p---~~~v~~G~~vtL~C~~~~~-~~~~~w~k-~g~~-----  140 (242)
T 1p6f_A           71 MAGQYSCIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHP---GPEVISGEKVTFYCRLDTA-TSMFLLLK-EGRS-----  140 (242)
T ss_dssp             GCEEEEEEEEETTEECCCCCCEEEEEECCSCCCEEEEES---CSEEETTCEEEEEEECTTS-CSEEEEEE-CSSS-----
T ss_pred             cCeEEEEEEecCCccccCCcceEEEeecccCCCceEccC---CCccCCCCcEEEEEecCCC-CCEEEEEE-CCCc-----
Confidence            9999999996531   234456677764   34444332   2356778888888877643 34677777 3221     


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                                                                  ...   ... ....     ...|.|.+++.+|+|.|
T Consensus       141 --------------------------------------------~~~---~~~-~~~~-----~~~l~I~~v~~~d~G~Y  167 (242)
T 1p6f_A          141 --------------------------------------------SHV---QRG-YGKV-----QAEFPLGPVTTAHRGTY  167 (242)
T ss_dssp             --------------------------------------------CEE---EEE-ECSS-----EEEEEEEECCGGGCEEE
T ss_pred             --------------------------------------------cCc---ccc-CCCc-----eEEEEeCCCccccCEEE
Confidence                                                        111   000 0001     23999999999999999


Q ss_pred             EEEEeeCC---CCceeEEEEEEEecCC
Q psy15734        252 RCVAVNAL---GETDGFIKVYVNLVDG  275 (314)
Q Consensus       252 ~C~a~n~~---g~~~~~~~l~V~~~~~  275 (314)
                      +|.|.|..   ...+..+.|.|.....
T Consensus       168 ~C~a~n~~~~~s~~S~~~~l~V~~~~~  194 (242)
T 1p6f_A          168 RCFGSYNNHAWSFPSEPVKLLVTGDIE  194 (242)
T ss_dssp             EEEEEEETTEECCCCCCEEEEEEC---
T ss_pred             EEEEECCCCcccCCCCCEEEEEeccCC
Confidence            99999864   3456678888887543

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.85  E-value=9.1e-20  Score=146.97  Aligned_cols=135  Identities=19%  Similarity=0.312  Sum_probs=84.1

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ce---eEEEeee-----eeeecCcCEEEEeC-CceeEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQ---TILSIHH-----KVVTQNKRVSITFN-DHRSWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~---~~~~~~~-----~~~~~~~~~~~~~~-~~~~~~L~i~~~   94 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +.   .+.....     .......|+.+..+ ....++|.|.++
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (257)
T 1f3r_B            6 ESGPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSL   85 (257)
T ss_dssp             EECCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETTTTEEEEEEESC
T ss_pred             CCCCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECCCCEEEEEECCC
Confidence            34456899999999999998764  6899999963 11   1111000     00112457777654 234568999999


Q ss_pred             cCCCCeEEEEEEecCCC-------c---ceeEEEEEEeCCc-------------eeeecCcceeEEecCceEEEEEEecc
Q psy15734         95 QETDRGWYMCQINTVPM-------T---SQKGYLQVVVPPR-------------ILLDRTSTDVVVREGTEVTLECSAVG  151 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~-------~---~~~~~l~v~~~p~-------------~~~~~~~~~~~~~~g~~~~l~C~~~~  151 (314)
                      +.+|+|.|+|.+.+...       .   .....|.|..++.             ......+....+.+|+.++|.|.+.+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  165 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ  165 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence            99999999999976521       1   1234566665431             11111123445667777777777766


Q ss_pred             cCCCceEEEc
Q psy15734        152 YPEPYVAWRR  161 (314)
Q Consensus       152 ~p~p~~~W~~  161 (314)
                      .|.+.+.|++
T Consensus       166 ~~~~~v~W~k  175 (257)
T 1f3r_B          166 NINNYLAWYQ  175 (257)
T ss_dssp             CCBTCEEEEE
T ss_pred             cCCCcEEEEE
Confidence            6666777776

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=99.85  E-value=2.1e-20  Score=154.48  Aligned_cols=178  Identities=24%  Similarity=0.370  Sum_probs=124.0

Q ss_pred             eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecC--------------------------CeeC-
Q psy15734        122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN--------------------------GELV-  174 (314)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~--------------------------~~~~-  174 (314)
                      .+|.+...  +.+..+.+|+.+.|.|.+.|.|.|.+.|++ ++..+...                          +.+. 
T Consensus         5 ~~P~~~~~--p~~~~v~~G~~v~l~C~~~g~p~~~i~W~k-~g~~i~~~~~~~~~~~~~~~~~L~i~~~~~~~D~G~Y~C   81 (304)
T 2yd9_A            5 EPPRFIKE--PKDQIGVSGGVASFVCQATGDPKPRVTWNK-KGKKVNSQRFETIEFDESAGAVLRIQPLRTPRDENVYEC   81 (304)
T ss_dssp             CCCEEEEC--CCCEEEETTSCEEEEEEEECSSCCEEEEC--------CTTEEEEEETTTTEEEEEECSCCTTTTCSEEEE
T ss_pred             cCCeeeec--CCceEecCCCeEEEEEEEEEeCCCeEEEEE-CCEECCCCceEEEEecCCCceEEEEecccccCCCeEEEE
Confidence            45666554  366788999999999999999999999998 44332111                          0000 


Q ss_pred             -------------------C-------CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe
Q psy15734        175 -------------------P-------PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL  228 (314)
Q Consensus       175 -------------------~-------p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~  228 (314)
                                         +       |.+...+....+..|+++.|.|.+.|.|.|.+.|++++...............
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~k~~~~~~~~~~~~~~~~~  161 (304)
T 2yd9_A           82 VAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEITWFKDFLPVDPSASNGRIKQL  161 (304)
T ss_dssp             EEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEEEEEETTEECCGGGGTTSEEEC
T ss_pred             EEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeEEEEECCEECcCCCCcceEEeC
Confidence                               1       66777777778899999999999999999999999975443332222333334


Q ss_pred             eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE-EEEEEEecCC-CeeEEE----EccccccEeEEEEEeeccCCC
Q psy15734        229 INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF-IKVYVNLVDG-DIFQIR----KMSRLHMGAYLCIASNGVVPS  302 (314)
Q Consensus       229 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~~~~-~~~~~~----~~~~~~~g~~~C~a~~~~~~~  302 (314)
                      .++     .|.|.++..+|+|.|+|.|.|..|..... ..|.|..... +.+...    .+..++...+.|.+.+.|.|.
T Consensus       162 ~~~-----~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~  236 (304)
T 2yd9_A          162 RSG-----ALQIESSEETDQGKYECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPY  236 (304)
T ss_dssp             TTS-----CEEECSCCGGGCEEEEEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCE
T ss_pred             CCe-----EEEEccCCcccCEEEEEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCE
Confidence            444     89999999999999999999999876533 5555543221 222221    234445567999999999999


Q ss_pred             ccceE
Q psy15734        303 VSHRI  307 (314)
Q Consensus       303 ~~w~v  307 (314)
                      +.|..
T Consensus       237 v~W~~  241 (304)
T 2yd9_A          237 VKWMQ  241 (304)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99963

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.85  E-value=8.1e-20  Score=143.76  Aligned_cols=186  Identities=16%  Similarity=0.244  Sum_probs=107.1

Q ss_pred             CcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-ee---EEEeee------eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QT---ILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~---~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      +..+.+.+|++++|.|.+.+.+  .+.+.|+|... ..   +.....      ......+|+.+..+. ...++|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   86 (220)
T 2fbj_H            7 SGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSKV   86 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECSC
T ss_pred             CCCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEeeCCCCEEEEEECCC
Confidence            4568899999999999998754  57899999642 21   111100      001124678777642 34568999999


Q ss_pred             cCCCCeEEEEEEecCCCc----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecC
Q psy15734         95 QETDRGWYMCQINTVPMT----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYN  170 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~  170 (314)
                      +.+|+|.|.|.+.+....    .....|.|...+.                           ..|.+.-..         
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~---------------------------~~P~v~~~~---------  130 (220)
T 2fbj_H           87 RSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESA---------------------------RNPTIYPLT---------  130 (220)
T ss_dssp             CGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCC---------------------------BCCEEEEEC---------
T ss_pred             ChhhCEEEEEEEeccccccceecCCEEEEecCCCC---------------------------CCCEEEEee---------
Confidence            999999999999764321    1223444442110                           011111110         


Q ss_pred             CeeCCCeEEcCCCcceeecCccEEEEEEEeec-CC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        171 GELVPPMLTIPNQLEGAFVSQTVELHCHTEAF-PA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       171 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                                   ...+..|+.+.|.|.+.+. |.  +.+.|++++..+...... .....++.|...+.|.|.+...+|
T Consensus       131 -------------~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~~~~~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~d  196 (220)
T 2fbj_H          131 -------------LPPALSSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITTVNFP-PALASGGRYTMSNQLTLPAVECPE  196 (220)
T ss_dssp             -------------CCSSSCCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEEEECC-CEECSSSCEEEEEEEEECGGGSCT
T ss_pred             -------------cccccCCCcEEEEEEEEeEECCCcEEEEEecCCEecceEecC-ceECCCCCEEEEEEEEECHHHcCC
Confidence                         0012344555555555544 43  455555543322110000 001112235556789999999999


Q ss_pred             CeEEEEEEeeCCCCce
Q psy15734        248 FGSYRCVAVNALGETD  263 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~  263 (314)
                      .|.|+|.|.|..+...
T Consensus       197 ~g~ytC~v~n~~~~~~  212 (220)
T 2fbj_H          197 GESVKCSVQHDSNPVQ  212 (220)
T ss_dssp             TCEEEEEEEETTSCCE
T ss_pred             CCeEEEEEEcCCCceE
Confidence            9999999999988654

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.85  E-value=2.3e-19  Score=145.18  Aligned_cols=140  Identities=19%  Similarity=0.308  Sum_probs=89.5

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCC------ceEEEEEEcC-cee---EEEeeee-eeecCcCEEEEeCCceeEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLR------EYKVAWVKMI-TQT---ILSIHHK-VVTQNKRVSITFNDHRSWF   88 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~------~~~v~W~~~~-~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~   88 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+      .+.+.|+|.+ +..   +...... ......|+.+... ...++
T Consensus         4 ~~~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~~-~~~~~   82 (264)
T 2gjj_A            4 ADIVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSGS-GTDFT   82 (264)
T ss_dssp             CCCCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEE
T ss_pred             cccceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEecC-CCEEE
Confidence            456777788899999999999999998876      6899999963 221   1111000 0012457766542 23458


Q ss_pred             EEEeeecCCCCeEEEEEEecCCC--cceeEEEEEEeCCc------------------eeeecCcceeEEecCceEEEEEE
Q psy15734         89 LHLRDVQETDRGWYMCQINTVPM--TSQKGYLQVVVPPR------------------ILLDRTSTDVVVREGTEVTLECS  148 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~------------------~~~~~~~~~~~~~~g~~~~l~C~  148 (314)
                      |.|.+++.+|+|.|.|.+.+...  ......|.|..+|.                  +.... +....+.+|++++|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           83 LTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQ-SGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEE-CCCEEECTTCCEEEEEE
T ss_pred             EEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeC-CCCEEEcCCCcEEEEEE
Confidence            99999999999999999976432  12335677776531                  21111 12235667777777777


Q ss_pred             ecccCC--CceEEEc
Q psy15734        149 AVGYPE--PYVAWRR  161 (314)
Q Consensus       149 ~~~~p~--p~~~W~~  161 (314)
                      +.+.+.  +.+.|++
T Consensus       162 ~~~~~~~~~~v~W~r  176 (264)
T 2gjj_A          162 ASGYSFTGYFINWVK  176 (264)
T ss_dssp             EESSCGGGSEEEEEE
T ss_pred             EeCCccCCeEEEEEE
Confidence            766543  5677776

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.85  E-value=9.7e-20  Score=145.23  Aligned_cols=138  Identities=21%  Similarity=0.325  Sum_probs=94.2

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCc-ee--EEEeeee--eeecCcCEEEEeCCceeEEEEEee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLR----EYKVAWVKMIT-QT--ILSIHHK--VVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+..++..+.+.+|++++|.|.+.+.+    .+.+.|+|.+. ..  .......  ......|+.+... ...++|.|.+
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~   81 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGS-RTDFTLIIDP   81 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE-TTEEEEEESS
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEec-CCeEEEEEcC
Confidence            456677889999999999999998877    78999999631 11  1111000  0112456766543 2345899999


Q ss_pred             ecCCCCeEEEEEEecCCC--cceeEEEEEEeCC-----ceeeecCcceeEEecCceEEEEEEecccC--CCceEEEcC
Q psy15734         94 VQETDRGWYMCQINTVPM--TSQKGYLQVVVPP-----RILLDRTSTDVVVREGTEVTLECSAVGYP--EPYVAWRRE  162 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p-----~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~  162 (314)
                      ++.+|+|.|+|.+.+...  ......|.|..++     .+.... +....+.+|+.++|.|.+.+.|  .+.+.|++.
T Consensus        82 v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~  158 (240)
T 1moe_A           82 VEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQ-SGAELVEPGASVKLSCTASGFNIKDTYMHWVKQ  158 (240)
T ss_dssp             CCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEE
T ss_pred             CChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeC-CCceEEeCCCcEEEEEEEcCccCCCCEEEEEEE
Confidence            999999999999976522  3344567776643     222221 3456788899999999988876  358999983

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.85  E-value=6.6e-20  Score=146.43  Aligned_cols=197  Identities=15%  Similarity=0.208  Sum_probs=112.4

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEeee---eeee---cCcCEEEEeCC-ceeEE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIHH---KVVT---QNKRVSITFND-HRSWF   88 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~~---~~~~---~~~~~~~~~~~-~~~~~   88 (314)
                      +.+..++..+.+.+|++++|.|.+.+.  +...+.|+|... .   .+.....   ....   ..+|+.+..+. ...++
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~   81 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTST   81 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCCCcEEE
Confidence            345667788999999999999999774  567999999642 2   1211110   0011   35677776533 24568


Q ss_pred             EEEeeecCCCCeEEEEEEecCC--C------cceeEEEEEEeC-------CceeeecCcceeEEecCceEEEEEEeccc-
Q psy15734         89 LHLRDVQETDRGWYMCQINTVP--M------TSQKGYLQVVVP-------PRILLDRTSTDVVVREGTEVTLECSAVGY-  152 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~--~------~~~~~~l~v~~~-------p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-  152 (314)
                      |.|.+++.+|+|.|.|.+.+..  .      ......|.|...       |...... +....+..|+.+.|.|.+.+. 
T Consensus        82 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~-p~~~~~~~g~~v~L~C~~~g~~  160 (242)
T 1hxm_B           82 LTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFL-PSIAETKLQKAGTYLCLLEKFF  160 (242)
T ss_dssp             EEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCC-CCGGGGGSSSCEEEEEEEEEES
T ss_pred             EEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEEC-CChhhcccCCCceEEEEEeeEE
Confidence            9999999999999999996532  1      012235555542       1111111 111112234445555554443 


Q ss_pred             CCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCe
Q psy15734        153 PEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGY  232 (314)
Q Consensus       153 p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~  232 (314)
                      |.                                                 .+.+.|+++++..+...........++.|
T Consensus       161 P~-------------------------------------------------~~~v~W~~~~~~~l~~~~~~~~~~~~~~~  191 (242)
T 1hxm_B          161 PD-------------------------------------------------VIKIHWEEKKSNTILGSQEGNTMKTNDTY  191 (242)
T ss_dssp             SC-------------------------------------------------CEEEEEEESSSCCCCCCEECCCEECSSSE
T ss_pred             CC-------------------------------------------------CeEEEEEcCCCEeecCccccceecCCCcE
Confidence            32                                                 13444444432111111000111122235


Q ss_pred             eeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        233 SCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       233 ~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      ...+.|.|.++.. | |.|+|.|.|..+.......+.+
T Consensus       192 ~~~s~L~i~~~~~-~-g~y~C~v~n~~~~~~~~~~~~~  227 (242)
T 1hxm_B          192 MKFSWLTVPEKSL-D-KEHRCIVRHENNKNGVDQEIIF  227 (242)
T ss_dssp             EEEEEEEECTGGG-G-SCEEEEEEETTSGGGSCEEEEE
T ss_pred             EEEEEEEEccccC-C-CEEEEEEEeCCCCCCceeEeec
Confidence            5567899988775 5 9999999999987766655544

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.84  E-value=7.2e-20  Score=144.06  Aligned_cols=189  Identities=16%  Similarity=0.261  Sum_probs=111.0

Q ss_pred             CcceEEEcCCcEEEEEEecCCCce---EEEEEEcCceeEEEeeeee-------eecCcCEEEEeC------CceeEEEEE
Q psy15734         28 VANVTATVGKEALMACVVENLREY---KVAWVKMITQTILSIHHKV-------VTQNKRVSITFN------DHRSWFLHL   91 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~---~v~W~~~~~~~~~~~~~~~-------~~~~~~~~~~~~------~~~~~~L~i   91 (314)
                      +..+.+..|++++|.|.+.+.+.+   .|.|+|+++..+.......       .....+......      ....++|.|
T Consensus         8 p~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I   87 (225)
T 4fmk_A            8 LPEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAF   87 (225)
T ss_dssp             CSEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEE
T ss_pred             CCEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEE
Confidence            446889999999999999875543   5899997655432211100       011122222211      123457999


Q ss_pred             eeecCCCCeEEEEEEecCCCc--ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEcCCCceee
Q psy15734         92 RDVQETDRGWYMCQINTVPMT--SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAIN  168 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~  168 (314)
                      .+++.+|+|.|+|.+.+....  .....+.+..+|......  .......++...+.|.+. +.|++.+.|++.+     
T Consensus        88 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~-----  160 (225)
T 4fmk_A           88 RGLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEA--QEVTIGPQSVAVARCVSTGGRPPARITWISSL-----  160 (225)
T ss_dssp             CSCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEE--CCBCCSSSCEEEEEEEEEEEBSCCEEEEECSS-----
T ss_pred             ccCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecc--cceeecceeeeeeeeeecCCCCCCEEEEEECC-----
Confidence            999999999999999654322  222344555555444332  222344555555555543 4566677777632     


Q ss_pred             cCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        169 YNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       169 ~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                                                   +..... .. ......+.+...+.|.|.++..+|+
T Consensus       161 ---------------------------------------------~~~~~~-~~-~~~~~~~~~~~~s~L~i~~~~~~d~  193 (225)
T 4fmk_A          161 ---------------------------------------------GGEAKD-TQ-EPGIQAGTVTIISRYSLVPVGRADG  193 (225)
T ss_dssp             ---------------------------------------------CCEEEE-EE-EECSSTTCEEEEEEEEECCCGGGTT
T ss_pred             ---------------------------------------------ccccCC-cc-eEEecCCCEEEEEEEEEeeCCHHHC
Confidence                                                         111110 00 0001112234456899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      |.|+|.|.|..+.......+.+
T Consensus       194 g~YtC~a~N~~~~~~~~~~v~l  215 (225)
T 4fmk_A          194 VKVTCRVEHESFEEPILLPVTL  215 (225)
T ss_dssp             CEEEEEEECTTCSSCEEEEEEC
T ss_pred             CEEEEEEEcCCCCeEEEEEEEE
Confidence            9999999999887755444433

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=99.84  E-value=5.2e-19  Score=155.22  Aligned_cols=218  Identities=16%  Similarity=0.229  Sum_probs=131.9

Q ss_pred             EcCCcEEEEEEecCC-Cc--eEEEEEEcCceeEEEeeeeee-ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         34 TVGKEALMACVVENL-RE--YKVAWVKMITQTILSIHHKVV-TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+|+.+.|.|.+.+. |.  ..+.|++++............ ..++.+.+.      ..|.|.+++..|+|.|+|.+.+.
T Consensus       139 ~~g~~v~L~C~~~g~~P~~p~~v~W~~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~d~g~Y~C~a~n~  212 (475)
T 1iga_A          139 QPDGNVVIACLVQGFFPQEPLSVTWSESGQGVTARNFPPSQDASGDLYTTS------SQLTLPATQCLAGKSVTCHVKHY  212 (475)
T ss_pred             CCCCeEEEEEEEeeecCCCceEEEEcCCCcccceEeCCceecCCCCcEEEE------EEEEechhHcCCCceEEEEEEEC
Confidence            689999999999886 54  399999854211000000000 122233322      26899999999999999999876


Q ss_pred             CCcceeEEEE--EE------------------eCCceeeecCcceeEEecCceEEEEEEecccCC---CceEEEcCCCce
Q psy15734        110 PMTSQKGYLQ--VV------------------VPPRILLDRTSTDVVVREGTEVTLECSAVGYPE---PYVAWRREDGKA  166 (314)
Q Consensus       110 ~~~~~~~~l~--v~------------------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~---p~~~W~~~~~~~  166 (314)
                      ........+.  |.                  .+|.+...+ +....+.+|+.+.|.|.+.|.++   +.+.| . ++..
T Consensus       213 ~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~-p~~~~~~~G~~v~L~C~~~g~~p~~~~~i~W-~-~~~~  289 (475)
T 1iga_A          213 TNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHR-PALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSG  289 (475)
T ss_pred             CCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcC-CChHHhccCCceEEEEEEEcccCCCceEEEE-C-CCCc
Confidence            4333233333  21                  133332222 22233578999999999998744   58999 4 2221


Q ss_pred             ee---------cCCe------eC------------------------------------CCeEEc-CCCcceeecCccEE
Q psy15734        167 IN---------YNGE------LV------------------------------------PPMLTI-PNQLEGAFVSQTVE  194 (314)
Q Consensus       167 ~~---------~~~~------~~------------------------------------~p~~~~-~~~~~~v~~g~~~~  194 (314)
                      ..         .++.      +.                                    +|.+.+ ++....+..|+++.
T Consensus       290 ~~~~~~~~~~~~~g~~~~~~~L~I~~~~~~d~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~  369 (475)
T 1iga_A          290 KSAVQGPPERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVT  369 (475)
T ss_pred             CCccccCceECCCCCEEEEEEEEEchHHhccCCcEEEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceE
Confidence            10         0110      00                                    333332 22223467899999


Q ss_pred             EEEEEeecCC--ceeEEecCCCeeeecCCceee--eEe---eC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        195 LHCHTEAFPA--SLNYWTNEKGDMIITGDDYED--SRL---IN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       195 l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~--~~~---~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |.|.+.|.++  +.+.|+++ +..+........  ...   .+ .|...+.|.|.....+|.|.|+|.|.|....
T Consensus       370 L~C~~~g~~P~~~~v~W~k~-g~~l~~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~~~g~YtC~a~n~~l~  443 (475)
T 1iga_A          370 LTCLARGFSPKDVLVRWLQG-SQELPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDWKKGDTFSCMVGHEALP  443 (475)
T ss_pred             EEEEEeeeECCCCEEEEEEC-CEECCCCceeecccccccCCCCCcEEEEEEEEEChHHhcCCCEEEEEEEcCCCC
Confidence            9999999644  48999997 443332221111  111   22 3666788999999999999999999998754

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.84  E-value=2.8e-19  Score=143.20  Aligned_cols=137  Identities=17%  Similarity=0.248  Sum_probs=87.3

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCC-----ceEEEEEEcCc-eeE--EEeeeeee--ecCcCEEEEeCCceeEEEEEe
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLR-----EYKVAWVKMIT-QTI--LSIHHKVV--TQNKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~v~W~~~~~-~~~--~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~   92 (314)
                      .+..++..+.+.+|++++|.|.+.+.+     .+.+.|+|.+. ..+  ........  ....|+.+... ...++|.|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~   81 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGS-GTDFTLKIS   81 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEE-TTEEEEEES
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEeccC-CCEEEEEEC
Confidence            455667889999999999999998876     68999999542 111  11100000  12456666542 234589999


Q ss_pred             eecCCCCeEEEEEEecCCC--cceeEEEEEEeCC------------ceeeecCcceeEEecCceEEEEEEecccC--CCc
Q psy15734         93 DVQETDRGWYMCQINTVPM--TSQKGYLQVVVPP------------RILLDRTSTDVVVREGTEVTLECSAVGYP--EPY  156 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p--~p~  156 (314)
                      +++.+|+|.|.|.+.+...  ......|.|..++            .+.... +....+.+|+.++|.|.+.+.+  .+.
T Consensus        82 ~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~-~~~~~v~~G~~v~L~C~~~~~~~~~~~  160 (247)
T 1svz_A           82 RVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQ-SGPELKKPGETVKISCKATNYAFTDYS  160 (247)
T ss_dssp             SCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEE-CCCEEECTTCCEEEEEEEESSCGGGSC
T ss_pred             CCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeC-CCceeecCCCcEEEEEEEcCcccCCcE
Confidence            9999999999999976432  1233567776543            111111 1233477788888888877663  457


Q ss_pred             eEEEc
Q psy15734        157 VAWRR  161 (314)
Q Consensus       157 ~~W~~  161 (314)
                      +.|++
T Consensus       161 v~W~k  165 (247)
T 1svz_A          161 MHWVK  165 (247)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            88887

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.84  E-value=3.7e-21  Score=150.54  Aligned_cols=184  Identities=17%  Similarity=0.234  Sum_probs=108.7

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEee--e--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIH--H--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      +..+.+.+|++++|.|.+.+.+.+.+.|++.. +..+....  .  .......|+.+... ...+.|.|.+++.+|+|.|
T Consensus         6 p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~v~~~D~G~Y   84 (212)
T 1nfd_E            6 PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTS-GTTATLTISGAQPEDEAAY   84 (212)
T ss_dssp             CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEE-TTEEEEEETTCCGGGCSEE
T ss_pred             CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEee-CCEEEEEECcCCcccCEEE
Confidence            77889999999999999987766789999854 22221100  0  00011356665542 2344899999999999999


Q ss_pred             EEEEecC-CCc---ceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCceeecCCe
Q psy15734        103 MCQINTV-PMT---SQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKAINYNGE  172 (314)
Q Consensus       103 ~C~~~~~-~~~---~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~~~~~~~  172 (314)
                      +|.+.+. ...   .....|.|.    .+|.+....  ....+.+|+.+.|.|.+.+. |+ +.+.|++ ++..+     
T Consensus        85 ~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~--~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~-----  156 (212)
T 1nfd_E           85 YCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFP--PSPEELRTNKATLVCLVNDFYPGSATVTWKA-NGATI-----  156 (212)
T ss_dssp             EEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCC--CCHHHHHTTEECCCEEEEEEBSSCCEEEEEE-TTEEE-----
T ss_pred             EEEEEcccCcccccCCceEEEEccCCCCCCEEEeeC--CchHhccCCceEEEEEEEeeECCccEEEEEE-CCeEc-----
Confidence            9999752 111   122345553    233333221  11122356666666666654 33 4666666 33322     


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc-eeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD-YEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                                                                   ..... .......++|...+.|.|.++..+|+|.|
T Consensus       157 ---------------------------------------------~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  191 (212)
T 1nfd_E          157 ---------------------------------------------NDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRV  191 (212)
T ss_dssp             ---------------------------------------------CSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCE
T ss_pred             ---------------------------------------------CCCeecCCceecCCCceEEEEEEEchhhcCCCCeE
Confidence                                                         11110 00011111244456899999999999999


Q ss_pred             EEEEeeCCCCceeE
Q psy15734        252 RCVAVNALGETDGF  265 (314)
Q Consensus       252 ~C~a~n~~g~~~~~  265 (314)
                      +|.|.|..+....+
T Consensus       192 ~C~a~n~~~~~~~~  205 (212)
T 1nfd_E          192 SCQVTHEGETVEKS  205 (212)
T ss_dssp             EEEEECTTTTCCCC
T ss_pred             EEEEEeCCceEEEE
Confidence            99999998765443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.84  E-value=7.3e-20  Score=146.42  Aligned_cols=189  Identities=17%  Similarity=0.310  Sum_probs=114.5

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-cee---EEEee-eee-eec---CcCEEEEeCCceeEEEEEe
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQT---ILSIH-HKV-VTQ---NKRVSITFNDHRSWFLHLR   92 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~---~~~~~-~~~-~~~---~~~~~~~~~~~~~~~L~i~   92 (314)
                      +.+..++..+.+.+|++++|.| ..+.+.+.+.|+|.. +..   +.... ... ...   +.|+.+.......++|.|.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~   81 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPDGSYFTLKIQ   81 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCTTSCEEEEEC
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEeccCceEEEEEC
Confidence            5667778889999999999999 556677899999832 111   11110 000 111   1677777655556789999


Q ss_pred             eecCCCCeEEEEEEecCC-----CcceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEE
Q psy15734         93 DVQETDRGWYMCQINTVP-----MTSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAW  159 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W  159 (314)
                      +++.+|+|.|.|.+.+..     .......|.|..      +|.+.... +....+..|+.+.|.|.+.+. |.+ .+.|
T Consensus        82 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W  160 (245)
T 4ei6_B           82 PTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSW  160 (245)
T ss_dssp             SCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             CCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeC-CCcccccCCCceEEEEEEeeEeCCCeEEEE
Confidence            999999999999997421     122334556652      33333221 122223446666677766653 333 5666


Q ss_pred             EcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-------eeCCe
Q psy15734        160 RREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-------LINGY  232 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-------~~~~~  232 (314)
                      ++ ++..+.                                                  .........       .++.|
T Consensus       161 ~~-~g~~l~--------------------------------------------------~~~~~~~~~~~~~~~~~~g~~  189 (245)
T 4ei6_B          161 WV-NGKEVH--------------------------------------------------SGVCTDPQPLKEQPALNDSRY  189 (245)
T ss_dssp             EE-TTEEEC--------------------------------------------------TTEEECSSCEESSTTSTTCCE
T ss_pred             EE-CCEECC--------------------------------------------------CCcccccccccccccCCCCCE
Confidence            66 443321                                                  110000000       12224


Q ss_pred             eeEEEEEEeecCCCC-CeEEEEEEeeCCCCce
Q psy15734        233 SCHMTLKIRSILSHQ-FGSYRCVAVNALGETD  263 (314)
Q Consensus       233 ~~~s~L~i~~~~~~d-~G~Y~C~a~n~~g~~~  263 (314)
                      ...+.|.|.....+| .|.|+|.|.|......
T Consensus       190 ~~~s~L~i~~~~~~d~~g~ytC~v~~~~l~~~  221 (245)
T 4ei6_B          190 ALSSRLRVSATFWQNPRNHFRCQVQFYGLSEN  221 (245)
T ss_dssp             EEEEEEEEEHHHHSCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEEEEcHHHhccCCCeEEEEEEECCCCCc
Confidence            555689999999888 9999999999765444

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.84  E-value=7.4e-20  Score=146.92  Aligned_cols=185  Identities=13%  Similarity=0.084  Sum_probs=111.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+. ..+.+|++++|.|.+.+ +...+.|+|++........   .   .+   .........|.|.+++.+|
T Consensus         5 ~~kP~i~~~P~-~~V~~G~~VtL~C~~~~-~~~~~~W~k~g~~~~~~~~---~---~~---~~~~~~~~~L~I~~v~~~D   73 (257)
T 1b6u_A            5 HRKPSLLAHPG-PLVKSEETVILQCWSDV-RFQHFLLHREGKFKDTLHL---I---GE---HHDGVSKANFSIGPMMQDL   73 (257)
T ss_dssp             CCCCEECCBSC-SEEESSCCEEEEEEESS-CCSEEEEEEESTTCEEEEE---E---CB---CCTTCEEEEEEECSCCTTT
T ss_pred             CCCCEEEEcCC-CEecCCCCEEEEEecCC-CCcEEEEEECCCCCCccee---e---ee---ccCCCceEEEEeecCCccc
Confidence            45677777675 67999999999999975 4678999996643211100   0   00   0111223479999999999


Q ss_pred             CeEEEEEEecC------CCcceeEEEEEEeC---CceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734         99 RGWYMCQINTV------PMTSQKGYLQVVVP---PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY  169 (314)
Q Consensus        99 ~G~Y~C~~~~~------~~~~~~~~l~v~~~---p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~  169 (314)
                      +|.|+|.+.+.      ...+..+.|.|...   |.+...+   ...+.+|++++|.|.+.+. .+.+.|++ ++..   
T Consensus        74 sG~Y~C~a~~~~~~~~~s~~S~~~~L~V~~~~~~P~l~~~p---~~~V~~G~~vtL~C~~~~~-~~~~~w~k-~g~~---  145 (257)
T 1b6u_A           74 AGTYRCYGSVTHSPYQLSAPSDPLDIVITGLYEKPSLSAQP---GPTVLAGESVTLSCSSRSS-YDMYHLSR-EGEA---  145 (257)
T ss_dssp             CEEEEEEEECSSCTTSCCCCCCCEEEEEECSSCCCEEECSS---CTTCBTTCEEEEEEECSSC-CSEEEEEE-TTSS---
T ss_pred             CEEEEEeEeccCCCccccccCCCEEEecccCCCCcceEccC---CCccCCCCEEEEEEeCCCC-CcEEEEEE-CCcc---
Confidence            99999998642      12244556666642   3333222   1235677777777776654 34666666 3221   


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                                                                    ..........  ..+.  ....|.|.+++  |+|
T Consensus       146 ----------------------------------------------~~~~~~~~~~--~~~~--~~~~l~I~~v~--D~G  173 (257)
T 1b6u_A          146 ----------------------------------------------HERRFSAGPK--VNGT--FQADFPLGPAT--HGG  173 (257)
T ss_dssp             ----------------------------------------------CEECCBCBCC--SSSC--CBEEEEEEECC--SCE
T ss_pred             ----------------------------------------------cCcccccccc--cCCc--eeEEEEecccc--cCE
Confidence                                                          1111000000  0000  01389999998  999


Q ss_pred             EEEEEEeeCCC-----CceeEEEEEEEecC
Q psy15734        250 SYRCVAVNALG-----ETDGFIKVYVNLVD  274 (314)
Q Consensus       250 ~Y~C~a~n~~g-----~~~~~~~l~V~~~~  274 (314)
                      .|+|.|.|...     ..+..+.|.|...|
T Consensus       174 ~Y~C~a~~~~~p~~~s~~S~pl~L~V~g~p  203 (257)
T 1b6u_A          174 TYRCFGSFRDSPYEWSNSSDPLLVSVTGNP  203 (257)
T ss_dssp             EEEEEEECSSCTTBBCCCCCCEEECCBCCC
T ss_pred             EEEEEEEcCCCCcccccCCCCEEEEEeccC
Confidence            99999997532     33456777777654

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.84  E-value=4.8e-20  Score=145.56  Aligned_cols=182  Identities=18%  Similarity=0.271  Sum_probs=105.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEE---Eeee----eee--ecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTIL---SIHH----KVV--TQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~---~~~~----~~~--~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..+.   ....    ...  ...+|+.+..+. ...++|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (225)
T 1op3_H            6 ESGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHK   85 (225)
T ss_dssp             EECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             cCCCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCCCCEEEEEECC
Confidence            34567899999999999998765  6789999964 22211   1100    000  124577776542 3456899999


Q ss_pred             ecCCCCeEEEEEEecCCC-----c----ceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceE
Q psy15734         94 VQETDRGWYMCQINTVPM-----T----SQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVA  158 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~-----~----~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~  158 (314)
                      ++.+|+|.|.|.+.+...     .    .....|.|..    +|.+.... +.. .+..|+.+.|.|.+.+. |.| .+.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-~~~-~~~~g~~v~L~C~~~g~~P~p~~v~  163 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLA-PSS-KSTSGGTAALGCLVKDYFPEPVTVS  163 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEEC-CCT-TCCCCCEEEEEEEEEEEBSSCCEEE
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEec-ccc-cccCCCcEEEEEEEEeEECCCeEEE
Confidence            999999999999976432     1    1233555553    12222211 010 12345555555555543 443 555


Q ss_pred             EEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeee-ecCCceeeeEeeCCeeeEEE
Q psy15734        159 WRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-ITGDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       159 W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~s~  237 (314)
                      |++                                                  ++.... .....  ....++.|...+.
T Consensus       164 W~~--------------------------------------------------~~~~~~~~~~~~--~~~~~g~~~~~s~  191 (225)
T 1op3_H          164 WNS--------------------------------------------------GALTSGVHTFPA--VLQSSGLYSLSSV  191 (225)
T ss_dssp             CCT--------------------------------------------------TSCCTTCEECCC--EECTTSCEEEEEE
T ss_pred             Eec--------------------------------------------------CCCcCCeEecCc--eeCCCCCEEEEEE
Confidence            554                                                  322100 00000  0011222455668


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      |.|.++..+| |.|+|.|.|..+...
T Consensus       192 L~i~~~~~~~-g~Y~C~a~n~~~~~~  216 (225)
T 1op3_H          192 VTVPSSSLGT-QTYICNVNHKPSNTK  216 (225)
T ss_dssp             EEEEGGGTTC-CCCCEEEEEGGGTEE
T ss_pred             EEEechhcCC-CcEEEEEEcCCCCcc
Confidence            9999999889 999999999765433

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=99.84  E-value=2.4e-19  Score=143.00  Aligned_cols=190  Identities=17%  Similarity=0.304  Sum_probs=112.1

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee-e---eeecCcCEEEEeCCceeEEEEEee
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH-K---VVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~-~---~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      +.+..++..+.+.+|++++|.|.+.+ +.+.+.|+|... .   .+..... .   .....+|+.+..+....++|.|.+
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I~~   81 (240)
T 3q5y_A            3 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   81 (240)
T ss_dssp             CCCEEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECS
T ss_pred             cccccCcceeeecCCCcEEEEEEeCC-CCceEEEEEECCCCCCEEEEEEcCCccccCcccCCeEEEEeCCCCEEEEEECc
Confidence            45667788899999999999999976 677999999421 1   1111110 0   011235777776555567899999


Q ss_pred             ecCCCCeEEEEEEecC----CCcceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEc
Q psy15734         94 VQETDRGWYMCQINTV----PMTSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRR  161 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~----~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~  161 (314)
                      ++.+|+|.|+|.+.+.    ........|.|..      +|.+.... +....+..|+.+.|.|.+.+ .|.+ .+.|++
T Consensus        82 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~  160 (240)
T 3q5y_A           82 LELEDSAMYFCASSLRWGDEQYFGPGTRLTVLEDLRNVTPPKVSLFE-PSKAEIANKQKATLVCLARGFFPDHVELSWWV  160 (240)
T ss_dssp             CCGGGCEEEEEEEESSTTBCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CChhHCEEEEEEEccCCCcceEEcCCEEEEEeccccCCCCCeeEEeC-CchhhcccCCceEEEEEEeeEECCCeEEEEEE
Confidence            9999999999999632    1112233455542      23332211 11222334555666666555 3333 455555


Q ss_pred             CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee--eeEeeC-CeeeEEEE
Q psy15734        162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE--DSRLIN-GYSCHMTL  238 (314)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~--~~~~~~-~~~~~s~L  238 (314)
                       ++..                                                  +.......  .....+ .|...+.|
T Consensus       161 -~g~~--------------------------------------------------l~~~~~~~~~~~~~~~g~~~~~s~L  189 (240)
T 3q5y_A          161 -NGKE--------------------------------------------------VHSGVSTDPQAYKESNYSYSLSSRL  189 (240)
T ss_dssp             -TTEE--------------------------------------------------ECTTEEECSSCEEEETTEEEEEEEE
T ss_pred             -CCEE--------------------------------------------------CcCcEecCCceeeCCCCCEEEEEEE
Confidence             3322                                                  21111100  011222 25556789


Q ss_pred             EEeecCCCC-CeEEEEEEeeCCCCcee
Q psy15734        239 KIRSILSHQ-FGSYRCVAVNALGETDG  264 (314)
Q Consensus       239 ~i~~~~~~d-~G~Y~C~a~n~~g~~~~  264 (314)
                      .|.....+| .|.|+|.|.|.......
T Consensus       190 ~i~~~~~~d~~g~YtC~v~~~~~~~~~  216 (240)
T 3q5y_A          190 RVSATFWHNPRNHFRCQVQFHGLSEED  216 (240)
T ss_dssp             EEEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             EECHHHhccCCCEEEEEEEcCCCCCcc
Confidence            999999999 67999999997654433

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=99.83  E-value=1.3e-19  Score=148.71  Aligned_cols=170  Identities=18%  Similarity=0.189  Sum_probs=123.0

Q ss_pred             cceeEEecCceEEEEEEecccC-CCceEEEcCCCceeecCC-------------eeC-----------------------
Q psy15734        132 STDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAINYNG-------------ELV-----------------------  174 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~p-~p~~~W~~~~~~~~~~~~-------------~~~-----------------------  174 (314)
                      +....+.+|+.+.|.|.+.+.| .+.+.|++.++..+....             .+.                       
T Consensus         9 p~~~~v~~G~~v~l~C~~~~~~~~~~i~W~~~~g~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~n~~g~~   88 (291)
T 1qz1_A            9 PSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDDSSTLTIYNANIDDAGIYKCVVTAEDGTQ   88 (291)
T ss_dssp             SSSEEEETTCCEEEEEEESSCCSCCEEEEECTTSCBCCSSCSSEEEEEEETTEEEEEECSCCGGGCEEEEEEEECTTSCE
T ss_pred             CCCceEeCCCeEEEEEEeCCCCCCcEeEEECCCCeECccCCceEEEEEcCCCeEEEEEecCCCCCCEEEEEEEEcCCCCe
Confidence            3566789999999999999886 689999985555443211             000                       


Q ss_pred             -----------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec
Q psy15734        175 -----------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       175 -----------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                                 +|.+...+....+.+|+.+.|.|.+.|.|.|.+.|++++.... ...........++     .|.|.++
T Consensus        89 ~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v~W~~~~~~~~-~~~~~~~~~~~~~-----~L~i~~~  162 (291)
T 1qz1_A           89 SEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVI-LKKDVRFIVLSNN-----YLQIRGI  162 (291)
T ss_dssp             EEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEETTSCSS-TTCCTTEEECTTS-----CEEETTC
T ss_pred             eEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEEEEEECCEEcc-cCCCceEEEccCC-----cEEEccC
Confidence                       6666667777789999999999999999999999999754433 2222233333444     8999999


Q ss_pred             CCCCCeEEEEEEeeCCCCc--eeEEEEEEEecCCCee----EEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        244 LSHQFGSYRCVAVNALGET--DGFIKVYVNLVDGDIF----QIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~----~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      ..+|+|.|+|.|.|..+..  ...+.|.|..+|....    ....+..++...+.|.+.+.|.|.+.|..
T Consensus       163 ~~~d~G~Y~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~  232 (291)
T 1qz1_A          163 KKTDEGTYRCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTK  232 (291)
T ss_dssp             CGGGCEEEEEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEE
T ss_pred             ccccCeEEEEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcEEEEE
Confidence            9999999999999976543  3456666665532111    11234455666799999999999999964

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=99.83  E-value=4.1e-19  Score=139.81  Aligned_cols=182  Identities=16%  Similarity=0.302  Sum_probs=109.2

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeE---EEeee--------eeeecCcCEEEEeCC-ceeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTI---LSIHH--------KVVTQNKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~---~~~~~--------~~~~~~~~~~~~~~~-~~~~~L~i   91 (314)
                      .+..+.+.+|++++|.|.+.+.  +...+.|+|... ..+   .....        ......+|+.+..+. ...++|.|
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   85 (221)
T 3m8o_H            6 ESGGGLVQPGGSLKLSCAASGFTLSGSNVHWVRQASGKGLEWVGRIKRNAESDATAYAASMRGRLTISRDDSKNTAFLQM   85 (221)
T ss_dssp             EESCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECCGGGTTCEEECGGGTTSEEEEEEGGGTEEEEEE
T ss_pred             ccCCEEEcCCCCEEEEEEcccccccccEEEEEEECCCCCcEEEEEEcccccCcccccCccccccEEEEecCCCCEEEEEE
Confidence            3456789999999999999864  357999998532 111   11100        001124677776543 34568999


Q ss_pred             eeecCCCCeEEEEEEecCC---CcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEecc-cCC-C-ceEEEc
Q psy15734         92 RDVQETDRGWYMCQINTVP---MTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVG-YPE-P-YVAWRR  161 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~-p-~~~W~~  161 (314)
                      .+++.+|+|.|.|.+.+..   .......|.|..    +|.+.... +...  .+|+.+.|.|.+.+ +|. + .+.|++
T Consensus        86 ~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~-~~~~--~~g~~v~L~C~~~~~~P~~~~~v~W~~  162 (221)
T 3m8o_H           86 NSLKSDDTAMYYCVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLS-LCST--QPDGNVVIACLVQGFFPQEPLSVTWSE  162 (221)
T ss_dssp             CSCCGGGCEEEEEEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEE-CCSC--CCTTEEEEEEEEEEEBSSCSEEEEESC
T ss_pred             CCCCHHHCEEEEEEEECCChhheECCCEEEEEecCCCCCCeEEEec-Cccc--ccCCCEEEEEEEEeeECCCCEEEEEEE
Confidence            9999999999999997642   122334566542    23332111 1111  45666777777665 444 2 566665


Q ss_pred             CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeee-EeeCCeeeEEEEEE
Q psy15734        162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS-RLINGYSCHMTLKI  240 (314)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~i  240 (314)
                       ++..+                                                 ..... .... ..++.|...+.|.|
T Consensus       163 -~g~~~-------------------------------------------------~~~~~-~~~~~~~~~~~~~~s~L~i  191 (221)
T 3m8o_H          163 -SGQGV-------------------------------------------------TARNF-PPSQDASGDLYTTSSQLTL  191 (221)
T ss_dssp             -CSTTC-------------------------------------------------EEEEC-CCEECSSSSCEEEEEEEEE
T ss_pred             -CCEEC-------------------------------------------------ceEEc-CceeeCCCCcEEEEEEEEE
Confidence             33221                                                 10000 0000 01222455568999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCc
Q psy15734        241 RSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      .+...+|.|.|+|.|.|..+..
T Consensus       192 ~~~~~~d~g~ytC~v~~~~~~~  213 (221)
T 3m8o_H          192 PATQCLAGKSVTCHVKHYTNPS  213 (221)
T ss_dssp             EGGGSCTTCEEEEEEEETTSCC
T ss_pred             CHHHcCCCCeEEEEEEECCCCc
Confidence            9999999999999999987643

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=99.83  E-value=1.7e-19  Score=145.25  Aligned_cols=97  Identities=16%  Similarity=0.218  Sum_probs=61.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+..+.+.+|++++|.|.+.+.  +.+.+.|+|.+. ..   +..... .......|+.+.... ..++|.|.+++.+|+
T Consensus         8 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~-~~~~L~I~~v~~~Ds   86 (256)
T 3ux9_B            8 QPPSVSGAPGQRVTISCSGSSSNIGSNYVSWYQQLPGTAPKLLIYDNNQRPSGVPDRFSGSKSG-TSASLAITGLQSEDE   86 (256)
T ss_dssp             CCSEEEECTTCCEEEEEECCTTTTTTSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEECSCCGGGC
T ss_pred             cCCcEEEcCCCcEEEEEecCCCCCCCceEEEEEECCCCCCEEEEEecCCCCCCcCCcEEEEccC-CEEEEEECCCChhhC
Confidence            3446889999999999999876  678999999532 11   111000 001123566665433 345899999999999


Q ss_pred             eEEEEEEecCCC----cceeEEEEEEeCC
Q psy15734        100 GWYMCQINTVPM----TSQKGYLQVVVPP  124 (314)
Q Consensus       100 G~Y~C~~~~~~~----~~~~~~l~v~~~p  124 (314)
                      |.|+|.+.+...    ......|.|..++
T Consensus        87 G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~  115 (256)
T 3ux9_B           87 ADYYCQVRDNNENEWVFGGGTKLTVLGSG  115 (256)
T ss_dssp             EEEEEEEEETTTTEEEECCCEEEEEC---
T ss_pred             EEEEEEEEECCCCceEECCCEEEEEECCC
Confidence            999999976421    2233466666544

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.83  E-value=6.1e-20  Score=142.61  Aligned_cols=186  Identities=16%  Similarity=0.153  Sum_probs=101.1

Q ss_pred             EEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCc
Q psy15734         33 ATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT  112 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  112 (314)
                      +.+|++++|.|.+   +.+.+.|+|+ +..+...     ..           ....|.|.+++.+|+|.|+|.+.+..  
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~-g~~l~~~-----~~-----------~~~~L~i~~v~~~DsG~Y~C~~~~~~--   72 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKD-GKMIGFL-----TE-----------DKKKWNLGSNAKDPRGMYQCKGSQNK--   72 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEET-TEEEEEE-----ES-----------SCCCEEEEEGGGCCEEEEEEESSSSC--
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEEC-CEECCCC-----CC-----------CCCeEEeCCCCcCCCEEEEEEecCCC--
Confidence            3579999999998   6789999994 4433211     00           11269999999999999999974422  


Q ss_pred             ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceee-cCc
Q psy15734        113 SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAF-VSQ  191 (314)
Q Consensus       113 ~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~-~g~  191 (314)
                      +..+.|.+...+...............-+..    ...+.....-                 ++.+...+  ..+. +|+
T Consensus        73 s~~~~v~v~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~-----------------~~~~~~~p--~~v~~~G~  129 (204)
T 1sy6_A           73 SKPLQVYYRMGSADDAKKDAAKKDDAKKDDA----KKDGSDGNEE-----------------MGGITQTP--YKVSISGT  129 (204)
T ss_dssp             CCCEEEEEEC---------------------------------------------------------CCC--CEEEEETT
T ss_pred             CeeEEEEEEEecccccccccccccccccccc----cccccccccc-----------------ccceecCC--ceeeecCC
Confidence            2223444431110000000000000000000    0000000000                 00000011  1233 788


Q ss_pred             cEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec-CCCCCeEEEEEEeeCCCCc-eeEEEEE
Q psy15734        192 TVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI-LSHQFGSYRCVAVNALGET-DGFIKVY  269 (314)
Q Consensus       192 ~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~-~~~d~G~Y~C~a~n~~g~~-~~~~~l~  269 (314)
                      ++.|.|.  |.|.|.+.|++++..+........+ ...++     .|.|.++ +.+|+|.|+|.|.|..|.. +..+.|+
T Consensus       130 ~v~L~C~--g~p~p~i~W~k~~~~l~~~~~~~~~-~~~~~-----~L~I~~v~~~~D~G~Y~C~A~N~~g~~~s~~l~l~  201 (204)
T 1sy6_A          130 TVILTCP--QYPGSEILWQHNDKNIGGDEDDKNI-GSDED-----HLSLKEFSELEQSGYYVCYPRGSKPEDANFYLYLR  201 (204)
T ss_dssp             EEEEECS--CCCSSCEEEEETTEEESCCTTCTTE-EEETT-----EEEETTCCHHHHCEEEEEEETTSCGGGSSCEEEEE
T ss_pred             cEEEEcC--CCCCCceEEEECCEECCCccCCceE-ecCCC-----EEEEeeCCccccCEEEEEEeccCCCCceeEEEEEE
Confidence            8888888  7788888888864433222122222 12344     9999999 9999999999999999963 5666665


Q ss_pred             EE
Q psy15734        270 VN  271 (314)
Q Consensus       270 V~  271 (314)
                      |.
T Consensus       202 ~~  203 (204)
T 1sy6_A          202 AR  203 (204)
T ss_dssp             EC
T ss_pred             Ee
Confidence            53

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.83  E-value=1.9e-19  Score=139.51  Aligned_cols=126  Identities=19%  Similarity=0.321  Sum_probs=75.0

Q ss_pred             ceEEEcCCcEEEEEEecC----CCceEEEEEEcCceeEEEe-eeee---eecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         30 NVTATVGKEALMACVVEN----LREYKVAWVKMITQTILSI-HHKV---VTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~----~~~~~v~W~~~~~~~~~~~-~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      .+.+.+|+++.|.|.+.+    .+.+.+.|++++ ..+... ....   .....|..+...  ..++|.|.+++.+|+|.
T Consensus         3 ~v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~-~~i~~~~~~~~~~~~~~~~r~~~~~~--~~~~L~I~~v~~~D~G~   79 (201)
T 1dr9_A            3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEK-KMVLTMMSGDMNIWPEYKNRTIFDIT--NNLSIVILALRPSDEGT   79 (201)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETT-EEEEEEETTEEEECHHHHTTEEEEST--TTTEEEECSCCGGGCEE
T ss_pred             eEEEEeCCCEEEecccCCCcccccccEEEEEeCC-cEEEEEeCCceeecCcccceeEEccC--CCcEEEEecccchhCeE
Confidence            578999999999999953    355799999954 333211 1100   011234443221  23479999999999999


Q ss_pred             EEEEEecCC-Cc-----ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEec-ccCCCceEEEc
Q psy15734        102 YMCQINTVP-MT-----SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRR  161 (314)
Q Consensus       102 Y~C~~~~~~-~~-----~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~  161 (314)
                      |+|.+.+.. ..     ...+.|.|..++.....   .......|+.+.|.|.+. ++|.|.+.|++
T Consensus        80 Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~---~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k  143 (201)
T 1dr9_A           80 YECVVLKYEKDAFKREHLAEVTLSVKADFPTPSI---SDFEIPTSNIRRIICSTSGGFPEPHLSWLE  143 (201)
T ss_dssp             EEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEE---EEEECSSTTEEEEEEEEEEESSCEEEEEEE
T ss_pred             EEEEEEcCCCCccccccccEEEEEEcCCCCCCce---EeccCCCCCeEEEEEecCCccCCCEEEEEE
Confidence            999997742 22     23455666554211100   001113466667777763 66666777776

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=99.83  E-value=2.3e-19  Score=145.54  Aligned_cols=199  Identities=15%  Similarity=0.223  Sum_probs=117.0

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC--ce--eEEEeee-eeeec----CcCEEEEeCCceeEEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI--TQ--TILSIHH-KVVTQ----NKRVSITFNDHRSWFLH   90 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~~~~~~~-~~~~~----~~~~~~~~~~~~~~~L~   90 (314)
                      ..+.+..++..+.+.+|++++|.|.+. .+.+.+.|+|..  ..  .+..... .....    ++|+.+..+....++|.
T Consensus        25 ~~~~v~~~p~~v~v~~G~~v~L~C~~~-~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL~  103 (268)
T 3pl6_D           25 GGAGVSQTPSNKVTEKGKYVELRCDPI-SGHTALYWYRQSLGQGPEFLIYFQGTGAADDSGLPNDRFFAVRPEGSVSTLK  103 (268)
T ss_dssp             --SSCBCCCSEEEEETTCCEEEEEBCB-TTCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEE
T ss_pred             cCceeEeCCCEEEecCCCCEEEEEEeC-CCCceEEEEEECCCCCcEEEEEECCCCccccCCCccCcEEEEecCCCEEEEE
Confidence            346677788889999999999999987 466899999942  11  1111110 00111    16777776545567899


Q ss_pred             EeeecCCCCeEEEEEEecC---CCcceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecccCC-C-ceEE
Q psy15734         91 LRDVQETDRGWYMCQINTV---PMTSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVGYPE-P-YVAW  159 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~---~~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~-p-~~~W  159 (314)
                      |.+++.+|+|.|+|.+.+.   ........|.|..      +|.+.... +....+..|+.++|.|.+.+.++ + .+.|
T Consensus       104 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W  182 (268)
T 3pl6_D          104 IQRTERGDSAVYLCATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSW  182 (268)
T ss_dssp             ECSCCGGGCEEEEEEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEE
T ss_pred             ECCCCcccCEEEEEEEecCCCceeeCCcEEEEEecCcccccCCceEEeC-CCcccccCCCceEEEEEECcccCCCeEEEE
Confidence            9999999999999999753   1222334566654      34333221 22223345677777777766433 3 6677


Q ss_pred             EcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEE
Q psy15734        160 RREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~  239 (314)
                      ++ ++..+.......+..                                       ...    .....++.|...+.|.
T Consensus       183 ~~-~g~~l~~~~~~~~~~---------------------------------------~~~----~~~~~~~~~~~~s~l~  218 (268)
T 3pl6_D          183 WV-NGKEVHSGVCTDPQP---------------------------------------LKE----QPALNDSRYSLSSRLR  218 (268)
T ss_dssp             EE-SSSEECTTEEECSSC---------------------------------------EES----STTCTTCCEEEEEEEE
T ss_pred             EE-CCEECCCCeEecccc---------------------------------------ccc----cccCCCCcEEEEEEEE
Confidence            76 443332110000000                                       000    0000122245556899


Q ss_pred             EeecCCCC-CeEEEEEEeeCCCCcee
Q psy15734        240 IRSILSHQ-FGSYRCVAVNALGETDG  264 (314)
Q Consensus       240 i~~~~~~d-~G~Y~C~a~n~~g~~~~  264 (314)
                      |.....+| .|.|+|.|.|.......
T Consensus       219 i~~~~~~d~~g~YtC~v~~~~l~~~~  244 (268)
T 3pl6_D          219 VSATFWQNPRNHFRCQVQFYGLSEND  244 (268)
T ss_dssp             EEHHHHSCTTCEEEEEEEECCBCTTS
T ss_pred             EcHHHhccCCCEEEEEEEcCCCCCCc
Confidence            99998888 99999999998755433

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.83  E-value=1.2e-19  Score=143.55  Aligned_cols=186  Identities=18%  Similarity=0.226  Sum_probs=107.0

Q ss_pred             CcceEEEcCCcEEEEEEecCCCc----eEEEEEEcC-cee---EEEeee---eee--ecCcCEEEEeCC-ceeEEEEEee
Q psy15734         28 VANVTATVGKEALMACVVENLRE----YKVAWVKMI-TQT---ILSIHH---KVV--TQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~----~~v~W~~~~-~~~---~~~~~~---~~~--~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      +..+.+.+|++++|.|.+.+.+.    +.+.|+|.+ +..   +.....   ...  ...+|+.+..+. ...++|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~   86 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTSRDMVFMKITS   86 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETTTTEEEEEECS
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCCCCeEEEEEcC
Confidence            55678999999999999987664    799999863 221   111100   000  123577766532 2346899999


Q ss_pred             ecCCCCeEEEEEEecCCC------c----ceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ce
Q psy15734         94 VQETDRGWYMCQINTVPM------T----SQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YV  157 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~------~----~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~  157 (314)
                      ++.+|+|.|.|.+.+...      .    .....|.|..    +|.+....  ....+.+|+.+.|.|.+.+. |.| .+
T Consensus        87 v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~--~~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           87 VDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLA--PVCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             CCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEEC--C-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred             CCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEec--ccccccCCCCEEEEEEEccEeCCCEEE
Confidence            999999999999965431      1    1224555542    23332221  11123455556666665553 444 55


Q ss_pred             EEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEE
Q psy15734        158 AWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       158 ~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (314)
                      .|++                                                  ++....... ...+ ...+.|...+.
T Consensus       165 ~W~~--------------------------------------------------~~~~~~~~~-~~~~-~~~~~~~~~s~  192 (228)
T 3bae_H          165 TWNS--------------------------------------------------GSLSSGVHT-FPAV-LQSDLYTLSSS  192 (228)
T ss_dssp             EEGG--------------------------------------------------GTCCTTEEE-EEEE-EETTEEEEEEE
T ss_pred             EEee--------------------------------------------------CCcccCceE-cCce-eCCCcEEEEEE
Confidence            5555                                                  322100000 0000 01122445568


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      |.|.++..+| |.|+|.|.|..+.......+
T Consensus       193 L~i~~~~~d~-g~YtC~~~n~~~~~~~~~~~  222 (228)
T 3bae_H          193 VTVTSSTWPS-ESITCNVAHPASSTKVDKKI  222 (228)
T ss_dssp             EEEETTTTTT-SCCEEEEEEGGGTEEEEEEC
T ss_pred             EEEEhhhcCC-CcEEEEEEECCCCCCEEEEc
Confidence            9999988866 99999999998876554443

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=99.83  E-value=4.3e-19  Score=140.76  Aligned_cols=194  Identities=16%  Similarity=0.223  Sum_probs=109.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ce---eEEEeee---eee--ecCcCEEEEeC-CceeEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQ---TILSIHH---KVV--TQNKRVSITFN-DHRSWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~---~~~~~~~---~~~--~~~~~~~~~~~-~~~~~~L~i~~~   94 (314)
                      .+..+.+.+|++++|.|.+.+.+  ...+.|||.. +.   .+.....   ...  ...+|+.+..+ ....++|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (232)
T 1dn0_B            6 QWGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSV   85 (232)
T ss_dssp             EECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             CCCCEEEeCCCcEEEEEEEccccCCCceEEEEEeCCCCCeEEEEEEecCCceeeCCccCCeEEEEEeCCCCEEEEEECCC
Confidence            34567899999999999997653  5789999964 22   1211110   001  12467777654 234568999999


Q ss_pred             cCCCCeEEEEEEec-CC--C----cceeEEEEEEe----CCceeeecCcceeEEecC-ceEEEEEEeccc-CCC-ceEEE
Q psy15734         95 QETDRGWYMCQINT-VP--M----TSQKGYLQVVV----PPRILLDRTSTDVVVREG-TEVTLECSAVGY-PEP-YVAWR  160 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~-~~--~----~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g-~~~~l~C~~~~~-p~p-~~~W~  160 (314)
                      +.+|+|.|.|.+.+ .+  .    ......|.|..    +|.+.... + ...+..| +.+.|.|.+.+. |.| .+.|+
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p-~~~~~~g~~~v~L~C~~~g~~P~p~~v~W~  163 (232)
T 1dn0_B           86 TAADTAVYYCARPPHDTSGHYWNYWGQGTLVTVSSGSASAPTLFPLV-S-CENSPSDTSSVAVGCLAQDFLPDSITFSWK  163 (232)
T ss_dssp             CGGGCEEEEEEECSSTTSCSCCSEECCCEEEEECSSCCBCCEEEEEE-C-C------CCSEEEEEEEEEEBSSCCEEEEE
T ss_pred             CcccCEEEEEEEecCCcCCchhhhcccceEEEEccCCCCCCceEEec-c-ccccCCCCCcEEEEEEEEEEeCCCeEEEEE
Confidence            99999999999963 11  1    11234566654    13222211 1 1112345 556666665553 444 55565


Q ss_pred             cCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734        161 REDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      +.++..                                                  +.....+......+.|...+.|.|
T Consensus       164 ~~~g~~--------------------------------------------------l~~~~~~~~~~~~~~~~~~s~L~i  193 (232)
T 1dn0_B          164 YKNNSD--------------------------------------------------ISSTRGFPSVLRGGKYAATSQVLL  193 (232)
T ss_dssp             ETTSCE--------------------------------------------------ECCEEECCCEEETTEEEEEEEEEE
T ss_pred             cCCCCc--------------------------------------------------eeeEEECCccccCCcEEEEEEEEE
Confidence            532222                                                  111000000011122555678999


Q ss_pred             eecCC--CCCeEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        241 RSILS--HQFGSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       241 ~~~~~--~d~G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      .+...  +|.|.|+|.|.|..+.......|.|..
T Consensus       194 ~~~~~~~~d~g~ytC~v~n~~~~~~~~~~i~~~~  227 (232)
T 1dn0_B          194 PSKDVMAGTDEHVVCKVQHPNGNKEKNVPLPVIA  227 (232)
T ss_dssp             CTTCC---CCCEEEEEEECTTCCEEEEEECCC--
T ss_pred             cHHHhcccCCCeEEEEEEeCCCCcceeEecCCCC
Confidence            98887  899999999999998876666665543

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.82  E-value=2.3e-19  Score=145.70  Aligned_cols=198  Identities=18%  Similarity=0.300  Sum_probs=115.0

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-cee---EEEeeee-eeec----CcCEEEEeCCceeEEEEE
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQT---ILSIHHK-VVTQ----NKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~---~~~~~~~-~~~~----~~~~~~~~~~~~~~~L~i   91 (314)
                      .+.+..++..+.+.+|++++|.|.+.+ +.+.+.|+|.. +..   +...... ....    +.|+.+.......++|.|
T Consensus        27 ~~~v~~~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~sL~I  105 (270)
T 3qib_D           27 GMKVIQTPRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNKNNEFKFLINFQNQEVLQQIDMTEKRFSAECPSNSPCSLEI  105 (270)
T ss_dssp             -CCCEEECSEEEEETTSCEEEEEECCT-TCCEEEEEEECTTCCEEEEEEEETTEEEEECHHHHHHEEEECCTTSCEEEEE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEEEecC-CCceEEEEEECCCCCcEEEEEECCCCceecCCccCCcEEEEeCCCcEEEEEE
Confidence            456677788899999999999999866 66799999843 111   1111000 0000    116666554445668999


Q ss_pred             eeecCCCCeEEEEEEecCC-----CcceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceE
Q psy15734         92 RDVQETDRGWYMCQINTVP-----MTSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVA  158 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~  158 (314)
                      .+++.+|+|.|.|.+.+..     .......|.|..      +|.+.... +....+..|+.++|.|.+.+ .|.| .+.
T Consensus       106 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~v~L~C~~~g~~P~~~~v~  184 (270)
T 3qib_D          106 QSSEAGDSALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELS  184 (270)
T ss_dssp             SSCCGGGCEEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             CCCCHhHCeEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEEC-CCccccccCCceEEEEEecceeCCCeEEE
Confidence            9999999999999997532     112234566654      34333221 11222334667777777666 4544 566


Q ss_pred             EEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEE
Q psy15734        159 WRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       159 W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L  238 (314)
                      |++ ++..+.......+.                                       ....    .....++.|...+.|
T Consensus       185 W~k-~g~~l~~~~~~~~~---------------------------------------~~~~----~~~~~~~~~~~~s~L  220 (270)
T 3qib_D          185 WWV-NGKEVHSGVCTDPQ---------------------------------------PLKE----QPALNDSRYALSSRL  220 (270)
T ss_dssp             EEE-TTEEECTTEEECSS---------------------------------------CEES----CTTSSSCCEEEEEEE
T ss_pred             EEE-CCEECCCCcccccc---------------------------------------cccc----cccCCCCCEEEEEEE
Confidence            766 44333211000000                                       0000    000012224555689


Q ss_pred             EEeecCCCC-CeEEEEEEeeCCCCcee
Q psy15734        239 KIRSILSHQ-FGSYRCVAVNALGETDG  264 (314)
Q Consensus       239 ~i~~~~~~d-~G~Y~C~a~n~~g~~~~  264 (314)
                      .|.....+| .|.|+|.|.|.......
T Consensus       221 ~i~~~~~~d~~g~YtC~v~~~~l~~~~  247 (270)
T 3qib_D          221 RVSATFWQNPRNHFRCQVQFYGLSEND  247 (270)
T ss_dssp             EEEHHHHHSTTCEEEEEEEECCBCTTS
T ss_pred             EEcHHHhccCCCeEEEEEEecCCCCcc
Confidence            999998888 99999999998765443

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.82  E-value=2.8e-19  Score=135.96  Aligned_cols=123  Identities=20%  Similarity=0.260  Sum_probs=77.3

Q ss_pred             CcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeee----eeecC--cCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         28 VANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHK----VVTQN--KRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~----~~~~~--~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      ...+.+.+|++++|.|.+.. .+.+.+.|++.+...+......    .....  +|+.+.   ..+++|.|.+++.+|+|
T Consensus         6 ~~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~---~~~~sL~I~~v~~~D~G   82 (180)
T 2dru_A            6 VPNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLD---KTNGALRIYNVSKEDRG   82 (180)
T ss_dssp             CCEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEEC---TTTCCEEECSCCGGGCE
T ss_pred             cceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEe---CCCccEEEcCCCHHHCe
Confidence            45688999999999999854 3468999999533333321110    11122  466652   22347999999999999


Q ss_pred             EEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEe-cccCCCceEEEc
Q psy15734        101 WYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSA-VGYPEPYVAWRR  161 (314)
Q Consensus       101 ~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~-~~~p~p~~~W~~  161 (314)
                      .|+|.+.+.......+.|.|.+++...      ... ..++.+.|.|.+ .+ |.|.+.|++
T Consensus        83 ~Y~C~v~~~~~~~~~~~L~V~~~~~~P------~i~-~~~~~v~L~C~~~~g-p~p~i~W~~  136 (180)
T 2dru_A           83 DYYMRMLHETEDQWKITMEVYEMVSKP------MIY-WECSNATLTCEVLEG-TDVELKLYQ  136 (180)
T ss_dssp             EEEEEEESSSEEEEEEEEEEECCCCCC------EEE-EEGGGTEEEEECSSC-TTCEEEEEE
T ss_pred             EEEEEEEcCCeEEEEEEEEEECCCCCC------EEE-ecCCCEEEEEEeCCC-CCCEEEEEE
Confidence            999998654433455667776543211      111 133457777776 44 666777776

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.82  E-value=3.2e-19  Score=145.56  Aligned_cols=89  Identities=12%  Similarity=0.270  Sum_probs=65.6

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeee--e-ee---ecCcCEEEEeCCceeEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHH--K-VV---TQNKRVSITFNDHRSWFL   89 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~--~-~~---~~~~~~~~~~~~~~~~~L   89 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+. ..   +.....  . ..   ....|+.+..+....++|
T Consensus        23 ~~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~sL  102 (279)
T 2wbj_D           23 GGAVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASLTLSTL  102 (279)
T ss_dssp             CCCCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEECSSSEEEE
T ss_pred             ccceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeCCCCEEEE
Confidence            35667778889999999999999999887889999999642 11   111110  0 00   124577777654456689


Q ss_pred             EEeeecCCCCeEEEEEEec
Q psy15734         90 HLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~  108 (314)
                      .|.+++.+|+|.|+|.+.+
T Consensus       103 ~I~~v~~~D~G~Y~C~~~~  121 (279)
T 2wbj_D          103 TVTSAHPEDSSFYICSARD  121 (279)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EEccCCccCCEEEEEEEcc
Confidence            9999999999999999976

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.82  E-value=5.9e-20  Score=140.61  Aligned_cols=169  Identities=18%  Similarity=0.239  Sum_probs=97.8

Q ss_pred             eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEee-ecCCCCeEEEEEEecC
Q psy15734         31 VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRD-VQETDRGWYMCQINTV  109 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~-~~~~d~G~Y~C~~~~~  109 (314)
                      ..+.+|+++.|.|.+.+ +. .+.|+|++ ..+.        .+          ...+|.|.+ ++.+|+|.|+|.+.|.
T Consensus         9 ~v~~~G~~v~L~C~~~~-~~-~i~W~k~g-~~l~--------~~----------~~~~L~I~~~~~~~D~G~Y~C~a~n~   67 (186)
T 1jbj_A            9 KVSISGTSVELTCPLDS-DE-NLKWEKNG-QELP--------QK----------HDKHLVLQDFSEVEDSGYYVCYTPAS   67 (186)
T ss_dssp             EEEEETTEEEEECSSCC-CT-TCEEEETT-EEEC--------SC----------CCSEEEEESCCTTTSCEEEEEECSSC
T ss_pred             EEEeCCcEEEEEEeCCC-CC-ceEEEECC-EECC--------CC----------CCCEEEECCCCccccCEEEEEEEEeC
Confidence            34578999999999987 43 49999954 3321        11          012799999 9999999999999765


Q ss_pred             -CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceee
Q psy15734        110 -PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAF  188 (314)
Q Consensus       110 -~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~  188 (314)
                       +.......+.|...+.....  ...  ...         ......+.+.-......              .......+.
T Consensus        68 ~g~~~~~~~~~v~~~~~~~~~--~~~--~~~---------~~~~~~~~~~~~~~~~~--------------~~~~~~~~~  120 (186)
T 1jbj_A           68 NKNTYLYLKARVGSADDAKKD--AAK--KDD---------AKKDDAKKDGSQTNKAK--------------NLVQVDGSR  120 (186)
T ss_dssp             CCCCCEEECCCCCSCCCCCCC--CCC--CCC---------CSCCSSSTTCCSCCCCS--------------SCCEECCCS
T ss_pred             CCcEEEEEEEEEecccccccc--ccc--ccc---------cccCCcccccccccccc--------------ccccceecC
Confidence             33233333333221110000  000  000         00000010000000000              000012345


Q ss_pred             cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +|+++.|.|.+   |.|.+.|++++. .+.....      ...     .|.|.++..+|+|.|+|.|.|..|..
T Consensus       121 ~G~~v~l~C~~---p~p~i~W~k~g~-~i~~~~~------~~~-----~L~i~~v~~~D~G~Y~C~a~N~~g~~  179 (186)
T 1jbj_A          121 GDGSVLLTCGL---TDKTIKWLKDGS-IISPLNA------TKN-----TWNLGNNAKDPRGTYQCQGAKETSNP  179 (186)
T ss_dssp             SSCEEEEECSS---SCSCEEEEETTE-ECCCSSC------CSS-----CCEEEETTSCCEEEEEEEESSCEEEE
T ss_pred             CCCeEEEEeeC---CCCeEEEEECCE-ECcccCC------Ccc-----eEEECCCCcCcCEEEEEEEEcCcCCc
Confidence            89999999988   888999999743 3322111      222     89999999999999999999998865

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.82  E-value=5.3e-21  Score=151.87  Aligned_cols=188  Identities=15%  Similarity=0.240  Sum_probs=93.6

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-eeE--EEeee--eeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QTI--LSIHH--KVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      ..+.+..++..+.+.+|++++|.|.+.+.+.+.+.|+|.+. ..+  .....  .......|+.+.. .....+|.|.++
T Consensus        22 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~~~~L~I~~v  100 (233)
T 3bqu_C           22 AETTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG-YGTDFVFTIENM  100 (233)
T ss_dssp             -CCCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE-EEEEEEEC----
T ss_pred             cceeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec-cCCEEEEEECCC
Confidence            35666666888999999999999999876667899998642 211  11000  0001123333322 122347999999


Q ss_pred             cCCCCeEEEEEEecCCCc--ceeEEEEEEe---CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCcee
Q psy15734         95 QETDRGWYMCQINTVPMT--SQKGYLQVVV---PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKAI  167 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~--~~~~~l~v~~---~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~~  167 (314)
                      +.+|+|.|.|.+.+....  .....|.|..   +|.+...+.  .....+|+.++|.|.+.+. |.+ .+.|++ ++..+
T Consensus       101 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~--~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~g~~~  177 (233)
T 3bqu_C          101 LSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPP--SSEQLTSGGASVVCFLNNFYPKDINVKWKI-DGSER  177 (233)
T ss_dssp             -CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECC--CHHHHHTTEEEEEEEEEEEBSSCEEEEEEE-C----
T ss_pred             CHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCC--CHHhhcCCceEEEEEEccccCCceEEEEEE-CCeeC
Confidence            999999999999654221  1122445543   344433221  1112356677777777664 332 567776 33321


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC--CceeeeE-eeCCeeeEEEEEEeecC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG--DDYEDSR-LINGYSCHMTLKIRSIL  244 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~--~~~~~~~-~~~~~~~~s~L~i~~~~  244 (314)
                      .                                                  ..  ....... .++.|...+.|.|..+.
T Consensus       178 ~--------------------------------------------------~~~~~~~~~~~~~~~~~~~~s~L~i~~~~  207 (233)
T 3bqu_C          178 Q--------------------------------------------------NGVLNSWTDQDSKDSTYSMSSTLTLTKDE  207 (233)
T ss_dssp             ---------------------------------------------------CCEEEEECCCCTTTCCEEEEEEEEEEHHH
T ss_pred             C--------------------------------------------------CCceEecCCccCCCCCEEEEEEEEECHHH
Confidence            1                                                  10  0000000 11224455699999999


Q ss_pred             CCCCeEEEEEEeeCCCC
Q psy15734        245 SHQFGSYRCVAVNALGE  261 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~  261 (314)
                      .+|+|.|+|.|.|....
T Consensus       208 ~~d~g~Y~C~a~n~~~~  224 (233)
T 3bqu_C          208 YERHNSYTCEATHKTST  224 (233)
T ss_dssp             HHTCCCEEEEEEEC---
T ss_pred             hCCCCCEEEEEEeCCCC
Confidence            99999999999997654

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=99.82  E-value=2.6e-19  Score=143.96  Aligned_cols=190  Identities=16%  Similarity=0.293  Sum_probs=112.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeE--E-Eeee------eeeecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTI--L-SIHH------KVVTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~--~-~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.  +...+.|+|... ...  . ....      ......+|+.+..+. ...++|.|.+
T Consensus         6 ~p~~v~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (253)
T 3liz_H            6 ESGGGLVQPGGSLKLSCAASGFTFSSFAMSWGRQTPDKRLELVATINSNGASTYYPDTVKGRFTISRDNAKNTLFLQMSS   85 (253)
T ss_dssp             EECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEECCTTTTTTCEEEEEGGGTEEEEEECS
T ss_pred             cCCCEEECCCCcEEEEEEeeCccccCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEEeCCCCEEEEEECC
Confidence            4557889999999999999763  357899999542 111  1 1000      001123577776543 3456899999


Q ss_pred             ecCCCCeEEEEEEecCC-----CcceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEcC
Q psy15734         94 VQETDRGWYMCQINTVP-----MTSQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRRE  162 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~-----~~~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~~  162 (314)
                      ++.+|+|.|.|.+.+..     .......|.|.    .+|.+....  ....+..|+.+.|.|.+.+ +|.+ .+.|++ 
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~~-  162 (253)
T 3liz_H           86 LKSEDTAMYYCTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLA--PGSAAQTNSMVTLGCLVKGYFPEPVTVTWNS-  162 (253)
T ss_dssp             CCGGGCEEEEEEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEEC--C------CCEEEEEEEEEEEBSSCCEEEEGG-
T ss_pred             CChhhCEEEEEEEecCCcceeeEECCCEEEEEeccCCCCCeEEEec--CCcccCCCCcEEEEEEEeeEeCCCeEEEEEe-
Confidence            99999999999996532     11222356654    233333221  1223445666677776665 4544 566665 


Q ss_pred             CCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEee
Q psy15734        163 DGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ++..                                                 ......  ......+.|...+.|.|.+
T Consensus       163 ~~~~-------------------------------------------------~~~~~~--~~~~~~g~~~~~s~L~i~~  191 (253)
T 3liz_H          163 GSLS-------------------------------------------------SGVHTF--PAVLQSDLYTLSSSVTVPS  191 (253)
T ss_dssp             GTBC-------------------------------------------------TTEEEC--CCEEETTEEEEEEEEEEET
T ss_pred             CCee-------------------------------------------------cceEeC--CccccCCeEEEEEEEEEcH
Confidence            2211                                                 000000  0001112345556999999


Q ss_pred             cCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        243 ILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      ...+| |.|+|.|.|..+.......|.+.
T Consensus       192 ~~~~d-g~ytC~v~~~~~~~~~~~~~~~~  219 (253)
T 3liz_H          192 STWPS-ETVTCNVAHPASSTKVDKKIVPR  219 (253)
T ss_dssp             TSTTT-SCCEEEEEEGGGTEEEEEECCCC
T ss_pred             HHCCC-ceEEEEEEECCCCcceEEEecCc
Confidence            99999 99999999998877666666554

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.82  E-value=3.5e-20  Score=147.22  Aligned_cols=192  Identities=18%  Similarity=0.268  Sum_probs=111.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC-ce-EEEEEEcC-ceeE--EEeee--eeeecCcCEEEEeCCceeEEEEEee
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR-EY-KVAWVKMI-TQTI--LSIHH--KVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~-~v~W~~~~-~~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+.+.. +..+.+.+|++++|.|.+.+.+ .+ .+.|+|.+ +..+  .....  .......|+..... ...++|.|.+
T Consensus        20 ~~~v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~-~~~~~L~I~~   97 (234)
T 2j6e_L           20 QSVLTQ-PPSASGTPGQRVTISCSGSSSNIGSNYVYWYQQLPGTAPKLLIYRNNQRPSGVPDRFSGSKS-GTSASLAISG   97 (234)
T ss_dssp             CCCCBC-CSCCCBCTTCEEEEEEECCTTTTTTSCCEEEEECSSSCCEEEEBTTTBCCSSSCTTEEEEEE-TTEEEEEEES
T ss_pred             ccEEeC-CCcEEeeCCCcEEEEEEecCCCCCCCeEEEEEecCCCCcEEEEECccccCCCccccEEEEec-CCeEEEEECC
Confidence            344444 7778899999999999998743 33 79999964 2211  11000  00111346665542 2345899999


Q ss_pred             ecCCCCeEEEEEEecCCCc----ceeEEEEEE----eCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCC
Q psy15734         94 VQETDRGWYMCQINTVPMT----SQKGYLQVV----VPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRRED  163 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~~----~~~~~l~v~----~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~  163 (314)
                      ++.+|+|.|+|.+.+....    .....|.|.    .+|.+....  ......+|+.++|.|.+.+. |+ +.+.|++ +
T Consensus        98 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~--~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k-~  174 (234)
T 2j6e_L           98 LRSEDEADYYCATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFP--PSSEELQANKATLVCLISDFFPGAVTVAWKA-D  174 (234)
T ss_dssp             CCSTTCSEEEEEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEEC--CCHHHHTTSCCCEEECCCBCSSCCCEEEEEE-T
T ss_pred             CCHHHCEEEEEEEEcCCcceeEecCCEEEEEecCCCCCCcccccC--CChhHhcCCceEEEEEEEEEcCCceEEEEEE-C
Confidence            9999999999999765431    112334442    233333221  11112245666777766664 32 2666666 4


Q ss_pred             CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-eeeE-eeCCeeeEEEEEEe
Q psy15734        164 GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-EDSR-LINGYSCHMTLKIR  241 (314)
Q Consensus       164 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~-~~~~~~~~s~L~i~  241 (314)
                      +..+.                                                  ..... .... .++.|...+.|.|.
T Consensus       175 g~~l~--------------------------------------------------~~~~~~~~~~~~~~~~~~~s~L~i~  204 (234)
T 2j6e_L          175 GAPVK--------------------------------------------------AGVETTKPSKQSNNKYAASSYLSLT  204 (234)
T ss_dssp             TEECC--------------------------------------------------SSEEECCCCCCTTSCCBCCEEECCC
T ss_pred             CEECC--------------------------------------------------CCccccCceECCCCCEEEEEEEEEC
Confidence            33221                                                  10000 0000 11123344689999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCceeEEE
Q psy15734        242 SILSHQFGSYRCVAVNALGETDGFIK  267 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~~~~  267 (314)
                      ++..+|+|.|+|.|.|..+...+++.
T Consensus       205 ~~~~~d~G~Y~C~a~n~~~~~~~~~~  230 (234)
T 2j6e_L          205 PEQWKSHRSYSCQVTHEGSTVEKTVA  230 (234)
T ss_dssp             GGGTTTSCCEEEEEEBTTBCCCEEEC
T ss_pred             HHHcCCCCeEEEEEEeCCCceEEecc
Confidence            99999999999999999877655543

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=99.81  E-value=8.9e-19  Score=142.91  Aligned_cols=192  Identities=17%  Similarity=0.286  Sum_probs=115.4

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCce----eEEEee------eeeeecCcCEEEEeC-CceeEEE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMITQ----TILSIH------HKVVTQNKRVSITFN-DHRSWFL   89 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~----~~~~~~------~~~~~~~~~~~~~~~-~~~~~~L   89 (314)
                      .+.. +..+.+.+|++++|.|.+.+.  +.+.+.|+|....    .+....      ........|+.+..+ ....++|
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL   81 (280)
T 3fku_X            3 QLVQ-SGAEVKKPGSSVKVSCTSSEVTFSSFAISWVRQAPGQGLEWLGGISPMFGTPNYAQKFQGRVTITADQSTRTAYM   81 (280)
T ss_dssp             CEEC-CCCCEECTTCCEEEEEEECCSCCTTSCEEECCBCSSSCCCCCEEECTTTCCEEECGGGTTTCEEEEETTTTEEEE
T ss_pred             eEEc-CCCEEECCCCcEEEEEEeeccCCCCeEEEEEEeCCCCCCEEEEEEeccCCccccCcccCCcEEEEEeCCCCEEEE
Confidence            3444 678899999999999999764  5579999985311    111111      001112357777643 3345689


Q ss_pred             EEeeecCCCCeEEEEEEecC----------CCcceeEEEEEEe---------------CCceeeecCcceeEEecCceEE
Q psy15734         90 HLRDVQETDRGWYMCQINTV----------PMTSQKGYLQVVV---------------PPRILLDRTSTDVVVREGTEVT  144 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~----------~~~~~~~~l~v~~---------------~p~~~~~~~~~~~~~~~g~~~~  144 (314)
                      .|.+++.+|+|.|+|.+.+.          ........|.|..               ++.+...  +. ..+.+|++++
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~g~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~--p~-~~v~~G~~v~  158 (280)
T 3fku_X           82 DLRSLRSEDTAVYYCARSPSYICSGGTCVFDHWGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQP--PS-VSKGLRQTAT  158 (280)
T ss_dssp             EECSCCSTTCEECCEEECSSSSSSSTTCCCCEECCCCEEEECC--------------CCCSBBCC--SE-EEECTTCCEE
T ss_pred             EECCCChhhCEEEEEEEecCCccccccccccEECCCEEEEEcCCCCccCCCCCCceEeeeEEEeC--Cc-EEEecCCCEE
Confidence            99999999999999999654          1112234566655               2222221  23 6788888999


Q ss_pred             EEEEecc-cC-CCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc
Q psy15734        145 LECSAVG-YP-EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD  222 (314)
Q Consensus       145 l~C~~~~-~p-~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~  222 (314)
                      |.|.+.+ .+ .+.+.|++.....                         .           ...+.+.. .........+
T Consensus       159 L~C~~~~~~~~~~~v~W~r~~~~~-------------------------~-----------~~~l~~~~-~~~~~~~~~r  201 (280)
T 3fku_X          159 LTCTGNSNNVGNQGAAWLQQHQGH-------------------------P-----------PKLLSYRN-NDRPSGISER  201 (280)
T ss_dssp             EEEECCCCCCCTTCCEEEEECSSS-------------------------C-----------CEESCCTT-CCCCSSSCTT
T ss_pred             EEEEecCCCCCCceEEEEEECCCC-------------------------C-----------CEEEEEec-cccCCCCCCC
Confidence            9998877 33 3688888732110                         0           00000000 0000011123


Q ss_pred             eeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        223 YEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       223 ~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +..... .   ....|.|.+++.+|+|.|+|.+.|..
T Consensus       202 ~~~~~~-~---~~~~L~I~~v~~~DsG~Y~C~~~~~~  234 (280)
T 3fku_X          202 FSASRS-G---NTASLTITGLQPEDEADYYCSTWDSS  234 (280)
T ss_dssp             EEEEEE-T---TEEEEEECSCCGGGCSEEEEEEEETT
T ss_pred             EEEEcc-C---CEEEEEECCCCHHHCEEEEEEEecCC
Confidence            332221 1   12479999999999999999999976

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=99.81  E-value=1.9e-18  Score=140.07  Aligned_cols=140  Identities=18%  Similarity=0.296  Sum_probs=85.5

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCC-----ceEEEEEEcC-cee---EEEeeee-eeecCcCEEEEeCCceeEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLR-----EYKVAWVKMI-TQT---ILSIHHK-VVTQNKRVSITFNDHRSWFL   89 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-----~~~v~W~~~~-~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~L   89 (314)
                      ..+.+...+..+.+.+|++++|.|.+.+.+     .+.+.|++.+ +..   +...... ......|+.+... ...++|
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~r~~~~~~-~~~~~L   92 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSLVHSNGNTYLRWYLQKPGQSPKVLIYKVSNRVSGVPDRFSGSGS-GTDFTL   92 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-TTEEEE
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCcccccCCceEEEEEECCCCCCEEEEEecCCCCCCCcccEEEEcC-CCEEEE
Confidence            346677778888999999999999998765     4799999864 221   1111000 0012457766542 234589


Q ss_pred             EEeeecCCCCeEEEEEEecCCC--cceeEEEEEEeCCc----------------------eeeecCcceeEEecCceEEE
Q psy15734         90 HLRDVQETDRGWYMCQINTVPM--TSQKGYLQVVVPPR----------------------ILLDRTSTDVVVREGTEVTL  145 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~~~~~--~~~~~~l~v~~~p~----------------------~~~~~~~~~~~~~~g~~~~l  145 (314)
                      .|.+++.+|+|.|+|.+.+...  ......|.|..++.                      +... .+....+.+|+.++|
T Consensus        93 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~p~~pp~~~~~~~~~~~~~~v~~~-~~~~~~v~~G~~v~L  171 (268)
T 1x9q_A           93 KINRVEAEDLGVYFCSQSTHVPWTFGGGTKLEIKSSADDAKKDAAKKDDAKKDDAKKDGGVKLD-ETGGGLVQPGGAMKL  171 (268)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEC------------------------CGGGCEEE-EECCEEECTTCCEEE
T ss_pred             EECCCChhHCEEEEEEEecCCCceEcCCEEEEEccCccCCCccccccccccccccccccceEEE-CCCceEecCCCcEEE
Confidence            9999999999999999976422  12334566654322                      0111 123445667777777


Q ss_pred             EEEecccCC--CceEEEc
Q psy15734        146 ECSAVGYPE--PYVAWRR  161 (314)
Q Consensus       146 ~C~~~~~p~--p~~~W~~  161 (314)
                      .|.+.+.+.  +.+.|++
T Consensus       172 ~C~~~~~~~~~~~v~W~k  189 (268)
T 1x9q_A          172 SCVTSGFTFGHYWMNWVR  189 (268)
T ss_dssp             EEEEESSCGGGCEEEEEE
T ss_pred             EEEecCccccccEEEEEE
Confidence            777766542  5677776

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.81  E-value=8.2e-19  Score=141.46  Aligned_cols=182  Identities=19%  Similarity=0.264  Sum_probs=105.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEE---Eee----ee--eeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTIL---SIH----HK--VVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~---~~~----~~--~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+.+  .+.+.|+|.. +..+.   ...    ..  ......|+.+..+. ...++|.|.
T Consensus        11 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   90 (261)
T 2xqy_G           11 QQPGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKSSSTVYIQLS   90 (261)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCCCCEEEEEEc
Confidence            345678899999999999998765  5799999964 22211   110    00  01124577776542 335689999


Q ss_pred             eecCCCCeEEEEEEecCCC----cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcC
Q psy15734         93 DVQETDRGWYMCQINTVPM----TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRRE  162 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~----~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~  162 (314)
                      +++.+|+|.|.|.+.+...    ......|.|..    +|.+.... +. ..+..|+.++|.|.+.+. |.+ .+.|++ 
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~-p~-~~v~~g~~v~L~C~~~g~~P~~i~v~W~k-  167 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLA-PV-CGDTTGSSVTLGCLVKGYFPEPVTLTWNS-  167 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEEC-CC-CC--CCSEEEEEEEEEEEBSSCCEEEEGG-
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeC-CC-ccccCCCcEEEEEEEEeEeCCCCEEEEec-
Confidence            9999999999999976421    11223555543    23332221 11 123345556666655543 444 555555 


Q ss_pred             CCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEee
Q psy15734        163 DGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       163 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                                                                       ++..+..... .... ..+.|...+.|.|.+
T Consensus       168 -------------------------------------------------~g~~~~~~~~-~~~~-~~g~~~~~s~L~i~~  196 (261)
T 2xqy_G          168 -------------------------------------------------GSLSSGVHTF-PAVL-QSDLYTLSSSVTVTS  196 (261)
T ss_dssp             -------------------------------------------------GTCCTTEEEC-CCEE-ETTEEEEEEEEEEET
T ss_pred             -------------------------------------------------CCCcCceEec-Ccee-cCCcEEEEEEEEEec
Confidence                                                             3221100000 0011 112344556999999


Q ss_pred             cCCCCCeEEEEEEeeCCCCc
Q psy15734        243 ILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +..+| |.|+|.|.|.....
T Consensus       197 ~~~~~-g~YtC~v~n~~~~~  215 (261)
T 2xqy_G          197 STWPS-QSITCNVAHPASST  215 (261)
T ss_dssp             TTTTT-SCCEEEEEEGGGTE
T ss_pred             cccCC-CEEEEEEEECCCCc
Confidence            98888 99999999976543

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=99.81  E-value=1.4e-18  Score=142.53  Aligned_cols=136  Identities=18%  Similarity=0.333  Sum_probs=87.0

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-ee---EEEee------eeeeecCcCEEEEeC-CceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QT---ILSIH------HKVVTQNKRVSITFN-DHRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~---~~~~~------~~~~~~~~~~~~~~~-~~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+. ..   +....      ........|+.+..+ ....++|.|.+
T Consensus        28 ~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~  107 (291)
T 2gki_A           28 QSGPELVKPGASVKMSCKASGYTFTSYVMHWVKQKPGQGLEWIGYINPYNDGTKYNEKFKGKATLTSDKSSSTAYMELSS  107 (291)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECGGGBTTBCEEEEGGGTEEEEEECS
T ss_pred             cCCcEEecCCCCEEEEEeccCCcccccEEEEEEECCCCCcEEEEEEecCCCccccCcccCCCEEEEEeCCCCEEEEEECc
Confidence            45578999999999999998765  57899999642 11   11110      000112356665543 22346899999


Q ss_pred             ecCCCCeEEEEEEecCC-C-c----ceeEEEEEEeC-----------C---ceeeecCcceeEEecCceEEEEEEecccC
Q psy15734         94 VQETDRGWYMCQINTVP-M-T----SQKGYLQVVVP-----------P---RILLDRTSTDVVVREGTEVTLECSAVGYP  153 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~-~-~----~~~~~l~v~~~-----------p---~~~~~~~~~~~~~~~g~~~~l~C~~~~~p  153 (314)
                      ++.+|+|.|+|.+.+.. . .    .....|.|..+           +   .......+....+.+|++++|.|.+.+.+
T Consensus       108 v~~~DsG~Y~C~~~~~~~g~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~  187 (291)
T 2gki_A          108 LTSEDSAVYYCARGAYKRGYAMDYWGQGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSL  187 (291)
T ss_dssp             CCGGGCEEEEEEEECGGGTTCEEEECCCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCC
T ss_pred             CCHHHCEEEEEEEeccccccccceeCCCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcc
Confidence            99999999999997642 1 1    12235666551           1   11112224456788899999999888776


Q ss_pred             CC------ceEEEcC
Q psy15734        154 EP------YVAWRRE  162 (314)
Q Consensus       154 ~p------~~~W~~~  162 (314)
                      .+      .+.|++.
T Consensus       188 ~~~~~~~~~v~W~k~  202 (291)
T 2gki_A          188 FNSRTRKNYLAWYQQ  202 (291)
T ss_dssp             EETTTTEECEEEEEE
T ss_pred             ccccccceeEEEEEE
Confidence            54      8888883

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.81  E-value=6.8e-19  Score=132.64  Aligned_cols=120  Identities=13%  Similarity=0.111  Sum_probs=75.0

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeee----ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV----TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+.+.+|++++|.|.+.. +.+.+.|++.+. .+........    ...+|+.+..   .+++|.|.+++.+|+|.|.|
T Consensus         3 ~~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~-~i~~~~~~~~~~~~~~~~R~~~~~---~~~sL~I~~v~~~DsG~Y~C   77 (171)
T 1ccz_A            3 QQIYGVVYGNVTFHVPSNV-PLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYLDT---VSGSLTIYNLTSSDEDEYEM   77 (171)
T ss_dssp             EEEEEETTCCEEECCCCSS-CCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEECT---TTCCEEECSCCGGGCEEEEE
T ss_pred             cEEEEEcCCCEEEcCCCCC-CcceEEEEeCCc-EEEEEcCCCcccccccCCcEEEeC---CCCeEEECCCChhhCceEEE
Confidence            3578999999999999854 778999999554 3322111001    1123554421   23479999999999999999


Q ss_pred             EEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEc
Q psy15734        105 QINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR  161 (314)
Q Consensus       105 ~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~  161 (314)
                      .+.+... ...+.|.|.+++.....      ... .....|.|.+.+.|.|.+.|++
T Consensus        78 ~~~n~~~-~~~~~L~V~~~~~~p~i------~~~-~~~~~L~C~~~~~p~p~i~W~~  126 (171)
T 1ccz_A           78 ESPNITD-TMKFFLYVLEMVSKPMI------YWE-CSNATLTCEVLEGTDVELKLYQ  126 (171)
T ss_dssp             ECTTCCS-CEEEEEEEECCCCCCEE------EEE-TTTTEEEEECSSCSSCEEEEEE
T ss_pred             EEeCCCC-cEEEEEEEECcCCCCEE------EEe-cCCcEEEEEeCCCCCcEEEEEE
Confidence            9965533 66777888765322111      000 0012566666665666666665

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.81  E-value=1.7e-18  Score=137.05  Aligned_cols=85  Identities=18%  Similarity=0.349  Sum_probs=60.0

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEeeeee--e--e-cCcCEEEEeCC-ceeEEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIHHKV--V--T-QNKRVSITFND-HRSWFLHL   91 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~~~~--~--~-~~~~~~~~~~~-~~~~~L~i   91 (314)
                      +...+..+.+.+|++++|.|.+.+.  +...+.|||... .   .+.......  .  . ..+|+.+..+. ...++|.|
T Consensus         4 v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I   83 (230)
T 1ypz_F            4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (230)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             ccccCCEEEEeCCCcEEEEEEeeccccCccEEEEEEECCCCCCEEEEEEecCCeeecCcccCCeEEEEEcCCCCEEEEEE
Confidence            4556778999999999999999764  567899998642 1   122111100  0  1 34677776542 25568999


Q ss_pred             eeecCCCCeEEEEEEec
Q psy15734         92 RDVQETDRGWYMCQINT  108 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~  108 (314)
                      .+++.+|+|.|.|.+.+
T Consensus        84 ~~v~~~D~G~Y~C~~~~  100 (230)
T 1ypz_F           84 YSLEEEDEAIYYCSYGE  100 (230)
T ss_dssp             CSCCGGGCSEEEEEECC
T ss_pred             CcCChhhCEEEEEEEEC
Confidence            99999999999999965

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.80  E-value=1.2e-19  Score=142.55  Aligned_cols=183  Identities=15%  Similarity=0.233  Sum_probs=100.1

Q ss_pred             CCCceecCCcceE--EEcCCcEEEEEEecCC---C-ceEEEEEEcCceeEEEeeee--eeecCcCEEEEeCCceeEEEEE
Q psy15734         20 DMPRFAEPVANVT--ATVGKEALMACVVENL---R-EYKVAWVKMITQTILSIHHK--VVTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        20 ~~p~~~~~~~~~~--v~~g~~~~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      .+|.+...+....  +.+|++++|.|.+.+.   + .+.|.|+|++. .+......  ....++++..      ...|.|
T Consensus         8 ~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~------~~~L~I   80 (218)
T 2rgs_A            8 GGPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNV-EVHTAQTQTHREDYNSTIRV------VSTLPI   80 (218)
T ss_dssp             -CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTE-EECCCEEEEEEETTTTEEEE------EEEEEC
T ss_pred             CCCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCc-cccCcccccccccCCCeEEE------EEEEEE
Confidence            4455544333333  7899999999999875   3 37999999653 32211100  0111222222      237999


Q ss_pred             eeecCCCCeEEEEEEecCCCcc-eeEEE----EEEeCCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEEcCCC
Q psy15734         92 RDVQETDRGWYMCQINTVPMTS-QKGYL----QVVVPPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWRREDG  164 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~~~~~  164 (314)
                      .+++.+|+|.|+|.+.+..... ....+    .+..+|.+...+....  ..+|+.+.|.|.+.| +|.+ .+.|++   
T Consensus        81 ~~~~~~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k---  155 (218)
T 2rgs_A           81 QHQDWMSGKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAE--QLSRKDVSLTCLVVGFNPGDISVEWTS---  155 (218)
T ss_dssp             CHHHHHTTCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGG--GTTSSEEEEEEEEEEEBSSCCEEEEEE---
T ss_pred             cHHHcCCCCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChH--HhcCCceEEEEEEEeeeCCCcEEEEEE---
Confidence            9999999999999997753322 11111    2223444333221110  113555555555555 3433 555555   


Q ss_pred             ceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeec
Q psy15734        165 KAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSI  243 (314)
Q Consensus       165 ~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~  243 (314)
                                                                     ++. .+............++ |...+.|.|...
T Consensus       156 -----------------------------------------------~g~-~~~~~~~~~~~~~~~gt~~~~s~l~v~~~  187 (218)
T 2rgs_A          156 -----------------------------------------------NGH-TEENYKDTAPVLDSDGSYFIYSKLNMKTS  187 (218)
T ss_dssp             -----------------------------------------------TTE-EECCEEECCCEECTTSCEEEEEEEEEEHH
T ss_pred             -----------------------------------------------CCE-eccCceecccEECCCCCEEEEEEEEECHH
Confidence                                                           322 2211111111112222 555668888888


Q ss_pred             CCCCCeEEEEEEeeCCCCc
Q psy15734        244 LSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..+|.|.|+|.|.|.....
T Consensus       188 ~~~d~g~YtC~a~n~~l~~  206 (218)
T 2rgs_A          188 KWEKTDSFSCNVRHEGLKN  206 (218)
T ss_dssp             HHHHCSCEEEEEECTTSGG
T ss_pred             HcCCCCeEEEEEEcCCCCC
Confidence            7888999999999987543

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=99.80  E-value=1.9e-18  Score=137.53  Aligned_cols=85  Identities=14%  Similarity=0.175  Sum_probs=59.7

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeeee--ee--ecCcCEEEEeCCceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHHK--VV--TQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~~--~~--~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +..++..+.+.+|++++|.|.+.. +.+.+.|+|.+. ..   +......  ..  ....|+.+..+....++|.|.+++
T Consensus         2 v~q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~v~   80 (238)
T 1bec_A            2 VTQSPRNKVAVTGGKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASRPSQEQFSLILELAT   80 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEEEETTEEEECSCCTTCEEECCSSSEEEEEESSCC
T ss_pred             cccCCCeeEEeCCCcEEEEEEeCC-CCceEEEEEECCCCCEEEEEEEeCCCcccCCCccceEEEEecCCCEEEEEEecCC
Confidence            345677899999999999999954 578999999642 11   1111100  00  124577766543455689999999


Q ss_pred             CCCCeEEEEEEecC
Q psy15734         96 ETDRGWYMCQINTV  109 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~  109 (314)
                      .+|+|.|.|.+.+.
T Consensus        81 ~~D~G~Y~C~~~~~   94 (238)
T 1bec_A           81 PSQTSVYFCASGGG   94 (238)
T ss_dssp             GGGCEEEEEEEESC
T ss_pred             cccCEEEEEEEecC
Confidence            99999999999764

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.80  E-value=1.7e-19  Score=140.57  Aligned_cols=178  Identities=14%  Similarity=0.208  Sum_probs=100.9

Q ss_pred             eecCCcceE-EEcCCcEEEEEEecCCC----ceEEEEEEcCceeEEEeeee--eeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         24 FAEPVANVT-ATVGKEALMACVVENLR----EYKVAWVKMITQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        24 ~~~~~~~~~-v~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ++.+|.... +.+|++++|.|.+.+.+    ...+.|+|++. .+......  ....++++..      ...|.|.+++.
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~------~~~L~I~~~~~   77 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDV-EVHTAQTKPREEQFNSTFRS------VSELPIMHQDW   77 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTE-EECCCEEECCCEETTTEEEE------EEEEECCHHHH
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCc-cccccccCCCcCcCCCcEEE------EEEEEEehhHc
Confidence            344555444 88999999999998763    35999999663 33211000  0011122211      23799999999


Q ss_pred             CCCeEEEEEEecCCCc-ceeEEE----EEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCceeec
Q psy15734         97 TDRGWYMCQINTVPMT-SQKGYL----QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKAINY  169 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~-~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~~~~  169 (314)
                      +|+|.|+|.+.+.... .....+    .+..+|.+...+....  ...|+.+.|.|.+.|. |. +.+.|++ ++..   
T Consensus        78 ~D~G~Y~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~--~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~---  151 (207)
T 2vol_A           78 LNGKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKE--QMAKDKVSLTCMITDFFPEDITVEWES-NGQP---  151 (207)
T ss_dssp             HTTCCEEEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTG--GGSSSEEEEEEEEEEEBSSCCEEEEEE-TTEE---
T ss_pred             CCCCEEEEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHH--HhcCCceEEEEEEeeEECCCCEEEEEE-CCEe---
Confidence            9999999999765332 121222    2334454433321111  1235666666666653 33 2566665 3322   


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~  248 (314)
                                                                     +............+ .|...+.|.|.....+|.
T Consensus       152 -----------------------------------------------l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~~~  184 (207)
T 2vol_A          152 -----------------------------------------------AENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAG  184 (207)
T ss_dssp             -----------------------------------------------CSCEEECCCEECTTSCEEEEEEEEEEHHHHSSC
T ss_pred             -----------------------------------------------ccCcccCCceECCCCCEEEEEEEEECHHHcCCC
Confidence                                                           11100011111222 255566889988888899


Q ss_pred             eEEEEEEeeCCCC
Q psy15734        249 GSYRCVAVNALGE  261 (314)
Q Consensus       249 G~Y~C~a~n~~g~  261 (314)
                      |.|+|.|.|....
T Consensus       185 g~ytC~a~n~~l~  197 (207)
T 2vol_A          185 NTFTCSVLHEGLH  197 (207)
T ss_dssp             CEEEEEEECTTSG
T ss_pred             CEEEEEEECCCCC
Confidence            9999999998654

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=99.80  E-value=5.1e-19  Score=142.18  Aligned_cols=83  Identities=14%  Similarity=0.367  Sum_probs=57.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeE---EEeee----ee--eecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTI---LSIHH----KV--VTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~---~~~~~----~~--~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.. +..+   .....    ..  ....+|+.+..+. ...++|.|.+
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~   85 (257)
T 3bn9_D            6 QSGGGLVKPGGSLRLSCAASGFTFSSYAMSWVRQAPGKGLEWVSAISGSGGSTYYADSVKGRFTISRDNSKNTLYLQMSS   85 (257)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGCCEEEEEECTTSCEEEEEEECSSSCCEEECGGGTTTEEEEEETTTTEEEEEEES
T ss_pred             ccCCEEEcCCCcEEEEEEeccccCCCceEEEEEECCCCCeEEEEEEecCCCceecCcccCCceEEEecCCCCEEEEEECC
Confidence            34567899999999999998754  5789999964 2211   11100    00  1124677776542 3456899999


Q ss_pred             ecCCCCeEEEEEEecC
Q psy15734         94 VQETDRGWYMCQINTV  109 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~  109 (314)
                      ++.+|+|.|.|.+.+.
T Consensus        86 v~~~DsG~Y~C~~~~~  101 (257)
T 3bn9_D           86 LRAEDTAVYYCARPYL  101 (257)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhhCEEEEEEEecC
Confidence            9999999999999764

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.79  E-value=2.3e-18  Score=134.90  Aligned_cols=133  Identities=22%  Similarity=0.353  Sum_probs=77.0

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-cee---EEEeee---eee--ecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMI-TQT---ILSIHH---KVV--TQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~---~~~~~~---~~~--~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      .+..+.+.+|++++|.|.+.+.+  .+.+.|+|.+ +..   +.....   ...  ...+|+.+..+. ...++|.|.++
T Consensus         6 qp~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~L~I~~v   85 (215)
T 1c5d_H            6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (215)
T ss_dssp             EECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETTTTEEEEEESSC
T ss_pred             cCCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCCCceEEEEECCC
Confidence            35567899999999999998753  5789999964 211   111100   000  123577766532 23568999999


Q ss_pred             cCCCCeEEEEEEecCC----CcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEc
Q psy15734         95 QETDRGWYMCQINTVP----MTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRR  161 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~  161 (314)
                      +.+|+|.|.|.+.+..    .......|.|..    +|.+.... + ...+..|+.+.|.|.+.+. |.| .+.|++
T Consensus        86 ~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~-~-~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  160 (215)
T 1c5d_H           86 QTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLA-P-GCGDTTSSTVTLGCLVKGYFPEPVTVTWNS  160 (215)
T ss_dssp             CGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEEC-C-CSSCCCCSSEEEEEEEEEEBSSCCEEEEGG
T ss_pred             CcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEecc-C-ChhhccCCcEEEEEEEeeeEcCCcEEEEcc
Confidence            9999999999996542    112234566552    23332221 0 1112345555555555543 444 555554

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=99.79  E-value=1.9e-18  Score=139.33  Aligned_cols=162  Identities=16%  Similarity=0.157  Sum_probs=115.8

Q ss_pred             cceeEEecCceEEEEEEecccCCC-ceEEEcCCCceeecCCeeC-------------------------------CCeEE
Q psy15734        132 STDVVVREGTEVTLECSAVGYPEP-YVAWRREDGKAINYNGELV-------------------------------PPMLT  179 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~p~p-~~~W~~~~~~~~~~~~~~~-------------------------------~p~~~  179 (314)
                      +....+.+|+.+.|.|.+.+.|.+ .+.|++ ++..+.......                               .+.+.
T Consensus         8 p~~~~v~~G~~v~l~C~~~~~~~~~~~~W~~-~g~~~~~~~~~l~i~~~~~~d~G~Y~C~~~~~~~s~~~~l~v~~~~~~   86 (262)
T 3rjd_A            8 PPWVSVFQEETVTLHCEVLHLPGSSSTQWFL-NGTATQTSTPSYRITSASVNDSGEYRCQRGLSGRSDPIQLEIHRGWLL   86 (262)
T ss_dssp             SCCSEEETTCCEEEEEECSSCCCTTCEEEEE-TTEECSCCSSEEEESSCCGGGCEEEEEEESSSCCCCCEEEEEECSSEE
T ss_pred             CCcEEeeCCCeEEEEEECCCCCCCceEEEEE-CCEEeeccCCeEEEecCCcccCeEEEEEEecCCccccEEEEEeccceE
Confidence            355678899999999999998888 999999 676654322111                               22223


Q ss_pred             cCCCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        180 IPNQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ..+....+.+|+.+.|.|.+ .+.|.+.+.|++++......        ..+     ..|.|.+++.+|+|.|+|.|.|.
T Consensus        87 ~~~~~~~~~~g~~v~l~C~~~~~~p~~~v~W~~~g~~~~~~--------~~~-----~~l~i~~~~~~d~G~Y~C~~~n~  153 (262)
T 3rjd_A           87 LQVSSRVFTEGEPLALRCHAWKDKLVYNVLYYRNGKAFKFF--------HWN-----SNLTILKTNISHNGTYHCSGMGK  153 (262)
T ss_dssp             EEESCSEEETTSCEEEEEEEGGGCCCEEEEEEETTEEEEEE--------EEC-----CCEEESSCCGGGCEEEEEEEESS
T ss_pred             ecCCCeEEecCCeEEEEEEccCCCCCceEEEEECCcccccc--------CCC-----CeEEEEECChhhCEEEEEEEeCC
Confidence            33445567899999999999 77888999999974433211        112     28999999999999999999999


Q ss_pred             CCCceeEEEEEEEecC-CCeeEEEE---ccccccEeEEEEEeeccC-CCccceE
Q psy15734        259 LGETDGFIKVYVNLVD-GDIFQIRK---MSRLHMGAYLCIASNGVV-PSVSHRI  307 (314)
Q Consensus       259 ~g~~~~~~~l~V~~~~-~~~~~~~~---~~~~~~g~~~C~a~~~~~-~~~~w~v  307 (314)
                      .+.....+.|.|.... .+.+....   +..++...++|.+.+.|. |.+.|.+
T Consensus       154 ~~~~~~~~~l~V~~~~~~p~~~~~~~~~~~~g~~~~l~C~~~~~p~~p~~~~~~  207 (262)
T 3rjd_A          154 HRYTSAGISVTVKELFPAPVLNASVTSPLLEGNLVTLSCETKLLLQRPGLQLYF  207 (262)
T ss_dssp             SEEEEECEEEEEECSSCCCEEEESSCSSEETTCCEEEEEECCCCCC-----EEE
T ss_pred             CCccccceEEEeccCCCCCeEeecCceeecCCCeEEEEeEcccCCCCCCccEEE
Confidence            9888888888888763 34444332   234455579999999987 7777765

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.79  E-value=5.1e-19  Score=122.16  Aligned_cols=95  Identities=21%  Similarity=0.240  Sum_probs=79.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+    .++|.|.++..+|+|.|+|.
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~-g~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   87 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKG-GQQLAASERLSFPADGA----EHGLLLTAALPTDAGVYVCR   87 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEECCEETT----EEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEEC-cccccceeeEEEeecCc----eEEEEEecCChhhCEEEEEE
Confidence            78888888889999999999999999999999999997 55555556665543322    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecC
Q psy15734        255 AVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~  274 (314)
                      |.|..|....++.|.|..+|
T Consensus        88 a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           88 ARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             EEETTEEEEEEEEEEEEC--
T ss_pred             EEECCCEEEEEEEEEEEcCC
Confidence            99999999999999987653

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=99.79  E-value=2.1e-18  Score=138.64  Aligned_cols=183  Identities=15%  Similarity=0.258  Sum_probs=105.5

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeeee----eeecCc-CEEEEeCCceeEEEEEeeec
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHHK----VVTQNK-RVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~~----~~~~~~-~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ..++..+.+.+|++++|.|.+.+.+.+.+.|||... ..   +......    .....+ |+.+..+....  |.|.+++
T Consensus         5 ~q~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~--L~I~~v~   82 (253)
T 3to4_D            5 EQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTE--LRLQVAN   82 (253)
T ss_dssp             EEECSEEEEESSCCEEEEEECSCTTCCCEEEEEEETTCCEEEEEEECSTTCEEEEEETTEEEEEECCSSSC--CEEEEES
T ss_pred             EeCCCeEEEeCCCcEEEEEEeCCCCcceEEEEEECCCCCcEEEEEECCCcceecCCccCCcEEEEeCCCCe--EEEccCC
Confidence            445778899999999999999887888999998421 11   1111100    001112 66665544333  9999999


Q ss_pred             CCCCeEEEEEEecCCC-------cceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEecc-cCCC-ceEEE
Q psy15734         96 ETDRGWYMCQINTVPM-------TSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVG-YPEP-YVAWR  160 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~-------~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~-~p~p-~~~W~  160 (314)
                      .+|+|.|+|.+.+...       ......|.|..      +|.+.... +....+..|+.+.|.|.+.+ +|.+ .+.|+
T Consensus        83 ~~DsG~Y~C~~~~~~~~~~~~~~~~~~t~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~i~v~W~  161 (253)
T 3to4_D           83 MSQGRTLYCTSSADHWTNTGQLYFGEGSKLTVLEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWW  161 (253)
T ss_dssp             CSSCEEEEEEEECSCCSTTCCEEECCCEEEEEESCSTTCBCCEEEEEE-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             hhhCeEEEEEEecCCCCcccceEECCCEEEEEecCCCCCCCCeEEEeC-CChhhcccCCceEEEEEEceEECCcEEEEEE
Confidence            9999999999964321       11122455542      23332211 11111223456666666665 3444 56666


Q ss_pred             cCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-------eeCCee
Q psy15734        161 REDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-------LINGYS  233 (314)
Q Consensus       161 ~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-------~~~~~~  233 (314)
                      + ++..+.                                                  .........       .++.|.
T Consensus       162 k-~g~~l~--------------------------------------------------~~~~~~~~~~~~~~~~~~g~~~  190 (253)
T 3to4_D          162 V-NGKEVH--------------------------------------------------SGVSTDPQPLKEQPALNDSRYA  190 (253)
T ss_dssp             E-TTEEEC--------------------------------------------------TTEEECSSCEESSTTCTTCCEE
T ss_pred             E-CCEECC--------------------------------------------------CceecccccccccccCCCCCEE
Confidence            6 433321                                                  110000000       122255


Q ss_pred             eEEEEEEeecCCCC-CeEEEEEEeeCCCC
Q psy15734        234 CHMTLKIRSILSHQ-FGSYRCVAVNALGE  261 (314)
Q Consensus       234 ~~s~L~i~~~~~~d-~G~Y~C~a~n~~g~  261 (314)
                      ..+.|.|.....+| .|.|+|.|.|..-.
T Consensus       191 ~~s~l~i~~~~~~d~~~~ytC~v~h~~l~  219 (253)
T 3to4_D          191 LSSRLRVSATFWQNPRNHFRCQVQFYGLS  219 (253)
T ss_dssp             EEEEEEEEHHHHTCTTCEEEEEEEECCBC
T ss_pred             EEEEEEECHHHhccCCCEEEEEEEeCCCC
Confidence            56789999998888 77999999997543

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=99.79  E-value=1.4e-18  Score=137.77  Aligned_cols=189  Identities=13%  Similarity=0.166  Sum_probs=104.6

Q ss_pred             CcceEEEcCCcEEEEEEecCC----CceEEEEEEcCc-e---eEEEee--ee----e--eecCcCEEEEeCC-ceeEEEE
Q psy15734         28 VANVTATVGKEALMACVVENL----REYKVAWVKMIT-Q---TILSIH--HK----V--VTQNKRVSITFND-HRSWFLH   90 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~-~---~~~~~~--~~----~--~~~~~~~~~~~~~-~~~~~L~   90 (314)
                      +..+.+.+|++++|.|.+.+.    ....|.|||... .   .+....  ..    .  ....+|+.+..+. ...++|.
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~i~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (232)
T 3qhz_H            7 SGPALVKPTQTLTLTCSFSGFSLSTSGMSVSWIRQPPGKALEWLALIDWDDDTYYITYSSSLKTRLTISKDTSKSQVVLT   86 (232)
T ss_dssp             ECCSEECTTSCEEEEEEEESCGGGCTTCEEEEEEECTTSCCEEEEEEESSSSCEEECCCTTTTTTEEEEEETTTTEEEEE
T ss_pred             CCCEEECCCCcEEEEEEEeCcccccceeEeEEEEECCCCCcEEEEEEECCCCccccccCccccCceEEEeccCCCEEEEE
Confidence            445779999999999999653    234559998532 1   111110  00    0  1123577776543 3556899


Q ss_pred             EeeecCCCCeEEEEEEecCC---------CcceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEecccCC--C
Q psy15734         91 LRDVQETDRGWYMCQINTVP---------MTSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGYPE--P  155 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~~---------~~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~--p  155 (314)
                      |.+++.+|+|.|.|.+.+..         .......|.|..    +|.+....  ....+..|+.+.|.|.+.+.++  .
T Consensus        87 I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~~~~P~~~  164 (232)
T 3qhz_H           87 MTNMDPVDTATYYCARTLRVSGDYVRDFDLWGRGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPV  164 (232)
T ss_dssp             ECSCCGGGCEEEEEEEECCC---CCCCCCEECCCEEEEECSSCCBCCEEEEEC--C-------CEEEEEEEEEEEBSSCC
T ss_pred             ECcCChhhCEEEEEEEeeccCccccccceeeCCCeEEEEecCCCCCCEEEEec--ccccccCCCcEEEEEEEeeEeCCCe
Confidence            99999999999999997542         111223444431    23332211  1122334556666666555322  1


Q ss_pred             ceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeE
Q psy15734        156 YVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH  235 (314)
Q Consensus       156 ~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~  235 (314)
                      .+.|++                                                  ++......... .....++.|...
T Consensus       165 ~v~W~~--------------------------------------------------~g~~~~~~~~~-~~~~~~g~~~~~  193 (232)
T 3qhz_H          165 TVSWNS--------------------------------------------------GALTSGVHTFP-AVLQSSGLYSLS  193 (232)
T ss_dssp             EEEEGG--------------------------------------------------GTBCTTEEECC-CEECTTSCEEEE
T ss_pred             EEEEEE--------------------------------------------------CCEecceeecc-ceeCCCCCEEEE
Confidence            344555                                                  22110000000 001112235556


Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.+....| |.|+|.|.|..+.......|.+
T Consensus       194 s~L~i~~~~~~~-g~ytC~v~~~~~~~~~~~~l~~  227 (232)
T 3qhz_H          194 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKRVEP  227 (232)
T ss_dssp             EEEEEEGGGGGT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEEchhhcCC-CEEEEEEEeCCCCccEEEEeCC
Confidence            799999999999 9999999999877666655543

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.79  E-value=5.4e-18  Score=128.74  Aligned_cols=122  Identities=11%  Similarity=0.124  Sum_probs=74.8

Q ss_pred             CcceEEEcCCcEEEEEEec--CCCceEEEEEE--cCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         28 VANVTATVGKEALMACVVE--NLREYKVAWVK--MITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~--~~~~~~v~W~~--~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      ...+.+.+|++++|.|...  +.+.+.+.|++  ++. .+.....  .....+.|+.+..+    ++|.|.+++++|+|.
T Consensus         6 ~~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~-~i~~~~~~~~~~~~~~R~~~~~n----gsL~I~~v~~~DsG~   80 (182)
T 1hnf_A            6 ALETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKK-KIAQFRKEKETFKEKDTYKLFKN----GTLKIKHLKTDDQDI   80 (182)
T ss_dssp             CEEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCC-EEEEECGGGCEEESCTTEEECTT----SCEEECSCCGGGCEE
T ss_pred             ccEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCc-EEEEEeCccCCCCCCCeEEECCC----CCEEECCCChhhCEE
Confidence            5678899999999999542  24568999999  543 2321110  01123567766543    379999999999999


Q ss_pred             EEEEEecCCCc---ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEc
Q psy15734        102 YMCQINTVPMT---SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR  161 (314)
Q Consensus       102 Y~C~~~~~~~~---~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~  161 (314)
                      |+|.+.+....   ...+.|.|..+....      .... .+..+.|.|.+.+.|.|.+.|++
T Consensus        81 Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P------~i~~-~~~~v~L~C~~~~~p~~~~~W~~  136 (182)
T 1hnf_A           81 YKVSIYDTKGKNVLEKIFDLKIQERVSKP------KISW-TCINTTLTCEVMNGTDPELNLYQ  136 (182)
T ss_dssp             EEEEEEETTSCEEEEEEEEEEEECCCCCC------EEEE-ETTTTEEEEECSSCSSCEEEEEE
T ss_pred             EEEEEEeCCCceeEEEEEEEEEcCcCCCC------EEEE-ccCcEEEEeEccCCCCCEEEEEE
Confidence            99999765322   234566766532110      1111 22345666666665555666665

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=99.78  E-value=1.8e-18  Score=138.94  Aligned_cols=189  Identities=16%  Similarity=0.275  Sum_probs=109.5

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeeee-e-e--ecCcCEEEEeCCceeEEEEEee
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHHK-V-V--TQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~~-~-~--~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      +.+..++..+.+.+|++++|.|.+.. +.+.+.|++... ..   +...... . .  ....|+.+.......++|.|.+
T Consensus         4 ~~v~q~p~~v~v~~G~~v~L~C~~~~-~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~L~I~~   82 (252)
T 1oga_E            4 GGITQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTS   82 (252)
T ss_dssp             -CEECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECS
T ss_pred             ccceEcCCeEEEcCCCcEEEEEEeCC-CCCEEEEEEECCCCCeEEEEEEccCccccCCccCCcEEEEecCCCEEEEEECc
Confidence            44566788899999999999999954 568999999642 11   1111000 0 0  1235777654333445899999


Q ss_pred             ecCCCCeEEEEEEecCC----CcceeEEEEEEe------CCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEc
Q psy15734         94 VQETDRGWYMCQINTVP----MTSQKGYLQVVV------PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRR  161 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~----~~~~~~~l~v~~------~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~  161 (314)
                      ++.+|+|.|.|.+.+..    .......|.|..      +|.+.... +....+..|+.+.|.|.+.+. |.+ .+.|++
T Consensus        83 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~~  161 (252)
T 1oga_E           83 AQKNPTAFYLCASSSRSSYEQYFGPGTRLTVTEDLKNVFPPEVAVFE-PSEAEISHTQKATLVCLATGFYPDHVELSWWV  161 (252)
T ss_dssp             CCSCCCEEEEEEEESSTTSCCEECCCEEEEEESCGGGCBCCEEEEEC-CCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CChhhCEEEEEEEecCCccceeECCCEEEEEecccCCCCCCeEEEEC-CChhhhccCCceEEEEEEeeEcCCCcEEEEEE
Confidence            99999999999997641    111223455543      33332221 111122345666666666653 432 566665


Q ss_pred             CCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee------ee-EeeCCeee
Q psy15734        162 EDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE------DS-RLINGYSC  234 (314)
Q Consensus       162 ~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~------~~-~~~~~~~~  234 (314)
                       ++..+                                                  .......      .. ..++.|..
T Consensus       162 -~g~~l--------------------------------------------------~~~~~~~~~~~~~~~~~~~gt~~~  190 (252)
T 1oga_E          162 -NGKEV--------------------------------------------------HSGVSTDPQPLKEQPALNDSRYSL  190 (252)
T ss_dssp             -TTEEE--------------------------------------------------CSSEEECSSCEESCTTSTTCCEEE
T ss_pred             -CCEEC--------------------------------------------------CCCcccccccccccccCCCCCEEE
Confidence             33322                                                  1110000      00 01222555


Q ss_pred             EEEEEEeecCCC-CCeEEEEEEeeCCCCce
Q psy15734        235 HMTLKIRSILSH-QFGSYRCVAVNALGETD  263 (314)
Q Consensus       235 ~s~L~i~~~~~~-d~G~Y~C~a~n~~g~~~  263 (314)
                      .+.|.|...... |.|.|+|.|.|......
T Consensus       191 ~s~L~i~~~~~~d~~~~ytC~v~~~~l~~~  220 (252)
T 1oga_E          191 SSRLRVSATFWQNPRNHFRCQVQFYGLSEN  220 (252)
T ss_dssp             EEEEEEEHHHHTCTTCEEEEEEEECCBCTT
T ss_pred             EEEEEECHHHhccCCCEEEEEEEcCCCCCC
Confidence            678999887765 57899999999876554

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=99.78  E-value=1.3e-18  Score=142.56  Aligned_cols=176  Identities=20%  Similarity=0.240  Sum_probs=120.3

Q ss_pred             CCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe-----------eC-----------------
Q psy15734        123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE-----------LV-----------------  174 (314)
Q Consensus       123 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~-----------~~-----------------  174 (314)
                      +|.+...  +....+.+|+.+.|.|.+.+.|. .+.|++.++..+.....           +.                 
T Consensus         4 ~p~v~~~--~~~~~v~~G~~v~l~C~~~~~p~-~v~W~~~~g~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~~~   80 (291)
T 2wim_A            4 LLQVTIS--LSKVELSVGESKFFTCTAIGEPE-SIDWYNPQGEKIISTQRVVVQKEGVRSRLTIYNANIEDAGIYRCQAT   80 (291)
T ss_dssp             CCEEEES--CSEEEEETTCCEEEEEEEESCCS-EEECBCTTCCBCCCBTTEEEEEETTEEEEEECSCCGGGCEEEEEEEE
T ss_pred             CceEEEe--ccceEecCCCcEEEEEEEeCCCC-ceEEECCCCcCccCCCcEEEecCCCEEEEEEccCCcccCEEEEEEEe
Confidence            3444443  35678899999999999998774 89999865554432211           00                 


Q ss_pred             -----------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEE
Q psy15734        175 -----------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       175 -----------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (314)
                                       +|.+...+....+.+|+++.|.|.+.+.|.+.+.|++++..... ....+.....++     .
T Consensus        81 n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~-----~  154 (291)
T 2wim_A           81 DAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT-ISDNRFAMLANN-----N  154 (291)
T ss_dssp             CSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEEEEECC----CB-CCCSSEEECTTS-----C
T ss_pred             cccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEEEEEECCccccc-cCCceEEEccCC-----C
Confidence                             34444445566789999999999999999999999997544332 122222223344     8


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCCCce--eEEEEEEEecCCCeeE----EEEccccccEeEEEEEeeccCCCccceE
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALGETD--GFIKVYVNLVDGDIFQ----IRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g~~~--~~~~l~V~~~~~~~~~----~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|.++..+|+|.|+|.|.|..+...  ..+.+.|..+|.....    ...+..++...+.|.+.+.|.|.+.|..
T Consensus       155 L~i~~v~~~d~G~Y~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v~W~~  230 (291)
T 2wim_A          155 LQILNINKSDEGIYRCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR  230 (291)
T ss_dssp             EEETTCCGGGCEEEEEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEEEEEE
T ss_pred             EEEEecchhhCEEEEEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeEEEEE
Confidence            99999999999999999999886543  4556666655432211    1123345556799999999999999964

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=99.78  E-value=2.2e-18  Score=137.24  Aligned_cols=83  Identities=16%  Similarity=0.275  Sum_probs=56.6

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCc-e---eEEEee------e-----eeeecCcCEEEEeCC-ce
Q psy15734         26 EPVANVTATVGKEALMACVVENLR----EYKVAWVKMIT-Q---TILSIH------H-----KVVTQNKRVSITFND-HR   85 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~-~---~~~~~~------~-----~~~~~~~~~~~~~~~-~~   85 (314)
                      .++..+.+.+|++++|.|.+.+.+    ...+.||+... .   .+....      .     ......+|+.+..+. ..
T Consensus         5 ~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   84 (239)
T 3tv3_H            5 QESGPTLVEASETLSLTCAVSGDSTAACNSFWGWVRQPPGKGLEWVGSLSHCASYWNRGWTYHNPSLKSRLTLALDTPKN   84 (239)
T ss_dssp             EEESCSEECTTSCEEEEEEEESSCTTSSSCEEEEEEECTTSCCEEEEEEECCCCTTSSCEEEECTTTGGGEEEEEEGGGT
T ss_pred             ecCCCEEEcCCCCEEEEEEEcCCcccccceEEEEEEECCCCCcEEEEEEecccccccCCceecCccccCCEEEEEECCCC
Confidence            345578899999999999997644    45899999532 1   111111      0     000123577776542 34


Q ss_pred             eEEEEEeeecCCCCeEEEEEEec
Q psy15734         86 SWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        86 ~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      .++|.|.+++.+|+|.|.|.+.+
T Consensus        85 ~~~L~I~~v~~~DsG~Y~C~~~~  107 (239)
T 3tv3_H           85 LVFLKLNSVTAADTATYYCARFG  107 (239)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEEECCCChhhCEEEEEEEec
Confidence            56899999999999999999854

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.78  E-value=1.3e-16  Score=141.13  Aligned_cols=226  Identities=16%  Similarity=0.193  Sum_probs=129.9

Q ss_pred             cCCcEEEEEEecCC-Cc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCCCc
Q psy15734         35 VGKEALMACVVENL-RE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMT  112 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~  112 (314)
                      .|+.+.|.|.+.+. |. ..+.|++++..............++.+.+.      ..|.|.+.... .|.|+|.+.+....
T Consensus       149 ~~~~v~L~C~~~g~~P~p~~v~W~~~~~~~~~~~~~~~~~~~g~~~~~------s~L~i~~~~~~-~g~ytC~v~n~~~~  221 (512)
T 1zvo_C          149 DNSPVVLACLITGYHPTSVTVTWYMGTQSQPQRTFPEIQRRDSYYMTS------SQLSTPLQQWR-QGEYKCVVQHTASK  221 (512)
T ss_pred             CCCeEEEEEEEEeeecCceEEEEEcCcccCceEecCceecCCCCEEEE------EEEEEcHHHcC-CceEEEEEEeCCCC
Confidence            46899999999885 54 489999954221111011111112333332      26888888777 89999999775322


Q ss_pred             -ceeE-----------EEEEEeCCc----------------------------------------------------eee
Q psy15734        113 -SQKG-----------YLQVVVPPR----------------------------------------------------ILL  128 (314)
Q Consensus       113 -~~~~-----------~l~v~~~p~----------------------------------------------------~~~  128 (314)
                       ....           .+.+..+|.                                                    +..
T Consensus       222 ~~~~~~~~~~~~~~~~~v~l~~pp~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~h~~~~~~~~~~~~~~~~p~v~~  301 (512)
T 1zvo_C          222 SKKEIFRWPESPKAQASSVPTAQPQAEGSLAKATTAPATTRNTGRGGEEKKKEKEKEEQEERETKTPECPSHTQPLGVYL  301 (512)
T ss_pred             ceEEEecCCCCCCcCCEEEEeCCCchhccccccccCchhhccCcccccceeccCCcccccccCcccccCCCCCCCCEEEE
Confidence             2222           233433332                                                    222


Q ss_pred             ecCcceeEEecCceEEEEEEecccCC--CceEEEcCCCceee-----------cCCeeC---------------------
Q psy15734        129 DRTSTDVVVREGTEVTLECSAVGYPE--PYVAWRREDGKAIN-----------YNGELV---------------------  174 (314)
Q Consensus       129 ~~~~~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~~~~~-----------~~~~~~---------------------  174 (314)
                      .+ +....+..|+.+.|.|.+.+.++  ..+.|++ ++..+.           .++...                     
T Consensus       302 ~~-p~~~~~~~g~~~~L~C~v~g~~P~~~~i~W~k-~g~~~~~~~~~~~~~~~~~gt~~~~s~L~i~~~~~~d~g~y~C~  379 (512)
T 1zvo_C          302 LT-PAVQDLWLRDKATFTCFVVGSDLKDAHLTWEV-AGKVPTGGVEEGLLERHSNGSQSQHSRLTLPRSLWNAGTSVTCT  379 (512)
T ss_pred             EC-CChHHhccCCceEEEEEEeceECCCeEEEEEE-CCEeccCceeccceecCCCCeEEEEEEEEEchHHhcCCCeEEEE
Confidence            21 22233557999999999998633  3899999 554432           011100                     


Q ss_pred             -------CC--eEEcC-------CCcceee----cCccEE-EEEEEeecCCc--eeEEecCCCeeeecCCce--eeeEee
Q psy15734        175 -------PP--MLTIP-------NQLEGAF----VSQTVE-LHCHTEAFPAS--LNYWTNEKGDMIITGDDY--EDSRLI  229 (314)
Q Consensus       175 -------~p--~~~~~-------~~~~~v~----~g~~~~-l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~--~~~~~~  229 (314)
                             .+  .+...       +..+.+.    .|+.+. |.|.+.|++++  .+.|++++. .+......  ......
T Consensus       380 a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~~~~~~~~L~C~~~g~~P~~i~v~W~k~g~-~~~~~~~~~~~~~~~~  458 (512)
T 1zvo_C          380 LNHPSLPPQRLMALREPAAQAPVKLSLNLLASSDPPEAASWLLCEVSGFSPPNILLMWLEDQR-EVNTSGFAPARPPPQP  458 (512)
T ss_pred             EEeCCCCCCceeEEeecCCCCCCCCEEEEEccCcCCCCceEEEEEEeeeCCCCcEEEEEECCe-ECcCccccccceeECC
Confidence                   11  01110       0111111    588899 99999996554  578999744 33222111  111222


Q ss_pred             CC--eeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee--EEEEEE
Q psy15734        230 NG--YSCHMTLKIRSILSHQFGSYRCVAVNALGETDG--FIKVYV  270 (314)
Q Consensus       230 ~~--~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V  270 (314)
                      ++  |...+.|.|.....+|.|.|+|.|.|.......  ...|.|
T Consensus       459 dg~~~~~~s~L~v~~~~~~~~g~YtC~v~h~~l~~~~~~~~~~~v  503 (512)
T 1zvo_C          459 GSTTFWAWSVLRVPAPPSPQPATYTCVVSHEDSRTLLNASRSLEV  503 (512)
T ss_pred             CCCEEEEEEEEEECchhcCCCCeEEEEEEecCCCCceEEEEEEEe
Confidence            33  666678999988888999999999998765443  344444

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.77  E-value=1.7e-18  Score=118.02  Aligned_cols=95  Identities=15%  Similarity=0.147  Sum_probs=76.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+......++.....+  ..++|.|.++..+|+|.|+|.
T Consensus         5 PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~   81 (100)
T 3knb_A            5 PPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCG-GRKIHSQEQGRFHIENTD--DLTTLIIMDVQKQDGGLYTLS   81 (100)
T ss_dssp             EEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEET-TEECCTTGGGTEEEEECS--SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC-ceEeeeeccceeeeeccc--ceEEEEEcCCCccCCEEEEEE
Confidence            67888888889999999999999999999999999997 444433333222222222  134899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|..+.++.|.|+.
T Consensus        82 a~N~~G~~~~~~~l~V~~   99 (100)
T 3knb_A           82 LGNEFGSDSATVNIHIRS   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEEE
Confidence            999999999999998864

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=99.77  E-value=1.1e-17  Score=132.35  Aligned_cols=189  Identities=17%  Similarity=0.240  Sum_probs=108.4

Q ss_pred             CcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-e---eEEEeee------eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVEN--LREYKVAWVKMIT-Q---TILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~---~~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      +..+.+.+|++++|.|.+.+  .....+.|||... .   .+.....      ......+|+.+..+. ...++|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (230)
T 3n9g_H            7 SGAEVRKPGASTKVSCKASGYTFTHYYMHWVRQAPGQGLEWMGIINPSGGSTTYAQKLQGRVTMTRDTSTSTVYMELSSL   86 (230)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             cCCEEEcCCCCEEEEEEeecceecCcEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEECCC
Confidence            34688999999999999965  2457899998532 1   1111110      011124678776544 35668999999


Q ss_pred             cCCCCeEEEEEEecCCC---------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-C-CCceEE
Q psy15734         95 QETDRGWYMCQINTVPM---------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-P-EPYVAW  159 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~---------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~~~W  159 (314)
                      +.+|+|.|.|.+.+...         ......|.|..    +|.+....  ....+..|+.+.|.|.+.+. | .+.+.|
T Consensus        87 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~--~~~~~~~g~~v~L~C~~~~~~P~~~~v~W  164 (230)
T 3n9g_H           87 RSEDTAVYYCARDWGSNYVWGSYPKYWGQGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVTVSW  164 (230)
T ss_dssp             CGGGCEEEEEEEECCCSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEC--CCCCCCTTCEEEEEEEEEEEBSSCCEEEE
T ss_pred             ChhhCEEEEEEEccCCCCcccccccccCCCEEEEEEecCCCCCEEEecC--CCccccCCCCEEEEEEEEeEECCCEEEEE
Confidence            99999999999965321         11222344431    22222211  11122355556666655543 2 223555


Q ss_pred             EcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEE
Q psy15734        160 RREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTL  238 (314)
Q Consensus       160 ~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L  238 (314)
                       .  +                                                 ............... ++.|...+.|
T Consensus       165 -~--~-------------------------------------------------~~~~~~~~~~~~~~~~~g~~~~~s~L  192 (230)
T 3n9g_H          165 -N--S-------------------------------------------------GALTSGVHTFPAVLQSSGLYSLSSVV  192 (230)
T ss_dssp             -G--G-------------------------------------------------GTBCTTEEECCCEECTTSCEEEEEEE
T ss_pred             -C--C-------------------------------------------------cccCCCeEeCCceECCCCCEEEEEEE
Confidence             2  1                                                 111000000000111 2235666799


Q ss_pred             EEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        239 KIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .|.....+| |.|+|.|.|..+.......|.|.
T Consensus       193 ~i~~~~~~~-~~ytC~v~h~~~~~~~~~~~~v~  224 (230)
T 3n9g_H          193 TVPSSSLGT-QTYICNVNHKPSNTKVDKRVEPK  224 (230)
T ss_dssp             EEESTTBTT-BCCEEEEEEGGGTEEEEEECCCC
T ss_pred             EECHHHcCC-CeEEEEEEECCCCcceEEEccCC
Confidence            999999999 99999999988776666655544

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=99.77  E-value=5e-18  Score=135.83  Aligned_cols=219  Identities=14%  Similarity=0.111  Sum_probs=109.4

Q ss_pred             cCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-eeEE---Eeee------eeeecCcCEEEEeCC-ceeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVEN--LREYKVAWVKMIT-QTIL---SIHH------KVVTQNKRVSITFND-HRSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~~~~---~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~   92 (314)
                      ..+..+.+.+|++++|.|.+.+  .+...+.|||... ..+.   ....      ......+|+.+..+. ....+|.|.
T Consensus         4 ~~~~~v~v~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~   83 (248)
T 3u2s_H            4 VESGGGVVQPGSSLRLSCAASGFDFSRQGMHWVRQAPGQGLEWVAFIKYDGSEKYHADSVWGRLSISRDNSKDTLYLQMN   83 (248)
T ss_dssp             EEECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ecCCCEEEeCCCCEEEEEEeccccCCccEEEEEEECCCCCcEEEEEEecCCCceecCcccCCcEEEEecCCCCEEEEEEC
Confidence            4566788999999999999975  2457899998542 1111   1000      001124677776543 345689999


Q ss_pred             eecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe
Q psy15734         93 DVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE  172 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~  172 (314)
                      +++.+|+|.|.|.+.+....... -............   .......|....|.........|.+.-...          
T Consensus        84 ~v~~~DsG~Y~C~~~~~~~~~~~-~~~~~~~~~~~~~---~~~~~~~~~~t~l~V~~~~~~~P~v~~~~~----------  149 (248)
T 3u2s_H           84 SLRVEDTATYFCVREAGGPDYRN-GYNYYDFYDGYYN---YHYMDVWGKGTTVTVSSASTKGPSVFPLAP----------  149 (248)
T ss_dssp             SCCGGGCEEEEEEEEEEECEEET-TEEEECGGGCCEE---EEEEEEECCCEEEEECSCCCBCCEEEEECC----------
T ss_pred             CCCHHHCEEEEEEEeCCCCcccc-ccccccccccccc---cccceeeCCCEEEEEcccCCCCCEEEEeCC----------
Confidence            99999999999998642100000 0000000000000   000001112222222211112222222210          


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeec-C-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeE
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAF-P-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~-p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                                 ...+..|+.+.|.|.+.+. | +..+.|++++......... .....++.|...+.|.|......| |.
T Consensus       150 -----------~~~~~~g~~~~L~C~~~~~~P~~~~v~W~~~g~~~~~~~~~-~~~~~~g~~~~~s~L~i~~~~~~~-~~  216 (248)
T 3u2s_H          150 -----------SSKSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTFP-AVLQSSGLYSLSSVVTVPSSSLGT-QT  216 (248)
T ss_dssp             -----------C------CEEEEEEEEEEEBSSCCEEEEGGGTBCTTEEECC-CEECTTSCEEEEEEEEEEGGGBTT-BC
T ss_pred             -----------CccccCCCcEEEEEEEeeEECCCeEEEEeECCccCceeecC-ceECCCCCEEEEEEEEEChhhcCC-Ce
Confidence                       0112345666666666553 3 2345566643211111000 011112236667799999998888 99


Q ss_pred             EEEEEeeCCCCceeEEEEEEE
Q psy15734        251 YRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      |+|.|.|..+.......|.+.
T Consensus       217 ytC~v~h~~~~~~~~~~l~~~  237 (248)
T 3u2s_H          217 YICNVNHKPSNTKVDKKVEPK  237 (248)
T ss_dssp             CEEEEEEGGGTEEEEEECCC-
T ss_pred             EEEEEEECCCCcceEEEEccC
Confidence            999999988766655555443

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.76  E-value=6.3e-17  Score=124.45  Aligned_cols=120  Identities=18%  Similarity=0.224  Sum_probs=87.2

Q ss_pred             CCcc-eEEEcCCcEEEEEEecCCCce--EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         27 PVAN-VTATVGKEALMACVVENLREY--KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        27 ~~~~-~~v~~g~~~~l~C~~~~~~~~--~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      ++.. +.|..|+++.|.|.+ +.+.+  .|.|++.+...            ++....   .....|.|.+++.+|+|.|.
T Consensus        12 pp~~~v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l------------~~~~~~---~~~~~L~I~~v~~~d~G~Y~   75 (210)
T 1gsm_A           12 PPEPVVAVALGASRQLTCRL-ACADRGASVQWRGLDTSL------------GAVQSD---TGRSVLTVRNASLSAAGTRV   75 (210)
T ss_dssp             SCCSEEEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT------------CCEEEE---SSEEEEEECSCCGGGCEEEE
T ss_pred             CCCCceEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc------------CcEEec---CCccEEEECccCcccCceEE
Confidence            4443 799999999999999 77767  99999854321            122111   12237999999999999999


Q ss_pred             EEEecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC----CceEEEcCCCcee
Q psy15734        104 CQINTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE----PYVAWRREDGKAI  167 (314)
Q Consensus       104 C~~~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~----p~~~W~~~~~~~~  167 (314)
                      |.+.+.+ .....+.|.|+.+|...... +.  ....|+.+ |.|.+.+. |.    +.+.|++ ++.++
T Consensus        76 C~a~n~~~~~~~~~~ltV~~~P~~~~i~-~~--~~~~g~~~-l~C~a~g~~P~~~~~lti~Wlk-~~~~L  140 (210)
T 1gsm_A           76 CVGSCGGRTFQHTVQLLVYAFPNQLTVS-PA--ALVPGDPE-VACTAHKVTPVDPNALSFSLLV-GGQEL  140 (210)
T ss_dssp             EEEEETTEEEEEEEEEEEEBCCSEEEEE-SS--SBCTTCCE-EEEEEEEEBCCCTTTEEEEEEE-TTEEC
T ss_pred             EEEEeCCCceEEEEEEEEEecCCCcEEc-cc--eEEeCCce-EEEEeCCCCCCCCCCcEEEEEE-CCEEc
Confidence            9997764 33557889999999876543 22  45677778 99999875 64    3799998 55544

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.76  E-value=3.3e-17  Score=128.30  Aligned_cols=187  Identities=16%  Similarity=0.144  Sum_probs=117.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.| ..+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+..      ....++.+...+. ...|.|.+++.+|
T Consensus        17 ~~~P~~-~~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g-~~l~~------~~~~~~~~~~~~~-~~~L~i~~~~~~d   87 (215)
T 3mtr_A           17 MYAPKL-QGPVAVYTWEGNQVNITCEVFAYPSATISWFRDG-QLLPS------SNYSNIKIYNTPS-ASYLEVTPDSEND   87 (215)
T ss_dssp             CEEEEE-ECCSEEEECTTCCEEEEEEEEEESCCEEEEEETT-EESSC------SSSCSEEEEEETT-EEEEEECCCSGGG
T ss_pred             ecCCcc-cCCceEEEECCCCEEEEEEEeecCCCEEEEEECC-eECCC------CCCccEEEecCCC-eeEEEEecCChhh
Confidence            346677 4566689999999999999999888999999954 33211      1123455543322 3489999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc----CCC--ceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY----PEP--YVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~----p~p--~~~W~~~~~~~~~~~~  171 (314)
                      +|.|+|.+.|. +.....+.|.|..+|......    .....+..+.|.|.....    |..  .+.|.+          
T Consensus        88 ~G~Y~C~a~n~~g~~~~~~~l~v~~~P~~p~~~----~~~~~~~~~~l~w~~p~~~~~~pi~~y~v~~~~----------  153 (215)
T 3mtr_A           88 FGNYNCTAVNRIGQESLEFILVQADTPSSPSID----QVEPYSSTAQVQFDEPEATGGVPILKYKAEWRA----------  153 (215)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEECCCCCCCEEE----EEEEETTEEEEEEECCSCCCSSCEEEEEEEEEE----------
T ss_pred             CeEEEEEEEECCCceEEEEEEEECCCCCCCcce----EEEEecceEEEEEecCCccCCCceEEEEEEEEE----------
Confidence            99999999775 445566677777666543221    112335566776653221    111  233443          


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE-eeCCeeeEEEEEEeecCCCCCeE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR-LINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                                                              ++...... ....... ....     .|.|.++...|.|.
T Consensus       154 ----------------------------------------~~~~~w~~-~~~~~~~~~~~~-----~l~i~~L~~~~~y~  187 (215)
T 3mtr_A          154 ----------------------------------------VGEEVWHS-KWYDAKEASMEG-----IVTIVGLKPETTYA  187 (215)
T ss_dssp             ----------------------------------------TTCCCCEE-EEEEHHHHHHHT-----EEEEECCCTTCEEE
T ss_pred             ----------------------------------------CCCCcccc-cccccccccccc-----cEEECCCCCCCEEE
Confidence                                                    21110000 0000000 0012     89999999999999


Q ss_pred             EEEEEeeCCCCceeEEEEEEEecC
Q psy15734        251 YRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      |+|.|.|..|....+..+.+..++
T Consensus       188 ~~~~A~N~~G~s~~S~~~~v~T~p  211 (215)
T 3mtr_A          188 VRLAALNGKGLGEISAASEFKTQP  211 (215)
T ss_dssp             EEEEEEESSCBCCCCCCEEEECCC
T ss_pred             EEEEEEeCCcccCcccceeeEecc
Confidence            999999999988766666665543

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=99.75  E-value=5.1e-17  Score=126.88  Aligned_cols=95  Identities=20%  Similarity=0.307  Sum_probs=76.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC-CCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS-HQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C  253 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.+.+.|++++..+.....++.+....++   .+.|.|.++.. +|+|.|+|
T Consensus         6 pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~~d~G~Y~C   82 (212)
T 2yd1_A            6 PPEIIRKPQNQGVRVGGVASFYCAARGDPPPSIVWRKNGKKVSGTQSRYTVLEQPGG---ISILRIEPVRAGRDDAPYEC   82 (212)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCTTSTTEEEEEETTT---EEEEEESSCCTTTTCSEEEE
T ss_pred             CCEEEcCCCceEEecCCEEEEEEEEccCCCCeEEEEECCEECCCCcceeEEEEcCCC---eEEEEEEecCCCCcCceEEE
Confidence            788888888899999999999999999999999999975443324455554433333   25899999999 99999999


Q ss_pred             EEeeCCCC-ceeEEEEEEEe
Q psy15734        254 VAVNALGE-TDGFIKVYVNL  272 (314)
Q Consensus       254 ~a~n~~g~-~~~~~~l~V~~  272 (314)
                      .|.|..|. ....+.|.|..
T Consensus        83 ~~~n~~g~~~~~~~~l~V~~  102 (212)
T 2yd1_A           83 VAENGVGDAVSADATLTIYE  102 (212)
T ss_dssp             EEECSSSCEEEEEEEEEEEC
T ss_pred             EEEeCCCCeEEeeEEEEEec
Confidence            99999998 67777887754

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=99.75  E-value=1.2e-17  Score=139.49  Aligned_cols=165  Identities=16%  Similarity=0.200  Sum_probs=113.2

Q ss_pred             ceeEEecCceEEEEEEeccc---------CCCceEEEcCCCceeec-------------------CC-eeC---------
Q psy15734        133 TDVVVREGTEVTLECSAVGY---------PEPYVAWRREDGKAINY-------------------NG-ELV---------  174 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~---------p~p~~~W~~~~~~~~~~-------------------~~-~~~---------  174 (314)
                      ....+.+|+.+.|.|.+.+.         |.+.+.|++ ++..+..                   .| .+.         
T Consensus        37 ~~v~v~eG~~v~L~C~~~~~~~~~~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~L~i~~v~~~D~Gs~Y~C~a~n~~g~  115 (329)
T 3oq3_B           37 MNDMAALGEPFSAKCPPIEDSLLSHRYNDKDNVVNWEK-IGKTRRPLNRRVKNGDLWIANYTSNDSHRRYLCTVTTKNGD  115 (329)
T ss_dssp             EEEEECTTSCEEECCHHHHCTTTGGGSCCTTCEEEEEE-CSSSCEECSTTEETTEEEESSCCGGGGGCCEEEEEECTTSC
T ss_pred             ceEEEECCCeEEEEccCCCCccccccccCCCCeeEEEE-CCCCccccCceeecceEEEcCCChHhCCCcEEEEEEeCCCc
Confidence            45568899999999999884         557899999 4432211                   11 111         


Q ss_pred             ------------CCeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe
Q psy15734        175 ------------PPMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       175 ------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                                  +|.+..+.....+.+|+++.|.|.+.|.| .|.+.|++++..+.....++..  . ++     .|.|.
T Consensus       116 ~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i~W~k~~~~l~~~~~~~~~--~-~~-----~L~I~  187 (329)
T 3oq3_B          116 CVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNITWYKNNQELIIDGTKYSQ--S-GQ-----NLIIH  187 (329)
T ss_dssp             EEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEEEEEETTEECCCSSSSEEE--E-TT-----EEEEC
T ss_pred             eeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceEEEEECCccCCCCCceEec--C-CC-----EEEEe
Confidence                        22222222333466799999999999999 9999999975544323333322  2 34     99999


Q ss_pred             ecCCCCCeEEEEEEeeC--CCCceeE----EEEEEEecCCCee--EE---EEccccccEeEEEEEeecc---CC-Cccce
Q psy15734        242 SILSHQFGSYRCVAVNA--LGETDGF----IKVYVNLVDGDIF--QI---RKMSRLHMGAYLCIASNGV---VP-SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~--~g~~~~~----~~l~V~~~~~~~~--~~---~~~~~~~~g~~~C~a~~~~---~~-~~~w~  306 (314)
                      ++..+|+|.|+|.|.|.  .|.....    +.|.|...+...+  ..   ..+..++...+.|.+.+.|   +| .+.|.
T Consensus       188 ~v~~~D~G~Y~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~v~~G~~~~l~C~~~g~p~~~~~i~v~W~  267 (329)
T 3oq3_B          188 NPELEDSGRYDCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLILDPKINVTIGEPANITCTAVSTSLLVDDVLIDWE  267 (329)
T ss_dssp             SCCGGGCEEEEEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEECCSEEEECTTSCEEEEEEEEETTCCTTCCEEEEE
T ss_pred             ecChhhCEEEEEEEEecccCCCceeEEEeeEEEEEECCCCCCCceecCCeeEEecCCCEEEEEEEEECCCCCCCcEEEEE
Confidence            99999999999999997  7666554    6677776553211  11   2344555667999999998   66 77885

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.74  E-value=4e-18  Score=135.58  Aligned_cols=180  Identities=14%  Similarity=0.228  Sum_probs=99.9

Q ss_pred             ceecCCcceE-EEcCCcEEEEEEecCC---Cce-EEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         23 RFAEPVANVT-ATVGKEALMACVVENL---REY-KVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        23 ~~~~~~~~~~-v~~g~~~~l~C~~~~~---~~~-~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .++.++.... +.+|++++|.|.+.+.   |.+ .+.|+++++........ .....++++..      ...|.|.+++.
T Consensus        18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------~s~L~I~~~~~   91 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRS------VSELPIVERDW   91 (239)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEE------EEEEECCHHHH
T ss_pred             EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEE------EEEEEEEhhHc
Confidence            3344554444 7899999999999875   544 89999966432111000 00111222221      23799999999


Q ss_pred             CCCeEEEEEEecCCCcc-eeEEE----EEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCceeec
Q psy15734         97 TDRGWYMCQINTVPMTS-QKGYL----QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKAINY  169 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~~~~  169 (314)
                      +|+|.|+|.+.+..... ....+    .+..+|.+...+...  ....|+.+.|.|.+.|. |. ..+.|++ ++..   
T Consensus        92 ~D~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~--~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~---  165 (239)
T 1i1c_A           92 LNGKTFKCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPK--EEMTQSQVSITCMVKGFYPPDIYTEWKM-NGQP---  165 (239)
T ss_dssp             HTTCCEEEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEE---
T ss_pred             cCCCeEEEEEecccCCCCcEEEEecCCCCCcCCEEEEECCCh--HHhcCCcEEEEEEEeeeECCCeEEEEEE-CCEE---
Confidence            99999999997653321 21122    222344443332111  11235556666666553 33 2556665 3322   


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQF  248 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~  248 (314)
                                                                     +............++ |...+.|.|.....+|.
T Consensus       166 -----------------------------------------------l~~~~~~~~~~~~dgt~~~~s~l~v~~~~~~~~  198 (239)
T 1i1c_A          166 -----------------------------------------------QENYKNTPPTMDTDGSYFLYSKLNVKKETWQQG  198 (239)
T ss_dssp             -----------------------------------------------CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTT
T ss_pred             -----------------------------------------------CCCceecCceECCCCCEEEEEEEEEChhhcCCC
Confidence                                                           111000111112222 55566888888777889


Q ss_pred             eEEEEEEeeCCCC
Q psy15734        249 GSYRCVAVNALGE  261 (314)
Q Consensus       249 G~Y~C~a~n~~g~  261 (314)
                      |.|+|.|.|....
T Consensus       199 g~YtC~v~n~~l~  211 (239)
T 1i1c_A          199 NTFTCSVLHEGLE  211 (239)
T ss_dssp             CCEEEEEECTTSG
T ss_pred             CEEEEEEECCCCC
Confidence            9999999998754

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=99.74  E-value=2.7e-17  Score=147.85  Aligned_cols=184  Identities=17%  Similarity=0.201  Sum_probs=113.6

Q ss_pred             CcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeee---eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         28 VANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHK---VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      .+.+.+.+|++++|.|.+ .+.+.+.+.|++++..........   ......|..+..+    ++|.|.+++.+|+|.|+
T Consensus       373 ~~~~~~~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~r~~~~~~----~~L~i~~v~~~D~G~Y~  448 (581)
T 3o3u_N          373 AQNITARIGEPLVLKCKGAPKKPPQRLEWKLNTGRTEAWKVLSPQGGGPWDSVARVLPN----GSLFLPAVGIQDEGIFR  448 (581)
T ss_dssp             CEEEEEETTSCEEECCTTCCSSSSCEEEEEEEETTSSSCEECCSCCSSGGGGTSEECTT----SCEEESSCCGGGCEEEE
T ss_pred             hcccceecCCcEEEeeeecCCCCCceEEEEEcCCeeEEEEecccCCCCCcCCcEEEcCC----ceEEEeccccccCeEEE
Confidence            346789999999999999 677888999999653211100000   0011234444332    27999999999999999


Q ss_pred             EEEecCCC-c-ceeEEEEEEeCCceeeecCcceeEEecCce-EEEEEEecc-cCCCceEEEcCCCceeecCCeeCCCeEE
Q psy15734        104 CQINTVPM-T-SQKGYLQVVVPPRILLDRTSTDVVVREGTE-VTLECSAVG-YPEPYVAWRREDGKAINYNGELVPPMLT  179 (314)
Q Consensus       104 C~~~~~~~-~-~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~-~~l~C~~~~-~p~p~~~W~~~~~~~~~~~~~~~~p~~~  179 (314)
                      |.+.+... . ...+.|.|..+|........... +..++. +.|.|.+.+ +|.|.+.|++ ++.++....        
T Consensus       449 C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~-~~~~~~~~~l~C~~~~~~P~~~i~W~~-~g~~l~~~~--------  518 (581)
T 3o3u_N          449 CQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASE-LTAGVPNKVGTCVSEGSYPAGTLSWHL-DGKPLVPNE--------  518 (581)
T ss_dssp             EEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSE-ECTTSCEEEEEEEEEEEBSCCEEEEEE-TTEECCTTS--------
T ss_pred             EEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcc-cccCCceeEEEEECCCCCCCCeEEEEE-CCEECCCCC--------
Confidence            99976533 3 45678888876554332222222 444444 456888877 5888888888 554432100        


Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeE--eeCCeeeEEEEEEeecCCCC-CeEEEEEEe
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSR--LINGYSCHMTLKIRSILSHQ-FGSYRCVAV  256 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~--~~~~~~~~s~L~i~~~~~~d-~G~Y~C~a~  256 (314)
                                                        +......   ....  ..+.|...++|.|.++.++| .|.|+|+|.
T Consensus       519 ----------------------------------~~~~~~~---~~~~~~~~g~y~~~s~L~i~~~~~~d~~~~y~C~~~  561 (581)
T 3o3u_N          519 ----------------------------------KGVSVKE---QTRRHPETGLFTLQSELMVTPARGGDPRPTFSCSFS  561 (581)
T ss_dssp             ----------------------------------TTEEEEE---EEEECTTTCCEEEEEEEEECCCTTSCSCCCEEEEEE
T ss_pred             ----------------------------------CeEEEEe---eeEEcCCCceEEEEEEEEEEeccccCCCceEEEEEe
Confidence                                              0000000   0001  12236677899999999554 789999999


Q ss_pred             eCCCCc
Q psy15734        257 NALGET  262 (314)
Q Consensus       257 n~~g~~  262 (314)
                      |..+..
T Consensus       562 n~~~~~  567 (581)
T 3o3u_N          562 PGLPRH  567 (581)
T ss_dssp             CSSCSS
T ss_pred             ccCCCC
Confidence            987544

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=99.74  E-value=4.2e-17  Score=128.71  Aligned_cols=81  Identities=17%  Similarity=0.296  Sum_probs=55.3

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEeee------eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      +..+.+.+|++++|.|.+.+.  +...+.|||... .   .+.....      ......+|+.+..+. ....+|.|.++
T Consensus         7 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~rq~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v   86 (226)
T 3mlr_H            7 SGGEVKQPGQSLKISCKSSGYNFLDSWIGWVRQIPGKGLEWIGIIYPDDSDAHYSPSFEGQVTMSVDKSISTAYLQWTTL   86 (226)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTBTTBEEEEEGGGTEEEEEESSC
T ss_pred             CCCEEEecCCCEEEEEEecCccccCCEEEEEEECCCCCcEEEEEEecCCCccccCcccCCcEEEEecCCCCEEEEEECCC
Confidence            336889999999999999652  457899999532 1   1111110      001123577776543 24568999999


Q ss_pred             cCCCCeEEEEEEec
Q psy15734         95 QETDRGWYMCQINT  108 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~  108 (314)
                      +.+|+|.|.|.+.+
T Consensus        87 ~~~DsG~Y~C~~~~  100 (226)
T 3mlr_H           87 QASDTGKYFCTRLY  100 (226)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             CcccCEEEEEeEcc
Confidence            99999999999854

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=99.74  E-value=6.3e-18  Score=140.25  Aligned_cols=175  Identities=13%  Similarity=0.120  Sum_probs=118.8

Q ss_pred             CCceeeecCcceeEEecCceEEEEEEeccc-CCCceEEEcCCCceeecCCeeC---------------------------
Q psy15734        123 PPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAINYNGELV---------------------------  174 (314)
Q Consensus       123 ~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~~~W~~~~~~~~~~~~~~~---------------------------  174 (314)
                      +|.+...   .+..+.+|+.+.|.|.+.+. |.+.+.|++ ++..+.......                           
T Consensus         7 ~P~~~~~---~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n   82 (317)
T 2y25_A            7 GPHFVEY---LSWEVTGECNVLLKCKVANIKKETHIVWYK-DEREISVDEKHDFKDGICTLLITEFSKKDAGIYEVILKD   82 (317)
T ss_dssp             CCEEEEE---EEEEEETTTEEEEEEEEESCCTTCEEEEEE-TTEEECCSCC-----CCEEEEETTCCSTTCSCEEEEEES
T ss_pred             CCcEeee---eeEEECCCCeEEEEEEEcCCCCCCEEEEEE-CCeEcCCCCcEEEECCeEEEEEccCCcccCeEEEEEEEC
Confidence            4555532   35778999999999999887 789999999 666655332111                           


Q ss_pred             ---------------CCeEEcCCCcceeecCccEEEEEEEee----------cCCceeEEecCCCeeeecCCceeeeEee
Q psy15734        175 ---------------PPMLTIPNQLEGAFVSQTVELHCHTEA----------FPASLNYWTNEKGDMIITGDDYEDSRLI  229 (314)
Q Consensus       175 ---------------~p~~~~~~~~~~v~~g~~~~l~C~~~g----------~p~p~~~W~~~~~~~~~~~~~~~~~~~~  229 (314)
                                     +|.+...+....+..|+.+.|.|.+.+          .|.+.+.|++++. .+....++......
T Consensus        83 ~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~~~l~c~~~~~~l~c~~~~~~p~~~i~W~~~~~-~~~~~~~~~~~~~~  161 (317)
T 2y25_A           83 DRGKDKSRLKLVDEAFKELMMEVCKKIALSATDLKIQSTAEGIQLYSFVTYYVEDLKVNWSHNGS-AIRYSDRVKTGVTG  161 (317)
T ss_dssp             SSCEEEEEECCSTHHHHHHHHHHHHHHHTCBCCCEEEECSSEEEEEEEBSSCCSSCEEEEEESSS-BCCCCSSEEEEECS
T ss_pred             CCCcEEEEEEEEEecCccccccCCceecccCCCeEEEeeccccEEEEEeccCCCCcEEEEEECCE-ECCCCCCeEEeccC
Confidence                           000000112233457889999998888          7899999999754 34344444433221


Q ss_pred             CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEe------------------cCCCeeEE-----EEcccc
Q psy15734        230 NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNL------------------VDGDIFQI-----RKMSRL  286 (314)
Q Consensus       230 ~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~------------------~~~~~~~~-----~~~~~~  286 (314)
                      +    ...|.|.++..+|+|.|+|.|.|..|....++.|.|..                  .+.+.+..     ..+..+
T Consensus       162 ~----~~~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g  237 (317)
T 2y25_A          162 E----QIWLQINEPTPNDKGKYVMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEG  237 (317)
T ss_dssp             S----EEEEEEESCCGGGCEEEEEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETT
T ss_pred             C----EEEEEECcCCcccCeeEEEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcC
Confidence            1    24799999999999999999999999888888776531                  11122221     233455


Q ss_pred             ccEeEEEEEeeccCCCccce
Q psy15734        287 HMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       287 ~~g~~~C~a~~~~~~~~~w~  306 (314)
                      +...+.|.+.+.|.|.+.|.
T Consensus       238 ~~~~l~C~~~g~p~p~i~W~  257 (317)
T 2y25_A          238 KALNLTCNVWGDPPPEVSWL  257 (317)
T ss_dssp             SBBCEEEEEECSSCCEEEEE
T ss_pred             CEEEEEEEEecCCCCEEEEE
Confidence            55679999999999999995

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=99.74  E-value=1.7e-17  Score=138.43  Aligned_cols=172  Identities=15%  Similarity=0.182  Sum_probs=110.9

Q ss_pred             cceeEEecCceEEEEEEeccc-CCCceEEEcCCCceee----c-------------------CC--eeC-----------
Q psy15734        132 STDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAIN----Y-------------------NG--ELV-----------  174 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~-p~p~~~W~~~~~~~~~----~-------------------~~--~~~-----------  174 (314)
                      +....+.+|+.+.|.|.+.+. |.+.+.|++. +.+..    .                   ..  .+.           
T Consensus        10 p~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~-~~~~~~~i~~~~~~~~~r~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   88 (327)
T 2wng_A           10 DKSVSVAAGESAILHCTVTSLIPVGPIQWFRG-AGPARELIYNQKEGHFPRVTTVSESTKRENMDFSISISNITPADAGT   88 (327)
T ss_dssp             CSEEEEETTSCEEECCEESCCCSCCCEEEEES-CSTTCEEEEETTSSCCTTEEECC---CTTCCBCCEEECSCCGGGCEE
T ss_pred             CCceEEecCCcEEEEEEccCcCCCceEEEEEC-CCCCceEEEEcCCCCcceeeeecccccccCceeEEEEccCccccCeE
Confidence            467788999999999999987 8899999994 32210    0                   00  000           


Q ss_pred             ------------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc
Q psy15734        175 ------------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD  222 (314)
Q Consensus       175 ------------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~  222 (314)
                                                    +|.+..  ....+.+|+.+.|.|.+.|.|++  .+.|++++ ..+.....
T Consensus        89 Y~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~--~~~~~~~g~~~~l~C~~~g~p~~~~~v~W~k~g-~~l~~~~~  165 (327)
T 2wng_A           89 YYCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSG--PAARATPQHTVSFTCESHGFSPRDITLKWFKNG-NELSDFQT  165 (327)
T ss_dssp             EEEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEEC--CSSCBCTTCEEEEEEEEEEEBSSCCEEEEEETT-EECCCEEE
T ss_pred             EEEEeecCCCcceeEeecCcEEEEEEecCCCceeec--cccccCCCCEEEEEEEEeCccCCCcEEEEEECC-EEcccccc
Confidence                                          122221  12457889999999999999876  89999974 33322211


Q ss_pred             eeeeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc---eeEEEEEEEecCCCeeEEE--EccccccEeEEEEEe
Q psy15734        223 YEDSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET---DGFIKVYVNLVDGDIFQIR--KMSRLHMGAYLCIAS  296 (314)
Q Consensus       223 ~~~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~C~a~  296 (314)
                      ..... ..+.+...+.|.|.....+|.|.|+|.|.|..+..   ..+..+.+.....+.+.+.  .+..++...+.|.+.
T Consensus       166 ~~~~~~~~~~~~~~s~L~i~~~~~d~~g~Y~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~~~~G~~v~l~C~~~  245 (327)
T 2wng_A          166 NVDPVGESVSYSIHSTAKVVLTREDVHSQVICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQPVRAENQVNVTCQVR  245 (327)
T ss_dssp             EEECSSCCSCEEEEEEEEEECCTTGGGCEEEEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEECCSSTTCCEEEEEEE
T ss_pred             ccccccCCCceEEEEEEEEechhcCcCceEEEEEeccccCCCcccceEEeccccCCCCEEEEecCCcCCCCcEEEEEEEc
Confidence            11111 12235566789998888888999999999988763   3344443323333444433  233455567999999


Q ss_pred             eccCC--CccceE
Q psy15734        297 NGVVP--SVSHRI  307 (314)
Q Consensus       297 ~~~~~--~~~w~v  307 (314)
                      +.+++  .+.|..
T Consensus       246 g~~p~~~~v~W~k  258 (327)
T 2wng_A          246 KFYPQRLQLTWLE  258 (327)
T ss_dssp             EEBSSCEEEEEEE
T ss_pred             cccCCCcEEEEEE
Confidence            96555  688953

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=99.74  E-value=8.4e-17  Score=129.46  Aligned_cols=188  Identities=16%  Similarity=0.228  Sum_probs=106.3

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEeee------eeeecCcCEEEEeCC-ceeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~   94 (314)
                      +..+.+.+|++++|.|.+.+.  ....+.|+|... .   .+.....      ......+|+.+..+. ...++|.|.++
T Consensus        30 ~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v  109 (256)
T 3sob_H           30 SGGGLVQPGGSLRLSCAASGFTFTNSYIHWVRQAPGKGLEWVGWITPYGGYTNYADSVKGRFTISADTSKNTAYLQMNSL  109 (256)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCCEEEEEEETTTTEEEECTTTTTTEEEEEEGGGTEEEEEECSC
T ss_pred             cCcEEEcCCCCEEEEEEeeccccCCCEEEEEEECCCCCcEEEEEEecCCCceecCCCCCCcEEEEEeCCCCEEEEEECCC
Confidence            346789999999999999653  357899998532 1   1111110      001123577776543 34568999999


Q ss_pred             cCCCCeEEEEEEecCCC------------cceeEEEEEEe----CCceeeecCcceeEEecCceEEEEEEeccc-C-CCc
Q psy15734         95 QETDRGWYMCQINTVPM------------TSQKGYLQVVV----PPRILLDRTSTDVVVREGTEVTLECSAVGY-P-EPY  156 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~------------~~~~~~l~v~~----~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~  156 (314)
                      +.+|+|.|.|.+.+.+.            ......|.|..    +|.+....  ....+.+|+.+.|.|.+.+. | .+.
T Consensus       110 ~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~--~~~~~~~g~~v~L~C~~~~~~p~~~~  187 (256)
T 3sob_H          110 RAEDTAVYYCARGSGHVNAVKNYGYVMDYWGQGTLVTVSSASTKGPSVFPLA--PSSKSTSGGTAALGCLVKDYFPEPVT  187 (256)
T ss_dssp             CGGGCEEEEEEEESSCTTCSSCCTTSEEEECCCEEEEECSSCCBCCEEEEEC--CC-----TTEEEEEEEEEEEBSSCCE
T ss_pred             CcccCEEEEEEEecCCCccccccccceeEECCCEEEEEecCCCCCCEEEEEC--CCcccccCCcEEEEEEEEEEECCCeE
Confidence            99999999999965320            11222444432    22232211  11123456666666666553 3 224


Q ss_pred             eEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-eeeEeeCCeeeE
Q psy15734        157 VAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-EDSRLINGYSCH  235 (314)
Q Consensus       157 ~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~~~~~~~~~~~~  235 (314)
                      +.| . +                                                  .......... .....++.|...
T Consensus       188 v~W-~-~--------------------------------------------------~~~~~~~~~~~~~~~~~g~~~~~  215 (256)
T 3sob_H          188 VSW-N-S--------------------------------------------------GALTSGVHTFPAVLQSSGLYSLS  215 (256)
T ss_dssp             EEE-G-G--------------------------------------------------GTBCTTEEECCCEECTTSCEEEE
T ss_pred             EEE-C-C--------------------------------------------------cccCCCeEeCCceeCCCCCEEEE
Confidence            555 2 1                                                  1110000000 001112235566


Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +.|.|.....+| |.|+|.|.|..+.......|.+
T Consensus       216 s~L~i~~~~~~d-~~ytC~v~~~~~~~~~~~~~~~  249 (256)
T 3sob_H          216 SVVTVPSSSLGT-QTYICNVNHKPSNTKVDKKVEP  249 (256)
T ss_dssp             EEEEEEGGGTTT-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             EEEEECHHHcCC-ceEEEEEEeCCCCcceEEEecc
Confidence            799999999999 9999999998877666655544

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.74  E-value=9.5e-18  Score=130.60  Aligned_cols=176  Identities=14%  Similarity=0.196  Sum_probs=91.5

Q ss_pred             cCCcceE-EEcCCcEEEEEEecCCC----ceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         26 EPVANVT-ATVGKEALMACVVENLR----EYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        26 ~~~~~~~-v~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .++.... +.+|+++.|.|.+.+.+    ...+.|+|++ ..+.....  .....++.+.+.      ..|.|......|
T Consensus         7 ~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~-~~~~~~~~~~~~~~~~g~~~~~------~~l~i~~~d~~d   79 (207)
T 1l6x_A            7 FPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDG-VEVHNAKTKPREEQYNSTYRVV------SVLTVLHQDWLN   79 (207)
T ss_dssp             ECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETT-EEECCCEECCCEECTTSCEEEE------EEEECCHHHHHT
T ss_pred             eCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECC-ccccCcccCCceeccCCcEEEE------EEEEEEHHHccC
Confidence            3443333 37899999999998754    3599999955 33221100  001112222221      134444555556


Q ss_pred             CeEEEEEEecCCCcc-eeEEE----EEEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTVPMTS-QKGYL----QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~-~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~~~~~~  171 (314)
                      +|.|+|.+.+..... ....+    .+..+|.+....... . ...|+.+.|.|.+.|. |. +.+.|++ ++..     
T Consensus        80 ~g~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~-~-~~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~-----  151 (207)
T 1l6x_A           80 GKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR-D-ELTKNQVSLTCLVKGFYPSDIAVEWES-NGQP-----  151 (207)
T ss_dssp             TCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCG-G-GGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEE-----
T ss_pred             CceEEEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCCh-H-HhcCCcEEEEEEEeCeECCCeEEEEEE-CCee-----
Confidence            999999997753322 22222    222344443322111 1 1134446666666653 32 2566665 3322     


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~  250 (314)
                                                                   +............++ |...+.|.|.....+|.|.
T Consensus       152 ---------------------------------------------~~~~~~~~~~~~~~gt~~~~s~l~i~~~~~~~~g~  186 (207)
T 1l6x_A          152 ---------------------------------------------ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNV  186 (207)
T ss_dssp             ---------------------------------------------ECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCC
T ss_pred             ---------------------------------------------ccCccccCceECCCCCEEEEEEEEECHHHcCCCCE
Confidence                                                         111101111112222 5555688888888889999


Q ss_pred             EEEEEeeCCCC
Q psy15734        251 YRCVAVNALGE  261 (314)
Q Consensus       251 Y~C~a~n~~g~  261 (314)
                      |+|.|.|....
T Consensus       187 YtC~a~n~~l~  197 (207)
T 1l6x_A          187 FSCSVMHEALH  197 (207)
T ss_dssp             EEEEEECTTSG
T ss_pred             EEEEEEcCCcC
Confidence            99999998654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=99.74  E-value=4.4e-17  Score=125.65  Aligned_cols=130  Identities=16%  Similarity=0.166  Sum_probs=100.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..+.....++.+....++   .+.|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~C~   80 (197)
T 2j8h_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVTDDDATVYQVR   80 (197)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTT---EEEEEECSCCGGGCSEEEEE
T ss_pred             CCEEEEcCCccEEcCCCEEEEEEEEeecCCCEEEEEECCEECccCCCcEEEEEcCCC---EEEEEECcCCHHhCEEEEEE
Confidence            678888888889999999999999999999999999975444433444544433333   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCe-------eEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDI-------FQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~-------~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|..|.....+.|.|...+...       .....+..++...+.|.+.+.|.|.+.|..
T Consensus        81 ~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~  140 (197)
T 2j8h_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK  140 (197)
T ss_dssp             EEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEEEEEE
T ss_pred             EEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcEEEEE
Confidence            99999988888888887653211       012233445556799999999999999963

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.73  E-value=3.2e-17  Score=129.81  Aligned_cols=181  Identities=18%  Similarity=0.201  Sum_probs=101.9

Q ss_pred             CCce-ecCCcceEEEcCCcEEEEEEecCC-Cc--eEEEEEEcCceeEEEeeeee--eecCcCEEEEeCCceeEEEEEeee
Q psy15734         21 MPRF-AEPVANVTATVGKEALMACVVENL-RE--YKVAWVKMITQTILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        21 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~-~~--~~v~W~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      +|.+ +.++....+.+|++++|.|.+.+. |.  ..+.|++++ ..+.......  ...++.+..      ...|.|.++
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g-~~~~~~~~~~~~~~~~g~~~~------~s~L~I~~~   84 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREK-SGNLRPDPMVLQEHFNGTYSA------SSAVPVSTQ   84 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSS-SSCCCCCCCEEEECTTSCEEE------EEEEECCHH
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCC-eeccccccccceECCCCcEEE------EEEEEecch
Confidence            4554 356667778899999999999874 53  499999854 3321000000  112222221      237999999


Q ss_pred             cCCCCeEEEEEEecCCCcceeEEEEEE------eCCceeeecCcceeEEecCceEEEEEEeccc-C-CCceEEEcCCCce
Q psy15734         95 QETDRGWYMCQINTVPMTSQKGYLQVV------VPPRILLDRTSTDVVVREGTEVTLECSAVGY-P-EPYVAWRREDGKA  166 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~~~~~~l~v~------~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~~~W~~~~~~~  166 (314)
                      +.+|+|.|+|.+.+.... ....+.|.      .+|.+........ . ..++.+.|.|.+.|. | .+.+.|++ ++..
T Consensus        85 ~~~D~g~Y~C~~~~~~~~-~~~~~~v~~~~~~~~~P~v~v~~~~~~-~-~~~~~~~L~C~~~g~~P~~~~v~W~k-~g~~  160 (231)
T 2w59_A           85 DWLSGERFTCTVQHEELP-LPLSKSVYRNTGPTTPPLIYPFAPHPE-E-LSLSRVTLSCLVRGFRPRDIEIRWLR-DHRA  160 (231)
T ss_dssp             HHHTTCCEEEEEECTTCS-SCEEEEECCCCSCCBCCEEEEECCCGG-G-GGSSEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             hccCCCEEEEEEEcCCCC-CceEEEEecCCCCCcCCEEEEeCCCHH-H-hccCceEEEEEEEeccCCCcEEEEEE-CCEE
Confidence            999999999999765322 23334442      2333322211100 0 123345555555553 2 23555555 3322


Q ss_pred             eecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee--eeE---------ee-CCeee
Q psy15734        167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE--DSR---------LI-NGYSC  234 (314)
Q Consensus       167 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~--~~~---------~~-~~~~~  234 (314)
                                                                        +.......  ...         .+ +.|..
T Consensus       161 --------------------------------------------------l~~~~~~~~~~~~~~~~~~~~~~d~gt~~~  190 (231)
T 2w59_A          161 --------------------------------------------------VPATEFVTTAVLPEERTANGAGGDGDTFFV  190 (231)
T ss_dssp             --------------------------------------------------CCGGGCEECCCEECCTTSCC---CCCCEEE
T ss_pred             --------------------------------------------------CCCcccccCccccCcccccccCCCCCeEEE
Confidence                                                              21111000  011         12 23566


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      .+.|.|.....+|.|.|+|.|.|.....
T Consensus       191 ~s~L~i~~~~~~~~g~YtC~v~n~~l~~  218 (231)
T 2w59_A          191 YSKMSVETAKWNGGTVFACMAVHEALPM  218 (231)
T ss_dssp             EEEEEEEHHHHHTTCCEEEEEECTTSTT
T ss_pred             EEEEEEeHHHcCCCCcEEEEEEcCCCCC
Confidence            6799999999999999999999987643

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=99.72  E-value=5.4e-17  Score=135.15  Aligned_cols=165  Identities=13%  Similarity=0.173  Sum_probs=104.5

Q ss_pred             ceEEEEEEeccc-C-CCceEEEcCCCceeecC----------CeeC----------------------------------
Q psy15734        141 TEVTLECSAVGY-P-EPYVAWRREDGKAINYN----------GELV----------------------------------  174 (314)
Q Consensus       141 ~~~~l~C~~~~~-p-~p~~~W~~~~~~~~~~~----------~~~~----------------------------------  174 (314)
                      +.+.|.|.+.+. | .+.+.|++ ++..+...          +...                                  
T Consensus        25 ~~v~L~C~~~g~~P~~~~v~W~k-~g~~l~~~~~~~~~~~~~g~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~  103 (323)
T 2wqr_A           25 PTIQLLCLVSGYTPGTIQITWLE-DGQVMDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGHTFEDSTK  103 (323)
T ss_dssp             SEEEEEEEEEEECCCCEEEEEEE-TTEECCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTEEEEEEEC
T ss_pred             CcEEEEEEEeCeECCCeEEEEEE-CCEEcccceecCCcCccCCcEEEEEEEEEcHHHcCCCCcEEEEEEeCCCCcceeee
Confidence            699999999986 4 46999998 66554321          1100                                  


Q ss_pred             --------CC-eEEcCCCcceeecCccEEEEEEEeec-CCc---eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEe
Q psy15734        175 --------PP-MLTIPNQLEGAFVSQTVELHCHTEAF-PAS---LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       175 --------~p-~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                              +| .+..++....+.+|+++.|.|.+.|. |.|   .+.|+++++..+............+.+...+.|.|.
T Consensus       104 ~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p~~~~i~W~k~~g~~~~~~~~~~~~~~~g~~~~~~~L~I~  183 (323)
T 2wqr_A          104 KCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVQLTWSRASGKPVNHSTRKEEKQRNGTLTVTSTLPVG  183 (323)
T ss_dssp             CCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCSSCCEEEEEETTCCCCCCCCCEEEECTTSCEEEEEEEECC
T ss_pred             cCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCCCceEEEEEECCCcccccccCCCccCCCCCEEEEEEEEEC
Confidence                    12 23344555567889999999999986 456   899999765544322211111112224456789999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCceeEEEEEEE--ecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        242 SILSHQFGSYRCVAVNALGETDGFIKVYVN--LVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~--~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ++..+|+|.|+|.|.|..+.......+.+.  ....+.+.+....    .++...+.|.|.+++++  .+.|.
T Consensus       184 ~~~~~D~G~Y~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~  256 (323)
T 2wqr_A          184 TRDWIEGETYQCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPEDISVQWL  256 (323)
T ss_dssp             HHHHHTTCCEEEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             HHHccCCCCEEEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCCCcEEEEE
Confidence            999999999999999987544334333221  1123333332211    24556799999996554  68885

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.72  E-value=6.5e-17  Score=113.26  Aligned_cols=98  Identities=15%  Similarity=0.131  Sum_probs=80.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++. .+....++.+....+    .+.|.|.++..+|+|.|+|.
T Consensus         7 pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~-~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (114)
T 2cqv_A            7 GPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRK-QIQESEHMKVENSEN----GSKLTILAARQEHCGCYTLL   81 (114)
T ss_dssp             CCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSS-BCCCSSSEEEEECSS----EEEEEETTCCTTTCEEEEEE
T ss_pred             CCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCE-ECcCCCCEEEEEcCC----EEEEEECCCChhcCEEEEEE
Confidence            7888888888899999999999999999999999999754 344444554432211    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCe
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      |.|..|.....+.|.|...|.++
T Consensus        82 a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           82 VENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             EECSSCEEECCEEEEEECSCSCC
T ss_pred             EEECCCcEEEEEEEEEECCCCCC
Confidence            99999999999999998876554

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=99.71  E-value=7.3e-17  Score=123.83  Aligned_cols=133  Identities=23%  Similarity=0.383  Sum_probs=97.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|..++....+.+|+++.|.|.+.+.|.+.+.|++++........++.+. ..+.     .|.|.+++.+|+|.|+|.
T Consensus         7 ~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i~W~~~~~~~~~~~~~~~~~-~~~~-----~L~i~~~~~~d~G~Y~C~   80 (192)
T 2iep_A            7 APVITTPLETVDALVEEVATFMCAVESYPQPEISWTRNKILIKLFDTRYSIR-ENGQ-----LLTILSVEDSDDGIYCCT   80 (192)
T ss_dssp             EEEESSCCCEEEEETTSCEEEECCEEEESCCEEEEEETTEECCTTCTTEEEE-GGGT-----EEEESSCCGGGCEEEEEE
T ss_pred             CceeecCccceeeeCCCcEEEEeeCCCCCCCeEEEEECCEEccccCccEEEc-CCcc-----EEEEcCCCcccCeEEEEE
Confidence            4677777788889999999999999999999999999754333223333322 2222     799999999999999999


Q ss_pred             EeeCCCCc-eeEEEEEEEec--------------------------------------------------CCCeeEEEEc
Q psy15734        255 AVNALGET-DGFIKVYVNLV--------------------------------------------------DGDIFQIRKM  283 (314)
Q Consensus       255 a~n~~g~~-~~~~~l~V~~~--------------------------------------------------~~~~~~~~~~  283 (314)
                      +.|..|.. ...+.|.|...                                                  ....|.+..+
T Consensus        81 ~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~L~i~~~  160 (192)
T 2iep_A           81 ANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSVSWIKGDSALRENSRIAVLESGSLRIHNV  160 (192)
T ss_dssp             EECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEEEEEETTEECCCCSSEEECTTSCEEESSC
T ss_pred             EEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceEEEEeCCEEccCCCcEEEecCCcEEEecC
Confidence            99998874 44555555321                                                  1223555666


Q ss_pred             cccccEeEEEEEeeccCCCccceEEEEEEe
Q psy15734        284 SRLHMGAYLCIASNGVVPSVSHRIMVTVHC  313 (314)
Q Consensus       284 ~~~~~g~~~C~a~~~~~~~~~w~v~l~v~~  313 (314)
                      ...|.|.|+|.|.|..+...+..+.|.|++
T Consensus       161 ~~~d~G~Y~C~a~n~~g~~~s~~~~l~V~~  190 (192)
T 2iep_A          161 QKEDAGQYRCVAKNSLGTAYSKLVKLEVEV  190 (192)
T ss_dssp             CGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             ChhhCEEEEEEEEcCCCcEEEEEEEEEEEe
Confidence            777788888888888776667778887765

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.71  E-value=6.5e-17  Score=113.53  Aligned_cols=99  Identities=22%  Similarity=0.326  Sum_probs=81.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.....++.+....++   .++|.|.++..+|+|.|+|.
T Consensus        15 ~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~   91 (116)
T 2kkq_A           15 APMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNNEMVQFNTDRISLYQDNTG---RVTLLIKDVNKKDAGWYTVS   91 (116)
T ss_dssp             CCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETTEECCCCBTTEEEEECTTC---EEEEEEEEECGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECCEECcCCCCeEEEEeCCCC---eEEEEECCCCcccCEEEEEE
Confidence            788888888899999999999999999999999999975443333444444332222   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.|..|.....+.|.|...|..
T Consensus        92 a~N~~G~~~~~~~l~V~~~p~~  113 (116)
T 2kkq_A           92 AVNEAGVTTCNTRLDVTARPNQ  113 (116)
T ss_dssp             EEETTEEEEEEEEEEEECCSCC
T ss_pred             EEcCCCeEEEEEEEEEeCCCCC
Confidence            9999999999999999887654

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.71  E-value=4.3e-18  Score=142.42  Aligned_cols=169  Identities=20%  Similarity=0.314  Sum_probs=88.6

Q ss_pred             cceeEEecCceEEEEEEeccc-CCCceEEEcCCCceeecCCeeC------------------------------------
Q psy15734        132 STDVVVREGTEVTLECSAVGY-PEPYVAWRREDGKAINYNGELV------------------------------------  174 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~-p~p~~~W~~~~~~~~~~~~~~~------------------------------------  174 (314)
                      +....+.+|+.+.|.|.+.+. |.+.+.|++ ++..+.......                                    
T Consensus        15 ~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k-~g~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~~~~~~~~l~   93 (334)
T 1ry7_B           15 QEQLVFGSGDAVELSCPPPGGGPMGPTVWVK-DGTGLVPSERVLVGPQRLQVLNASHEDSGAYSCRQRLTQRVLCHFSVR   93 (334)
T ss_dssp             --------------------------------------------------------------------------------
T ss_pred             cCcEEEecCCcEEEEeeCCCCCCCcceEEEE-CCeeCCCcccEEeccceEEEeecccccCEEEEEEEEeCCeEEEEEEEE
Confidence            456778899999999999987 678999999 565543321110                                    


Q ss_pred             ---C----------------------CeEEcC----CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceee
Q psy15734        175 ---P----------------------PMLTIP----NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED  225 (314)
Q Consensus       175 ---~----------------------p~~~~~----~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~  225 (314)
                         +                      |.+..+    .....+.+|+++.|.|.+.|.|.|.+.|++++.. +....+...
T Consensus        94 V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v~W~~~~~~-~~~~~~~~~  172 (334)
T 1ry7_B           94 VTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGG  172 (334)
T ss_dssp             -------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEEECCBTTBC-CCTTSSTTC
T ss_pred             EeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeEEEEECCEE-Ccccccccc
Confidence               1                      111111    1224677899999999999999999999997543 332222211


Q ss_pred             -e-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCC--CeeE-----EEEccccccEeEEEEEe
Q psy15734        226 -S-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDG--DIFQ-----IRKMSRLHMGAYLCIAS  296 (314)
Q Consensus       226 -~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~--~~~~-----~~~~~~~~~g~~~C~a~  296 (314)
                       . ....     ..|.|.++..+|+|.|+|.|.|..|.....+.|.|...+.  +.+.     ...+..++...+.|.+.
T Consensus       173 ~~~~~~~-----~~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~  247 (334)
T 1ry7_B          173 IKLRHQQ-----WSLVMESVVPSDRGNYTCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVY  247 (334)
T ss_dssp             CCCCTTT-----TEEEECSCCGGGCCCEEEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCB
T ss_pred             eecccce-----EEEEECCCCcccCEEEEEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEe
Confidence             1 1122     2899999999999999999999999988889998887432  1111     12344455667999999


Q ss_pred             eccCCCccceE
Q psy15734        297 NGVVPSVSHRI  307 (314)
Q Consensus       297 ~~~~~~~~w~v  307 (314)
                      +.|.|.+.|..
T Consensus       248 g~p~p~v~W~~  258 (334)
T 1ry7_B          248 SDAQPHIQWLK  258 (334)
T ss_dssp             CSSCEEEEEEE
T ss_pred             cCCCCeEEEEE
Confidence            99999999965

>1ypz_E T cell receptor delta, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.70  E-value=1.2e-15  Score=118.51  Aligned_cols=85  Identities=22%  Similarity=0.386  Sum_probs=59.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e--eEEEeeeeeeecCcCEEEEeC--CceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q--TILSIHHKVVTQNKRVSITFN--DHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~--~~~~~~~~~~~~~~~~~~~~~--~~~~~~L~i~~~~~~d   98 (314)
                      +..++..+.+.+|++++|.|.+.+.. ..+.|+|... .  .............+|+.+..+  ....++|.|.+++.+|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~-~~v~W~r~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~~L~I~~v~~~D   82 (207)
T 1ypz_E            4 VEQSPSALSLHEGTDSALRCNFTTTM-RSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSKERRYSTLHIRDAQLED   82 (207)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCC-SEEEEEEECTTSCCEEEEEESSEEEEETTEEEEECTTTCSEEEEEECSCCGGG
T ss_pred             cEECCCeEEEccCCcEEEEEEEeCCC-eEEEEEEeCCCCCeEEEEEEccCCccCCCEEEEeccCCCCEEEEEECCCCHHH
Confidence            45567789999999999999997654 3799999642 1  111111111123567777654  2345689999999999


Q ss_pred             CeEEEEEEecC
Q psy15734         99 RGWYMCQINTV  109 (314)
Q Consensus        99 ~G~Y~C~~~~~  109 (314)
                      +|.|.|.+.+.
T Consensus        83 ~G~Y~C~~~~~   93 (207)
T 1ypz_E           83 SGTYFCAADTW   93 (207)
T ss_dssp             CEEEEEEEECB
T ss_pred             CEEEEEEEecC
Confidence            99999999653

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.70  E-value=2.1e-16  Score=107.67  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=76.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++......++   .++|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~   80 (99)
T 1g1c_A            5 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEE
T ss_pred             CCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEEC-CEECCCCCCEEEEEcCCC---EEEEEECCCCcCCCEEEEEE
Confidence            56777778888999999999999999999999999997 444444444443322332   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|.....+.|.|..
T Consensus        81 a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           81 AINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCcEEEEEEEEEec
Confidence            999999999998888863

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.70  E-value=6.5e-17  Score=112.52  Aligned_cols=99  Identities=19%  Similarity=0.332  Sum_probs=80.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.....++.+....++   ...|.|.++..+|+|.|+|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm2_A            8 APFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQISPKSDHYTIQRDLDG---TCSLHTTASTLDDDGNYTIM   84 (110)
T ss_dssp             CCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCBCCTTCSSEEEEECTTC---EEEEEESSCCTTTCSCCEEE
T ss_pred             CCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEECCCCCCeEEEEECCCc---EEEEEECCCChhhCEEEEEE
Confidence            677777778888999999999999999999999999975444333445544433233   24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.|..|.....+.|.|...+.+
T Consensus        85 a~N~~g~~~~~~~l~V~~~~~~  106 (110)
T 2dm2_A           85 AANPQGRISCTGRLMVQAVNSG  106 (110)
T ss_dssp             EECTTCCEEECCCEEEECCSCC
T ss_pred             EEECCCeEEEEEEEEEECCCCC
Confidence            9999999999999999877644

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=99.70  E-value=4.3e-16  Score=129.27  Aligned_cols=178  Identities=12%  Similarity=0.021  Sum_probs=112.1

Q ss_pred             EEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeec-------CCeeC---------------
Q psy15734        117 YLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINY-------NGELV---------------  174 (314)
Q Consensus       117 ~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~-------~~~~~---------------  174 (314)
                      ...+..+|.+...+  . ..+.+|+.++|.|.+.+. .+.+.|++ ++..+..       .+.+.               
T Consensus        18 ~~~~~~~P~i~~~p--~-~~v~~G~~v~L~C~~~~~-~~~~~W~k-~g~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~   92 (316)
T 3vh8_G           18 HMGGQDKPFLSAWP--S-AVVPRGGHVTLRCHYRHR-FNNFMLYK-EDRIHIPIFHGRIFQESFNMSPVTTAHAGNYTCR   92 (316)
T ss_dssp             ------CCEEEEES--C-SEEETTSCEEEEEEBTTB-CCSEEEEE-SSCSSSCHHHHCCBSSCEEECSCCGGGCEEEEEE
T ss_pred             ccCCCCCCEeeccC--C-CccCCCCCEEEEEEccCC-CceEEEEe-CCCccceeecCCcceEEEEECCCCcccCeEEEEE
Confidence            34555677777664  2 467899999999999887 68999999 4443211       00000               


Q ss_pred             --------------------------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe
Q psy15734        175 --------------------------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL  228 (314)
Q Consensus       175 --------------------------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~  228 (314)
                                                +|.+...+.. .+.+|++++|.|.+. .+++.+.|++++............  .
T Consensus        93 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~-~~~~~~~w~k~g~~~~~~~~~~~~--~  168 (316)
T 3vh8_G           93 GSHPHSPTGWSAPSNPVVIMVTGNHRKPSLLAHPGP-LVKSGERVILQCWSD-IMFEHFFLHKEGISKDPSRLVGQI--H  168 (316)
T ss_dssp             EBCSSSSSSBCCCCCCEEEEEECSSCCCEEEEESCS-EEETTCCEEEEEEES-SCCSEEEEEETTCCSCCEEEECEE--E
T ss_pred             EEcCCCCcceecCCCcEEEEEecCCCCCeEEecCCC-ccCCCCeEEEEEcCC-CCCcEEEEEECCCccccceeeeee--c
Confidence                                      2344433333 378999999999995 456788899875433211100000  0


Q ss_pred             eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-----eeEEEEEEEecCC-CeeEEE---EccccccEeEEEEEeecc
Q psy15734        229 INGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-----DGFIKVYVNLVDG-DIFQIR---KMSRLHMGAYLCIASNGV  299 (314)
Q Consensus       229 ~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~-~~~~~~---~~~~~~~g~~~C~a~~~~  299 (314)
                      .  ......|.|.+++.+|+|.|+|.|.|..|..     +..+.|.|..... +.+...   .+..++...+.|.+.. +
T Consensus       169 ~--~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~-~  245 (316)
T 3vh8_G          169 D--GVSKANFSIGPMMLALAGTYRCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGPKVQAGESVTLSCSSRS-S  245 (316)
T ss_dssp             T--TEEEEEEEECSCCGGGCEEEEEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCSCCCTTSCCEEEEEESS-C
T ss_pred             C--CCceEEEEECCCChhhCceEEEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCCeecCCCcEEEEEECCC-C
Confidence            0  0123489999999999999999999988742     5567777776433 344433   2334555679999974 5


Q ss_pred             CCCccce
Q psy15734        300 VPSVSHR  306 (314)
Q Consensus       300 ~~~~~w~  306 (314)
                      .+.+.|.
T Consensus       246 ~~~~~W~  252 (316)
T 3vh8_G          246 YDMYHLS  252 (316)
T ss_dssp             CSEEEEE
T ss_pred             CcEEEEE
Confidence            6778874

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=99.69  E-value=4.1e-16  Score=119.80  Aligned_cols=127  Identities=17%  Similarity=0.147  Sum_probs=96.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +|.|..++....+.+|+++.|.|.+.+.|.+.+.|++++.. +....  ++.+....+    .+.|.|.+++.+|+|.|+
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~   79 (194)
T 2a38_A            5 APTFTQPLQSVVVLEGSTATFEAHISGFPVPEVSWFRDGQV-ISTSTLPGVQISFSDG----RAKLTIPAVTKANSGRYS   79 (194)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEESSSB-CCTTTSTTCEEEEETT----EEEEEESSCCGGGCEEEE
T ss_pred             CCeEEccCCceEEECCCEEEEEEEEEecCCCEEEEEECCEE-cccccCCceEEEeCCC----EEEEEECCCCcccCEEEE
Confidence            56777788888999999999999999999999999997543 33322  333332221    358999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEEecCCCeeEE-----EEccccccEeEEEEEeeccCCCccce
Q psy15734        253 CVAVNALGETDGFIKVYVNLVDGDIFQI-----RKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~~~~~~~~~~-----~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|.|..|.....+.|.|.....++...     ..+..++...+.|.+.+.|.|.+.|.
T Consensus        80 C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~  138 (194)
T 2a38_A           80 LKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVVKFY  138 (194)
T ss_dssp             EEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEEEEE
T ss_pred             EEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeEEEE
Confidence            9999999988888888887543222222     12334455679999999999999995

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.69  E-value=1.8e-16  Score=108.16  Aligned_cols=95  Identities=18%  Similarity=0.187  Sum_probs=75.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++ ..+............++   .+.|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g-~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~   80 (100)
T 2kdg_A            5 PPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNG-RTVQSDDLHKMIVSEKG---LHSLIFEVVRASDAGAYACV   80 (100)
T ss_dssp             EEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETT-EEECCCSSSCEEEETTT---EEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECC-EECcCCCcEEEEEcCCC---eEEEEECCCCcccCEEEEEE
Confidence            566777777888999999999999999999999999974 44444333333333332   24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEec
Q psy15734        255 AVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.|..|.....+.|.|..+
T Consensus        81 a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           81 AKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             EEETTEEEEEEEEEEEECC
T ss_pred             EEcCCCeEEEEEEEEEEec
Confidence            9999999999999888754

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=99.69  E-value=5.7e-17  Score=134.41  Aligned_cols=166  Identities=12%  Similarity=0.122  Sum_probs=111.5

Q ss_pred             ceeEEecCceEEEEEEecccC-CCceEEEcCCCceeec----C-------CeeC--------------------------
Q psy15734        133 TDVVVREGTEVTLECSAVGYP-EPYVAWRREDGKAINY----N-------GELV--------------------------  174 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p-~p~~~W~~~~~~~~~~----~-------~~~~--------------------------  174 (314)
                      ....+.+|+.+.|.|.+.+.| .+.+.|++. +.....    .       +.+.                          
T Consensus        13 ~~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~-~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~Y~C~a~n~~g~~~~~   91 (315)
T 1itb_B           13 IILVSSANEIDVRPCPLNPNEHKGTITWYKD-DSKTPVSTEQASRIHQHKEKLWFVPAKVEDSGHYYCVVRNSSYCLRIK   91 (315)
T ss_dssp             CCCEEETTSCCCCBCCCCSCCCSSCCCEECT-TSCSCSCCCTTSSSEECSSBEECTTCCGGGCSCCEECCCSSSCCCCEE
T ss_pred             eEEEEcCCCcEEEEeeccCcCCCceEEEEeC-CCcCccccccCCcEeccCCeEEECCCChhhCEEEEEEEeCCceEEEEE
Confidence            356788999999999999887 789999994 432110    0       1110                          


Q ss_pred             --------CCeEEcCC---CcceeecCccEEEEEEE------eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEE
Q psy15734        175 --------PPMLTIPN---QLEGAFVSQTVELHCHT------EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       175 --------~p~~~~~~---~~~~v~~g~~~~l~C~~------~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~  237 (314)
                              +|.+...+   ....+..|+++.|.|.+      .|.|.|.+.|++++..+.....+  . ...++     .
T Consensus        92 ~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i~W~k~~~~l~~~~~~--~-~~~~~-----~  163 (315)
T 1itb_B           92 ISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDCKPLLLDNIH--F-SGVKD-----R  163 (315)
T ss_dssp             CCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCCEEEETTEECCCCSSS--E-EEETT-----E
T ss_pred             EEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEEEEEECCEECCCccce--E-eecCc-----e
Confidence                    11111111   12457789999999998      89999999999975443322222  1 23344     9


Q ss_pred             EEEeecCCCCCeEEEEEEe-eCCCCc---eeEEEEEEEec---CCCeeEE-----EEccccccEeEEEEEeeccCCCccc
Q psy15734        238 LKIRSILSHQFGSYRCVAV-NALGET---DGFIKVYVNLV---DGDIFQI-----RKMSRLHMGAYLCIASNGVVPSVSH  305 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~-n~~g~~---~~~~~l~V~~~---~~~~~~~-----~~~~~~~~g~~~C~a~~~~~~~~~w  305 (314)
                      |.|.++..+|+|.|+|.|. |..|..   ...+.+.+...   ..+.+..     ..+..++...+.|.+.+.|.|.+.|
T Consensus       164 L~i~~v~~~d~G~Y~C~a~~n~~g~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i~W  243 (315)
T 1itb_B          164 LIVMNVAEKHRGNYTCHASYTYLGKQYPITRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYW  243 (315)
T ss_dssp             EEESSCCGGGCEEEEEEEEEEETTEEEEEEEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEEEE
T ss_pred             EEEEeceehhCcEEEEEEEcCCCCcEEEEEEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCeeEE
Confidence            9999999999999999999 788876   34444544421   1222211     1344555667999999999999999


Q ss_pred             eE
Q psy15734        306 RI  307 (314)
Q Consensus       306 ~v  307 (314)
                      ..
T Consensus       244 ~~  245 (315)
T 1itb_B          244 KW  245 (315)
T ss_dssp             EE
T ss_pred             EE
Confidence            64

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=99.68  E-value=3.3e-16  Score=121.23  Aligned_cols=128  Identities=16%  Similarity=0.147  Sum_probs=93.7

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCC-----ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPA-----SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +..++....+.+|+++.|.|.+.+.|.     +.+.|+++++.......++.+... ........|.|.+++.+|+|.|+
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~~~~~~~~v~W~k~~~~~~~~~~r~~~~~~-~~~~~~~~L~I~~v~~~D~G~Y~   83 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRRECTELEGIRASLQKVENDTSLQSERATLLEE-QLPLGKALFHIPSVQVRDSGQYR   83 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC---CTTEEEEEEECC--CCCBCSSCEECGG-GGGGTEEEEEECSCCGGGCEEEE
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCCCCccceEEEEEcCCCcccccCCceEEeec-cccCCeeEEEECCCCHHHCcEEE
Confidence            345666788999999999999999987     899999954443333333332211 00112349999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEEecCCCee-EEEEccccccEeEEEEEeeccCCCccce
Q psy15734        253 CVAVNALGETDGFIKVYVNLVDGDIF-QIRKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~~~~~~~~-~~~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|.|..+.....+.|.|...+..+. .+.....++...+.|.+.+.|.|.+.|.
T Consensus        84 C~~~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~v~l~C~~~g~P~p~v~W~  138 (202)
T 3bp6_B           84 CLVICGAAWDYKYLTVKVKASYMRIDTRILEVPGTGEVQLTCQARGYPLAEVSWQ  138 (202)
T ss_dssp             EEEEETTEEEEEEEEEEEEBCCCCEEEEEEECTTTCCEEEEEEEEEBSCCEEEET
T ss_pred             EEEEeCCCcceEEEEEEecCCCCcccEEEEecCCCCeEEEEEEccccCCceEEEE
Confidence            99999999888899999987654333 3334556666789999999999999995

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=99.68  E-value=1.1e-16  Score=110.35  Aligned_cols=96  Identities=26%  Similarity=0.328  Sum_probs=75.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|+..+..+.+.+|+++.|.|.+.|.|.+.+.|++++ ..+        ..+.++.+..++. ...|.|.+++.+|
T Consensus        11 ~~pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v~W~k~g-~~l--------~~~~~~~~~~~~~-~~~L~I~~v~~~D   80 (107)
T 3knb_B           11 GSPPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVVVWEKGG-QQL--------AASERLSFPADGA-EHGLLLTAALPTD   80 (107)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EEC--------CCCSSEECCEETT-EEEEEESSCCGGG
T ss_pred             CCCCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEEEEEECc-ccc--------cceeeEEEeecCc-eEEEEEecCChhh
Confidence            35789999999999999999999999999999999999954 332        3345555544433 3379999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPP  124 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p  124 (314)
                      +|.|+|.+.|. |.....+.|.|..+|
T Consensus        81 ~G~Y~C~a~N~~G~~~~~~~l~V~~pP  107 (107)
T 3knb_B           81 AGVYVCRARNAAGEAYAAAAVTVLEPP  107 (107)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC--
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEEcCC
Confidence            99999999875 555667788887765

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.68  E-value=1.4e-16  Score=108.48  Aligned_cols=94  Identities=18%  Similarity=0.259  Sum_probs=74.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+......+.. ...++   .++|.|.++..+|+|.|+|.
T Consensus         5 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~~~~~~~~~~~~~-~~~~~---~~~L~i~~~~~~D~G~Y~C~   80 (99)
T 1u2h_A            5 PPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNRQPVRPDQRRFAE-EAEGG---LCRLRILAAERGDAGFYTCK   80 (99)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETTEECCCBTTEEEE-ECGGG---EEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECCEECCCCCCEEEE-ECCCC---EEEEEEccCCcCCCEEEEEE
Confidence            577777888889999999999999999999999999975433322222222 11221   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|.....+.|.|..
T Consensus        81 a~N~~g~~~~~~~l~V~~   98 (99)
T 1u2h_A           81 AVNEYGARQCEARLEVRG   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCCceeEEEEEEEEC
Confidence            999999999998888864

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=99.68  E-value=1.2e-15  Score=124.68  Aligned_cols=164  Identities=21%  Similarity=0.194  Sum_probs=114.5

Q ss_pred             cceeEEecCceEEEEEEecccCCCceEEEcCCCceee--c--C-CeeC--------------------------------
Q psy15734        132 STDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN--Y--N-GELV--------------------------------  174 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~--~--~-~~~~--------------------------------  174 (314)
                      +....+.+|+.+.|.|.+.+    .+.|++.......  .  . ..+.                                
T Consensus        11 ~~~~~v~~G~~v~L~C~~~~----~v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~~~l~V~   86 (289)
T 3ejj_X           11 GPELVVEPGETVTLRCVSNG----SVEWDGPISPYWTLDPESPGSTLTTRNATFKNTGTYRCTELEDPMAGSTTIHLYVK   86 (289)
T ss_dssp             SSEEEECTTCCEEEEEECSS----CCEEECSCSSSSEECCCSSCCEEEESSCCGGGCEEEEEECCC-----CEEEEEEEC
T ss_pred             CceEEECCCCCEEEEEEeCC----cEEEccCCCceEEEeccCCccEEEEeeeccccCEEEEEEEeccCCcceeEEEEEEe
Confidence            46678899999999999877    4999974322111  0  0 0110                                


Q ss_pred             -CCe-EEcCCCcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 -PPM-LTIPNQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 -~p~-~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                       +|. +...+....+.+|+++.|.|.+.+.|.+. +.|++.++..+....++.  ...++     .|.|.++..+|+|.|
T Consensus        87 ~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~v~~~d~G~Y  159 (289)
T 3ejj_X           87 DPAHSWNLLAQEVTVVEGQEAVLPCLITDPALKDSVSLMREGGRQVLRKTVYF--FSPWR-----GFIIRKAKVLDSNTY  159 (289)
T ss_dssp             CSSCSEEESCSEEEEETTSCEEECEEESCGGGGGSEEEEEGGGEECCTTCCEE--EETTT-----EEEESSCCGGGCEEE
T ss_pred             CCCcceecccceEEEecCCceEeEEEccCCCcceEEEEEecCCeecCCCccEE--ECCCC-----CEEEeecccccCEEE
Confidence             222 45555777889999999999999988775 999876566554444333  23444     899999999999999


Q ss_pred             EEEEe-eCCCCceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEee-ccCCCccce
Q psy15734        252 RCVAV-NALGETDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASN-GVVPSVSHR  306 (314)
Q Consensus       252 ~C~a~-n~~g~~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~-~~~~~~~w~  306 (314)
                      +|.|. |..+.....+.|.|....  .+.+....    +..++...+.|.+.+ .|.+.+.|.
T Consensus       160 ~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~  222 (289)
T 3ejj_X          160 VCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNVILK  222 (289)
T ss_dssp             EEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEEEEE
T ss_pred             EEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEEEEE
Confidence            99999 555566778888887532  23333321    234455679999998 688899995

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.68  E-value=9.7e-17  Score=108.00  Aligned_cols=90  Identities=18%  Similarity=0.207  Sum_probs=71.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-CeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-GDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.|..++....+.+|+.+.|.|.+.|.|.|.+.|++++ +..+...  ..... ..   ..+.|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~~~--~~~~~-~~---~~~~L~i~~~~~~D~G~Y~C   75 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPE--LLVDA-KS---STTSIFFPSAKRADSGNYKL   75 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCSTT--SEEEE-ET---TEEEEECTTBCGGGCEEEEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccCCc--EEEEe-cC---CEEEEEECCCChhcCEEEEE
Confidence            577877778889999999999999999999999999975 1333222  11111 11   13589999999999999999


Q ss_pred             EEeeCCCCceeEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|..|.....+.|.|
T Consensus        76 ~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           76 KVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEcCCCeEEEEEEEEE
Confidence            99999999888888876

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=99.68  E-value=4.7e-16  Score=119.68  Aligned_cols=127  Identities=17%  Similarity=0.167  Sum_probs=97.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+...+....+.+|+++.|.|.+.+.|.+.+.|+++ +..+....++.+...  +  ...+|.|.++..+|+|.|+|.
T Consensus         7 ~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~-~~~~~~~~~~~~~~~--~--~~~~L~i~~~~~~d~G~Y~C~   81 (197)
T 3lcy_A            7 APGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDIKWYRF-GKELIQSRKYKMSSD--G--RTHTLTVMTEEQEDEGVYTCI   81 (197)
T ss_dssp             EEEEEECCCCEEEETTSEEEEEEEEEEESCCEEEEEET-TEEECCCSSEEEEES--S--SEEEEEEECCSGGGCEEEEEE
T ss_pred             CCcccccCCceEEeCCCcEEEEEEEecCCCCEEEEEEC-CEECCCCccEEEEeC--C--CEEEEEEecCCccCCEEEEEE
Confidence            56777778888999999999999999999999999997 444444444444322  2  134899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCee-----EEEEccccccEeEEEEEeeccCCCccce
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDIF-----QIRKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~~-----~~~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|..|.....+.|.|...+....     ....+..++...+.|.+.+.|.|.+.|.
T Consensus        82 ~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~  138 (197)
T 3lcy_A           82 ATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAMTWF  138 (197)
T ss_dssp             EECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEEEEE
T ss_pred             EECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCeeEEe
Confidence            999999888888888876542111     1112334555679999999999999995

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=99.68  E-value=4.5e-16  Score=129.90  Aligned_cols=121  Identities=10%  Similarity=0.053  Sum_probs=87.6

Q ss_pred             CCCcceeecC---ccEEEEEE-EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        181 PNQLEGAFVS---QTVELHCH-TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       181 ~~~~~~v~~g---~~~~l~C~-~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .+....+.+|   +.+.|.|. +.+.|.|.+.|+++........   ......+.+...+.|.|.++..+|+|.|+|.|.
T Consensus       138 ~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i~W~~~~~~~~~~~---~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~  214 (331)
T 3u83_A          138 TQAVLRAKKGQDDKVLVATCTSANGKPPSVVSWETRLKGEAEYQ---EIRNPNGTVTVISRYRLVPSREAHQQSLACIVN  214 (331)
T ss_dssp             CSSCEEECTTCCCCEEEEEEEEEEEBSCCEEEEEESSCCEEEEE---EEECTTSCEEEEEEEEECCCGGGTTCEEEEEEE
T ss_pred             CCCceeecCCCccceEEEEEEecCCcCCceEEEEcCCCCccccc---eeECCCCcEEEEEEEEEEeccccCCCEEEEEEe
Confidence            4455667788   77999997 8999999999998532221110   011112224445689999999999999999999


Q ss_pred             eCCCCceeEEEEEEEecCCCeeEEEE-----ccccccEeEEEEEeeccCCC-ccce
Q psy15734        257 NALGETDGFIKVYVNLVDGDIFQIRK-----MSRLHMGAYLCIASNGVVPS-VSHR  306 (314)
Q Consensus       257 n~~g~~~~~~~l~V~~~~~~~~~~~~-----~~~~~~g~~~C~a~~~~~~~-~~w~  306 (314)
                      |..|.....+.|.|..+|.  +.+..     +..++...+.|.+.+.|.|. +.|.
T Consensus       215 n~~~~~~~~~~l~V~~~P~--~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~i~W~  268 (331)
T 3u83_A          215 YHMDRFKESLTLNVQYEPE--VTIEGFDGNWYLQRMDVKLTCKADANPPATEYHWT  268 (331)
T ss_dssp             ETTEEEEEEEECCEEEEEE--EEEECCCSCCBTTCCCEEEEEEEEEESCCCEEEEE
T ss_pred             cCCCcceeeEEEEEecCCe--EEEecCCCceEeCCCeEEEEEeCcCCCCCCEEEEE
Confidence            9999888899998887753  33222     33345567999999999998 9995

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.68  E-value=4e-16  Score=107.10  Aligned_cols=94  Identities=18%  Similarity=0.247  Sum_probs=76.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+.....    ..+|.|.++..+|+|.|+|.
T Consensus         8 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~-~~~~~~~~~~~~~~~~~----~~~L~i~~~~~~D~G~Y~C~   82 (103)
T 3qp3_A            8 APRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHN-GVELQESSKIHYTNTSG----VLTLEILDCHTDDSGTYRAV   82 (103)
T ss_dssp             EEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEETT----EEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEEC-CEECCCCCCEEEEECCC----EEEEEEcCCCcccCEEEEEE
Confidence            56777778888999999999999999999999999997 44444445554432211    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEec
Q psy15734        255 AVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.|..|.....+.|.|...
T Consensus        83 a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           83 CTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             EEETTEEEEEEEEEEEECC
T ss_pred             EEeCCCcEEEEEEEEEECC
Confidence            9999999999998888643

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.67  E-value=3.3e-16  Score=106.92  Aligned_cols=92  Identities=24%  Similarity=0.291  Sum_probs=76.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++........++.  ...++     +|.|.++..+|+|.|+|.
T Consensus         8 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~--~~~~~-----~L~i~~v~~~d~G~Y~C~   80 (100)
T 2edj_A            8 PPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFTFPGRDPRAT--IQEQG-----TLQIKNLRISDTGTYTCV   80 (100)
T ss_dssp             SCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSEESSSCSSCE--ECTTC-----CEEEESCCTTTCCEEEEE
T ss_pred             CCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEECCCCCCCEE--EcCCC-----EEEEccCCcccCEEEEEE
Confidence            77888888888999999999999999999999999997554332233322  23344     899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEec
Q psy15734        255 AVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.|..|.....+.|.|..+
T Consensus        81 a~n~~g~~~~~~~l~V~~~   99 (100)
T 2edj_A           81 ATSSSGETSWSAVLDVTES   99 (100)
T ss_dssp             EECSSCCCBCCEEEEEESC
T ss_pred             EEcCCCCEEEEEEEEEecC
Confidence            9999999999999988764

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.67  E-value=1.9e-16  Score=128.62  Aligned_cols=224  Identities=14%  Similarity=0.134  Sum_probs=79.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      .|+.+.|.+|+++.|.|.+.-..+..+.|.-.-...        ..       ...+.....|.|.+++..  |.|.|++
T Consensus         5 ~P~~~~V~~G~sv~l~Cs~~c~~p~~~~~~t~l~~~--------~~-------~~~g~~~~~~~l~~v~~~--~~y~C~~   67 (291)
T 1mq8_A            5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKK--------EL-------LLPGNNRKVYELSNVQED--SQPMCYS   67 (291)
T ss_dssp             ECSEEEECTTCEEEEEEEECCSSCSEEEEECSSCCC--------CC-------CCSCSSEEEEEEESCCSC--CCCEEEE
T ss_pred             eCCccEEcCCCeEEEEEeCCCCCCccceEEecCCCc--------cc-------ccCCCceEEEEEEecccC--CeEEEEE
Confidence            356789999999999999964333348885311110        00       001111125788888743  4699999


Q ss_pred             ecCC-CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CCC--ceEEEcCCCceeecCCe--------eC
Q psy15734        107 NTVP-MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP--YVAWRREDGKAINYNGE--------LV  174 (314)
Q Consensus       107 ~~~~-~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~~~W~~~~~~~~~~~~~--------~~  174 (314)
                      ...+ .....+.|.|+.+|....... ....+.+|+.++|.|.+.+. |..  .|+|++ ++..+.....        +.
T Consensus        68 ~~~~~~~~~~v~l~V~~~P~~v~I~~-~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~k-g~~~l~~~~~~~~~~~~~l~  145 (291)
T 1mq8_A           68 NCPDGQSTAKTFLTVYWTPERVELAP-LPSWQPVGKNLTLRCQVEGGAPRANLTVVLLR-GEKELKREPAVGEPAEVTTT  145 (291)
T ss_dssp             ECSSCEEEEECEEEECBCCSCCCBCC-CCSBCCSSCCCEEEEEECCCBSTTTEEEEEES-SSSEEEEEECCBTTEEEEEE
T ss_pred             EcCCccEEEEEEEEEecCCCCCEEec-CCccccCCCCEEEEEEecCccCCCCcEEEEEE-CCEEeecccCCCCCceEEEE
Confidence            6543 334556788888877544332 22347889999999999875 544  589999 5555431110        00


Q ss_pred             --------------------CC----e---------E--EcC-CC------cceeecCccEEEEEEEeecCCc---eeEE
Q psy15734        175 --------------------PP----M---------L--TIP-NQ------LEGAFVSQTVELHCHTEAFPAS---LNYW  209 (314)
Q Consensus       175 --------------------~p----~---------~--~~~-~~------~~~v~~g~~~~l~C~~~g~p~p---~~~W  209 (314)
                                          .+    .         +  ..+ +.      ...+.+|+++.|.|.+.|.|++   .++|
T Consensus       146 ~~~~~~D~g~~~~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w  225 (291)
T 1mq8_A          146 VLVRRDHHGANFSCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHL  225 (291)
T ss_dssp             CCCSSSCSSCEEEEEEEEECGGGTSCEEEECCCCEECBC-----------------------------------------
T ss_pred             eeeeeccCCceEEEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEE
Confidence                                00    0         0  001 11      1146789999999999998665   5788


Q ss_pred             ecCCCeeeecCCceeeeEeeCCeeeEEEEEEeec---CCCC--CeEEEEEEeeCCCCceeEEEEEEEecCCCeeEE
Q psy15734        210 TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSI---LSHQ--FGSYRCVAVNALGETDGFIKVYVNLVDGDIFQI  280 (314)
Q Consensus       210 ~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~---~~~d--~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~  280 (314)
                      ++++.. +....    . ..+.     .+.+...   .++|  .+.|+|.|.|.....+....|.|+..|.+.+++
T Consensus       226 ~~~g~~-l~~~~----~-~~g~-----~~~~~~~~~~~~~~~~~~~~~C~~~~~~~~~~~~~~l~v~~~~~~~~~~  290 (291)
T 1mq8_A          226 ALGDQR-LNPTV----T-YGND-----SFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQTVTIYSFPAPNVIL  290 (291)
T ss_dssp             ----------------------------------------------------------------------------
T ss_pred             EECCEe-cCcee----e-ecCC-----eEEEEEecceeEcCCCCEEEEEEEEeCCcceEEEEEEEEEcCCCccEEe
Confidence            886433 32211    0 0111     2223222   3433  567889998866666777788888877776654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=99.67  E-value=1.2e-15  Score=118.99  Aligned_cols=129  Identities=19%  Similarity=0.315  Sum_probs=96.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecC-CCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSIL-SHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~-~~d~G~Y~C  253 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.+.+.|++++. .+.. .........++  ..+.|.|.++. .+|+|.|+|
T Consensus         6 ~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~k~~~-~~~~-~~~~~~~~~~~--~~~~L~i~~v~~~~d~G~Y~C   81 (212)
T 2yd6_A            6 PPRFTRTPVDQTGVSGGVASFICQATGDPRPKIVWNKKGK-KVSN-QRFEVIEFDDG--SGSVLRIQPLRTPRDEAIYEC   81 (212)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETTE-ECCC-TTEEEEEEGGG--TEEEEEECSCCTTTTCEEEEE
T ss_pred             CCeEEeCcceeEEecCCeEEEEEEEeeCCCCEEEEEECCc-CCCC-CceeEEEEcCC--CceEEEEeccCCCCCCeEEEE
Confidence            5778888888899999999999999999999999999744 3332 22222222221  13489999994 999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecCC-----CeeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        254 VAVNALGETDGFIKVYVNLVDG-----DIFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~-----~~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|.|..|.....+.|.|...+.     +.+..    ..+..++...+.|.+.+.|.|.+.|..
T Consensus        82 ~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v~W~~  144 (212)
T 2yd6_A           82 VASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEITWFK  144 (212)
T ss_dssp             EEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             EEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeEEEEE
Confidence            9999999888888888876421     22222    123345556799999999999999954

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=99.67  E-value=4.2e-16  Score=128.56  Aligned_cols=130  Identities=16%  Similarity=0.167  Sum_probs=99.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.+.+.|++++..+.....++.+....++   .+.|.|.+++.+|+|.|+|.
T Consensus         4 ~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~---~~~L~i~~v~~~d~G~Y~C~   80 (305)
T 2nzi_A            4 APHFKEELRNLNVRYQSNATLVCKVTGHPKPIVKWYRQGKEIIADGLKYRIQEFKGG---YHQLIIASVTDDDATVYQVR   80 (305)
T ss_dssp             CCEEEECCCCEEECTTCCEEEEEEEECSSCCEEEEEETTEECCCCSSSEEEEEETTT---EEEEEESSCCGGGCSEEEEE
T ss_pred             CCeeeecccceEEeCCCcEEEEEEEeCCCCCeEEEEECCEEcccCCCeEEEEECCCC---EEEEEEccCChhhCeEEEEE
Confidence            678888888899999999999999999999999999975544433444444433333   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCee-------EEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDIF-------QIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~~-------~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|..|.....+.|.|...+....       ....+..++...+.|.+.+.|.|.+.|..
T Consensus        81 a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i~W~~  140 (305)
T 2nzi_A           81 ATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVITWQK  140 (305)
T ss_dssp             EEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEEEEEE
T ss_pred             EEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEEEEEE
Confidence            999999888888888876532110       01123345566799999999999999964

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=99.67  E-value=1.2e-15  Score=126.13  Aligned_cols=168  Identities=13%  Similarity=0.095  Sum_probs=112.5

Q ss_pred             ceeEEecCceEEEEEEec-ccCCCceEEEcCCCceeecCCeeC-------------------------------------
Q psy15734        133 TDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELV-------------------------------------  174 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~-~~p~p~~~W~~~~~~~~~~~~~~~-------------------------------------  174 (314)
                      ....+.+|+.+.|.|... +.|.+.+.|++ ++..+.......                                     
T Consensus         9 ~~~~v~eg~~v~l~~~~~~~~p~~~v~W~k-~~~~i~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~~~n~~g~~~s~   87 (312)
T 2y23_A            9 VVVNVDDDGVISLNFECDKMTPKSEFSWSK-DYVSTEDSPRLEVESKGNKTKMTFKDLGMDDLGIYSCDVTDTDGIASSY   87 (312)
T ss_dssp             CEEEECTTCCEEEEEECSSCCTTCCEEEEE-TTEECTTCTTEEEEEETTEEEEEESSCCGGGCEEEEEEESSSCCCCEEE
T ss_pred             eeEEEecCCeEEEEEEEeCCCCCcEEEEEE-CCEECCCCCCEEEEEeCCEEEEEECcCCccCCEEEEEEEEeCCCcEEEE
Confidence            345688999999998876 56899999999 666554221110                                     


Q ss_pred             ------------------CCeEEcCC-CcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeee
Q psy15734        175 ------------------PPMLTIPN-QLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC  234 (314)
Q Consensus       175 ------------------~p~~~~~~-~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~  234 (314)
                                        +|.+...+ ....+.+|+++.|.|.+. +.|.+.+.|+++ +..+....++.+......  .
T Consensus        88 ~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~-~~~i~~~~~~~~~~~~~~--~  164 (312)
T 2y23_A           88 LIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNT--G  164 (312)
T ss_dssp             EECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEEEEEET-TEEECSSSSCEEEEETTT--T
T ss_pred             EEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEEEEEEC-CEECeeCCcEEEEEccCC--C
Confidence                              12111111 256788999999999999 899999999997 455555555555433212  1


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE-------------------ecCCCeeEE---EEccccccEeEE
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN-------------------LVDGDIFQI---RKMSRLHMGAYL  292 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~-------------------~~~~~~~~~---~~~~~~~~g~~~  292 (314)
                      ..+|.|.++..+|+|.|+|.|.|..+.....  +.+.                   ...++.+..   ..+..++...+.
T Consensus       165 ~~~L~i~~~~~~d~G~Y~C~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~v~~G~~~~l~  242 (312)
T 2y23_A          165 IIEMFMEKLQDEDEGTYTFQLQDGKATNHST--VVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLK  242 (312)
T ss_dssp             EEEEEESCCCGGGCEEEEEEEESSSCEEEEE--EEECTHHHHHHHHHHHHHHHHHHHHHSSEEEEEEEEEEETTTEEEEE
T ss_pred             EEEEEEccCCcccCEeEEEEEEeCCceEEEE--EEEcchhhhhhcccccccccchhhccCCceeecceEEEeCCCEEEEE
Confidence            2479999999999999999998755443333  3331                   011122211   234455667799


Q ss_pred             EEEeeccCC-Cccce
Q psy15734        293 CIASNGVVP-SVSHR  306 (314)
Q Consensus       293 C~a~~~~~~-~~~w~  306 (314)
                      |.+.+.|+| .+.|.
T Consensus       243 C~~~~~p~~~~v~W~  257 (312)
T 2y23_A          243 CKVANIKKETHIVWY  257 (312)
T ss_dssp             EEEESCCSSCEEEEE
T ss_pred             EEEcCCCCCCEEEEe
Confidence            999999888 99994

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=99.66  E-value=1.8e-15  Score=123.88  Aligned_cols=171  Identities=14%  Similarity=0.143  Sum_probs=116.1

Q ss_pred             eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCcee----ecCCeeC-----------------------
Q psy15734        122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAI----NYNGELV-----------------------  174 (314)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~----~~~~~~~-----------------------  174 (314)
                      .+|.+..  .+....+.+|+.+.|.|.+.+    .+.|++ ++..+    ..+..+.                       
T Consensus        11 ~~P~i~~--~~~~~~v~~G~~v~l~C~~~~----~i~W~~-~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~ng~~~~   83 (290)
T 2o26_X           11 SPPSIHP--AQSELIVEAGDTLSLTCIDPD----FVRWTF-KTYFNEMVENKKNEWIQEKAEATRTGTYTCSNSNGLTSS   83 (290)
T ss_dssp             -CCEESS--CSSEEEEETTSCEEEEEECTT----EEEEEE-ECSSSCEEEECSSEEEETTCCGGGCEEEEEEESSSCEEE
T ss_pred             CCCEEeC--CCCeEEEcCCCcEEEEECCCC----cEEEec-CCcceeeecCCCceEEEeccCHHhCeEEEEEeeCCccEE
Confidence            4565553  346778999999999999987    899999 44433    1111110                       


Q ss_pred             -------CCeEEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        175 -------PPMLTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       175 -------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                             +|.+...+....+.+|+.+.|.|.+.+ |. +.+.|++.++..+....+  .....++     .|.|.++..+
T Consensus        84 ~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v~W~~~~g~~l~~~~~--~~~~~~~-----~L~i~~v~~~  155 (290)
T 2o26_X           84 IYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQYSLIECDGKSLPTDLT--FVPNPKA-----GITIKNVKRA  155 (290)
T ss_dssp             EEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEEEEEETTSCCCCTTCE--EEEETTT-----EEEEESCCGG
T ss_pred             EEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceEEEEeCCCcCCCCCCc--eeeCCCC-----CEEEecccHH
Confidence                   333334556667889999999999996 77 999996444555443332  2223344     8999999999


Q ss_pred             CCe-EEEEEEeeCCCCc-eeEEEEEEEec--CCCeeEEE----EccccccEeEEEEEeeccCCC-ccceE
Q psy15734        247 QFG-SYRCVAVNALGET-DGFIKVYVNLV--DGDIFQIR----KMSRLHMGAYLCIASNGVVPS-VSHRI  307 (314)
Q Consensus       247 d~G-~Y~C~a~n~~g~~-~~~~~l~V~~~--~~~~~~~~----~~~~~~~g~~~C~a~~~~~~~-~~w~v  307 (314)
                      |+| .|+|.|.|..+.. +..+.|.|...  ..+.+.+.    .+..++...+.|.+.+.|.|. +.|..
T Consensus       156 d~G~~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~~i~W~~  225 (290)
T 2o26_X          156 YHRLCVRCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSVNSMWLK  225 (290)
T ss_dssp             GTTCEEEEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTCEEEEEE
T ss_pred             HCCCEEEEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcceeEEEec
Confidence            999 9999999986553 34577777632  22323221    233445567999999999886 99963

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.66  E-value=2e-16  Score=110.03  Aligned_cols=98  Identities=16%  Similarity=0.231  Sum_probs=79.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++.. +............++   .++|.|.++..+|+|.|+|.
T Consensus         9 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~-~~~~~~~~~~~~~~~---~~~L~i~~v~~~D~G~Y~C~   84 (110)
T 2dm3_A            9 RPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP-VRPDSAHKMLVRENG---VHSLIIEPVTSRDAGIYTCI   84 (110)
T ss_dssp             CCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSB-CCCCSSEEEEECTTS---CEEEEESSCCGGGCSBBCEE
T ss_pred             CCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEE-CCCCCceEEEEecCC---eEEEEEeeCCcccCEEEEEE
Confidence            78888888889999999999999999999999999997443 333333332222222   34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.|..|.....+.|.|..++.+
T Consensus        85 a~n~~g~~~~~~~l~V~~~p~~  106 (110)
T 2dm3_A           85 ATNRAGQNSFSLELVVAAKESG  106 (110)
T ss_dssp             EECSSCEEEECCEEEEECCCCS
T ss_pred             EECCCCEEEEEEEEEEeCCCCC
Confidence            9999999999999999887654

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=99.65  E-value=2.7e-15  Score=121.32  Aligned_cols=211  Identities=18%  Similarity=0.187  Sum_probs=108.2

Q ss_pred             cceEEEcCCcEEEEEEecC--CCceEEEEEEcCc-e---eEEEeee------eeeecCcCEEEEeCC-ceeEEEEEeeec
Q psy15734         29 ANVTATVGKEALMACVVEN--LREYKVAWVKMIT-Q---TILSIHH------KVVTQNKRVSITFND-HRSWFLHLRDVQ   95 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~-~---~~~~~~~------~~~~~~~~~~~~~~~-~~~~~L~i~~~~   95 (314)
                      ..+.+.+|++++|.|.+.+  .....+.|||... .   .+.....      ......+|+.+..+. ...++|.|.+++
T Consensus        31 ~~~~~~~G~~v~L~C~~s~~~~~~~~v~W~rq~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~  110 (267)
T 3u1s_H           31 GAEVKKPGSSVKVSCKASGNSFSNHDVHWVRQATGQGLEWMGWMSHEGDKTGLAQKFQGRVTITRDSGASTVYMELRGLT  110 (267)
T ss_dssp             CCEEECTTCCEEEEEEEGGGGGGTSEEEEEEECTTSCCEEEEEECTTSSCEEECGGGTTTEEEEECGGGCCEEEEECSCC
T ss_pred             CCEEEeCCCcEEEEEEeeCCccCCCEEEEEEECCCCCcEEEEEEeCCCCceecCcccCCcEEEEEcCCCCEEEEEECCCC
Confidence            4578999999999999964  3457899998532 1   1111110      011124688776654 245689999999


Q ss_pred             CCCCeEEEEEEecCCCcceeEEEEEEe----CCceeeecCcceeE--EecCceEEEEEEecccCCCceEEEcCCCceeec
Q psy15734         96 ETDRGWYMCQINTVPMTSQKGYLQVVV----PPRILLDRTSTDVV--VREGTEVTLECSAVGYPEPYVAWRREDGKAINY  169 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~~~~~~l~v~~----~p~~~~~~~~~~~~--~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~  169 (314)
                      .+|+|.|.|.+.+....     .....    .|......  ....  ...|....|.........|.+.-..        
T Consensus       111 ~~DsG~Y~C~~~~~~~~-----~~~~~~~~~~~~~~~~~--~~~~~~~~~g~~t~l~V~~~~~~~P~v~~~~--------  175 (267)
T 3u1s_H          111 ADDTAIYYCLTGSKHRL-----RDYFLYNEYGPNYEEWG--DYLATLDVWGHGTAVTVSSASTKGPSVFPLA--------  175 (267)
T ss_dssp             GGGCEEEEEEEEEEEEE-----EEEEECCTTSSCEEEEE--EEEEEEEEECCCEEEEECCCCCBCCEEEEEC--------
T ss_pred             hhhCEEEEEEECcCCcc-----ccccccccccccccccc--ccccccceecCCeEEEecCCCCCCCEEEEec--------
Confidence            99999999998521000     00000    00000000  0000  0012222222221111223332211        


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEee-cC-CceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCC
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEA-FP-ASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSH  246 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p-~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~  246 (314)
                                  + ...+..|+.+.|.|.+.+ .| ++.+.|  ++............... ++.|...+.|.|.....+
T Consensus       176 ------------~-~~~~~~g~~~~l~C~~~~~~p~~~~v~W--~~~~~~~~~~~~~~~~~~~g~y~~~s~L~i~~~~~~  240 (267)
T 3u1s_H          176 ------------P-SSKSTSGGTAALGCLVKDYFPEPVTVSW--NSGALTSGVHTFPAVLQSSGLYSLSSVVTVPSSSLG  240 (267)
T ss_dssp             ------------C-CGGGEETTEEEEEEEEEEEBSSCCEEEE--GGGTBCTTEEECCCEECTTSCEEEEEEEEEEGGGGG
T ss_pred             ------------C-CcccCCCCcEEEEEEEeEEECCCeEEEE--CCcccCCCEEeCCceECCCCCEEEEEEEEECchhcC
Confidence                        0 011245666666676665 33 235566  22221110000001112 233667789999999988


Q ss_pred             CCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        247 QFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      | |.|+|.|.+..+.......|.+
T Consensus       241 ~-~~ytC~v~h~~~~~~~~~~~~~  263 (267)
T 3u1s_H          241 T-QTYICNVNHKPSNTKVDKKVEP  263 (267)
T ss_dssp             T-CCCEEEEEEGGGTEEEEEECCC
T ss_pred             C-CEEEEEEEECCCCcceEEEccc
Confidence            9 9999999998766555544443

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=99.65  E-value=3.3e-17  Score=137.34  Aligned_cols=174  Identities=16%  Similarity=0.096  Sum_probs=115.4

Q ss_pred             CceeeecCcceeEEecCceEEEEEEec-------ccCCCceEEEcCCCcee--ecC---------CeeC-----------
Q psy15734        124 PRILLDRTSTDVVVREGTEVTLECSAV-------GYPEPYVAWRREDGKAI--NYN---------GELV-----------  174 (314)
Q Consensus       124 p~~~~~~~~~~~~~~~g~~~~l~C~~~-------~~p~p~~~W~~~~~~~~--~~~---------~~~~-----------  174 (314)
                      |.+...  +....+.+|+.+.|.|.+.       +.|.+.+.|++ ++..+  ...         +.+.           
T Consensus        19 p~~~~~--~~~~~v~~G~~v~L~C~~~~~~~~~~~~p~~~v~W~k-~~~~~~~~~~~~~~~~~~~~~L~i~~v~~~D~G~   95 (339)
T 3o4o_C           19 RFRGRH--YKREFRLEGEPVALRCPQVPYWLWASVSPRINLTWHK-NDSARTVPGEEETRMWAQDGALWLLPALQEDSGT   95 (339)
T ss_dssp             EEEEEC--SCCEEEETTBCCEEECTTSCSSCCSTTSSCCBCCCEE-SSCCSCCSCCSSSCEEEETTEEEESSBCTTCCEE
T ss_pred             HhhCcC--ceEEEEECCccEEEEeccccccccccCCCCceEEEEE-CCCCcccCccccccEEeeCCeEEECCCCcccCEE
Confidence            444443  4677899999999999998       88999999999 45442  111         1110           


Q ss_pred             --------------CCeEE--cC--------CCcceeecCccEEEEEE-----EeecCCceeEEecCCCeeeecCCceee
Q psy15734        175 --------------PPMLT--IP--------NQLEGAFVSQTVELHCH-----TEAFPASLNYWTNEKGDMIITGDDYED  225 (314)
Q Consensus       175 --------------~p~~~--~~--------~~~~~v~~g~~~~l~C~-----~~g~p~p~~~W~~~~~~~~~~~~~~~~  225 (314)
                                    ...+.  ..        .....+.+|+.+.|.|.     +.|.|.+.+.|++++..+.....++..
T Consensus        96 Y~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v~W~k~g~~~~~~~~~~~~  175 (339)
T 3o4o_C           96 YVCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKIQWYKDSLLLDKDNEKFLS  175 (339)
T ss_dssp             EECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCBCCEESSCBCCTTCSSEEE
T ss_pred             EEEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceEEEecCCeeCCCCCceeEE
Confidence                          00111  11        11235788999999999     889999999999974433322233322


Q ss_pred             eEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC----ceeEEEEEEEecC---CCeeEEE----EccccccEeEEEE
Q psy15734        226 SRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE----TDGFIKVYVNLVD---GDIFQIR----KMSRLHMGAYLCI  294 (314)
Q Consensus       226 ~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~~---~~~~~~~----~~~~~~~g~~~C~  294 (314)
                      . ...+     .|.|.++..+|+|.|+|.|.|..|.    ....+.|.|...+   .+.+...    .+..++...+.|.
T Consensus       176 ~-~~~~-----~L~i~~v~~~d~G~Y~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~  249 (339)
T 3o4o_C          176 V-RGTT-----HLLVHDVALEDAGYYRCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCK  249 (339)
T ss_dssp             C-TTSS-----EEEESSCCGGGCEEEEEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCC
T ss_pred             c-CCcc-----eEEEcccCHhhCeEEEEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEE
Confidence            1 1222     8999999999999999999998874    4567777777543   1222211    1223344469999


Q ss_pred             E---eecc-CCCccce
Q psy15734        295 A---SNGV-VPSVSHR  306 (314)
Q Consensus       295 a---~~~~-~~~~~w~  306 (314)
                      +   .+.| ++.+.|.
T Consensus       250 ~~~~~g~P~~~~v~W~  265 (339)
T 3o4o_C          250 VFLGTGTPLTTMLWWT  265 (339)
T ss_dssp             EEESSSCCSSCEEEEE
T ss_pred             EECCCCCCCCceEEEE
Confidence            9   7888 7788885

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.65  E-value=9.9e-16  Score=107.87  Aligned_cols=94  Identities=15%  Similarity=0.137  Sum_probs=74.4

Q ss_pred             CCeEEcC---CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIP---NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~---~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +|.|..+   +....+.+|+++.|.|.+.|.|.|.+.|++++.. +. ..++.+... +.   .+.|.|.++..+|+|.|
T Consensus        21 ~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g~~-l~-~~~~~~~~~-~~---~~~L~i~~~~~~D~G~Y   94 (118)
T 2e7c_A           21 PPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGGAP-LD-TSRVHVRTS-DF---DTVFFVRQAARSDSGEY   94 (118)
T ss_dssp             EEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETTEE-CC-CSSCEEEEC-SS---EEEEEESSCCTTTCEEE
T ss_pred             CCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECCEE-CC-CCcEEEEEC-CC---eEEEEECCCChhcCEEE
Confidence            6666543   4667889999999999999999999999997443 32 334433321 11   34799999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEecC
Q psy15734        252 RCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      +|.|.|..|.....+.|.|...|
T Consensus        95 ~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           95 ELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             EEEEECSSCEECCEEEEEEECCC
T ss_pred             EEEEEeCCCeEEEEEEEEEEcCC
Confidence            99999999999999999998765

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.65  E-value=1.1e-15  Score=103.96  Aligned_cols=93  Identities=19%  Similarity=0.299  Sum_probs=76.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+    .++|.|.++..+|+|.|+|.
T Consensus         6 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~-g~~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~C~   80 (99)
T 3puc_A            6 KPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKD-GKAITQGGKYKLSEDKG----GFFLEIHKTDTSDSGLYTCT   80 (99)
T ss_dssp             EEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEET-TEECCSSSSEEEEEETT----EEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEEC-CEECcCCCCEEEEEeCC----EEEEEECCCCcccCEEEEEE
Confidence            56777777888999999999999999999999999996 44454455555432221    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|.....+.|.|..
T Consensus        81 a~n~~g~~~~~~~l~V~~   98 (99)
T 3puc_A           81 VKNSAGSVSSSCKLTIKA   98 (99)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEeCCCcEeEEEEEEEEe
Confidence            999999999988888863

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=99.65  E-value=4.4e-16  Score=125.87  Aligned_cols=117  Identities=19%  Similarity=0.215  Sum_probs=82.3

Q ss_pred             EEecCceEEEEEEecc-cCCC--ceEEEcCCCceeec---------------------CCe--eC---------------
Q psy15734        136 VVREGTEVTLECSAVG-YPEP--YVAWRREDGKAINY---------------------NGE--LV---------------  174 (314)
Q Consensus       136 ~~~~g~~~~l~C~~~~-~p~p--~~~W~~~~~~~~~~---------------------~~~--~~---------------  174 (314)
                      .+.+|+.+.|.|.+.+ .|.|  .+.|++ ++..+..                     .+.  +.               
T Consensus        14 ~v~~G~~v~l~C~~~g~~p~p~~~v~W~k-~~~~l~~~~~~~~~~~~~~~~~~~~~~d~g~g~Y~C~a~n~~~~~~~~~~   92 (265)
T 2oz4_A           14 VLEVDTQGTVVCSLDGLFPVSEAQVHLAL-GDQRLNPTVTYGNDSFSAKASVSVTAEDEGTQRLTCAVILGNQSQETLQT   92 (265)
T ss_dssp             EEETTEEEEEEEEEESCSCGGGCEEEEEE-TTEECCCEEEECSSEEEEEEEEEECGGGCEEEEEEEEEEETTEEEEEEEE
T ss_pred             eEecCCCEEEEEEccCCCCCcceEEEEEe-CCEECCceEeeCCCeEEEEeecccccccCCcceEEEEEecCCCCcEEEEE
Confidence            5789999999999998 7777  999999 5544321                     111  11               


Q ss_pred             -------CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        175 -------PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       175 -------~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                             +|.+.  .....+.+|+.+.|.|.+.  |.|.+.|  + +..+....            ..+.|.|..+..+|
T Consensus        93 l~V~~~p~p~~~--~~~~~v~~G~~v~l~C~~~--p~~~i~W--~-g~~~~~~~------------~~~~l~i~~~~~~~  153 (265)
T 2oz4_A           93 VTIYSFPAPNVI--LTKPEVSEGTEVTVKCEAH--PRAKVTL--N-GVPAQPLG------------PRAQLLLKATPEDN  153 (265)
T ss_dssp             EEEECCCCCEEE--ESCSEEETTCEEEEEEECC--TTSEEEE--S-SCSSSCCS------------SEECCEEECCGGGT
T ss_pred             EEEeCCCCceee--cCCceecCCCcEEEEEEcc--CCCEEEE--C-CEEccCCC------------CcEEEEEccccccC
Confidence                   23333  2345678899999999999  9999999  3 33331111            12378899999999


Q ss_pred             CeEEEEEEeeCC-CCce---eEEEEEEEe
Q psy15734        248 FGSYRCVAVNAL-GETD---GFIKVYVNL  272 (314)
Q Consensus       248 ~G~Y~C~a~n~~-g~~~---~~~~l~V~~  272 (314)
                      +|.|+|.|.|.. |...   ..+.|.|..
T Consensus       154 ~g~Y~C~a~n~~~g~~~~~s~~~~l~V~~  182 (265)
T 2oz4_A          154 GRSFSCSATLEVAGQLIHKNQTRELRVLY  182 (265)
T ss_dssp             TEEEEEEEEEECSSSEEEEEEEEEEEEEE
T ss_pred             CceEEEEEEcCCCCCcccccccEEEEEEe
Confidence            999999998644 6655   667777754

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=99.65  E-value=1.8e-15  Score=115.97  Aligned_cols=128  Identities=13%  Similarity=0.176  Sum_probs=93.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      |+.+...+....+.+|+++.|.|.+.+.| .+.+.|++.++..+. ...++.+......   ...|.|.++..+|+|.|+
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~---~~~L~i~~~~~~d~G~Y~   78 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD---SSTLTIYNANIDDAGIYK   78 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETT---EEEEEECSCCGGGCEEEE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCceEEEEeCCCccccCCCCeEEEEECCCC---ceEEEEccCCcccCEEEE
Confidence            45677788888999999999999999987 889999994454444 3444443322222   349999999999999999


Q ss_pred             EEEeeCCC-CceeEEEEEEEecCCCeeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        253 CVAVNALG-ETDGFIKVYVNLVDGDIFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       253 C~a~n~~g-~~~~~~~l~V~~~~~~~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.+.|..+ .....+.|.|..+  +.+..    ..+..++...+.|.+.+.|.|.+.|..
T Consensus        79 C~~~~~~~~~~~~~~~l~v~~~--p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v~W~~  136 (191)
T 1epf_A           79 CVVTAEDGTQSEATVNVKIFQK--LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKH  136 (191)
T ss_dssp             EEEEETTTEEEEEEEEEEEECC--SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEE
T ss_pred             EEEEcCCCcceEEEEEEEeecC--ceEecCCCcEeecCCCeEEEEEEECCCCCCEEEEEE
Confidence            99999984 4556666666544  33322    234455566799999999999999953

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=99.65  E-value=1.6e-15  Score=128.85  Aligned_cols=177  Identities=12%  Similarity=0.164  Sum_probs=101.4

Q ss_pred             ecCCcceE-EEcCCcEEEEEEecCC---C-ceEEEEEEcCceeEEEee-eeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         25 AEPVANVT-ATVGKEALMACVVENL---R-EYKVAWVKMITQTILSIH-HKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        25 ~~~~~~~~-v~~g~~~~l~C~~~~~---~-~~~v~W~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +.++.... +.+|++++|.|.+.+.   + ...|.|+++++....... ......++.+..      ...|.|.+++.+|
T Consensus       171 ~~~p~~~~~~~~g~~v~L~C~~~g~~P~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~------~s~L~I~~~~~~D  244 (376)
T 2aty_A          171 IFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTQPREEQFNSTFRS------VSELPIMHQDWLN  244 (376)
T ss_pred             EeCcCHHHceeeCCeeEEEEEEeccccCCCccEEEEEECCccccCcccCCCCcccCCcEEE------EEEEEechHhccC
Confidence            44454444 8899999999999876   2 247999996643211100 000011122221      2369999999999


Q ss_pred             CeEEEEEEecCCC-cceeEEE----EEEeCCceeeecCcceeEEecCceEEEEEEeccc-C-CCceEEEcCCCceeecCC
Q psy15734         99 RGWYMCQINTVPM-TSQKGYL----QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-P-EPYVAWRREDGKAINYNG  171 (314)
Q Consensus        99 ~G~Y~C~~~~~~~-~~~~~~l----~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p-~p~~~W~~~~~~~~~~~~  171 (314)
                      +|.|+|.+.+... ......+    .+..+|.+...+..  .....|+.++|.|.+.|. | .+.|.|++ ++..+    
T Consensus       245 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~--~~~~~g~~~~L~C~~~g~~P~~i~v~W~k-~g~~~----  317 (376)
T 2aty_A          245 GKEFKCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPP--KEQMAKDKVSLTCMITDFFPEDITVEWQW-NGQPA----  317 (376)
T ss_pred             CCEEEEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCC--HHHhcCCceEEEEEEEEeECCCcEEEEEE-CCEEC----
Confidence            9999999976532 1222222    23345555443311  112346667777777664 2 33666666 33221    


Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                                                                    ........... ++.|...+.|.|.....+|.|.
T Consensus       318 ----------------------------------------------~~~~~~~~~~~~dgty~~~s~L~i~~~~~~~~~~  351 (376)
T 2aty_A          318 ----------------------------------------------ENYKNTQPIMNTNESYFVYSKLNVQKSNWEAGNT  351 (376)
T ss_pred             ----------------------------------------------CCeEeCCceECCCCCEEEEEEEEEcHHHhCCCCc
Confidence                                                          11000111111 2235666789999988899999


Q ss_pred             EEEEEeeCCC
Q psy15734        251 YRCVAVNALG  260 (314)
Q Consensus       251 Y~C~a~n~~g  260 (314)
                      |+|.|.|..-
T Consensus       352 YtC~v~h~~l  361 (376)
T 2aty_A          352 FTCSVLHEGL  361 (376)
T ss_pred             EEEEEEeCCC
Confidence            9999999764

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.65  E-value=5.1e-16  Score=108.96  Aligned_cols=97  Identities=12%  Similarity=0.066  Sum_probs=72.8

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeec---CCceeEEecCCCeeeec--CCceeeeEe-eC-CeeeEEEEEEeecCCCCC
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAF---PASLNYWTNEKGDMIIT--GDDYEDSRL-IN-GYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~---p~p~~~W~~~~~~~~~~--~~~~~~~~~-~~-~~~~~s~L~i~~~~~~d~  248 (314)
                      +.|...+....+.+|++++|.|.+.|.   |.|.|.|+|++...+..  ..++.+... .. .......|.|.++..+|+
T Consensus         8 ~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~Da   87 (126)
T 2dav_A            8 ILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFA   87 (126)
T ss_dssp             CSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSC
T ss_pred             cEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccCCCCCceEEEccccccccccceEEEEEccCCcccC
Confidence            456667788899999999999999875   89999999963111111  223322211 11 111245999999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|+|+|.|..|..++.+.|.|..
T Consensus        88 G~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           88 GNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             EEEEEEEECSSCEEEECCEEEEEC
T ss_pred             EEEEEEEEeCCCcEEEEEEEEEEe
Confidence            999999999999999999999998

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=99.65  E-value=2e-15  Score=114.08  Aligned_cols=122  Identities=18%  Similarity=0.287  Sum_probs=87.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.+.+.+....+.+|+++.|.|.+.+.|.+. +.|++++ ..+..         .+.     .|.|.+++.+|+|.|+|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~~~W~~~~-~~~~~---------~~~-----~L~i~~~~~~d~G~Y~C   71 (175)
T 1fnl_A            7 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNE-SLISS---------QAS-----SYFIDAATVNDSGEYRC   71 (175)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETT-EEEES---------SCS-----EEEESSCCGGGCEEEEE
T ss_pred             CCEEEEcCCceeeeCCCcEEEEeeCCCCCCCcceEEEECC-EEccC---------Cce-----EEEEeCCCcccCEEEEE
Confidence            56777777777899999999999999999877 7899974 33322         122     99999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEec---------------------------------------------CCCeeEEEEcccccc
Q psy15734        254 VAVNALGETDGFIKVYVNLV---------------------------------------------DGDIFQIRKMSRLHM  288 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~---------------------------------------------~~~~~~~~~~~~~~~  288 (314)
                      .+.|..+....  .|.|...                                             ....|.+..+...|.
T Consensus        72 ~~~n~~~s~~~--~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~~~~~W~k~g~~~~~~~~~~~L~i~~v~~~d~  149 (175)
T 1fnl_A           72 QTNLSTLSDPV--QLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKDRKYFHHNSDFHIPKATLKDS  149 (175)
T ss_dssp             ECSSSCCCCCE--EEEEECSSEEEECSCSEEETTCCEEEEEEECTTCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGC
T ss_pred             EeeCCcccccE--EEEEeCCCceeeCCCceecCCCCEEEEEEcCCCCCceEEEEEECCeEccCCCCCCEEEEcccChhhC
Confidence            99996664443  3433210                                             122344555666777


Q ss_pred             EeEEEEEeeccCCCccceEEEEEEe
Q psy15734        289 GAYLCIASNGVVPSVSHRIMVTVHC  313 (314)
Q Consensus       289 g~~~C~a~~~~~~~~~w~v~l~v~~  313 (314)
                      |.|+|.|.|......+-.+.|.|+-
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~~  174 (175)
T 1fnl_A          150 GSYFCRGLVGSKNVSSETVNITITQ  174 (175)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             eEEEEEEEcCCCCccCccEEEEEeC
Confidence            7788888776656666677777653

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=99.64  E-value=7.5e-16  Score=129.58  Aligned_cols=114  Identities=13%  Similarity=-0.011  Sum_probs=75.7

Q ss_pred             cceeecCccEEEEEEE-----eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        184 LEGAFVSQTVELHCHT-----EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~-----~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ...+.+|+++.|.|.+     .|.|.|.+.|++++ ..+...  ..+. ..+.     .|.|.++..+|+|.|+|.|.|.
T Consensus       129 ~~~~~~g~~~~l~C~~~~~~~~g~p~~~v~W~k~~-~~l~~~--~~~~-~~~~-----~L~i~~v~~~d~G~Y~C~a~n~  199 (349)
T 4dep_C          129 HKLYIEYGIQRITCPNVDGYFPSSVKPTITWYMGC-YKIQNF--NNVI-PEGM-----NLSFLIALISNNGNYTCVVTYP  199 (349)
T ss_dssp             EEEETTCSEEEEECCSCTTSSCTTSCCEEEEEETT-EECCSC--SSEE-EETT-----EEEEESCCGGGCEEEEEEEEEE
T ss_pred             ceeeecCccEEEEcCCCcccccCCCCceEEEeeCC-EECCCc--ccee-ecCC-----EEEEeeeeecCCcEEEEEEEEe
Confidence            3467789999999985     78999999999974 433221  2221 2223     8999999999999999999998


Q ss_pred             C-CCc---eeEEEEEEEecC----CCeeEEE------EccccccEeEEEEEee----ccCCCccce
Q psy15734        259 L-GET---DGFIKVYVNLVD----GDIFQIR------KMSRLHMGAYLCIASN----GVVPSVSHR  306 (314)
Q Consensus       259 ~-g~~---~~~~~l~V~~~~----~~~~~~~------~~~~~~~g~~~C~a~~----~~~~~~~w~  306 (314)
                      . |..   ...+.|.|...+    .+.+...      .+..++...+.|.+.+    .|.|.+.|.
T Consensus       200 ~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v~W~  265 (349)
T 4dep_C          200 ENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEVWWT  265 (349)
T ss_dssp             ETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEEEEE
T ss_pred             eCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEEEEE
Confidence            7 443   566677776542    2222211      2233444569999994    577899994

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=99.64  E-value=3.3e-17  Score=128.20  Aligned_cols=181  Identities=15%  Similarity=0.177  Sum_probs=97.9

Q ss_pred             CCce-ecCCcceEEEcCCcEEEEEEecCCCc---eEEEEEEcCceeEEEe-eeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         21 MPRF-AEPVANVTATVGKEALMACVVENLRE---YKVAWVKMITQTILSI-HHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        21 ~p~~-~~~~~~~~v~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +|.+ +.+|....+.+|++++|.|.+.+.++   +.+.| + +....... .......++++.      ....|.|.+++
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p~~~~~v~W-~-~~~~~~~~~~~~~~~~~g~~~------~~~~L~I~~~~   74 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRDASGVTFTW-T-PSSGKSAVQGPPERDLCGCYS------VSSVLPGCAEP   74 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCB-S-SCSSCCCEECCCCCCSTTCCC------EEEECTTTHHH
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeECCCCeEEEE-c-CCCCCCcccCCceECCCCcEE------EEEEEEEeHHH
Confidence            3444 45577777899999999999988643   68999 4 32211000 000001111211      23479999999


Q ss_pred             CCCCeEEEEEEecCCCc-ceeEEEE---EEeCCceeeecCcceeEEecCceEEEEEEeccc-CC-CceEEEcCCCceeec
Q psy15734         96 ETDRGWYMCQINTVPMT-SQKGYLQ---VVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PE-PYVAWRREDGKAINY  169 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~-~~~~~l~---v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~-p~~~W~~~~~~~~~~  169 (314)
                      .+|+|.|+|.+.+.... .....+.   +..+|.+.... +....+..|+.+.|.|.+.|. |. +.+.|++ ++..   
T Consensus        75 ~~D~g~Y~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~-~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~k-~g~~---  149 (214)
T 1ow0_A           75 WNHGKTFTCTAAYPESKTPLTATLSKSGNTFRPEVHLLP-PPSEELALNELVTLTCLARGFSPKDVLVRWLQ-GSQE---  149 (214)
T ss_dssp             HHHTCEEEEEECCSSCSSCEEEEEECCSSCCCCEEEEEC-CCTTTTTSSSEEEEEEEEEEESSSCCEEEEEE-TTEE---
T ss_pred             cCCCCeEEEEEecCCCCCceeEeeccCCCCCCCEEEecC-CCHHHhccCCceEEEEEEeeeECCCcEEEEEE-CCEE---
Confidence            99999999999764322 1122221   12334433222 111113345555555555553 32 2555555 3222   


Q ss_pred             CCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce--eeeEe---eC-CeeeEEEEEEeec
Q psy15734        170 NGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY--EDSRL---IN-GYSCHMTLKIRSI  243 (314)
Q Consensus       170 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~--~~~~~---~~-~~~~~s~L~i~~~  243 (314)
                                                                     +......  .....   .+ .|...+.|.|...
T Consensus       150 -----------------------------------------------l~~~~~~~~~~~~~~~~~dgt~~~~s~l~v~~~  182 (214)
T 1ow0_A          150 -----------------------------------------------LPREKYLTWASRQEPSQGTTTFAVTSILRVAAE  182 (214)
T ss_dssp             -----------------------------------------------CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHH
T ss_pred             -----------------------------------------------CCCCceeecCCcccccCCCCcEEEEEEEEECHH
Confidence                                                           2111100  01111   22 2556678888877


Q ss_pred             CCCCCeEEEEEEeeCCCC
Q psy15734        244 LSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..+|.|.|+|.|.|....
T Consensus       183 ~~~~~~~ytC~v~n~~l~  200 (214)
T 1ow0_A          183 DWKKGDTFSCMVGHEALP  200 (214)
T ss_dssp             HHHHTCCEEEEEECTTCT
T ss_pred             HccCCCEEEEEEECCCCC
Confidence            777899999999997654

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=99.64  E-value=1.3e-15  Score=117.25  Aligned_cols=130  Identities=13%  Similarity=0.050  Sum_probs=95.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCC--ceeeeEeeCC---eeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGD--DYEDSRLING---YSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~---~~~~s~L~i~~~~~~d~  248 (314)
                      +|.|...+....+.+|+++.|.|.+. |.|.+.+.|++++ ..+....  ++.+....++   +...+.|.|.++..+|+
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v~W~~~g-~~l~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   80 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEVHWLRDG-QILELADSTQTQVPLGEDEQDDWIVVSQLRITSLQLSDT   80 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCCEEEETT-EECCSCEEEEEEEECSSSTTSEEEEEEEEEESSCCSTTC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEEEEEECC-EEcccCCCCceEEEEccccccceeeccEEEEEeccccCC
Confidence            57788888999999999999999999 9999999999974 4343331  2333322221   22246999999999999


Q ss_pred             eEEEEEEeeCCCCce-eEEEEEEEecCCCeeEE----EEccccccEeEEEEEeeccCC-CccceE
Q psy15734        249 GSYRCVAVNALGETD-GFIKVYVNLVDGDIFQI----RKMSRLHMGAYLCIASNGVVP-SVSHRI  307 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~-~~~~l~V~~~~~~~~~~----~~~~~~~~g~~~C~a~~~~~~-~~~w~v  307 (314)
                      |.|+|.|.|..|... ..+.|.|...|  .+..    ..+..++...+.|.+.+.|.| .+.|..
T Consensus        81 G~Y~C~~~~~~~~~~~~~~~l~V~~~p--~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  143 (195)
T 2c5d_C           81 GQYQCLVFLGHQTFVSQPGYVGLEGLP--YFLEEPEDRTVAANTPFNLSCQAQGPPEPVDLLWLQ  143 (195)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEECCSC--EEEECCCCEEECTTCCEEEEEEEECSSCCCEEEEEE
T ss_pred             cEEEEEEEeCCCceecccEEEEEecCC--eEEcCCCcEEEcCCCEEEEEeECCCCCCCCEEEEEE
Confidence            999999999877653 34777776553  2322    133445556799999999999 899963

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=99.64  E-value=1.2e-15  Score=115.99  Aligned_cols=128  Identities=16%  Similarity=0.115  Sum_probs=91.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.+.|.+.+.|+++ +..+....+.......+  ...+.|.|.++..+|+|.|+|.
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~k~-~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~Y~C~   78 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSEQ--HWIGFLSLKSVERSDAGRYWCQ   78 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEETT--EEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeEEEEEC-CeecCCCCceEEEecCC--CceEEEEEeecCcccCeEEEEE
Confidence            35667778888999999999999999999999999996 44443333333322221  2245999999999999999999


Q ss_pred             EeeCCCC-ceeEEEEEEEecCCCeeEE----EEccccccEeEEEEEeeccCC-CccceE
Q psy15734        255 AVNALGE-TDGFIKVYVNLVDGDIFQI----RKMSRLHMGAYLCIASNGVVP-SVSHRI  307 (314)
Q Consensus       255 a~n~~g~-~~~~~~l~V~~~~~~~~~~----~~~~~~~~g~~~C~a~~~~~~-~~~w~v  307 (314)
                      +.|..|. ....+.|.|..+|  .+..    ..+..++...+.|.+.+.|.| .+.|..
T Consensus        79 ~~~~~~~~~~~~~~l~V~~~p--~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v~W~~  135 (182)
T 1rhf_A           79 VEDGGETEISQPVWLTVEGVP--FFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWR  135 (182)
T ss_dssp             ESSCTTCEECCCEEEEEECSC--EEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEE
T ss_pred             EEcCCCcEEEEEEEEEEecCC--eEEecCcceEecCCCEEEEEeEecCCCCCCEEEEEc
Confidence            9998775 3567788887653  2222    134455556799999999988 899953

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=99.64  E-value=1e-15  Score=118.38  Aligned_cols=71  Identities=13%  Similarity=0.028  Sum_probs=56.0

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE--EccccccEeEEEEEeeccCCCccce
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR--KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      ..|.|.+++.+|+|.|+|.|.|..|.....+.|.|..++.-.....  .+..++...+.|.|.+.|.|.|.|.
T Consensus        69 ~~L~I~~v~~~D~G~Y~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v~W~  141 (203)
T 4fa8_A           69 FFLVVTAANISHDGNYLCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHVQWL  141 (203)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEEEEC
T ss_pred             EEEEEccCCHHHCeEEEEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEEEEE
Confidence            4899999999999999999999999999999998876532222111  2233344569999999999999995

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=99.64  E-value=1e-15  Score=117.95  Aligned_cols=88  Identities=15%  Similarity=0.151  Sum_probs=62.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.. .+.+|++++|.|.+.+ |.+.+.|++++....... .......     ....|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~-~~~~~~~-----~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 3p2t_A            5 KPTLWAEPGS-VISWGNSVTIWCQGTL-EAREYRLDKEESPAPWDR-QNPLEPK-----NKARFSIPSMTEDYAGRYRCY   76 (196)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTSCSCSEE-ECCCSSS-----SEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEccCCC-cCCCCCcEEEEeeCCC-CCCEEEEEECCCCCcccc-cccccCC-----ceEEEEeccCCcccCceEEEE
Confidence            5666666666 7899999999999998 778999999754332110 0000001     124899999999999999999


Q ss_pred             EeeCCC--CceeEEEEEE
Q psy15734        255 AVNALG--ETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g--~~~~~~~l~V  270 (314)
                      |.|..|  ..+..+.|.|
T Consensus        77 a~n~~g~~~~s~~~~l~V   94 (196)
T 3p2t_A           77 YRSPVGWSQPSDPLELVM   94 (196)
T ss_dssp             EEETTEEBCCCCCEEEEE
T ss_pred             EeCCCcccCCCccEEEEe
Confidence            999987  3344555555

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=99.64  E-value=1.8e-14  Score=120.44  Aligned_cols=135  Identities=19%  Similarity=0.261  Sum_probs=85.4

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--------------ceEEEEEEcCc---eeEEEeee-ee---ee-cCcCEEEE-e-
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--------------EYKVAWVKMIT---QTILSIHH-KV---VT-QNKRVSIT-F-   81 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--------------~~~v~W~~~~~---~~~~~~~~-~~---~~-~~~~~~~~-~-   81 (314)
                      .++..+.+.+|++++|.|.....+              ...+.||+...   ..+..... ..   .. ..++..+. . 
T Consensus       163 tq~~sv~a~~Ge~vtL~C~~S~~~~~~~a~~~~~~~~~~~~V~Wyrq~pg~~~~vliY~~g~~~q~~~~~~g~~~f~~~~  242 (401)
T 3f8u_B          163 THTPAPRVRLGQDALLDLSFAYMPPTSEAASSLAPGPPPFGLEWRRQHLGKGHLLLAATPGLNGQMPAAQEGAVAFAAWD  242 (401)
T ss_dssp             ESCSSCEEETTSCEEECCEEEECCCTTC------CCSCCCEEEEEEEETTEEEEEEEECTTSCCCCCCCCTTCEEEEEES
T ss_pred             CCCCcEEEeCCCCEEEEEeCCCCcccccccccccccCCceEEEEEEecCCCCcEEEEEeCCCccccccccCCeEEEEeec
Confidence            466789999999999999985321              46899998532   12222111 10   00 11122121 1 


Q ss_pred             ------CCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCc-eEEEEEEeccc-
Q psy15734         82 ------NDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGT-EVTLECSAVGY-  152 (314)
Q Consensus        82 ------~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~-~~~l~C~~~~~-  152 (314)
                            ...++++|.|.+++.+|+|.|+|.+.+. +.....+.|.|.++|.+...+.. ...+..|+ .+.|.|.+.+. 
T Consensus       243 ~~~~~g~~~g~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~-~~~~~~G~~~vtL~C~a~Gfy  321 (401)
T 3f8u_B          243 DDEPWGPWTGNGTFWLPRVQPFQEGTYLATIHLPYLQGQVTLELAVYKPPKVSLMPAT-LARAAPGEAPPELLCLVSHFY  321 (401)
T ss_dssp             CCCSSCCEEEEEEEEETTCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCEEEEESSS-CCCCCTTCCCCCEEEEEEEEB
T ss_pred             ccccccccCCcEEEEECcCCHhhCceEEEEEEecccceeEEEEEeeccCCeEeeccCc-ceeecCCCccEEEEEEecCCc
Confidence                  1124568999999999999999999764 33345567888888887654311 11134565 78889988875 


Q ss_pred             CC--CceEEE-c
Q psy15734        153 PE--PYVAWR-R  161 (314)
Q Consensus       153 p~--p~~~W~-~  161 (314)
                      |.  +.+.|. +
T Consensus       322 P~~~~~VtW~~r  333 (401)
T 3f8u_B          322 PSGGLEVEWELR  333 (401)
T ss_dssp             SSTTCEEEEEEE
T ss_pred             CCCCcEEEEEec
Confidence            55  678885 5

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.64  E-value=1.5e-15  Score=104.09  Aligned_cols=87  Identities=15%  Similarity=0.154  Sum_probs=67.5

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeee-EeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS-RLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~-~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ..|+.+.|.|.+.|.|.|.+.|+++ +..+......... ...+.....+.|.|.++..+|+|.|+|.|.|..|....++
T Consensus        14 ~~~~~~~~~c~v~G~P~P~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N~~G~~~~~~   92 (103)
T 1wwb_X           14 TSDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             eECcEEEEEEEEEEeCCCEEEEEEC-CEECCCCCcEeEEEEecCCcEEEEEEEECCCCcccCEEEEEEEEeCCCcEeEEE
Confidence            4688999999999999999999997 4444444332221 1122233455799999999999999999999999999999


Q ss_pred             EEEEEecCC
Q psy15734        267 KVYVNLVDG  275 (314)
Q Consensus       267 ~l~V~~~~~  275 (314)
                      .|.|...|.
T Consensus        93 ~l~V~~~P~  101 (103)
T 1wwb_X           93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEECCCCC
Confidence            998877654

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=99.64  E-value=2.4e-15  Score=115.21  Aligned_cols=119  Identities=14%  Similarity=0.173  Sum_probs=89.1

Q ss_pred             CCeEEcCCCcceeec-CccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFV-SQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~-g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ||.|..++.. .+.+ |+++.|.|.+.+.|.  +.+.|++++ ..+.......         ....|.|.+++.+|+|.|
T Consensus         3 ~P~i~~~~~~-~v~~~G~~v~l~C~~~~~~~~~~~v~W~~~~-~~~~~~~~~~---------~~~~L~i~~~~~~d~G~Y   71 (190)
T 2wv3_A            3 EPRIVTSEEV-IIRDSLLPVTLQCNLTSSSHTLMYSYWTKNG-VELTATRKNA---------SNMEYRINKPRAEDSGEY   71 (190)
T ss_dssp             CCEEEECCCE-ECCCSSSCEEEEEEEEECSSCEEEEEEEETT-EECTTCCBCC---------SEEEEEESSCCGGGCEEE
T ss_pred             CCcccccceE-EEccCCceEEEEEEeccCCCCceEEEEEECC-EECcccceEe---------ccEEEEEecCCcccCEEE
Confidence            5677665444 4445 999999999999987  899999974 3332222111         124999999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEecCCCeeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        252 RCVAVNALGETDGFIKVYVNLVDGDIFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      +|.|.|. |.....+.|.|..+|  .+..    ..+..++...+.|.+.+.|.|.+.|..
T Consensus        72 ~C~~~n~-~~~~~~~~l~V~~~p--~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i~W~~  128 (190)
T 2wv3_A           72 HCVYHFV-SAPKANATIEVKAAP--DITGHKRSENKNEGQDAMMYCKSVGYPHPEWMWRK  128 (190)
T ss_dssp             EEEEEET-TEEEEEEEEEEECCC--EEEEECSEEEEETTSCEEEEEEEECSSCCEEEEEE
T ss_pred             EEEEEeC-CcccccEEEEEecCC--cccccCCcceeeCCCcEEEEEEeCccCCCceEEEE
Confidence            9999999 888888888888764  2322    133455556799999999999999976

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.63  E-value=8.3e-16  Score=105.97  Aligned_cols=95  Identities=14%  Similarity=0.264  Sum_probs=77.0

Q ss_pred             eeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        172 ELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       172 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ...+|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++ ..+....++.+....    ...+|.|.++..+|+|.|
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g-~~l~~~~~~~~~~~~----~~~~L~I~~v~~~D~G~Y   85 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVLSTSARHQVTTTK----YKSTFEISSVQASDEGNY   85 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSS-SCCTTCSSEEEEECS----SEEEEEECCCCSSCCSEE
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECC-EECCCCCCEEEEECC----CEEEEEECcCCchhCEEE
Confidence            334778888888999999999999999999999999999974 434344444443211    134999999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEE
Q psy15734        252 RCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +|.|.|..|.....+.|.|.
T Consensus        86 ~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           86 SVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             EECCBCSSCBCCEEEEEEEC
T ss_pred             EEEEEeCCCeEEEEEEEEEE
Confidence            99999999999999888874

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=99.63  E-value=1e-15  Score=119.20  Aligned_cols=139  Identities=22%  Similarity=0.247  Sum_probs=93.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      ||.|...+....+.+|+++.|.|.+.+.|.+.+.|++++........  ........++......|.|.++..+|+|.|+
T Consensus         9 pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~i~~~~~~d~G~Y~   88 (212)
T 2v9r_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (212)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCTTCSEEECTTSCEEESSCCCCSSCCCSCEEEE
T ss_pred             CcceecCCCceEEeCCCcEEEEEEcCCCCCCEEEEEECCEEeeccccccccceEEecCCcEEEEEEEecCCCcccCeEEE
Confidence            67788888888999999999999999999999999997543322211  1111222333222234566778999999999


Q ss_pred             EEEeeCCCCc-eeEEEEEEEec----------------------------------------------------CCCeeE
Q psy15734        253 CVAVNALGET-DGFIKVYVNLV----------------------------------------------------DGDIFQ  279 (314)
Q Consensus       253 C~a~n~~g~~-~~~~~l~V~~~----------------------------------------------------~~~~~~  279 (314)
                      |.|.|..|.. ...+.|.|...                                                    .+..|.
T Consensus        89 C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~~~~~l~~~~~~~~~~~~~L~  168 (212)
T 2v9r_A           89 CVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTISWKKDGSPLDDKDERITIRGGKLM  168 (212)
T ss_dssp             EEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEEEEEETTEEECTTSTTEEEETTEEE
T ss_pred             EEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEEEEEECCccCCCCcceEEccCCeEE
Confidence            9999988765 34455544221                                                    112345


Q ss_pred             EEEccccccEeEEEEEeeccCCCccceEEEEEEe
Q psy15734        280 IRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHC  313 (314)
Q Consensus       280 ~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v~~  313 (314)
                      +..+...|.|.|+|.|.|..+...+..+.|.|+.
T Consensus       169 i~~~~~~d~G~Y~C~a~N~~g~~~s~~~~l~V~~  202 (212)
T 2v9r_A          169 ITYTRKSDAGKYVCVGTNMVGERESEVAELTVLE  202 (212)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEECCCEEEEEEC
T ss_pred             EeeCCHhhCeeEEEEEecccCceecceEEEEEEe
Confidence            5566677778888888887765555567777764

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=99.63  E-value=3e-15  Score=116.02  Aligned_cols=121  Identities=18%  Similarity=0.302  Sum_probs=86.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .|.+...+....+.+|+++.|.|.+.+.|.+. +.|++++ ..+....         .     .|.|.+++.+|+|.|+|
T Consensus         7 ~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~~v~W~k~g-~~l~~~~---------~-----~L~i~~v~~~D~G~Y~C   71 (204)
T 3sgj_C            7 KAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQSTQWFHNE-SLISSQA---------S-----SYFIDAATVDDSGEYRC   71 (204)
T ss_dssp             BCEEEEESCCSEEETTCCEEEEEECCSSSSCCCEEEEETT-EEESCCS---------S-----EEEESSCCGGGCEEEEE
T ss_pred             CCeEEEcCCCeEEECCCCEEEEEcCCCCCCCcEEEEEECC-EEcccCc---------c-----EEEEecccccCCEEEEE
Confidence            35666666767899999999999999999876 9999974 3332221         2     99999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEec---------------------------------------------CCCeeEEEEcccccc
Q psy15734        254 VAVNALGETDGFIKVYVNLV---------------------------------------------DGDIFQIRKMSRLHM  288 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~---------------------------------------------~~~~~~~~~~~~~~~  288 (314)
                      .|.|.....  .+.|.|...                                             ....|.+..+...|.
T Consensus        72 ~a~n~~~s~--~~~l~V~~~p~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~L~i~~v~~~D~  149 (204)
T 3sgj_C           72 QTQLSTLSD--PVQLEVHIGWLLLQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKGRKYFHHNSDFYIPKATLKDS  149 (204)
T ss_dssp             EETTSBCCC--CEEEEEECSSEEEECSCSEEETTCCEEEEEEEGGGCCCEEEEEEETTEEEEEEEECCCEEESSCCGGGC
T ss_pred             EeCCCcccc--cEEEEEecCceEecCCceeEeCCCcEEEEEEecCCCCCceEEEEECCcEeecccCCceEEECcCCcccC
Confidence            999854444  344444210                                             123345556677788


Q ss_pred             EeEEEEEeeccCCCccceEEEEEE
Q psy15734        289 GAYLCIASNGVVPSVSHRIMVTVH  312 (314)
Q Consensus       289 g~~~C~a~~~~~~~~~w~v~l~v~  312 (314)
                      |.|+|.|.|......+-.+.|.|+
T Consensus       150 G~Y~C~a~n~~~~~~s~~~~l~V~  173 (204)
T 3sgj_C          150 GSYFCRGLVGSKNVSSETVQITIT  173 (204)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEEE
T ss_pred             EEEEEEEEeCCCceecCcEEEEEe
Confidence            888888888555556667777665

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.63  E-value=8.6e-16  Score=106.58  Aligned_cols=99  Identities=9%  Similarity=-0.022  Sum_probs=73.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeec---CCceeEEecCCCeeeecC--CceeeeEeeC--CeeeEEEEEEeecCCCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAF---PASLNYWTNEKGDMIITG--DDYEDSRLIN--GYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~---p~p~~~W~~~~~~~~~~~--~~~~~~~~~~--~~~~~s~L~i~~~~~~d  247 (314)
                      ++.|...+....+.+|++++|.|.+.|.   |.|.|.|+|++...+...  .++.+.....  .......|.|.++..+|
T Consensus        12 ~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   91 (118)
T 2edn_A           12 TGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGSKSGARFSFKESHNSASNVYTVELHIGKVVLGD   91 (118)
T ss_dssp             SSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCCSTTSSCEEEEEECSSSCEEEEEEEESSCCTTT
T ss_pred             cceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCCCCccEEEeccccccccccceEEEEEeeCChhh
Confidence            3456667788899999999999999985   789999999632222211  2222221111  11234699999999999


Q ss_pred             CeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        248 FGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      +|.|+|+|.|..|..++.+.|.|..+
T Consensus        92 ~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           92 RGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             CSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             CEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            99999999999999999999998764

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.63  E-value=2.6e-15  Score=103.93  Aligned_cols=95  Identities=14%  Similarity=0.139  Sum_probs=70.9

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCC---ceeEEecCCCeeeec---CCceeeeEee--CCeeeEEEEEEeecCCCC
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPA---SLNYWTNEKGDMIIT---GDDYEDSRLI--NGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~---p~~~W~~~~~~~~~~---~~~~~~~~~~--~~~~~~s~L~i~~~~~~d  247 (314)
                      |.|...+....+.+|++++|.|.+.|.|.   |.+.|++++. ....   ..++.+....  ........|.|.+++.+|
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D   83 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKW-VDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAF   83 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTT-EEGGGGCBTTEEEEEEEETTTTEEEEEEEECSCCGGG
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCc-ccccccCCceEEEeeEEecccccceEEEEEecCCCcc
Confidence            55666777888999999999999999998   9999999642 2211   1222222111  111224589999999999


Q ss_pred             CeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        248 FGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +|.|+|.|.|..|...+++.|.|.
T Consensus        84 ~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           84 TGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             CEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999999999885

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=99.63  E-value=9.8e-16  Score=121.53  Aligned_cols=180  Identities=14%  Similarity=0.181  Sum_probs=100.0

Q ss_pred             CCceecCCcceE-EEcCCcEEEEEEecCCC----ceEEEEEEcCceeEEEeeee--eeecCcCEEEEeCCceeEEEEEee
Q psy15734         21 MPRFAEPVANVT-ATVGKEALMACVVENLR----EYKVAWVKMITQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        21 ~p~~~~~~~~~~-v~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      ++.++.++.... +..|+.+.|.|.+.+..    ...|.|++++ ..+......  ....++.+...      ..|.|..
T Consensus        23 P~v~i~~ps~~~~l~~g~~~~L~C~v~g~~p~P~~i~v~W~k~g-~~l~~~~~~~~~~~~~g~~~~~------s~L~i~~   95 (240)
T 4acp_A           23 PSVFLFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDG-VEVHNAKTKPREEQYNSTYRVV------SVLTVLH   95 (240)
T ss_dssp             CEEEEECCCHHHHHSSSSCCEEEEEEESCCC--CCCEEEEEETT-EEECCCEECCCEEC---CEEEE------EEEECCH
T ss_pred             CEEEEECcChHHhcccCCCcEEEEEEeccccCCCccEEEEEECC-cccCCceeccceECCCCeEEEE------EEEEEec
Confidence            334455666555 56799999999998853    3589999954 433211100  01123333332      2688888


Q ss_pred             ecCCCCeEEEEEEecCCC-cceeEEEE----EEeCCceeeecCcceeEEecCceEEEEEEeccc-CCC-ceEEEcCCCce
Q psy15734         94 VQETDRGWYMCQINTVPM-TSQKGYLQ----VVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP-YVAWRREDGKA  166 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~-~~~~~~l~----v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p-~~~W~~~~~~~  166 (314)
                      ....|.|.|+|.+.+... ......+.    +..+|.+.......  ....|+.+.|.|.+.++ |.+ .+.|++ ++..
T Consensus        96 ~~~~d~~~YtC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~--~~~~g~~~~L~C~~~gf~P~~i~v~W~k-~g~~  172 (240)
T 4acp_A           96 QDWLNGKEYKCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSR--DELTKNQVSLTCLVKGFYPSDIAVEWES-NGQP  172 (240)
T ss_dssp             HHHHHTCCEEEEEECC----CEEEEECCCCSCCBCCEEEEECCCG--GGGGSSEEEEEEEEEEEBSSCCEEEEEE-TTEE
T ss_pred             hhccCCCEEEEEEEcCCCCccccccccccCCCCCCCEEEEECCCh--HHhcCCceEEEEEEeEEeCCCcEEEEEE-CCEE
Confidence            888889999999976543 22222221    22345444432111  11236666677766663 433 566666 3322


Q ss_pred             eecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCC
Q psy15734        167 INYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILS  245 (314)
Q Consensus       167 ~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~  245 (314)
                      +                                                  ........... ++.|...+.|.|.....
T Consensus       173 ~--------------------------------------------------~~~~~~~~~~~~dgt~~~~s~L~v~~~~~  202 (240)
T 4acp_A          173 E--------------------------------------------------NNYKATPPVLDSDGSFFLYSKLTVDKSRW  202 (240)
T ss_dssp             C--------------------------------------------------SSEEECCCEECTTSCEEEEEEEEEEHHHH
T ss_pred             C--------------------------------------------------CCcCccCceECCCCCEEEEEEEEEChHHh
Confidence            1                                                  10000001111 22255667899988887


Q ss_pred             CCCeEEEEEEeeCCC
Q psy15734        246 HQFGSYRCVAVNALG  260 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g  260 (314)
                      .|.|.|+|.|.+..-
T Consensus       203 ~~~~~ytC~V~h~~l  217 (240)
T 4acp_A          203 QQGNVFSCSVMHEAL  217 (240)
T ss_dssp             HTTCCEEEEEECTTS
T ss_pred             CCCCEEEEEEEECCC
Confidence            889999999999763

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=99.63  E-value=1.7e-15  Score=103.02  Aligned_cols=94  Identities=20%  Similarity=0.240  Sum_probs=72.4

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+.      ...+.++.+...+. ..+|.|.+++.+|+
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g-~~i~------~~~~~~~~~~~~~~-~~~L~I~~~~~~D~   75 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEVTWSCGG-RKIH------SQEQGRFHIENTDD-LTTLIIMDVQKQDG   75 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEEEEEETT-EECC------TTGGGTEEEEECSS-EEEEEESSCCGGGC
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEEEEEECc-eEee------eeccceeeeecccc-eEEEEEcCCCccCC
Confidence            4688888899999999999999999999999999999954 3321      12234666655443 34799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |.|+|.+.|. |..+..+.|.|.
T Consensus        76 G~Y~C~a~N~~G~~~~~~~l~V~   98 (100)
T 3knb_A           76 GLYTLSLGNEFGSDSATVNIHIR   98 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEEE
Confidence            9999999876 444556666664

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=99.62  E-value=8.9e-15  Score=117.40  Aligned_cols=167  Identities=15%  Similarity=0.172  Sum_probs=81.6

Q ss_pred             ecCCCCeEEEEEEecCCCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccC-----CCceEEEcCC-Ccee
Q psy15734         94 VQETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYP-----EPYVAWRRED-GKAI  167 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p-----~p~~~W~~~~-~~~~  167 (314)
                      ++.+|+|.|+|.+.  +.......+.+..++.+...  +....+.+|+.++|.|.+.+.|     .+.+.|++.+ +..+
T Consensus        11 v~~~dsg~Y~C~a~--g~~~~~~~~~~~~~~~~~~~--p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~g~~~   86 (254)
T 2c1o_A           11 VRPGTSVKLSCKAS--GYSFTNYWMNWLRELVMTQS--PLTLSVTIGQPASISCKSSQSLLYSNGKTYLNWLLQRPGQSP   86 (254)
T ss_dssp             -----------------------------CCCEEEE--CSEEEECTTSCEEEEEEESSCCBCSSSCBCEEEEEECTTSCC
T ss_pred             ecCCccEEEEEcCc--hhhhhhhhhheeeceeEEeC--CceEEecCCCcEEEEeeccCcccccCCCCceEEEEeCCCCCc
Confidence            78899999999996  33333333444445555443  3577899999999999999887     4899999732 1110


Q ss_pred             ecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        168 NYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       168 ~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                                                           ..+.. ...........++.... ..   ....|.|.+++.+|
T Consensus        87 -------------------------------------~~~~~-~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v~~~D  124 (254)
T 2c1o_A           87 -------------------------------------KRLIY-LVSKLDSGDPDRFTGSG-SG---TDFTLKISRVEAED  124 (254)
T ss_dssp             -------------------------------------EEEEE-TTTEECTTCCTTEEEEE-ET---TEEEEEESSCCGGG
T ss_pred             -------------------------------------eEEEE-eccccCCCccceEEEec-CC---CEEEEEECcCCccc
Confidence                                                 00000 00000000012332221 11   13489999999999


Q ss_pred             CeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEEc----cccccEeEEEEEeeccCC--Cccce
Q psy15734        248 FGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      +|.|+|.|.|..+.. .....|.|.... .+.+.+...    ..+....+.|.+.+.+++  .++|.
T Consensus       125 ~G~Y~C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  191 (254)
T 2c1o_A          125 LGIYYCVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  191 (254)
T ss_dssp             CSEEEEEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CEEEEEEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCCCcEEEEE
Confidence            999999999986543 223456665432 233433221    123345799999996555  47884

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=8e-16  Score=108.36  Aligned_cols=95  Identities=22%  Similarity=0.291  Sum_probs=78.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.|.|.|.+.|++++..+.....++.  ...++     +|.|.++..+|+|.|+|.
T Consensus         8 pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~~~~~~~~~~~--~~~~~-----~L~i~~v~~~D~G~Y~C~   80 (118)
T 2eo9_A            8 PPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGVLVSTQDSRIK--QLENG-----VLQIRYAKLGDTGRYTCI   80 (118)
T ss_dssp             SCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSSBCCTTSTTEE--EEETT-----EEEEESCCGGGCCCEEEE
T ss_pred             CCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCEECcCCCCeEE--EccCC-----EEEEccCCcCCCEEEEEE
Confidence            67777777888899999999999999999999999997544333233332  23455     899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.|..|.....+.|.|...+.+
T Consensus        81 a~n~~g~~~~~~~l~V~~~~~p  102 (118)
T 2eo9_A           81 ASTPSGEATWSAYIEVQEFGVP  102 (118)
T ss_dssp             EECSSCEEEEECCEEEECCSCC
T ss_pred             EEcCCCcEEEEEEEEEEeCCCC
Confidence            9999999988999999877544

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.62  E-value=1.6e-15  Score=103.26  Aligned_cols=92  Identities=16%  Similarity=0.091  Sum_probs=74.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|..++.+..+.+|+++.|.|.+  .|.|.+.|+++ +..+....++.+.....    .+.|.|.++..+|+|.|+|.
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~-g~~l~~~~r~~i~~~~~----~~~L~I~~v~~~D~G~Y~C~   79 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKN-GLPVQESDRLKVVQKGR----IHKLVIANALTEDEGDYVFA   79 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEET-TEECCCCSSEEEEECSS----EEEEEESSCCGGGCSEEEEE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEEC-CEECCCCCcEEEEEeCC----EEEEEECCCChhhCEEEEEE
Confidence            5677777888899999999999999  89999999997 55555556665543221    24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |.|.  ..+.++.|.|..+|.
T Consensus        80 a~N~--~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           80 PDAY--NVTLPAKVHVISGPS   98 (100)
T ss_dssp             ESSS--CCCEEEEEEEECCSC
T ss_pred             EcCC--CeeEEEEEEEeCCCC
Confidence            9998  567788888887753

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.62  E-value=3.4e-15  Score=110.34  Aligned_cols=97  Identities=19%  Similarity=0.336  Sum_probs=78.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+..|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....++   .+.|.|.++..+|+|.|+|.
T Consensus        41 ~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~-g~~~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~  116 (154)
T 1fhg_A           41 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCK  116 (154)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEEC-CEECCCCCcEEEEECCCC---eEEEEECCCChhcCEEEEEE
Confidence            67777777778899999999999999999999999997 444444455544432222   35999999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |.|..|.....+.|.|...+.
T Consensus       117 a~N~~G~~~~~~~l~V~~~p~  137 (154)
T 1fhg_A          117 AVNSLGEATCTAELLVETMGK  137 (154)
T ss_dssp             EEETTEEEEEEEEEEEECC--
T ss_pred             EEECCCeEEEEEEEEEeCcCc
Confidence            999999999999999987753

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.62  E-value=2.3e-15  Score=105.47  Aligned_cols=88  Identities=16%  Similarity=0.102  Sum_probs=68.2

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEee---CCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLI---NGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~---~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+..+.|.|.+.|.|.|.+.|+++ +..+....+.......   +.......|.|.++...|+|.|+|.|.|..|.+.+
T Consensus        13 ~~~~~~~l~c~v~G~P~P~I~W~kn-G~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N~~G~~~~   91 (126)
T 1he7_A           13 VEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAANPFGQASA   91 (126)
T ss_dssp             CCCCEEEEEEEECCSSCCEEEEEET-TEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEETTEEEEE
T ss_pred             ccCccEEEEEEEeeeCCCeEEEEEC-CEECCCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEECCCeEEE
Confidence            3678999999999999999999997 5555554443333222   11112348999999999999999999999999999


Q ss_pred             EEEEEEEecCCC
Q psy15734        265 FIKVYVNLVDGD  276 (314)
Q Consensus       265 ~~~l~V~~~~~~  276 (314)
                      ++.|.|...|..
T Consensus        92 t~~l~v~~~P~~  103 (126)
T 1he7_A           92 SIMAAFMDNPFE  103 (126)
T ss_dssp             EEEECCCSCTTS
T ss_pred             EEEEEEEcCCCC
Confidence            999988877643

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.62  E-value=8.6e-16  Score=104.58  Aligned_cols=88  Identities=23%  Similarity=0.311  Sum_probs=70.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++..+. .... .   ...+   ...|.|.++..+|+|.|+|.
T Consensus        11 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~~~-~~~~-~---~~~~---~~~L~i~~v~~~D~G~Y~C~   82 (99)
T 2yr3_A           11 APSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQPIQ-YARS-T---CEAG---VAELHIQDALPEDHGTYTCL   82 (99)
T ss_dssp             EEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSBCS-SCCC-E---EETT---EEEEEECSCCTTCCBCEEEE
T ss_pred             CCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEECc-ccce-E---eeCC---eEEEEECCCChhhCEEEEEE
Confidence            6777777888889999999999999999999999999754332 2211 1   1111   24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      |.|..|.....+.|.|
T Consensus        83 a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           83 AENALGQVSCSAWVTV   98 (99)
T ss_dssp             EECSSCEEEEECCEEE
T ss_pred             EEECCCeEEEEEEEEE
Confidence            9999999888887776

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.62  E-value=7.3e-15  Score=99.52  Aligned_cols=91  Identities=21%  Similarity=0.335  Sum_probs=73.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec-CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      .+..++....+.+|+++.|.|.+.|. |.|.+.|+++ +..+....++.+... ++   .+.|.|.++..+|+|.|+|.|
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~-~~~~~~~~~~~~~~~-~~---~~~L~i~~v~~~D~G~Y~C~a   77 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFG-VRQLENSEKYEITYE-DG---VAILYVKDITKLDDGTYRCKV   77 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEET-TEECCSSSSEEEEEE-TT---EEEEEECSCCGGGCEEEEEEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEEC-CEECcCCCCEEEEEc-CC---eEEEEEecCChhhCeEEEEEE
Confidence            45567778899999999999999997 9999999997 444444555554332 22   358999999999999999999


Q ss_pred             eeCCCCceeEEEEEEEe
Q psy15734        256 VNALGETDGFIKVYVNL  272 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~  272 (314)
                      .|..|.....+.|.|..
T Consensus        78 ~n~~g~~~~~~~l~V~~   94 (97)
T 2bk8_A           78 VNDYGEDSSYAELFVKG   94 (97)
T ss_dssp             ECSSCEEEEEEEEEETT
T ss_pred             ECCCCeEeEEEEEEEEe
Confidence            99999998888887754

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=99.61  E-value=4.5e-15  Score=113.16  Aligned_cols=79  Identities=16%  Similarity=0.143  Sum_probs=60.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.. .+.+|++++|.|.+.+ |.+.+.|++++..          ....++     .|.|.+++.+|+|.|+|.
T Consensus         8 ~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~~~W~k~g~~----------~~~~~~-----~L~i~~v~~~D~G~Y~C~   70 (184)
T 2gi7_A            8 KPSLQALPSS-LVPLEKPVTLRCQGPP-GVDLYRLEKLSSS----------RYQDQA-----VLFIPAMKRSLAGRYRCS   70 (184)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECST-TCSEEEEEETTTC----------CEESSS-----EEEESSCCGGGCEEEEEE
T ss_pred             CCeEEeCCCc-cccCCCcEEEEEeCCC-CCCEEEEEECCcc----------ccCccc-----EEEECcCChhhCceEEEE
Confidence            5667666654 7899999999999988 7889999997544          112233     999999999999999999


Q ss_pred             EeeCCCC--ceeEEEEEE
Q psy15734        255 AVNALGE--TDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~--~~~~~~l~V  270 (314)
                      |.|..|.  .+..+.|.|
T Consensus        71 a~n~~g~~~~s~~~~l~V   88 (184)
T 2gi7_A           71 YQNGSLWSLPSDQLELVA   88 (184)
T ss_dssp             EEETTEEBCCCCCEEEEE
T ss_pred             EEcCCCccCCCCCEEEEe
Confidence            9998753  234455555

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=99.61  E-value=6e-15  Score=112.69  Aligned_cols=127  Identities=20%  Similarity=0.148  Sum_probs=89.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++..... ....+.....++     .|.|.++..+|+|.|+|.
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v~W~~~~~~~~~-~~~~~~~~~~~~-----~L~i~~~~~~d~G~Y~C~   75 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAVSWLYHNEEVTT-ISDNRFAMLANN-----NLQILNINKSDEGIYRCE   75 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEEEEEC-----CB-CCCTTEEECTTS-----CEEETTCCGGGCEEEEEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEEEEEECCcccee-ccCCeEEEecCC-----CEEEeeCCHhHCcEEEEE
Confidence            46777788888999999999999999999999999997544332 222222223344     899999999999999999


Q ss_pred             EeeCCCCce--eEEEEEEEecCCCee----EEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        255 AVNALGETD--GFIKVYVNLVDGDIF----QIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       255 a~n~~g~~~--~~~~l~V~~~~~~~~----~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      +.|..+...  ..+.+.|..++....    ....+..++...+.|.+.+.|.|.+.|..
T Consensus        76 ~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v~W~~  134 (189)
T 2v5t_A           76 GRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAISWFR  134 (189)
T ss_dssp             EEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEEEEEE
T ss_pred             EEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeEEEEE
Confidence            999876543  455555555432111    11234455666799999999999999953

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=99.61  E-value=5e-15  Score=126.36  Aligned_cols=128  Identities=17%  Similarity=0.186  Sum_probs=94.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-Ceeeec-----CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-GDMIIT-----GDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-~~~~~~-----~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      +|.|.. +....+.+|+++.|.|.+.|.|.|.+.|++++ +..+..     ..++.+..  +.  ..+.|.|.++..+|+
T Consensus         1 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~p~p~v~W~~~~~g~~~~~~~~~~~~~~~~~~--~~--~~~~L~i~~v~~~D~   75 (389)
T 2jll_A            1 QPHIIQ-LKNETTYENGQVTLVCDAEGEPIPEITWKRAVDGFTFTEGDKSLDGRIEVKG--QH--GSSSLHIKDVKLSDS   75 (389)
T ss_dssp             CCEEEE-CCCEEEETTSEEEEEEEEECSSCCEEEEEETTTTEEECC--CCSSSSEEEEE--CS--SEEEEEEESCCGGGC
T ss_pred             CCeEEe-cCceEEeCCCeEEEEEEeecccCCeEEEEeCCCCceeccCcCCCCCeEEEec--cC--CcceEEEcccChhhC
Confidence            466666 44567788999999999999999999999973 333322     22332221  11  135999999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEecCCCe--eEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNLVDGDI--FQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~--~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|+|.|.|..|..+..+.|.|..+|.-.  .....+..++...+.|.+.+.|.+.+.|..
T Consensus        76 G~Y~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i~W~~  136 (389)
T 2jll_A           76 GRYDCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASIHWRR  136 (389)
T ss_dssp             EEEEEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEEEEEE
T ss_pred             EEEEEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeEEEEE
Confidence            99999999999999999999998764211  111233455566799999999999999953

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=99.61  E-value=3.5e-14  Score=117.56  Aligned_cols=179  Identities=16%  Similarity=0.155  Sum_probs=116.9

Q ss_pred             eeeeeeeccCCCCCceecCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeE
Q psy15734          9 CTYFKTKCEKPDMPRFAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW   87 (314)
Q Consensus         9 ~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   87 (314)
                      .......+.+...|.+...+....+..|+.+.|.|.+. +.|.+.+.|++++.. +..........++.+...      .
T Consensus       105 ~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i~W~~~~~~-~~~~~~~~~~~~~~~~~~------s  177 (313)
T 4fqp_A          105 SRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQITWHSDLGG-MPNTSQVPGFLSGTVTVT------S  177 (313)
T ss_dssp             EEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEEEEEETTCC-EEEEEEEECSSTTCEEEE------E
T ss_pred             ceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEEEeecCCcc-ccccceeeeecccccccc------e
Confidence            33344445556677777777777788899999999875 578899999995543 332222222233333332      2


Q ss_pred             EEEEeeecCCCCeEEEEEEecCC---CcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCC-ceEEEcCC
Q psy15734         88 FLHLRDVQETDRGWYMCQINTVP---MTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEP-YVAWRRED  163 (314)
Q Consensus        88 ~L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p-~~~W~~~~  163 (314)
                      .|.|.+.+..|.|.|+|.+.+..   .....+.|.|..+|.+.... .....+.+|+.+.|.|.+.|+|.| .+.|++ +
T Consensus       178 ~l~i~~~~~~d~g~Y~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~-~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~~-~  255 (313)
T 4fqp_A          178 LWILVPSSQVDGKNVTCKVEHESFEKPQLLTVNLTVYYPPEVSISG-YDNNWYLGQNEATLTCDARSNPEPTGYNWST-T  255 (313)
T ss_dssp             EEEECCCGGGTTCEEEEEEECTTSSSCEEEEEECCBCEEEEEEEEC-CCSCEETTCCCEEEEEEEEEESCCCEEEEEE-T
T ss_pred             eeeecccccccCeeEEEEEEccCcCccceeeeecccccCCcccccc-ccceeecCCCeEEEEEEecCCCCCcEEEEEE-C
Confidence            69999999999999999997742   22344566677778765543 334456788999999999999999 699999 6


Q ss_pred             CceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEe
Q psy15734        164 GKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTE  200 (314)
Q Consensus       164 ~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~  200 (314)
                      +.++.......-..+.+.    .+...+.-...|.|.
T Consensus       256 ~~~l~~~~~~~~~~L~i~----~v~~~d~G~Y~C~a~  288 (313)
T 4fqp_A          256 MGPLPPFAVAQGAQLLIR----PVDKPINTTLICNVT  288 (313)
T ss_dssp             TBSCCTTEEEETTEEEEC----CCSSCCEEEEEEEEE
T ss_pred             CEECCCceEEeCCEEEEC----cCChhhCEEEEEEEE
Confidence            665543222111122221    234456667778775

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=99.61  E-value=1.9e-15  Score=124.90  Aligned_cols=121  Identities=14%  Similarity=-0.004  Sum_probs=80.5

Q ss_pred             CCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        182 NQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +.......|+.+.|.|.+ .|.|.|.+.|++++..+.....    ......+...+.|.|..+..+|+|.|+|.|.|..+
T Consensus       121 ~~~~~~~~~~~~~l~C~~~~g~P~~~i~W~~~~~~~~~~~~----~~~~~~~~~~s~l~i~~~~~~d~g~Y~C~a~n~~~  196 (308)
T 4fom_A          121 PDSLIDGGNETVAAICIAATGKPVAHIDWEGDLGEMESTTT----SFPNETATIISQYKLFPTRFARGRRITCVVKHPAL  196 (308)
T ss_dssp             SSCCCTTCSCEEEEEEEEEEEBSCCEEEECCCSSBCCEEEE----ECTTSCEEEEEEEEECCCGGGTTCEEEEEEECTTC
T ss_pred             cceeEEcCCceEEEEEEecCCcCCceEEEEECCcccccccc----eeeeecccccccceEEeeeecCCccEEEEEEccCC
Confidence            444455678899999975 7899999999998654332111    11122234456899999999999999999999987


Q ss_pred             CceeE--EEEEEEecCCCeeEEE---EccccccEeEEEEEeeccCC-Cccce
Q psy15734        261 ETDGF--IKVYVNLVDGDIFQIR---KMSRLHMGAYLCIASNGVVP-SVSHR  306 (314)
Q Consensus       261 ~~~~~--~~l~V~~~~~~~~~~~---~~~~~~~g~~~C~a~~~~~~-~~~w~  306 (314)
                      .....  +.|.|..+|...+...   .+..++...+.|.+.+.|+| .+.|.
T Consensus       197 ~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~~v~W~  248 (308)
T 4fom_A          197 EKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPPFKSVWS  248 (308)
T ss_dssp             SSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCEEEEECC
T ss_pred             CCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCCcEEEEE
Confidence            76544  4444544432111111   12223344699999999988 68895

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.60  E-value=1.2e-15  Score=105.63  Aligned_cols=94  Identities=17%  Similarity=0.269  Sum_probs=65.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+...+....+.+|+++.|.|.+.|.|.|.+.|++++... .....+.. ...+.     .|.|.++..+|+|.|+|.
T Consensus        10 ~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~~-~~~~~~~~-~~~~~-----~L~i~~v~~~D~G~Y~C~   82 (108)
T 3kvq_A           10 APTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNETL-VEDSGIVL-KDGNR-----NLTIRRVRKEDEGLYTCQ   82 (108)
T ss_dssp             -CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSBC-CCBTTEEE-ETTTT-----EEEECSCCGGGCEEEEEE
T ss_pred             CCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeEc-ccCCCeEE-eCCCc-----EEEEeecCcccCEEEEEE
Confidence            566666777788999999999999999999999999975443 33333222 12233     899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |.|..|.....+.|.|...+.
T Consensus        83 a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           83 ACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             EC----CEEEEEEEEEEC---
T ss_pred             EEeCCCceEEEEEEEEeCCCc
Confidence            999999999999999987654

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.60  E-value=2.1e-15  Score=101.81  Aligned_cols=86  Identities=15%  Similarity=0.287  Sum_probs=70.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.+...+....+.+|+++.|.|.+.|.| |.+.|+++ +..+....++.+.   ++     .|.|.+++.+|+|.|+|.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~-g~~~~~~~~~~~~---~~-----~L~i~~~~~~D~G~Y~C~   78 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRD-GVQLVESNRTRIT---GE-----EVEVRDSIPADSGLYACV   78 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBT-TBCCCCCSSEEEC---SS-----EEEESSCCGGGSEEEEEE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEEC-CEecCCCCCEEEe---CC-----EEEECCCChHHCEEEEEE
Confidence            56666677788899999999999999998 89999996 4444344443322   33     999999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      |.|..|.....+.|.|
T Consensus        79 a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           79 TSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             EEETTEEEEEEEEEEE
T ss_pred             eccCCCcEEEEEEEEE
Confidence            9999999888888876

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.60  E-value=7.8e-15  Score=99.77  Aligned_cols=94  Identities=17%  Similarity=0.285  Sum_probs=75.3

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+  .+.+.+.|+|++ ..        +..+.++.+..++.. ..|.|.+++.+|
T Consensus         5 ~~p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v~W~k~g-~~--------l~~~~r~~i~~~~~~-~~L~I~~v~~~D   72 (100)
T 2yuz_A            5 SSGLKILTPLTDQTVNLGKEICLKCEI--SENIPGKWTKNG-LP--------VQESDRLKVVQKGRI-HKLVIANALTED   72 (100)
T ss_dssp             SCCCCCSBCCCCEEEETTSCCCEEEEC--SSCCCEEEEETT-EE--------CCCCSSEEEEECSSE-EEEEESSCCGGG
T ss_pred             CCCCEEeccCCceEEcCCCCEEEEEEe--CCCCeEEEEECC-EE--------CCCCCcEEEEEeCCE-EEEEECCCChhh
Confidence            457889999999999999999999999  677899999954 33        234556666655432 379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.|. ..+..+.|.|..+|.
T Consensus        73 ~G~Y~C~a~N~-~~~~~a~L~V~~~P~   98 (100)
T 2yuz_A           73 EGDYVFAPDAY-NVTLPAKVHVISGPS   98 (100)
T ss_dssp             CSEEEEEESSS-CCCEEEEEEEECCSC
T ss_pred             CEEEEEEEcCC-CeeEEEEEEEeCCCC
Confidence            99999999876 556778899988764

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=99.60  E-value=2.4e-15  Score=113.82  Aligned_cols=124  Identities=17%  Similarity=0.266  Sum_probs=87.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.+...+....+.+|+++.|.|.+.+.|.+ .+.|++++.. +..         .+.     .|.|.+++.+|+|.|+|
T Consensus         4 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~i~W~~~~~~-~~~---------~~~-----~L~i~~v~~~d~G~Y~C   68 (176)
T 1f2q_A            4 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHNGSL-SEE---------TNS-----SLNIVNAKFEDSGEYKC   68 (176)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEETTEE-CSC---------CSS-----EEEECSCCGGGCEEEEE
T ss_pred             CCEEEcCCCCcceecCCcEEEEEeCCCCCCcceEEEEECCeE-CCC---------Cce-----EEEEeccceecCEEEEE
Confidence            4566667777789999999999999999886 6899997433 221         122     99999999999999999


Q ss_pred             EEeeCCCCceeEEEEEE----------------------Ee---------------------cCCCeeEEEEccccccEe
Q psy15734        254 VAVNALGETDGFIKVYV----------------------NL---------------------VDGDIFQIRKMSRLHMGA  290 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V----------------------~~---------------------~~~~~~~~~~~~~~~~g~  290 (314)
                      .+.|..+.....+.+..                      ..                     ..+..|.+..+...|.|.
T Consensus        69 ~~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G~  148 (176)
T 1f2q_A           69 QHQQVNESEPVYLEVFSDWLLLQASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDGEALKYWYENHNISITNATVEDSGT  148 (176)
T ss_dssp             ECTTSSCCCCEEEEEECSSEEEEESCSEEETTSCEEEEEEEGGGCCEEEEEEEETTEECCSCCCSSEEEESSCCGGGCEE
T ss_pred             EcCCccccccEEEEEeCcceeecCCcceeeCCCCEEEEEEecCCCCceEEEEEECCEEEeeecCCCeEEECCCCcccCEE
Confidence            99997765554444320                      00                     013445666777788888


Q ss_pred             EEEEEeeccCCCccceEEEEEEe
Q psy15734        291 YLCIASNGVVPSVSHRIMVTVHC  313 (314)
Q Consensus       291 ~~C~a~~~~~~~~~w~v~l~v~~  313 (314)
                      |+|.|.|......+-.++|.|+.
T Consensus       149 Y~C~a~n~~~~~~s~~~~l~V~~  171 (176)
T 1f2q_A          149 YYCTGKVWQLDYESEPLNITVIK  171 (176)
T ss_dssp             EEEEEEETTEEEECCCEEEEEEC
T ss_pred             EEEEEEeCCcceEecCEEEEEec
Confidence            88888886555566677777764

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=99.59  E-value=8.7e-15  Score=119.80  Aligned_cols=170  Identities=22%  Similarity=0.219  Sum_probs=112.2

Q ss_pred             eCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceee--cCC---eeC----------------------
Q psy15734        122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAIN--YNG---ELV----------------------  174 (314)
Q Consensus       122 ~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~--~~~---~~~----------------------  174 (314)
                      .+|.+...  +....+.+|+.+.|.|.+.+.    +.|++.......  ...   .+.                      
T Consensus         3 ~~P~i~~~--~~~~~v~~G~~v~L~C~~~~~----v~W~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~n~~~~   76 (292)
T 4dkd_C            3 SIPVIEPS--VPELVVKPGATVTLRCVGNGS----VEWDGPPSPHWTLYSDGSSSILSTNNATFQNTGTYRCTEPGDPLG   76 (292)
T ss_dssp             -CCEEESC--CSSCEECTTCCEEEEEECSSC----CCBCCCCCSSCEECCBTTEEEEEESSCCGGGCSCEEECCCC----
T ss_pred             CCceecCC--CCeEEEcCCCcEEEEEcCCCc----eEEccCCCCceEEeccCceEEEEEcccccccCEEEEEEEccCCCC
Confidence            35655544  356689999999999998873    889863221111  100   000                      


Q ss_pred             -----------CCe-EEcCCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEE
Q psy15734        175 -----------PPM-LTIPNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       175 -----------~p~-~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                                 +|. +...+....+.+|+++.|.|.+.+ |.  +.+.|+++++..+.....+..  ..++     .|.|
T Consensus        77 ~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~~~~~v~W~~~~~~~~~~~~~~~~--~~~~-----~L~i  148 (292)
T 4dkd_C           77 GSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PVLEAGVSLVRVRGRPLMRHTNYSF--SPWH-----GFTI  148 (292)
T ss_dssp             CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GGGGSSEEEEEGGGCCCCSSCCEEC--CSSS-----CCEE
T ss_pred             cceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CCcceeEEEEecCCCccccCCcccc--cCCc-----eEEE
Confidence                       232 344556678899999999999998 54  789999975555544433322  2233     6999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeeccCC-Cccc
Q psy15734        241 RSILSHQFGSYRCVAVNALGET-DGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNGVVP-SVSH  305 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~~~~-~~~w  305 (314)
                      .++..+|+|.|+|.|.|..+.. +..+.|.|....  .+.+....    +..++...+.|.+.+.+++ .+.|
T Consensus       149 ~~~~~~d~G~Y~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~~~~~w  221 (292)
T 4dkd_C          149 HRAKFIQSQDYQCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVNFDVFL  221 (292)
T ss_dssp             TTCCGGGCSEEEEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSCCEEEC
T ss_pred             CCCCHHHCeEEEEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCceEEEE
Confidence            9999999999999999987755 447888887632  23333322    1344455799999987643 4566

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=99.59  E-value=3e-14  Score=112.22  Aligned_cols=126  Identities=16%  Similarity=0.181  Sum_probs=89.1

Q ss_pred             CCCcceeecCccEEEEEEEeecCCc---eeEEecCCCeeeec---C---------Cc--eeeeEeeCC-eeeEEEEEEee
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPAS---LNYWTNEKGDMIIT---G---------DD--YEDSRLING-YSCHMTLKIRS  242 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~---~---------~~--~~~~~~~~~-~~~~s~L~i~~  242 (314)
                      |...+.+.+|+++.|.|.+.+.+.+   .+.|++++......   .         ..  .+....... .....+|.|.+
T Consensus        10 P~~pV~v~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~~   89 (226)
T 4f80_A           10 PSGPILAMVGEDADLPCHLFPTMSAETMELKWVSSSLRQVVNVYADGKEVEDRQSAPYRGRTSILRDGITAGKAALRIHN   89 (226)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEETTTCCEEEEEETTEECGGGSCTTTTTTEEEECTTGGGTEEEEEESS
T ss_pred             CCCCEEEEcCCcEEEEEEEECCCCCCceEEEEEECCCCceEEEEeCCeEcccccCccccceEEEecccccCCeEEEEEee
Confidence            4556788999999999999887665   68999975432210   0         00  011111111 12245899999


Q ss_pred             cCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeec-cCCCccce
Q psy15734        243 ILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNG-VVPSVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~-~~~~~~w~  306 (314)
                      ++.+|+|.|+|.|.|..|.....+.+.+............+..+....+.|.+.+. |.|.|+|.
T Consensus        90 v~~~D~G~Y~C~a~n~~~~~~~~v~~~~~~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i~W~  154 (226)
T 4f80_A           90 VTASDSGKYLCYFQDGDFYEKALVELKVAALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQIQWS  154 (226)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEEEEEEEEEBCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEEEEE
T ss_pred             CchHHCeeEEEEEECCCcEEEEEEEEeeccceecccceeeeccCCceeeEEEeccCCCCCEEEEE
Confidence            99999999999999998888777777776665555555555566667799999985 88999995

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.59  E-value=1e-14  Score=97.70  Aligned_cols=88  Identities=16%  Similarity=0.108  Sum_probs=68.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|..++.+..+.+|+++.|.|.+.+ |+|.+.|+++ +..+....++.+.....    ..+|.|.+++.+|+|.|+|.
T Consensus         5 ~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~-g~~i~~~~~~~i~~~g~----~~~L~I~~v~~~D~G~Y~C~   78 (93)
T 1waa_A            5 LIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLK-GQPLAASPDCEIIEDGK----KHILILHNCQLGMTGEVSFQ   78 (93)
T ss_dssp             CCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEET-TEECCCBTTEEEEEETT----EEEEEECSCCGGGCEEEEEE
T ss_pred             CcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEEC-CEECcCCCCEEEEEECC----EEEEEECCCChhhCEEEEEE
Confidence            677888888899999999999999986 5588999997 55555556665543221    24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|.    ..+..|.|..
T Consensus        79 a~n~----~~sa~L~V~~   92 (93)
T 1waa_A           79 AANT----KSAANLKVKE   92 (93)
T ss_dssp             ETTE----EEEEEEEEEC
T ss_pred             ECCC----cEEEEEEEEc
Confidence            9874    3566676653

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.59  E-value=2.9e-14  Score=99.63  Aligned_cols=99  Identities=13%  Similarity=0.197  Sum_probs=77.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++..         +..+.++.+.... ....|.|.+++.+|
T Consensus         5 ~~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~~~---------~~~~~~~~~~~~~-~~~~L~I~~v~~~D   74 (114)
T 2cqv_A            5 SSGPQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ---------IQESEHMKVENSE-NGSKLTILAARQEH   74 (114)
T ss_dssp             CCCCEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSB---------CCCSSSEEEEECS-SEEEEEETTCCTTT
T ss_pred             CCCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEEEEEECCEE---------CcCCCCEEEEEcC-CEEEEEECCCChhc
Confidence            3578898899999999999999999999999999999995533         2233456555432 23489999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCcee
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRIL  127 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~  127 (314)
                      +|.|+|.+.|. +.....+.|.|..+|...
T Consensus        75 ~G~Y~C~a~N~~g~~~~~~~l~V~~~p~~P  104 (114)
T 2cqv_A           75 CGCYTLLVENKLGSRQAQVNLTVVDKPDPP  104 (114)
T ss_dssp             CEEEEEEEECSSCEEECCEEEEEECSCSCC
T ss_pred             CEEEEEEEEECCCcEEEEEEEEEECCCCCC
Confidence            99999999775 555666788888766543

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=99.59  E-value=1.2e-14  Score=122.05  Aligned_cols=119  Identities=13%  Similarity=0.041  Sum_probs=73.9

Q ss_pred             eeecCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        186 GAFVSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      .+.+|+++.|.|.+.|. |. +.+.|++++........ .......+.|...+.|.|.++..+| |.|+|.|.|..+...
T Consensus       131 ~~~~g~~v~L~C~~~g~~P~~~~v~W~k~g~~~~~~~~-~~~~~~~~~~~~~s~L~i~~~~~~d-G~Y~C~a~n~~~~~~  208 (344)
T 1za6_B          131 KSTSGGTAALGCLVKDYFPEPVTVSWNSGALTSGVHTF-PAVLQSSGLYSLSSVVTVPSSSLGT-QTYICNVNHKPSNTK  208 (344)
T ss_dssp             TTTSSSEEEEEEEEEEEBSSCCCEEETTTTBCTTEEEC-CCEECTTSCEEEEEEEEEETTHHHH-BCEEEEEEEGGGTEE
T ss_pred             cccCCCcEEEEEEEeeEECCCeEEEEecCCccCceeEC-CCeECCCCCEEEEEEEEEcHHHcCC-CcEEEEEEeCCCCcc
Confidence            45789999999999997 54 79999997543211100 0011112335556799999999888 999999999988654


Q ss_pred             eEEEEE--E--------------------EecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        264 GFIKVY--V--------------------NLVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       264 ~~~~l~--V--------------------~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ....+.  |                    .....+.+.+....    ......+.|.|.+++++  .++|.
T Consensus       209 ~~~~~~~~v~~~~~~~~~~~~~~~l~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  279 (344)
T 1za6_B          209 VDKKVEPKSCDKTHTCPPCGGGSSGGGSGGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWE  279 (344)
T ss_dssp             EEEEECCCCC--------------------CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSSCCEEEEE
T ss_pred             ceEeecccccccccccCCCCCCccccccCCCCcCCEEEEeCCChHhccCCcEEEEEEEeeEECCCeEEEEE
Confidence            333222  1                    11122333332211    22336799999997554  67884

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.59  E-value=1.5e-14  Score=99.95  Aligned_cols=105  Identities=24%  Similarity=0.393  Sum_probs=77.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ...|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++.+...+... ......+.|+.+.......++|.|.+++.+|
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~D   82 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFD-DKKALRDNRIELVRASWHELSISVSDVSLSD   82 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEET-TEECSCCTTEEEEEESSSEEEEEECSCCGGG
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEc-CCcccccCcEEEeecCCCcEEEEECCCChhH
Confidence            345788888899999999999999999998888999999654333221 1222345577765544456689999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCC
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPP  124 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p  124 (314)
                      +|.|+|.+.+.+..+..+.|.|.++|
T Consensus        83 ~G~Y~C~~~n~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           83 EGQYTCSLFTMPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             CEEEEEEECSSSCEEEEEEEEEECCC
T ss_pred             CeEEEEEEEcCCCcEEEEEEEEEcCC
Confidence            99999999775556667788887765

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.59  E-value=1.9e-14  Score=100.85  Aligned_cols=101  Identities=20%  Similarity=0.354  Sum_probs=79.2

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ....+|.|+..+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+.       ....++.+..+.....+|.|.+++.
T Consensus        11 ~~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~~-~~~~-------~~~~~~~~~~~~~~~~~L~I~~v~~   82 (116)
T 2kkq_A           11 EHKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKLFWKRNN-EMVQ-------FNTDRISLYQDNTGRVTLLIKDVNK   82 (116)
T ss_dssp             CCCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEEEEEETT-EECC-------CCBTTEEEEECTTCEEEEEEEEECG
T ss_pred             CCCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEEEEEECC-EECc-------CCCCeEEEEeCCCCeEEEEECCCCc
Confidence            3456899999999999999999999999999888999999955 3221       1245666665554455899999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      +|+|.|+|.+.|. +.....+.|.|..+|.
T Consensus        83 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~  112 (116)
T 2kkq_A           83 KDAGWYTVSAVNEAGVTTCNTRLDVTARPN  112 (116)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECCSC
T ss_pred             ccCEEEEEEEEcCCCeEEEEEEEEEeCCCC
Confidence            9999999999775 4455667788877664

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=99.59  E-value=1.7e-14  Score=111.57  Aligned_cols=114  Identities=14%  Similarity=0.079  Sum_probs=81.6

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+.+|+++.|.|.+.|.|.|.+.|++..+..+ . ..  .. ....   ...|.|.+++.+|+|.|+|.|.|..|..+.
T Consensus        11 ~~~~~G~~v~L~C~~~g~P~p~i~W~~~~~~~~-~-~~--~~-~~~~---~~~L~I~~v~~~D~G~Y~C~a~n~~~~~~~   82 (202)
T 1vca_A           11 YLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-N-GK--VT-NEGT---TSTLTMNPVSFGNEHSYLCTATCESRKLEK   82 (202)
T ss_dssp             EEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-S-SE--EE-EETT---EEEEEESSCCGGGCSEEEEEEEETTEEEEE
T ss_pred             EEEcCCCcEEEEEeecCCCCCeEEEECCCCCCc-c-ce--EE-EcCC---ccEEEECcCCHHHCEEEEEEEEECCceEee
Confidence            345599999999999999999999998432211 1 11  11 1111   237999999999999999999999988888


Q ss_pred             EEEEEEEecCCCeeEEE--EccccccEeEEEEEeeccCC---Cccce
Q psy15734        265 FIKVYVNLVDGDIFQIR--KMSRLHMGAYLCIASNGVVP---SVSHR  306 (314)
Q Consensus       265 ~~~l~V~~~~~~~~~~~--~~~~~~~g~~~C~a~~~~~~---~~~w~  306 (314)
                      .+.|.|...|..+....  .+..++...++|.+.+.+++   .++|.
T Consensus        83 ~~~l~V~~~p~~~~~~~~~~~~~G~~~~L~C~~~~~~p~~~~~i~W~  129 (202)
T 1vca_A           83 GIQVEIYSFPKDPEIHLSGPLEAGKPITVKCSVADVYPFDRLEIDLL  129 (202)
T ss_dssp             EEEEEEEBCCSCCEEEESSCEETTSCEEEEEEEEEEBSGGGEEEEEE
T ss_pred             EEEEEEEeCCCCCEeCCceEEcCCCCEEEEEEECCcCCCCCeEEEEE
Confidence            89999988765433222  23344556799999987543   57884

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=99.59  E-value=1.1e-14  Score=113.20  Aligned_cols=125  Identities=12%  Similarity=0.134  Sum_probs=93.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee---------c--CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII---------T--GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---------~--~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      |..+..++....+.+|+++.|.|.+.+.|.+.+.|++++.....         .  ..++.   ..+.     .|.|.++
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~---~~~~-----~L~i~~v   72 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVT---FSSS-----GITFSSV   72 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEE---EETT-----EEEESCC
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEEEEEECCCceeeEEecCCcccccccCcEE---eece-----eEEEccc
Confidence            45677788888999999999999999999999999997554211         0  11111   1223     8999999


Q ss_pred             CCCCCeEEEEEEeeCCC--CceeEEEEEEEecCCCeeEEE--EccccccEeEEEE-EeeccCCCccceE
Q psy15734        244 LSHQFGSYRCVAVNALG--ETDGFIKVYVNLVDGDIFQIR--KMSRLHMGAYLCI-ASNGVVPSVSHRI  307 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~C~-a~~~~~~~~~w~v  307 (314)
                      ..+|+|.|+|.|.|..|  .....+.|.|..+|.......  .+..++...+.|. +.+.|.|.+.|..
T Consensus        73 ~~~D~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i~W~~  141 (212)
T 1f97_A           73 TRKDNGEYTCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFK  141 (212)
T ss_dssp             CGGGCEEEEEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEEEEEE
T ss_pred             CcccCeEEEEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEEEEEe
Confidence            99999999999999977  446677888877765433322  2344455679999 7889999999953

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=99.59  E-value=1.1e-14  Score=109.31  Aligned_cols=120  Identities=18%  Similarity=0.271  Sum_probs=84.4

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |.+...+....+.+|+++.|.|.+.+.| .+.+.|++++ ..+....         .     .+.|.++..+|+|.|+|.
T Consensus         5 p~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~~~~W~~~g-~~~~~~~---------~-----~~~~~~~~~~d~G~Y~C~   69 (170)
T 3ry4_A            5 AVLKLEPPWINVLQEDSVTLTCQGARSPESDSIQWFHNG-NLIPTHT---------Q-----PSYRFKANNNDSGEYTCQ   69 (170)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEESCCCSSSSCEEEEETT-EECTTCC---------S-----SEEEEECCGGGCEEEEEE
T ss_pred             CEEEeCCCCeEEECCCcEEEEEEecCCCCcceEEEEECC-eEcccCc---------c-----ceEEEecccccCeEEEEE
Confidence            5566667777899999999999999987 6799999964 3332221         1     567889999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe---------------------------------------------cCCCeeEEEEccccccE
Q psy15734        255 AVNALGETDGFIKVYVNL---------------------------------------------VDGDIFQIRKMSRLHMG  289 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~---------------------------------------------~~~~~~~~~~~~~~~~g  289 (314)
                      +.|......  +.|.|..                                             .....|.+..+...|.|
T Consensus        70 ~~~~~~s~~--~~l~v~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~~~W~~~g~~~~~~~~~~~L~i~~v~~~d~G  147 (170)
T 3ry4_A           70 TGQTSLSDP--VHLTVLFEWLVLQTPHLEFQEGETIMLRCHSWKDKPLVKVTFFQNGKSQKFSHLDPTFSIPQANHSHSG  147 (170)
T ss_dssp             ETTSBCCCC--EEEEEECCSEEEECSCSEECTTCCEEEEEEEGGGCCEEEEEEEETTEEEEEESSCCEEEESSCCGGGCE
T ss_pred             EeCCCceEe--EEEEEECCceEecCCCceeecCCeEEEEEECCCCCCCceEEEEECCeEccccCCCCeEEEEeccccCCE
Confidence            998655444  3343321                                             11234555566677778


Q ss_pred             eEEEEEeeccCCCccceEEEEEE
Q psy15734        290 AYLCIASNGVVPSVSHRIMVTVH  312 (314)
Q Consensus       290 ~~~C~a~~~~~~~~~w~v~l~v~  312 (314)
                      .|+|.|.|..+...+-.+.|.|+
T Consensus       148 ~Y~C~a~n~~g~~~s~~~~l~V~  170 (170)
T 3ry4_A          148 DYHCTGNIGYTLFSSKPVTITVQ  170 (170)
T ss_dssp             EEEEEEEETTEEEECCCEEEEEC
T ss_pred             EEEEEEEeCcCccccccEEEEEC
Confidence            88888887776556666776663

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=99.59  E-value=4e-15  Score=117.42  Aligned_cols=127  Identities=16%  Similarity=0.206  Sum_probs=93.7

Q ss_pred             CCeEEcCC----CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceee--eEeeCCeeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPN----QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED--SRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~----~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~--~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      +|.+...+    ....+.+|+++.|.|.+.+.|.+.+.|++++ ..+.....+..  ....+.     .|.|.++..+|+
T Consensus        15 ~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~-----~L~i~~~~~~d~   88 (231)
T 3ojm_B           15 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQEHRIGGYKVRNQHW-----SLIMESVVPSDK   88 (231)
T ss_dssp             EEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEEEEEETT-EECCGGGSTTCCEEEGGGT-----EEEECSCCGGGC
T ss_pred             CCccccccccCceeEEEccCCCEEEEEecccCCCCeEEEEECC-ccccccccccceeeecCcc-----eEEEecCCcccC
Confidence            45554444    6678999999999999999999999999974 43333322221  112222     899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEecCCCeeEE-------EEccccccEeEEEEEeeccCCCccceE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNLVDGDIFQI-------RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~-------~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|+|.|.|..|.....+.|.|...+.....+       ..+..++...+.|.+.+.|.|.+.|..
T Consensus        89 G~Y~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v~W~~  154 (231)
T 3ojm_B           89 GNYTCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIK  154 (231)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEEEEEE
T ss_pred             EEEEEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEEEEEE
Confidence            99999999999988888888887654321111       233345556799999999999999975

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.58  E-value=2.7e-15  Score=102.32  Aligned_cols=90  Identities=20%  Similarity=0.310  Sum_probs=67.7

Q ss_pred             CCeEEcCC----CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee-ee-EeeCCeeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPN----QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE-DS-RLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~----~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~-~~-~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      ||.|...+    ....+.+|+++.|.|.+.|.|.|.+.|++++. .+....... .. ...+.     .|.|.++..+|+
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~~-~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~   77 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGK-EFKQEHRIGGYKVRNQHW-----SLIMESVVPSDK   77 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETTE-ECCGGGSTTCCEEEGGGT-----EEEECSCCGGGC
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECCE-EcccccccccEEEecCeE-----EEEEccCCcCCC
Confidence            35555433    45678899999999999999999999999744 333322221 11 11222     899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      |.|+|.|.|..|.....+.|.|
T Consensus        78 G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           78 GNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEeCCCEEEEEEEEEE
Confidence            9999999999999888888776

>1hxm_A Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.57  E-value=1.4e-13  Score=108.45  Aligned_cols=86  Identities=16%  Similarity=0.333  Sum_probs=59.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-e--eEEEeeeee--eecCcCEEEEeC-CceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-Q--TILSIHHKV--VTQNKRVSITFN-DHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~--~~~~~~~~~--~~~~~~~~~~~~-~~~~~~L~i~~~~   95 (314)
                      +..++..+.+.+|++++|.|.+.+.+  ...+.|||... .  ..+......  ....+|+.+..+ ....++|.|.+++
T Consensus         4 v~q~p~~v~v~~G~~vtL~C~~s~~~~~~~~v~W~rq~~g~~~~~l~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I~~v~   83 (229)
T 1hxm_A            4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (229)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             cEeCCCEEEEcCCCCEEEEeEecCCccCcceEEEEEECCCCCcEEEEEcCCccCCCcCCeEEEEEcCCCCEEEEEECcCC
Confidence            44567788999999999999998543  46899998632 1  111111101  112468877654 3345689999999


Q ss_pred             CCCCeEEEEEEecC
Q psy15734         96 ETDRGWYMCQINTV  109 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~  109 (314)
                      .+|+|.|.|.+.+.
T Consensus        84 ~~Dsg~Y~C~~~~~   97 (229)
T 1hxm_A           84 ERDEGSYYCACDTL   97 (229)
T ss_dssp             GGGCEEEEEEEECC
T ss_pred             HhHCeEEEEEEecC
Confidence            99999999999653

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=99.57  E-value=1.5e-14  Score=115.07  Aligned_cols=120  Identities=15%  Similarity=0.187  Sum_probs=89.4

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCcee--eeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYE--DSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~--~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +....+.+|+++.|.|.+.+.|.+.+.|++++.. +.......  .....+.     .|.|.+++.+|+|.|+|.+.|..
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~-~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~~~~~~   95 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSISWLKNGRE-FRGEHRIGGIKLRHQQW-----SLVMESVVPSDRGNYTCVVENKF   95 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEEEEEETTEE-CCGGGSTTCCEEEGGGT-----EEEECSCCGGGCEEEEEEEEETT
T ss_pred             CcceEEcCCCeEEEEEEecCCCCceeEEEECCcc-cCCCCcccceeeeccce-----EEEEEeCCcccCEEEEEEEeecC
Confidence            3456789999999999999999999999997443 33322221  1112222     89999999999999999999999


Q ss_pred             CCceeEEEEEEEecCCC-eeEE------EEccccccEeEEEEEeeccCCCccceE
Q psy15734        260 GETDGFIKVYVNLVDGD-IFQI------RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       260 g~~~~~~~l~V~~~~~~-~~~~------~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.....+.|.|...+.. +...      ..+..++...+.|.+.+.+.|.+.|..
T Consensus        96 ~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v~W~~  150 (241)
T 3grw_A           96 GSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHIQWLK  150 (241)
T ss_dssp             EEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEEEEEE
T ss_pred             CceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEEEEEE
Confidence            98888888888774332 2221      123345556799999999999999975

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=99.57  E-value=3.2e-15  Score=116.96  Aligned_cols=131  Identities=14%  Similarity=0.196  Sum_probs=92.9

Q ss_pred             CCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       174 ~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      .+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++.. +....  ..... ..++ .....|.|.+++.+|+|.|
T Consensus         8 ~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v~W~~~g~~-~~~~~~~~~~~~-~~~~-~~~~~l~i~~v~~~d~G~Y   84 (217)
T 2vr9_A            8 QSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTIEWFKDGEP-VSTNEKKSHRVQ-FKDG-ALFFYRTMQGKKEQDGGEY   84 (217)
T ss_dssp             CCCEEEECCCCEEECTTSCEEECCEEECSSCCEEEEEETTEE-CCCSSSSSSEEE-CTTS-CEEESSCCBSSSCBCCEEE
T ss_pred             CCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeEEEEECCcC-ccCCCccceeEE-ecCC-ceEEEEEeccCCcccCceE
Confidence            378888888888999999999999999999999999997443 33322  11111 1222 1122447889999999999


Q ss_pred             EEEEeeCCCCc-eeEEEEEEEecCCCeeE---EEEccccccEeEEEEE-eeccCCCccceE
Q psy15734        252 RCVAVNALGET-DGFIKVYVNLVDGDIFQ---IRKMSRLHMGAYLCIA-SNGVVPSVSHRI  307 (314)
Q Consensus       252 ~C~a~n~~g~~-~~~~~l~V~~~~~~~~~---~~~~~~~~~g~~~C~a-~~~~~~~~~w~v  307 (314)
                      +|.|.|..|.. ...+.|.|...+.....   ...+..++...+.|.+ .+.|.|.+.|..
T Consensus        85 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~  145 (217)
T 2vr9_A           85 WCVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTLIWIK  145 (217)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEEEEEE
T ss_pred             EEEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeEEEEE
Confidence            99999998865 34566666654332221   1234455667799999 889999999964

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.57  E-value=8.6e-15  Score=97.90  Aligned_cols=84  Identities=12%  Similarity=0.201  Sum_probs=66.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ++.+...+....+.+|+++.|.|.+.|.|.|.+.|++++ ..+....        ..     .|.|.++..+|+|.|+|.
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~-~~~~~~~--------~~-----~L~i~~v~~~d~G~Y~C~   68 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE-LPLTHET--------KK-----LYMVPYVDLEHQGTYWCH   68 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETT-EECTTCC--------SS-----EEEESSCCGGGCEEEEEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCC-eeCCcCC--------CC-----eEEECCCCHHhCEEEEEE
Confidence            356777788888999999999999999999999999974 3332221        12     899999999999999999


Q ss_pred             EeeCCCCce-eEEEEEEEe
Q psy15734        255 AVNALGETD-GFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~-~~~~l~V~~  272 (314)
                      |.|..|... ..+.|.|..
T Consensus        69 a~n~~g~~~s~~~~l~V~~   87 (91)
T 3bfo_A           69 VYNDRDSQDSKKVEIIIDE   87 (91)
T ss_dssp             EECSSCEEECCCEEEEEC-
T ss_pred             EEcCCCCEEeeeEEEEEeh
Confidence            999999654 556676643

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.56  E-value=1e-14  Score=95.47  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=62.4

Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..+.+.+|+++.|.|.+.+ |.|.+.|+++ +..+..+.++.+....+    ...|.|.++..+|+|.|+|.|.    ..
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v~W~k~-g~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~----n~   73 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPVRWYKD-GERLASQGRVQLEQAGA----RQVLRVQGARSGDAGEYLCDAP----QD   73 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTCEEEET-TEECCCCSSEEEEECSS----CEEEEESSCSSTTCEEEEEECT----TT
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEEEEEEC-CEEccccccEEEeecCC----eEEEEecCCCCcccEEEEEEEC----CE
Confidence            4567889999999999976 9999999996 55565666666544322    2489999999999999999984    45


Q ss_pred             eeEEEEEEEe
Q psy15734        263 DGFIKVYVNL  272 (314)
Q Consensus       263 ~~~~~l~V~~  272 (314)
                      ..++.|.|..
T Consensus        74 ~~~a~l~V~e   83 (84)
T 2lu7_A           74 SRIFLVSVEE   83 (84)
T ss_dssp             CEEEEEEECC
T ss_pred             EEEEEEEEEC
Confidence            6777777754

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=99.56  E-value=3.9e-14  Score=97.87  Aligned_cols=94  Identities=14%  Similarity=0.106  Sum_probs=70.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-------CceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-------DDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-------~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      .+...+....+.+|+++.|.|.+.+.|.+.+.|++++...+...       .++.+.....   ....|.|.+++.+|+|
T Consensus         8 ~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~D~G   84 (108)
T 3m45_A            8 GQFPLTQNVTVVEGGTAILTCRVDQNDNTSLQWSNPAQQTLYFDDKKALRDNRIELVRASW---HELSISVSDVSLSDEG   84 (108)
T ss_dssp             CCCEECCCEEEETTSCEEEEEEESSCSSCCEEEECTTCCEEEETTEECSCCTTEEEEEESS---SEEEEEECSCCGGGCE
T ss_pred             CccccCCeeEEEeCCcEEEEeEEcCCCccEEEEEcCCCceEEEcCCcccccCcEEEeecCC---CcEEEEECCCChhHCe
Confidence            34445667789999999999999999999999999755222221       1333222211   2458999999999999


Q ss_pred             EEEEEEeeCCCCceeEEEEEEEecC
Q psy15734        250 SYRCVAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      .|+|.|.| .+.....+.|.|..+|
T Consensus        85 ~Y~C~~~n-~~~~~~~~~L~V~~~P  108 (108)
T 3m45_A           85 QYTCSLFT-MPVKTSKAYLTVLGVP  108 (108)
T ss_dssp             EEEEEECS-SSCEEEEEEEEEECCC
T ss_pred             EEEEEEEc-CCCcEEEEEEEEEcCC
Confidence            99999999 8888888888887653

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.56  E-value=1.2e-14  Score=99.66  Aligned_cols=93  Identities=17%  Similarity=0.232  Sum_probs=73.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|..++....+.+|+++.|.|.+.+ |.+.+.|++++ ..+....++.+.....    .+.|.|.++..+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g-~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2edf_A            8 PAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDR-KAIRKSQKYDVVCEGT----MAMLVIRGASLKDAGEYTCE   81 (103)
T ss_dssp             CCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESS-CBCCCSSSEEEEEETT----EEEEEESSCCTTTCSEEEEE
T ss_pred             CcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECC-EEccCCCCEEEEECCC----EEEEEECCCCcccCEEEEEE
Confidence            677888888889999999999999998 88899999974 4444445554443221    35899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCCe
Q psy15734        255 AVNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      |.|    ....+.|.|..+|.++
T Consensus        82 a~n----~~~~~~l~V~~~p~~~  100 (103)
T 2edf_A           82 VEA----SKSTASLHVEEKASGP  100 (103)
T ss_dssp             CSS----CEEEEEEEECCCSSSS
T ss_pred             Ecc----CCcEEEEEEeCCCCCC
Confidence            999    4678888888776543

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=99.56  E-value=2.7e-14  Score=111.84  Aligned_cols=119  Identities=16%  Similarity=0.222  Sum_probs=90.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .+.|...+....+.+|+++.|.|.+.+.|.+.+.|++++.. +...        .+.     .|.|.++..+|+|.|+|.
T Consensus        18 ~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~-~~~~--------~~~-----~L~i~~v~~~d~G~Y~C~   83 (218)
T 3k0w_A           18 GSKITVNPESKAVLAGQFVKLCCRATGHPFVQYQWFKMNKE-IPNG--------NTS-----ELIFNAVHVKDAGFYVCR   83 (218)
T ss_dssp             -CCEEECCCCEEEETTSBEEEECEETTTTSSEEEEEETTEE-CTTC--------CSS-----EEEETTCCGGGCEEEEEE
T ss_pred             CCEEEECCCCeEEeCCCcEEEEeeecCCCCCEEEEEECCEE-CCCC--------CCC-----EEEEccCChhhCeEeEEE
Confidence            56777788888999999999999999999999999997443 2221        122     899999999999999999


Q ss_pred             EeeCCCCc-eeEEEEEEEecCC-------------CeeEE----EEccccccEeEEEEEeeccCCCccceE
Q psy15734        255 AVNALGET-DGFIKVYVNLVDG-------------DIFQI----RKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       255 a~n~~g~~-~~~~~l~V~~~~~-------------~~~~~----~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|..|.. +..+.|.|...+.             +.+..    ..+..++...+.|.+.+.|.+.+.|..
T Consensus        84 ~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v~W~~  154 (218)
T 3k0w_A           84 VNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFK  154 (218)
T ss_dssp             EECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEEEEEE
T ss_pred             EEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeEEEEE
Confidence            99998755 5567777776531             22222    133445556799999999999999953

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.56  E-value=6.7e-14  Score=106.96  Aligned_cols=88  Identities=14%  Similarity=0.139  Sum_probs=59.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.. .+.+|++++|.|.+.+. .+.+.|++++............ ..     ....|.|.+++.+|+|.|+|.
T Consensus         4 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~-~~~~~w~k~g~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~D~G~Y~C~   75 (188)
T 1oll_A            4 KPFIWAEPHF-MVPKEKQVTICCQGNYG-AVEYQLHFEGSLFAVDRPKPPE-RI-----NKVKFYIPDMNSRMAGQYSCI   75 (188)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCTT-CCEEEEEETTEEEEEECCSSCT-TC-----CEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeecCC-cCCCCCCEEEEEecCCC-CCEEEEEECCCcccccccccCC-Cc-----ceeEEEeCcCCcccCeEEEEE
Confidence            4666665555 78999999999999764 4688999975443321111100 01     124899999999999999999


Q ss_pred             EeeCCCC--ceeEEEEEE
Q psy15734        255 AVNALGE--TDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~--~~~~~~l~V  270 (314)
                      +.|..+.  .+..+.|.|
T Consensus        76 ~~~~~~~~~~s~~~~l~V   93 (188)
T 1oll_A           76 YRVGELWSEPSNLLDLVV   93 (188)
T ss_dssp             EEETTEECCCCCCEEEEE
T ss_pred             ecCCCCCCCCCCceEEEe
Confidence            9986542  234455544

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=99.55  E-value=3.1e-14  Score=111.71  Aligned_cols=127  Identities=19%  Similarity=0.169  Sum_probs=87.5

Q ss_pred             cCCCcceeecCccEEEEEEEeecCC-----ceeEEecCCCeeeecCC----------c--eeeeEeeCC-eeeEEEEEEe
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPA-----SLNYWTNEKGDMIITGD----------D--YEDSRLING-YSCHMTLKIR  241 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~~~~~~----------~--~~~~~~~~~-~~~~s~L~i~  241 (314)
                      .++..+.+.+|+++.|.|.+.+.|.     +.+.|++++........          .  -+.....+. .....+|.|.
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~~~~~~~v~W~~~~~~v~~~~~g~~~~~~~~~~~~~r~~~~~~~~~~~~~~L~I~   85 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQLDLAALIVYWEMEDKNIIQFVHGEEDLKVQHSSYRQRARLLKDQLSLGNAALQIT   85 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSCCTTTCEEEEEETTEEEEEEETTEECSSSSCGGGSSSEEECHHHHTTTEEEEEES
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCCCCccEEEEEEECCcEEEEEeCCccccccccccccCceEEccccccCCEEEEEEc
Confidence            3556678899999999999988874     38999997422111000          0  011111110 0123489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEE--EccccccEeEEEEEeeccCCCccceE
Q psy15734        242 SILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIR--KMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~--~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      +++.+|+|.|+|.|.| .|.....+.|.|..++..+....  .+..++...+.|.|.+.|.|.+.|..
T Consensus        86 ~v~~~D~G~Y~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i~W~~  152 (222)
T 3sbw_C           86 DVKLQDAGVYRCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEVIWTS  152 (222)
T ss_dssp             SCCGGGCEEEEEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEEEEEE
T ss_pred             CcccccCeEEEEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeEEEEE
Confidence            9999999999999999 66677888888887654433222  44555667899999999999999964

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=2.5e-14  Score=98.00  Aligned_cols=91  Identities=21%  Similarity=0.264  Sum_probs=69.2

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +.|...+....+.+|+++.|.|.+.+ |.+.+.|++++ ..+....  ++.+.....    ...|.|.+++.+|+|.|+|
T Consensus         8 ~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g-~~l~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C   81 (103)
T 1x44_A            8 IMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNG-EEIIPGPKSRYRIRVEGK----KHILIIEGATKADAAEYSV   81 (103)
T ss_dssp             CCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETT-EECCCSTTCSEEEEEETT----EEEEEEEEECTTTCSEEEE
T ss_pred             ceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECC-EECCCCCceEEEEEEcCC----EEEEEECCCCcccCEEEEE
Confidence            34666777788999999999999988 77999999974 4444444  344432211    2489999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecCCC
Q psy15734        254 VAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      .|.|    ....+.|.|...+.+
T Consensus        82 ~a~n----~~~~~~l~V~~~p~p  100 (103)
T 1x44_A           82 MTTG----GQSSAKLSVDLKSGP  100 (103)
T ss_dssp             EETT----EEEEEEEEEECCCSC
T ss_pred             EECC----CcEEEEEEEeCCCCC
Confidence            9987    567788888877644

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=99.55  E-value=6.9e-14  Score=109.02  Aligned_cols=126  Identities=17%  Similarity=0.193  Sum_probs=86.2

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Cee--ee---------cCCceeeeEeeCCeeeEEEEEEee
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GDM--II---------TGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~--~~---------~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +.+..++ ...+.+|+++.|.|.+.+.|.+.+.|++.+  +..  +.         ...++.... ..   ....|.|.+
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~   76 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYVHWYQQKAGQAPVLVIYEDNRRPSGIPDHFSGSN-SG---NMATLTISK   76 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ET---TEEEEEESS
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceEEEEEECCCCCcEEEEEECCccCCCccCcEEEEe-cC---CEEEEEECC
Confidence            4455666 788999999999999999999999999832  111  11         112332222 11   235899999


Q ss_pred             cCCCCCeEEEEEEeeCCC---CceeEEEEEEEecC--CCeeEEEEc----cccccEeEEEEEeeccCC--Cccce
Q psy15734        243 ILSHQFGSYRCVAVNALG---ETDGFIKVYVNLVD--GDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g---~~~~~~~l~V~~~~--~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ++.+|+|.|+|.|.|..+   .....+.|.|...+  .+.+.+...    ..++...+.|.+.+.+++  .+.|.
T Consensus        77 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  151 (213)
T 3mj8_L           77 AQAGDEADYYCQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYPADVAVTWE  151 (213)
T ss_dssp             CCGGGCEEEEEEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CChhhCEEEEEEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeCCCeEEEEE
Confidence            999999999999999988   34566777777432  233333221    134556799999996443  88895

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=99.55  E-value=6.2e-14  Score=93.85  Aligned_cols=90  Identities=18%  Similarity=0.176  Sum_probs=68.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+.+ +.+.+.|++++ ..+        ..+.++.+..++.. ..|.|.+++.+|
T Consensus         3 ~~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v~W~k~g-~~i--------~~~~~~~i~~~g~~-~~L~I~~v~~~D   71 (93)
T 1waa_A            3 MALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHGQWKLKG-QPL--------AASPDCEIIEDGKK-HILILHNCQLGM   71 (93)
T ss_dssp             CCCCCEEECCCCEEEETTSCEEEEEEESS-SSCCCEEEETT-EEC--------CCBTTEEEEEETTE-EEEEECSCCGGG
T ss_pred             CCCcEeeccCcceEEeCCCCEEEEEEECC-CCCeEEEEECC-EEC--------cCCCCEEEEEECCE-EEEEECCCChhh
Confidence            46789999999999999999999999976 45789999954 332        23456666554332 379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEe
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVV  122 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~  122 (314)
                      +|.|+|.+.|   ......|.|.+
T Consensus        72 ~G~Y~C~a~n---~~~sa~L~V~~   92 (93)
T 1waa_A           72 TGEVSFQAAN---TKSAANLKVKE   92 (93)
T ss_dssp             CEEEEEEETT---EEEEEEEEEEC
T ss_pred             CEEEEEEECC---CcEEEEEEEEc
Confidence            9999999965   23455666654

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=99.55  E-value=1.5e-14  Score=109.32  Aligned_cols=113  Identities=12%  Similarity=0.145  Sum_probs=81.3

Q ss_pred             ceeecCccEEEEEEEee--cCCceeEEecCCCeee---------ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        185 EGAFVSQTVELHCHTEA--FPASLNYWTNEKGDMI---------ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g--~p~p~~~W~~~~~~~~---------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +.+.+|+++.|.|...+  .|.+.+.|++++..+.         ....++.+  ..++     +|.|.+++.+|+|.|+|
T Consensus         6 v~~~~G~~v~L~c~~~~~~~~~~~i~W~k~~~~i~~~~~~~~~~~~~~r~~~--~~~g-----sL~I~~v~~~D~G~Y~C   78 (176)
T 1hng_A            6 VWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEI--LANG-----DLKIKNLTRDDSGTYNV   78 (176)
T ss_dssp             EEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEE--CTTS-----CEEESSCCGGGCEEEEE
T ss_pred             EEEEcCCcEEEcCCCCCcccccccEEEEeCCceeEEEcCCCeecCCCCeEEE--CCCC-----cEEEcccccccCEEEEE
Confidence            46789999999995433  6678999999754322         11222222  3444     79999999999999999


Q ss_pred             EEeeCCCCc--eeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        254 VAVNALGET--DGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       254 ~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|.|..|..  ...+.|.|...+..+.....   .....+.|.+.+.|+|.+.|..
T Consensus        79 ~~~n~~g~~~~~~~~~l~V~~~~~~p~i~~~---~~~v~L~C~~~g~p~p~i~W~~  131 (176)
T 1hng_A           79 TVYSTNGTRILNKALDLRILEMVSKPMIYWE---CSNATLTCEVLEGTDVELKLYQ  131 (176)
T ss_dssp             EEEETTCCEEEEEEEEEEEECCCCCCEEEEE---TTTTEEEEECSSCSSCEEEEEE
T ss_pred             EEEeCCCCEEEEEEEEEEEeCCCCCCEEEec---CCcEEEEEEecCCCCcEEEEEE
Confidence            999999986  67788888775443332221   1225799999999999999963

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.55  E-value=2.9e-14  Score=100.27  Aligned_cols=110  Identities=21%  Similarity=0.240  Sum_probs=81.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++. .+       ...+.++.+..++    .|.|.+++.+|
T Consensus         6 ~~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~g~-~~-------~~~~~~~~~~~~~----~L~i~~v~~~D   73 (118)
T 2eo9_A            6 SGPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTILWRKDGV-LV-------STQDSRIKQLENG----VLQIRYAKLGD   73 (118)
T ss_dssp             CCSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEEEEEESSS-BC-------CTTSTTEEEEETT----EEEEESCCGGG
T ss_pred             CCCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEEEEEECCE-EC-------cCCCCeEEEccCC----EEEEccCCcCC
Confidence            457888888999999999999999999998889999999543 22       1134455554433    79999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCceeeecCcceeEEecC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREG  140 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g  140 (314)
                      +|.|+|.+.|. +.....+.|.|..++.......+.+..+.+|
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~~p~~~~~~~~~~~~~G  116 (118)
T 2eo9_A           74 TGRYTCIASTPSGEATWSAYIEVQEFGVPVQPPRPTDPNLIPS  116 (118)
T ss_dssp             CCCEEEEEECSSCEEEEECCEEEECCSCCCCCCCCCCCCCCCC
T ss_pred             CEEEEEEEEcCCCcEEEEEEEEEEeCCCCccCCCCCCCccCCC
Confidence            99999999775 4455566788887765443333444444444

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=99.55  E-value=2.3e-14  Score=110.53  Aligned_cols=83  Identities=19%  Similarity=0.225  Sum_probs=61.9

Q ss_pred             CeEEcCCCcceeecCccEEEEEE-EeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCH-TEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~-~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +....++....+.+|+++.|.|. +.+.|. +.+.|++++................++     .|.|.++..+|+|.|+|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~L~C~~~~~~p~~~~v~W~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C   83 (201)
T 3s97_C            9 PFPPEERPEVRVKEGKGMVLLCDPPYHFPDDLSYRWLLNEFPVFITMDKRRFVSQTNG-----NLYIANVEASDKGNYSC   83 (201)
T ss_dssp             CCCSSCCCCEEEETTCCEEECCCCCSEESSCCEEEEEESSTTCBCCCSSSEEECTTTC-----CEEESSCCGGGCEEEEE
T ss_pred             ccCcCCCceEEEECCCCEEEeccccccCCCceEEEEEECCceeeeeeCCCeEEEcCCC-----eEEECcCCcccCeEEEE
Confidence            33344557778999999999999 899999 999999986554332222222222333     89999999999999999


Q ss_pred             EEeeCCCCce
Q psy15734        254 VAVNALGETD  263 (314)
Q Consensus       254 ~a~n~~g~~~  263 (314)
                      .+.|..+...
T Consensus        84 ~~~~~~~~~~   93 (201)
T 3s97_C           84 FVSSPSITKS   93 (201)
T ss_dssp             EEEEGGGTEE
T ss_pred             EEEecCCCcc
Confidence            9999765543

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.55  E-value=4.1e-14  Score=100.40  Aligned_cols=96  Identities=19%  Similarity=0.225  Sum_probs=71.5

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee-------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII-------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~-------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ...+....+.+|+++.|.|.+.+.|.+.+.|+++++..+.       ...++.+.....   ...+|.|.+++.+|+|.|
T Consensus         5 ~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y   81 (124)
T 3rbg_A            5 TNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLNEYPVLKNSKYQLLHHSA---NQLSITVPNVTLQDEGVY   81 (124)
T ss_dssp             CCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEETTEECSCSSCCEEEEEET---TEEEEEESSCCGGGCEEE
T ss_pred             cCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEeccccccCCcEEEEeCCC---CEEEEEECCCChHHCEEE
Confidence            3445667899999999999999999999999987665443       233333322111   135999999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEecCCCee
Q psy15734        252 RCVAVNALGETDGFIKVYVNLVDGDIF  278 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~~~~~~  278 (314)
                      +|.|.|. |.....+.|.|...|...+
T Consensus        82 ~C~a~n~-g~~~~~~~l~V~~~P~~~~  107 (124)
T 3rbg_A           82 KCLHYSD-SVSTKEVKVIVLATMKGEF  107 (124)
T ss_dssp             EEEEESS-SEEEEEEEEEEECC-----
T ss_pred             EEEEEcC-CCCcEEEEEEEEeCCCCCc
Confidence            9999999 8889999999988775443

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=99.55  E-value=3e-14  Score=96.83  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=70.1

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++ ..+        ..+.++.+.........|.|.+++.+|+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g-~~~--------~~~~~~~~~~~~~~~~~L~i~~v~~~D~   74 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG-VKI--------ERSDRIYWYWPEDNVCELVIRDVTGEDS   74 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EEC--------CCCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEEEEEECC-EEC--------CCCCCEEEEEcCCCEEEEEECCCCcCCC
Confidence            4688888899999999999999999999888999999954 322        2233444332222344799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEe
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      |.|+|.+.|. +.....+.|.|..
T Consensus        75 G~Y~C~a~N~~g~~~~~~~l~V~~   98 (99)
T 1g1c_A           75 ASIMVKAINIAGETSSHAFLLVQA   98 (99)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCCcEEEEEEEEEec
Confidence            9999999775 4444555666643

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=99.55  E-value=3.6e-14  Score=100.73  Aligned_cols=116  Identities=15%  Similarity=0.201  Sum_probs=74.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      +...+..+.+.+|++++|.|.+.+.+.+.+.|++.++..+... ......+.++.+.......++|.|.+++.+|+|.|+
T Consensus         4 ~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~-~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~Y~   82 (124)
T 3rbg_A            4 LTNHTETITVEEGQTLTLKCVTSLRKNSSLQWLTPSGFTIFLN-EYPVLKNSKYQLLHHSANQLSITVPNVTLQDEGVYK   82 (124)
T ss_dssp             CCCSEEEEEEETTSCEEEEEECCCCTTCEEEEECTTSCEEEET-TEECSCSSCCEEEEEETTEEEEEESSCCGGGCEEEE
T ss_pred             ccCCCccEEEcCCCCEEEEeEEeccCCCEEEEECCCCeEEEEe-ccccccCCcEEEEeCCCCEEEEEECCCChHHCEEEE
Confidence            4556778999999999999999988889999998655433221 111234556666543334568999999999999999


Q ss_pred             EEEecCCCcceeEEEEEEeCCceeeecCcceeEEecC
Q psy15734        104 CQINTVPMTSQKGYLQVVVPPRILLDRTSTDVVVREG  140 (314)
Q Consensus       104 C~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g  140 (314)
                      |.+.+.+.....+.|.|..+|.......|......+|
T Consensus        83 C~a~n~g~~~~~~~l~V~~~P~~~~~~~P~~~~~~~~  119 (124)
T 3rbg_A           83 CLHYSDSVSTKEVKVIVLATMKGEFCRYPSHWRPLEH  119 (124)
T ss_dssp             EEEESSSEEEEEEEEEEECC-----------------
T ss_pred             EEEEcCCCCcEEEEEEEEeCCCCCcccccCccccccc
Confidence            9997765566777888888886544333343333333

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.54  E-value=8e-14  Score=98.62  Aligned_cols=93  Identities=17%  Similarity=0.106  Sum_probs=67.4

Q ss_pred             CCCcceeecCccEEEEEEEeecC--CceeEEecCCCeeee----cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKGDMII----TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~~~~~----~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ++....+.+|+++.|.|.+.|.|  .+.+.|++++.....    ..... ...........++|.|.+++.+|+|.|+|.
T Consensus        14 p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~L~I~~v~~~DsG~Y~C~   92 (122)
T 3s35_X           14 PSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHKKLVNRDLK-TQSGSEMKKFLSTLTIDGVTRSDQGLYTCA   92 (122)
T ss_dssp             SCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHHHHBCCSCC-EEEETTEEEEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCceeeeeccc-cccCCceeeEEEEEEECCCCcccCEEEEEE
Confidence            44555789999999999999944  568899997653211    11111 101111122345899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecC
Q psy15734        255 AVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~  274 (314)
                      |.|..|.....+.|.|..+|
T Consensus        93 a~n~~g~~~~~~~l~V~~~p  112 (122)
T 3s35_X           93 ASSGLMTKKNSTFVRVHEKP  112 (122)
T ss_dssp             EECSSCEEEEEEEEEEEEEE
T ss_pred             EccCCCceEEEEEEEEeccC
Confidence            99999999999999998774

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.54  E-value=6.4e-14  Score=97.18  Aligned_cols=99  Identities=20%  Similarity=0.190  Sum_probs=76.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +       .....++.+.........|.|.+++.+|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g~~-~-------~~~~~~~~~~~~~~~~~~L~i~~v~~~D   77 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKIYWFKDGKQ-I-------SPKSDHYTIQRDLDGTCSLHTTASTLDD   77 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEEEEECSSCB-C-------CTTCSSEEEEECTTCEEEEEESSCCTTT
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEEEEEECCEE-C-------CCCCCeEEEEECCCcEEEEEECCCChhh
Confidence            4678888888999999999999999999988899999995432 2       1123456665543444579999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.|. +.....+.|.|..+|.
T Consensus        78 ~G~Y~C~a~N~~g~~~~~~~l~V~~~~~  105 (110)
T 2dm2_A           78 DGNYTIMAANPQGRISCTGRLMVQAVNS  105 (110)
T ss_dssp             CSCCEEEEECTTCCEEECCCEEEECCSC
T ss_pred             CEEEEEEEEECCCeEEEEEEEEEECCCC
Confidence            99999999775 5556666788876553

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=99.54  E-value=1.3e-15  Score=108.02  Aligned_cols=98  Identities=20%  Similarity=0.359  Sum_probs=75.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCce-eEEecCCCeeee-cCCceeeeEeeCCeeeEEEEEEeecCCCCC-eEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMII-TGDDYEDSRLINGYSCHMTLKIRSILSHQF-GSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~-G~Y  251 (314)
                      +|.|.. +....+.+|+++.|.|.+.|.|.|. +.|++++..+.. ...++.+..........+.|.|.++..+|+ |.|
T Consensus        14 ~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~~i~W~~~~~~l~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~~G~Y   92 (122)
T 2cry_A           14 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   92 (122)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCCccC-CCeEEEecCCCEEEEEEEeecCCCcEeEEEECCEEccCCCCCCEEEEEecCCCceEEEEEEcCCChhhCCceE
Confidence            666666 6777899999999999999999997 999997544332 134444432222222346999999999999 999


Q ss_pred             EEEEeeCCCCceeEEEEEEEec
Q psy15734        252 RCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      +|.|.|..|.....+.|.|...
T Consensus        93 ~C~a~N~~G~~~~~~~l~V~~~  114 (122)
T 2cry_A           93 NCTAWNSFGSDTEIIRLKEQGS  114 (122)
T ss_dssp             EEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEECCCCeEEEEEEEEECCC
Confidence            9999999999998888887654

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=99.54  E-value=1.7e-13  Score=106.96  Aligned_cols=114  Identities=14%  Similarity=0.182  Sum_probs=83.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +|.|. .+....+.+|+.+.|.|.+.|.|.|.+.|++++ ..+....  ++.+.....    .+.|.|.++..+|+|.|+
T Consensus        19 ~P~~~-~p~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~g-~~l~~~~~~~~~~~~~~~----~~~L~i~~~~~~d~G~Y~   92 (215)
T 3mtr_A           19 APKLQ-GPVAVYTWEGNQVNITCEVFAYPSATISWFRDG-QLLPSSNYSNIKIYNTPS----ASYLEVTPDSENDFGNYN   92 (215)
T ss_dssp             EEEEE-CCSEEEECTTCCEEEEEEEEEESCCEEEEEETT-EESSCSSSCSEEEEEETT----EEEEEECCCSGGGCEEEE
T ss_pred             CCccc-CCceEEEECCCCEEEEEEEeecCCCEEEEEECC-eECCCCCCccEEEecCCC----eeEEEEecCChhhCeEEE
Confidence            56663 455578899999999999999999999999974 4443332  222221111    359999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEE
Q psy15734        253 CVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCI  294 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~  294 (314)
                      |.|.|..|.....+.|.|..+|..+..+..........+.|.
T Consensus        93 C~a~n~~g~~~~~~~l~v~~~P~~p~~~~~~~~~~~~~l~w~  134 (215)
T 3mtr_A           93 CTAVNRIGQESLEFILVQADTPSSPSIDQVEPYSSTAQVQFD  134 (215)
T ss_dssp             EEEECSSCEEEEEEEEEECCCCCCCEEEEEEEETTEEEEEEE
T ss_pred             EEEEECCCceEEEEEEEECCCCCCCcceEEEEecceEEEEEe
Confidence            999999999999999999888776654433222333456665

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.54  E-value=1.8e-14  Score=95.85  Aligned_cols=86  Identities=20%  Similarity=0.280  Sum_probs=63.1

Q ss_pred             CCeEEcCCCcce--eecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEG--AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~--v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      |+.|..+.....  +.+|+++.|.|.+.+ |.|.+.|+++ +..+..+.++.+....+    ..+|.|.++..+|+|.|+
T Consensus         4 P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~-g~~i~~~~~~~i~~~~~----~~~L~I~~v~~~D~G~Y~   77 (91)
T 2lvc_A            4 PVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKD-GQEVEESDFVVLENEGP----HRRLVLPATQPSDGGEFQ   77 (91)
T ss_dssp             CCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEET-TSCCCCCSSCEEEEETT----EEEEEESSCCGGGCSEEE
T ss_pred             CcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEEC-CEEeeeeeeeeEEecCC----eEEEEeCCCChhhcEEEE
Confidence            566666665544  468999999999976 8899999997 45555566666543322    248999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEE
Q psy15734        253 CVAVNALGETDGFIKVYV  270 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V  270 (314)
                      |.|.|    .+.++.|.|
T Consensus        78 C~a~n----~~~~~~ltV   91 (91)
T 2lvc_A           78 CVAGD----ECAYFTVTI   91 (91)
T ss_dssp             EECSS----CEEEEEEEC
T ss_pred             EEEcc----eEEEEEEEC
Confidence            99865    455555543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=99.54  E-value=2.6e-14  Score=112.02  Aligned_cols=131  Identities=15%  Similarity=0.139  Sum_probs=86.9

Q ss_pred             CcceeecCccEEEEEEEeecCCce---eEEecCCCeeeecCC---------------ceeee---EeeCCeeeEEEEEEe
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASL---NYWTNEKGDMIITGD---------------DYEDS---RLINGYSCHMTLKIR  241 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~---~~W~~~~~~~~~~~~---------------~~~~~---~~~~~~~~~s~L~i~  241 (314)
                      ..+.+.+|++++|.|.+.+.|.+.   +.|+|+++.......               +....   ..........+|.|.
T Consensus         9 ~~V~~~~G~~v~L~C~~~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~sL~I~   88 (225)
T 4fmk_A            9 PEVRGRLGGTVELPCHLLPPTTERVSQVTWQRLDGTVVAAFHPSFGVDFPNSQFSKDRLSFVRARPETNADLRDATLAFR   88 (225)
T ss_dssp             SEEEEETTSCEEECCEECSSCCCEEEEEEEECTTSCEEEEEETTTEEECCCTTSCTTTEEECCCSCSCCSSCCBCCEEEC
T ss_pred             CEEEEecCCCEEEEEEEECCCCCceeEEEEEECCCcceEEEecccceeeccccccccceeeeccccccccccCcEEEEEc
Confidence            346788999999999999988764   789998655432100               00000   000001112379999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCceeE-EEEEEEe------------------------------------------------
Q psy15734        242 SILSHQFGSYRCVAVNALGETDGF-IKVYVNL------------------------------------------------  272 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~~-~~l~V~~------------------------------------------------  272 (314)
                      +++.+|+|.|+|.|.|..+..... ..+.+..                                                
T Consensus        89 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~~~w~~~~~~~~~~~~  168 (225)
T 4fmk_A           89 GLRVEDEGNYTCEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPARITWISSLGGEAKDTQ  168 (225)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCEEEEECSSCCEEEEEE
T ss_pred             cCCHHHCcceEEEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCEEEEEECCccccCCcc
Confidence            999999999999999987755433 2232210                                                


Q ss_pred             ---cCCC------eeEEEEccccccEeEEEEEeeccCC-CccceEEEEEEe
Q psy15734        273 ---VDGD------IFQIRKMSRLHMGAYLCIASNGVVP-SVSHRIMVTVHC  313 (314)
Q Consensus       273 ---~~~~------~~~~~~~~~~~~g~~~C~a~~~~~~-~~~w~v~l~v~~  313 (314)
                         ....      .|.+..+...+.|.|+|.|.|.... .++..++|.|+|
T Consensus       169 ~~~~~~~~~~~~s~L~i~~~~~~d~g~YtC~a~N~~~~~~~~~~v~l~V~Y  219 (225)
T 4fmk_A          169 EPGIQAGTVTIISRYSLVPVGRADGVKVTCRVEHESFEEPILLPVTLSVRY  219 (225)
T ss_dssp             EECSSTTCEEEEEEEEECCCGGGTTCEEEEEEECTTCSSCEEEEEECCBTT
T ss_pred             eEEecCCCEEEEEEEEEeeCCHHHCCEEEEEEEcCCCCeEEEEEEEEEEEE
Confidence               0011      2666777888899999999997644 567889999887

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=99.54  E-value=2.8e-14  Score=97.16  Aligned_cols=96  Identities=20%  Similarity=0.243  Sum_probs=69.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+.        ...+............|.|.+++.+|
T Consensus         3 ~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v~W~~~g-~~~~--------~~~~~~~~~~~~~~~~L~i~~v~~~D   73 (100)
T 2kdg_A            3 MGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDVSWYLNG-RTVQ--------SDDLHKMIVSEKGLHSLIFEVVRASD   73 (100)
T ss_dssp             CEEEECCCCCCCEEEETTCCEEEEEECEEESCCEEEEEETT-EEEC--------CCSSSCEEEETTTEEEEEESSCCGGG
T ss_pred             CCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEEEEEECC-EECc--------CCCcEEEEEcCCCeEEEEECCCCccc
Confidence            34678888888999999999999999998888999999954 3322        11111111112223479999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVP  123 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~  123 (314)
                      +|.|+|.+.|. +.....+.|.|..+
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~   99 (100)
T 2kdg_A           74 AGAYACVAKNRAGEATFTVQLDVLAK   99 (100)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEEcCCCeEEEEEEEEEEec
Confidence            99999999775 44455666776653

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=99.54  E-value=2.8e-14  Score=110.78  Aligned_cols=128  Identities=21%  Similarity=0.259  Sum_probs=84.9

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCee----ee----------cCCce--eeeEeeCCeeeEEEEEEeecC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDM----II----------TGDDY--EDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~----~~----------~~~~~--~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      .+....+.+|+++.|.|.+.+.|.+.+.|++++...    +.          ....+  +.....++     +|.|.+++
T Consensus         5 ~~~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~r~~~~~~~-----~L~i~~v~   79 (208)
T 3r4d_A            5 EAVPPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMIT   79 (208)
T ss_dssp             EEESSEEETTCCEEEEEECCCSSCSEEEEEESSCCCGGGEEEEEEGGGTEEEECTTCCSSEEECTTS-----CEEECSCC
T ss_pred             cCccceeecCCcEEEEEeCCCCCceEEEeccCCCCCccceEEEEecCCCccccCccccceeEEecCC-----eEEEcccc
Confidence            344467899999999999999999999999864211    00          00000  11122233     79999999


Q ss_pred             CCCCeEEEEEEeeCC-CCceeEEEEEEEecC-------------------------------------------------
Q psy15734        245 SHQFGSYRCVAVNAL-GETDGFIKVYVNLVD-------------------------------------------------  274 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~-------------------------------------------------  274 (314)
                      .+|+|.|+|.+.|.. +.....+.|.|...+                                                 
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~~g~~v~l~C~~~~~pp~i~W~~~g~~l~~~~~~~~~  159 (208)
T 3r4d_A           80 MKDMGVYTLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTTVKELDSVTLTCLSNDIGANIQWLFNSQSLQLTERMTLS  159 (208)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSSCCTTCCEEEEEECSCTTCEEEEEETTEECCCCSSEEEE
T ss_pred             ccCCeEEEEEEEcccCceeEEEEEEEeccCCCCCEEecCCceEeeCCCEEEEEECCCCCCceEEEECCEeCCCCCCeEEc
Confidence            999999999999985 455666677664321                                                 


Q ss_pred             --CCeeEEEEccccccEeEEEEEeeccCCCccceEEEEEEe
Q psy15734        275 --GDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTVHC  313 (314)
Q Consensus       275 --~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v~l~v~~  313 (314)
                        +..|.+..+...|.|.|+|.|.|..+...+-.++|.|++
T Consensus       160 ~~~~~L~i~~v~~~d~G~Y~C~a~N~~g~~~s~~~~l~v~~  200 (208)
T 3r4d_A          160 QNNSILRIDPIKREDAGEYQCEISNPVSVRRSNSIKLDIIF  200 (208)
T ss_dssp             TTTTEEEESSCCGGGCEEEEEEEECTTCCEECCCEEECCC-
T ss_pred             CCCCEEEEeccCHHhCeEEEEEEecCCCcccCCceeeeEEe
Confidence              133445555566666777777776666666666666654

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=99.54  E-value=1.4e-14  Score=112.50  Aligned_cols=129  Identities=9%  Similarity=0.041  Sum_probs=81.4

Q ss_pred             EEcCCCcce-eecCccEEEEEEEeecC---C-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        178 LTIPNQLEG-AFVSQTVELHCHTEAFP---A-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       178 ~~~~~~~~~-v~~g~~~~l~C~~~g~p---~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +..++.... +.+|+++.|.|.+.|.|   . +.+.|+++++...............+.|...+.|.|.+++.+|+|.|+
T Consensus         5 ~~~~P~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~   84 (207)
T 2vol_A            5 FIFPPKPKDVLTITLTPKVTCVVVDISKDDPEVQFSWFVDDVEVHTAQTKPREEQFNSTFRSVSELPIMHQDWLNGKEFK   84 (207)
T ss_dssp             EEECCCHHHHHSTTSCCEEEEEEEEECTTCCCCEEEEEETTEEECCCEEECCCEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcChhhhhccCCceEEEEEEeCcccCCCceEEEEEECCccccccccCCCcCcCCCcEEEEEEEEEehhHcCCCCEEE
Confidence            344555544 88999999999999985   2 489999986432211000011111222455668999999999999999


Q ss_pred             EEEeeCCCCcee--EEEEEEEecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        253 CVAVNALGETDG--FIKVYVNLVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       253 C~a~n~~g~~~~--~~~l~V~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      |.|.|..+....  .+.+.+.....+.+.+....    .++...+.|.|.+++++  .+.|.
T Consensus        85 C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 2vol_A           85 CRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPEDITVEWE  146 (207)
T ss_dssp             EEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECCCCEEEEE
Confidence            999999886533  33321122223444433222    23445799999996554  78885

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=99.53  E-value=1.5e-14  Score=110.46  Aligned_cols=63  Identities=16%  Similarity=0.205  Sum_probs=48.8

Q ss_pred             eeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEee-cCCCCCeEEEEEEeeCCCCcee
Q psy15734        186 GAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRS-ILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~-~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      .+..|+++.|.|.+.+ |+ .+.|++++ ..+...        .++     +|.|.+ +..+|+|.|+|.|.|..|....
T Consensus        10 v~~~G~~v~L~C~~~~-~~-~i~W~k~g-~~l~~~--------~~~-----~L~I~~~~~~~D~G~Y~C~a~n~~g~~~~   73 (186)
T 1jbj_A           10 VSISGTSVELTCPLDS-DE-NLKWEKNG-QELPQK--------HDK-----HLVLQDFSEVEDSGYYVCYTPASNKNTYL   73 (186)
T ss_dssp             EEEETTEEEEECSSCC-CT-TCEEEETT-EEECSC--------CCS-----EEEEESCCTTTSCEEEEEECSSCCCCCCE
T ss_pred             EEeCCcEEEEEEeCCC-CC-ceEEEECC-EECCCC--------CCC-----EEEECCCCccccCEEEEEEEEeCCCcEEE
Confidence            3467999999999988 44 49999974 433221        122     899999 9999999999999998876433

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=99.53  E-value=5.7e-14  Score=96.19  Aligned_cols=96  Identities=16%  Similarity=0.174  Sum_probs=73.0

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      +..+|.|..++..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.++.+...+. ...|.|.+++.+
T Consensus         5 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~k~~-~~~--------~~~~~~~~~~~~~-~~~L~i~~~~~~   74 (103)
T 3qp3_A            5 LDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEVKWYHNG-VEL--------QESSKIHYTNTSG-VLTLEILDCHTD   74 (103)
T ss_dssp             TCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETT-EEC--------CCCSSEEEEEETT-EEEEEECSCCGG
T ss_pred             CCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEEEEEECC-EEC--------CCCCCEEEEECCC-EEEEEEcCCCcc
Confidence            345788888999999999999999999999899999999954 322        2234555544322 237999999999


Q ss_pred             CCeEEEEEEecC-CCcceeEEEEEEeC
Q psy15734         98 DRGWYMCQINTV-PMTSQKGYLQVVVP  123 (314)
Q Consensus        98 d~G~Y~C~~~~~-~~~~~~~~l~v~~~  123 (314)
                      |+|.|+|.+.|. +.....+.|.|...
T Consensus        75 D~G~Y~C~a~N~~G~~~~~~~l~V~~~  101 (103)
T 3qp3_A           75 DSGTYRAVCTNYKGEASDYATLDVTGG  101 (103)
T ss_dssp             GCEEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             cCEEEEEEEEeCCCcEEEEEEEEEECC
Confidence            999999999775 44555667777643

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=99.53  E-value=1.5e-14  Score=111.63  Aligned_cols=123  Identities=15%  Similarity=0.089  Sum_probs=86.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+. ..+.+|++++|.|.+.+.|. .+.|++++......... ......+.     .|.|.++..+|+|.|+|.
T Consensus         5 ~P~i~~~p~-~~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~-~~~~~~~~-----~L~i~~v~~~D~G~Y~C~   76 (198)
T 1ugn_A            5 KPTLWAEPG-SVITQGSPVTLRCQGGQETQ-EYRLYREKKTAPWITRI-PQELVKKG-----QFPIPSITWEHTGRYRCY   76 (198)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEECCTTCC-CEEEEESSSCCHHHHTS-CHHHHTTT-----EEEESSCCGGGCEEEEEE
T ss_pred             CCeEeccCC-CcccCCCcEEEEEEecCCCc-EEEEEECCccccccccc-cccCCccc-----EEEECCCCHHHCeEEEEE
Confidence            566666555 37899999999999999876 69999975433211111 00112233     899999999999999999


Q ss_pred             EeeCC-C--CceeEEEEEEEecC-CCeeEEE---EccccccEeEEEEEeeccCCCccce
Q psy15734        255 AVNAL-G--ETDGFIKVYVNLVD-GDIFQIR---KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       255 a~n~~-g--~~~~~~~l~V~~~~-~~~~~~~---~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|.. |  ..+..+.|.|...+ .+.+...   .+..++...+.|.+.+. ++.+.|.
T Consensus        77 a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~-~~~v~W~  134 (198)
T 1ugn_A           77 YGSDTAGRSESSDPLELVVTGAYIKPTLSAQPSPVVNSGGNVTLQCDSQVA-FDGFILC  134 (198)
T ss_dssp             EEETTTEECCCCCCEEEEEECSSCCCEEEEESCSEEETTCCEEEEEECSSC-CSEEEEE
T ss_pred             EECCCCCcccCCccEEEEEcccccCCccccCCccccCCCCcEEEEEecCCC-CcEEEEE
Confidence            99987 5  44667888888733 3444432   23455556799999988 7888884

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=99.53  E-value=1.6e-14  Score=111.22  Aligned_cols=123  Identities=11%  Similarity=0.029  Sum_probs=81.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.. .+.+|++++|.|.+.+.|. .+.|++++.......... ....     ....|.|.+++.+|+|.|+|.
T Consensus         5 ~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~-~~~W~k~g~~~~~~~~~~-~~~~-----~~~~L~i~~v~~~D~G~Y~C~   76 (196)
T 2d3v_A            5 KATLWAEPGS-VISRGNSVTIRCQGTLEAQ-EYRLVKEGSPEPWDTQNP-LEPK-----NKARFSIPSMTEHHAGRYRCY   76 (196)
T ss_dssp             BCEEEEESCS-EEETTCCEEEEEECCTTCC-EEEEEETTCSSCSEEECC-CSST-----TEEEEEESSCCGGGCEEEEEE
T ss_pred             CCEEEeCCCC-cccCCCeEEEEEeCCCCCc-EEEEEECCCCCCcccccc-cCCc-----cccEEEeccCChhHCeEEEEE
Confidence            4666665553 7899999999999998876 899999754332110000 0001     124899999999999999999


Q ss_pred             EeeCCCCc--eeEEEEEEEecC-CCeeEEE---EccccccEeEEEEEeeccCCCccce
Q psy15734        255 AVNALGET--DGFIKVYVNLVD-GDIFQIR---KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       255 a~n~~g~~--~~~~~l~V~~~~-~~~~~~~---~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|..|..  +..+.|.|.... .+.+...   .+..++...+.|.+.+.+ +.+.|.
T Consensus        77 a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~~~v~~G~~v~L~C~~~~~p-~~~~W~  133 (196)
T 2d3v_A           77 YYSPAGWSEPSDPLELVVTGFYNKPTLSALPSPVVTSGENVTLQCGSRLRF-DRFILT  133 (196)
T ss_dssp             EEETTEECBCCCCEEEEEECSSCCCEEEC-----------CEEEEEESSCC-SEEEEE
T ss_pred             EeCCCCcCCcCccEEEEecCCCCCCeEEccCCccccCCCcEEEEEEcCCCC-CEEEEE
Confidence            99987643  456778887643 3333332   234445556999999988 888885

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=99.53  E-value=8e-14  Score=108.18  Aligned_cols=118  Identities=12%  Similarity=0.064  Sum_probs=83.0

Q ss_pred             cceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        184 LEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ...+.+|+.+.|.|.+.+ .|.|.+.|+++ +..+..+.++.+......  ....|.|.++..+|+|.|+|.|.|  |..
T Consensus        11 ~~~v~eg~~v~l~c~~~~~~P~p~i~W~kn-g~~l~~~~~~~~~~~~~~--g~~~L~I~~v~~~D~G~Y~C~a~N--g~a   85 (207)
T 3rbs_A           11 AVEILEKGQVRFWMQAEKLSGNAKVNYIFN-EKEIFEGPKYKMHIDRNT--GIIEMFMEKLQDEDEGTYTFQLQD--GKA   85 (207)
T ss_dssp             EEEECGGGCEEEEEECSCCCSCCEEEEEET-TEEECSSSSCEEEECTTT--CEEEEEESCCCGGGCEEEEEEEEE--TTE
T ss_pred             ceEEEeCCeEEEEEEEecCCCCCEEEEEEC-CEECccCCCEEEEEeCCC--CEEEEEECCCChhhCEEEEEEEEC--CCe
Confidence            467889999999999964 79999999997 555555666655442211  234799999999999999999999  555


Q ss_pred             eeEEEEEEEe-------------------cCCCeeEE---EEccccccEeEEEEEeec-cCCCccce
Q psy15734        263 DGFIKVYVNL-------------------VDGDIFQI---RKMSRLHMGAYLCIASNG-VVPSVSHR  306 (314)
Q Consensus       263 ~~~~~l~V~~-------------------~~~~~~~~---~~~~~~~~g~~~C~a~~~-~~~~~~w~  306 (314)
                      .....+.+..                   ...+.+..   ..+..++...+.|.+.+. |.|.+.|.
T Consensus        86 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~P~~~~~~~~~v~~g~~v~l~C~v~g~~P~p~i~W~  152 (207)
T 3rbs_A           86 TNHSTVVLVGDVFKKLQKEAEFQRQEWIRKQGPHFVEYLSWEVTGECNVLLKCKVANIKKETHIVWY  152 (207)
T ss_dssp             EEEEEEEECTHHHHHHHHHHHHHHHHHHHHTSSEEEEEEEEEEETTTEEEEEEEEESCCTTCEEEEE
T ss_pred             EEEEEEEEEccchhhhcccccccccccccCCCCceEecCCcEEcCCCcEEEEEEEeCCCCCCEEEEE
Confidence            4444432210                   01232221   234455556799999998 89999995

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=99.52  E-value=1.7e-13  Score=105.28  Aligned_cols=110  Identities=13%  Similarity=0.106  Sum_probs=81.1

Q ss_pred             ceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        185 EGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      +.+..|++++|.|.+ +.|.|  .|.|++.+...    .+...  . .   ....|.|.+++.+|+|.|.|.|.|..+..
T Consensus        17 v~v~~G~sv~L~C~a-~~p~P~~~i~W~~~~~~l----~~~~~--~-~---~~~~L~I~~v~~~d~G~Y~C~a~n~~~~~   85 (210)
T 1gsm_A           17 VAVALGASRQLTCRL-ACADRGASVQWRGLDTSL----GAVQS--D-T---GRSVLTVRNASLSAAGTRVCVGSCGGRTF   85 (210)
T ss_dssp             EEEETTCCEEEEEEE-CCSSTTCEEEEESSTTTT----CCEEE--E-S---SEEEEEECSCCGGGCEEEEEEEEETTEEE
T ss_pred             eEEeCCCCEEEEEEC-CCCCCCcceEEeeccccc----CcEEe--c-C---CccEEEECccCcccCceEEEEEEeCCCce
Confidence            688999999999999 99888  99999865332    11111  1 1   13489999999999999999999999888


Q ss_pred             eeEEEEEEEecCCCeeEEE-EccccccEeEEEEEeeccC-C----Cccce
Q psy15734        263 DGFIKVYVNLVDGDIFQIR-KMSRLHMGAYLCIASNGVV-P----SVSHR  306 (314)
Q Consensus       263 ~~~~~l~V~~~~~~~~~~~-~~~~~~~g~~~C~a~~~~~-~----~~~w~  306 (314)
                      .+.+.|.|..+|....... .....+.. ++|.|.+.+| +    +|.|.
T Consensus        86 ~~~~~ltV~~~P~~~~i~~~~~~~g~~~-l~C~a~g~~P~~~~~lti~Wl  134 (210)
T 1gsm_A           86 QHTVQLLVYAFPNQLTVSPAALVPGDPE-VACTAHKVTPVDPNALSFSLL  134 (210)
T ss_dssp             EEEEEEEEEBCCSEEEEESSSBCTTCCE-EEEEEEEEBCCCTTTEEEEEE
T ss_pred             EEEEEEEEEecCCCcEEccceEEeCCce-EEEEeCCCCCCCCCCcEEEEE
Confidence            8899999998764333221 22233445 9999999743 2    57773

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=99.52  E-value=6.7e-15  Score=123.72  Aligned_cols=123  Identities=18%  Similarity=0.166  Sum_probs=96.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe-EEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG-SYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G-~Y~C  253 (314)
                      +|.+...+....+.+|+++.|.|.+.|.|.|.+.|+++++.........       ......+|.|.+++.+|+| .|+|
T Consensus       158 ~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i~W~~~~~~~~~~~~~~-------~~~~~~~L~i~~v~~~D~G~~Y~C  230 (347)
T 2ifg_A          158 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS-------GGLPSLGLTLANVTSDLNRKNVTC  230 (347)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC-------CCSSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCceeccCCceEEeCCCcEEEEEEEecCCCCEEEEEcCCceeecccccc-------eecccceEEEeeCChHHCCCeEEE
Confidence            7888888888899999999999999999999999999865433221111       0112349999999999999 9999


Q ss_pred             EEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccce
Q psy15734        254 VAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      .|.|..|.....+.|.|..+|..  ....+..++...+.|.+.+.|.|.+.|.
T Consensus       231 ~a~n~~g~~~~~~~l~V~~~P~i--~~~~~~~g~~v~l~C~~~g~P~p~i~W~  281 (347)
T 2ifg_A          231 WAENDVGRAEVSVQVNVSFPASV--QLHTAVEMHHWCIPFSVDGQPAPSLRWL  281 (347)
T ss_dssp             CCEETTEECCEEECCCCBEEEEE--EECCCEESSSEEEEEEEEEESCCEEEEE
T ss_pred             EEEcCCCCEEEEEEEEEcCCCee--eeccCccCceEEEEEEeeecCCCcEEEE
Confidence            99999999988888888766432  2333344556679999999999999995

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=1.2e-13  Score=94.03  Aligned_cols=94  Identities=22%  Similarity=0.272  Sum_probs=72.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +.       ..+.++.+..+    +.|.|.+++.+|
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~~~~-~~-------~~~~~~~~~~~----~~L~i~~v~~~d   73 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVISWLKEGFT-FP-------GRDPRATIQEQ----GTLQIKNLRISD   73 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEEEEEESSSE-ES-------SSCSSCEECTT----CCEEEESCCTTT
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEEEEEECCEE-CC-------CCCCCEEEcCC----CEEEEccCCccc
Confidence            4678888889999999999999999999989899999995532 21       12334433322    269999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPP  124 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p  124 (314)
                      +|.|+|.+.|. +.....+.|.|..+|
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~~~~  100 (100)
T 2edj_A           74 TGTYTCVATSSSGETSWSAVLDVTESG  100 (100)
T ss_dssp             CCEEEEEEECSSCCCBCCEEEEEESCC
T ss_pred             CEEEEEEEEcCCCCEEEEEEEEEecCC
Confidence            99999999775 555667778887653

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=99.52  E-value=7.4e-14  Score=103.08  Aligned_cols=104  Identities=18%  Similarity=0.282  Sum_probs=77.4

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+..+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..        +..+.++.+.........|.|.+++.
T Consensus        37 ~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~g-~~--------~~~~~~~~~~~~~~~~~~L~I~~v~~  107 (154)
T 1fhg_A           37 KPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD-NP--------VKESRHFQIDYDEEGNCSLTISEVCG  107 (154)
T ss_dssp             CCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EE--------CCCSSSEEEEECTTCEEEEEESSCCG
T ss_pred             cCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEEEEEECC-EE--------CCCCCcEEEEECCCCeEEEEECCCCh
Confidence            3446788888888999999999999999999888999999954 32        22345565554433445899999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeCCceeee
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVPPRILLD  129 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~  129 (314)
                      +|+|.|+|.+.|. +.....+.|.|..+|.....
T Consensus       108 ~D~G~Y~C~a~N~~G~~~~~~~l~V~~~p~~~~~  141 (154)
T 1fhg_A          108 DDDAKYTCKAVNSLGEATCTAELLVETMGKEGEG  141 (154)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEEECC------
T ss_pred             hcCEEEEEEEEECCCeEEEEEEEEEeCcCcCCCC
Confidence            9999999999775 45566778888888776544

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.52  E-value=3e-14  Score=120.32  Aligned_cols=108  Identities=16%  Similarity=0.204  Sum_probs=70.0

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ++....+.+|+++.|.|.+.| |+|.+.|+++++....... ..++.. .++     +|.|.+++.+|+|.|+|.|.|..
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~~~~~~r~~~-~~~-----~L~I~~v~~~D~G~Y~C~a~N~~  324 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLSQGSNGSVSV-RNG-----DLFFKKVQVEDGGVYTCYAMGET  324 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCSCCSSSSEEE-ETT-----EEEESSCCTTSCEEEEEEEECSS
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEeecccCCceEe-ecC-----eEEEeecCcccCEEEEEEEecCC
Confidence            445678999999999999999 9999999997665443221 112222 555     89999999999999999999999


Q ss_pred             CCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCcc
Q psy15734        260 GETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVS  304 (314)
Q Consensus       260 g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~  304 (314)
                      |.....+.|.|...+         ..++...+.|.|.+.|.|+|.
T Consensus       325 g~~~~~~~l~V~~~~---------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          325 FNETLSVELKVYNFT---------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             CEEEEEEEEEEESSC---------CC-------------------
T ss_pred             CccEEEEEEEEEeee---------ccCCceEEEEEeCCCCCCccc
Confidence            999999998886532         233456799999999999874

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.52  E-value=3.6e-14  Score=97.40  Aligned_cols=92  Identities=16%  Similarity=0.182  Sum_probs=68.0

Q ss_pred             CCeEEcCCCc---ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQL---EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~---~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +|.+...+..   ..+.+|+++.|.|.+.+.|.+ +.|+++ +..+....++.+.....    ...|.|.+++.+|+|.|
T Consensus         7 ~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~-g~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y   80 (104)
T 2e6p_A            7 GPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKD-GQKVEESELLVVKMDGR----KHRLILPEAKVQDSGEF   80 (104)
T ss_dssp             SSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEET-TEECCCBTTBEEEEETT----EEEEEESSCCTTTCEEE
T ss_pred             CCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeC-CEECCCCCCEEEEeCCC----EEEEEECCCChhhCEEE
Confidence            4445444444   678999999999999999999 999997 44444445554432221    34899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEecCCC
Q psy15734        252 RCVAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      +|.|.|..    ..+.|.|..+|.+
T Consensus        81 ~C~a~n~~----~~~~l~V~~~P~p  101 (104)
T 2e6p_A           81 ECRTEGVS----AFFGVTVQDPSGP  101 (104)
T ss_dssp             EEECSSCC----CCEEEEEECCCCS
T ss_pred             EEEECCce----EEEEEEEcCCCCC
Confidence            99999974    3667777776543

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=99.52  E-value=3.2e-14  Score=96.48  Aligned_cols=81  Identities=21%  Similarity=0.346  Sum_probs=64.6

Q ss_pred             CCCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+....+.+|+++.|.|.+. +.|.+.+.|++++..... ..    ....++     +|.|.+++.+|+|.|+|.|.|..
T Consensus        16 ~~~~~~v~~G~~v~l~C~~~~~~p~~~v~W~k~~~~~~~-~~----~~~~~~-----~L~i~~v~~~D~G~Y~C~a~n~~   85 (98)
T 1gl4_B           16 EQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP-SR----AMDFNG-----ILTIRNVQPSDAGTYVCTGSNMF   85 (98)
T ss_dssp             SCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC-TT----EEEETT-----EEEECSCCGGGCEEEEEEEECSS
T ss_pred             CCCCeEEecCCCEEEEEeCCCCCCCcEEEEEeCCCCCCC-ce----eecCCC-----EEEEeCCChhhCEEEEEEecCCC
Confidence            44666889999999999998 689999999996433221 11    112333     89999999999999999999999


Q ss_pred             CCceeEEEEEEE
Q psy15734        260 GETDGFIKVYVN  271 (314)
Q Consensus       260 g~~~~~~~l~V~  271 (314)
                      |.....+.|.|.
T Consensus        86 g~~~~~~~l~V~   97 (98)
T 1gl4_B           86 AMDQGTATLHVQ   97 (98)
T ss_dssp             CEEEEEEEEEEC
T ss_pred             CccccEEEEEEe
Confidence            998888888774

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=99.51  E-value=2.9e-12  Score=96.34  Aligned_cols=117  Identities=21%  Similarity=0.240  Sum_probs=77.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      .|....|.+|+++.|.|.+....+..+.|-..-....       .        ...+.+...|.|.+++. | |.|.|.+
T Consensus         5 ~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~-------~--------~~~~~~~~~l~l~~vs~-~-g~y~C~~   67 (185)
T 1iam_A            5 SPSKVILPRGGSVLVTCSTSCDQPKLLGIETPLPKKE-------L--------LLPGNNRKVYELSNVQE-D-SQPMCYS   67 (185)
T ss_dssp             ESSEEEEETTEEEEEEEEECSSSCSEEEEECSSCEEE-------E--------CSSSSSEEEEEEEEECS-C-BCCEEEE
T ss_pred             ECCCcEEeCCCCEEEEEEccCCCCccceEEeeCCCcc-------E--------eccCCceeEEEEEecCc-C-CEEEEEE
Confidence            4566889999999999999653333466642111100       1        01112223689999983 4 9999999


Q ss_pred             ecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CCC--ceEEEc
Q psy15734        107 NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEP--YVAWRR  161 (314)
Q Consensus       107 ~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p--~~~W~~  161 (314)
                      ... ......+.|.|+.+|...... +....+.+|+.++|.|.+.+. |.+  .|+|++
T Consensus        68 ~c~~~~~~~~~~l~V~~~P~~v~i~-~~~~~~~~G~~~tL~C~v~g~~P~~~l~i~w~k  125 (185)
T 1iam_A           68 NCPDGQSTAKTFLTVYWTPERVELA-PLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLR  125 (185)
T ss_dssp             ECSSCEEEEECEEEEEBCCSEEEEC-CCCSEECTTSEEEEEEEEECCBCGGGEEEEEEE
T ss_pred             ECCCCceEEEEEEEEeCCCCCCEEc-cCCccccCCCcEEEEEEcCCccCCCCcEEEEEe
Confidence            655 344666788998888765554 233447899999999999874 554  378888

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=99.51  E-value=7.2e-14  Score=98.24  Aligned_cols=83  Identities=14%  Similarity=0.089  Sum_probs=64.8

Q ss_pred             ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +...|.|.+.|.|.|.+.|+++ +..+............+.....+.|.|.++..+|+|.|+|.|.|..|....++.|.|
T Consensus        21 ~~~~l~C~~~g~P~p~i~W~k~-g~~l~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~a~N~~G~~~~~~~l~v   99 (118)
T 1wwc_A           21 LEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTINGHF   99 (118)
T ss_dssp             CEEEEEEEEECSSCCEEEEEET-TEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEECC
T ss_pred             cceEEEEEeeeeCCCeEEEEEC-CEECCCCCceeEEEeccCccccEEEEECCCChhcCEEEEEEEECCCCeEeeEEEEEE
Confidence            6678999999999999999997 444444444444333322223459999999999999999999999999999998877


Q ss_pred             EecC
Q psy15734        271 NLVD  274 (314)
Q Consensus       271 ~~~~  274 (314)
                      ...|
T Consensus       100 ~~~P  103 (118)
T 1wwc_A          100 LKEP  103 (118)
T ss_dssp             SCCC
T ss_pred             ccCC
Confidence            7655

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.51  E-value=1.8e-13  Score=93.15  Aligned_cols=90  Identities=12%  Similarity=0.004  Sum_probs=68.8

Q ss_pred             CCeEEcCCCc-ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQL-EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.|...+.. ..+.+|+++.|.|.+. .|.|.+.|++++ ..+....++.+.....    ...|.|.++..+|+|.|+|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g-~~i~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C   80 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNG-QEIRPSTKYIFEHKGC----QRILFINNCQMTDDSEYYV   80 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESS-CBCCCBTTEEEEEETT----EEEEEEEEECTTTCCEEEE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECC-EECCCCCCEEEEecCC----EEEEEEcCCCcCcCEEEEE
Confidence            5666666655 5788999999999999 799999999974 4444445555542221    2489999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecC
Q psy15734        254 VAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      .|    |....++.|.|..+|
T Consensus        81 ~a----g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           81 TA----GDEKCSTELFVRSGP   97 (100)
T ss_dssp             EE----TTEEEEEEEEECCSC
T ss_pred             EE----CCceEEEEEEEecCC
Confidence            99    677788888887654

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.51  E-value=6e-14  Score=96.14  Aligned_cols=91  Identities=12%  Similarity=0.118  Sum_probs=69.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      |+.|..++.+..+.+|+++.|.|.+.+.|. +.+.|+++ +..+....++.+.....    ..+|.|.+++.+|+|.|+|
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~-g~~i~~~~r~~~~~~~~----~~~L~I~~v~~~D~G~Y~C   82 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVG-GKTVGSSSRFQATRQGR----KYILVVREAAPSDAGEVVF   82 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSS-SSBCSBCSSCEEEEETT----EEEEEECSCCTTTCSCEEE
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEEC-CEECCCCCCEEEEEcCC----EEEEEECCCCHHHCEEEEE
Confidence            455666778889999999999999999885 48999997 44444555555543221    2489999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecC
Q psy15734        254 VAVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~  274 (314)
                      .|.|    ...+..|.|..+|
T Consensus        83 ~a~~----~~~~a~L~V~~~p   99 (104)
T 2eny_A           83 SVRG----LTSKASLIVRERS   99 (104)
T ss_dssp             EETT----EEEEECEEEECCC
T ss_pred             EECC----eeEEEEEEEeCCC
Confidence            9844    5678888888765

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=1.8e-14  Score=97.37  Aligned_cols=82  Identities=18%  Similarity=0.261  Sum_probs=63.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+...+....+.+|+++.|.|.+.+.|.|.+.|++++.. +...        .+.     .|.|.++..+|+|.|+|.
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v~W~k~~~~-~~~~--------~~~-----~L~i~~v~~~d~G~Y~C~   75 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQIHWMKDGVP-LPLP--------PSP-----VLILPEIGPQDQGTYSCV   75 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCCCCEESSSB-CSSC--------CCS-----EEEEESCCTTTCEEEECE
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEEEEEECCEE-CcCC--------CCC-----EEEECCCCcccCEEEEEE
Confidence            45566667777899999999999999999999999996443 2221        122     999999999999999999


Q ss_pred             EeeCCCCcee--EEEEEE
Q psy15734        255 AVNALGETDG--FIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~--~~~l~V  270 (314)
                      |.|..+....  .+.|.|
T Consensus        76 a~n~~~~~~~s~~~~v~V   93 (96)
T 2ens_A           76 ATHSSHGPQESRAVSISI   93 (96)
T ss_dssp             ECCSSCCCEECCCEEEEE
T ss_pred             EEeCCCCcEEEEEEEEEE
Confidence            9997665444  444444

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=99.50  E-value=2.8e-14  Score=111.81  Aligned_cols=131  Identities=15%  Similarity=0.101  Sum_probs=80.7

Q ss_pred             CCeEEc-CCCcce-eecCccEEEEEEEeec---CC-ceeEEecCCCeeeecCCceeeeEee-CCeeeEEEEEEeecCCCC
Q psy15734        175 PPMLTI-PNQLEG-AFVSQTVELHCHTEAF---PA-SLNYWTNEKGDMIITGDDYEDSRLI-NGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       175 ~p~~~~-~~~~~~-v~~g~~~~l~C~~~g~---p~-p~~~W~~~~~~~~~~~~~~~~~~~~-~~~~~~s~L~i~~~~~~d  247 (314)
                      +|.+.+ ++.... +.+|+++.|.|.+.|.   |+ +.+.|+++++... ........... +.|...+.|.|.+++.+|
T Consensus         9 ~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~p~~~~v~W~k~~~~~~-~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   87 (218)
T 2rgs_A            9 GPSVFIFPPNIKDVLMISLTPKVTCVVVDVSEDDPDVQISWFVNNVEVH-TAQTQTHREDYNSTIRVVSTLPIQHQDWMS   87 (218)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEECTTSCCEEEEEEETTEEEC-CCEEEEEEETTTTEEEEEEEEECCHHHHHT
T ss_pred             CCEEEEECcCHHHhhccCCCeeEEEEEcCCccCCCceEEEEEECCcccc-CcccccccccCCCeEEEEEEEEEcHHHcCC
Confidence            344433 344333 8899999999999987   44 7999999864322 11111111111 224456789999999999


Q ss_pred             CeEEEEEEeeCCCCc--eeEEEEEEEecCCCeeEEEEcc----ccccEeEEEEEeec-cCC-Cccce
Q psy15734        248 FGSYRCVAVNALGET--DGFIKVYVNLVDGDIFQIRKMS----RLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~--~~~~~l~V~~~~~~~~~~~~~~----~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      +|.|+|.|.|..+..  ...+.+.+.....+.+.+....    .++...+.|.|.++ |++ .++|.
T Consensus        88 ~g~Y~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  154 (218)
T 2rgs_A           88 GKEFKCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGDISVEWT  154 (218)
T ss_dssp             TCCEEEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCeEEEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCCcEEEEE
Confidence            999999999987754  2332211122223334333221    23455799999995 444 78895

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.50  E-value=5.8e-14  Score=97.37  Aligned_cols=98  Identities=19%  Similarity=0.241  Sum_probs=74.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++.. +        ....+............|.|.+++.+|
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~-~--------~~~~~~~~~~~~~~~~~L~i~~v~~~D   77 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDLSWQLDGKP-V--------RPDSAHKMLVRENGVHSLIIEPVTSRD   77 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEEECBBSSSB-C--------CCCSSEEEEECTTSCEEEEESSCCGGG
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEEEEEECCEE-C--------CCCCceEEEEecCCeEEEEEeeCCccc
Confidence            4578999999999999999999999999988899999995432 2        122222222222233489999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.|. +.....+.|.|..+|.
T Consensus        78 ~G~Y~C~a~n~~g~~~~~~~l~V~~~p~  105 (110)
T 2dm3_A           78 AGIYTCIATNRAGQNSFSLELVVAAKES  105 (110)
T ss_dssp             CSBBCEEEECSSCEEEECCEEEEECCCC
T ss_pred             CEEEEEEEECCCCEEEEEEEEEEeCCCC
Confidence            99999999775 4556667788877654

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=99.50  E-value=2.8e-14  Score=114.03  Aligned_cols=128  Identities=14%  Similarity=0.148  Sum_probs=87.8

Q ss_pred             EEcCCCcceeecCccEEEEEEEee---cCCceeEEecCCCee----eecC---------------------Cce--eeeE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEA---FPASLNYWTNEKGDM----IITG---------------------DDY--EDSR  227 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g---~p~p~~~W~~~~~~~----~~~~---------------------~~~--~~~~  227 (314)
                      +..++....+.+|+++.|.|.+.+   .|.+.+.|++++...    +...                     ..+  +...
T Consensus         5 v~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~   84 (250)
T 2fbo_J            5 VRTTHTEVEVHAGGTVELPCSYQLANDTQPPVISWLKGASPDRSTKVFKGNYNWQGEGLGFVESDSYKESFGDFLGRASV   84 (250)
T ss_dssp             EECSCSEEEECTTSCEEECCEEEECSCCSCCEEEEEEEEETTEEEEEEEEEECCCBTTBCCCTTSEEEEECGGGTTTEEC
T ss_pred             EEcCCCceEEecCCeEEEEEEeEcCCCCCceEEEEEeCCCCCccEEEEeeccccccccccccccccccccCCCcCceEEe
Confidence            445667788999999999999998   889999999974321    1100                     000  0001


Q ss_pred             eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-----eeEEEEEEEecCC-CeeEE-----EEccccccEeEEEEEe
Q psy15734        228 LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-----DGFIKVYVNLVDG-DIFQI-----RKMSRLHMGAYLCIAS  296 (314)
Q Consensus       228 ~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~-~~~~~-----~~~~~~~~g~~~C~a~  296 (314)
                      ..+   ....|.|.+++.+|+|.|+|.|.|..+..     ...+.|.|...+. +.+.+     ..+..++...+.|.+.
T Consensus        85 ~~~---~~~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~  161 (250)
T 2fbo_J           85 ANL---AAPTLRLTHVHPQDGGRYWCQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCT  161 (250)
T ss_dssp             SCT---TSCCEEECSCCGGGCEEEEEEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEE
T ss_pred             ccC---CcceEEEeeCChhhCeEEEEEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEec
Confidence            110   01389999999999999999999988754     4477787776532 22322     1223355567999999


Q ss_pred             eccCCCccceEE
Q psy15734        297 NGVVPSVSHRIM  308 (314)
Q Consensus       297 ~~~~~~~~w~v~  308 (314)
                      +.|.|.+.|...
T Consensus       162 g~p~p~v~W~k~  173 (250)
T 2fbo_J          162 DCANANVTWYTG  173 (250)
T ss_dssp             SCTTCEEEEEEE
T ss_pred             CCCCCeeEEEeC
Confidence            999899999654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.49  E-value=5.5e-14  Score=96.83  Aligned_cols=89  Identities=10%  Similarity=0.018  Sum_probs=68.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|..++....+.+|+++.|.|.+.+.|.+ +.|++++ ..+....++.+.....    ...|.|.++..+|+|.|+|.
T Consensus         8 ~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g-~~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   81 (106)
T 2dlt_A            8 QLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNG-VEVRPSKRITISHVGR----FHKLVIDDVRPEDEGDYTFV   81 (106)
T ss_dssp             CCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESS-CBCCCCSSCEEEEETT----EEEEEESSCCTTTCSCEEEE
T ss_pred             CCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCC-EECcCCCCEEEEEeCC----EEEEEECCCCcCCCEEEEEE
Confidence            6778888888999999999999999999988 9999974 4444455555442221    24899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      |.|.  .....+.|.|.
T Consensus        82 a~n~--~~~~~~~l~V~   96 (106)
T 2dlt_A           82 PDGY--ALSLSAKLNFL   96 (106)
T ss_dssp             EETS--CCCCCBCEEEE
T ss_pred             EccC--CceEEEEEEEE
Confidence            9998  34445555554

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=99.49  E-value=1.8e-14  Score=101.22  Aligned_cols=99  Identities=20%  Similarity=0.189  Sum_probs=67.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC--ceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD--DYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~--~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++........  ........++......|.|.+++.+|+|.|+
T Consensus         9 pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~~v~~~D~G~Y~   88 (117)
T 2v9t_A            9 PPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTIEWYKGGERVETDKDDPRSHRMLLPSGSLFFLRIVHGRKSRPDEGVYV   88 (117)
T ss_dssp             EEEEEECCCCEEECTTCCEEECCEEEEESCCEEEEEETTEECCCTTTCSSCSEEECTTSCEEESSCCCBTTBCSSCEEEE
T ss_pred             CCeeEcCCCCEEEcCCCcEEEEEECCccCCCeEEEEECCEeccccCCCCcceeEEecCCcEEEEEEEeCCCCcCcCEEEE
Confidence            67788888888899999999999999999999999997543332211  1112222333111112333366899999999


Q ss_pred             EEEeeCCCCce-eEEEEEEEec
Q psy15734        253 CVAVNALGETD-GFIKVYVNLV  273 (314)
Q Consensus       253 C~a~n~~g~~~-~~~~l~V~~~  273 (314)
                      |.|.|..|... ..+.|.|...
T Consensus        89 C~a~N~~G~~~s~~~~l~~~~~  110 (117)
T 2v9t_A           89 CVARNYLGEAVSHDASLEVAAA  110 (117)
T ss_dssp             EEEEETTEEEECCCEEEEEC--
T ss_pred             EEEEeCccceEeeeEEEEhhhh
Confidence            99999999774 5666666544

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=99.49  E-value=1.6e-13  Score=93.13  Aligned_cols=93  Identities=17%  Similarity=0.307  Sum_probs=67.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++ ..+.       ....++.... ......|.|.+++.+|+
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~~-~~~~-------~~~~~~~~~~-~~~~~~L~i~~~~~~D~   74 (99)
T 1u2h_A            4 APPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVVSWLRNR-QPVR-------PDQRRFAEEA-EGGLCRLRILAAERGDA   74 (99)
T ss_dssp             EEEEEEECCCCEEEETTCCEEEEEEEEEESCCEEEEEETT-EECC-------CBTTEEEEEC-GGGEEEEEESSCCGGGC
T ss_pred             CCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEEEEEECC-EECC-------CCCCEEEEEC-CCCEEEEEEccCCcCCC
Confidence            4678888888999999999999999998888999999954 3221       1122233222 22234799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |.|+|.+.|. +.....+.|.|.
T Consensus        75 G~Y~C~a~N~~g~~~~~~~l~V~   97 (99)
T 1u2h_A           75 GFYTCKAVNEYGARQCEARLEVR   97 (99)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCceeEEEEEEEE
Confidence            9999999775 444455566654

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=99.49  E-value=4.1e-13  Score=92.74  Aligned_cols=96  Identities=21%  Similarity=0.196  Sum_probs=68.4

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCc---eEEEEEEcCceeEEEeeeeeeecCcCEEEEe-----CCceeEEEEE
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLRE---YKVAWVKMITQTILSIHHKVVTQNKRVSITF-----NDHRSWFLHL   91 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~---~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i   91 (314)
                      ..|.|+..|..+.+.+|++++|.|.+.+.|.   +.+.|+|++.. ...     .....++.+..     .....+.|.|
T Consensus         3 p~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~~~~p~v~W~k~~~~-~~~-----~~~~~~~~~~~~~~~~~~~~~~~L~I   76 (108)
T 3cx2_A            3 PIGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWV-DLS-----SKVGQHLQLHDSYDRASKVYLFELHI   76 (108)
T ss_dssp             CCCSCSBCCCCEEEETTCCEEEEEEEECC-CCSCCEEEEEETTTE-EGG-----GGCBTTEEEEEEEETTTTEEEEEEEE
T ss_pred             CccEEEeCCCcEEEeCCCCEEEEEEECCCccCCCcEEEEccCCcc-ccc-----ccCCceEEEeeEEecccccceEEEEE
Confidence            4588888999999999999999999998877   89999995421 100     11122333321     1112458999


Q ss_pred             eeecCCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         92 RDVQETDRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .+++.+|+|.|+|.+.|. +..+..+.|.|.
T Consensus        77 ~~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~  107 (108)
T 3cx2_A           77 TDAQPAFTGSYRCEVSTKDKFDCSNFNLTVH  107 (108)
T ss_dssp             CSCCGGGCEEEEEEEECSSCEEEEEEEEEEE
T ss_pred             ecCCCccCEEEEEEEecCCCceEEEEEEEEe
Confidence            999999999999999875 455566677664

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=99.49  E-value=2.9e-14  Score=110.62  Aligned_cols=127  Identities=12%  Similarity=0.146  Sum_probs=91.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeee---------cCCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII---------TGDDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      ++.+..++....+.+|+++.|.|.+.+.|.+.+.|++++.....         .....+... .+.     .|.|.+++.
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v~W~~~~~~~~~~~~~~~~~~~~~~~r~~~-~~~-----~L~i~~~~~   77 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTF-LPT-----GITFKSVTR   77 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEE-ETT-----EEECSCCCT
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEEEEEEcCCceeEEEEecCccCccccCceEe-ecc-----EEEEeeCCH
Confidence            34567778888999999999999999999999999997554211         011111111 123     899999999


Q ss_pred             CCCeEEEEEEeeCCCC--ceeEEEEEEEecCCCeeEE--EEccccccEeEEEEE-eeccCCCccceE
Q psy15734        246 HQFGSYRCVAVNALGE--TDGFIKVYVNLVDGDIFQI--RKMSRLHMGAYLCIA-SNGVVPSVSHRI  307 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~~~~~~~--~~~~~~~~g~~~C~a-~~~~~~~~~w~v  307 (314)
                      +|+|.|+|.|.|..|.  ....+.|.|..+|......  ..+..++...+.|.+ .+.|.|.+.|..
T Consensus        78 ~d~G~Y~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v~W~~  144 (209)
T 1nbq_A           78 EDTGTYTCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFK  144 (209)
T ss_dssp             TSCSEEEEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEE
T ss_pred             HHCcEEEEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCceeEEEE
Confidence            9999999999998663  4567778887765433221  123445556799997 888889999953

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=99.49  E-value=2e-13  Score=92.63  Aligned_cols=93  Identities=17%  Similarity=0.301  Sum_probs=70.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..        +..+.++.+..++. ...|.|.+++.+|
T Consensus         4 ~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v~W~~~g-~~--------~~~~~~~~~~~~~~-~~~L~i~~~~~~d   73 (99)
T 3puc_A            4 SSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTAIWTKDG-KA--------ITQGGKYKLSEDKG-GFFLEIHKTDTSD   73 (99)
T ss_dssp             CEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEEEEEETT-EE--------CCSSSSEEEEEETT-EEEEEECSCCGGG
T ss_pred             CCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEEEEEECC-EE--------CcCCCCEEEEEeCC-EEEEEECCCCccc
Confidence            34678888889999999999999999998888999999954 32        22345665554432 3379999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEE
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      +|.|+|.+.|. +.....+.|.|.
T Consensus        74 ~G~Y~C~a~n~~g~~~~~~~l~V~   97 (99)
T 3puc_A           74 SGLYTCTVKNSAGSVSSSCKLTIK   97 (99)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEeCCCcEeEEEEEEEE
Confidence            99999999775 444555556654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=99.49  E-value=3.6e-13  Score=105.27  Aligned_cols=126  Identities=16%  Similarity=0.176  Sum_probs=84.3

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeec-CCceeEEecCC---Cee-eec-C------------CceeeeEeeCCeeeEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEK---GDM-IIT-G------------DDYEDSRLINGYSCHMT  237 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~---~~~-~~~-~------------~~~~~~~~~~~~~~~s~  237 (314)
                      +.+..++ ...+.+|+++.|.|.+.+. |.+.+.|++.+   ... +.. .            .++.+.. .   ....+
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~---~~~~~   76 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTIEWYQQQPLKPPKYVMELKKDGSHSTGDGIPDRFSGSS-S---GADRY   76 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCEEEEEECTTSCCEEEEEECTTSCEEECSSCCTTEEEEE-E---TTEEE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEEEEEEECCCCCeEEEEEEcccCccccCCCcccceEEec-C---CceEE
Confidence            4566667 7889999999999999999 99999999832   111 100 0            1222211 1   12348


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCC-----CceeEEEEEEEecC--CCeeEEEEc----cccccEeEEEEEeec-cCC-Ccc
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALG-----ETDGFIKVYVNLVD--GDIFQIRKM----SRLHMGAYLCIASNG-VVP-SVS  304 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~--~~~~~~~~~----~~~~~g~~~C~a~~~-~~~-~~~  304 (314)
                      |.|.+++.+|+|.|+|.|.|..|     .....+.|.|...+  .+.+.+...    ...+...+.|.+.+. |+| .+.
T Consensus        77 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~~~v~  156 (218)
T 3s96_B           77 LSISNIQPEDEAIYICGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSGVTVA  156 (218)
T ss_dssp             EEESSCCGGGCEEEEEEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEE
T ss_pred             EEEccCCcccCEEEEEEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCCeEEE
Confidence            99999999999999999999876     33445677777543  233333211    122446799999984 555 788


Q ss_pred             ce
Q psy15734        305 HR  306 (314)
Q Consensus       305 w~  306 (314)
                      |.
T Consensus       157 W~  158 (218)
T 3s96_B          157 WK  158 (218)
T ss_dssp             EE
T ss_pred             EE
Confidence            95

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.49  E-value=5.5e-14  Score=98.36  Aligned_cols=98  Identities=17%  Similarity=0.199  Sum_probs=73.4

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      ++.|...+..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+        ..+.++.+.........|.|.+++.+|+|
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~g-~~l--------~~~~~~~~~~~~~~~~~L~I~~v~~~D~G   83 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLDK-TPL--------HANELNEIDAQPGGYHVLTLRQLALKDSG   83 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEESS-CEE--------CCSSSCCBCCBTTTBCCBEECSCCTTTCE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEECC-EEC--------CCCCcEEEEEcCCCEEEEEEcCCChhhCE
Confidence            457888899999999999999999999888899999954 332        22333333322222337999999999999


Q ss_pred             EEEEEEecCCCcceeEEEEEEeCCceeeec
Q psy15734        101 WYMCQINTVPMTSQKGYLQVVVPPRILLDR  130 (314)
Q Consensus       101 ~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~~  130 (314)
                      .|+|.+   +.....+.|.|..+|.+...+
T Consensus        84 ~Y~C~~---g~~~~~~~L~V~~~p~~~~~~  110 (115)
T 2cr6_A           84 TIYFEA---GDQRASAALRVTEKPSVFSRS  110 (115)
T ss_dssp             EEEEEE---TTEECCEEEEEECCSSCCSSS
T ss_pred             EEEEEE---CCeeEEEEEEEECCCceeccC
Confidence            999995   345566789999888766544

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.49  E-value=2.6e-13  Score=91.36  Aligned_cols=86  Identities=16%  Similarity=0.181  Sum_probs=66.5

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +.|...+....+.+|+++.|.|.+ +.|.+.+.|+++ +..+....++.+.....    ...|.|.+++.+|+|.|+|.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~-~~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a   82 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRG-GSDISASNKYGLATEGT----RHTLTVREVGPADQGSYAVIA   82 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECS-SSEECSSTTCEEEEETT----EEEEEESSCCTTCCSEEEEEE
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEEC-CEECCCCCcEEEEEcCC----EEEEEEcCCCcccCEEEEEEE
Confidence            455566777889999999999999 889999999997 44454555555543222    248999999999999999999


Q ss_pred             eeCCCCceeEEEEEEE
Q psy15734        256 VNALGETDGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~  271 (314)
                          |.....+.|.|.
T Consensus        83 ----g~~~~~~~l~V~   94 (95)
T 2k1m_A           83 ----GSSKVKFDLKVI   94 (95)
T ss_dssp             ----TTEEEEEEEEEE
T ss_pred             ----CCceEEEEEEEe
Confidence                566677777775

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=2.5e-14  Score=97.59  Aligned_cols=89  Identities=16%  Similarity=0.269  Sum_probs=66.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC----ceeeeEeeCCeeeEEEEEEeecCCCCCeE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD----DYEDSRLINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                      ||.|..++....+.+|+++.|.|.+.+.| +.+.|++++.. +....    ++.+.  .++  ....|.|.++..+|+|.
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~~-i~~~~~~~~~~~~~--~~~--~~~~L~I~~~~~~D~G~   81 (101)
T 2edk_A            8 PVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGVE-LTREDSFKARYRFK--KDG--KRHILIFSDVVQEDRGR   81 (101)
T ss_dssp             CCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSCB-CCCSCCSSCCCEEE--ECS--SEEEEECSSCCGGGCSB
T ss_pred             CCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCEE-CCCCCCcceeEEEE--ECC--CEEEEEECCCChhhCEE
Confidence            56777777888999999999999999999 99999997543 43333    33443  222  13489999999999999


Q ss_pred             EEEEEeeCCCCceeEEEEEEEec
Q psy15734        251 YRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      |+|.|.|    ......|.|..+
T Consensus        82 Y~C~a~n----~~~~~~l~V~~~  100 (101)
T 2edk_A           82 YQVITNG----GQCEAELIVEEK  100 (101)
T ss_dssp             EEEECSS----CEECCBEEEECC
T ss_pred             EEEEEcC----CcEEEEEEEeCC
Confidence            9999987    344555666554

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=99.48  E-value=6.1e-14  Score=105.39  Aligned_cols=112  Identities=15%  Similarity=0.159  Sum_probs=80.2

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeec-CCc------e--eeeEe-eCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT-GDD------Y--EDSRL-INGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~-~~~------~--~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .+.+.+|++++|.|.+.+ |.+.+.|++++..+..- ...      +  ++... .++     +|.|.+++.+|+|.|+|
T Consensus         4 ~v~~~~G~~VtL~c~~~~-~~~~i~W~~~~~~i~~~~~~~~~~~~~~~~R~~~~~~~~-----sL~I~~v~~~DsG~Y~C   77 (171)
T 1ccz_A            4 QIYGVVYGNVTFHVPSNV-PLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSG-----SLTIYNLTSSDEDEYEM   77 (171)
T ss_dssp             EEEEETTCCEEECCCCSS-CCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECTTTC-----CEEECSCCGGGCEEEEE
T ss_pred             EEEEEcCCCEEEcCCCCC-CcceEEEEeCCcEEEEEcCCCcccccccCCcEEEeCCCC-----eEEECCCChhhCceEEE
Confidence            356789999999999854 88999999975432211 100      1  11111 233     89999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccce
Q psy15734        254 VAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      .|.|..|  ...+.|.|..++..+........   +.++|.+.+.+.|.++|.
T Consensus        78 ~~~n~~~--~~~~~L~V~~~~~~p~i~~~~~~---~~L~C~~~~~p~p~i~W~  125 (171)
T 1ccz_A           78 ESPNITD--TMKFFLYVLEMVSKPMIYWECSN---ATLTCEVLEGTDVELKLY  125 (171)
T ss_dssp             ECTTCCS--CEEEEEEEECCCCCCEEEEETTT---TEEEEECSSCSSCEEEEE
T ss_pred             EEeCCCC--cEEEEEEEECcCCCCEEEEecCC---cEEEEEeCCCCCcEEEEE
Confidence            9999887  67888888876543333222222   479999999888999995

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=99.48  E-value=1.5e-13  Score=105.49  Aligned_cols=122  Identities=11%  Similarity=0.065  Sum_probs=83.1

Q ss_pred             CCCcceeecCccEEEEEEEee-cCCceeEEecCCCeee-ec-CC-----------ce--eeeEeeCCeeeEEEEEEeecC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMI-IT-GD-----------DY--EDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~-~~-~~-----------~~--~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      .+..+.+.+|++++|.|.+.+ .+.+.+.|++++..+. .. ..           .+  +.....++     +|.|.+++
T Consensus         4 ~p~~v~~~~G~~v~L~C~~~~~~~~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~-----sL~I~~v~   78 (193)
T 2if7_A            4 TPLMVNGILGESVTLPLEFPAGEKVNFITWLFNETSLAFIVPHETKSPEIHVTNPKQGKRLNFTQSY-----SLQLSNLK   78 (193)
T ss_dssp             CCEEEEEETTSCEEECCCCCCCSCCCEEEEEETTEEEEEEECCSSSCCEEEECCHHHHTTEEECTTC-----CEEECSCC
T ss_pred             CCeEEEEEecCeEEEeccCCCcccccEEEEEECCEEEEEEecccCCCCceeecCccccccEEECCCe-----EEEECCCC
Confidence            455677899999999999976 4557999999743221 11 00           00  11122233     89999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEc---cccc-cEeEEEEEeec-cCCCccceE
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKM---SRLH-MGAYLCIASNG-VVPSVSHRI  307 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~---~~~~-~g~~~C~a~~~-~~~~~~w~v  307 (314)
                      .+|+|.|+|.|.|..+.....+.|.|...+..+......   ..+. ...++|.|.+. +.|.++|..
T Consensus        79 ~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~~~~g~~~v~L~C~~~g~~p~p~i~W~~  146 (193)
T 2if7_A           79 MEDTGSYRAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQLFQNMTCELHLTCSVEDADDNVSFRWEA  146 (193)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEEECCCEEEEEEECCC---CSSEEEEEEEEEESCCTTCEEEEEE
T ss_pred             cccCceEEEEEEecCCCeEEEEEEEEEccCCCCeEecCceeecCCCceEEEEEEEecCCCceEEEEEe
Confidence            999999999999998877778888887654332222111   1122 45799999995 478999963

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=99.48  E-value=1.8e-13  Score=94.53  Aligned_cols=98  Identities=16%  Similarity=0.335  Sum_probs=64.5

Q ss_pred             ccCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         16 CEKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        16 ~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +.+..+|.|...+....+.+|+++.|.|.+.+.+.+.+.|++++.. +        ..+.++.+....   +.|.|.+++
T Consensus         5 v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i~W~~~~~~-~--------~~~~~~~~~~~~---~~L~i~~v~   72 (108)
T 3kvq_A            5 VLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQIMWFKDNET-L--------VEDSGIVLKDGN---RNLTIRRVR   72 (108)
T ss_dssp             ------CCCBSCCCCEEEETTCCEEEECBCC----CCEEEEESSSB-C--------CCBTTEEEETTT---TEEEECSCC
T ss_pred             ECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeEEEEECCeE-c--------ccCCCeEEeCCC---cEEEEeecC
Confidence            3445688998889999999999999999999888889999996543 1        222333332221   379999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      .+|+|.|+|.+.|. +.....+.|.|..+|.
T Consensus        73 ~~D~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  103 (108)
T 3kvq_A           73 KEDEGLYTCQACSVLGCAKVEAFFIIEGAQE  103 (108)
T ss_dssp             GGGCEEEEEEEC----CEEEEEEEEEEC---
T ss_pred             cccCEEEEEEEEeCCCceEEEEEEEEeCCCc
Confidence            99999999999765 5566677788877654

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.48  E-value=4.2e-14  Score=96.09  Aligned_cols=84  Identities=12%  Similarity=0.181  Sum_probs=66.0

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ++....+.+|+++.|.|.+.|.| |.+.|++++. .+....++.+.   +.     .|.|.++..+|+|.|+|.|.|..|
T Consensus         9 ~p~~~~v~~G~~v~L~C~~~g~p-p~i~W~k~g~-~~~~~~~~~~~---~~-----~L~i~~v~~~D~G~Y~C~a~n~~g   78 (99)
T 2cr3_A            9 EVESFLVHPGDLLQLRCRLRDDV-QSINWLRDGV-QLAESNRTRIT---GE-----EVEVQDSVPADSGLYACVTSSPSG   78 (99)
T ss_dssp             CEEECCBCTTSCEEEECCCCSSC-CEEEEEESSS-BCCCCSSEEEC---SS-----EEEETTCCTTTCEEEEEEEEETTE
T ss_pred             CCcCeEEeCCCcEEEEEEecCCC-CeEEEEECCE-ECCCCCcEEEE---CC-----EEEEccCCHHHCEEEEEEEEeCCc
Confidence            34556788999999999999987 7999999753 33333333322   33     999999999999999999999999


Q ss_pred             CceeEEEEEEEecC
Q psy15734        261 ETDGFIKVYVNLVD  274 (314)
Q Consensus       261 ~~~~~~~l~V~~~~  274 (314)
                      .....+.|.|...+
T Consensus        79 ~~~~~~~l~V~~~~   92 (99)
T 2cr3_A           79 SDTTYFSVNVSDAL   92 (99)
T ss_dssp             EEEEEEEECBCSCC
T ss_pred             eEEEEEEEEEecCC
Confidence            88888888776543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=99.48  E-value=8.4e-14  Score=110.54  Aligned_cols=130  Identities=8%  Similarity=0.002  Sum_probs=82.8

Q ss_pred             eEEcCCCcce-eecCccEEEEEEEeec---CCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        177 MLTIPNQLEG-AFVSQTVELHCHTEAF---PAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       177 ~~~~~~~~~~-v~~g~~~~l~C~~~g~---p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ++..++.... +.+|++++|.|.+.|.   |.+ .+.|+++++...............+.|...+.|.|.+++.+|+|.|
T Consensus        18 v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~s~L~I~~~~~~D~g~Y   97 (239)
T 1i1c_A           18 VFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHTAQTHAPEKQSNSTLRSVSELPIVERDWLNGKTF   97 (239)
T ss_dssp             EEEECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCE
T ss_pred             EEEECCChHHhcccCCcEEEEEEEecCccCCCCCEEEEEECCccccCcccccceEcCCCcEEEEEEEEEEhhHccCCCeE
Confidence            3344555555 7899999999999987   776 8999998654331111111111223366677999999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEE--EecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        252 RCVAVNALGETDGFIKVYV--NLVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V--~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      +|.|.|..+.......+..  .....+.+.+....    .+....+.|.|.+++++  .+.|.
T Consensus        98 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~~~~v~W~  160 (239)
T 1i1c_A           98 KCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPPDIYTEWK  160 (239)
T ss_dssp             EEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECCCeEEEEE
Confidence            9999999886533222211  12222334433221    12345799999997655  67885

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.48  E-value=5.2e-13  Score=91.34  Aligned_cols=91  Identities=18%  Similarity=0.245  Sum_probs=68.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCc--CEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK--RVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ++.|..++..+.+.+|+++.|.|.+.+ +.+.+.|++++ ..+        ..+.  ++.+..++. ...|.|.+++.+|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g-~~l--------~~~~~~~~~~~~~~~-~~~L~I~~~~~~D   75 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNG-EEI--------IPGPKSRYRIRVEGK-KHILIIEGATKAD   75 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCCEEEETT-EEC--------CCSTTCSEEEEEETT-EEEEEEEEECTTT
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeEEEEECC-EEC--------CCCCceEEEEEEcCC-EEEEEECCCCccc
Confidence            344788888999999999999999987 66899999954 322        2233  445554432 3479999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.|   ....+.|.|..+|.
T Consensus        76 ~G~Y~C~a~n---~~~~~~l~V~~~p~   99 (103)
T 1x44_A           76 AAEYSVMTTG---GQSSAKLSVDLKSG   99 (103)
T ss_dssp             CSEEEEEETT---EEEEEEEEEECCCS
T ss_pred             CEEEEEEECC---CcEEEEEEEeCCCC
Confidence            9999999965   45667788877653

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=99.47  E-value=7.2e-13  Score=90.09  Aligned_cols=91  Identities=16%  Similarity=0.157  Sum_probs=69.6

Q ss_pred             CCCceecCCcc-eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         20 DMPRFAEPVAN-VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        20 ~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .+|.|..++.. +.+.+|+++.|.|.+. .+.+.+.|++++.. +        ..+.++.+..++.. ..|.|.+++.+|
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v~W~k~g~~-i--------~~~~~~~~~~~~~~-~~L~I~~~~~~D   74 (100)
T 2yuv_A            6 SGAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEVKWYKNGQE-I--------RPSTKYIFEHKGCQ-RILFINNCQMTD   74 (100)
T ss_dssp             SSCCEEECCCSCEEECTTEEEEEEEEES-CTTSCEEEEESSCB-C--------CCBTTEEEEEETTE-EEEEEEEECTTT
T ss_pred             CCCeEEecCCCccEEcCCCcEEEEEEec-CCCceEEEEECCEE-C--------CCCCCEEEEecCCE-EEEEEcCCCcCc
Confidence            47888887776 6889999999999998 58889999995532 2        23345655544332 379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCC
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPP  124 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p  124 (314)
                      +|.|+|.+   +.....+.|.|..+|
T Consensus        75 ~G~Y~C~a---g~~~~~~~l~V~~~P   97 (100)
T 2yuv_A           75 DSEYYVTA---GDEKCSTELFVRSGP   97 (100)
T ss_dssp             CCEEEEEE---TTEEEEEEEEECCSC
T ss_pred             CEEEEEEE---CCceEEEEEEEecCC
Confidence            99999999   445666778887766

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=99.47  E-value=1.9e-13  Score=105.47  Aligned_cols=118  Identities=15%  Similarity=0.153  Sum_probs=81.3

Q ss_pred             ceeecCccEEEEEEEe----ecCCceeEEecCCCeeeecC-----------CceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        185 EGAFVSQTVELHCHTE----AFPASLNYWTNEKGDMIITG-----------DDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~----g~p~p~~~W~~~~~~~~~~~-----------~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      +.+.+|+++.|.|.+.    +.|.+.+.|++++.......           .+..+....+.     +|.|.+++.+|+|
T Consensus         4 v~v~~G~~v~L~C~~~~~~~~~~~~~~~W~~~~~~i~~~~~~~~~~~~~~~~r~~~~~~~~~-----~L~I~~v~~~D~G   78 (201)
T 1dr9_A            4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITNNL-----SIVILALRPSDEG   78 (201)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTTTT-----EEEECSCCGGGCE
T ss_pred             EEEEeCCCEEEecccCCCcccccccEEEEEeCCcEEEEEeCCceeecCcccceeEEccCCCc-----EEEEecccchhCe
Confidence            5688999999999995    45778999999754332110           11111111223     8999999999999


Q ss_pred             EEEEEEeeCCCCce-----eEEEEEEEecCC-CeeEEEEccccccEeEEEEEe-eccCCCccceE
Q psy15734        250 SYRCVAVNALGETD-----GFIKVYVNLVDG-DIFQIRKMSRLHMGAYLCIAS-NGVVPSVSHRI  307 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~-----~~~~l~V~~~~~-~~~~~~~~~~~~~g~~~C~a~-~~~~~~~~w~v  307 (314)
                      .|+|.|.|..|...     ..+.|.|...+. +.+.+.....++...+.|.+. +.|.|.+.|..
T Consensus        79 ~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~~~~g~~~~l~C~~~~g~P~p~i~W~k  143 (201)
T 1dr9_A           79 TYECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFEIPTSNIRRIICSTSGGFPEPHLSWLE  143 (201)
T ss_dssp             EEEEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEECSSTTEEEEEEEEEEESSCEEEEEEE
T ss_pred             EEEEEEEcCCCCccccccccEEEEEEcCCCCCCceEeccCCCCCeEEEEEecCCccCCCEEEEEE
Confidence            99999999887653     466677766433 333333334444557999995 88999999953

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.47  E-value=1.1e-13  Score=94.66  Aligned_cols=92  Identities=17%  Similarity=0.355  Sum_probs=71.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.+.|.+ +.|++++ ..+....++.+..  ++  ....|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~-~~l~~~~~~~~~~--~~--~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2e7b_A            8 PVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGN-NVLRPGDKYSLRQ--EG--AMLELVVRNLRPQDSGRYSCS   81 (103)
T ss_dssp             CCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESS-SBCCCSSSEEEEE--CS--SEEEEEECSCCTTTCCCEEEE
T ss_pred             CCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECC-EECCCCCcEEEEE--cC--CEEEEEEccCCcccCEEEEEE
Confidence            6677777788899999999999999999999 9999964 4444445554432  22  134799999999999999998


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                          .|.....+.|.|..+|..
T Consensus        82 ----~g~~~~~~~l~V~~~p~~   99 (103)
T 2e7b_A           82 ----FGDQTTSATLTVTALPSG   99 (103)
T ss_dssp             ----CSSCBCCBCEEEECCCCC
T ss_pred             ----ECCcEEEEEEEEEecccc
Confidence                566777888888877643

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=2.4e-13  Score=93.04  Aligned_cols=93  Identities=16%  Similarity=0.333  Sum_probs=72.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+.+ +.+.+.|++++. .+        ..+.++.+..++. ...|.|.+++.+|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v~W~k~g~-~~--------~~~~~~~~~~~~~-~~~L~I~~v~~~D   74 (103)
T 2edf_A            6 SGPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPVHWLKDRK-AI--------RKSQKYDVVCEGT-MAMLVIRGASLKD   74 (103)
T ss_dssp             CCCCCEEECCCCEEECTTSCEEECCEESS-SSCCCCEEESSC-BC--------CCSSSEEEEEETT-EEEEEESSCCTTT
T ss_pred             CCCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcEEEEECCE-Ec--------cCCCCEEEEECCC-EEEEEECCCCccc
Confidence            46788888899999999999999999987 777899999543 22        2344555554433 3379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.|   ....+.|.|..+|.
T Consensus        75 ~G~Y~C~a~n---~~~~~~l~V~~~p~   98 (103)
T 2edf_A           75 AGEYTCEVEA---SKSTASLHVEEKAS   98 (103)
T ss_dssp             CSEEEEECSS---CEEEEEEEECCCSS
T ss_pred             CEEEEEEEcc---CCcEEEEEEeCCCC
Confidence            9999999976   45667788877664

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.47  E-value=8e-13  Score=92.06  Aligned_cols=92  Identities=24%  Similarity=0.341  Sum_probs=70.9

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|..++....+.+|+++.|.|.+.+.  +.+.|++++..         +..+.++.+..++. ...|.|.+++.+|+
T Consensus        18 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~---------l~~~~~~~~~~~~~-~~~L~I~~v~~~D~   85 (113)
T 2edh_A           18 LPIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGHET---------LRDGDRHSLRQDGA-RCELQIRGLVAEDA   85 (113)
T ss_dssp             SCCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESSSB---------CCCSSSEEEEEETT-EEEEEECSCCSTTC
T ss_pred             CCCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECCEE---------CCCCCcEEEEECCC-EEEEEECCCChhhC
Confidence            45688888889999999999999999774  68999995532         22345666655433 33799999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEEeCCce
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVVVPPRI  126 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~~~p~~  126 (314)
                      |.|+|.+   +.....+.|.|..+|..
T Consensus        86 G~Y~C~a---~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           86 GEYLCMC---GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             EEEEEEE---TTEEEEEEEEECCCCCS
T ss_pred             EEEEEEe---CCCCEEEEEEEeCCCCC
Confidence            9999999   45566778888776643

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=99.47  E-value=2e-13  Score=106.86  Aligned_cols=124  Identities=10%  Similarity=0.057  Sum_probs=83.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEE--EEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHM--TLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s--~L~i~~~~~~d~G~Y~  252 (314)
                      +|.|...+. ..+.+|++++|.|.+.+ +.+.+.|+|++............  ..    ...  .|.|.+++.+|+|.|+
T Consensus         9 ~P~i~~~p~-~~v~~G~~vtL~C~~~~-~~~~~~W~k~g~~~~~~~~~~~~--~~----~~~~~~L~I~~v~~~D~G~Y~   80 (218)
T 1uct_A            9 MPFISAKSS-PVIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIGRRLK--FW----NETDPEFVIDHMDANKAGRYQ   80 (218)
T ss_dssp             CCCEEESSC-SEEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECSEECC----------CCCEEEECSCCGGGCEEEE
T ss_pred             CCEEEecCC-CccCCCCCEEEEEEcCC-CCCEEEEEECCCcccccccccCC--CC----cceeeEEEEcccccccCEEEE
Confidence            566666555 47899999999999987 68899999975443322111000  00    113  8999999999999999


Q ss_pred             EEEeeCCCCc--eeEEEEEEEecC-CCeeEEE---EccccccEeEEEEEeeccCCCccce
Q psy15734        253 CVAVNALGET--DGFIKVYVNLVD-GDIFQIR---KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       253 C~a~n~~g~~--~~~~~l~V~~~~-~~~~~~~---~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|.|..|..  +..+.|.|.... .+.+...   .+..++...+.|.+.+.+++.+.|.
T Consensus        81 C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~~v~~G~~v~L~C~~~~~~~~~~~W~  140 (218)
T 1uct_A           81 CQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGLVLMPGENISLTCSSAHIPFDRFSLA  140 (218)
T ss_dssp             EEEEETTTEEEECCCEEEEEECSSCCCEEEESSCSEECTTCCCEEEEECSSSCCSEEEEE
T ss_pred             EEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCCccCCCCCEEEEEeCCCCCCCEEEEE
Confidence            9999987633  345677776532 3444332   2345555679997777777788884

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=99.47  E-value=1.5e-13  Score=108.36  Aligned_cols=121  Identities=12%  Similarity=0.123  Sum_probs=87.8

Q ss_pred             CCCcceeecCccEEEEEEEeecCC-ceeEEecCCCe----eee----cCCce--eee----------EeeCCeeeEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGD----MII----TGDDY--EDS----------RLINGYSCHMTLK  239 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~----~~~----~~~~~--~~~----------~~~~~~~~~s~L~  239 (314)
                      .+....+.+|+++.|.|.+.+.|. +.+.|++++..    .+.    ....+  ++.          ...++     .|.
T Consensus         6 ~p~~~~v~~G~~v~L~C~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~~-----~L~   80 (231)
T 2pet_A            6 VPPLVEVMRGKSVILDCTPTGTHDHYMLEWFLTDRSGARPRLASAEMQGSELQVTMHDTRGRSPPYQLDSQG-----RLV   80 (231)
T ss_dssp             CCSEEEEETTCCEEECCCCBSCCSEEEEEEEEECTTCCCCEEEEEEEETTEEEEEECCCSCCSSCCEECTTC-----CEE
T ss_pred             CCCcEEEEcCCCEEEecccCCCCCceEEEEEEeCCCceeEEEEeccccCCccccccccccccccccccCCCc-----eEE
Confidence            456678999999999999999995 89999986433    111    11111  111          22223     599


Q ss_pred             EeecCCCCCeEEEEEEeeCC-CCceeEEEEEEEecCCCeeEEEEc-----cccccE-eEEEEE-eeccCCCccce
Q psy15734        240 IRSILSHQFGSYRCVAVNAL-GETDGFIKVYVNLVDGDIFQIRKM-----SRLHMG-AYLCIA-SNGVVPSVSHR  306 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~-g~~~~~~~l~V~~~~~~~~~~~~~-----~~~~~g-~~~C~a-~~~~~~~~~w~  306 (314)
                      |.+++.+|+|.|+|.|.|.. +.....+.|.|...+..+......     ..++.. .+.|.+ .+.|.|.+.|.
T Consensus        81 i~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i~W~  155 (231)
T 2pet_A           81 LAEAQVGDERDYVCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKITWY  155 (231)
T ss_dssp             ESSCCGGGCEEEEEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEEEEE
T ss_pred             EcccCcccCceEEEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEEEEE
Confidence            99999999999999999987 777888999998876654433222     233333 799999 88999999996

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.47  E-value=2.5e-13  Score=88.80  Aligned_cols=82  Identities=21%  Similarity=0.313  Sum_probs=61.5

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ...+.+.+|+++.|.|.+.+ |.+.+.|+|++ ..+        ..+.++.+..++.. ..|.|.+++.+|+|.|+|.+.
T Consensus         3 lt~v~~~~G~~v~l~C~vs~-p~p~v~W~k~g-~~l--------~~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y~C~a~   71 (84)
T 2lu7_A            3 MTRVRSTPGGDLELVVHLSG-PGGPVRWYKDG-ERL--------ASQGRVQLEQAGAR-QVLRVQGARSGDAGEYLCDAP   71 (84)
T ss_dssp             CCCEEECTTSCEEEECCCSC-CSTTCEEEETT-EEC--------CCCSSEEEEECSSC-EEEEESSCSSTTCEEEEEECT
T ss_pred             CeEEEEecCCCEEEEEEECC-CCcEEEEEECC-EEc--------cccccEEEeecCCe-EEEEecCCCCcccEEEEEEEC
Confidence            45788999999999999976 77889999954 432        33456666555433 379999999999999999984


Q ss_pred             cCCCcceeEEEEEEeC
Q psy15734        108 TVPMTSQKGYLQVVVP  123 (314)
Q Consensus       108 ~~~~~~~~~~l~v~~~  123 (314)
                      +   ....+.|.|.+|
T Consensus        72 n---~~~~a~l~V~eP   84 (84)
T 2lu7_A           72 Q---DSRIFLVSVEEP   84 (84)
T ss_dssp             T---TCEEEEEEECCC
T ss_pred             C---EEEEEEEEEECC
Confidence            4   355666777543

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=99.47  E-value=4.3e-13  Score=96.91  Aligned_cols=89  Identities=19%  Similarity=0.204  Sum_probs=66.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeec---------CCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIIT---------GDDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      ||.|...+....+.+|+++.|.|.+.|.|.|.+.|++++......         ..++.+..... ....++|.|.+++.
T Consensus        21 pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~I~~v~~   99 (137)
T 3qr2_A           21 MAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEIQWWFEGQGPNDICSQLWDGARLDRVHIHATYH-QHAASTISIDTLVE   99 (137)
T ss_dssp             CCEEEECCCCEEEETTSCEEEEEEEECSSCCEEEEEEEESSTTCCCEECCTTHHHHTEEEEEEES-SSEEEEEEECSCCG
T ss_pred             CCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeEEEEECCCCccccceeecccCcccceEEecccc-cccceEEEECCCCc
Confidence            888888888899999999999999999999999999964432111         11111111111 11235999999999


Q ss_pred             CCCeEEEEEEeeCCCCcee
Q psy15734        246 HQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~  264 (314)
                      +|+|.|+|.|.|..|....
T Consensus       100 ~D~G~Y~C~a~N~~G~~~~  118 (137)
T 3qr2_A          100 EDTGTYECRASNDPDRNHL  118 (137)
T ss_dssp             GGCEEEEEEEECCTTSSSC
T ss_pred             ccCEEEEEEEEecCCccce
Confidence            9999999999999998643

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.47  E-value=2e-13  Score=93.57  Aligned_cols=94  Identities=16%  Similarity=0.220  Sum_probs=71.3

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..+|.|..++..+.+.+|++++|.|.+.+.+. +.+.|++++. .        +..+.++.+..++. ..+|.|.+++.+
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~~~v~W~k~g~-~--------i~~~~r~~~~~~~~-~~~L~I~~v~~~   75 (104)
T 2eny_A            6 SGHVGITKRLKTMEVLEGESCSFECVLSHESASDPAMWTVGGK-T--------VGSSSRFQATRQGR-KYILVVREAAPS   75 (104)
T ss_dssp             CCCCCCSBCCCCEEEESSCCEEEEEECSSCCCSSCBCCBSSSS-B--------CSBCSSCEEEEETT-EEEEEECSCCTT
T ss_pred             cCCCEEEecCCCcEEcCCCcEEEEEEEcCCCCCceeEEEECCE-E--------CCCCCCEEEEEcCC-EEEEEECCCCHH
Confidence            34567888899999999999999999988664 4799999543 2        22344666554433 237999999999


Q ss_pred             CCeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         98 DRGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        98 d~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      |+|.|+|.+.+   ....+.|.|..+|.
T Consensus        76 D~G~Y~C~a~~---~~~~a~L~V~~~p~  100 (104)
T 2eny_A           76 DAGEVVFSVRG---LTSKASLIVRERSG  100 (104)
T ss_dssp             TCSCEEEEETT---EEEEECEEEECCCS
T ss_pred             HCEEEEEEECC---eeEEEEEEEeCCCc
Confidence            99999999843   45667788887764

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=99.47  E-value=5.4e-13  Score=92.93  Aligned_cols=91  Identities=20%  Similarity=0.269  Sum_probs=70.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.+.  |.+.|++++ ..+....++.+.....    ...|.|.++..+|+|.|+|.
T Consensus        19 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~-~~l~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   91 (113)
T 2edh_A           19 PIKFTEGLRNEEATEGATAVLRCELSKM--APVEWWKGH-ETLRDGDRHSLRQDGA----RCELQIRGLVAEDAGEYLCM   91 (113)
T ss_dssp             CCCEEECCCCCEECTTSCEEEEEEESSC--CCCEEEESS-SBCCCSSSEEEEEETT----EEEEEECSCCSTTCEEEEEE
T ss_pred             CCcccccCCceEEeCCCeEEEEEEECCC--CcEEEEECC-EECCCCCcEEEEECCC----EEEEEECCCChhhCEEEEEE
Confidence            5677777778899999999999999775  789999974 4444455555443221    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |    |.....+.|.|..+|..
T Consensus        92 a----~~~~~~~~l~V~~~p~~  109 (113)
T 2edh_A           92 C----GKERTSAMLTVRAMPSG  109 (113)
T ss_dssp             E----TTEEEEEEEEECCCCCS
T ss_pred             e----CCCCEEEEEEEeCCCCC
Confidence            9    77788888888877643

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=99.46  E-value=5.4e-13  Score=103.90  Aligned_cols=127  Identities=17%  Similarity=0.169  Sum_probs=84.2

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---Cee-eec---------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---GDM-IIT---------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~~~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +.+..++....+.+|+++.|.|.+.+.|.+.+.|++.+   ... +..         ..++.... ..   ...+|.|.+
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~   77 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYLNWYQQKPGKAPKLLIYYTNKLADGVPSRFSGSG-SG---RDSSFTISS   77 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEESS
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceEEEEEECCCCCcEEEEEEcCcCCCCCCCcEEEec-cC---CEEEEEECC
Confidence            45666677888999999999999999999999999832   111 111         12332221 11   235899999


Q ss_pred             cCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec-CCCeeEEEEc----cccccEeEEEEEeeccCC--Cccce
Q psy15734        243 ILSHQFGSYRCVAVNALGET-DGFIKVYVNLV-DGDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~-~~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      ++.+|+|.|+|.|.|..+.. .....|.|... ..+.+.+...    ..+....+.|.+.+.+++  .+.|.
T Consensus        78 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~~~~v~W~  149 (213)
T 3r06_A           78 LESEDIGSYYCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPKDINVKWK  149 (213)
T ss_dssp             CCGGGCSEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCEEEEEE
T ss_pred             CCcccCEEEEEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCCceEEEEE
Confidence            99999999999999876532 34455666332 2233333221    123346799999997754  78885

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=99.46  E-value=1.4e-13  Score=107.09  Aligned_cols=128  Identities=13%  Similarity=0.083  Sum_probs=88.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC----CceeEEecCCC---------------eeeec-----CCceeeeEee-CCe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP----ASLNYWTNEKG---------------DMIIT-----GDDYEDSRLI-NGY  232 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~~~W~~~~~---------------~~~~~-----~~~~~~~~~~-~~~  232 (314)
                      +..++....+.+|+++.|.|.+.+.|    .+.+.|++.+.               .....     ..+..  ... +..
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~--~~~~~~~   80 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPSDNQIVDQVIILYSGDKIYDNYYPDLKGRVH--FTSNDVK   80 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTCCSCCEEEEEEEESSSSCCSEEEEEEETTEEECCCCGGGTTTEE--ESCSCGG
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCCCCcEEEEEEecCCCCCCCceEEEEEeCCeEccccCCccccceE--EeccCcc
Confidence            34455667899999999999999987    46999998421               11110     11111  111 000


Q ss_pred             eeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEE--ccccccEeEEEEE-eeccCCCccceE
Q psy15734        233 SCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRK--MSRLHMGAYLCIA-SNGVVPSVSHRI  307 (314)
Q Consensus       233 ~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~--~~~~~~g~~~C~a-~~~~~~~~~w~v  307 (314)
                      ....+|.|.+++.+|+|.|+|.|.|..|.....+.|.|...|........  +..++...+.|.+ .+.|.|.+.|..
T Consensus        81 ~~~~~L~i~~v~~~D~G~Y~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v~W~~  158 (214)
T 3jz7_A           81 SGDASINVTNLQLSDIGTYQCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQFEWQK  158 (214)
T ss_dssp             GTBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEEEEEE
T ss_pred             CCcccEEEccCChhhCeEEEEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEEEEEE
Confidence            01238999999999999999999999998889999999887654443322  3334445799999 889999999964

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.46  E-value=6.3e-13  Score=93.34  Aligned_cols=97  Identities=16%  Similarity=0.207  Sum_probs=71.8

Q ss_pred             cCCCCCceec---CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEee
Q psy15734         17 EKPDMPRFAE---PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        17 ~~~~~p~~~~---~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+..+|.|..   .+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+        . ..++.+...+ ....|.|.+
T Consensus        17 ~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~g-~~l--------~-~~~~~~~~~~-~~~~L~i~~   85 (118)
T 2e7c_A           17 EIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQVVWTKGG-APL--------D-TSRVHVRTSD-FDTVFFVRQ   85 (118)
T ss_dssp             CCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEEEEEETT-EEC--------C-CSSCEEEECS-SEEEEEESS
T ss_pred             eeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEEEEEECC-EEC--------C-CCcEEEEECC-CeEEEEECC
Confidence            3345677754   357889999999999999999999999999954 322        1 2344443322 234799999


Q ss_pred             ecCCCCeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734         94 VQETDRGWYMCQINTV-PMTSQKGYLQVVVPP  124 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p  124 (314)
                      ++.+|+|.|+|.+.|. +.....+.|.|..+|
T Consensus        86 ~~~~D~G~Y~C~a~N~~G~~~~~~~l~V~~~P  117 (118)
T 2e7c_A           86 AARSDSGEYELSVQIENMKDTATIRIRVVEKA  117 (118)
T ss_dssp             CCTTTCEEEEEEEECSSCEECCEEEEEEECCC
T ss_pred             CChhcCEEEEEEEEeCCCeEEEEEEEEEEcCC
Confidence            9999999999999775 555666778887765

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=99.46  E-value=5e-13  Score=104.11  Aligned_cols=125  Identities=21%  Similarity=0.241  Sum_probs=83.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-eee---e------c---CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-DMI---I------T---GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~~---~------~---~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +..++....+.+|+++.|.|.+.+.|.+.+.|++++. ..+   .      .   ..++.... ..   ...+|.|.+++
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v~   79 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SG---TDFTLSINSVE   79 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ET---TEEEEEESSCC
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCEEEEEeCCCCCcEEEEEEcccccccccccEEEEc-CC---CEEEEEECCCC
Confidence            4556777889999999999999999999999997532 111   0      0   12332222 11   13489999999


Q ss_pred             CCCCeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEEc----cccccEeEEEEEeec-cCC-Cccce
Q psy15734        245 SHQFGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRKM----SRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~~----~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      .+|+|.|+|.|.|..+.. .....|.|.... .+.+.+...    ..++...+.|.+.+. |++ .+.|.
T Consensus        80 ~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~~~v~W~  149 (213)
T 3d9a_L           80 TEDFGMYFCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWK  149 (213)
T ss_dssp             GGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             hhhCEEEEEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCceEEEEE
Confidence            999999999999987753 233466665533 333433221    123456799999984 444 68885

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=99.46  E-value=1.3e-13  Score=94.82  Aligned_cols=95  Identities=16%  Similarity=0.210  Sum_probs=73.1

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .....|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++..         +..+.++.+.... ..+.|.|.+++.
T Consensus        10 ~~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v~W~k~g~~---------l~~~~~~~~~~~~-~~~~L~I~~v~~   79 (106)
T 1nct_A           10 KTTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV---------LSTSARHQVTTTK-YKSTFEISSVQA   79 (106)
T ss_dssp             CSSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBCCBCSSSSC---------CTTCSSEEEEECS-SEEEEEECCCCS
T ss_pred             CCCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEEEEEECCEE---------CCCCCCEEEEECC-CEEEEEECcCCc
Confidence            345678999999999999999999999999988899999995532         2234555555432 234899999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      +|+|.|+|.+.|. +.....+.|.|.
T Consensus        80 ~D~G~Y~C~a~N~~G~~~~~~~l~V~  105 (106)
T 1nct_A           80 SDEGNYSVVVENSEGKQEAEFTLTIQ  105 (106)
T ss_dssp             SCCSEEEECCBCSSCBCCEEEEEEEC
T ss_pred             hhCEEEEEEEEeCCCeEEEEEEEEEE
Confidence            9999999999765 445555666653

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=99.46  E-value=2.5e-13  Score=91.11  Aligned_cols=89  Identities=8%  Similarity=0.085  Sum_probs=65.0

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|..++..+.+.+|+.+.|.|.+.+.|.+.+.|++++ +..+.        .+  ...... .....|.|.+++.+|+
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i~W~k~~~~~~~~--------~~--~~~~~~-~~~~~L~i~~~~~~D~   70 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALA--------PE--LLVDAK-SSTTSIFFPSAKRADS   70 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEEEEECSTTTCBCS--------TT--SEEEEE-TTEEEEECTTBCGGGC
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEEEEEECCCCcccC--------Cc--EEEEec-CCEEEEEECCCChhcC
Confidence            588888888999999999999999999999999999965 13221        11  111111 1224799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      |.|+|.+.|. +.....+.|.|
T Consensus        71 G~Y~C~a~N~~G~~~~~~~l~V   92 (93)
T 1wit_A           71 GNYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEcCCCeEEEEEEEEE
Confidence            9999999875 33344444544

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.46  E-value=1.2e-12  Score=104.09  Aligned_cols=130  Identities=15%  Similarity=0.176  Sum_probs=84.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.. .+.+|++++|.|.+.+ +.+.+.|+|++............ ..     ....|.|.+++.+|+|.|+|.
T Consensus         7 kP~i~~~P~~-~v~~G~~VtL~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~-~~-----~~~~L~I~~v~~~DsG~Y~C~   78 (242)
T 1p6f_A            7 KPFIWAEPHF-MVPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDRPKPPE-RI-----NKVKFYIPDMNSRMAGQYSCI   78 (242)
T ss_dssp             CCEEEEESCS-EEETTCCEEEEEECCT-TCCEEEEEETTEEEEEECCSSCT-TC-----CEEEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEeeCCC-ccCCCCcEEEEEeeCC-CCcEEEEEECCCccccccccccC-Cc-----ceeEEEecCCCcccCeEEEEE
Confidence            5666665555 7899999999999975 45688999975433221111000 01     123899999999999999999


Q ss_pred             EeeCCCC--ceeEEEEEEEe-------------------------------------c-------------CCCeeEEEE
Q psy15734        255 AVNALGE--TDGFIKVYVNL-------------------------------------V-------------DGDIFQIRK  282 (314)
Q Consensus       255 a~n~~g~--~~~~~~l~V~~-------------------------------------~-------------~~~~~~~~~  282 (314)
                      +.|..+.  .+..+.|.|..                                     +             ....|.|..
T Consensus        79 ~~~~~~~s~~S~~~~L~V~~~~~~P~i~~~p~~~v~~G~~vtL~C~~~~~~~~~~w~k~g~~~~~~~~~~~~~~~l~I~~  158 (242)
T 1p6f_A           79 YRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGPEVISGEKVTFYCRLDTATSMFLLLKEGRSSHVQRGYGKVQAEFPLGP  158 (242)
T ss_dssp             EEETTEECCCCCCEEEEEECCSCCCEEEEESCSEEETTCEEEEEEECTTSCSEEEEEECSSSCEEEEEECSSEEEEEEEE
T ss_pred             EecCCccccCCcceEEEeecccCCCceEccCCCccCCCCcEEEEEecCCCCCEEEEEECCCccCccccCCCceEEEEeCC
Confidence            9886432  23344444421                                     0             112356677


Q ss_pred             ccccccEeEEEEEeecc--CCCccceEEEEEE
Q psy15734        283 MSRLHMGAYLCIASNGV--VPSVSHRIMVTVH  312 (314)
Q Consensus       283 ~~~~~~g~~~C~a~~~~--~~~~~w~v~l~v~  312 (314)
                      +...|.|.|+|.|.+..  ....+-.+.|.|.
T Consensus       159 v~~~d~G~Y~C~a~n~~~~~s~~S~~~~l~V~  190 (242)
T 1p6f_A          159 VTTAHRGTYRCFGSYNNHAWSFPSEPVKLLVT  190 (242)
T ss_dssp             CCGGGCEEEEEEEEEETTEECCCCCCEEEEEE
T ss_pred             CccccCEEEEEEEECCCCcccCCCCCEEEEEe
Confidence            88888899999998763  2344556777765

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.46  E-value=4.3e-13  Score=94.05  Aligned_cols=96  Identities=17%  Similarity=0.186  Sum_probs=68.7

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCC---CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC-----CceeEEEEEe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENL---REYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-----DHRSWFLHLR   92 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~L~i~   92 (314)
                      -|.|+..|..+.+.+|++++|.|.+.+.   +.+.|.|||+....+.      .....++.+...     ....+.|+|.
T Consensus         7 ~~~F~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~   80 (126)
T 2dav_A            7 GILFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA------SKAGKHLQLKETFERHSRVYTFEMQII   80 (126)
T ss_dssp             SCSCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHH------HHTTSSEEEEEEEETTTTEEEEEEEEC
T ss_pred             ccEEEEcCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCcCcccC------CCCCceEEEccccccccccceEEEEEc
Confidence            3678888999999999999999999764   7899999994211000      001223333210     1123589999


Q ss_pred             eecCCCCeEEEEEEecC-CCcceeEEEEEEe
Q psy15734         93 DVQETDRGWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      +++.+|+|.|+|.+.+. +..+..+.|.|.+
T Consensus        81 ~v~~~DaG~Y~Cevsn~~g~~~~~~~L~V~~  111 (126)
T 2dav_A           81 KAKDNFAGNYRCEVTYKDKFDSCSFDLEVHE  111 (126)
T ss_dssp             SCCTTSCEEEEEEEECSSCEEEECCEEEEEC
T ss_pred             cCCcccCEEEEEEEEeCCCcEEEEEEEEEEe
Confidence            99999999999999775 4556778899988

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.46  E-value=5.1e-13  Score=91.40  Aligned_cols=92  Identities=14%  Similarity=0.171  Sum_probs=71.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+++.|.|. .+.|.|.+.|++++ ..+....++.+.. .+   ....|.|.++..+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~-~~~p~~~v~W~k~~-~~l~~~~~~~~~~-~~---~~~~L~I~~v~~~D~G~Y~C~   81 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCK-TEHPAATVTWRKGL-LELRASGKHQPSQ-EG---LTLRLTISALEKADSDTYTCD   81 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEE-CSSCCSCCEEEESS-CBCCSSSSEEEEE-ET---TEEEEEEESCCTTTCSEEEEE
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEE-eCCCCCeEEEEeCC-EECCCCCeEEEEe-CC---CEEEEEECCCCcccCEEEEEE
Confidence            667777778889999999999999 48999999999974 4444445555432 12   134899999999999999998


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                          .|.....+.|.|...+.+
T Consensus        82 ----~g~~~~~~~l~V~~~p~~   99 (103)
T 2dku_A           82 ----IGQAQSRAQLLVQGRRSG   99 (103)
T ss_dssp             ----CSSCBCCEEEEEECSCCC
T ss_pred             ----eCCceEEEEEEEeCccCC
Confidence                677778888988877644

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=99.45  E-value=8.9e-13  Score=90.15  Aligned_cols=93  Identities=20%  Similarity=0.349  Sum_probs=72.0

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+.+.+.+ +.|++++..         ...+.++.+..++. ...|.|.+++.+|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~~~~---------l~~~~~~~~~~~~~-~~~L~I~~v~~~D   74 (103)
T 2e7b_A            6 SGPVRFQEALKDLEVLEGGAATLRCVLSSVAAP-VKWCYGNNV---------LRPGDKYSLRQEGA-MLELVVRNLRPQD   74 (103)
T ss_dssp             CCCCCCTBCCCCEEEESSSCEEEEEECSSCCCS-CEEEESSSB---------CCCSSSEEEEECSS-EEEEEECSCCTTT
T ss_pred             CCCCEEEecCccEEEECCCcEEEEEEEeCCCCC-eEEEECCEE---------CCCCCcEEEEEcCC-EEEEEEccCCccc
Confidence            467888888999999999999999999988877 999995432         22344666655432 3479999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+   +.....+.|.|..+|.
T Consensus        75 ~G~Y~C~~---g~~~~~~~l~V~~~p~   98 (103)
T 2e7b_A           75 SGRYSCSF---GDQTTSATLTVTALPS   98 (103)
T ss_dssp             CCCEEEEC---SSCBCCBCEEEECCCC
T ss_pred             CEEEEEEE---CCcEEEEEEEEEeccc
Confidence            99999984   3455567788887764

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=99.45  E-value=7.1e-13  Score=103.05  Aligned_cols=125  Identities=17%  Similarity=0.153  Sum_probs=82.9

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-ee---eec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-DM---IIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~---~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+.. +....+.+|+++.|.|.+.+.|.+.+.|++++. ..   +..         ..++.... ..   ....|.|.++
T Consensus         3 ~v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v   77 (210)
T 1lk3_L            3 VLTQ-PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSG-SG---TDFTLTIDPV   77 (210)
T ss_dssp             CEEC-CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEESSC
T ss_pred             cEEC-CCcEEEcCCCCEEEEeeCCCccCCCEEEEEECCCCCeEEEEEccccccCCccccEEEEe-cC---CEEEEEECCC
Confidence            3445 677889999999999999999999999998431 11   110         12222221 11   2348999999


Q ss_pred             CCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEE----ccccccEeEEEEEeeccCC--Cccce
Q psy15734        244 LSHQFGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRK----MSRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~----~~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      +.+|+|.|+|.|.|..+.. .....|.|.... .+.+.+..    ...++...++|.+.+.+++  .+.|.
T Consensus        78 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  148 (210)
T 1lk3_L           78 EADDTAIYFCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYPRDISVKWK  148 (210)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CHHHCeEEEEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeCCceEEEEE
Confidence            9999999999999987643 233456665432 24444322    1234456799999985543  68885

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.45  E-value=4.9e-13  Score=91.65  Aligned_cols=92  Identities=17%  Similarity=0.253  Sum_probs=68.3

Q ss_pred             CCCceecCCcc---eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         20 DMPRFAEPVAN---VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        20 ~~p~~~~~~~~---~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+|.++..+..   +.+.+|+++.|.|.+.+.+.+ +.|++++ ..+        ..+.++.+...+. ...|.|.+++.
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~-v~W~k~g-~~~--------~~~~~~~~~~~~~-~~~L~I~~~~~   74 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP-ATWYKDG-QKV--------EESELLVVKMDGR-KHRLILPEAKV   74 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC-CEEEETT-EEC--------CCBTTBEEEEETT-EEEEEESSCCT
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc-cEEeeCC-EEC--------CCCCCEEEEeCCC-EEEEEECCCCh
Confidence            46777766666   899999999999999988877 9999954 322        2234555443332 23799999999


Q ss_pred             CCCeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         97 TDRGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|+|.|+|.+.|.   ...+.|.|.++|.
T Consensus        75 ~D~G~Y~C~a~n~---~~~~~l~V~~~P~  100 (104)
T 2e6p_A           75 QDSGEFECRTEGV---SAFFGVTVQDPSG  100 (104)
T ss_dssp             TTCEEEEEECSSC---CCCEEEEEECCCC
T ss_pred             hhCEEEEEEECCc---eEEEEEEEcCCCC
Confidence            9999999999764   3466788877664

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=99.45  E-value=1.2e-12  Score=102.43  Aligned_cols=123  Identities=12%  Similarity=0.134  Sum_probs=80.6

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCC-Ceeee-----------------cCCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDMII-----------------TGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~~~-----------------~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|+++.|.|.+.+.|  .+.+.|++++ +..+.                 ...++.+.....  ....+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~   84 (219)
T 1c1e_H            7 SGPELKKPGETVKISCKASGYMFTNYGMNWVKQAPGKALKLMGWINPYTGESTFADDFKGRFAFFLETS--ATTAYLQIN   84 (219)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECSSSCCEEECGGGCSSEEEEEEGG--GTEEEEEEC
T ss_pred             CCCeEecCCCcEEEEEEEeCcccccceEEEEEeCCCCCcEEEEEEecCCCceEeCcccCCcEEEEEecC--CCEEEEEEC
Confidence            4456789999999999999875  6899999864 22110                 012222221110  113589999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCc----eeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEee-ccCC-Cccce
Q psy15734        242 SILSHQFGSYRCVAVNALGET----DGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASN-GVVP-SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~-~~~~-~~~w~  306 (314)
                      +++.+|+|.|+|.|.|..+..    ...+.|.|...+  .+.+....    +..++...+.|.+.+ .|.| .++|.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  161 (219)
T 1c1e_H           85 NLKNEDMATYFCARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  161 (219)
T ss_dssp             SCCGGGCEEEEEEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCCcccCEEEEEEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEEEEE
Confidence            999999999999999987421    234566666532  23333221    233445579999999 7888 89995

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=99.45  E-value=5.5e-13  Score=91.72  Aligned_cols=91  Identities=20%  Similarity=0.283  Sum_probs=69.6

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+.+.+.+ +.|++++.. +        ..+.++.+..++. ...|.|.+++.+|
T Consensus         6 ~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~-v~W~k~g~~-~--------~~~~~~~~~~~~~-~~~L~I~~v~~~D   74 (106)
T 2dlt_A            6 SGQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT-GKWYKNGVE-V--------RPSKRITISHVGR-FHKLVIDDVRPED   74 (106)
T ss_dssp             CCCCCEEECCCCEEEESSCCEECCCEESCSSCE-EEEEESSCB-C--------CCCSSCEEEEETT-EEEEEESSCCTTT
T ss_pred             CCCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc-eEEEcCCEE-C--------cCCCCEEEEEeCC-EEEEEECCCCcCC
Confidence            467889999999999999999999999887776 999995532 2        2344555554332 2379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEE
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      +|.|+|.+.|. .....+.|.|.
T Consensus        75 ~G~Y~C~a~n~-~~~~~~~l~V~   96 (106)
T 2dlt_A           75 EGDYTFVPDGY-ALSLSAKLNFL   96 (106)
T ss_dssp             CSCEEEEEETS-CCCCCBCEEEE
T ss_pred             CEEEEEEEccC-CceEEEEEEEE
Confidence            99999999876 44455566665

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=99.45  E-value=5.3e-13  Score=103.81  Aligned_cols=123  Identities=15%  Similarity=0.202  Sum_probs=82.4

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce-e-ee---------cCCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD-M-II---------TGDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~-~-~~---------~~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+..++ ...+.+|+++.|.|.+.  |.+.+.|++.+  .. . +.         ...++.... ..   ...+|.|.++
T Consensus         3 ~v~~~~-~~~v~~G~~v~L~C~~~--~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v   75 (211)
T 3tv3_L            3 ALTQPP-SASGSPGQSITISCTGT--SNNFVSWYQQHAGKAPKLVIYDVNKRPSGVPDRFSGSK-SG---NTASLTVSGL   75 (211)
T ss_dssp             CCBCCS-EEEECTTCEEEEEEECC--CSSCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE-ET---TEEEEEEESC
T ss_pred             eEEeCc-eEEEcCCCCEEEEEEEC--CCCeEEEEEECCCCCCEEEEEEecccCCCCcCcEEEEc-cC---CEEEEEECCC
Confidence            344555 77899999999999999  88999999842  11 1 11         112333222 11   2348999999


Q ss_pred             CCCCCeEEEEEEeeCCC--CceeEEEEEEEecC--CCeeEEEEc----cccccEeEEEEEeeccC--CCccce
Q psy15734        244 LSHQFGSYRCVAVNALG--ETDGFIKVYVNLVD--GDIFQIRKM----SRLHMGAYLCIASNGVV--PSVSHR  306 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g--~~~~~~~l~V~~~~--~~~~~~~~~----~~~~~g~~~C~a~~~~~--~~~~w~  306 (314)
                      +.+|+|.|+|.|.|..+  .....+.|.|...+  .+.+.+...    ..++...+.|.+.+.++  +.+.|.
T Consensus        76 ~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~W~  148 (211)
T 3tv3_L           76 QTDDEAVYYCGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYPGAVTVAWK  148 (211)
T ss_dssp             CGGGCEEEEEEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBSSCCEEEEE
T ss_pred             ChhHCEEEEEEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecCCCeEEEEE
Confidence            99999999999999887  34556677776322  233433221    13455679999999654  577885

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=99.45  E-value=5.1e-13  Score=88.80  Aligned_cols=78  Identities=21%  Similarity=0.293  Sum_probs=57.9

Q ss_pred             CCCceecCCcceEE--EcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         20 DMPRFAEPVANVTA--TVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        20 ~~p~~~~~~~~~~v--~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      .||.|+.+++.+.+  .+|+++.|.|.+.+ +.+.+.|+|++. .        +..+.++.+..++.. ..|.|.+++.+
T Consensus         3 ~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v~W~k~g~-~--------i~~~~~~~i~~~~~~-~~L~I~~v~~~   71 (91)
T 2lvc_A            3 MPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPVRWYKDGQ-E--------VEESDFVVLENEGPH-RRLVLPATQPS   71 (91)
T ss_dssp             CCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCCEEEETTS-C--------CCCCSSCEEEEETTE-EEEEESSCCGG
T ss_pred             CCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEEEEEECCE-E--------eeeeeeeeEEecCCe-EEEEeCCCChh
Confidence            35667777766544  58999999999966 777899999553 3        233456665554433 37999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|+|.+.|
T Consensus        72 D~G~Y~C~a~n   82 (91)
T 2lvc_A           72 DGGEFQCVAGD   82 (91)
T ss_dssp             GCSEEEEECSS
T ss_pred             hcEEEEEEEcc
Confidence            99999999854

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=99.45  E-value=3e-13  Score=93.91  Aligned_cols=95  Identities=15%  Similarity=0.255  Sum_probs=67.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecC--CceeEEecCCCeeeecCCc---eeeeEeeC-CeeeEEEEEEeecCCCCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKGDMIITGDD---YEDSRLIN-GYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~~~~~~~~~---~~~~~~~~-~~~~~s~L~i~~~~~~d~  248 (314)
                      +|.|...+....+.+|+++.|.|.+.+.|  .+.+.|++++.. +.....   .+.....+ .....+.|.|.++..+|+
T Consensus        10 ~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~i~W~k~~~~-~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   88 (112)
T 3so5_A           10 XPQITVQPETQSAIXGSDVSFTCSAASSSDSPMTFAWXXDNEA-LQDAEMENYAHLRAQGGELMEYTTILRLRNVEFTSE   88 (112)
T ss_dssp             SCEEEECCCCEEECTTCCEEEEEEEEESCCCCCEEEEEETTEE-CTTCEEEEEEETTGGGSSCEEEEEEEEECSCCGGGC
T ss_pred             CCeEEeCCCCcEEECCCCEEEEEEEecCCCCCEEEEEccCCcc-cccccccceeeeeccCCCccccceEEEEeccccccC
Confidence            56777777777899999999999999654  589999997533 222110   01100000 111235999999999999


Q ss_pred             eEEEEEEeeCCCC-ceeEEEEEE
Q psy15734        249 GSYRCVAVNALGE-TDGFIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g~-~~~~~~l~V  270 (314)
                      |.|+|.|.|..|. .+..+.|.|
T Consensus        89 G~Y~C~a~n~~g~~~s~~~~l~V  111 (112)
T 3so5_A           89 GXYQCVISNHFGSSYSVXAXLTI  111 (112)
T ss_dssp             EEEEEEEEETTEEEECCCEEEEE
T ss_pred             CeEEEEEEeCCCcEEEeEEEEEe
Confidence            9999999999997 457777765

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.6e-13  Score=93.63  Aligned_cols=92  Identities=22%  Similarity=0.253  Sum_probs=68.7

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCc----CEEEEeCCceeEEEEEeee
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK----RVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~----~~~~~~~~~~~~~L~i~~~   94 (314)
                      ..+|.|..++..+.+.+|+++.|.|.+.+.+ +.+.|++++. .+.        .+.    ++.+..++. ...|.|.++
T Consensus         6 ~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v~W~k~g~-~i~--------~~~~~~~~~~~~~~~~-~~~L~I~~~   74 (101)
T 2edk_A            6 SGPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQVMWMKNGV-ELT--------REDSFKARYRFKKDGK-RHILIFSDV   74 (101)
T ss_dssp             CCCCCEEECCCCEEEESSCCCBCCEEESCSS-CCCEEEESSC-BCC--------CSCCSSCCCEEEECSS-EEEEECSSC
T ss_pred             cCCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEEEEEECCE-ECC--------CCCCcceeEEEEECCC-EEEEEECCC
Confidence            4568888889999999999999999998877 8999999553 221        122    445554432 347999999


Q ss_pred             cCCCCeEEEEEEecCCCcceeEEEEEEeCC
Q psy15734         95 QETDRGWYMCQINTVPMTSQKGYLQVVVPP  124 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p  124 (314)
                      +.+|+|.|+|.+.+   ......|.|..+|
T Consensus        75 ~~~D~G~Y~C~a~n---~~~~~~l~V~~~P  101 (101)
T 2edk_A           75 VQEDRGRYQVITNG---GQCEAELIVEEKQ  101 (101)
T ss_dssp             CGGGCSBEEEECSS---CEECCBEEEECCC
T ss_pred             ChhhCEEEEEEEcC---CcEEEEEEEeCCC
Confidence            99999999999965   3344566666554

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=99.45  E-value=1.3e-13  Score=112.59  Aligned_cols=107  Identities=14%  Similarity=0.076  Sum_probs=70.5

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc-e
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET-D  263 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~-~  263 (314)
                      ..+.+|+++.|.|.+. .|.|.+.|++.+...... .    ......     .+.    ..+|+|.|+|.|.|..+.. +
T Consensus       105 ~~v~~G~~v~l~C~~~-~p~~~v~w~~~~~~~~~~-~----~~~~~~-----~~~----~~~d~G~Y~C~a~n~~~~~~s  169 (289)
T 3mjg_X          105 IFLTEITEITIPCRVT-DPQLVVTLHEKKGDVALP-V----PYDHQR-----GFS----GIFEDRSYICKTTIGDREVDS  169 (289)
T ss_dssp             EEESSCCCEEECCCBS-CTTSCEEEEESSCCSCCC-C----CEETTT-----EEE----ECCCSSEEEEEEEETTEEEEC
T ss_pred             EEeecCCeEEEEeEcC-CCCceEEEEeCCCCCccc-e----eecCCc-----Cee----eeccCcEEEEEEEeCCceeee
Confidence            4578899999999999 788889888864222211 0    001111     111    3579999999999877654 3


Q ss_pred             eEEEEEEEecCCCeeEEE----EccccccEeEEEEEeeccCCCccce
Q psy15734        264 GFIKVYVNLVDGDIFQIR----KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       264 ~~~~l~V~~~~~~~~~~~----~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      ..+.|.|.....+.+.+.    .+..++...+.|.+.+.|.|.+.|.
T Consensus       170 ~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v~W~  216 (289)
T 3mjg_X          170 DAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNFEWT  216 (289)
T ss_dssp             CCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEEEEE
T ss_pred             eeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcceEEE
Confidence            445666665333334333    2334555679999999999999997

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.45  E-value=1.4e-13  Score=96.21  Aligned_cols=92  Identities=11%  Similarity=0.052  Sum_probs=71.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ++.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....++   ...|.|.++..+|+|.|+|.
T Consensus        13 p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~   88 (115)
T 2cr6_A           13 RVHIIEDLEDVDVQEGSSATFRCRISPANYEPVHWFLD-KTPLHANELNEIDAQPGG---YHVLTLRQLALKDSGTIYFE   88 (115)
T ss_dssp             CCEEEECCCEEEEETTSCEECCCEEESTTCCSCEEEES-SCEECCSSSCCBCCBTTT---BCCBEECSCCTTTCEEEEEE
T ss_pred             CCeEeccCccEEEeCCCcEEEEEEEcCCCCCccEEEEC-CEECCCCCcEEEEEcCCC---EEEEEEcCCChhhCEEEEEE
Confidence            44666777888999999999999999999999999997 444444545444322121   23899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecC
Q psy15734        255 AVNALGETDGFIKVYVNLVD  274 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~  274 (314)
                      +    |.....+.|.|..+|
T Consensus        89 ~----g~~~~~~~L~V~~~p  104 (115)
T 2cr6_A           89 A----GDQRASAALRVTEKP  104 (115)
T ss_dssp             E----TTEECCEEEEEECCS
T ss_pred             E----CCeeEEEEEEEECCC
Confidence            4    667777888888765

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.45  E-value=8.1e-13  Score=104.92  Aligned_cols=127  Identities=15%  Similarity=0.146  Sum_probs=87.1

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecC----CceeEEecCCC-e---eeec---------CCceeeeEeeCCeeeEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFP----ASLNYWTNEKG-D---MIIT---------GDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p----~p~~~W~~~~~-~---~~~~---------~~~~~~~~~~~~~~~~s~L~  239 (314)
                      .+..++....+.+|+++.|.|.+.+.|    .+.+.|++++. .   .+..         ..++.+.. ..   ...+|.
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~   78 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTG-SR---TDFTLI   78 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCCEETTEECEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEEEE
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCccccCCCceEEEEEECCCCCceEEEEEecccCcCCCccEEEEe-cC---CeEEEE
Confidence            455667778899999999999999998    88999998531 1   1111         12333221 11   134899


Q ss_pred             EeecCCCCCeEEEEEEeeCCCC-ceeEEEEEEEecCC---CeeEE-----EEccccccEeEEEEEeeccC--CCccceE
Q psy15734        240 IRSILSHQFGSYRCVAVNALGE-TDGFIKVYVNLVDG---DIFQI-----RKMSRLHMGAYLCIASNGVV--PSVSHRI  307 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~---~~~~~-----~~~~~~~~g~~~C~a~~~~~--~~~~w~v  307 (314)
                      |.+++.+|+|.|+|.|.|..+. ......|.|...+.   +.+.+     ..+..++...+.|.+.+.+.  +.+.|.-
T Consensus        79 I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k  157 (240)
T 1moe_A           79 IDPVEADDVATYYCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNIKDTYMHWVK  157 (240)
T ss_dssp             ESSCCGGGCEEEEEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEE
T ss_pred             EcCCChhhCEEEEEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccCCCCEEEEEE
Confidence            9999999999999999998664 34556677766431   21221     13445566679999998873  5899965

>4hwu_A Fibroblast growth factor receptor 2; FGFR2, KGFR, CD332, IG-C2 type 1 domain, IG superfamily, IMM system, structural genomics, PSI-biology; 2.90A {Mus musculus}

Probab=99.44  E-value=2.9e-13  Score=91.14  Aligned_cols=83  Identities=19%  Similarity=0.273  Sum_probs=65.6

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ++....+.+|+++.|.|.+.+  .|.+.|+++ +..+....++..   .++     .|.|.++..+|+|.|+|.|.|..|
T Consensus         7 ~p~~~~v~~G~~~~l~C~~~~--~p~v~W~k~-g~~~~~~~~~~~---~~~-----~L~i~~~~~~D~G~Y~C~a~n~~g   75 (95)
T 4hwu_A            7 QPEAYVVAPGESLELQCMLKD--AAVISWTKD-GVHLGPNNRTVL---IGE-----YLQIKGATPRDSGLYACTAARTVD   75 (95)
T ss_dssp             -CEEEEECTTSCEEEECCCCT--TCEEEEEET-TEEECCCSSEEE---ETT-----EEEECSCCGGGCEEEEEEEECSSC
T ss_pred             CCCcEEECCCCEEEEEEEeCC--CCEEEEEEC-CEECCCCceEEE---eCC-----EEEECcCCcccCEEEEEEEccCCC
Confidence            456677899999999999987  579999996 444444443332   234     899999999999999999999999


Q ss_pred             CceeEEEEEEEecC
Q psy15734        261 ETDGFIKVYVNLVD  274 (314)
Q Consensus       261 ~~~~~~~l~V~~~~  274 (314)
                      .....+.|.|..+.
T Consensus        76 ~~~~~~~l~V~~~~   89 (95)
T 4hwu_A           76 SETWIFMVNVTDAA   89 (95)
T ss_dssp             EEEEEEEEEECCC-
T ss_pred             cEEEEEEEEEeCCc
Confidence            88888888887654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=99.44  E-value=9.6e-13  Score=104.21  Aligned_cols=126  Identities=18%  Similarity=0.207  Sum_probs=83.2

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe---e-eec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD---M-IIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~---~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+...+....+.+|+++.|.|.+.+.|.+.+.|++.+..   . +..         ..++.... ..   ...+|.|.++
T Consensus        26 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v  101 (237)
T 3sob_L           26 QMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-SG---TDFTLTISSL  101 (237)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEESSC
T ss_pred             eEEeCCCeEEEeCCCcEEEEEecCCCCCceEEEEEECCCCCCEEEEEeccccCCCCCCcEEEEc-CC---CEEEEEECCC
Confidence            444556667899999999999999999999999984311   1 110         12333221 11   2358999999


Q ss_pred             CCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEEc----cccccEeEEEEEeeccC--CCccce
Q psy15734        244 LSHQFGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRKM----SRLHMGAYLCIASNGVV--PSVSHR  306 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~~----~~~~~g~~~C~a~~~~~--~~~~w~  306 (314)
                      +.+|+|.|+|.+.|..+.. .....|.|.... .+.+.+...    ..++...++|.+.+.++  +.+.|.
T Consensus       102 ~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p~~~~v~W~  172 (237)
T 3sob_L          102 QPEDFATYYCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWK  172 (237)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             ChhhCeEEEEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCCCceEEEEE
Confidence            9999999999999877532 334456665532 333333221    12344679999999654  789995

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=99.44  E-value=2.1e-12  Score=87.27  Aligned_cols=89  Identities=20%  Similarity=0.357  Sum_probs=65.8

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      .+..++..+.+.+|+++.|.|.+.+. |.+.+.|++++. .        +..+.++.+...+ ....|.|.+++.+|+|.
T Consensus         3 ~v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v~W~~~~~-~--------~~~~~~~~~~~~~-~~~~L~i~~v~~~D~G~   72 (97)
T 2bk8_A            3 MVSGQIMHAVGEEGGHVKYVCKIENYDQSTQVTWYFGVR-Q--------LENSEKYEITYED-GVAILYVKDITKLDDGT   72 (97)
T ss_dssp             CEECCCCCEEECTTCCEEEEEEEESCCTTCEEEEEETTE-E--------CCSSSSEEEEEET-TEEEEEECSCCGGGCEE
T ss_pred             ceeccCcCEEEcCCCcEEEEEEEeccCCCCEEEEEECCE-E--------CcCCCCEEEEEcC-CeEEEEEecCChhhCeE
Confidence            45567888999999999999999996 889999999543 2        2234455554332 23479999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEE
Q psy15734        102 YMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |+|.+.|. +.....+.|.|.
T Consensus        73 Y~C~a~n~~g~~~~~~~l~V~   93 (97)
T 2bk8_A           73 YRCKVVNDYGEDSSYAELFVK   93 (97)
T ss_dssp             EEEEEECSSCEEEEEEEEEET
T ss_pred             EEEEEECCCCeEeEEEEEEEE
Confidence            99999775 444444555553

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.44  E-value=6.9e-13  Score=91.56  Aligned_cols=91  Identities=16%  Similarity=0.237  Sum_probs=69.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      ||.|...+....+.+|+++.|.|.+.+.  |.+.|++++. .+....++.+.....    .+.|.|.+++.+|+|.|+|.
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~-~~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~   80 (108)
T 2dm7_A            8 PARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPE-TLRDGGRYSLKQDGT----RCELQIHDLSVADAGEYSCM   80 (108)
T ss_dssp             CCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSS-BCCSSSSCEEEEETT----EEEEEESSCCTTTCSEEEEE
T ss_pred             CCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCE-ECCCCCCEEEEecCC----EEEEEECCCCcccCEEEEEE
Confidence            6777777788899999999999999875  6899999744 444445555432221    34799999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      |.|    ....+.|.|..+|..
T Consensus        81 a~n----~~~~~~l~V~~~p~~   98 (108)
T 2dm7_A           81 CGQ----ERTSATLTVRALPAR   98 (108)
T ss_dssp             ETT----EEEEEECEEECCCSS
T ss_pred             EcC----CEEEEEEEEecCCHH
Confidence            944    567788888876543

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=99.43  E-value=1.5e-12  Score=103.84  Aligned_cols=127  Identities=14%  Similarity=0.103  Sum_probs=83.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC---------------eeeecC---CceeeeEeeCCeeeEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG---------------DMIITG---DDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~---------------~~~~~~---~~~~~~~~~~~~~~~s~L  238 (314)
                      .+..++....+.+|+++.|.|.+.+.|.+.+.|++...               ......   .++.+.....   ...+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~---~~~~L   79 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHASL---TLSTL   79 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSEEEEEECTTSCCEEEEEECTTSCCEECTTCCGGGEEEEEEET---TEEEE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEEEEEEECCCCCcEEEEEEccCCCceecCcccCCcEEEEecCC---CEEEE
Confidence            45566777889999999999999999999999998211               101111   2233222111   23589


Q ss_pred             EEeecCCCCCeEEEEEEeeCCCC----ceeEEEEEEEec----CCCeeEEEEc-----cccccEeEEEEEeeccCC--Cc
Q psy15734        239 KIRSILSHQFGSYRCVAVNALGE----TDGFIKVYVNLV----DGDIFQIRKM-----SRLHMGAYLCIASNGVVP--SV  303 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~----~~~~~~~~~~-----~~~~~g~~~C~a~~~~~~--~~  303 (314)
                      .|.+++.+|+|.|+|.|.|..+.    ......|.|...    ..+.+.+...     ..++...+.|.+.+.+++  .+
T Consensus        80 ~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v  159 (246)
T 4dzb_B           80 TVTSAHPEDSSFYICSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVEL  159 (246)
T ss_dssp             EECSCCGGGCEEEEEEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEE
T ss_pred             EECCCCHHHCEEEEEEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCCceEE
Confidence            99999999999999999986541    224456777641    1233333221     124556799999998765  78


Q ss_pred             cce
Q psy15734        304 SHR  306 (314)
Q Consensus       304 ~w~  306 (314)
                      .|.
T Consensus       160 ~W~  162 (246)
T 4dzb_B          160 SWW  162 (246)
T ss_dssp             EEE
T ss_pred             EEE
Confidence            885

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.43  E-value=2.3e-12  Score=88.66  Aligned_cols=101  Identities=15%  Similarity=0.129  Sum_probs=70.1

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ..+|.|..++.++.+.+|+++.|.|.+.+  .+.+.|++++ ..+.....  .......++.+..++.. .+|.|.+++.
T Consensus         6 ~p~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~knG-~~l~~~~~~~~~~~~~~r~~i~~~g~~-~~L~I~~v~~   81 (112)
T 2e6q_A            6 SGTARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLNG-EELKSNEPEGQVEPGALRYRIEQKGLQ-HRLILHAVKH   81 (112)
T ss_dssp             CSCCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEESS-CBCCSSCCCTTSCTTSCEEEECCBTTE-EEEEEESCCS
T ss_pred             cCCcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEECC-EECccCcccccccccccEEEEEeCCcE-EEEEECCCCH
Confidence            45678999999999999999999999987  6689999954 43321100  00000005555544333 3799999999


Q ss_pred             CCCeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         97 TDRGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|+|.|+|...+  .....+.|.|..+|.
T Consensus        82 ~D~G~Y~~~~~~--~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           82 QDSGALVGFSCP--GVQDSAALTIQESSG  108 (112)
T ss_dssp             TTCSEEEEEEET--TEEEEEEEEEECSSC
T ss_pred             HHCccEEEEEEC--CeeEEEEEEEeCCCc
Confidence            999999875432  334577888887764

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.43  E-value=9.8e-13  Score=95.96  Aligned_cols=93  Identities=15%  Similarity=0.165  Sum_probs=68.9

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeee-------ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMI-------ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .+....+.+|++++|.|.+.+.|.+.+.|++.+...+       ....++.......   ...+|.|.+++.+|+|.|+|
T Consensus        44 ~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~~~~~~~~~~r~~~~~~~~---~~~~L~I~~v~~~DsG~Y~C  120 (145)
T 1z9m_A           44 WTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYFGEKRALRDNRIQLVTSTP---HELSISISNVALADEGEYTC  120 (145)
T ss_dssp             BCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEETTEECSCCTTEEEEEECS---SEEEEEECSCCGGGCEEEEE
T ss_pred             CCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEECCceecccCCEEEecCCC---CeEEEEECCCChhhCEEEEE
Confidence            4556778999999999999999999999996432222       1123333222111   13489999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecCCCe
Q psy15734        254 VAVNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      .|.|. |.....+.|.|..+|.++
T Consensus       121 ~~~n~-~~~~~~~~L~V~~~P~~P  143 (145)
T 1z9m_A          121 SIFTM-PVRTAKSLVTVLGIPQKP  143 (145)
T ss_dssp             EECSS-SCEEEEEEEEEECCCC--
T ss_pred             EEEcC-CCceEEEEEEEEeCCCCC
Confidence            99999 888899999998876554

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=99.43  E-value=1.6e-12  Score=94.78  Aligned_cols=103  Identities=19%  Similarity=0.361  Sum_probs=76.8

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      ..+...+..+.+.+|++++|.|.+.+.+.+.+.|++.+...+.. .......+.|+.+.......++|.|.+++.+|+|.
T Consensus        39 ~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~~~~~~~i~~-~~~~~~~~~r~~~~~~~~~~~~L~I~~v~~~DsG~  117 (145)
T 1z9m_A           39 DDSQPWTSDETVVAGGTVVLKCQVKDHEDSSLQWSNPAQQTLYF-GEKRALRDNRIQLVTSTPHELSISISNVALADEGE  117 (145)
T ss_dssp             CTTCCBCCCEEEETTSCEEEEEECSCCTTCCEEEECTTCCEEEE-TTEECSCCTTEEEEEECSSEEEEEECSCCGGGCEE
T ss_pred             cceecCCceEEEEcCCCEEEEEEEcCCCCcEEEEECCCCcEEEE-CCceecccCCEEEecCCCCeEEEEECCCChhhCEE
Confidence            34556788899999999999999988888899999755444322 11122334677665544455689999999999999


Q ss_pred             EEEEEecCCCcceeEEEEEEeCCc
Q psy15734        102 YMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus       102 Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      |+|.+.+.+.....+.|.|.++|.
T Consensus       118 Y~C~~~n~~~~~~~~~L~V~~~P~  141 (145)
T 1z9m_A          118 YTCSIFTMPVRTAKSLVTVLGIPQ  141 (145)
T ss_dssp             EEEEECSSSCEEEEEEEEEECCCC
T ss_pred             EEEEEEcCCCceEEEEEEEEeCCC
Confidence            999997765556677888887764

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=99.43  E-value=1.1e-12  Score=102.07  Aligned_cols=124  Identities=16%  Similarity=0.168  Sum_probs=81.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC---CceeEEecCCC-eee---e---------cCCceeeeEeeCCeeeEEEEEEe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP---ASLNYWTNEKG-DMI---I---------TGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~~~W~~~~~-~~~---~---------~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +.. +....+.+|+++.|.|.+.+.|   .+.+.|++++. ..+   .         ...++.... ..   ....|.|.
T Consensus         4 v~~-p~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~   78 (212)
T 1q0x_L            4 VTQ-ESALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSL-IG---DKAALTIT   78 (212)
T ss_dssp             EEE-CSEEEECTTCCEEEEEEESSSCCCGGGCCEEEEEETTTEEEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEES
T ss_pred             EEC-CCeEeecCCCCEEEEEEecccccCCCCeEEEEEeCCCCCceEEEEcCcccCCcccccEEEEe-eC---CEEEEEEC
Confidence            444 6777899999999999999988   48999998531 111   1         012222221 11   13489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec--CCCeeEEEEc----cccccEeEEEEEeeccCC--Cccce
Q psy15734        242 SILSHQFGSYRCVAVNALGET-DGFIKVYVNLV--DGDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~--~~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      +++.+|+|.|.|.|.|..+.. .....|.|...  ..+.+.+...    ..++...+.|.+.+.+++  .+.|.
T Consensus        79 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~  152 (212)
T 1q0x_L           79 GAQTEDEAIYFCALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPGVVTVDWK  152 (212)
T ss_dssp             SCCGGGCEEEEEEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSSCCEEEEE
T ss_pred             CCCccCCEEEEEEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCCCeEEEEE
Confidence            999999999999999987632 23445666432  2344443221    133456799999997655  78895

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=99.43  E-value=3.3e-13  Score=104.96  Aligned_cols=115  Identities=11%  Similarity=0.077  Sum_probs=82.1

Q ss_pred             eecCccEEEEEEEeec-CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734        187 AFVSQTVELHCHTEAF-PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      ...++.+.|.|.+.+. |.+.+.|+++ +..+....++.+....+    ...|.|.++..+|+|.|+|.|.|..|.....
T Consensus        14 ~c~~~~~~l~C~~~~~~p~~~i~W~~~-g~~i~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~~~n~~~~~~~~   88 (212)
T 2r15_A           14 QSTAEGIQLYSFVTYYVEDLKVNWSHN-GSAIRYSDRVKTGVTGE----QIWLQINEPTPNDKGKYVMELFDGKTGHQKT   88 (212)
T ss_dssp             EECSSEEEEEEEBSSCCSSCEEEEEET-TEECCCCSSEEEEEETT----EEEEEEESCCGGGCEEEEEEEECSSCEEEEE
T ss_pred             EEcCceEEEEEEEeccCCCceEEEEEC-CEEccCCCeEEEEEeCC----EEEEEECCCCcccCEEEEEEEecCCcceEEE
Confidence            3467788888888885 5899999997 44454555555433222    2479999999999999999999988877777


Q ss_pred             EEEEEEe------------------cCCCeeEE-----EEccccccEeEEEEEeeccCCCccce
Q psy15734        266 IKVYVNL------------------VDGDIFQI-----RKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       266 ~~l~V~~------------------~~~~~~~~-----~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      +.|.|..                  .+.+.+..     ..+..++...+.|.+.+.|.|.+.|.
T Consensus        89 ~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v~W~  152 (212)
T 2r15_A           89 VDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEVSWL  152 (212)
T ss_dssp             EEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEEEEE
T ss_pred             EEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceEEEE
Confidence            7765532                  11122221     23445566679999999999999995

>3shs_A HOC head outer capsid protein; immunoglobulin-like domain, phage capsid decorative protein, interaction with bacteria; 1.95A {Enterobacteria phage RB49}

Probab=99.43  E-value=3.5e-11  Score=93.79  Aligned_cols=166  Identities=14%  Similarity=0.173  Sum_probs=96.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC-CC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN-LR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~-~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +...|....+..|+.++|.|.+.+ .|   +..+.|+|++ ..+        ...           ...|.|..+...|+
T Consensus         5 Vs~~P~~~~i~~GdsVTLTatVaGGkP~pspyTYqWyKDG-~~I--------sGa-----------T~tLti~s~t~sdS   64 (304)
T 3shs_A            5 VSIQSNKRCFLAGDGFTLTATVAGDEPLPSNLTYTWTKDD-QPH--------ENN-----------TATLTVADATSENA   64 (304)
T ss_dssp             EEEEESCSSBCTTCCEEEEEEEEESSSCCCCEEEEEEETT-EEC--------SCC-----------SSEEEESSCCGGGC
T ss_pred             EEeCCCCccccCCCCEEEEEEecCCCCCCCCceEEEEECC-ccc--------cCC-----------cceEEeeeccccCC
Confidence            334566677889999999999854 45   5799999954 321        101           11699999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeCCce-eeecCcceeEEecCceEEEEEEe--cc-cCCCceEEEcCCCceeecCCeeC
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVPPRI-LLDRTSTDVVVREGTEVTLECSA--VG-YPEPYVAWRREDGKAINYNGELV  174 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~p~~-~~~~~~~~~~~~~g~~~~l~C~~--~~-~p~p~~~W~~~~~~~~~~~~~~~  174 (314)
                      |.|+|.+.+. +.......+.|...+.+ .....+....+..|..+.|.+.+  .| .|+.                   
T Consensus        65 G~YqCvVTDa~Gcs~tSs~VtVT~~a~l~i~it~P~s~~vssg~sVtL~aTVt~SGGtppA-------------------  125 (304)
T 3shs_A           65 GSYKVTVQDTDTMTSVESEVFLMEEAELIVNITEPQHFYVSSQTDVELHATVKFSGGKTPA-------------------  125 (304)
T ss_dssp             EEEEEEEEETTTCCEEECCCEEECBCCEEEEESSCSEEEECSSCCEEEEEEEEETTSCCSS-------------------
T ss_pred             eEEEEEEEECCCCeeeeeeEEEeccCceeEEecCCCceeccCCCeEEEEEEEeccCCCCcc-------------------
Confidence            9999999664 33322223333332221 11112333334445556665554  22 2210                   


Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                                                ..+..++.|+++++. +. +..              .|.+......++|.|+|+
T Consensus       126 --------------------------~~~~yTYQWyKngt~-Is-gAq--------------~lT~sS~TateaG~YtV~  163 (304)
T 3shs_A          126 --------------------------DNYELHYSWSKGEDV-ID-TTQ--------------DITIQEFTADKNGVYTVK  163 (304)
T ss_dssp             --------------------------TTCCCEEEEEETTEE-EE-SSS--------------EEEECSCCGGGCEEEEEE
T ss_pred             --------------------------cCCCceeEEeeCCeE-cc-Ccc--------------ccceeeEEecCCeEEEEE
Confidence                                      001234555554332 21 111              677888888999999999


Q ss_pred             EeeCCCCc--eeEEEEEE
Q psy15734        255 AVNALGET--DGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~--~~~~~l~V  270 (314)
                      +.|..+..  +.++.+.+
T Consensus       164 VTn~~~~c~~s~~~~i~~  181 (304)
T 3shs_A          164 VWGESEDSAASASTKIML  181 (304)
T ss_dssp             EESSSGGGCEEEEEEEEE
T ss_pred             EEcCCCCcccccceEEEE
Confidence            99987633  44444433

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=99.43  E-value=6.6e-12  Score=95.13  Aligned_cols=119  Identities=13%  Similarity=0.120  Sum_probs=79.5

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ...|..+.|.+|+++.|.|.+....+..+.|--.-+...       .         ..+.....+.|.+++ +|.+.|.|
T Consensus         6 ~v~P~~~~V~~G~Sv~l~Cs~~c~~p~~~~~~t~l~~~~-------~---------~~g~~~~~~~ls~vs-~d~~~~~C   68 (196)
T 3bn3_B            6 DLQPRVAFVERGGSLWLNCSTNCPRPERGGLETSLRRNG-------T---------QRGLRWLARQLVDIR-EPETQPVC   68 (196)
T ss_dssp             EEESSEEEEETTEEEEEEEEECCSSCSEEEEECSSEEEE-------E---------EEETTEEEEEEEEEC-SSEECCEE
T ss_pred             EEcCCCcEEcCCCeEEEEEeCCCCCCCccEEEEccCCee-------E---------ccccCceEEEEEEEc-cCCCceEE
Confidence            344567889999999999999643333677743211111       0         001111248889999 88888999


Q ss_pred             EEecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEeccc-CCCc--eEEEc
Q psy15734        105 QINTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGY-PEPY--VAWRR  161 (314)
Q Consensus       105 ~~~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~-p~p~--~~W~~  161 (314)
                      .+... ......+.|.|+.+|........ ...+.+|+.++|.|.+.+. |...  +.|++
T Consensus        69 ~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~-~~~~~~G~~~tL~C~v~~~~P~~~L~i~wlk  128 (196)
T 3bn3_B           69 FFRCARRTLQARGLIRTFQRPDRVELMPL-PPWQPVGENFTLSCRVPGAGPRASLTLTLLR  128 (196)
T ss_dssp             EEEETTEEEEEECEEEEEBCCCCCEECCC-CSSEETTSEEEEEEEETTCBCGGGEEEEEEE
T ss_pred             EEECCCCceEEEEEEEEecCCCcCEEccC-CccccCCCcEEEEEEeCCccCCCCcEEEEEe
Confidence            98654 34466778899988876544322 2236789999999999875 5544  79998

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=99.43  E-value=4.8e-13  Score=101.38  Aligned_cols=114  Identities=16%  Similarity=0.181  Sum_probs=79.9

Q ss_pred             CcceeecCccEEEEEEEe--ecCCceeEEec--CCCeee---------ecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        183 QLEGAFVSQTVELHCHTE--AFPASLNYWTN--EKGDMI---------ITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~--g~p~p~~~W~~--~~~~~~---------~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      ..+...+|++++|.|...  +.|.+.+.|++  ++..+.         ....++.  ...++     +|.|.+++.+|+|
T Consensus         7 ~~v~g~~G~sv~L~~~~~~~~~~~~~i~W~k~~~~~~i~~~~~~~~~~~~~~R~~--~~~ng-----sL~I~~v~~~DsG   79 (182)
T 1hnf_A            7 LETWGALGQDINLDIPSFQMSDDIDDIKWEKTSDKKKIAQFRKEKETFKEKDTYK--LFKNG-----TLKIKHLKTDDQD   79 (182)
T ss_dssp             EEEEEETTSCEEECCTTCCCCSSEEEEEEEEGGGCCEEEEECGGGCEEESCTTEE--ECTTS-----CEEECSCCGGGCE
T ss_pred             cEEEEecCCCEEEeCCcccccCcCCEEEEEECCCCcEEEEEeCccCCCCCCCeEE--ECCCC-----CEEECCCChhhCE
Confidence            345678999999999553  35678999999  644321         1222332  33555     9999999999999


Q ss_pred             EEEEEEeeCCCCce--eEEEEEEEecCC-CeeEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        250 SYRCVAVNALGETD--GFIKVYVNLVDG-DIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       250 ~Y~C~a~n~~g~~~--~~~~l~V~~~~~-~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      .|+|.|.|..|...  ..+.|.|..... +.+.. .   .....++|.|.+.+.+.++|..
T Consensus        80 ~Y~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~-~---~~~v~L~C~~~~~p~~~~~W~~  136 (182)
T 1hnf_A           80 IYKVSIYDTKGKNVLEKIFDLKIQERVSKPKISW-T---CINTTLTCEVMNGTDPELNLYQ  136 (182)
T ss_dssp             EEEEEEEETTSCEEEEEEEEEEEECCCCCCEEEE-E---TTTTEEEEECSSCSSCEEEEEE
T ss_pred             EEEEEEEeCCCceeEEEEEEEEEcCcCCCCEEEE-c---cCcEEEEeEccCCCCCEEEEEE
Confidence            99999999988763  567788876432 33322 1   1135799999988888899853

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.43  E-value=4.1e-13  Score=93.06  Aligned_cols=99  Identities=22%  Similarity=0.258  Sum_probs=69.4

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCC---CceEEEEEEcCceeEEEeeeeeeecCcCEEEEe--CC---ceeEEEE
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENL---REYKVAWVKMITQTILSIHHKVVTQNKRVSITF--ND---HRSWFLH   90 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~--~~---~~~~~L~   90 (314)
                      ...+.|+..|..+.+.+|++++|.|.+.+.   +.+.|.|||+....+..      ....++.+..  ..   ...+.|+
T Consensus        10 ~~~~~f~~~P~~v~V~eG~~v~L~C~v~g~~~~p~P~V~W~Kgk~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~   83 (118)
T 2edn_A           10 EPTGVFLKKPDSVSVETGKDAVVVAKVNGKELPDKPTIKWFKGKWLELGS------KSGARFSFKESHNSASNVYTVELH   83 (118)
T ss_dssp             CCSSSCSBCCCCCEEETTSCEECCEEEETTTSSSCCCCEEEETTTCCCCC------STTSSCEEEEEECSSSCEEEEEEE
T ss_pred             CCcceEEECCCCeEEeCCCCEEEEEEEeccCCCCCCcEEEeeCCEeccCC------CCccEEEeccccccccccceEEEE
Confidence            345678888999999999999999999764   67899999943111100      0122333321  11   1235899


Q ss_pred             EeeecCCCCeEEEEEEecC-CCcceeEEEEEEeC
Q psy15734         91 LRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVP  123 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~  123 (314)
                      |.+++.+|+|.|+|.+.+. +..+..+.|.|.++
T Consensus        84 I~~v~~~D~G~Y~Cevsn~~g~~s~~~~L~V~~~  117 (118)
T 2edn_A           84 IGKVVLGDRGYYRLEVKAKDTCDSCGFNIDVEAP  117 (118)
T ss_dssp             ESSCCTTTCSCEEEEEECSSCEEEEEECCEEECC
T ss_pred             EeeCChhhCEEEEEEEEEcCCcEEEEEEEEEEcC
Confidence            9999999999999999775 55566777887764

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=99.43  E-value=6.4e-13  Score=89.42  Aligned_cols=89  Identities=17%  Similarity=0.220  Sum_probs=66.7

Q ss_pred             cCCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         17 EKPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        17 ~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ....+|.|...+..+.+.+|+++.|.|.+.+.+ +.+.|++++ ..+        ..+.++.+..     ..|.|.+++.
T Consensus         5 ~~~~pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~i~W~k~g-~~~--------~~~~~~~~~~-----~~L~i~~~~~   69 (95)
T 2ckn_A            5 EQAQPWGVPVEVESLLVHPGDLLQLRCRLRDDV-QSINWLRDG-VQL--------VESNRTRITG-----EEVEVRDSIP   69 (95)
T ss_dssp             TSSCSCCBTTBBCCEEECTTSCEEEECCEESSC-CEEEEEBTT-BCC--------CCCSSEEECS-----SEEEESSCCG
T ss_pred             CCCCCCEEEcCcceEEEcCCCeEEEEEECCCCC-CceEEEECC-Eec--------CCCCCEEEeC-----CEEEECCCCh
Confidence            345678888889999999999999999999877 699999944 322        2234544431     2799999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEE
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      +|+|.|+|.+.|. +.....+.|.|
T Consensus        70 ~D~G~Y~C~a~n~~g~~~~~~~l~V   94 (95)
T 2ckn_A           70 ADSGLYACVTSSPSGSDTTYFSVNV   94 (95)
T ss_dssp             GGSEEEEEEEEETTEEEEEEEEEEE
T ss_pred             HHCEEEEEEeccCCCcEEEEEEEEE
Confidence            9999999999775 33344444444

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=99.43  E-value=1.6e-13  Score=109.60  Aligned_cols=125  Identities=15%  Similarity=0.129  Sum_probs=83.2

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCce-----eEEecCCCeeee-------cCC-------ceeeeEeeCCeeeEEEEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASL-----NYWTNEKGDMII-------TGD-------DYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~-----~~W~~~~~~~~~-------~~~-------~~~~~~~~~~~~~~s~L~i  240 (314)
                      .++....+.+|+++.|.|.+.|.|.+.     +.|++++.....       ...       +..+.. ........+|.|
T Consensus         8 ~~p~~~~v~~G~~v~L~C~~~g~p~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~sL~I   86 (248)
T 3pv7_A            8 MAGGTQITPLNDNVTIFCNIFYSQPLNITSMGITWFWKSLTFDKEVKVFEFFGDHQEAFRPGAIVSP-WRLKSGDASLRL   86 (248)
T ss_dssp             STTSEEEEETTSCEEECCEEEESSCCCTTSCEEEEEEECSSCCCEEEEEEEESSCEEESSTTCBCCH-HHHTTTBCCEEE
T ss_pred             eCCCCeEEeCCCCEEEeeEEecCCCcCCCceEEEEEEEcCCCCcceEEEEecCCcccccCCceEEEe-ccCCCCcEEEEe
Confidence            355666889999999999999998876     999986432110       000       000000 000011236999


Q ss_pred             eecCCCCCeEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEc---cccccEeEEEEEee-ccCC-CccceE
Q psy15734        241 RSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKM---SRLHMGAYLCIASN-GVVP-SVSHRI  307 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~---~~~~~g~~~C~a~~-~~~~-~~~w~v  307 (314)
                      .+++.+|+|.|+|.+.|..+.....+.|.|..+|  .+.+...   ..+....++|.+.+ .|.| .+.|..
T Consensus        87 ~~v~~~D~G~Y~C~~~~~~~~~~~~~~L~V~~~P--~v~~~~~~~~~~~~~~~L~C~~~g~~P~pi~v~W~k  156 (248)
T 3pv7_A           87 PGIQLEEAGEYRCEVVVTPLKAQGTVQLEVVASP--ASRLLLDQVGMKENEDKYMCESSGFYPEAINITWEK  156 (248)
T ss_dssp             SSCCGGGCEEEEEEEEETTEEEEEEEEEEEEBCC--EEEEECC--------CEEEEEEEEEBSSCCEEEEEE
T ss_pred             CCCCHHHCeEEEEEEEeCCccceeEEEEEEecCC--ceEEecCCccccCCCcEEEEEEccEECCCeEEEEEE
Confidence            9999999999999999998888888888888754  3333221   12233459999999 6777 899974

>2eys_A NKT15; natural killer T cell receptor, immune system; 2.21A {Homo sapiens} PDB: 2eyr_A 2eyt_A 3huj_E* 3tyf_A 3tzv_A* 3sdx_E* 2po6_C* 2cde_A 3to4_C*

Probab=99.42  E-value=4.6e-12  Score=98.15  Aligned_cols=86  Identities=19%  Similarity=0.312  Sum_probs=60.9

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEE-eeeeeeecCcCEEEEeC-CceeEEEEEeeecC
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILS-IHHKVVTQNKRVSITFN-DHRSWFLHLRDVQE   96 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~-~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~   96 (314)
                      .+...+..+.+.+|++++|.|.+.+.....+.|||... .   .+.. .........+|+.+..+ ....+.|.|.+++.
T Consensus         5 ~v~Q~p~~~~v~~G~svtL~C~~s~~~~~~v~Wyrq~~g~~~~~l~~~~~~~~~~~~~Rfs~~~~~~~~~~sL~I~~~~~   84 (210)
T 2eys_A            5 QVEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQL   84 (210)
T ss_dssp             CEEEECSEEEEETTCCEEEEEEECCSSCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCG
T ss_pred             eEEEeCCEEEEecCCCEEEEEEECCCCCCeEEEEEeCCCCCCEEEEEEecCCCCccCCCEEEEEcCCCCEEEEEEccCCc
Confidence            34555778999999999999999776556899999642 1   2221 11011123567777643 34457899999999


Q ss_pred             CCCeEEEEEEec
Q psy15734         97 TDRGWYMCQINT  108 (314)
Q Consensus        97 ~d~G~Y~C~~~~  108 (314)
                      +|+|.|.|.+.+
T Consensus        85 ~Dsg~Y~C~~~~   96 (210)
T 2eys_A           85 SDSASYICVVSD   96 (210)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccCceEEEEEEc
Confidence            999999999865

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=99.42  E-value=2.1e-12  Score=86.82  Aligned_cols=88  Identities=19%  Similarity=0.286  Sum_probs=66.2

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      ..|.|..++..+.+.+|+++.|.|.+ +.+.+.+.|++++. .+        ..+.++.+..++. ...|.|.+++.+|+
T Consensus         7 ~~~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~-~l--------~~~~~~~~~~~~~-~~~L~I~~v~~~D~   75 (95)
T 2k1m_A            7 PVSAFSKKPRSVEVAAGSPAVFEAET-ERAGVKVRWQRGGS-DI--------SASNKYGLATEGT-RHTLTVREVGPADQ   75 (95)
T ss_dssp             CCCCCSBCCCCEEEETTSCEEEEEEC-SSSSCCCEEECSSS-EE--------CSSTTCEEEEETT-EEEEEESSCCTTCC
T ss_pred             CCCeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeEEEEECCE-EC--------CCCCcEEEEEcCC-EEEEEEcCCCcccC
Confidence            45788888999999999999999999 66788999999543 22        2344555554433 33799999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      |.|+|.+   +.....+.|.|.
T Consensus        76 G~Y~C~a---g~~~~~~~l~V~   94 (95)
T 2k1m_A           76 GSYAVIA---GSSKVKFDLKVI   94 (95)
T ss_dssp             SEEEEEE---TTEEEEEEEEEE
T ss_pred             EEEEEEE---CCceEEEEEEEe
Confidence            9999999   334445566654

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.42  E-value=6.8e-13  Score=90.78  Aligned_cols=87  Identities=14%  Similarity=0.127  Sum_probs=62.1

Q ss_pred             CCeEEcCCCc-ceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-CceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTIPNQL-EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-DDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~~~~~-~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +|.|...+.. ..+.+|+++.|.|.+ +.|.+.+.|++++.. +... .++.+....+    ...|.|.++..+|+|.|+
T Consensus        15 ~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~~-l~~~~~~~~~~~~~~----~~~L~I~~v~~~D~G~Y~   88 (104)
T 1pd6_A           15 STAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQE-IQMSGSKYIFESIGA----KRTLTISQCSLADDAAYQ   88 (104)
T ss_dssp             TSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSSE-ECCCSSSSEEEEETT----EEEEEECSCSSSSCEEEE
T ss_pred             CCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCEE-CCCCCCeEEEEecCC----EEEEEECCCCcccCEEEE
Confidence            4444444433 789999999999999 799999999997544 4333 4555432221    348999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEE
Q psy15734        253 CVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~  271 (314)
                      |.|.|    ...+..|.|.
T Consensus        89 C~a~~----~~~~~~l~V~  103 (104)
T 1pd6_A           89 CVVGG----EKCSTELFVK  103 (104)
T ss_dssp             EEETT----EEECCEEEEE
T ss_pred             EEECC----CcEEEEEEEe
Confidence            99933    4455555553

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=99.42  E-value=1.4e-12  Score=104.00  Aligned_cols=123  Identities=14%  Similarity=0.123  Sum_probs=81.5

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e-e--ee--------------cCCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D-M--II--------------TGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~-~--~~--------------~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+.+|++++|.|.+.+.|  .+.+.|++.+. . .  +.              ...++.+......  ...+|.|.+
T Consensus        10 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I~~   87 (247)
T 2ghw_B           10 GGGVVQPGKSLRLSCAASGFAFSSYAMHWVRQAPGKGLEWVAVISYDGSNKYYADSVKGRFTISRDNSK--NTLYLQMNS   87 (247)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCEEEecCCcEEEEEEeccccCCCceEEEEEeCCCCceEEEEEEecCCCceeeCccccCcEEEEEeCCC--CEEEEEECc
Confidence            447889999999999999987  68899998431 1 1  10              1123333221111  134899999


Q ss_pred             cCCCCCeEEEEEEeeCCCC--ceeEEEEEEEecC-------------CCeeEE----EEccccccEeEEEEEeeccCCCc
Q psy15734        243 ILSHQFGSYRCVAVNALGE--TDGFIKVYVNLVD-------------GDIFQI----RKMSRLHMGAYLCIASNGVVPSV  303 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~--~~~~~~l~V~~~~-------------~~~~~~----~~~~~~~~g~~~C~a~~~~~~~~  303 (314)
                      ++.+|+|.|+|.|.|..+.  ......|.|...+             ...+..    ..+..++...+.|.+.+.+++.+
T Consensus        88 v~~~D~G~Y~C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           88 LRAEDTAVYYCARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             CCGGGCEEEEEEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CCHHHCEEEEEeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            9999999999999997322  2233466666431             122222    12445666789999999998999


Q ss_pred             cceE
Q psy15734        304 SHRI  307 (314)
Q Consensus       304 ~w~v  307 (314)
                      .|.-
T Consensus       168 ~W~k  171 (247)
T 2ghw_B          168 AWYQ  171 (247)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9965

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=99.42  E-value=1.8e-12  Score=100.02  Aligned_cols=125  Identities=12%  Similarity=0.043  Sum_probs=82.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+. ..+.+|++++|.|.+.+ |.+.+.|+|++............   ... .....|.|.+++.+|+|.|+|.
T Consensus         8 ~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~~~~w~k~g~~~~~~~~~~~~---~~~-~~~~~l~I~~v~~~D~G~Y~C~   81 (201)
T 1nkr_A            8 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIGEH---HDG-VSKANFSISRMTQDLAGTYRCY   81 (201)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEECEE---ETT-EEEEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEEEcC-CccCCCCcEEEEEeccC-CCCEEEEEECCCcCCcceeeeec---CCC-CceEEEEeccCCcccCeEEEEe
Confidence            455555454 56889999999999974 77899999975433211100000   000 1224899999999999999999


Q ss_pred             EeeCC-----CCceeEEEEEEEecC-CCeeEEE---EccccccEeEEEEEeeccCCCccce
Q psy15734        255 AVNAL-----GETDGFIKVYVNLVD-GDIFQIR---KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       255 a~n~~-----g~~~~~~~l~V~~~~-~~~~~~~---~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|..     +..+..+.|.|.... .+.+...   .+..++...+.|.+.+. ++.+.|.
T Consensus        82 a~~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~~v~~G~~v~L~C~~~~~-~~~~~w~  141 (201)
T 1nkr_A           82 GSVTHSPYQVSAPSDPLDIVIIGLYEKPSLSAQPGPTVLAGENVTLSCSSRSS-YDMYHLS  141 (201)
T ss_dssp             EEBTTBTTCCCCCCCCEEEEEECSSCCCEEEEESCSEECTTCEEEEEEEESSC-CSEEEEE
T ss_pred             EecCCCCccccCCCCCEEEEeeccCCCCceecCCCCccCCCCeEEEEEeCCCC-CceEEEE
Confidence            98753     233556778887643 3444432   34455666799999864 5677773

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.42  E-value=2.7e-12  Score=89.34  Aligned_cols=97  Identities=22%  Similarity=0.294  Sum_probs=70.2

Q ss_pred             CCCCceecCCcc---eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         19 PDMPRFAEPVAN---VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        19 ~~~p~~~~~~~~---~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ..+|.++..+..   +.+.+|+++.|.|.+. .+.+.+.|++++ ..+        ..+.++.+...+. ...|.|.+++
T Consensus         8 ~~pp~~~~~p~~~~~~~~~~G~~v~L~C~~~-~p~~~v~W~k~g-~~~--------~~~~~~~~~~~~~-~~~L~I~~v~   76 (113)
T 2cpc_A            8 TDVSSWIVYPSGKVYVAAVRLERVVLTCELC-RPWAEVRWTKDG-EEV--------VESPALLLQKEDT-VRRLVLPAVQ   76 (113)
T ss_dssp             CSCSCSEEESCSCEEEEEETTCCEEEEEEES-CTTCCCEEEETT-EEC--------CCBTTBEEEECSS-EEEEEESSCC
T ss_pred             ccCCcEEEccCCceeEEEEcCCeEEEEEEec-CCCCeEEEEECC-EEC--------ccCCCEEEEECCC-EEEEEECCCC
Confidence            345555554444   7889999999999995 677899999954 332        2234555544432 2379999999


Q ss_pred             CCCCeEEEEEEecCCCcceeEEEEEEeCCceeee
Q psy15734         96 ETDRGWYMCQINTVPMTSQKGYLQVVVPPRILLD  129 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~~~~~~l~v~~~p~~~~~  129 (314)
                      .+|+|.|+|.+.|   ....+.|.|..+|.....
T Consensus        77 ~~D~G~Y~C~a~n---~~~~~~l~V~~~p~~~~~  107 (113)
T 2cpc_A           77 LEDSGEYLCEIDD---ESASFTVTVTEPPVRIIY  107 (113)
T ss_dssp             TTTCEEEEEESSS---CEEEEEEEEECCCCCCCC
T ss_pred             cccCEEEEEEEec---CcEEEEEEEecCCchhcc
Confidence            9999999999976   566778889888865543

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=99.41  E-value=1.5e-12  Score=101.15  Aligned_cols=122  Identities=15%  Similarity=0.099  Sum_probs=78.6

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCC-Ceee---e-------------cCCceeeeEeeCCeeeEEEEEEee
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDMI---I-------------TGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~~---~-------------~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +....+.+|+++.|.|.+.+.|  .+.+.|++++ +...   .             ...++.+.....+  ...+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I~~   84 (210)
T 3d9a_H            7 SGPSLVKPSQTLSLTCSVTGDSITSDYWSWIRKFPGNRLEYMGYVSYSGSTYYNPSLKSRISITRDTSK--NQYYLDLNS   84 (210)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTSCEEECGGGTTTEEEEEEGGG--TEEEEEECS
T ss_pred             CCCEEecCCCcEEEEEEEecccCCCCcEEEEEeCCCCCcEEEEEEcCCCCeEECcccCceEEEEecCCC--CEEEEEECC
Confidence            4556889999999999999876  4899999853 1111   1             1123333221111  134899999


Q ss_pred             cCCCCCeEEEEEEeeCCCCceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        243 ILSHQFGSYRCVAVNALGETDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      ++.+|+|.|.|.|.|.. .......|.|...+  .+.+.+..    +..++...+.|.+.+. |.| .+.|.
T Consensus        85 v~~~D~G~Y~C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  155 (210)
T 3d9a_H           85 VTTEDTATYYCANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  155 (210)
T ss_dssp             CCGGGCEEEEEEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCcccCEEEEEEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCCcEEEEe
Confidence            99999999999999864 22233566665321  23333222    2234455799999997 767 88895

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=99.41  E-value=2e-12  Score=105.02  Aligned_cols=128  Identities=18%  Similarity=0.145  Sum_probs=84.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +.+..++....+.+|+++.|.|.+.+.|.+.+.|++++.    ..+..         ..++.... .+   ...+|.|.+
T Consensus        13 ~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~   88 (276)
T 3auv_A           13 IQMTQSPSSLSASVGDRVTITCRASQDVSTAVAWYQQKPGKAPKLLIYSASFLYSGVPSRFSGSG-SG---TDFTLTISS   88 (276)
T ss_dssp             CCEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEESS
T ss_pred             eeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcEEEEEECCCCCCEEEEEEcCccCCCCCCCEEEec-cC---CeEEEEEcc
Confidence            345556677789999999999999999999999998542    11211         12332221 11   134899999


Q ss_pred             cCCCCCeEEEEEEeeCCCC-ceeEEEEEEEecCC-----------CeeEE-----EEccccccEeEEEEEeecc--CCCc
Q psy15734        243 ILSHQFGSYRCVAVNALGE-TDGFIKVYVNLVDG-----------DIFQI-----RKMSRLHMGAYLCIASNGV--VPSV  303 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~-----------~~~~~-----~~~~~~~~g~~~C~a~~~~--~~~~  303 (314)
                      ++.+|+|.|.|.|.|..+. ......|.|...+.           +.+.+     ..+..++...+.|.+.+.+  .+.+
T Consensus        89 v~~~DsG~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v  168 (276)
T 3auv_A           89 LQPEDFATYYCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFTISDYWI  168 (276)
T ss_dssp             CCGGGCEEEEEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSCGGGSEE
T ss_pred             CChhhCEEEEEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCccCCCCEE
Confidence            9999999999999997654 23345666665431           12222     1344555667999999876  4789


Q ss_pred             cceE
Q psy15734        304 SHRI  307 (314)
Q Consensus       304 ~w~v  307 (314)
                      .|.-
T Consensus       169 ~W~k  172 (276)
T 3auv_A          169 HWVR  172 (276)
T ss_dssp             EEEE
T ss_pred             EEEE
Confidence            9965

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=99.41  E-value=4.2e-12  Score=117.18  Aligned_cols=40  Identities=15%  Similarity=0.297  Sum_probs=35.2

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCCC-ceeEEEEEEEecCC
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALGE-TDGFIKVYVNLVDG  275 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~~~  275 (314)
                      ++|.|.++...|+|.|+|.|.|..|. .+..+.|.|..+|.
T Consensus       223 ~~l~I~~~~~~d~g~Y~c~A~n~~G~~~s~~~~l~V~~~P~  263 (731)
T 2v5y_A          223 ASFNVVNTTKRDAGKYRCMIRTEGGVGISNYAELVVKEPPV  263 (731)
T ss_dssp             EEEEECSCCTTTCEEEEEEEEETTEEEECCCEEEEEECCCC
T ss_pred             EEEEEcccccccCeEEEEEEECCCCCcceeeEEEEEecCCC
Confidence            49999999999999999999999997 67778888877654

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=99.41  E-value=5.2e-13  Score=104.11  Aligned_cols=117  Identities=13%  Similarity=-0.017  Sum_probs=76.1

Q ss_pred             CCcceeecC--ccEEEEEEEeecCCceeEEecC--CCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        182 NQLEGAFVS--QTVELHCHTEAFPASLNYWTNE--KGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       182 ~~~~~v~~g--~~~~l~C~~~g~p~p~~~W~~~--~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      +....+.+|  +++.|.|.+.+ |.+.+.|++.  ++..+....  .......+     .|.|.+++.+|+|.|+|.|.|
T Consensus        14 p~~v~v~eG~~~~v~L~C~~~~-p~~~v~w~~~~~~g~~~~~~~--~~~~~~~~-----~l~I~~v~~~D~G~Y~C~a~n   85 (213)
T 2x1w_L           14 HGVVYITENKNKTVVIPCLGSI-SNLNVSLCARYPEKRFVPDGN--RISWDSKK-----GFTIPSYMISYAGMVFCEAKI   85 (213)
T ss_dssp             CEEEEECCSTTCEEEECCCBSS-TTCCEEEEEETTTEEECCCSS--SCEEETTT-----EEEEEGGGTTTCSEEEEEEC-
T ss_pred             ceEEEEecCCCccEEEeeccCC-CCcEEEEEhhcCCCccccCCC--cccccCCc-----cEEEccCChhcCceEEEEEEE
Confidence            356678899  99999999987 7799999874  454443332  22223344     799999999999999999999


Q ss_pred             CCCCcee-EEEEEEEecCCCeeEEE-----EccccccEeEEEEEeeccC--CCccce
Q psy15734        258 ALGETDG-FIKVYVNLVDGDIFQIR-----KMSRLHMGAYLCIASNGVV--PSVSHR  306 (314)
Q Consensus       258 ~~g~~~~-~~~l~V~~~~~~~~~~~-----~~~~~~~g~~~C~a~~~~~--~~~~w~  306 (314)
                      ..+.... .+.|.|.....+.+.+.     .+..++...+.|.+.+.+.  +.+.|.
T Consensus        86 ~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~~~i~W~  142 (213)
T 2x1w_L           86 NDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNVGIDFNWE  142 (213)
T ss_dssp             ---CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTBCCEEEEE
T ss_pred             CCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCCceEEEEE
Confidence            5443322 26666643222223322     2344556679999998653  468884

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=99.41  E-value=2.5e-12  Score=102.58  Aligned_cols=127  Identities=18%  Similarity=0.205  Sum_probs=83.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecC-----CceeEEecCCC-e---eeec---------CCceeeeEeeCCeeeEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFP-----ASLNYWTNEKG-D---MIIT---------GDDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~~~W~~~~~-~---~~~~---------~~~~~~~~~~~~~~~~s~L  238 (314)
                      .+..++....+.+|++++|.|.+.+.|     .+.+.|++.+. .   .+..         ..++.... ..   ...+|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L   78 (247)
T 1svz_A            3 LMTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSG-SG---TDFTL   78 (247)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ET---TEEEE
T ss_pred             cEEecCCeEEecCCCCEEEEEeCCCcccccCCCceEEEEEECCCCCceEEEEEecccCCCCCCcEEecc-CC---CEEEE
Confidence            455667778899999999999999988     68999998532 1   1111         12333221 11   13489


Q ss_pred             EEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecCC----------CeeEE-----EEccccccEeEEEEEeecc--C
Q psy15734        239 KIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLVDG----------DIFQI-----RKMSRLHMGAYLCIASNGV--V  300 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~----------~~~~~-----~~~~~~~~g~~~C~a~~~~--~  300 (314)
                      .|.+++.+|+|.|.|.|.|..+.. .....|.|...+.          +.+.+     ..+..++...+.|.+.+.+  .
T Consensus        79 ~I~~v~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~  158 (247)
T 1svz_A           79 KISRVEAEDLGIYYCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPELKKPGETVKISCKATNYAFTD  158 (247)
T ss_dssp             EESSCCGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEECCCEEECTTCCEEEEEEEESSCGGG
T ss_pred             EECCCCHHHCEEEEEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCceeecCCCcEEEEEEEcCcccCC
Confidence            999999999999999999976532 2345666655431          11121     1245556667999999875  4


Q ss_pred             CCccceE
Q psy15734        301 PSVSHRI  307 (314)
Q Consensus       301 ~~~~w~v  307 (314)
                      +.+.|.-
T Consensus       159 ~~v~W~k  165 (247)
T 1svz_A          159 YSMHWVK  165 (247)
T ss_dssp             SCEEEEE
T ss_pred             cEEEEEE
Confidence            6899965

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=99.40  E-value=8.5e-13  Score=104.26  Aligned_cols=127  Identities=14%  Similarity=0.101  Sum_probs=80.6

Q ss_pred             cCCCcceeecCccEEEEEEEeec-CC-c-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF-PA-S-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~-p~-p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ..+....+.+|+++.|.|.+.|. |. | .+.|++++...............++.|...+.|.|.++..+|+|.|+|.|.
T Consensus        18 ~~p~~~~v~~G~~v~L~C~~~g~~P~~p~~v~W~~~g~~~~~~~~~~~~~~~~g~~~~~s~L~I~~~~~~D~g~Y~C~~~   97 (231)
T 2w59_A           18 IPPSPGELYISLDAKLRCLVVNLPSDSSLSVTWTREKSGNLRPDPMVLQEHFNGTYSASSAVPVSTQDWLSGERFTCTVQ   97 (231)
T ss_dssp             ECCCHHHHHTSCCCEEEEEEEEESCCTTCEEEEECSSSSCCCCCCCEEEECTTSCEEEEEEEECCHHHHHTTCCEEEEEE
T ss_pred             eCcChhhcccCCceEEEEEEeCccCCCCeEEEEEcCCeeccccccccceECCCCcEEEEEEEEecchhccCCCEEEEEEE
Confidence            45566678899999999999995 64 5 999998754431111111111122335667789999999999999999999


Q ss_pred             eCCCCceeEEEEEEE--ecCCCeeEEEEccc----cccEeEEEEEeeccC--CCccce
Q psy15734        257 NALGETDGFIKVYVN--LVDGDIFQIRKMSR----LHMGAYLCIASNGVV--PSVSHR  306 (314)
Q Consensus       257 n~~g~~~~~~~l~V~--~~~~~~~~~~~~~~----~~~g~~~C~a~~~~~--~~~~w~  306 (314)
                      |..+.......+.+.  ....+.+.+.....    .....+.|.|.++++  +.+.|.
T Consensus        98 ~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  155 (231)
T 2w59_A           98 HEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRPRDIEIRWL  155 (231)
T ss_dssp             CTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             cCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccCCCcEEEEE
Confidence            987654333333221  11223343322111    123569999999755  478885

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=99.40  E-value=1.1e-12  Score=102.11  Aligned_cols=125  Identities=17%  Similarity=0.269  Sum_probs=80.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-Ceee---ec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-GDMI---IT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-~~~~---~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.. +....+.+|+++.|.|.+.+.|.+.+.|++++ +..+   ..         ..++.+.. ..   ....|.|.+++
T Consensus         3 v~q-p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v~   77 (212)
T 1nfd_E            3 LIQ-PSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGST-SG---TTATLTISGAQ   77 (212)
T ss_dssp             EEC-CSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEE-ET---TEEEEEETTCC
T ss_pred             eEC-CCeEEEeCCCcEEEEEecCCCCCCeEEEEEECCCCCcEEEEEeccccCCCccccEEEEe-eC---CEEEEEECcCC
Confidence            344 66778999999999999999998999999853 2211   10         12333222 11   13489999999


Q ss_pred             CCCCeEEEEEEeeCCCCc---eeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeecc-C-CCccceE
Q psy15734        245 SHQFGSYRCVAVNALGET---DGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNGV-V-PSVSHRI  307 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~---~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~~-~-~~~~w~v  307 (314)
                      .+|+|.|+|.|.|..+..   .....|.|...+  .+.+.+..    ...++...+.|.+.+.+ + +.++|..
T Consensus        78 ~~D~G~Y~C~~~n~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  151 (212)
T 1nfd_E           78 PEDEAAYYCLSSYGDNNDLVFGSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPGSATVTWKA  151 (212)
T ss_dssp             GGGCSEEEEEEEETTTTEEEECCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSSCCEEEEEE
T ss_pred             cccCEEEEEEEEcccCcccccCCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECCccEEEEEE
Confidence            999999999999732211   233456665432  23333211    12234456999999874 3 6899953

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=1.6e-12  Score=90.50  Aligned_cols=81  Identities=17%  Similarity=0.206  Sum_probs=62.2

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCcee
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDG  264 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~  264 (314)
                      ..+.+|+++.|.|.+. .|.+.+.|+++ +..+....++.+... +.   ...|.|.++..+|+|.|+|.|.|    ...
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v~W~k~-g~~~~~~~~~~~~~~-~~---~~~L~I~~v~~~D~G~Y~C~a~n----~~~   92 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEVRWTKD-GEEVVESPALLLQKE-DT---VRRLVLPAVQLEDSGEYLCEIDD----ESA   92 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCCEEEET-TEECCCBTTBEEEEC-SS---EEEEEESSCCTTTCEEEEEESSS----CEE
T ss_pred             EEEEcCCeEEEEEEec-CCCCeEEEEEC-CEECccCCCEEEEEC-CC---EEEEEECCCCcccCEEEEEEEec----CcE
Confidence            4678999999999995 88999999996 444444445444322 11   23899999999999999999988    567


Q ss_pred             EEEEEEEecCC
Q psy15734        265 FIKVYVNLVDG  275 (314)
Q Consensus       265 ~~~l~V~~~~~  275 (314)
                      .+.|.|..+|.
T Consensus        93 ~~~l~V~~~p~  103 (113)
T 2cpc_A           93 SFTVTVTEPPV  103 (113)
T ss_dssp             EEEEEEECCCC
T ss_pred             EEEEEEecCCc
Confidence            88888887663

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=99.40  E-value=7.1e-13  Score=102.87  Aligned_cols=127  Identities=12%  Similarity=0.063  Sum_probs=74.4

Q ss_pred             EcCCCcce-eecCccEEEEEEEeecCC----ceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEE
Q psy15734        179 TIPNQLEG-AFVSQTVELHCHTEAFPA----SLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       179 ~~~~~~~~-v~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      ..++.... +.+|+++.|.|.+.|.|+    +.+.|++++.... ...........++ +...+.|.|.....+|+|.|+
T Consensus         6 ~~pps~~~~~~~G~~v~L~C~~~g~~p~~~~~~v~W~k~~~~~~-~~~~~~~~~~~~g~~~~~~~l~i~~~d~~d~g~Y~   84 (207)
T 1l6x_A            6 LFPPKPKDTLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVEVH-NAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYK   84 (207)
T ss_dssp             EECCCHHHHHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEEEC-CCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred             EeCcChHHheecCCceEEEEEEecccCCCCCeEEEEEECCcccc-CcccCCceeccCCcEEEEEEEEEEHHHccCCceEE
Confidence            33444434 379999999999999763    4999999754332 2111111112222 444445666555566699999


Q ss_pred             EEEeeCCCCceeEEEEEE--EecCCCeeEEEEcc----ccccEeEEEEEeeccCC--Cccce
Q psy15734        253 CVAVNALGETDGFIKVYV--NLVDGDIFQIRKMS----RLHMGAYLCIASNGVVP--SVSHR  306 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V--~~~~~~~~~~~~~~----~~~~g~~~C~a~~~~~~--~~~w~  306 (314)
                      |.|.|..+.......+.+  .....+.+.+....    ......+.|.|.+++++  .++|.
T Consensus        85 C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~~~v~W~  146 (207)
T 1l6x_A           85 CKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSDIAVEWE  146 (207)
T ss_dssp             EEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSCCEEEEE
T ss_pred             EEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeECCCeEEEEE
Confidence            999999876533333321  12222334333221    12235799999997544  78895

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=99.40  E-value=2.8e-12  Score=102.07  Aligned_cols=127  Identities=20%  Similarity=0.203  Sum_probs=83.8

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+...+....+.+|++++|.|.+.+.|.+.+.|++++.    ..+..         ..++.+.. ..   ...+|.|.++
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v   78 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNLHXYQQKSHESPRLLIKYASQSISGIPSRFSGSG-SG---TDFTLSINSV   78 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ET---TEEEEEESSC
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceEEEEEeCCCCCceEEEEeccccCCCCCCCEEEec-CC---CEEEEEECCC
Confidence            45667777889999999999999999999999998531    11111         12333221 11   1348999999


Q ss_pred             CCCCCeEEEEEEeeCCCCc-eeEEEEEEEecCC-----------C-eeEEE---EccccccEeEEEEEeecc--CCCccc
Q psy15734        244 LSHQFGSYRCVAVNALGET-DGFIKVYVNLVDG-----------D-IFQIR---KMSRLHMGAYLCIASNGV--VPSVSH  305 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~-----------~-~~~~~---~~~~~~~g~~~C~a~~~~--~~~~~w  305 (314)
                      +.+|+|.|.|.|.|..+.. .....|.|...+.           + .+...   .+..++...+.|.+.+.+  .+.+.|
T Consensus        79 ~~~D~G~Y~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~~~~v~W  158 (242)
T 2znx_A           79 ETEDFGMYFCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGPSLVKPSQTLSLTCSVTGDSITSDYXSX  158 (242)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC---------------CCEEEEECCSEECTTSCEEEEEEEESSCGGGSCEEE
T ss_pred             ChHHCEEEEEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCcceecCCCeEEEEEEEEccccCCcceee
Confidence            9999999999999976432 2345666765432           1 12111   234455567999999875  478889


Q ss_pred             eE
Q psy15734        306 RI  307 (314)
Q Consensus       306 ~v  307 (314)
                      .-
T Consensus       159 ~k  160 (242)
T 2znx_A          159 IR  160 (242)
T ss_dssp             EE
T ss_pred             Ee
Confidence            64

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.40  E-value=3.2e-12  Score=87.95  Aligned_cols=91  Identities=9%  Similarity=0.125  Sum_probs=68.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC----------ceeeeEeeCCeeeEEEEEEeecC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD----------DYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----------~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +|.|..++.+..+.+|+++.|.|.+.+  .|.+.|+++ +..+..+.          ++.+.  .++  ..++|.|.++.
T Consensus         8 ~~~~~~~l~d~~v~eG~~a~f~C~vs~--~p~v~W~kn-G~~l~~~~~~~~~~~~~~r~~i~--~~g--~~~~L~I~~v~   80 (112)
T 2e6q_A            8 TARLVAGLEDVQVYDGEDAVFSLDLST--IIQGTWFLN-GEELKSNEPEGQVEPGALRYRIE--QKG--LQHRLILHAVK   80 (112)
T ss_dssp             CCCEEECCCCEEEETTCEEEEEEEESS--CCCCEEEES-SCBCCSSCCCTTSCTTSCEEEEC--CBT--TEEEEEEESCC
T ss_pred             CcEEecCCCCeEEcCCCcEEEEEEECC--CCeEEEEEC-CEECccCcccccccccccEEEEE--eCC--cEEEEEECCCC
Confidence            456777888899999999999999998  788999997 44454444          44443  222  13489999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      .+|+|.|+|...+   ....+..|.|...|.
T Consensus        81 ~~D~G~Y~~~~~~---~~~ssA~L~V~~~p~  108 (112)
T 2e6q_A           81 HQDSGALVGFSCP---GVQDSAALTIQESSG  108 (112)
T ss_dssp             STTCSEEEEEEET---TEEEEEEEEEECSSC
T ss_pred             HHHCccEEEEEEC---CeeEEEEEEEeCCCc
Confidence            9999999875543   346788898987753

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=99.40  E-value=2.6e-12  Score=100.77  Aligned_cols=123  Identities=14%  Similarity=0.106  Sum_probs=79.6

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCC-Cee---eec----------------CCceeeeEeeCCeeeEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDM---IIT----------------GDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~---~~~----------------~~~~~~~~~~~~~~~~s~L~  239 (314)
                      +....+.+|+++.|.|.+.+.|  .+.+.|++.+ +..   +..                ..++.+.....  ....+|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~   84 (222)
T 1q9r_B            7 SGGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNS--QSILYLQ   84 (222)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETT--TTEEEEE
T ss_pred             CCceeEcCCCEEEEEEEecCccCCCCcEEEEEECCCCCcEEEEEEccCCcccccccCcccCCceEEEEECC--CCeEEEE
Confidence            3456789999999999999876  7899999853 211   100                12222222111  1134899


Q ss_pred             EeecCCCCCeEEEEEEeeCCC-----CceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        240 IRSILSHQFGSYRCVAVNALG-----ETDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g-----~~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      |.+++.+|+|.|.|.+.|..+     .......|.|...+  .+.+.+..    +..++...+.|.|.+. |.| .+.|.
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  164 (222)
T 1q9r_B           85 MNTLRAEDSATYYCARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTVTWN  164 (222)
T ss_dssp             ECSCCGGGCEEEEEEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             ECcCCcccCeEEEEEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCCCEEEEe
Confidence            999999999999999999764     22234566666422  23333322    2234455799999986 777 88885

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.39  E-value=5.3e-12  Score=86.24  Aligned_cols=93  Identities=16%  Similarity=0.260  Sum_probs=70.3

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+ +.+.+.+.|++++..         +..+.++.+..++ ....|.|.+++.+|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v~W~k~~~~---------l~~~~~~~~~~~~-~~~~L~I~~v~~~D   74 (103)
T 2dku_A            6 SGANCFTEELTNLQVEEKGTAVFTCKT-EHPAATVTWRKGLLE---------LRASGKHQPSQEG-LTLRLTISALEKAD   74 (103)
T ss_dssp             CCCCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCCEEEESSCB---------CCSSSSEEEEEET-TEEEEEEESCCTTT
T ss_pred             CCCCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeEEEEeCCEE---------CCCCCeEEEEeCC-CEEEEEECCCCccc
Confidence            357888888999999999999999995 667789999995532         2234466555333 22379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+   +.....+.|.|..+|.
T Consensus        75 ~G~Y~C~~---g~~~~~~~l~V~~~p~   98 (103)
T 2dku_A           75 SDTYTCDI---GQAQSRAQLLVQGRRS   98 (103)
T ss_dssp             CSEEEEEC---SSCBCCEEEEEECSCC
T ss_pred             CEEEEEEe---CCceEEEEEEEeCccC
Confidence            99999983   4455567888877654

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=99.39  E-value=2.6e-13  Score=103.26  Aligned_cols=114  Identities=18%  Similarity=0.202  Sum_probs=78.0

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecC-------------CceeeeE--eeCCeeeEEEEEEeecCCCCC
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG-------------DDYEDSR--LINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~-------------~~~~~~~--~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      .+.+.+|+++.|.|.+.+.|.+.+.|++++.......             .++....  ..++   ..+|.|.+++.+|+
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~i~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~---~~~L~i~~v~~~D~   80 (184)
T 2ny1_B            4 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQG---NFPLIIKNLKIEDS   80 (184)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSCTTGGGEECCGGGGGGT---BCCEEECSCCGGGC
T ss_pred             cEEEeCCCCEEEEEEEcCCCceEEEEEeCCccceEEecCceEecCChhhCCccccccccccCC---eEEEEEecCCHHHC
Confidence            3468899999999999999999999999865433221             1111110  0111   23699999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccce
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      |.|+|.+.|..+    .+.|.|...+.+.-  ..+..++...+.|.+.+.|.|.+.|.
T Consensus        81 G~Y~C~~~~~~~----~~~l~V~~~~~~~~--~~v~~g~~~~l~C~~~~~p~~~v~W~  132 (184)
T 2ny1_B           81 DTYICEVEDQKE----EVQLLVFGLTANSD--THLLQGQSLTLTLESPPGSSPSVQCR  132 (184)
T ss_dssp             EEEEEEETTEEE----EEEEEEEEEEESSC--SEEETTCCEEEEEECCTTCCCEEEEE
T ss_pred             EEEEEEEEcCCC----cEEEEEEEecCCCC--ceeecCCCEEEEEEcCCCCCCEEEEE
Confidence            999999998754    44555543211100  13345566679999999999999995

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=99.38  E-value=5.7e-12  Score=99.05  Aligned_cols=122  Identities=16%  Similarity=0.105  Sum_probs=79.0

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCC-Cee---eec--------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDM---IIT--------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~---~~~--------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+.+|++++|.|.+.+.|  .+.+.|++.+ +..   +..              ..++.+.....  ....+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I~~   85 (225)
T 1op3_H            8 GGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDL--EDFVYLQMHK   85 (225)
T ss_dssp             CCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETT--TTEEEEEECS
T ss_pred             CCeEecCCCCEEEEEEecCcccCCceEEEEEeCCCCCcEEEEEEccCCCccccCcccCCceEEEecCC--CCEEEEEECC
Confidence            346789999999999999877  7899999853 211   110              12232222111  1135899999


Q ss_pred             cCCCCCeEEEEEEeeCCC-----C---ceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        243 ILSHQFGSYRCVAVNALG-----E---TDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g-----~---~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      ++.+|+|.|.|.+.|..|     .   ....+.|.|...+  .+.+.+..    +..++...+.|.+.++ |.| .++|.
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  165 (225)
T 1op3_H           86 MRVEDTAIYYCARKGSDRLSDNDPFDAWGPGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTVSWN  165 (225)
T ss_dssp             CCGGGCEEEEEEEECCSSCCSSCCEEEECCCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSCCEEECC
T ss_pred             CChhhCEEEEEEEecCCCccccccceeecCCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCCeEEEEe
Confidence            999999999999999865     1   1234577777532  23333321    2233445699999987 555 88884

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=99.38  E-value=3.8e-12  Score=96.66  Aligned_cols=108  Identities=13%  Similarity=0.162  Sum_probs=76.9

Q ss_pred             ceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        185 EGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..+.+|+++.|.|.+.+.|.|  .+.|+++ +..+........         ...|.|.  +.+|+|.|+|.|.|   ..
T Consensus         8 ~~v~~G~~v~l~C~~~~~~~p~~~~~W~k~-~~~l~~~~~~~~---------~~~l~i~--~~~d~G~Y~C~~~n---~~   72 (184)
T 3b5h_A            8 TVEDLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALPGQ---------KTEFKVD--SDDQWGEYSCVFLP---EP   72 (184)
T ss_dssp             EEEEETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCCCS---------EEEEEEC--GGGCCEEEEEEEES---TT
T ss_pred             EEEecCCCEEEEEECCCCCCCceEEEEEeC-CEEeecccccCC---------cEEEEEe--chhhCeEEEEEEEC---Cc
Confidence            457899999999999998887  8999996 444433322211         2366666  68999999999998   33


Q ss_pred             eeEEEEEEEecCCCeeEE--EEccccccEeEEEEEeecc-CCCccceE
Q psy15734        263 DGFIKVYVNLVDGDIFQI--RKMSRLHMGAYLCIASNGV-VPSVSHRI  307 (314)
Q Consensus       263 ~~~~~l~V~~~~~~~~~~--~~~~~~~~g~~~C~a~~~~-~~~~~w~v  307 (314)
                      ...+.|.|..+|.-....  ..+..++...+.|.+.+.| .|.+.|..
T Consensus        73 ~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i~W~~  120 (184)
T 3b5h_A           73 MGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYK  120 (184)
T ss_dssp             SCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEE
T ss_pred             CcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeEEEEE
Confidence            467777787654322111  2345556677999999999 78999976

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=99.38  E-value=5.5e-12  Score=102.75  Aligned_cols=123  Identities=17%  Similarity=0.133  Sum_probs=81.5

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-e-e--eec--------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D-M--IIT--------------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~-~--~~~--------------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|++++|.|.+.+.|  .+.+.|++.+. . .  +..              ..++.+.....+  ...+|.|.
T Consensus        33 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~sL~I~  110 (282)
T 1qok_A           33 SGAELVRSGTSVKLSCTASGFNIKDSYMHWLRQGPEQGLEWIGWIDPENGDTEYAPKFQGKATFTTDTSS--NTAYLQLS  110 (282)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT--TEEEEEEC
T ss_pred             CCCEEEeCCCeEEEEEeccCCCCCCceEEEEEeCCCCCcEEEEEEecCCCccccCchhcCcEEEEEecCC--CeEEEEEC
Confidence            4456789999999999999875  68999998542 1 1  110              123322221111  13489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCc-----eeEEEEEEEecC-------------CCeeEEE----EccccccEeEEEEEeecc
Q psy15734        242 SILSHQFGSYRCVAVNALGET-----DGFIKVYVNLVD-------------GDIFQIR----KMSRLHMGAYLCIASNGV  299 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~-------------~~~~~~~----~~~~~~~g~~~C~a~~~~  299 (314)
                      +++.+|+|.|.|.+.|..|..     ...+.|.|...+             ...+...    .+..++...+.|.+.+.+
T Consensus       111 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~  190 (282)
T 1qok_A          111 SLTSEDTAVYYCNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV  190 (282)
T ss_dssp             SCCGGGCEEEEEEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             cCChhhCEEEEEEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC
Confidence            999999999999999987621     133467776653             1222221    345566678999999998


Q ss_pred             CCCccceE
Q psy15734        300 VPSVSHRI  307 (314)
Q Consensus       300 ~~~~~w~v  307 (314)
                       +.+.|.-
T Consensus       191 -~~v~W~k  197 (282)
T 1qok_A          191 -SYMHWFQ  197 (282)
T ss_dssp             -SCCEEEE
T ss_pred             -ceEEEEE
Confidence             8999965

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=99.38  E-value=2.2e-12  Score=97.71  Aligned_cols=116  Identities=14%  Similarity=0.110  Sum_probs=79.1

Q ss_pred             CcceeecCccEEEEEEEee-cCCceeEEecCCCeeeec----------CCce--eeeE-eeCCeeeEEEEEEeecCCCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIIT----------GDDY--EDSR-LINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~----------~~~~--~~~~-~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      ..+.+.+|++++|.|.+.+ .+.+.+.|++.+...+..          ...|  +... ..++     +|.|.+++.+|+
T Consensus         7 ~~v~v~~G~~vtL~c~~~~~~~~~~i~W~k~~~~~i~~~~~~~~~~~~~~~~~~R~~l~~~~~-----sL~I~~v~~~D~   81 (180)
T 2dru_A            7 PNVNAITGSNVTLTILKHPLASYQRLTWLHTTNQKILEYFPNGKKTVFESVFKDRVDLDKTNG-----ALRIYNVSKEDR   81 (180)
T ss_dssp             CEEEEETTSCEEECCCSSCCCSCSEEEEESSSSCEEEEECSSSCEEECSSTTTTTEEECTTTC-----CEEECSCCGGGC
T ss_pred             ceEEEEeCCCEEEeCCCCCCCceeEEEEEecCCeEEEEEECCCCeeEcchhcCCeEEEeCCCc-----cEEEcCCCHHHC
Confidence            4567899999999999865 447899999952222110          0111  1111 2233     899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEecCCCeeEEEEccccccEeEEEEEeeccCCCccceE
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRI  307 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a~~~~~~~~~w~v  307 (314)
                      |.|+|.+.+.. .....+.|.|..++..+.....   .....++|.+.+.|.|.+.|..
T Consensus        82 G~Y~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~~---~~~v~L~C~~~~gp~p~i~W~~  136 (180)
T 2dru_A           82 GDYYMRMLHET-EDQWKITMEVYEMVSKPMIYWE---CSNATLTCEVLEGTDVELKLYQ  136 (180)
T ss_dssp             EEEEEEEESSS-EEEEEEEEEEECCCCCCEEEEE---GGGTEEEEECSSCTTCEEEEEE
T ss_pred             eEEEEEEEcCC-eEEEEEEEEEECCCCCCEEEec---CCCEEEEEEeCCCCCCEEEEEE
Confidence            99999998876 5677788888776443332222   2346799999444888999953

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=99.38  E-value=3.7e-12  Score=87.82  Aligned_cols=92  Identities=22%  Similarity=0.356  Sum_probs=70.1

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.  +.+.|++++..         +..+.++.+..++. ...|.|.+++.+|
T Consensus         6 ~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~--p~v~W~k~~~~---------~~~~~~~~~~~~~~-~~~L~I~~v~~~D   73 (108)
T 2dm7_A            6 SGPARFTQDLKTKEASEGATATLQCELSKV--APVEWKKGPET---------LRDGGRYSLKQDGT-RCELQIHDLSVAD   73 (108)
T ss_dssp             CCCCCBCSCCBCCEEETTSCEEEEEEBSSS--CCCEEESSSSB---------CCSSSSCEEEEETT-EEEEEESSCCTTT
T ss_pred             CCCCeeeecCCcEEEeCCCcEEEEEEeCCC--CeeEEEECCEE---------CCCCCCEEEEecCC-EEEEEECCCCccc
Confidence            467888888899999999999999999765  68999995532         22345665554432 3379999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEEeCCc
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVVVPPR  125 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~~~p~  125 (314)
                      +|.|+|.+.+   ......|.|..+|.
T Consensus        74 ~G~Y~C~a~n---~~~~~~l~V~~~p~   97 (108)
T 2dm7_A           74 AGEYSCMCGQ---ERTSATLTVRALPA   97 (108)
T ss_dssp             CSEEEEEETT---EEEEEECEEECCCS
T ss_pred             CEEEEEEEcC---CEEEEEEEEecCCH
Confidence            9999999943   45667788877554

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=99.37  E-value=9e-13  Score=104.17  Aligned_cols=128  Identities=18%  Similarity=0.260  Sum_probs=70.5

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-ee---eec---------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-DM---IIT---------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~~---~~~---------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +.+..++....+.+|+++.|.|.+.+.|.+.+.|++++. ..   +..         ..++....    .....+|.|.+
T Consensus        24 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~----~~~~~~L~I~~   99 (233)
T 3bqu_C           24 TTVTQSPASLSMSIGEKVTIRCITSTDIDDDMNWYQQKPGEPPRLLISDGNTLRPGVPSRFSSSG----YGTDFVFTIEN   99 (233)
T ss_dssp             CCEEEECSBC-------CCEEEEEEEEESSCEEEEEECTTSCCEEEECTTSCBCTTSCTTCCCCE----EEEEEEEC---
T ss_pred             eeEEEcCCeEEEecCCCEEEEEecCCcCCCeEEEEEECCCCCcEEEEEcCCccCCCCCccEEeec----cCCEEEEEECC
Confidence            344555667789999999999999999989999998532 11   110         11222211    12345899999


Q ss_pred             cCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEEc----cccccEeEEEEEeeccCC--CccceE
Q psy15734        243 ILSHQFGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      ++.+|+|.|.|.|.|..+.. .....|.|.... .+.+.+...    ..++...+.|.+.+.+++  .++|..
T Consensus       100 v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  172 (233)
T 3bqu_C          100 MLSEDVADYYCLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  172 (233)
T ss_dssp             --CCCCSEEEEEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCEEEEEEE
T ss_pred             CCHHHCEEEEEEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCCceEEEEEE
Confidence            99999999999999976533 223456665533 344443221    124456799999996654  688853

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=99.37  E-value=1.3e-12  Score=110.35  Aligned_cols=108  Identities=23%  Similarity=0.257  Sum_probs=63.8

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      ++..+.+.+|+++.|.|.+.+ |.+.+.|+++++..+..     ...+.++.+ .+    ++|.|.+++.+|+|.|+|.+
T Consensus       252 ~~~~v~v~~G~~~~l~C~~~g-p~p~i~W~~~~~~~~~~-----~~~~~r~~~-~~----~~L~I~~v~~~D~G~Y~C~a  320 (361)
T 2xot_A          252 KESAWEAHLGDTLTIRCDTKQ-QGMTKVWVSPSNEQVLS-----QGSNGSVSV-RN----GDLFFKKVQVEDGGVYTCYA  320 (361)
T ss_dssp             CCCCCEEETTCCEEECCCCSS-TTCEEEEECTTSCBCCS-----CCSSSSEEE-ET----TEEEESSCCTTSCEEEEEEE
T ss_pred             cccCceecCCCeEEEEeEeeC-CCCeEEEEeCCCeeEee-----cccCCceEe-ec----CeEEEeecCcccCEEEEEEE
Confidence            456789999999999999998 88899999966543211     122335665 32    27999999999999999999


Q ss_pred             ecC-CCcceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceE
Q psy15734        107 NTV-PMTSQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVA  158 (314)
Q Consensus       107 ~~~-~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~  158 (314)
                      .|. +..+..+.|.|...+             ..|+.+.|.|.+.|.|.|.+.
T Consensus       321 ~N~~g~~~~~~~l~V~~~~-------------~~g~~~~l~C~~~g~P~P~i~  360 (361)
T 2xot_A          321 MGETFNETLSVELKVYNFT-------------LHGHHDTLNAAADPWSHPQFE  360 (361)
T ss_dssp             ECSSCEEEEEEEEEEESSC-------------CC-------------------
T ss_pred             ecCCCccEEEEEEEEEeee-------------ccCCceEEEEEeCCCCCCccc
Confidence            876 344455566664321             467899999999999998763

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=99.37  E-value=7e-12  Score=101.93  Aligned_cols=128  Identities=14%  Similarity=0.143  Sum_probs=84.0

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC-e--e-ee---c-----------CCceeeeEeeCCeeeEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG-D--M-II---T-----------GDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~--~-~~---~-----------~~~~~~~~~~~~~~~~s~  237 (314)
                      +.+..++....+.+|+++.|.|.+.+.|.+.+.|++.+. .  . +.   .           ..++.+... .  ....+
T Consensus        25 ~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~-~--~~~~s  101 (279)
T 2wbj_D           25 AVVSQHPSWVISKSGTSVKIECRSLDFQATTMFWYRQFPKQSLMLMATSNEGSKATYEQGVEKDKFLINHA-S--LTLST  101 (279)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSSCEEEEEEEEECSSSCCEEEEEEESSSCCCCCSSSCSSSEEEEEC-S--SSEEE
T ss_pred             ceEEeCCCeEEecCCCeEEEEEEeCCCCCCeEEEEEeCCCCCeEEEEEEecCCcceecCCccCCcEEEEeC-C--CCEEE
Confidence            445566777889999999999999988999999998641 1  1 10   0           112222211 1  12358


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCCC------ceeEEEEEEEec----CCCeeEEEEcc-----ccccEeEEEEEeeccC--
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALGE------TDGFIKVYVNLV----DGDIFQIRKMS-----RLHMGAYLCIASNGVV--  300 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g~------~~~~~~l~V~~~----~~~~~~~~~~~-----~~~~g~~~C~a~~~~~--  300 (314)
                      |.|.+++.+|+|.|+|.+.|..+.      ....+.|.|...    ..+.+.+....     .++...+.|.+.++++  
T Consensus       102 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  181 (279)
T 2wbj_D          102 LTVTSAHPEDSSFYICSARDLTSGANNEQFFGPGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  181 (279)
T ss_dssp             EEESSCCGGGCEEEEEEEEETTCBTSCCEEECCCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBSSC
T ss_pred             EEEccCCccCCEEEEEEEcccccCCccceeeCCCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcCCC
Confidence            999999999999999999995321      123356777652    13444443221     2345679999999755  


Q ss_pred             CCccce
Q psy15734        301 PSVSHR  306 (314)
Q Consensus       301 ~~~~w~  306 (314)
                      +.+.|.
T Consensus       182 ~~v~W~  187 (279)
T 2wbj_D          182 VELSWW  187 (279)
T ss_dssp             EEEEEE
T ss_pred             cEEEEE
Confidence            588885

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=99.37  E-value=6e-12  Score=86.03  Aligned_cols=90  Identities=13%  Similarity=0.166  Sum_probs=64.5

Q ss_pred             CCCCCceecCCcc-eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecC-cCEEEEeCCceeEEEEEeeec
Q psy15734         18 KPDMPRFAEPVAN-VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQN-KRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        18 ~~~~p~~~~~~~~-~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ...+|.|+..+.. +.+.+|+++.|.|.+ +.+.+.+.|++++. .+.        .+ .++.+..++. ...|.|.+++
T Consensus        12 ~~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v~W~k~g~-~l~--------~~~~~~~~~~~~~-~~~L~I~~v~   80 (104)
T 1pd6_A           12 EKKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEVKWLKNGQ-EIQ--------MSGSKYIFESIGA-KRTLTISQCS   80 (104)
T ss_dssp             CSTTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCCEEEESSS-EEC--------CCSSSSEEEEETT-EEEEEECSCS
T ss_pred             ccCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEEEEEECCE-ECC--------CCCCeEEEEecCC-EEEEEECCCC
Confidence            3467888887666 889999999999999 66778899999553 321        22 4555554333 3379999999


Q ss_pred             CCCCeEEEEEEecCCCcceeEEEEEE
Q psy15734         96 ETDRGWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      .+|+|.|+|.+.+   ......|.|.
T Consensus        81 ~~D~G~Y~C~a~~---~~~~~~l~V~  103 (104)
T 1pd6_A           81 LADDAAYQCVVGG---EKCSTELFVK  103 (104)
T ss_dssp             SSSCEEEEEEETT---EEECCEEEEE
T ss_pred             cccCEEEEEEECC---CcEEEEEEEe
Confidence            9999999999932   3333445543

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=99.36  E-value=4e-12  Score=103.15  Aligned_cols=165  Identities=13%  Similarity=0.134  Sum_probs=79.1

Q ss_pred             ceeEEecCceEEEEEEecccCCC-ceEEEcCCC-cee-ecC--------------CeeC---------------------
Q psy15734        133 TDVVVREGTEVTLECSAVGYPEP-YVAWRREDG-KAI-NYN--------------GELV---------------------  174 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p~p-~~~W~~~~~-~~~-~~~--------------~~~~---------------------  174 (314)
                      ....+.+|+.+.|.|.+.. +.| .+.|..... ..+ ..+              +.+.                     
T Consensus         7 ~~~~V~~G~sv~l~Cs~~c-~~p~~~~~~t~l~~~~~~~~g~~~~~~~l~~v~~~~~y~C~~~~~~~~~~~~v~l~V~~~   85 (291)
T 1mq8_A            7 SKVILPRGGSVLVTCSTSC-DQPKLLGIETPLPKKELLLPGNNRKVYELSNVQEDSQPMCYSNCPDGQSTAKTFLTVYWT   85 (291)
T ss_dssp             SEEEECTTCEEEEEEEECC-SSCSEEEEECSSCCCCCCCSCSSEEEEEEESCCSCCCCEEEEECSSCEEEEECEEEECBC
T ss_pred             CccEEcCCCeEEEEEeCCC-CCCccceEEecCCCcccccCCCceEEEEEEecccCCeEEEEEEcCCccEEEEEEEEEecC
Confidence            5667899999999999864 444 488873211 111 111              1000                     


Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc---eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS---LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      |-.+.+.+....+.+|+.++|.|.+.|.+++   .|.|++++..+.....      ...  ...++|.+...+.+|.+.|
T Consensus        86 P~~v~I~~~~~~~~~G~~~~LtC~v~g~~P~~~l~itW~kg~~~l~~~~~------~~~--~~~~~l~~~~~~~D~g~~~  157 (291)
T 1mq8_A           86 PERVELAPLPSWQPVGKNLTLRCQVEGGAPRANLTVVLLRGEKELKREPA------VGE--PAEVTTTVLVRRDHHGANF  157 (291)
T ss_dssp             CSCCCBCCCCSBCCSSCCCEEEEEECCCBSTTTEEEEEESSSSEEEEEEC------CBT--TEEEEEECCCSSSCSSCEE
T ss_pred             CCCCEEecCCccccCCCCEEEEEEecCccCCCCcEEEEEECCEEeecccC------CCC--CceEEEEeeeeeccCCceE
Confidence            1122222333457889999999999886543   5899997543322210      011  1234777777777777799


Q ss_pred             EEEEeeCCCC--------ceeEEEEEEEecCCCeeEEE---EccccccEeEEEEEeeccCC---Cccce
Q psy15734        252 RCVAVNALGE--------TDGFIKVYVNLVDGDIFQIR---KMSRLHMGAYLCIASNGVVP---SVSHR  306 (314)
Q Consensus       252 ~C~a~n~~g~--------~~~~~~l~V~~~~~~~~~~~---~~~~~~~g~~~C~a~~~~~~---~~~w~  306 (314)
                      +|+|.|..+.        .+....|.|...|.....+.   ....++...++|.+.+.+++   .+.|.
T Consensus       158 ~C~A~~~l~~~g~~l~~~~s~~~~L~V~~~P~~~~~~~~p~~l~eG~~v~l~C~~~g~~P~~~~~v~w~  226 (291)
T 1mq8_A          158 SCRTELDLRPQGLELFENTSAPYQLQTFVLPATPPQLVSPRVLEVDTQGTVVCSLDGLFPVSEAQVHLA  226 (291)
T ss_dssp             EEEEEEECGGGTSCEEEECCCCEECBC------------------------------------------
T ss_pred             EEEEEecCCccCCccccccccceEEEEEecCCCCceecCCcCccCCCeEEEEEEcCCCCCCcccEEEEE
Confidence            9999997652        35567788888754433322   23445556799999987654   47775

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=99.36  E-value=5e-12  Score=101.16  Aligned_cols=128  Identities=16%  Similarity=0.222  Sum_probs=83.1

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecC-----CceeEEecCCC-e---eeec---------CCceeeeEeeCCeeeEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFP-----ASLNYWTNEKG-D---MIIT---------GDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~~~W~~~~~-~---~~~~---------~~~~~~~~~~~~~~~~s~  237 (314)
                      +.+..++....+.+|++++|.|.+.+.|     .+.+.|++++. .   .+..         ..++.... ..   ...+
T Consensus        35 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~  110 (252)
T 3bkj_L           35 VLMTQTPLSLPVNLGEQASISCRSSQSIVHSNGHTYLEWYLQRPGQSPKLLIYQVSTRFSGVPDRFSGSG-SG---TDFT  110 (252)
T ss_dssp             CCEEEECSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE-ET---TEEE
T ss_pred             cEEEeCCceEEEeCCCcEEEEEEcCCCccccCCCCcEEEEEECCCCCcEEEEEcCCcccCCcCCceEEEc-cC---CEEE
Confidence            3455556677899999999999999988     68999998542 1   1110         12222221 11   1348


Q ss_pred             EEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC-CCeeEEEE----ccccccEeEEEEEeeccCC--CccceE
Q psy15734        238 LKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLVD-GDIFQIRK----MSRLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~-~~~~~~~~----~~~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      |.|.+++.+|+|.|+|.|.|..+.. .....|.|.... .+.+.+..    +..++...++|.+.+.+++  .+.|..
T Consensus       111 L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~~~~v~W~k  188 (252)
T 3bkj_L          111 LRISRVEAEDLGVYYCFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKDINVKWKI  188 (252)
T ss_dssp             EEESSCCGGGCEEEEEEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             EEECCCCcccCEEEEEEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCCCcEEEEEE
Confidence            9999999999999999999986532 233456665432 24444322    1233456799999996544  588853

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=99.36  E-value=6.3e-13  Score=90.19  Aligned_cols=90  Identities=18%  Similarity=0.310  Sum_probs=65.3

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      +..+|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++.. +.        .... .. .  .....|.|.+++.+
T Consensus         8 ~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~g~~-~~--------~~~~-~~-~--~~~~~L~i~~v~~~   74 (99)
T 2yr3_A            8 MEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRITWLLNGQP-IQ--------YARS-TC-E--AGVAELHIQDALPE   74 (99)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCCEEEESSSB-CS--------SCCC-EE-E--TTEEEEEECSCCTT
T ss_pred             cccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeEEEEECCEE-Cc--------ccce-Ee-e--CCeEEEEECCCChh
Confidence            34578888888999999999999999999888889999995432 21        1111 11 1  11247999999999


Q ss_pred             CCeEEEEEEecC-CCcceeEEEEE
Q psy15734         98 DRGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        98 d~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      |+|.|+|.+.|. +.....+.|.|
T Consensus        75 D~G~Y~C~a~N~~g~~~~~~~l~V   98 (99)
T 2yr3_A           75 DHGTYTCLAENALGQVSCSAWVTV   98 (99)
T ss_dssp             CCBCEEEEEECSSCEEEEECCEEE
T ss_pred             hCEEEEEEEEECCCeEEEEEEEEE
Confidence            999999999875 33344444444

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=99.36  E-value=5.7e-12  Score=100.65  Aligned_cols=128  Identities=16%  Similarity=0.157  Sum_probs=83.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+..++....+.+|+++.|.|.+.+.|.+.+.|++.+.    ..+..         ..++.... ..   ...+|.|.++
T Consensus         6 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i~W~k~~~~~~~~~l~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v   81 (250)
T 3esu_F            6 VLIQSTSSLSASLGDRVTISCRASQDIRNYLNWYQQKPDGTVKLLIYYTSRLQSGVPSRFSGSG-SG---TDYSLTISNL   81 (250)
T ss_dssp             CEECSCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE-ET---TEEEEEESSC
T ss_pred             eEEecCCEEEeeCCCcEEEEEEecccCCceEEEEEECCCCCCEEEEEEeCCCCCCCCCCEEEeC-CC---CEEEEEEccC
Confidence            45667777889999999999999999999999998531    11111         12222211 11   1348999999


Q ss_pred             CCCCCeEEEEEEeeCCCCc-eeEEEEEEEecC------------------CCeeEE---EEccccccEeEEEEEeecc--
Q psy15734        244 LSHQFGSYRCVAVNALGET-DGFIKVYVNLVD------------------GDIFQI---RKMSRLHMGAYLCIASNGV--  299 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~------------------~~~~~~---~~~~~~~~g~~~C~a~~~~--  299 (314)
                      +.+|+|.|.|.|.|..+.. .....|.|...+                  ...+..   ..+..++...+.|.+.+.+  
T Consensus        82 ~~~D~G~Y~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~  161 (250)
T 3esu_F           82 EQEDIGTYFCQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPELVKPGASVKISCKDSGYAFS  161 (250)
T ss_dssp             CGGGCEEEEEEECSSSSCEECCCEEEEEC------------------------CEECCCEEECTTCCEEEEEECCSTTGG
T ss_pred             ChhhCEEEEEEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecCCceEEcCCceEEEEEEecCCccc
Confidence            9999999999999976542 233455565421                  111111   1234555667999999876  


Q ss_pred             CCCccceEE
Q psy15734        300 VPSVSHRIM  308 (314)
Q Consensus       300 ~~~~~w~v~  308 (314)
                      .+.+.|...
T Consensus       162 ~~~v~W~k~  170 (250)
T 3esu_F          162 SSWMNWVKQ  170 (250)
T ss_dssp             GSEEEEEEE
T ss_pred             CCEEEEEEE
Confidence            678899654

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=99.36  E-value=1.7e-12  Score=101.06  Aligned_cols=125  Identities=12%  Similarity=0.042  Sum_probs=82.5

Q ss_pred             cCCCcceeecCccEEEEEEEeec-------CCceeEEecCCCee-----eec-----------CCceeeeEeeCCeeeEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF-------PASLNYWTNEKGDM-----IIT-----------GDDYEDSRLINGYSCHM  236 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~-------p~p~~~W~~~~~~~-----~~~-----------~~~~~~~~~~~~~~~~s  236 (314)
                      ..+....+.+|+++.|.|.+.+.       +.+.+.|++++...     +..           ..++.+  ..+......
T Consensus         5 ~~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~   82 (214)
T 2zg1_A            5 QVQKSVTVQEGLCVLVPCSFSYPWRSWYSSPPLYVYWFRDGEIPYYAEVVATNNPDRRVKPETQGRFRL--LGDVQKKNC   82 (214)
T ss_dssp             ECCSEEEEETTCCEEECCEEECCCCCCSCCCCEEEEEEETTCCGGGCCBSEESCTTSCBCTTTTTTEEE--CSCGGGTBC
T ss_pred             eCCcEEEEecCccEEEeeeeecCCcccCCCCceEEEEEecCCCCcccceEecCCcccccCccccCceEE--eccCCCCeE
Confidence            34566789999999999999864       57899999975421     110           112221  111101123


Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCc----eeEEEEEEEecCC-CeeEEE-EccccccEeEEEEEeec----cCCCccce
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGET----DGFIKVYVNLVDG-DIFQIR-KMSRLHMGAYLCIASNG----VVPSVSHR  306 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~----~~~~~l~V~~~~~-~~~~~~-~~~~~~~g~~~C~a~~~----~~~~~~w~  306 (314)
                      +|.|.+++.+|+|.|.|.+.+..+..    ...+.|.|...+. +.+... .+..++...++|.|.+.    |+|.++|.
T Consensus        83 sL~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~G~~v~L~C~~~~~~~~~p~p~v~W~  162 (214)
T 2zg1_A           83 SLSIGDARMEDTGSYFFRVERGRDVKYSYQQNKLNLEVTALIEKPDIHFLEPLESGRPTRLSCSLPGSCEAGPPLTFSWT  162 (214)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTTEEEECCSSCEEEEEECCCCCCEEC--CCCCTTCCEEEEEECTTCCSCSSCCEEEEE
T ss_pred             EEEEccCCHhhCceEEEEEEcCCCceeeecCCceEEEEecCCCCCceecCccccCCCeEEEEEEeccCCCCCCCceEEEe
Confidence            79999999999999999999976322    2467788877553 333222 23445556799999874    77899995

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=99.36  E-value=4.1e-12  Score=100.69  Aligned_cols=126  Identities=16%  Similarity=0.135  Sum_probs=82.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC--ee--ee------------cCCceeeeEeeCCeeeEEEEEEe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG--DM--II------------TGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~--~~--~~------------~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +...+....+.+|++++|.|. .+.|.+.+.|++++.  ..  +.            ...++.+.. .+.  ...+|.|.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~~--~~~~L~I~   78 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNMYWYRQDTGHGLRLIHYSYGAGSTEKGDIPDGYKASR-PSQ--ENFSLILE   78 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEEEEEEEETTTEEEEEEEESSTTCCEECSSCTTCEEEC-CSS--SBCEEEES
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccEEEEEECCCCCcEEEEEEecCcceeCCCccceEEEEc-cCC--ceEEEEEe
Confidence            455677788999999999999 788999999998521  10  10            012222221 111  12389999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCc-----eeEEEEEEEecCC----------CeeEE----EEccccccEeEEEEEeeccCCC
Q psy15734        242 SILSHQFGSYRCVAVNALGET-----DGFIKVYVNLVDG----------DIFQI----RKMSRLHMGAYLCIASNGVVPS  302 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~-----~~~~~l~V~~~~~----------~~~~~----~~~~~~~~g~~~C~a~~~~~~~  302 (314)
                      +++.+|+|.|+|.|.|..|..     .....|.|...+.          ..+..    ..+..++...+.|.+.+.+.|.
T Consensus        79 ~v~~~DsG~Y~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~  158 (238)
T 2p1y_A           79 LATPSQTSVYFCASGDLGQTNERLFFGHGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDY  158 (238)
T ss_dssp             SCCGGGCEEEEEEEEC------CEEECCCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCE
T ss_pred             cCCcccCeeEEEEEEeCCCccccceeCCCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCc
Confidence            999999999999999986632     1334566655432          02222    1345566678999999999899


Q ss_pred             ccceE
Q psy15734        303 VSHRI  307 (314)
Q Consensus       303 ~~w~v  307 (314)
                      +.|.-
T Consensus       159 i~W~k  163 (238)
T 2p1y_A          159 FPWYQ  163 (238)
T ss_dssp             EEEEE
T ss_pred             EEEEE
Confidence            99964

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=99.36  E-value=1.4e-11  Score=98.92  Aligned_cols=129  Identities=12%  Similarity=0.091  Sum_probs=85.1

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eee----------cCCceeeeEeeCCeeeEEEEEEe
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MII----------TGDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~----------~~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      ..+..++....+.+|+++.|.|.+.+.|.+.+.|++....    .+.          ...++.+......  ...+|.|.
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~sL~I~   81 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGPQMLLKYYSGDPVVQGVNGFEAEFSKSD--SSFHLRKA   81 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECSTTCEEEEETTT--TEEEEEES
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceEEEEEECCCCCeEEEEEEccCCcccccCCCeEEEEcCCC--CEEEEEEC
Confidence            3466777888999999999999999999999999983211    111          1122222211111  23489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCce----eEEEEEEEec------------------CCCeeEEE----EccccccEeEEEEE
Q psy15734        242 SILSHQFGSYRCVAVNALGETD----GFIKVYVNLV------------------DGDIFQIR----KMSRLHMGAYLCIA  295 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~----~~~~l~V~~~------------------~~~~~~~~----~~~~~~~g~~~C~a  295 (314)
                      +++.+|+|.|+|.+.|..+...    ....|.|...                  ..+.+...    .+..++...+.|.+
T Consensus        82 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~  161 (256)
T 3tf7_C           82 SVHRSDSAVYFCAVSAKGTGSKLSFGKGAKLTVSPGGGGSGGGGSGGGGSGGGGSEAAVTQSPRNKVTVTGENVTLSCRQ  161 (256)
T ss_dssp             SCCGGGCSEEEEEEECTTCTTCEEECCCEEEEEEC---------------------CCEEESCSEEEEETTCCEEECEEE
T ss_pred             CCCcccCEEEEEEEecCCCccceEECCCeEEEEeCCCCCcCCCCcCcccCCCCcCccEEEecCCEEEEeCCCcEEEEEEc
Confidence            9999999999999999865332    2346666641                  11222221    23355666799999


Q ss_pred             eeccCCCccceE
Q psy15734        296 SNGVVPSVSHRI  307 (314)
Q Consensus       296 ~~~~~~~~~w~v  307 (314)
                      .+. .+.+.|.-
T Consensus       162 ~~~-~~~v~W~k  172 (256)
T 3tf7_C          162 TNS-HNYMYWYR  172 (256)
T ss_dssp             CSC-CSEEEEEE
T ss_pred             CCC-ceEEEEEE
Confidence            887 67899954

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=99.36  E-value=4.6e-12  Score=101.75  Aligned_cols=123  Identities=18%  Similarity=0.125  Sum_probs=81.0

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC--e--eeec-------------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG--D--MIIT-------------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~--~~~~-------------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ....+.+|++++|.|.+.+.|  .+.+.|++++.  .  .+..             ..++.+.....  ....+|.|.++
T Consensus         8 ~~~~v~~G~~v~L~C~~~g~p~~~~~v~W~k~~~g~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~v   85 (257)
T 1f3r_B            8 GPGLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTS--KNQVFLKMNSL   85 (257)
T ss_dssp             CCSEECTTSEEEEEEEEESSCTTTSCCEEEEEETTSCCEEEEEECSSSCEEECSSSSTTEEEEEETT--TTEEEEEEESC
T ss_pred             CCccccCCceEEEEEEEecccCCCccEEEEEeCCCCCcEEEEEEecCCceeeCcccCCcEEEEEECC--CCEEEEEECCC
Confidence            345799999999999999985  78999998521  1  1110             12333322111  12348999999


Q ss_pred             CCCCCeEEEEEEeeCCCC------c---eeEEEEEEEecCC------------C-eeEE----EEccccccEeEEEEEee
Q psy15734        244 LSHQFGSYRCVAVNALGE------T---DGFIKVYVNLVDG------------D-IFQI----RKMSRLHMGAYLCIASN  297 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~g~------~---~~~~~l~V~~~~~------------~-~~~~----~~~~~~~~g~~~C~a~~  297 (314)
                      +.+|+|.|+|.|.|..|.      .   .....|.|...+.            + .+..    ..+..++...+.|.+.+
T Consensus        86 ~~~DsG~Y~C~a~n~~g~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~  165 (257)
T 1f3r_B           86 QTDDTGTYYCTRDLYGGYPLGFWYFDFWGPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQ  165 (257)
T ss_dssp             CTTCCEEEEEEEESSSSCCSSCCCEEEECCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSS
T ss_pred             CcccCEEEEEEEcccccCccccccccccCCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECC
Confidence            999999999999998641      1   1334666765431            1 1111    12445566679999999


Q ss_pred             ccCCCccceE
Q psy15734        298 GVVPSVSHRI  307 (314)
Q Consensus       298 ~~~~~~~w~v  307 (314)
                      .+++.+.|.-
T Consensus       166 ~~~~~v~W~k  175 (257)
T 1f3r_B          166 NINNYLAWYQ  175 (257)
T ss_dssp             CCBTCEEEEE
T ss_pred             cCCCcEEEEE
Confidence            9888999965

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=99.35  E-value=4.5e-12  Score=99.22  Aligned_cols=123  Identities=14%  Similarity=0.131  Sum_probs=80.1

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-ee---eec----------------CCceeeeEeeCCeeeEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-DM---IIT----------------GDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~~---~~~----------------~~~~~~~~~~~~~~~~s~L~  239 (314)
                      +....+.+|+++.|.|.+.+.|  .+.+.|++++. ..   +..                ..++.+.....  .....|.
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~   84 (220)
T 1pz5_B            7 SGGGLVQPGGSMKLSCVASGFTFSNYWMEWVRQSPEKGLEWVAEIRLKSNNYATHYAESVKGRFTISRDDS--KSSVYLQ   84 (220)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEECCGGGTTCEEECGGGTTTEEEEEEGG--GTEEEEE
T ss_pred             cCCEEEcCCCeEEEEEEEcCCccCCccEEEEEeCCCCCcEEEEEEEcCCCccccccCcccCCcEEEEEeCC--CCeEEEE
Confidence            4456889999999999999876  78999998531 11   110                12222222111  1234899


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCc---eeEEEEEEEec--CCCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        240 IRSILSHQFGSYRCVAVNALGET---DGFIKVYVNLV--DGDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~---~~~~~l~V~~~--~~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      |.+++.+|+|.|.|.+.|..+..   .....|.|...  ..+.+.+..    +..++...+.|.|.+. |.| .+.|.
T Consensus        85 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  162 (220)
T 1pz5_B           85 MNNLRAEDTGIYYCTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEPVTVKWN  162 (220)
T ss_dssp             ECSCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             EccCCHHHCEEEEEEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCCeEEEEe
Confidence            99999999999999999976431   13456666532  223333221    2344556799999998 778 89995

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=99.35  E-value=5.4e-12  Score=98.49  Aligned_cols=122  Identities=16%  Similarity=0.140  Sum_probs=77.5

Q ss_pred             CCcceeecCccEEEEEEE-eecC-CceeEEecCCC-eee---ec---------CCceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        182 NQLEGAFVSQTVELHCHT-EAFP-ASLNYWTNEKG-DMI---IT---------GDDYEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~-~g~p-~p~~~W~~~~~-~~~---~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      +....+.+|+++.|.|.+ .+.+ .+.+.|++++. ...   ..         ..++.... ..   ...+|.|.+++.+
T Consensus         7 p~~~~v~~G~~v~L~C~v~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~r~~~~~-~~---~~~~L~I~~v~~~   82 (216)
T 2xzc_L            7 PPSVSAAPGQKVTISCSGSSSNIGNNYVSWYQQLPGTAPKLLIYDNNKRPSGIPDRFSGSK-SG---TSATLGITGLQTG   82 (216)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEE-ET---TEEEEEECSCCGG
T ss_pred             CCcEEecCCCeEEEEEEeecCCCCCCeEEEEEeCCCCCcEEEEEecCccCCCCCCceEEec-cC---CEEEEEECCCCcc
Confidence            566789999999999995 4443 68999998542 111   10         12222221 11   2348999999999


Q ss_pred             CCeEEEEEEeeCCC--CceeEEEEEEEecC-CCeeEEEEc----cccccEeEEEEEeeccCC--CccceE
Q psy15734        247 QFGSYRCVAVNALG--ETDGFIKVYVNLVD-GDIFQIRKM----SRLHMGAYLCIASNGVVP--SVSHRI  307 (314)
Q Consensus       247 d~G~Y~C~a~n~~g--~~~~~~~l~V~~~~-~~~~~~~~~----~~~~~g~~~C~a~~~~~~--~~~w~v  307 (314)
                      |+|.|+|.|.|..+  .......|.|...+ .+.+.+...    ..++...+.|.+.+++++  .+.|..
T Consensus        83 D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~k  152 (216)
T 2xzc_L           83 DEADYYCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYPREAKVQWKV  152 (216)
T ss_dssp             GCEEEEEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             cCEEEEEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEcCCceEEEEEE
Confidence            99999999999876  12234456665432 233333221    123456799999995543  788953

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=99.35  E-value=1.1e-11  Score=99.46  Aligned_cols=126  Identities=15%  Similarity=0.060  Sum_probs=80.7

Q ss_pred             cCCCcceeecCccEEEEEEEeec--CCceeEEecCCC---eeee--------------cCCceeeeEeeCCeeeEEEEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF--PASLNYWTNEKG---DMII--------------TGDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~---~~~~--------------~~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      ..+....+.+|++++|.|.+.+.  |.+.+.|++.+.   ....              ...++.+.....  ....+|.|
T Consensus        13 ~~p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I   90 (257)
T 3gkz_A           13 QESGPSLVKPSQTLSLTCSVTGDSVTSGYWSWIRQFPGNKLDYMGYISYRGSTYYNPSLKSRISITRDTS--KNQVYLQL   90 (257)
T ss_dssp             EEECCSEECTTCCEEEEEEEEESCCSSCEEEEEEECTTSCEEEEEEEETTCCEEECTTTTTTEEEEEEGG--GTEEEEEE
T ss_pred             ECCCCeEEcCCCcEEEEEEEEcccccceEEEEEEECCCCCcEEEEEEecCCcEEecccccccEEEEEecC--CceEEEEE
Confidence            34455678999999999999994  578999998421   1111              012222221111  12348999


Q ss_pred             eecCCCCCeEEEEEEeeCCCC----ceeEEEEEEEec------------CCCeeEE----EEccccccEeEEEEEeeccC
Q psy15734        241 RSILSHQFGSYRCVAVNALGE----TDGFIKVYVNLV------------DGDIFQI----RKMSRLHMGAYLCIASNGVV  300 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g~----~~~~~~l~V~~~------------~~~~~~~----~~~~~~~~g~~~C~a~~~~~  300 (314)
                      .+++.+|+|.|+|.|.|..+.    ......|.|...            +.+.+..    ..+..++...+.|.+.+.+.
T Consensus        91 ~~v~~~DsG~Y~C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  170 (257)
T 3gkz_A           91 KSVSSEDTATYYCSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVS  170 (257)
T ss_dssp             CSCCGGGCEEEEEEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCC
T ss_pred             CCCChhhCEEEEEEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCcc
Confidence            999999999999999997322    223456666654            1222221    23455666779999999887


Q ss_pred             C-CccceE
Q psy15734        301 P-SVSHRI  307 (314)
Q Consensus       301 ~-~~~w~v  307 (314)
                      + .+.|.-
T Consensus       171 ~~~v~W~k  178 (257)
T 3gkz_A          171 SSHLYWYQ  178 (257)
T ss_dssp             GGGEEEEE
T ss_pred             ceEEEEEE
Confidence            7 899964

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=99.34  E-value=9.6e-12  Score=100.25  Aligned_cols=129  Identities=19%  Similarity=0.220  Sum_probs=86.1

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecC------CceeEEecCC-Ce---eeec---------CCceeeeEeeCCeeeEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFP------ASLNYWTNEK-GD---MIIT---------GDDYEDSRLINGYSCHM  236 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p------~p~~~W~~~~-~~---~~~~---------~~~~~~~~~~~~~~~~s  236 (314)
                      +.+...+....+.+|++++|.|.+.+.|      .+.+.|++.+ +.   .+..         ..++.+.. ..   ...
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~~~~~~~~~~v~W~k~~~g~~~~~l~~~~~~~~~~~~~R~~~~~-~~---~~~   81 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTLLYSNNQKNYLAWYQQKPGQSPKLLISWAFTRKSGVPDRFTGSG-SG---TDF   81 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE-ET---TEE
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcccccccCCceEEEEEECCCCCcEEEEEecccCCCCCCccEEEec-CC---CEE
Confidence            4456667778899999999999999988      7899999853 11   1111         12333321 11   134


Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEecCC----------------CeeEEE-----EccccccEeEEEE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLVDG----------------DIFQIR-----KMSRLHMGAYLCI  294 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~~~----------------~~~~~~-----~~~~~~~g~~~C~  294 (314)
                      .|.|.+++.+|+|.|.|.+.|..+.. .....|.|...+.                +.+.+.     .+..++...+.|.
T Consensus        82 ~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~  161 (264)
T 2gjj_A           82 TLTIGSVKAEDLAVYYCQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCK  161 (264)
T ss_dssp             EEEESSCCGGGCEEEEEEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEE
T ss_pred             EEEECCCCHHHCEEEEEEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEE
Confidence            89999999999999999999876432 2345677766531                122221     3445566679999


Q ss_pred             EeeccC--CCccceEE
Q psy15734        295 ASNGVV--PSVSHRIM  308 (314)
Q Consensus       295 a~~~~~--~~~~w~v~  308 (314)
                      +.+.+.  +.+.|.-.
T Consensus       162 ~~~~~~~~~~v~W~r~  177 (264)
T 2gjj_A          162 ASGYSFTGYFINWVKK  177 (264)
T ss_dssp             EESSCGGGSEEEEEEE
T ss_pred             EeCCccCCeEEEEEEE
Confidence            998864  78999643

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=99.34  E-value=8.4e-12  Score=100.14  Aligned_cols=122  Identities=14%  Similarity=0.145  Sum_probs=81.4

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC--ee--eec--------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG--DM--IIT--------------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~~--~~~--------------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|++++|.|.+.+.|  .+.+.|++.+.  ..  +..              ..++.+......  ...+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~~L~I~   84 (256)
T 1nqb_A            7 SGAELVKPGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNSGGTKYNEKFKSKATLTVDKPS--STAYMQLS   84 (256)
T ss_dssp             CCCEEECTTCCEEEEEEECSSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGTTTEEEEEETTT--TEEEEEEC
T ss_pred             CCCeeecCCCcEEEEEEeccccCCCceEEEEEECCCCCcEEEEEEecCCCceeeCcccCCeEEEEEecCC--CEEEEEEC
Confidence            4456889999999999999886  68999998421  11  110              123333221111  13489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCC---c--eeEEEEEEEecCCCeeEE----EEccccccEeEEEEEeeccCC-----CccceE
Q psy15734        242 SILSHQFGSYRCVAVNALGE---T--DGFIKVYVNLVDGDIFQI----RKMSRLHMGAYLCIASNGVVP-----SVSHRI  307 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~---~--~~~~~l~V~~~~~~~~~~----~~~~~~~~g~~~C~a~~~~~~-----~~~w~v  307 (314)
                      +++.+|+|.|.|.|.|..|.   .  ...+.|.|...  +.+..    ..+..++...+.|.+.+.+++     .+.|..
T Consensus        85 ~v~~~DsG~Y~C~~~n~~g~~~~~~~~~~~~L~V~~~--~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~~~~~v~W~k  162 (256)
T 1nqb_A           85 SLTSEDSAVYYCARYDYYGSSYFDYWGQGTTVTVSSD--IELTQTPLSLPVSLGDQASISCRSSQSIVHSNGNTYLEWYL  162 (256)
T ss_dssp             SCCGGGCEEEEEEECCTTSSSSCSEECCCEEEEECCC--CCEEEECSEEEECTTCCEEEEEEESSCCBCTTSCBCEEEEE
T ss_pred             cCChhhCEEEEEEEeeccCccceeEEcCceeeeeccc--ccEEecCcEEEEecCCcEEEEeEecCcccccccceEEEEEE
Confidence            99999999999999998763   1  23355666533  22222    134556667899999998865     899965

>4f9p_D 103.2 anti-BTN3A1 antibody fragment; B7 superfamily, butyrophilin, CD277, immune system; 3.52A {Mus musculus}

Probab=99.34  E-value=2.7e-10  Score=87.41  Aligned_cols=132  Identities=19%  Similarity=0.339  Sum_probs=75.9

Q ss_pred             ceEEEcCCcEEEEEEecCCC--ceEEEEEEcC-ceeEEEeee------e-ee--ecCcCEEEEeCCc-eeEEEEEeeecC
Q psy15734         30 NVTATVGKEALMACVVENLR--EYKVAWVKMI-TQTILSIHH------K-VV--TQNKRVSITFNDH-RSWFLHLRDVQE   96 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~-~~~~~~~~~------~-~~--~~~~~~~~~~~~~-~~~~L~i~~~~~   96 (314)
                      .-.+.+|+++.|.|.+++..  ...+.|+|.. ++-++-...      . .+  .-.+|+.+..+.. +...|.+.+++.
T Consensus         9 ~~lvkPG~Sl~lSC~~SG~tf~~y~~~WvRQaPGkgLEWvg~I~~~~g~t~Y~~s~kgR~TiSrD~s~nt~yLqm~sL~~   88 (254)
T 4f9p_D            9 AEVVRPGTSVKVSCKASGYAFTSYLIHWIKQRPGQGLEWIGVINPRSGDSHYNEKFKDRTTLTADQSSSTAYMQLSSLTS   88 (254)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGCCEEEEEEETTTEEEEEEEEETTTTEEECCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             CceECCCCCeEEEEEEeCCChhhCcEEEEEeCCCCCeEEEEEEcCCCCCEEECHHhCCCEEEeeccCCCcCeeEEccCCC
Confidence            44588899999999998854  4679999863 222211100      0 01  1235888876644 345799999999


Q ss_pred             CCCeEEEEEEecCCCc-ceeEEEEEEe----CC---------------ceeeecCcceeEEecCceEEEEEEecccCCCc
Q psy15734         97 TDRGWYMCQINTVPMT-SQKGYLQVVV----PP---------------RILLDRTSTDVVVREGTEVTLECSAVGYPEPY  156 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~~~-~~~~~l~v~~----~p---------------~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~  156 (314)
                      +|++.|+|.-...... -.-..+.|..    .|               .+.....+....+..|+.++|.|.+...-...
T Consensus        89 eDTAvYYCAr~~~~d~WGqGT~VTVSSast~~ps~~~l~~~~sgGSgsdivltQsP~slsvs~G~~vtlsC~~S~~~~~~  168 (254)
T 4f9p_D           89 DDSAVYFCARSDYGAYWGQGTLVTVSAAGGGGSGGGGSGGGGSGGGGSDIVLTQSPVTLSVTPGDSVSLSCRASQSISNN  168 (254)
T ss_dssp             GGCEEEECEESSSCCEECCCEEEEECC-------------------CCSCCEEEECSEEEECTTCEEEEEEEESSCCTTC
T ss_pred             CCCEEEEEEecCCCCCcCCCEEEEEeCCCCcCCCCCCCccccccccccccccccCCceeEEcCCCcEeeEEEccCcccCC
Confidence            9999999975221100 0011233321    11               11111123445567777777777765433345


Q ss_pred             eEEEc
Q psy15734        157 VAWRR  161 (314)
Q Consensus       157 ~~W~~  161 (314)
                      +.|++
T Consensus       169 l~Wyq  173 (254)
T 4f9p_D          169 LHWYR  173 (254)
T ss_dssp             CEEEE
T ss_pred             cEEEE
Confidence            77776

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=99.34  E-value=1.2e-12  Score=105.74  Aligned_cols=126  Identities=12%  Similarity=0.077  Sum_probs=81.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEe---ecCCceeEEecCCCeeeec-----------------CCceeeeEeeCCeeeEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTE---AFPASLNYWTNEKGDMIIT-----------------GDDYEDSRLINGYSCHM  236 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~---g~p~p~~~W~~~~~~~~~~-----------------~~~~~~~~~~~~~~~~s  236 (314)
                      .+..++....+.+|+++.|.|.+.   +.|.+.+.|++++......                 ..+..+  ..+......
T Consensus         7 ~v~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~--~~~~~~~~~   84 (268)
T 3mj6_A            7 GLTVSSPQLRVHVGESVLMGCVVQRTEEKHVDRVDWLFSKDKDDASEYVLFYYSNLSVPTGRFQNRSHL--VGDTFHNDG   84 (268)
T ss_dssp             -----CCEEEEETTCCEEECCBCCCSSCCCEEEEEEEEESSSTTCCEEEEEEETTEEEECGGGTTTEEE--CSCTTTTBC
T ss_pred             ccccCCCceEEecCCcEEEEEEeecCCCCceEEEEEEEeCCCCCceEEEEEEcCCCcccCccccCceEE--eecCCCCEE
Confidence            445566778899999999999998   7888899999964321100                 011111  000001113


Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCcee--EEEEEEEecCCCeeEEEEccccccEeEEEEE---eeccCCCccceE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGETDG--FIKVYVNLVDGDIFQIRKMSRLHMGAYLCIA---SNGVVPSVSHRI  307 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~~~--~~~l~V~~~~~~~~~~~~~~~~~~g~~~C~a---~~~~~~~~~w~v  307 (314)
                      +|.|.+++.+|+|.|+|.|.|..+....  .+.|.|......   ...+..++...+.|.+   .+.+.|.+.|..
T Consensus        85 ~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~l~V~~~~p~---~~~v~~G~~v~L~C~~~~~~~~p~~~v~W~~  157 (268)
T 3mj6_A           85 SLLLQDVQKADEGIYTCEIRLKNESMVMKKPVELWVLPEEPR---DLRVRVGDTTQMRCSIQSTEEKRVTKVNWMF  157 (268)
T ss_dssp             CEEECSCCGGGCEEEEEEEEETTCCCEEEEEEEEEEECCCCS---EEEEETTCCEEECCBCEESSSSCCCEEEEEE
T ss_pred             EEEECCCCHhHCEEEEEEEEecCCcceEEEEEEEEEeccCCC---ccccccCCcEEEEEEecCCCCCCccceEEEe
Confidence            8999999999999999999998766544  445555433222   2234556677899999   556888999976

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=99.34  E-value=5.1e-12  Score=99.58  Aligned_cols=123  Identities=15%  Similarity=0.112  Sum_probs=78.3

Q ss_pred             CCcceeecCccEEEEEEEeecCC----ceeEEecCC-Ce---eeec-------------CCceeeeEeeCCeeeEEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPA----SLNYWTNEK-GD---MIIT-------------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~-~~---~~~~-------------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      +....+.+|++++|.|.+.+.|.    +.+.|++.+ +.   .+..             ..++.+.....  .....|.|
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I   84 (228)
T 3bae_H            7 SGPGLLKPSQTLSLTCSFSGFSIRTSKVGVSWIRQPSGKGLEWLAHIYWDDDKRYNPSLESRLTISKDTS--RDMVFMKI   84 (228)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCHHHHCCEEEEEEEETTCCCEEEEEECTTSCEEECTTTGGGEEEEEETT--TTEEEEEE
T ss_pred             CCceeecCCCeEEEEEEEeCcccCCCceeEEEEEECCCCCeEEEEEEecCCceeeCcccCCcEEEEEcCC--CCeEEEEE
Confidence            45568899999999999999875    889999853 11   1111             11222221111  11358999


Q ss_pred             eecCCCCCeEEEEEEeeCCC------C---ceeEEEEEEEec--CCCeeEEEE----ccccccEeEEEEEeec-cCC-Cc
Q psy15734        241 RSILSHQFGSYRCVAVNALG------E---TDGFIKVYVNLV--DGDIFQIRK----MSRLHMGAYLCIASNG-VVP-SV  303 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~~g------~---~~~~~~l~V~~~--~~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~  303 (314)
                      .+++.+|+|.|.|.+.|..|      .   ....+.|.|...  ..+.+.+..    +..++...+.|.|.++ |.| .+
T Consensus        85 ~~v~~~D~G~Y~C~~~~~~g~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p~~v  164 (228)
T 3bae_H           85 TSVDTADTATYYCARRGFYGRKYEVNHFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTL  164 (228)
T ss_dssp             CSCCGGGCEEEEEEEEEESTTCTTSEEEEEECCCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSCCEE
T ss_pred             cCCCcccCEEEEEEEecCCCccccccceeeeCCcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCCEEE
Confidence            99999999999999999765      1   112356777632  123333221    2334455799999987 666 88


Q ss_pred             cce
Q psy15734        304 SHR  306 (314)
Q Consensus       304 ~w~  306 (314)
                      +|.
T Consensus       165 ~W~  167 (228)
T 3bae_H          165 TWN  167 (228)
T ss_dssp             EEG
T ss_pred             EEe
Confidence            885

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=99.34  E-value=1.2e-11  Score=100.10  Aligned_cols=164  Identities=13%  Similarity=0.119  Sum_probs=78.3

Q ss_pred             ecCCCCeEEEEEEecCCCc-ceeEEEEEEeCCceeeecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCe
Q psy15734         94 VQETDRGWYMCQINTVPMT-SQKGYLQVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGE  172 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~~~~-~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~  172 (314)
                      .+++|.+.|.|.+.+.... .....+.|..+        +....+.+|++++|.|.+.+ +.+.+.|++.+.        
T Consensus         3 ~~~~~~~~y~~~~~~~~g~~~~~~~~~v~~~--------p~~v~v~~G~~v~L~C~~~~-~~~~v~W~k~~~--------   65 (270)
T 3qib_D            3 NERADLIAYLKQATKGGGGSGGGGGMKVIQT--------PRYLVKGQGQKAKMRCIPEK-GHPVVFWYQQNK--------   65 (270)
T ss_dssp             -------------------------CCCEEE--------CSEEEEETTSCEEEEEECCT-TCCEEEEEEECT--------
T ss_pred             chhhhHHHHHHHHhccCCccccccceeEEeC--------CCeEEEcCCCCEEEEEEecC-CCceEEEEEECC--------
Confidence            3578999999998654222 22222222222        34567889999999999765 678999998321        


Q ss_pred             eCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC----ceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        173 LVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD----DYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       173 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                                       |....           .+.+..+ +.......    ++.+....   ....+|.|.+++.+|+
T Consensus        66 -----------------~~~~~-----------~~~~~~~-~~~~~~~~~~~~r~~~~~~~---~~~~sL~I~~v~~~D~  113 (270)
T 3qib_D           66 -----------------NNEFK-----------FLINFQN-QEVLQQIDMTEKRFSAECPS---NSPCSLEIQSSEAGDS  113 (270)
T ss_dssp             -----------------TCCEE-----------EEEEEET-TEEEEECHHHHHHEEEECCT---TSCEEEEESSCCGGGC
T ss_pred             -----------------CCCcE-----------EEEEECC-CCceecCCccCCcEEEEeCC---CcEEEEEECCCCHhHC
Confidence                             11111           1112221 11111110    22222111   1134999999999999


Q ss_pred             eEEEEEEeeCCC----CceeEEEEEEEecC----CCeeEEEEc-----cccccEeEEEEEeec-cCC-Cccce
Q psy15734        249 GSYRCVAVNALG----ETDGFIKVYVNLVD----GDIFQIRKM-----SRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       249 G~Y~C~a~n~~g----~~~~~~~l~V~~~~----~~~~~~~~~-----~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      |.|.|.+.+..+    .......|.|....    .+.+.+...     ..++...++|.+.++ |.| .+.|.
T Consensus       114 G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v~W~  186 (270)
T 3qib_D          114 ALYLCASSLNWSQDTQYFGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWW  186 (270)
T ss_dssp             EEEEEEEESCTTCCCCEECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSCEEEEEE
T ss_pred             eEEEEEEecCCCccceEECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCCeEEEEE
Confidence            999999997432    22234566676521    233333222     124556799999994 445 67884

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=99.34  E-value=2.9e-12  Score=111.17  Aligned_cols=96  Identities=20%  Similarity=0.364  Sum_probs=75.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.+..++....+.+|++++|.|.+ +.|.|.+.|+++++....... ..+.....++     +|.|.+++.+|+|.|+|
T Consensus       341 ~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i~W~~~~~~~~~~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C  414 (440)
T 3zyj_A          341 APVIVEPPADLNVTEGMAAELKCRA-STSLTSVSWITPNGTVMTHGAYKVRIAVLSDG-----TLNFTNVTVQDTGMYTC  414 (440)
T ss_dssp             CCCEEECCCCEEECTTSCCEECCEE-SSTTSEEEEECTTSCEEESSSCCSSEEECTTC-----CEEESSCCSTTCEEEEE
T ss_pred             CCcccccccceeeccCceEEEEeec-CCCCCceEEEeCCCceeeccCCCceEEEccCC-----eEEEccCChhhCEEEEE
Confidence            6778888888899999999999999 679999999997666554332 1233334455     89999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEEecCCC
Q psy15734        254 VAVNALGETDGFIKVYVNLVDGD  276 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~~~~~~  276 (314)
                      .|.|..|..++++.+.|...+++
T Consensus       415 ~a~N~~G~~~~~~~~~v~~~~~~  437 (440)
T 3zyj_A          415 MVSNSVGNTTASATLNVTGTHHH  437 (440)
T ss_dssp             EEECSSCEEEEEEEEEEC-----
T ss_pred             EEEcCCCcEEEEEEEEEeccccc
Confidence            99999999999999999877654

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=99.34  E-value=4.8e-12  Score=86.41  Aligned_cols=94  Identities=12%  Similarity=0.061  Sum_probs=63.8

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCE--EEEe--CCceeEEEEEeeec
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV--SITF--NDHRSWFLHLRDVQ   95 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~--~~~~--~~~~~~~L~i~~~~   95 (314)
                      .+|++..-..   ...|..+.|.|.+.|.|.+.+.|++++ ..+.        .+.++  .+..  .....+.|.|.+++
T Consensus         3 ~pP~i~~~~~---~~~~~~~~~~c~v~G~P~P~i~W~k~g-~~l~--------~~~~~~~~~~~~~~~~~~~~L~I~~v~   70 (103)
T 1wwb_X            3 FAPTITFLES---PTSDHHWCIPFTVKGNPKPALQWFYNG-AILN--------ESKYICTKIHVTNHTEYHGCLQLDNPT   70 (103)
T ss_dssp             CCCCCCCCCC---CCCCCEEEEEEEEECSSCCEEEEEETT-EEEC--------CCSSEEEEEEEECSSEEEEEEEEESCC
T ss_pred             CCCEEEeccC---ceECcEEEEEEEEEEeCCCEEEEEECC-EECC--------CCCcEeEEEEecCCcEEEEEEEECCCC
Confidence            4566542222   235788999999999999999999954 4332        12222  1111  11223469999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      .+|+|.|+|.+.|. |.....+.|.|..+|.
T Consensus        71 ~~D~G~Y~C~A~N~~G~~~~~~~l~V~~~P~  101 (103)
T 1wwb_X           71 HMNNGDYTLIAKNEYGKDEKQISAHFMGWPG  101 (103)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEECCSCCCC
T ss_pred             cccCEEEEEEEEeCCCcEeEEEEEEECCCCC
Confidence            99999999999876 5556667777776664

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=99.33  E-value=9.1e-12  Score=99.89  Aligned_cols=131  Identities=15%  Similarity=0.187  Sum_probs=85.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEee--cCCceeEEecCC-Ce---eee--c------------CCceeeeEeeCCeee
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEA--FPASLNYWTNEK-GD---MII--T------------GDDYEDSRLINGYSC  234 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g--~p~p~~~W~~~~-~~---~~~--~------------~~~~~~~~~~~~~~~  234 (314)
                      ++.+..++....+.+|++++|.|.+.+  .|.+.+.|++.. +.   .+.  .            ..++.+......  .
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~   83 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGYRFSHFTVHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA--N   83 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTT--T
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecccccCceEEEEEECCCCCcEEEEEEEcCCCcEeecccCcceEEEEEecCC--C
Confidence            456667778889999999999999998  477899999742 11   010  0            112322211111  2


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeC------------CCCceeEEEEEEEecCC-------------CeeEE----EEccc
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNA------------LGETDGFIKVYVNLVDG-------------DIFQI----RKMSR  285 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~------------~g~~~~~~~l~V~~~~~-------------~~~~~----~~~~~  285 (314)
                      ..+|.|.+++.+|+|.|.|.+.|.            .+.......|.|...+.             +.+..    ..+..
T Consensus        84 ~~~L~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~  163 (256)
T 3juy_B           84 TAYMELRSLRSADTAVYYCARVGEWGWDDSPYDNYYMDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSP  163 (256)
T ss_dssp             EEEEEECSCCGGGCEEEEEEECCCCCTTCCTTTTCSCCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECT
T ss_pred             EEEEEECCCCcccCEEEEEeEEeccccccccccccceeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeC
Confidence            347999999999999999999997            22234455676765422             11221    23445


Q ss_pred             cccEeEEEEEeeccC-CCccceE
Q psy15734        286 LHMGAYLCIASNGVV-PSVSHRI  307 (314)
Q Consensus       286 ~~~g~~~C~a~~~~~-~~~~w~v  307 (314)
                      ++...+.|.+.+.+. +.+.|.-
T Consensus       164 G~~v~L~C~~~~~~~~~~v~W~k  186 (256)
T 3juy_B          164 GERATFSCRSSHSIRSRRVAWYQ  186 (256)
T ss_dssp             TSCEEEEEEESSCCTTCCEEEEE
T ss_pred             CCCEEEEEEECCCcCCeeEEEEE
Confidence            566679999999876 8999954

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=99.33  E-value=1.2e-11  Score=97.00  Aligned_cols=123  Identities=14%  Similarity=0.092  Sum_probs=78.8

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e---eeec--------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D---MIIT--------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~---~~~~--------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+.+|+++.|.|.+.+.+  .+.+.|++.+. .   .+..              ..++.+.....  ....+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I~~   85 (223)
T 1dee_B            8 GGGVVQPGKSLRLSCAASGFTFSGYGMHWVRQAPGKGLEWVALISYDESNKYYADSVKGRFTISRDNS--KNTLYLQMNS   85 (223)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSCCEEECTTTBTTEEEEEETT--TTEEEEEECS
T ss_pred             CCEEEcCCCcEEEEEEecCcccCCceEEEEEECCCCCcEEEEEEecCCCccccCcccCCeEEEEecCC--CCEEEEEECC
Confidence            467899999999999999876  57899998531 1   1110              12222221111  1135899999


Q ss_pred             cCCCCCeEEEEEEeeCCCC------ceeEEEEEEEec--CCCeeEEEE----ccccccEeEEEEEeec-cCC-CccceE
Q psy15734        243 ILSHQFGSYRCVAVNALGE------TDGFIKVYVNLV--DGDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHRI  307 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~------~~~~~~l~V~~~--~~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~v  307 (314)
                      ++.+|+|.|.|.+.|..|.      ....+.|.|...  ..+.+.+..    +..++...+.|.+.++ |.| .++|..
T Consensus        86 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~~  164 (223)
T 1dee_B           86 LRAEDTAVYYCAKVKFYDPTAPNDYWGQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDSITFSWKY  164 (223)
T ss_dssp             CCGGGCEEEEEEEESSSSTTCCEEEECCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSCCEEEEEE
T ss_pred             CCHHHCEEEEEEEeccccCcccceeecCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCCeEEEeEc
Confidence            9999999999999987531      113346777642  223333222    1233455799999997 556 888965

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=99.33  E-value=3.6e-12  Score=102.47  Aligned_cols=133  Identities=10%  Similarity=0.060  Sum_probs=74.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---Cee-eecCC----------ce--eeeEeeCCeeeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---GDM-IITGD----------DY--EDSRLINGYSCHMTL  238 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~~~-~~~~~----------~~--~~~~~~~~~~~~s~L  238 (314)
                      +|.+..++....+.+|++++|.|.+.+.|.+.+.|++..   ... +....          .+  +.....+......+|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYIHWYLHQEGKAPQRLLYYDSYTSSVVLESGISPGKYDTYGSTRKNLRM   81 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEEEEEEECTTSCCEEEEEEETTTCCEEECTTCCBTTEEEECC--CCCEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEEEEEEECCCCCcEEEEEEecCcCccccCCCCCcceeEeecCCCCeEEE
Confidence            355667778889999999999999999999999999832   111 11100          00  000011111123479


Q ss_pred             EEeecCCCCCeEEEEEEeeCCCC---ceeEEEEEEEecCC---------------CeeEE----EEccccccEeEEEEEe
Q psy15734        239 KIRSILSHQFGSYRCVAVNALGE---TDGFIKVYVNLVDG---------------DIFQI----RKMSRLHMGAYLCIAS  296 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~~---------------~~~~~----~~~~~~~~g~~~C~a~  296 (314)
                      .|.+++.+|+|.|.|.+.|..+.   ......|.|.....               +.+..    ..+..++...+.|.+.
T Consensus        82 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~  161 (259)
T 3omz_A           82 ILRNLIENDSGVYYCATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYE  161 (259)
T ss_dssp             EESSCCGGGCEEEEEEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEE
T ss_pred             EECCCCcccCEEEEEEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECC
Confidence            99999999999999999998762   33445666765421               11111    1234556667999998


Q ss_pred             ec-cCCCccceE
Q psy15734        297 NG-VVPSVSHRI  307 (314)
Q Consensus       297 ~~-~~~~~~w~v  307 (314)
                      +. +.+.+.|.-
T Consensus       162 ~~~~~~~v~W~k  173 (259)
T 3omz_A          162 TSWWSYYIFWYK  173 (259)
T ss_dssp             CCCSSCEEEEEE
T ss_pred             CccCCceEEEee
Confidence            75 677899953

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=99.33  E-value=7.5e-12  Score=97.33  Aligned_cols=126  Identities=13%  Similarity=0.117  Sum_probs=79.9

Q ss_pred             CCCcceeecCccEEEEEEEeecCCc---eeEEecCCCeeeecC-----Cce----------eeeEeeC-CeeeEEEEEEe
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPAS---LNYWTNEKGDMIITG-----DDY----------EDSRLIN-GYSCHMTLKIR  241 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p---~~~W~~~~~~~~~~~-----~~~----------~~~~~~~-~~~~~s~L~i~  241 (314)
                      .+..+.+.+|+++.|.|.+.+.|.+   .+.|++++.......     ...          +...... ......+|.|.
T Consensus         5 ~p~~vtv~~G~~v~L~C~v~~~~~~~~~~V~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~   84 (218)
T 4frw_A            5 TSDVVTVVLGQDAKLPCFYRGDSGEQVGQVAWARVDAGEGAQELALLHSKYGLHVSPAYEGRVEQPPPPRNPLDGSVLLR   84 (218)
T ss_dssp             CCSEEEEETTSCEEECCEECCCTTCEEEEEEEEEECSSSCEEEEEEEETTTEEEECGGGTTTEECCSSCCCTTBCCEEES
T ss_pred             CCCeEEEEcCCCEEEEEEEEcCCCCCccEEEEEECCCCCCceeEEEecCCCCeEeCccccceEEEecccccCCeEEEEEe
Confidence            3456788999999999999998876   478998654321110     000          0000000 01112379999


Q ss_pred             ecCCCCCeEEEEEEeeCCCCcee-EEEEEEEecCCCeeEEE---EccccccEeEEEEEeeccCCCccce
Q psy15734        242 SILSHQFGSYRCVAVNALGETDG-FIKVYVNLVDGDIFQIR---KMSRLHMGAYLCIASNGVVPSVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~~~~-~~~l~V~~~~~~~~~~~---~~~~~~~g~~~C~a~~~~~~~~~w~  306 (314)
                      +++.+|+|.|.|.+.+..+.... ...+.+...+.......   .+.......+.|.+.+.|+|.|+|.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i~W~  153 (218)
T 4frw_A           85 NAVQADEGEYECRVSTFPAGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSVTWD  153 (218)
T ss_dssp             SCCGGGCEEEEEEEEEETTEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEEEEE
T ss_pred             eccHHHCCceeEEEEeccCceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceEEEE
Confidence            99999999999999987765543 34444444433333221   2233334469999999999999995

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=99.33  E-value=1.4e-11  Score=97.04  Aligned_cols=123  Identities=11%  Similarity=0.055  Sum_probs=76.7

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-ee---ee--c------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-DM---II--T------------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~~---~~--~------------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|++++|.|.+.+.|  .+.+.|++.+. ..   +.  .            ..++.+......  ...+|.|.
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~~--~~~sL~I~   84 (227)
T 1mju_H            7 PGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSS--STAYMQLS   84 (227)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT--TEEEEEEC
T ss_pred             CCCeEEcCCCCEEEEEEecCCccccceEEEEEeCCCCCcEEEEEEeccCCceeeCCccCCcEEEEEeCCC--CeEEEEEC
Confidence            4556799999999999999887  68999998641 11   10  0            123332221111  23489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCC-ceeEEEEEEEec--CCCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        242 SILSHQFGSYRCVAVNALGE-TDGFIKVYVNLV--DGDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~-~~~~~~l~V~~~--~~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      +++.+|+|.|.|.+.|..+. ....+.|.|...  ..+.+.+..    +..++...+.|.|.++ |.| .+.|.
T Consensus        85 ~v~~~D~G~Y~C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  158 (227)
T 1mju_H           85 SLTSDDSAVYYCANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEPVTLTWN  158 (227)
T ss_dssp             SCCGGGCEEEEEEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCCcccCEEEEEEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCCeEEEEe
Confidence            99999999999999986321 122346677642  123333221    2234455799999986 555 88884

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=99.33  E-value=6.6e-13  Score=90.26  Aligned_cols=91  Identities=14%  Similarity=0.232  Sum_probs=61.1

Q ss_pred             CCceecCC----cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         21 MPRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        21 ~p~~~~~~----~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      +|.|..++    ..+.+.+|+++.|.|.+.+.+.+.+.|++++ ..+...     .....+....   ..+.|.|.+++.
T Consensus         4 ~P~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v~W~~~~-~~~~~~-----~~~~~~~~~~---~~~~L~i~~v~~   74 (100)
T 3caf_A            4 APYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFKQE-----HRIGGYKVRN---QHWSLIMESVVP   74 (100)
T ss_dssp             EEEESCTTTTSCCEEEECTTCCEEEECCEEEESCCEEEEEETT-EECCGG-----GSTTCCEEEG---GGTEEEECSCCG
T ss_pred             CCEeEcCccccccEEEecCCCEEEEEEEccccCCCEEEEEECC-EEcccc-----cccccEEEec---CeEEEEEccCCc
Confidence            46666443    5678999999999999998888999999954 322110     0001122221   123799999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEE
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      +|+|.|+|.+.|. +.....+.|.|
T Consensus        75 ~D~G~Y~C~a~N~~g~~~~~~~l~V   99 (100)
T 3caf_A           75 SDKGNYTCVVENEYGSINHTYHLDV   99 (100)
T ss_dssp             GGCEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CCCEEEEEEEEeCCCEEEEEEEEEE
Confidence            9999999999775 33344444544

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=99.32  E-value=1.1e-11  Score=98.58  Aligned_cols=126  Identities=16%  Similarity=0.100  Sum_probs=80.0

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-------------CeeeecC----CceeeeEeeCCeeeEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-------------GDMIITG----DDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-------------~~~~~~~----~~~~~~~~~~~~~~~s~L~  239 (314)
                      .+..++....+.+|+++.|.| ..+.|.+.+.|++..             +......    .++.+....   ....+|.
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~---~~~~sL~   79 (245)
T 4ei6_B            4 KVLQIPSHQIIDMGQMVTLNC-DPVSNHLYFYWYKQILGQQMEFLVNFYNGKVMEKSKLFKDQFSVERPD---GSYFTLK   79 (245)
T ss_dssp             CCEEECSEEEEETTCCEEEEE-ECCTTCCEEEEEEEETTTEEEEEEEEETTEEEEECTTCCTTEEEECCT---TSCEEEE
T ss_pred             ceEeCCceEEecCCCCEEEEE-EcCCCCCEEEEEEECCCCCcEEEEEECCCceeccCCCccCCEEEEecc---CceEEEE
Confidence            455567778899999999999 778889999999821             1111111    333322111   1234899


Q ss_pred             EeecCCCCCeEEEEEEeeCC----CCceeEEEEEEEec----CCCeeEEEEc-----cccccEeEEEEEeeccCC--Ccc
Q psy15734        240 IRSILSHQFGSYRCVAVNAL----GETDGFIKVYVNLV----DGDIFQIRKM-----SRLHMGAYLCIASNGVVP--SVS  304 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~----g~~~~~~~l~V~~~----~~~~~~~~~~-----~~~~~g~~~C~a~~~~~~--~~~  304 (314)
                      |.+++.+|+|.|.|.+.+..    +.......|.|...    ..+.+.+...     ..++...+.|.+.+++++  .+.
T Consensus        80 I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p~~~~v~  159 (245)
T 4ei6_B           80 IQPTALEDSAVYFCASSFWGAYAEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELS  159 (245)
T ss_dssp             ECSCCGGGCEEEEEEEECSSTTCCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEE
T ss_pred             ECCCCHhHCEEEEEEEccCCCcceEEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeCCCeEEE
Confidence            99999999999999999642    22234456677641    1233333221     124455799999996554  788


Q ss_pred             ce
Q psy15734        305 HR  306 (314)
Q Consensus       305 w~  306 (314)
                      |.
T Consensus       160 W~  161 (245)
T 4ei6_B          160 WW  161 (245)
T ss_dssp             EE
T ss_pred             EE
Confidence            85

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=99.32  E-value=1.7e-11  Score=95.93  Aligned_cols=122  Identities=14%  Similarity=0.098  Sum_probs=79.0

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e---eeec--------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D---MIIT--------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~---~~~~--------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+.+|++++|.|.+.+.|  .+.+.|++.+. .   .+..              ..++.+..  +......+|.|.+
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~--~~~~~~~~L~I~~   85 (220)
T 2fbj_H            8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR--DNAKNSLYLQMSK   85 (220)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE--CSSSCEEEEEECS
T ss_pred             CCeEecCCCcEEEEEEecCccCCCceEEEEEECCCCCeEEEEEEccCCCceecCCccCCcEEEEe--eCCCCEEEEEECC
Confidence            447889999999999999876  67899998531 1   1110              12222221  1111235899999


Q ss_pred             cCCCCCeEEEEEEeeCCCC---ceeEEEEEEEecC--CCeeEEEE---ccccccEeEEEEEeec-cC--CCccce
Q psy15734        243 ILSHQFGSYRCVAVNALGE---TDGFIKVYVNLVD--GDIFQIRK---MSRLHMGAYLCIASNG-VV--PSVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~--~~~~~~~~---~~~~~~g~~~C~a~~~-~~--~~~~w~  306 (314)
                      ++.+|+|.|.|.+.|..+.   ....+.|.|...+  .+.+.+..   +..++...+.|.+.++ |.  +.+.|.
T Consensus        86 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~g~~v~L~C~~~g~~P~~~~~v~W~  160 (220)
T 2fbj_H           86 VRSEDTALYYCARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTLPPALSSDPVIIGCLIHDYFPSGTMNVTWG  160 (220)
T ss_dssp             CCGGGCEEEEEEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECCCSSSCCSSEEEEEEEEEEBSCCCEEEEES
T ss_pred             CChhhCEEEEEEEeccccccceecCCEEEEecCCCCCCCEEEEeecccccCCCcEEEEEEEEeEECCCcEEEEEe
Confidence            9999999999999997542   1234567776532  23333322   2334455799999998 54  588884

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=99.31  E-value=1.4e-11  Score=86.94  Aligned_cols=100  Identities=13%  Similarity=0.257  Sum_probs=65.7

Q ss_pred             cCCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC--ceeEEEEEeeecCCCCeE
Q psy15734         26 EPVANVTATVGKEALMACVVEN--LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND--HRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~d~G~  101 (314)
                      .++..+.+.+|+++.|.|.+.+  .+.+.+.|++++......    ......+.......  ...+.|.|.+++.+|+|.
T Consensus        13 ~p~~~v~v~~G~~v~L~C~~~g~p~~~~~i~W~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~DsG~   88 (122)
T 3s35_X           13 SPSHGIELSVGEKLVLNCTARTELNVGIDFNWEYPSSKHQHK----KLVNRDLKTQSGSEMKKFLSTLTIDGVTRSDQGL   88 (122)
T ss_dssp             ESCSCEEEEETCCEEEEEEEEECTTCCCEEEEECSCTTCCHH----HHBCCSCCEEEETTEEEEEEEEEESSCCGGGCEE
T ss_pred             cCCCCEEEecCCeEEEEEEEEcCCCCcEEEEEECCCcccCCc----eeeeeccccccCCceeeEEEEEEECCCCcccCEE
Confidence            4566678999999999999987  455789999965421000    00011111111110  123479999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEEeCCceeee
Q psy15734        102 YMCQINTV-PMTSQKGYLQVVVPPRILLD  129 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~~~p~~~~~  129 (314)
                      |+|.+.|. +.....+.|.|..+|.+...
T Consensus        89 Y~C~a~n~~g~~~~~~~l~V~~~p~i~~~  117 (122)
T 3s35_X           89 YTCAASSGLMTKKNSTFVRVHEKPFVAFG  117 (122)
T ss_dssp             EEEEEECSSCEEEEEEEEEEEEEECC---
T ss_pred             EEEEEccCCCceEEEEEEEEeccCeEEee
Confidence            99999875 45567788999888877654

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=99.31  E-value=3.9e-12  Score=86.76  Aligned_cols=80  Identities=14%  Similarity=0.152  Sum_probs=60.1

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+.+|+++.|.|.+. .|.+.+.|+++ +..+....++.+.....    ...|.|.++..+|+|.|+|.|.|    ..
T Consensus        20 ~~~v~~G~~v~L~C~~~-~p~~~v~W~k~-g~~~~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~a~~----~~   89 (102)
T 2eo1_A           20 EVQAEAGASATLSCEVA-QAQTEVTWYKD-GKKLSSSSKVRVEAVGC----TRRLVVQQAGQAEAGEYSCEAGG----QQ   89 (102)
T ss_dssp             EEEEETTCCEEECCBCS-CSSSCCEEEET-TEECCCCSSEEEEEETT----EEEEEETTCCTTTCSCEEEEETT----EE
T ss_pred             cEEEeCCCcEEEEEEec-CCCCceEEEEC-CEECCCCCCEEEEEcCC----EEEEEECCCCcccCEEEEEEcCC----Cc
Confidence            44788999999999998 89999999997 44444444544432211    24899999999999999999954    45


Q ss_pred             eEEEEEEEec
Q psy15734        264 GFIKVYVNLV  273 (314)
Q Consensus       264 ~~~~l~V~~~  273 (314)
                      .++.|.|..+
T Consensus        90 ~~~~l~V~~p   99 (102)
T 2eo1_A           90 LSFRLQVAGQ   99 (102)
T ss_dssp             CCEEEEEESC
T ss_pred             EEEEEEEeCC
Confidence            5677777654

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=99.31  E-value=1.3e-11  Score=96.38  Aligned_cols=123  Identities=16%  Similarity=0.144  Sum_probs=78.5

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-ee---eec-------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-DM---IIT-------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~~---~~~-------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +....+.+|+++.|.|.+.+.|  .+.+.|++.+. ..   +..             ..++.+.....  ....+|.|.+
T Consensus         7 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~l~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~~L~I~~   84 (215)
T 1c5d_H            7 SGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTS--KSQVFLKMNS   84 (215)
T ss_dssp             ECCCEECTTCCEEEEEEECSSCTTSCCEEEEEECTTSCCEEEEEECTTCCEECCTTTGGGEEEEEETT--TTEEEEEESS
T ss_pred             CCCeeecCCCcEEEEEEECCCcCCCCeEEEEEECCCCCcEEEEEEcCCCCcEECCcccCcEEEEeeCC--CceEEEEECC
Confidence            4456789999999999999875  57899998531 11   110             11222221111  1235899999


Q ss_pred             cCCCCCeEEEEEEeeCCCC---ceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        243 ILSHQFGSYRCVAVNALGE---TDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      ++.+|+|.|.|.+.|..+.   ....+.|.|...+  .+.+.+..    +..++...+.|.+.++ |.| .+.|.
T Consensus        85 v~~~D~G~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v~W~  159 (215)
T 1c5d_H           85 LQTEDTAIYFCTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEPVTVTWN  159 (215)
T ss_dssp             CCGGGCEEEEEEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCcccCEEEEEEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCCcEEEEc
Confidence            9999999999999987532   2234567776321  23333221    1234455799999997 666 88884

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=99.31  E-value=1.6e-11  Score=85.93  Aligned_cols=83  Identities=12%  Similarity=0.054  Sum_probs=60.1

Q ss_pred             cCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC------CceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         35 VGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN------DHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        35 ~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~------~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      .+..+.|.|.+.|.|.+.++|++++ ..+        ..+.++.....      ....+.|.|.+++..|+|.|+|.|.|
T Consensus        14 ~~~~~~l~c~v~G~P~P~I~W~knG-~~l--------~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~YtC~A~N   84 (126)
T 1he7_A           14 EMHHWCIPFSVDGQPAPSLRWLFNG-SVL--------NETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (126)
T ss_dssp             CCCEEEEEEEECCSSCCEEEEEETT-EEC--------CCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             cCccEEEEEEEeeeCCCeEEEEECC-EEC--------CCCCceeEEEeeccccccccceEEEECcCCCCCCEEEEEEEEE
Confidence            5678999999999999999999954 432        22333322211      11345899999999999999999987


Q ss_pred             C-CCcceeEEEEEEeCCce
Q psy15734        109 V-PMTSQKGYLQVVVPPRI  126 (314)
Q Consensus       109 ~-~~~~~~~~l~v~~~p~~  126 (314)
                      . |.....+.|.|...|.-
T Consensus        85 ~~G~~~~t~~l~v~~~P~~  103 (126)
T 1he7_A           85 PFGQASASIMAAFMDNPFE  103 (126)
T ss_dssp             TTEEEEEEEEECCCSCTTS
T ss_pred             CCCeEEEEEEEEEEcCCCC
Confidence            6 55566677777776643

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=99.31  E-value=5.4e-12  Score=97.59  Aligned_cols=57  Identities=18%  Similarity=0.137  Sum_probs=43.9

Q ss_pred             eecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        187 AFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      +.+|+++.|.|.+   |.+.+.|++++.. +...      ...++     +|.|.+++.+|+|.|+|.+.+.
T Consensus        15 ~~~G~~v~L~C~~---p~~~i~W~k~g~~-l~~~------~~~~~-----~L~i~~v~~~DsG~Y~C~~~~~   71 (204)
T 1sy6_A           15 YQEDGSVLLTCDA---EAKNITWFKDGKM-IGFL------TEDKK-----KWNLGSNAKDPRGMYQCKGSQN   71 (204)
T ss_dssp             CCSSSEEEEEECS---CSSEEEEEETTEE-EEEE------ESSCC-----CEEEEEGGGCCEEEEEEESSSS
T ss_pred             ecCCCeEEEEEcC---CCCEEEEEECCEE-CCCC------CCCCC-----eEEeCCCCcCCCEEEEEEecCC
Confidence            4689999999998   8899999997433 3211      01122     8999999999999999997664

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=99.31  E-value=1.1e-11  Score=98.67  Aligned_cols=130  Identities=18%  Similarity=0.290  Sum_probs=82.9

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeec--CCceeEEecCCC-e---eee--------------cCCceeeeEeeCCeeeE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAF--PASLNYWTNEKG-D---MII--------------TGDDYEDSRLINGYSCH  235 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~-~---~~~--------------~~~~~~~~~~~~~~~~~  235 (314)
                      +.+...+....+.+|++++|.|.+.+.  +.+.+.|++.+. .   .+.              ...++.+.....  ...
T Consensus         2 ~~v~q~p~~v~~~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~   79 (242)
T 1hxm_B            2 GHLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPE--TST   79 (242)
T ss_dssp             CEEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETT--TTE
T ss_pred             CccCcCCceEEecCCCcEEEEEEeCCccccCceEEEEEeCCCCCcEEEEEEecCCceecCCcccCCeEEEEecCC--CcE
Confidence            345667778889999999999999886  678999998531 1   111              112222221111  124


Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCCC-C------ceeEEEEEEEecC-------CCeeEEEE---ccccccEeEEEEEeec
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNALG-E------TDGFIKVYVNLVD-------GDIFQIRK---MSRLHMGAYLCIASNG  298 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~g-~------~~~~~~l~V~~~~-------~~~~~~~~---~~~~~~g~~~C~a~~~  298 (314)
                      .+|.|.+++.+|+|.|.|.+.+... .      ....+.|.|...+       .+.+....   +..++...+.|.+.++
T Consensus        80 ~~L~I~~v~~~D~G~Y~C~~~~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~  159 (242)
T 1hxm_B           80 STLTIHNVEKQDIATYYCALWEAQQELGKKIKVFGPGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKF  159 (242)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEECSSTTCEEEEECCCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEE
T ss_pred             EEEEECCCCcccCEEEEEeeecCCccccccceeEcCcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeE
Confidence            5899999999999999999998641 1      1234567777532       22222111   1124456799999987


Q ss_pred             cC--CCccceE
Q psy15734        299 VV--PSVSHRI  307 (314)
Q Consensus       299 ~~--~~~~w~v  307 (314)
                      .+  +.+.|..
T Consensus       160 ~P~~~~v~W~~  170 (242)
T 1hxm_B          160 FPDVIKIHWEE  170 (242)
T ss_dssp             SSCCEEEEEEE
T ss_pred             ECCCeEEEEEc
Confidence            43  5788863

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=99.31  E-value=2.5e-11  Score=97.31  Aligned_cols=123  Identities=17%  Similarity=0.120  Sum_probs=80.4

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCC-Cee--ee---------------cCCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDM--II---------------TGDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~--~~---------------~~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+.+|++++|.|.+.+.|  .+.+.|++.. +..  .+               ...++.+.....  ....+|.|.+
T Consensus        10 ~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~--~~~~~L~I~~   87 (256)
T 3umt_A           10 GLELVKPGASVKISCKTSGYTFTEYTMHWVKQSHGKSLEWIGGINPNNGGTSYNQKFKGKAILTVDKS--SSTAYLELRS   87 (256)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG--GTEEEEEECS
T ss_pred             CceEEcCCCCEEEEEEEecccccccEEEEEEECCCCCcEEEEEEeccCCcccccccccceEEEEEecC--CCEEEEEECC
Confidence            345689999999999999876  7899998732 111  11               012232222111  1234799999


Q ss_pred             cCCCCCeEEEEEEeeC----CCCceeEEEEEEEecC--------------CCeeEE----EEccccccEeEEEEEeeccC
Q psy15734        243 ILSHQFGSYRCVAVNA----LGETDGFIKVYVNLVD--------------GDIFQI----RKMSRLHMGAYLCIASNGVV  300 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~----~g~~~~~~~l~V~~~~--------------~~~~~~----~~~~~~~~g~~~C~a~~~~~  300 (314)
                      ++.+|+|.|.|.+.|.    .+.......|.|...+              .+.+..    ..+..++...+.|.+.+.+.
T Consensus        88 v~~~DsG~Y~C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~  167 (256)
T 3umt_A           88 LTSEDSAVYYCARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIG  167 (256)
T ss_dssp             CCGGGCEEEEEEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             CCcccCEEEEEEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCC
Confidence            9999999999999997    2323445567676421              222222    23445666779999999988


Q ss_pred             CCccceE
Q psy15734        301 PSVSHRI  307 (314)
Q Consensus       301 ~~~~w~v  307 (314)
                      +.+.|.-
T Consensus       168 ~~v~W~k  174 (256)
T 3umt_A          168 SNLNWLQ  174 (256)
T ss_dssp             TCEEEEE
T ss_pred             cEEEEEE
Confidence            8999954

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=99.31  E-value=1.6e-11  Score=98.24  Aligned_cols=127  Identities=15%  Similarity=0.055  Sum_probs=83.0

Q ss_pred             EcCCCcceeecCccEEEEEEEeecC--CceeEEecCC-Ceee--e---------------cCCceeeeEeeCCeeeEEEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK-GDMI--I---------------TGDDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~-~~~~--~---------------~~~~~~~~~~~~~~~~~s~L  238 (314)
                      ...+....+.+|++++|.|.+.+.+  .+.+.|++.. +..+  .               ...++.+......  ...+|
T Consensus         5 ~~~p~~~~v~~G~~v~L~C~~~g~~~~~~~v~W~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~--~~~~L   82 (253)
T 3uzq_A            5 LEQSGAELVKPGASVRLSCTASGFNIKDTYMSWVKQRPEQGLEWIGRIDPANGDTKYDPKFQGKATITADTSS--NTAYL   82 (253)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT--TEEEE
T ss_pred             EecCCCeeecCCCcEEEEEEeeCCcccCceEEEEEeCCCCCCEEEEEEccCCCcceeCCcCCCcEEEEeecCC--CeEEE
Confidence            3455667899999999999999854  7899999832 2111  1               0122332221111  23479


Q ss_pred             EEeecCCCCCeEEEEEEeeCCCCc-eeEEEEEEEec-------------CCCeeEE----EEccccccEeEEEEEeeccC
Q psy15734        239 KIRSILSHQFGSYRCVAVNALGET-DGFIKVYVNLV-------------DGDIFQI----RKMSRLHMGAYLCIASNGVV  300 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g~~-~~~~~l~V~~~-------------~~~~~~~----~~~~~~~~g~~~C~a~~~~~  300 (314)
                      .|.+++.+|+|.|+|.|.|..+.. .....|.|...             +.+.+..    ..+..++...+.|.+.+.+.
T Consensus        83 ~I~~v~~~DsG~Y~C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~  162 (253)
T 3uzq_A           83 HLSSLTSGDTAVYYCSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVD  162 (253)
T ss_dssp             EECSCCGGGCEEEEEEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCE
T ss_pred             EeCCCCcccCEEEEEEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCccc
Confidence            999999999999999999966544 34556666642             1222222    23445666779999999887


Q ss_pred             C----CccceE
Q psy15734        301 P----SVSHRI  307 (314)
Q Consensus       301 ~----~~~w~v  307 (314)
                      +    .+.|.-
T Consensus       163 ~~~~~~v~W~r  173 (253)
T 3uzq_A          163 RYGNSFMHWYQ  173 (253)
T ss_dssp             ETTEECEEEEE
T ss_pred             cCCCcEEEEEE
Confidence            6    899964

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=99.30  E-value=2.5e-11  Score=97.58  Aligned_cols=123  Identities=11%  Similarity=0.105  Sum_probs=77.8

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-e-e--ee--c------------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D-M--II--T------------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~-~--~~--~------------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+.+|++++|.|.+.+.|  .+.+.|++.+. . .  +.  .            ..++.+.....  .....|.|.
T Consensus        13 p~~~~v~~G~~v~L~C~~~~~~~~~~~v~W~r~~~g~~~~~l~~~~~~~~~~~~~~~~~~R~~~~~~~~--~~~~sL~I~   90 (261)
T 2xqy_G           13 PGAELVKPGASVKMSCKASGYSFTSYWMNWVKQRPGRGLEWIGRIDPSDNETHYNQDFKDKVTLTVDKS--SSTVYIQLS   90 (261)
T ss_dssp             CSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGG--GTEEEEEEC
T ss_pred             CCCEEEcCCCCEEEEEEeCCcccCCceEEEEEeCCCCCcEEEEEEecCCCceeeCCccCCcEEEEecCC--CCEEEEEEc
Confidence            4566799999999999999887  68999998642 1 1  11  0            12222222110  123489999


Q ss_pred             ecCCCCCeEEEEEEeeCCCC---ceeEEEEEEEecC--CCeeEEEE----ccccccEeEEEEEeec-cCC-Cccce
Q psy15734        242 SILSHQFGSYRCVAVNALGE---TDGFIKVYVNLVD--GDIFQIRK----MSRLHMGAYLCIASNG-VVP-SVSHR  306 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g~---~~~~~~l~V~~~~--~~~~~~~~----~~~~~~g~~~C~a~~~-~~~-~~~w~  306 (314)
                      +++.+|+|.|.|.+.|..+.   ....+.|.|...+  .+.+.+..    +..++...+.|.+.++ |.| .+.|.
T Consensus        91 ~v~~~DsG~Y~C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~i~v~W~  166 (261)
T 2xqy_G           91 SLTSEDSAVYYCGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEPVTLTWN  166 (261)
T ss_dssp             SCCGGGCEEEEEEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSCCEEEEG
T ss_pred             CCCcccCeEEEEEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCCCEEEEe
Confidence            99999999999999996431   1133467776421  23333221    2234455799999986 555 78884

>1xau_A B- and T-lymphocyte attenuator; IG domain, beta sandwich, structural genomics, PSI, protein structure initiative; 1.80A {Mus musculus} SCOP: b.1.1.4

Probab=99.30  E-value=1.2e-11  Score=81.49  Aligned_cols=88  Identities=16%  Similarity=0.225  Sum_probs=62.9

Q ss_pred             ceeecCccEEEEEEEee-cCCceeEEecCCCeeeec---CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        185 EGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIIT---GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~---~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ..+..|+++.|.|.+.+ .|.|.+.|.|.++.....   .........+.+......|.|.++..+|+|.|+|.|.|..|
T Consensus        24 ~tv~~G~~~~LeCpv~yc~~rPnVtWcK~~~~~c~~L~~~~q~~~~w~e~~n~s~fiL~f~~V~~sDsG~YrCsAn~~~g  103 (122)
T 1xau_A           24 HSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNSQ  103 (122)
T ss_dssp             EEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETTE
T ss_pred             EEEecCCeEEEEeEecCCCCCCcEEEEecCCeeccccccceeeecceeccCCceeEEEEEeeEEEcCCccEEEEeeCCCC
Confidence            46889999999999976 689999999976533222   11212222233333456999999999999999999999888


Q ss_pred             Cc-eeEEEEEEEe
Q psy15734        261 ET-DGFIKVYVNL  272 (314)
Q Consensus       261 ~~-~~~~~l~V~~  272 (314)
                      .. +.++.|.|..
T Consensus       104 ~ieSHs~ti~V~~  116 (122)
T 1xau_A          104 VINSHSVTIHVRE  116 (122)
T ss_dssp             EEECCCEEEEEC-
T ss_pred             ceeeeEEEEEEEe
Confidence            65 4555666654

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=99.30  E-value=1.4e-11  Score=82.05  Aligned_cols=81  Identities=14%  Similarity=0.188  Sum_probs=61.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      ++.|...|....+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ....          ...|.|.+++.+|+|
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i~W~~~~-~~~--------~~~~----------~~~L~i~~v~~~d~G   63 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHYQWFKNE-LPL--------THET----------KKLYMVPYVDLEHQG   63 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEEEEEETT-EEC--------TTCC----------SSEEEESSCCGGGCE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEEEEEcCC-eeC--------CcCC----------CCeEEECCCCHHhCE
Confidence            567778888899999999999999999898999999954 321        1111          127999999999999


Q ss_pred             EEEEEEecCCCcc--eeEEEEE
Q psy15734        101 WYMCQINTVPMTS--QKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~~~~~--~~~~l~v  120 (314)
                      .|+|.+.|.....  ..+.|.|
T Consensus        64 ~Y~C~a~n~~g~~~s~~~~l~V   85 (91)
T 3bfo_A           64 TYWCHVYNDRDSQDSKKVEIII   85 (91)
T ss_dssp             EEEEEEECSSCEEECCCEEEEE
T ss_pred             EEEEEEEcCCCCEEeeeEEEEE
Confidence            9999998763332  3344554

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=99.29  E-value=1.8e-12  Score=101.63  Aligned_cols=120  Identities=13%  Similarity=0.152  Sum_probs=79.6

Q ss_pred             cceeecCccEEEEEEEeecCC-----ceeEEecCCCeeeec------------CCceeeeEeeCC-eeeEEEEEEeecCC
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA-----SLNYWTNEKGDMIIT------------GDDYEDSRLING-YSCHMTLKIRSILS  245 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~-----p~~~W~~~~~~~~~~------------~~~~~~~~~~~~-~~~~s~L~i~~~~~  245 (314)
                      .+.+.+|+++.|.|.+.+.|.     +.+.|++++......            ..+..+  ..+. .....+|.|.+++.
T Consensus         4 ~v~~~~G~~v~L~C~~~~~~~~~~~~~~v~W~~~~~~~~i~~~~~~~~~~~~~~~r~~~--~~~~~~~~~~sL~I~~v~~   81 (222)
T 4i0k_A            4 PVVALVDTDATLRCSFSPEPGFSLAQLNLIWQLTDTKQLVHSFTEGRDQGSAYSNRTAL--FPDLLVQGNASLRLQRVRV   81 (222)
T ss_dssp             CCCCCTTSCEEECCBCCCCTTCCTTTEEEEEEETTTCCEEEEEETTEEEEESSCSCEEC--CTTTGGGTBCCEEECSCCG
T ss_pred             CEEEECCCCeEEEEEecCCCCCCCCceEEEEEECCCccEEEEEcCCcccccceeCcEEE--ecccccCCeEEEEECCccc
Confidence            456889999999999998865     789999976443110            111111  1100 00123899999999


Q ss_pred             CCCeEEEEEEeeCCCCceeEEEEEEEecCCCe-eEEE---EccccccEeEEEEE-eeccCCCccce
Q psy15734        246 HQFGSYRCVAVNALGETDGFIKVYVNLVDGDI-FQIR---KMSRLHMGAYLCIA-SNGVVPSVSHR  306 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~~~~l~V~~~~~~~-~~~~---~~~~~~~g~~~C~a-~~~~~~~~~w~  306 (314)
                      +|+|.|+|.+.|. +.....+.|.|...+..+ +...   .+..++...+.|.+ .+.|.|.+.|.
T Consensus        82 ~D~G~Y~C~~~~~-~~~~~~~~l~V~~~~~~p~i~~~~~~~v~~G~~~~l~C~~~~g~P~~~v~W~  146 (222)
T 4i0k_A           82 TDEGSYTCFVSIQ-DFDSAAVSLQVAAPYSKPSMTLEPNKDLRPGNMVTITCSSYQGYPEAEVFWK  146 (222)
T ss_dssp             GGCSCEEEEEEEC-CCCCCCCCCCCCBCCCCCEEECCC-----CCSEEEEEEEEEEEBSCCEEEEE
T ss_pred             ccCEEEEEEEEeC-CCceEEEEEEEEcCCCCCcEEeCCCceecCCceEEEEEecccccCCCeEEEE
Confidence            9999999999986 455667777776654333 3222   22334555799999 78888999995

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=99.29  E-value=2.6e-12  Score=112.64  Aligned_cols=86  Identities=21%  Similarity=0.308  Sum_probs=67.8

Q ss_pred             CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .+....+.+|+++.|.|.+.|.|.|.+.|+++++.........+.....++     +|.|.+++.+|+|.|+|.|.|..|
T Consensus       391 ~~~~~~v~~G~~v~l~C~~~g~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~d~G~Y~C~a~N~~g  465 (477)
T 2id5_A          391 KAQQVFVDEGHTVQFVCRADGDPPPAILWLSPRKHLVSAKSNGRLTVFPDG-----TLEVRYAQVQDNGTYLCIAANAGG  465 (477)
T ss_dssp             SCEEEEEETTCCEEECCCEEEESCCEEEEECTTSCBC-------CEECTTS-----CEEESSCCSTTCEEEEEEEEETTE
T ss_pred             ccccEEEeCCCeEEEEEeccccCCCEEEEEECCccccccCCCceEEeCCCC-----EEEEeeCChHHCEEEEEEEEeCCC
Confidence            456778999999999999999999999999986554432222223333445     899999999999999999999999


Q ss_pred             CceeEEEEEEE
Q psy15734        261 ETDGFIKVYVN  271 (314)
Q Consensus       261 ~~~~~~~l~V~  271 (314)
                      .....+.|.|.
T Consensus       466 ~~~~~~~l~V~  476 (477)
T 2id5_A          466 NDSMPAHLHVR  476 (477)
T ss_dssp             EEEEEEEEEEE
T ss_pred             cEEEEEEEEEe
Confidence            99888888875

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	314
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	9e-11
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.002
d1gxea_	130	b.1.1.4 (A:) Cardiac myosin binding protein C, dif	0.004
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	2e-08
d2fdbp2	109	b.1.1.4 (P:2252-2360) Fibroblast growth factor rec	1e-06
d1dr9a1	105	b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (	4e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	5e-08
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	2e-07
d2cqva1	101	b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [T	6e-05
d1ncna_	110	b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human	7e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-08
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	7e-07
d1biha4	89	b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecr	4e-05
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	1e-07
d1f97a2	110	b.1.1.4 (A:129-238) Junction adhesion molecule, JA	0.001
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	1e-07
d1qz1a3	100	b.1.1.4 (A:190-289) Neural cell adhesion molecule	0.004
d1pkoa_	126	b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (	6e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	9e-07
d1nbqa2	104	b.1.1.4 (A:130-233) Junction adhesion molecule, JA	0.002
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	1e-06
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	9e-04
d1fhga_	102	b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo)	0.002
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-06
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	1e-04
d1g1ca_	98	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-06
d3dara1	97	b.1.1.4 (A:153-249) Fibroblast growth factor recep	1e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	2e-06
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	7e-05
d1koaa1	97	b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorha	0.002
d1l6za1	107	b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, C	3e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	3e-06
d3b5ha1	101	b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo	0.001
d2oz4a3	84	b.1.1.4 (A:367-450) Intercellular adhesion molecul	4e-06
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	1e-05
d1cs6a3	91	b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gall	2e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	1e-05
d1cs6a1	97	b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus	0.003
d2nxyb1	97	b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Ho	2e-05
d2avga1	110	b.1.1.4 (A:1-110) Cardiac myosin binding protein C	5e-05
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	1e-04
d1cs6a4	89	b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gall	8e-04
d2crya1	115	b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRR	1e-04
d1biha3	97	b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecr	1e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	2e-04
d1tnna_	91	b.1.1.4 (A:) Titin {Human (Homo sapiens), differen	8e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	2e-04
d1gl4b_	89	b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus muscu	0.004
d1biha1	94	b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropi	2e-04
d1iray3	107	b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor	3e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-04
d1wiua_	93	b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis el	3e-04
d1ccza1	93	b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-ter	3e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	4e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	9e-04
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.002
d1rhfa1	91	b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor	0.003
d1x44a1	90	b.1.1.4 (A:8-97) Myosin-binding protein C, slow-ty	4e-04
d1wwbx_	103	b.1.1.4 (X:) Ligand binding domain of trkB recepto	5e-04
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.001
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.002
d1epfa2	92	b.1.1.4 (A:98-189) Neural cell adhesion molecule (	0.003
d1n26a1	93	b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chai	0.002
d1neua_	119	b.1.1.1 (A:) Myelin membrane adhesion molecule P0	0.003

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 56.6 bits (135), Expect = 9e-11
 Identities = 26/151 (17%), Positives = 39/151 (25%), Gaps = 29/151 (19%)

Query: 123 PPRILLD---RTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLT 179
           PP+I LD   R    +VV  G ++ L+    G P P V W++   +              
Sbjct: 4   PPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQ-------------- 49

Query: 180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLK 239
                         +     E           E    + T  D                 
Sbjct: 50  GNKAPARPAPDAPEDTGDSDEWVFDKKLLCETEGRVRVETTKD------------RSIFT 97

Query: 240 IRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           +        G Y     N +GE    + V V
Sbjct: 98  VEGAEKEDEGVYTVTVKNPVGEDQVNLTVKV 128

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.4 bits (80), Expect = 0.002
 Identities = 18/122 (14%), Positives = 26/122 (21%), Gaps = 17/122 (13%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
             + L       PA    W                    +                    
Sbjct: 25  NKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPED---------------TGDSD 69

Query: 251 YRCVAVNALGETDGFIKVYVNLVDGDIFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVT 310
                   L ET+G ++V     D  IF +    +   G Y     N  V      + V 
Sbjct: 70  EWVFDKKLLCETEGRVRVETTK-DRSIFTVEGAEKEDEGVYTVTVKN-PVGEDQVNLTVK 127

Query: 311 VH 312
           V 
Sbjct: 128 VI 129

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 130

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.004
 Identities = 12/125 (9%), Positives = 28/125 (22%), Gaps = 22/125 (17%)

Query: 18  KPDMPRFAEPVANVTATVGKEALMACVVE--------------------NLREYKVAWVK 57
           K  +         +    G +  +   +                                
Sbjct: 6   KIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDT 65

Query: 58  MITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKG 116
             +   +     +     RV +     RS    +   ++ D G Y   + N V       
Sbjct: 66  GDSDEWVFDKKLLCETEGRVRVETTKDRSI-FTVEGAEKEDEGVYTVTVKNPVGEDQVNL 124

Query: 117 YLQVV 121
            ++V+
Sbjct: 125 TVKVI 129

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 49.6 bits (117), Expect = 2e-08
 Identities = 21/105 (20%), Positives = 39/105 (37%), Gaps = 5/105 (4%)

Query: 22  PRFAEPV-ANVTATVGKEALMACVVENLREYKVAWVK---MITQTILSIHHKVVTQNKRV 77
           P     + AN +  VG +    C V +  +  + W+K                +   K  
Sbjct: 5   PILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAA 64

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
            +   D     L++R+V   D G Y C   N++ ++    +L V+
Sbjct: 65  GVNTTDKEIEVLYIRNVTFEDAGEYTCLAGNSIGISFHSAWLTVL 109

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]} Length = 109

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

 Score = 44.2 bits (103), Expect = 1e-06
 Identities = 19/145 (13%), Positives = 34/145 (23%), Gaps = 42/145 (28%)

Query: 126 ILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLE 185
           IL      +     G +V   C      +P++ W +   K                    
Sbjct: 6   ILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEK-------------------- 45

Query: 186 GAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS 245
                                       G   +           +       L IR++  
Sbjct: 46  --------------------NGSKYGPDGLPYLKVLKAAGVNTTDKEIE--VLYIRNVTF 83

Query: 246 HQFGSYRCVAVNALGETDGFIKVYV 270
              G Y C+A N++G +     + V
Sbjct: 84  EDAGEYTCLAGNSIGISFHSAWLTV 108

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 105

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 48.4 bits (114), Expect = 4e-08
 Identities = 17/100 (17%), Positives = 37/100 (37%), Gaps = 5/100 (5%)

Query: 28  VANVTATVGKEALMACVVE----NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           V +VT  V + A ++C        L + ++ W K     +  +   +    +  + T  D
Sbjct: 1   VIHVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFD 60

Query: 84  HR-SWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
              +  + +  ++ +D G Y C +      + K      V
Sbjct: 61  ITNNLSIVILALRPSDEGTYECVVLKYEKDAFKREHLAEV 100

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 5e-08
 Identities = 19/104 (18%), Positives = 32/104 (30%), Gaps = 11/104 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+  +   +     G+   +   V   +     W+K   Q   S H KV           
Sbjct: 1   PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMKV----------E 50

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
           N      L +   ++   G Y   + N +     +  L VV  P
Sbjct: 51  NSENGSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTVVDKP 94

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 46.8 bits (110), Expect = 2e-07
 Identities = 14/96 (14%), Positives = 27/96 (28%), Gaps = 6/96 (6%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
           P ++  P   +     ++VEL             W   +  +  +         +     
Sbjct: 1   PQIIQFPEDQK-VRAGESVELFGKVTGTQPITCTWMKFRKQIQESEHMK-----VENSEN 54

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
              L I +      G Y  +  N LG     + + V
Sbjct: 55  GSKLTILAARQEHCGCYTLLVENKLGSRQAQVNLTV 90

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.4 bits (91), Expect = 6e-05
 Identities = 10/36 (27%), Positives = 13/36 (36%), Gaps = 2/36 (5%)

Query: 124 PRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
           P+I+  +   D  VR G  V L     G       W
Sbjct: 1   PQII--QFPEDQKVRAGESVELFGKVTGTQPITCTW 34

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 47.9 bits (113), Expect = 7e-08
 Identities = 22/107 (20%), Positives = 38/107 (35%), Gaps = 9/107 (8%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV---------SIT 80
            + A   + A + C   N +   ++ + +  Q   ++    V   K             T
Sbjct: 3   KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRT 62

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVVPPRIL 127
             D  SW L L ++Q  D+G Y C I+    T      Q+     +L
Sbjct: 63  SFDSDSWTLRLHNLQIKDKGLYQCIIHHKKPTGMIRIHQMNSELSVL 109

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 47.4 bits (112), Expect = 7e-08
 Identities = 19/97 (19%), Positives = 29/97 (29%), Gaps = 10/97 (10%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
           P     P ++      Q V + C     PA    W++    +                  
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGG----------RATVT 52

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
              L I+ + +   G Y C A N  G+      V VN
Sbjct: 53  DSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQVN 89

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 44.4 bits (104), Expect = 7e-07
 Identities = 14/60 (23%), Positives = 22/60 (36%), Gaps = 1/60 (1%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPN 182
            P+    +    +VV++G +VT+ C   G P P V W             +    L I  
Sbjct: 2   APKYEQ-KPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRATVTDSGLVIKG 60

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 39.4 bits (91), Expect = 4e-05
 Identities = 17/101 (16%), Positives = 32/101 (31%), Gaps = 17/101 (16%)

Query: 22  PRF-AEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT 80
           P++  +P   +    G++  + C V  L    V W                         
Sbjct: 3   PKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNAKPLSGGRAT------------ 50

Query: 81  FNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
                   L ++ V+  D+G+Y C+  N       +  +QV
Sbjct: 51  ---VTDSGLVIKGVKNGDKGYYGCRATNEHGDKYFETLVQV 88

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 47.3 bits (111), Expect = 1e-07
 Identities = 18/108 (16%), Positives = 33/108 (30%), Gaps = 4/108 (3%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING-- 231
           VPP     +      +     L C          Y   + G  ++T D  +    +N   
Sbjct: 1   VPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSF 60

Query: 232 --YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVDGDI 277
                   L    + +   G Y C A N  G        +++ V+ ++
Sbjct: 61  TIDPKSGDLIFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDAVELNV 108

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 16/102 (15%), Positives = 27/102 (26%), Gaps = 2/102 (1%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P         + T+G  A++ C   +              ++L+   K        S T 
Sbjct: 3   PSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTADAKKTRAFMNSSFTI 62

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV 122
           +           V   D G Y CQ  N      +     +  
Sbjct: 63  DPKSGDL-IFDPVTAFDSGEYYCQAQNGYGTAMRSEAAHMDA 103

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 47.2 bits (111), Expect = 1e-07
 Identities = 27/149 (18%), Positives = 45/149 (30%), Gaps = 53/149 (35%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
           VPP +   ++  +     G  VTL C A G+PEP ++W ++                   
Sbjct: 2   VPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE----------------- 44

Query: 182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIR 241
                             E      + ++++  ++ I   D  D                
Sbjct: 45  --------------PIENEEEDDEKHIFSDDSSELTIRNVDKNDE--------------- 75

Query: 242 SILSHQFGSYRCVAVNALGETDGFIKVYV 270
                    Y C+A N  GE D  I + V
Sbjct: 76  -------AEYVCIAENKAGEQDASIHLKV 97

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 100

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (77), Expect = 0.004
 Identities = 18/98 (18%), Positives = 35/98 (35%), Gaps = 9/98 (9%)

Query: 26  EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHR 85
           + + N TA +G+   + C  +   E  ++W K            +  + +          
Sbjct: 10  QSIVNATANLGQSVTLVCDADGFPEPTMSWTKD--------GEPIENEEEDDEKHIFSDD 61

Query: 86  SWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV 122
           S  L +R+V + D   Y+C   N         +L+V  
Sbjct: 62  SSELTIRNVDKNDEAEYVCIAENKAGEQDASIHLKVFA 99

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 126

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 45.8 bits (107), Expect = 6e-07
 Identities = 20/114 (17%), Positives = 40/114 (35%), Gaps = 14/114 (12%)

Query: 27  PVANVTATVGKEALMACVV---ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           P   + A VG EA + C +   +N    +V W +     ++ ++     Q+   +  +  
Sbjct: 8   PGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRG 67

Query: 84  HRSWF----------LHLRDVQETDRGWYMCQINTVPMTSQKG-YLQVVVPPRI 126
                          L +++V+ +D G Y C         +    L+V  P   
Sbjct: 68  RTELLKESIGEGKVALRIQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFYW 121

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 44.6 bits (104), Expect = 9e-07
 Identities = 20/104 (19%), Positives = 32/104 (30%), Gaps = 3/104 (2%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
           VPP     N    A +     L C  +       Y   + G ++ T      +   + Y 
Sbjct: 1   VPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMPTNPKSTRAFSNSSYV 60

Query: 234 CHM---TLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVNLVD 274
            +     L    + +   G Y C A N  G       V +  V+
Sbjct: 61  LNPTTGELVFDPLSASDTGEYSCEARNGYGTPMTSNAVRMEAVE 104

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 104

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.0 bits (79), Expect = 0.002
 Identities = 10/44 (22%), Positives = 13/44 (29%), Gaps = 3/44 (6%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDG 164
           VPP       +       G    L CS   G P     W ++  
Sbjct: 1   VPPSK--PTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGI 42

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 44.5 bits (104), Expect = 1e-06
 Identities = 22/106 (20%), Positives = 42/106 (39%), Gaps = 11/106 (10%)

Query: 17  EKPDM-PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNK 75
           EKP + P F + + ++    G  A   C VE   + +V W               V +++
Sbjct: 3   EKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWF---------KDDNPVKESR 53

Query: 76  RVSITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
              I +++  +  L + +V   D   Y C+  N++   +    L V
Sbjct: 54  HFQIDYDEEGNCSLTISEVCGDDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 36.0 bits (82), Expect = 9e-04
 Identities = 16/97 (16%), Positives = 27/97 (27%), Gaps = 4/97 (4%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
           V P  T                 C  E +P        +  + +     ++      G  
Sbjct: 7   VKPYFTKTILDMEVVEGSAARFDCKVEGYPDP-EVMWFKDDNPVKESRHFQIDYDEEGNC 65

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
                ++          Y C AVN+LGE     ++ V
Sbjct: 66  SLTISEVCG---DDDAKYTCKAVNSLGEATCTAELLV 99

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]} Length = 102

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 2/41 (4%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
           +  V P     +T  D+ V EG+    +C   GYP+P V W
Sbjct: 4   KPHVKPYFT--KTILDMEVVEGSAARFDCKVEGYPDPEVMW 42

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 44.1 bits (103), Expect = 1e-06
 Identities = 19/100 (19%), Positives = 35/100 (35%), Gaps = 10/100 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P+  E + + T   G +A     V    + +  W           +   + ++ R+   +
Sbjct: 5   PKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWY---------KNGVKIERSDRIYWYW 55

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
            +     L +RDV   D    M +  N    TS   +L V
Sbjct: 56  PEDNVCELVIRDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 14/96 (14%), Positives = 22/96 (22%), Gaps = 4/96 (4%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
            P +    Q +                 P     W      +  +   Y      N    
Sbjct: 4   APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNGVKIERSDRIYWYWPEDNVCEL 63

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +    R +      S    A+N  GET     + V
Sbjct: 64  VI----RDVTGEDSASIMVKAINIAGETSSHAFLLV 95

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 98

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.9 bits (87), Expect = 2e-04
 Identities = 9/37 (24%), Positives = 14/37 (37%), Gaps = 2/37 (5%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
            P+I          V +G++       VG P+P   W
Sbjct: 4   APKIF--ERIQSQTVGQGSDAHFRVRVVGKPDPECEW 38

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 43.6 bits (102), Expect = 1e-06
 Identities = 17/99 (17%), Positives = 30/99 (30%), Gaps = 8/99 (8%)

Query: 176 PMLTIPNQLEGAFVS----QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
           P  T   ++E    +     TV+  C     P     W     +                
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLKNGKEFKQEHRIGGYKVRNQH 61

Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
           +    +L + S++    G+Y CV  N  G  +    + V
Sbjct: 62  W----SLIMESVVPSDKGNYTCVVENEYGSINHTYHLDV 96

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

 Score = 40.9 bits (95), Expect = 1e-05
 Identities = 18/105 (17%), Positives = 31/105 (29%), Gaps = 14/105 (13%)

Query: 22  PRFAEPV----ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRV 77
           P +                      C         + W+K         + K   Q  R+
Sbjct: 2   PYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTMRWLK---------NGKEFKQEHRI 52

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVV 121
                 ++ W L +  V  +D+G Y C + N     +   +L VV
Sbjct: 53  GGYKVRNQHWSLIMESVVPSDKGNYTCVVENEYGSINHTYHLDVV 97

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 43.7 bits (102), Expect = 2e-06
 Identities = 19/104 (18%), Positives = 31/104 (29%), Gaps = 11/104 (10%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PRF           G+ A   C V       V W K   +   S+ +             
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDRELKQSVKYMKRYNGND----- 56

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVVPP 124
                + L +  V+  D+G Y  +  N+     +  +L V    
Sbjct: 57  -----YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNVTRHS 95

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 39.1 bits (90), Expect = 7e-05
 Identities = 13/95 (13%), Positives = 26/95 (27%), Gaps = 5/95 (5%)

Query: 176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCH 235
           P   +          Q+   +C   A    +  W  +  ++           +       
Sbjct: 2   PRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDDREL-----KQSVKYMKRYNGND 56

Query: 236 MTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
             L I  +     G Y   A N+ G  +  + + V
Sbjct: 57  YGLTINRVKGDDKGEYTVRAKNSYGTKEEIVFLNV 91

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 7/26 (26%), Positives = 8/26 (30%)

Query: 134 DVVVREGTEVTLECSAVGYPEPYVAW 159
              V EG      C  +    P V W
Sbjct: 10  GTEVGEGQSANFYCRVIASSPPVVTW 35

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 43.1 bits (101), Expect = 3e-06
 Identities = 9/103 (8%), Positives = 22/103 (21%), Gaps = 7/103 (6%)

Query: 26  EPVANVTATVGKEALMAC--VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
           E V           L+    +   L  +                    +        ++ 
Sbjct: 5   EAV-PPQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSG 63

Query: 84  H----RSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQVVV 122
                 +  L  + +   D G Y   +        +  ++  V
Sbjct: 64  REIIYSNGSLLFQMITMKDMGVYTLDMTDENYRRTQATVRFHV 106

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 43.1 bits (100), Expect = 3e-06
 Identities = 18/99 (18%), Positives = 34/99 (34%), Gaps = 3/99 (3%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY--WTNEKGDMIITGDDYEDSRLINGY 232
           PP +      E     +T  L C +E+ P   ++  +     +     +  E    ++  
Sbjct: 2   PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSS 61

Query: 233 SCHMTLKIRSILSHQF-GSYRCVAVNALGETDGFIKVYV 270
                L I ++      G YRC   ++ G     I + V
Sbjct: 62  QGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]} Length = 101

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.8 bits (81), Expect = 0.001
 Identities = 17/100 (17%), Positives = 31/100 (31%), Gaps = 3/100 (3%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           PR     ++     G+ A++ C  E++             T       +     R  ++ 
Sbjct: 3   PRVKAVKSSEHINEGETAMLVCKSESVPPVTD--WAWYKITDSEDKALMNGSESRFFVSS 60

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
           +  RS         E D G Y C   ++         L+V
Sbjct: 61  SQGRSELHIENLNMEADPGQYRCNGTSSKGSDQAIITLRV 100

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]} Length = 84

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 42.3 bits (98), Expect = 4e-06
 Identities = 9/42 (21%), Positives = 16/42 (38%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDG 164
            PR+       +    E ++ T  C A G P P +   ++  
Sbjct: 2   GPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGT 43

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.3 bits (96), Expect = 1e-05
 Identities = 19/100 (19%), Positives = 28/100 (28%), Gaps = 14/100 (14%)

Query: 174 VPPMLTI--PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLING 231
             P +    P     A   Q V L C     P     W    G                 
Sbjct: 3   YAPSIKAKFPADTY-ALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW----------- 50

Query: 232 YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN 271
            S    L I+++     G+Y C A N  G      ++ ++
Sbjct: 51  LSSEPLLHIQNVDFEDEGTYECEAENIKGRDTYQGRIIIH 90

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 40.2 bits (93), Expect = 2e-05
 Identities = 15/39 (38%), Positives = 17/39 (43%), Gaps = 1/39 (2%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWR 160
             P I   +   D     G  VTLEC A G P P + WR
Sbjct: 3   YAPSIKA-KFPADTYALTGQMVTLECFAFGNPVPQIKWR 40

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 41.0 bits (95), Expect = 1e-05
 Identities = 16/74 (21%), Positives = 25/74 (33%), Gaps = 6/74 (8%)

Query: 189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQF 248
             + V L C   A P +   W     ++ +  D                +    + +   
Sbjct: 21  AEEKVTLTCRARANPPATYRWKMNGTELKMGPDSRYR------LVAGDLVISNPVKAKDA 74

Query: 249 GSYRCVAVNALGET 262
           GSY+CVA NA G  
Sbjct: 75  GSYQCVATNARGTV 88

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 34.5 bits (78), Expect = 0.003
 Identities = 10/42 (23%), Positives = 13/42 (30%), Gaps = 5/42 (11%)

Query: 123 PPRILLDRTSTDVVVREGTE---VTLECSAVGYPEPYVAWRR 161
            P           +  EG+    VTL C A   P     W+ 
Sbjct: 4   GPVFE--EQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKM 43

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 40.1 bits (93), Expect = 2e-05
 Identities = 13/83 (15%), Positives = 28/83 (33%), Gaps = 7/83 (8%)

Query: 31  VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV-----TQNKRVSITFN--D 83
           V    G    + C     +  +  W       IL      +       N R     +  D
Sbjct: 4   VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWD 63

Query: 84  HRSWFLHLRDVQETDRGWYMCQI 106
             ++ L +++++  D   Y+C++
Sbjct: 64  QGNFPLIIKNLKIEDSDTYICEV 86

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]} Length = 110

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 39.6 bits (91), Expect = 5e-05
 Identities = 19/103 (18%), Positives = 30/103 (29%), Gaps = 5/103 (4%)

Query: 22  PRFAEPVANVTATVGKEALMACVVE---NLREYKVAWVKMITQTILSIHHKVVTQNKRVS 78
             F     +   TVG     +  V     L+   V W K     + S   + +  +    
Sbjct: 5   GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYD 64

Query: 79  ITFNDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
                +    LH+ D Q    G Y C++            L V
Sbjct: 65  RASKVYLF-ELHITDAQPAFTGGYRCEVSTKDKFDCSNFNLTV 106

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 16/100 (16%), Positives = 27/100 (27%), Gaps = 15/100 (15%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
           P + + + +  A +G +   +CV        V W++                    S   
Sbjct: 2   PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD--------------GQPLASQNR 47

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQV 120
            +     L    +   D G Y C   N          L V
Sbjct: 48  IEVSGGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 17/96 (17%), Positives = 27/96 (28%), Gaps = 10/96 (10%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
           P  L +    E A +   +   C     P     W           D    +        
Sbjct: 2   PDWLDVITDTE-ADIGSDLRWSCVASGKPRPAVRWLR---------DGQPLASQNRIEVS 51

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
              L+   ++    G Y+CVA N  G      ++ V
Sbjct: 52  GGELRFSKLVLEDSGMYQCVAENKHGTVYASAELTV 87

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

 Score = 35.6 bits (81), Expect = 8e-04
 Identities = 10/27 (37%), Positives = 13/27 (48%)

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAW 159
           TD     G+++   C A G P P V W
Sbjct: 9   TDTEADIGSDLRWSCVASGKPRPAVRW 35

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]} Length = 115

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 38.9 bits (89), Expect = 1e-04
 Identities = 17/100 (17%), Positives = 35/100 (35%), Gaps = 4/100 (4%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
            PP+++       A   +  ++ C   + P       + K +++ +G     +       
Sbjct: 6   GPPIISSTQTQH-ALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTE 64

Query: 234 C--HMTLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
                TL I +I  +     Y C A N+ G     I++  
Sbjct: 65  EGVISTLTISNIVRADFQTIYNCTAWNSFGSDTEIIRLKE 104

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 97

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 38.3 bits (88), Expect = 1e-04
 Identities = 7/40 (17%), Positives = 15/40 (37%), Gaps = 4/40 (10%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAWRR 161
             P+ +    S D++ + G    + C     P  Y  + +
Sbjct: 4   PVPQYV----SKDMMAKAGDVTMIYCMYGSNPMGYPNYFK 39

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 37.5 bits (86), Expect = 2e-04
 Identities = 12/80 (15%), Positives = 28/80 (35%), Gaps = 5/80 (6%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           ++    C T+  P     W  +   +  +         +       T +I S+ +   G+
Sbjct: 15  ESARFSCDTDGEPVPTVTWLRKGQVLSTSARHQ-----VTTTKYKSTFEISSVQASDEGN 69

Query: 251 YRCVAVNALGETDGFIKVYV 270
           Y  V  N+ G+ +    + +
Sbjct: 70  YSVVVENSEGKQEAEFTLTI 89

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

 Score = 36.0 bits (82), Expect = 8e-04
 Identities = 11/41 (26%), Positives = 15/41 (36%), Gaps = 8/41 (19%)

Query: 119 QVVVPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
           +++  PR         + V EG      C   G P P V W
Sbjct: 1   RILTKPR--------SMTVYEGESARFSCDTDGEPVPTVTW 33

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 37.6 bits (86), Expect = 2e-04
 Identities = 14/97 (14%), Positives = 30/97 (30%), Gaps = 10/97 (10%)

Query: 175 PPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
           P M+T+   + +       V   C  ++   +         +  +     +         
Sbjct: 1   PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDF-------- 52

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            +  L IR++     G+Y C   N      G   ++V
Sbjct: 53  -NGILTIRNVQPSDAGTYVCTGSNMFAMDQGTATLHV 88

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]} Length = 89

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

 Score = 33.8 bits (76), Expect = 0.004
 Identities = 15/61 (24%), Positives = 23/61 (37%), Gaps = 2/61 (3%)

Query: 123 PPRILLDRTSTDVVVREGTEVTLECSAV-GYPEPYVAWRREDGKAINYNGELVPPMLTIP 181
           P  + ++       VR G +VT  C+A    P   + W R     +         +LTI 
Sbjct: 1   PIMVTVEE-QRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLPSRAMDFNGILTIR 59

Query: 182 N 182
           N
Sbjct: 60  N 60

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]} Length = 94

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

 Score = 37.3 bits (85), Expect = 2e-04
 Identities = 13/88 (14%), Positives = 21/88 (23%), Gaps = 5/88 (5%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
            P+L           +    L C  E     + Y   + G      +             
Sbjct: 2   YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKSYNWQEHN-----AALRKD 56

Query: 235 HMTLKIRSILSHQFGSYRCVAVNALGET 262
             +L      +   G Y+C A    G  
Sbjct: 57  EGSLVFLRPQASDEGHYQCFAETPAGVA 84

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 107

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.8 bits (86), Expect = 3e-04
 Identities = 14/104 (13%), Positives = 31/104 (29%), Gaps = 8/104 (7%)

Query: 175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSC 234
           P +++  N+     +   ++L C+     + + YW      +        +         
Sbjct: 2   PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNGSVIDEDDPVLGEDYYSVENPA 61

Query: 235 HM-------TLKIRSI-LSHQFGSYRCVAVNALGETDGFIKVYV 270
           +         L I  I        + C A N  G    +I++  
Sbjct: 62  NKRRSTLITVLNISEIESRFYKHPFTCFAKNTHGIDAAYIQLIY 105

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 16/97 (16%), Positives = 30/97 (30%), Gaps = 5/97 (5%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
           + P +   ++        T  L       P     WT       +  +       ++  S
Sbjct: 1   LKPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSGAALAPELL-----VDAKS 55

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
              ++   S      G+Y+    N LGE +   +V V
Sbjct: 56  STTSIFFPSAKRADSGNYKLKVKNELGEDEAIFEVIV 92

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

 Score = 37.3 bits (85), Expect = 3e-04
 Identities = 11/38 (28%), Positives = 18/38 (47%), Gaps = 2/38 (5%)

Query: 122 VPPRILLDRTSTDVVVREGTEVTLECSAVGYPEPYVAW 159
           + P+IL    S  + ++ G    LE   +G P+P   W
Sbjct: 1   LKPKIL--TASRKIKIKAGFTHNLEVDFIGAPDPTATW 36

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 37.2 bits (85), Expect = 3e-04
 Identities = 12/92 (13%), Positives = 30/92 (32%), Gaps = 2/92 (2%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
            +   V              + +V W K   +     + +    +   +  + D  S  L
Sbjct: 4   QIYGVVYGNVTFHVPSNVPLK-EVLWKKQKDKVAELENSEFRAFSSFKNRVYLDTVSGSL 62

Query: 90  HLRDVQETDRGWYMCQINTVPMTSQKGYLQVV 121
            + ++  +D   Y  +   +   + K +L V+
Sbjct: 63  TIYNLTSSDEDEYEMESPNI-TDTMKFFLYVL 93

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 4e-04
 Identities = 10/29 (34%), Positives = 14/29 (48%)

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRR 161
             + V +G  V L CS  G  EP + W +
Sbjct: 4   VKLTVSQGQPVKLNCSVEGMEEPDIQWVK 32

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 35.7 bits (81), Expect = 9e-04
 Identities = 24/93 (25%), Positives = 38/93 (40%), Gaps = 10/93 (10%)

Query: 30  NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFL 89
            +T + G+   + C VE + E  + WVK            V   ++        H   FL
Sbjct: 5   KLTVSQGQPVKLNCSVEGMEEPDIQWVKD--------GAVVQNLDQLYIPVSEQHWIGFL 56

Query: 90  HLRDVQETDRGWYMCQI-NTV-PMTSQKGYLQV 120
            L+ V+ +D G Y CQ+ +      SQ  +L V
Sbjct: 57  SLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 11/71 (15%), Positives = 20/71 (28%), Gaps = 3/71 (4%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           Q V+L+C  E        W  +   +      Y      +         ++S+     G 
Sbjct: 12  QPVKLNCSVEGMEEPDIQWVKDGAVVQNLDQLYIPVSEQHWIGFL---SLKSVERSDAGR 68

Query: 251 YRCVAVNALGE 261
           Y C   +    
Sbjct: 69  YWCQVEDGGET 79

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 91

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.2 bits (77), Expect = 0.003
 Identities = 8/35 (22%), Positives = 15/35 (42%)

Query: 277 IFQIRKMSRLHMGAYLCIASNGVVPSVSHRIMVTV 311
              ++ + R   G Y C   +G    +S  + +TV
Sbjct: 55  FLSLKSVERSDAGRYWCQVEDGGETEISQPVWLTV 89

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]} Length = 90

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.7 bits (84), Expect = 4e-04
 Identities = 12/82 (14%), Positives = 25/82 (30%), Gaps = 9/82 (10%)

Query: 24  FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND 83
             + + + TA  G+   + C V    +  V W K   + I     +   +         +
Sbjct: 3   VTKQLEDTTAYCGERVELECEVSE-DDANVKWFKNGEEIIPGPKSRYRIRV--------E 53

Query: 84  HRSWFLHLRDVQETDRGWYMCQ 105
            +   L +    + D   Y   
Sbjct: 54  GKKHILIIEGATKADAAEYSVM 75

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]} Length = 103

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 36.9 bits (84), Expect = 5e-04
 Identities = 15/97 (15%), Positives = 28/97 (28%), Gaps = 3/97 (3%)

Query: 174 VPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYS 233
             P +T    LE         +    +  P     W      +  +        + N   
Sbjct: 3   FAPTIT---FLESPTSDHHWCIPFTVKGNPKPALQWFYNGAILNESKYICTKIHVTNHTE 59

Query: 234 CHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYV 270
            H  L++ +      G Y  +A N  G+ +  I  + 
Sbjct: 60  YHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQISAHF 96

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 35.7 bits (81), Expect = 0.001
 Identities = 11/66 (16%), Positives = 20/66 (30%)

Query: 133 TDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQT 192
           T    +EG +  + C  V    P + W+ +    I         +     Q+ G   +  
Sbjct: 9   TPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVRFIVLSNNYLQIRGIKKTDE 68

Query: 193 VELHCH 198
               C 
Sbjct: 69  GTYRCE 74

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.5 bits (78), Expect = 0.002
 Identities = 19/102 (18%), Positives = 35/102 (34%), Gaps = 12/102 (11%)

Query: 22  PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITF 81
             F           G++A++ C V +     + W       IL    +           F
Sbjct: 2   LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR-----------F 50

Query: 82  NDHRSWFLHLRDVQETDRGWYMCQI-NTVPMTSQKGYLQVVV 122
               + +L +R +++TD G Y C+             +QV+V
Sbjct: 51  IVLSNNYLQIRGIKKTDEGTYRCEGRILARGEINFKDIQVIV 92

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 92

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.1 bits (77), Expect = 0.003
 Identities = 15/81 (18%), Positives = 26/81 (32%), Gaps = 6/81 (7%)

Query: 191 QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGS 250
           +   + C   +       W ++  D+I+  D             +  L+IR I     G+
Sbjct: 17  EDAVIVCDVVSSLPPTIIWKHKGRDVILKKDVR------FIVLSNNYLQIRGIKKTDEGT 70

Query: 251 YRCVAVNALGETDGFIKVYVN 271
           YRC           F  + V 
Sbjct: 71  YRCEGRILARGEINFKDIQVI 91

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]} Length = 93

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

 Score = 34.9 bits (79), Expect = 0.002
 Identities = 18/103 (17%), Positives = 24/103 (23%), Gaps = 14/103 (13%)

Query: 19  PDMPRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRV 77
              P        +T+  G    + C      +   V WV                     
Sbjct: 4   RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAAGSHPSRWA------- 56

Query: 78  SITFNDHRSWFLHLRDVQETDRGWYMCQINTVPMTSQKGYLQV 120
                      L LR VQ  D G Y C     P  +    + V
Sbjct: 57  ------GMGRRLLLRSVQLHDSGNYSCYRAGRPAGTVHLLVDV 93

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]} Length = 119

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

 Score = 34.9 bits (79), Expect = 0.003
 Identities = 11/111 (9%), Positives = 29/111 (26%), Gaps = 17/111 (15%)

Query: 29  ANVTATVGKEALMACVVE----NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDH 84
             V   VG +  + C          +    W         +I      + +         
Sbjct: 7   REVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTF 66

Query: 85  RSWF------------LHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVVV 122
           +               + + ++  +D G + C +   P +  +   + + V
Sbjct: 67  KERIQWVGDPSWKDGSIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYV 117

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	314
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.77
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.76
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.75
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.75
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.74
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.74
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.72
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.7
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.7
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.7
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.69
d2avga1	110	Cardiac myosin binding protein C, different domain	99.68
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.68
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.67
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.67
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.67
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.66
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.66
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.66
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	99.66
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.66
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.65
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.65
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.64
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.64
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.64
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.63
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	99.63
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.63
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.62
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.62
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.61
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	99.61
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.61
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.6
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.6
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	99.6
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.6
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.58
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.57
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.56
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	99.55
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.55
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.55
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.55
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.54
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.54
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.53
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.53
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	99.52
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.52
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.52
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.52
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.52
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.51
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.51
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.51
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.5
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	99.5
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.5
d2avga1	110	Cardiac myosin binding protein C, different domain	99.5
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.49
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.49
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	99.48
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	99.48
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.48
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.47
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	99.46
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	99.46
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.46
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	99.45
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.45
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	99.44
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	99.44
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	99.44
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	99.43
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	99.42
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	99.42
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	99.41
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.41
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	99.4
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.4
d1gxea_	130	Cardiac myosin binding protein C, different domain	99.39
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.39
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	99.37
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.37
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	99.36
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	99.36
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	99.36
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	99.35
d1pd6a_	94	Cardiac myosin binding protein C, different domain	99.35
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	99.34
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.34
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	99.33
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	99.33
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.33
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	99.33
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.32
d1f2qa2	89	IgE high affinity receptor alpha subunit {Human (H	99.31
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.3
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	99.28
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	99.27
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	99.24
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.23
d1olza1	92	Semaphorin 4d Ig-like domain {Human (Homo sapiens)	99.21
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	99.21
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.18
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	99.18
d1iray1	101	Type-1 interleukin-1 receptor {Human (Homo sapiens	99.17
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	99.17
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	99.16
d1he7a_	107	High affinity nerve growth factor receptor TrkA, d	99.13
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.11
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	99.1
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	99.07
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	99.06
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	99.01
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	99.0
d1iray2	103	Type-1 interleukin-1 receptor {Human (Homo sapiens	98.99
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.99
d1hnga1	98	CD2, first domain {Rat (Rattus norvegicus) [TaxId:	98.98
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.96
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.96
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.94
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.93
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.92
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	98.92
d1l6za1	107	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-t	98.89
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.88
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.87
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.87
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.86
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.86
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.86
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.86
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.85
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.84
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.83
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	98.82
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.81
d2nxyb1	97	CD4 V-set domains {Human (Homo sapiens) [TaxId: 96	98.81
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.81
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.8
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.8
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.8
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.8
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.79
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.79
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.79
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.78
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.78
d2cdea1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.78
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.77
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.77
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.77
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.76
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.76
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.76
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	98.75
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.75
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.75
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.75
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.74
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.74
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.74
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.74
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.72
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.72
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.71
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.71
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.7
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.7
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.7
d3bp5a1	114	Programmed cell death protein 1, PD1, extracellula	98.7
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	98.69
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.69
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.69
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.69
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.69
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.68
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.68
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.67
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.67
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	98.67
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.67
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.66
d1xeda_	116	Polymeric-immunoglobulin receptor, PIGR {Human (Ho	98.65
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.65
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.65
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.65
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.65
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.64
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.64
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.61
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.61
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.61
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.61
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.61
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.61
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.61
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.6
d1vesa_	113	Novel antigen receptor 12Y-2 {Spotted wobbegong (O	98.6
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.6
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.59
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	98.59
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	98.59
d1i8ka_	106	Immunoglobulin light chain kappa variable domain,	98.59
d1a0ql1	106	Immunoglobulin light chain kappa variable domain,	98.59
d1j8hd1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.59
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.58
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.58
d1sq2n_	112	Novel antigen receptor (against lysozyme) {Nurse s	98.58
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.57
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.57
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.56
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.56
d1neua_	119	Myelin membrane adhesion molecule P0 {Rat (Rattus	98.55
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.55
d1kcvl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.53
d1c5cl1	107	Immunoglobulin light chain kappa variable domain,	98.53
d1ospl1	107	Immunoglobulin light chain kappa variable domain,	98.52
d1i9ea_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.52
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.5
d1akjd_	114	CD8 {Human (Homo sapiens) [TaxId: 9606]}	98.5
d2ij0c1	118	T-cell antigen receptor {Human (Homo sapiens), bet	98.49
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	98.48
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.48
d1mexl1	107	Immunoglobulin light chain kappa variable domain,	98.48
d1jhll_	108	Immunoglobulin light chain kappa variable domain,	98.48
d2ak4d1	114	T-cell antigen receptor {Human (Homo sapiens), alp	98.48
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.47
d1op3k1	106	Immunoglobulin light chain kappa variable domain,	98.47
d1u3ha1	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.46
d1j1pl_	107	Immunoglobulin light chain kappa variable domain,	98.46
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.46
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	98.45
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.45
d3cx5k1	107	Immunoglobulin light chain kappa variable domain,	98.45
d1dr9a1	105	CD80, N-terminal domain {Human (Homo sapiens) [Tax	98.44
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.44
d1hkfa_	108	NK cell activating receptor NKP44 {Human (Homo sap	98.44
d1d5il1	107	Immunoglobulin light chain kappa variable domain,	98.44
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	98.43
d1fo0a_	115	T-cell antigen receptor {Mouse (Mus musculus), alp	98.43
d1bd2d1	111	T-cell antigen receptor {Human (Homo sapiens), alp	98.43
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.43
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	98.42
d8faba1	103	Immunoglobulin light chain lambda variable domain,	98.41
d1tjgl1	107	Immunoglobulin light chain kappa variable domain,	98.41
d1ypzf1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.4
d1mqkl_	109	Immunoglobulin light chain kappa variable domain,	98.4
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.4
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.39
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	98.39
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	98.38
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	98.38
d1smoa_	113	TREM-1 (triggering receptor expressed on myeloid c	98.38
d2gj6d1	94	T-cell antigen receptor {Mouse (Mus musculus), bet	98.38
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.38
d2fx7l1	108	Immunoglobulin light chain kappa variable domain,	98.38
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.37
d1lk3l1	106	Immunoglobulin light chain kappa variable domain,	98.37
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	98.36
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.36
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	98.35
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.35
d1o0va1	104	Immunoglobulin heavy chain epsilon constant domain	98.35
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	98.35
d1ogad1	115	T-cell antigen receptor {Human (Homo sapiens), alp	98.35
d2aq2a1	110	T-cell antigen receptor {Mouse (Mus musculus), bet	98.34
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.34
d1ac6a_	110	T-cell antigen receptor {Mouse (Mus musculus), alp	98.34
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.33
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	98.33
d1bwwa_	109	Immunoglobulin light chain kappa variable domain,	98.32
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1h5ba_	113	T-cell antigen receptor {Mouse (Mus musculus), alp	98.32
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.32
d1ucta2	96	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	98.31
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	98.31
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d1ncna_	110	CD86 (b7-2), N-terminal domain {Human (Homo sapien	98.31
d1xaua_	104	B and T lymphocyte attenuator, Btla {Mouse (Mus mu	98.31
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	98.31
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.3
d2g5ra1	121	N-terminal domain of sialic acid binding Ig-like l	98.3
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	98.3
d1mjul1	112	Immunoglobulin light chain kappa variable domain,	98.3
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	98.29
d1hxmb1	123	T-cell antigen receptor {Human (Homo sapiens), del	98.29
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	98.29
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	98.29
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.29
d2rhea_	114	Immunoglobulin light chain lambda variable domain,	98.29
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	98.29
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.28
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1oaql_	110	Immunoglobulin light chain lambda variable domain,	98.28
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	98.28
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	98.28
d2esvd1	110	T-cell antigen receptor {Human (Homo sapiens), alp	98.28
d1dn0b2	105	Immunoglobulin heavy chain mu constant domain 1, C	98.28
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	98.28
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.28
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	98.27
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	98.27
d1j05a_	111	Immunoglobulin light chain kappa variable domain,	98.26
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	98.26
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	98.25
d2gsia1	111	Immunoglobulin light chain kappa variable domain,	98.25
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	98.25
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	98.25
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	98.24
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.24
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	98.24
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	98.24
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	98.24
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	98.23
d1f3rb2	119	Immunoglobulin light chain kappa variable domain,	98.23
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	98.23
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	98.23
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	98.23
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	98.22
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.22
d2esve1	111	T-cell antigen receptor {Human (Homo sapiens), bet	98.21
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	98.21
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	98.21
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	98.21
d1qfoa_	118	N-terminal domain of sialoadhesin {Mouse (Mus musc	98.21
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	98.21
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	98.2
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	98.2
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	98.2
d1ncwl1	112	Immunoglobulin light chain kappa variable domain,	98.2
d1fp5a1	103	Immunoglobulin heavy chain epsilon constant domain	98.19
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	98.19
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.19
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	98.19
d1nfde2	104	Immunoglobulin light chain lambda constant domain,	98.19
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	98.19
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	98.19
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	98.19
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	98.18
d1ogae1	114	T-cell antigen receptor {Human (Homo sapiens), bet	98.18
d1rzfl1	111	Immunoglobulin light chain lambda variable domain,	98.18
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	98.18
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	98.18
d1q9ra1	113	Immunoglobulin light chain kappa variable domain,	98.17
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	98.17
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	98.17
d1kgce1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.17
d1kgcd1	112	T-cell antigen receptor {Human (Homo sapiens), alp	98.16
d1nfde1	108	Immunoglobulin light chain lambda variable domain,	98.16
d1cd0a_	111	Immunoglobulin light chain lambda variable domain,	98.15
d1fo0b_	112	T-cell antigen receptor {Mouse (Mus musculus), bet	98.15
d1yqvl1	104	Immunoglobulin light chain kappa variable domain,	98.14
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	98.13
d1hxmb2	107	T-cell antigen receptor {Human (Homo sapiens), del	98.13
d1igtb4	102	Immunoglobulin heavy chain gamma constant domain 3	98.13
d1w72l1	109	Immunoglobulin light chain lambda variable domain,	98.13
d1j8he1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.12
d1u9ka_	110	TREM-1 (triggering receptor expressed on myeloid c	98.12
d2bnub1	112	T-cell antigen receptor {Human (Homo sapiens), bet	98.12
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	98.11
d2ntsp1	113	T-cell antigen receptor {Human (Homo sapiens), bet	98.1
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	98.1
d1olla2	93	Ligand binding domain of NK receptor NKp46 {Human	98.09
d1n4xl_	113	Immunoglobulin light chain kappa variable domain,	98.09
d1l6xa2	102	Immunoglobulin heavy chain gamma constant domain 3	98.09
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	98.08
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	98.08
d1lgva1	112	Immunoglobulin light chain lambda variable domain,	98.06
d1ymmd1	96	T-cell antigen receptor {Human (Homo sapiens), alp	98.06
d1cqka_	101	Immunoglobulin heavy chain gamma constant domain 3	98.05
d1nfdb1	113	T-cell antigen receptor {Mouse (Mus musculus), bet	98.03
d1i1ca2	102	Immunoglobulin heavy chain gamma constant domain 3	98.01
d1uvqb1	97	Class II MHC beta chain, C-terminal domain {Human	98.01
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	98.01
d1nkra2	99	Killer cell inhibitory receptor {Human (Homo sapie	98.01
d1ow0a2	108	Immunoglobulin heavy chain alpha constant domain 3	98.01
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	98.0
d1dqta_	117	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	98.0
d1i1ca1	103	Immunoglobulin heavy chain gamma constant domain 2	97.99
d2cdeb1	112	T-cell antigen receptor {Human (Homo sapiens), bet	97.99
d1hdma1	103	Class II MHC alpha chain, C-terminal domain {Human	97.99
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.98
d1ugna1	96	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.97
d1kcvh2	101	Immunoglobulin heavy chain gamma constant domain 1	97.97
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.97
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.96
d2agjh1	120	Immunoglobulin heavy chain variable domain, VH {En	97.96
d2h26a1	96	CD1, alpha-3 domain {Human (Homo sapiens), CD1a [T	97.96
d1igtb3	119	Immunoglobulin heavy chain gamma constant domain 2	97.95
d1nkra1	96	Killer cell inhibitory receptor {Human (Homo sapie	97.93
d1mjul2	107	Immunoglobulin light chain kappa constant domain,	97.92
d1kxvc_	119	Camelid IG heavy chain variable domain, VHh {Camel	97.92
d1l6xa1	105	Immunoglobulin heavy chain gamma constant domain 2	97.91
d1ugna2	98	Ligand binding domain of lir-1 (ilt2) {Human (Homo	97.91
d1c5cl2	107	Immunoglobulin light chain kappa constant domain,	97.91
d1f3dh1	115	Immunoglobulin heavy chain variable domain, VH {Mo	97.87
d1i8lc_	118	Immunoreceptor CTLA-4 (CD152), N-terminal fragment	97.87
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.87
d1ogae2	127	T-cell antigen receptor {Human (Homo sapiens), bet	97.86
d1iqdb1	117	Immunoglobulin heavy chain variable domain, VH {Hu	97.85
d1c5db1	117	Immunoglobulin heavy chain variable domain, VH {Ra	97.84
d1nlbh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.82
d7fabh1	116	Immunoglobulin heavy chain variable domain, VH {Hu	97.81
d1r0ah1	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.81
d1jpth1	117	Immunoglobulin heavy chain variable domain, VH {En	97.8
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.8
d1dn0b1	120	Immunoglobulin heavy chain variable domain, VH {Hu	97.79
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.79
d1qnzh_	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d3b5ha2	80	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.78
d2ck0h1	109	Immunoglobulin heavy chain variable domain, VH {Mo	97.78
d2fbjh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.77
d1mjuh2	102	Immunoglobulin heavy chain gamma constant domain 1	97.77
d1a2yb_	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1oari_	103	Immunoglobulin heavy chain variable domain, VH {Ra	97.75
d1mfah1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.75
d1pg7x1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.74
d1yjdc1	118	CD28 {Human (Homo sapiens) [TaxId: 9606]}	97.74
d1mjuh1	116	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1ncwh1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.73
d1indh1	114	Immunoglobulin heavy chain variable domain, VH {Mo	97.71
d1nfdf1	121	Immunoglobulin heavy chain variable domain, VH {Ha	97.71
d1zvya1	124	Camelid IG heavy chain variable domain, VHh {Camel	97.7
d1eapb1	119	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1jnhb1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.69
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	97.68
d1ct8b1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1ai1h1	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d2jelh1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.68
d1j05b_	121	Immunoglobulin heavy chain variable domain, VH {Mo	97.66
d1n0xh1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.65
d1i3ua_	127	Camelid IG heavy chain variable domain, VHh {Llama	97.65
d1um5h1	117	Immunoglobulin heavy chain variable domain, VH {Mo	97.65
d1tjgh1	132	Immunoglobulin heavy chain variable domain, VH {En	97.65
d1ieha_	135	Camelid IG heavy chain variable domain, VHh {Llama	97.65
d1ow0a1	101	Immunoglobulin heavy chain alpha constant domain 2	97.63
d1mqkh_	123	Immunoglobulin heavy chain variable domain, VH {Mo	97.62
d1dfbh1	126	Immunoglobulin heavy chain variable domain, VH {Hu	97.61
d2nxyd1	128	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1rhhb1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.6
d1etzb1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.59
d2b1hh1	124	Immunoglobulin heavy chain variable domain, VH {En	97.57
d1bz7b1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1rz7h1	119	Immunoglobulin heavy chain variable domain, VH {Hu	97.56
d3cx5j1	127	Immunoglobulin heavy chain variable domain, VH {Mo	97.56
d1sjva_	107	Camelid IG heavy chain variable domain, VHh {Llama	97.55
d1lmka1	126	Immunoglobulin heavy chain variable domain, VH {Mo	97.55
d1dlfh_	120	Immunoglobulin heavy chain variable domain, VH {Mo	97.54
d1xiwa_	91	CD3 epsilon chain ectodomain fragment {Human (Homo	97.54
d1fn4b1	116	Immunoglobulin heavy chain variable domain, VH {Ra	97.54
d1vgeh1	122	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d2fb4h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.51
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	97.5
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	97.5
d1ad9b1	120	Immunoglobulin heavy chain variable domain, VH {En	97.5
d1op3h1	125	Immunoglobulin heavy chain variable domain, VH {En	97.5
d1rzfh1	133	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	97.49
d1rzga1	130	Immunoglobulin heavy chain variable domain, VH {Hu	97.49
d2fx7h1	127	Immunoglobulin heavy chain variable domain, VH {Hu	97.48
d1lo4h1	118	Immunoglobulin heavy chain variable domain, VH {Mo	97.48
d1q9rb1	122	Immunoglobulin heavy chain variable domain, VH {Mo	97.47
d1rihh1	125	Immunoglobulin heavy chain variable domain, VH {Mo	97.46
d1ol0a_	121	Immunoglobulin heavy chain variable domain, VH {En	97.45
d2p49b1	121	Camelid IG heavy chain variable domain, VHh {Camel	97.44
d1rjca1	126	Camelid IG heavy chain variable domain, VHh {Camel	97.42
d1fltx_	95	Second domain of the Flt-1 receptor {Human (Homo s	97.42
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	97.41
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	97.41
d1c5ch2	103	Immunoglobulin heavy chain gamma constant domain 1	97.33
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	97.33
d1jbja2	100	CD3 epsilon chain ectodomain fragment {Mouse (Mus	97.32
d1yedb1	124	Immunoglobulin heavy chain variable domain, VH {Mo	97.32
d1d5mb1	98	Class II MHC beta chain, C-terminal domain {Human	97.32
d3d85d1	87	The p40 domain of interleukin-12 (IL-12 beta chain	97.32
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	97.31
d1igyb3	116	Immunoglobulin heavy chain gamma constant domain 2	97.28
d3c2ah1	131	Immunoglobulin heavy chain variable domain, VH {Hu	97.27
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	97.23
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	97.22
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	97.19
d1b2wh1	117	Immunoglobulin heavy chain variable domain, VH {En	97.15
d1pfca_	111	Immunoglobulin heavy chain gamma constant domain 3	97.12
d2fbjh2	102	Immunoglobulin heavy chain alpha constant domain 1	97.11
d1u58a1	98	Immunomodulatory protein m144, alpha-3 domain {Mur	97.08
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	97.07
d1fnga1	101	Class II MHC alpha chain, C-terminal domain {Mouse	97.04
d1q0xl2	102	Immunoglobulin light chain lambda constant domain,	97.04
d1uvqa1	99	Class II MHC alpha chain, C-terminal domain {Human	97.03

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.77  E-value=1.3e-18  Score=117.18  Aligned_cols=97  Identities=16%  Similarity=0.158  Sum_probs=81.2

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.|...+....+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+.    ++|.|.++..+|+|.|+|.|
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-~~~l~~~~~~~~~~~~~~----~~L~I~~~~~~D~G~Y~C~a   75 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKF-RKQIQESEHMKVENSENG----SKLTILAARQEHCGCYTLLV   75 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEES-SSBCCCSSSEEEEECSSE----EEEEETTCCTTTCEEEEEEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeC-ceeeccCCcEEEEEecce----eEEEEeeCCcccCEEEEEEE
Confidence            4566677888899999999999999999999999997 445556666665543332    58999999999999999999


Q ss_pred             eeCCCCceeEEEEEEEecCCCe
Q psy15734        256 VNALGETDGFIKVYVNLVDGDI  277 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~~~~~~~  277 (314)
                      .|..|..+.++.|.|...|.++
T Consensus        76 ~N~~G~~~~~~~l~V~~~P~pP   97 (101)
T d2cqva1          76 ENKLGSRQAQVNLTVVDKPDPP   97 (101)
T ss_dssp             ECSSCEEECCEEEEEECSCSCC
T ss_pred             EECCCEEEEEEEEEEEecCCCc
Confidence            9999999999999999887653

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.76  E-value=5.4e-18  Score=113.47  Aligned_cols=94  Identities=18%  Similarity=0.116  Sum_probs=78.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+....+.+|+.+.|.|.+.|.|.|.+.|+++ +..+....+.......++   .+.|.|.++..+|+|.|+|.
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~c~   79 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKN-GVKIERSDRIYWYWPEDN---VCELVIRDVTGEDSASIMVK   79 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCCSSEEEEEEETT---EEEEEECSCCGGGCEEEEEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeC-ceEEeeeeeeEEEeccce---EEEEEeccCccccCEEEEEE
Confidence            57788788889999999999999999999999999997 444555555444433333   35899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|.......|.|+.
T Consensus        80 a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          80 AINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999999999998864

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.75  E-value=4.2e-18  Score=114.90  Aligned_cols=94  Identities=19%  Similarity=0.345  Sum_probs=79.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....++   .++|.|.++..+|+|.|+|.
T Consensus         8 ~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-~~~i~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~   83 (102)
T d1fhga_           8 KPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKD-DNPVKESRHFQIDYDEEG---NCSLTISEVCGDDDAKYTCK   83 (102)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEET-TEECCCSSSEEEEECTTC---EEEEEESSCCGGGCEEEEEE
T ss_pred             CCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEee-eccccceeeEeEEEecCc---eeeeEecCCCHHhCEEEEEE
Confidence            57787788889999999999999999999999999997 555556666665544443   35899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEe
Q psy15734        255 AVNALGETDGFIKVYVNL  272 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|..|....++.|.|+.
T Consensus        84 a~N~~G~~~~~~~L~V~s  101 (102)
T d1fhga_          84 AVNSLGEATCTAELLVET  101 (102)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EEECCcEEEEEEEEEEEE
Confidence            999999999999998864

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.75  E-value=1.5e-18  Score=115.95  Aligned_cols=96  Identities=16%  Similarity=0.197  Sum_probs=79.3

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+....++.+....+    .+.|.|.++..+|+|.|+|.
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~-~~~l~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~C~   75 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKD-DRELKQSVKYMKRYNGN----DYGLTINRVKGDDKGEYTVR   75 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEET-TEECCSBTTBBCCCSTT----EEEEEESCCCSGGGSCEEEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEe-eeccceeeEEEEEecCC----eeEEEeCCCceecCEEEEEE
Confidence            37788888899999999999999999999999999997 45555555554432222    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEEecCC
Q psy15734        255 AVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |.|..|.....+.|.|...+.
T Consensus        76 a~N~~G~~~~~~~l~V~~~~~   96 (97)
T d1koaa1          76 AKNSYGTKEEIVFLNVTRHSE   96 (97)
T ss_dssp             EEETTEEEEEEECCEEECSCC
T ss_pred             EEECCCEEEEEEEEEEeecCC
Confidence            999999999999999876543

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.74  E-value=3e-18  Score=113.57  Aligned_cols=92  Identities=16%  Similarity=0.160  Sum_probs=76.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.|..++.+..+.+|+++.|.|.+.|.|.|.+.|++++. .+....++......+    .+.|.|.++..+|+|.|+|.
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~-~i~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~   76 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDS-GAALAPELLVDAKSS----TTSIFFPSAKRADSGNYKLK   76 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSS-SCBCSTTSEEEEETT----EEEEECTTBCGGGCEEEEEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeee-eceeeeeeeeccccc----ceeeccccccccccEEEEEE
Confidence            5788888889999999999999999999999999999754 444455554443322    34899999999999999999


Q ss_pred             EeeCCCCceeEEEEEEE
Q psy15734        255 AVNALGETDGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V~  271 (314)
                      |.|..|..+..+.|.|+
T Consensus        77 a~N~~G~~~~~~~l~V~   93 (93)
T d1wiua_          77 VKNELGEDEAIFEVIVQ   93 (93)
T ss_dssp             EEETTEEEEEEEEEEEC
T ss_pred             EEECCCEEEEEEEEEEC
Confidence            99999999999988873

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.74  E-value=9.1e-18  Score=109.93  Aligned_cols=87  Identities=20%  Similarity=0.301  Sum_probs=74.4

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.|...+.+..+..|+++.|.|.+.|.|.|.+.|+++ +..+....++.+   .++     .|.|.++..+|+|.|+|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~-g~~i~~~~~~~~---~~~-----~L~i~~v~~~D~G~Y~C~a   72 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRD-GQPLASQNRIEV---SGG-----ELRFSKLVLEDSGMYQCVA   72 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEET-TEECCCCSSEEE---ETT-----EEEESSCCGGGCEEEEEEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEe-eccccccceeee---eee-----eEEEEeecccCCEEEEEEE
Confidence            6777788889999999999999999999999999997 555555554433   334     8999999999999999999


Q ss_pred             eeCCCCceeEEEEEEE
Q psy15734        256 VNALGETDGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~  271 (314)
                      .|..|....++.|.|+
T Consensus        73 ~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          73 ENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEEE
Confidence            9999999999888885

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.72  E-value=1.1e-17  Score=110.18  Aligned_cols=86  Identities=20%  Similarity=0.230  Sum_probs=70.3

Q ss_pred             CCeEEc-CCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTI-PNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.|.. .+....+.+|+++.|.|.+.|.|.|.+.|+++++......      ...++     +|.|.++..+|+|.|+|
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~~~------~~~~~-----~L~I~~v~~~D~G~Y~C   72 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTSKW------LSSEP-----LLHIQNVDFEDEGTYEC   72 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSCCC------SBSSS-----EEEECSCCGGGCEEEEE
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccceEe------eeeee-----EEEeCCCCccCCEEEEE
Confidence            455554 4678889999999999999999999999999765432211      12233     89999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYVN  271 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~  271 (314)
                      .|.|..|.....+.|.|+
T Consensus        73 ~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          73 EAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEEE
Confidence            999999999999988875

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.70  E-value=2e-17  Score=111.09  Aligned_cols=94  Identities=26%  Similarity=0.454  Sum_probs=69.7

Q ss_pred             CCeEEcCCCc--ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceee-eEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQL--EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYED-SRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~--~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~-~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ||.|...+..  ..+..|+++.|.|.+.|.|.|.+.|++++. .+........ ......   .++|.|.++..+|+|.|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g~-~i~~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y   78 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDGE-PIENEEEDDEKHIFSDD---SSELTIRNVDKNDEAEY   78 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETTE-ECCCC--CCSSEEECTT---SCEEEECSCCGGGCEEE
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCCc-ccccccccceeEEeecC---ceEEEeCCCCcccCEEE
Confidence            5667655443  356789999999999999999999999744 3332222111 111111   23899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEe
Q psy15734        252 RCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +|.|.|..|.....+.|.|..
T Consensus        79 ~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          79 VCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             EEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEECCCEEEEEEEEEEEE
Confidence            999999999999999998864

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.70  E-value=4.5e-17  Score=105.35  Aligned_cols=76  Identities=13%  Similarity=0.151  Sum_probs=65.4

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+.+|++++|.|.+.|.|+|.+.|++++......          +.     .|.|.++..+|+|.|+|.|.|..|...
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~~----------~~-----~l~i~~v~~~DsG~Y~C~a~N~~g~~~   72 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQG----------GK-----TLSVSQLELQDSGTWTCTVLQNQKKVE   72 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEEE----------SS-----EEEESSCCGGGCEEEEEEEEETTEEEE
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeecccceee----------ee-----eeeeeecccccccEEEEEEEeCCCEEE
Confidence            456899999999999999999999999976554332          22     899999999999999999999999999


Q ss_pred             eEEEEEEEecC
Q psy15734        264 GFIKVYVNLVD  274 (314)
Q Consensus       264 ~~~~l~V~~~~  274 (314)
                      ..+.|.|...|
T Consensus        73 ~~~~v~V~~~~   83 (84)
T d2nxyb2          73 FKIDIVVLAFQ   83 (84)
T ss_dssp             EEEEECEECCC
T ss_pred             EEEEEEEEecC
Confidence            99998887553

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.70  E-value=7.8e-18  Score=110.99  Aligned_cols=88  Identities=15%  Similarity=0.273  Sum_probs=72.2

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ...|.+..+.+|+++.|.|.+.|.|.|.+.|++++ ..+....++.+.....    .+.|.|.++..+|+|.|+|.|.|.
T Consensus         3 i~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g-~~l~~~~~~~~~~~~~----~~~L~i~~v~~~D~G~Y~C~a~N~   77 (91)
T d1tnna_           3 LTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKG-QVLSTSARHQVTTTKY----KSTFEISSVQASDEGNYSVVVENS   77 (91)
T ss_dssp             SBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSS-STTCSSSSCEEEECSS----EEEEECSSCCSCCCEEEEEECBCS
T ss_pred             EeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEee-cccccccceeeeeecc----eeEEeecCCCHHHCEEEEEEEEEC
Confidence            34667788999999999999999999999999974 4454555554433322    358999999999999999999999


Q ss_pred             CCCceeEEEEEEE
Q psy15734        259 LGETDGFIKVYVN  271 (314)
Q Consensus       259 ~g~~~~~~~l~V~  271 (314)
                      .|....++.|.|+
T Consensus        78 ~G~~~~~~~l~V~   90 (91)
T d1tnna_          78 EGKQEAEFTLTIQ   90 (91)
T ss_dssp             SCBCCEEEEEECC
T ss_pred             CCEEEEEEEEEEE
Confidence            9999999888774

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.69  E-value=4.5e-17  Score=106.62  Aligned_cols=86  Identities=21%  Similarity=0.300  Sum_probs=69.0

Q ss_pred             CCeEEcCC-CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPN-QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.|...+ ....+.+|+++.|.|.+.|.|.|.+.|++++ ..+ ...++.+   .+.     .|.|.++..+|+|.|+|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~-~~i-~~~~~~~---~~~-----~L~i~~v~~~d~G~Y~C   71 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA-KPL-SGGRATV---TDS-----GLVIKGVKNGDKGYYGC   71 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETT-EEC-CSSSEEE---ETT-----EEEESSCCSTTCEEEEE
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCC-ccC-ccccEEE---eee-----eEEECCCChhhCEEEEE
Confidence            35666554 5567889999999999999999999999974 333 3333332   233     79999999999999999


Q ss_pred             EEeeCCCCceeEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|..|.....+.|.|
T Consensus        72 ~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          72 RATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEETTEEEEEEEEEEE
T ss_pred             EEEECCCEEEEEEEEEE
Confidence            99999999988888876

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.68  E-value=2.5e-16  Score=107.65  Aligned_cols=97  Identities=11%  Similarity=0.038  Sum_probs=74.9

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecC---CceeEEecCCCeeeecCCceeeeE----eeCCeeeEEEEEEeecCCCCC
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFP---ASLNYWTNEKGDMIITGDDYEDSR----LINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~~~~~~~~~~~----~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      +.|...|.+..+..|++++|.|.+.|.|   .|.+.|++++...+.......+..    ........+.|.|.+++.+|+
T Consensus         5 ~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~   84 (110)
T d2avga1           5 GLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSSKVGQHLQLHDSYDRASKVYLFELHITDAQPAFT   84 (110)
T ss_dssp             CSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTTTCSSSEEEEEEEETTTTEEEEEEEEESCCTTCC
T ss_pred             CEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecccCCceeEeeeeeEEecccCEEEEEEeccCHHHC
Confidence            4566677888999999999999999999   688999997544433332222211    112233456899999999999


Q ss_pred             eEEEEEEeeCCCCceeEEEEEEEe
Q psy15734        249 GSYRCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       249 G~Y~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|+|.|.|..|.+++++.|.|..
T Consensus        85 G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          85 GGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEES
T ss_pred             cEEEEEEEECCCeEEEEEEEEEEe
Confidence            999999999999999999999874

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.68  E-value=7.2e-17  Score=106.37  Aligned_cols=90  Identities=20%  Similarity=0.218  Sum_probs=72.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +.|...|....+.+|+++.|.|.+.|.|.|.+.|+++++. +............++     +|.|.+++.+|+|.|+|.|
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~-i~~~~~~~~~~~~~~-----~L~I~~~~~~D~G~Y~C~a   75 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD-VILKKDVRFIVLSNN-----YLQIRGIKKTDEGTYRCEG   75 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEE-GGGGCCTTEEECTTS-----CEEETTCCGGGCEEEEEEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcc-cccccceeeeeeeee-----eEEECCCCHHhCEEEEEEE
Confidence            5677788889999999999999999999999999997544 444444444444555     8999999999999999999


Q ss_pred             eeCCCCceeEEEEEEE
Q psy15734        256 VNALGETDGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~  271 (314)
                      .|..+.......|.|.
T Consensus        76 ~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          76 RILARGEINFKDIQVI   91 (92)
T ss_dssp             EEGGGTEEEEEEEEEE
T ss_pred             EECcCCEEEEEEEEEE
Confidence            9988877666666653

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.5e-16  Score=107.54  Aligned_cols=94  Identities=18%  Similarity=0.241  Sum_probs=72.4

Q ss_pred             EcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...+....+.+|+++.|.|.+.|.| .|.+.|+++++...............+.......|.|.++..+|+|.|+|.|.|
T Consensus         7 i~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~A~N   86 (104)
T d2aw2a1           7 IKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKLEDRQTSWKEEKNISFFILHFEPVLPNDNGSYRCSANF   86 (104)
T ss_dssp             CCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEECCSSCEEEEECSSCEEEEEEESSCCGGGCEEEEEEEEE
T ss_pred             EecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCcccccccceeeeeEEecCCceEEEEEEccccHHHCCeEEEEEEc
Confidence            3455667899999999999999999 489999998766555444444333333333445899999999999999999999


Q ss_pred             CCCCc-eeEEEEEEEe
Q psy15734        258 ALGET-DGFIKVYVNL  272 (314)
Q Consensus       258 ~~g~~-~~~~~l~V~~  272 (314)
                      ..|.. +.++.|.|.+
T Consensus        87 ~~G~~~s~~~~l~V~e  102 (104)
T d2aw2a1          87 QSNLIESHSTTLYVTD  102 (104)
T ss_dssp             TTEEEECCCEEEEEEC
T ss_pred             CCCeEEEEEEEEEEEE
Confidence            99975 4578887764

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.67  E-value=4.8e-16  Score=103.57  Aligned_cols=91  Identities=15%  Similarity=0.183  Sum_probs=71.0

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      +.+.|....+.+|+++.|.|.+.|.|+ |.+.|+++++..+.. ..++........   .++|.|.++..+|+|.|+|.|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~~~~~~~~~~~~~~~---~~~L~I~~~~~~D~G~Y~C~a   79 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLSPNQQRISVVWNDDD---SSTLTIYNANIDDAGIYKCVV   79 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEECCBSSSEEEEEEETT---EEEEEECSCCGGGCEEEEEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeeeeccccEEEEeecCc---ceEEEcccCchhhceEEEEEE
Confidence            556777788999999999999999985 799999976665443 344444333332   358999999999999999999


Q ss_pred             eeCCCCc-eeEEEEEEE
Q psy15734        256 VNALGET-DGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~-~~~~~l~V~  271 (314)
                      .|..|.. ++++.|.|.
T Consensus        80 ~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          80 TAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EETTTEEEEEEEEEEEE
T ss_pred             EeCCCcEEEEEEEEEEE
Confidence            9999965 456777764

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.67  E-value=1.4e-16  Score=104.18  Aligned_cols=87  Identities=14%  Similarity=0.151  Sum_probs=68.0

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      |+.+..++....+.+|+++.|.|.+. |.|.|.+.|++.+.....      .. ..+   ..++|.|.+++.+|+|.|+|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~~------~~-~~~---~~~~L~i~~v~~~D~G~Y~C   72 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLGA------VQ-SDT---GRSVLTVRNASLSAAGTRVC   72 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTCC------EE-EES---SEEEEEECSCCGGGCEEEEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeeee------ee-ccC---ceeeEEcCccChhhCCcEEE
Confidence            34455566667889999999999885 899999999987543210      11 111   13599999999999999999


Q ss_pred             EEeeCCCCceeEEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYVN  271 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V~  271 (314)
                      .|.|..|..++++.|.|.
T Consensus        73 ~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          73 VGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCcEEEEEEEEEC
Confidence            999999999999998874

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.66  E-value=7e-17  Score=107.63  Aligned_cols=83  Identities=20%  Similarity=0.373  Sum_probs=64.6

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+..|+++.|.|.+.|.|.|.+.|++++.. +....++......+.   .++|.|.++..+|+|.|+|.|.|..|...
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng~~-l~~~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~   89 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNGKE-FKQEHRIGGYKVRNQ---HWSLIMESVVPSDKGNYTCVVENEYGSIN   89 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETTEE-CCGGGSTTCCEEEGG---GTEEEECSCCGGGCEEEEEEEEETTEEEE
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECCEe-ccccCceeeEEEcCC---cEEEEECCCCcccCEEEEEEEEECCCEEE
Confidence            34678999999999999999999999997444 433333222111111   12899999999999999999999999999


Q ss_pred             eEEEEEE
Q psy15734        264 GFIKVYV  270 (314)
Q Consensus       264 ~~~~l~V  270 (314)
                      .++.|.|
T Consensus        90 ~~~~l~V   96 (97)
T d3dara1          90 HTYHLDV   96 (97)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            9988877

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.4e-16  Score=103.77  Aligned_cols=87  Identities=16%  Similarity=0.166  Sum_probs=68.2

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |.+..+.+|+++.|.|.+.|.|.|.+.|+++ +..+....+..+......  ..+.|.|.+++.+|+|.|+|.|.|..|.
T Consensus         3 P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~-g~~l~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   79 (91)
T d1rhfa1           3 PVKLTVSQGQPVKLNCSVEGMEEPDIQWVKD-GAVVQNLDQLYIPVSEQH--WIGFLSLKSVERSDAGRYWCQVEDGGET   79 (91)
T ss_dssp             CEEEEEETTCCEEEEEEEESCSSCCEEEEET-TEECCSSEEEEEEEETTE--EEEEEEESSCCGGGCEEEEEEESSCTTC
T ss_pred             CeeEEEcCCCeEEEEEEEEecCCceEEEEEe-ecccccceeeeeeecccC--ceeeEEECCCCcccCEEEEEEEEECCCC
Confidence            4567889999999999999999999999997 444444444333333322  3458999999999999999999999997


Q ss_pred             c-eeEEEEEEE
Q psy15734        262 T-DGFIKVYVN  271 (314)
Q Consensus       262 ~-~~~~~l~V~  271 (314)
                      . +..+.|.|.
T Consensus        80 ~~S~~~~l~V~   90 (91)
T d1rhfa1          80 EISQPVWLTVE   90 (91)
T ss_dssp             EECCCEEEEEE
T ss_pred             EEEEEEEEEEE
Confidence            5 567888775

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=107.21  Aligned_cols=96  Identities=18%  Similarity=0.147  Sum_probs=69.5

Q ss_pred             CCeEEcC-CCcceeecCccEEEEEEEeecCCceeEEecCCCeeee---cCCce--ee---eEeeCCeeeEEEEEEeecCC
Q psy15734        175 PPMLTIP-NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMII---TGDDY--ED---SRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       175 ~p~~~~~-~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~---~~~~~--~~---~~~~~~~~~~s~L~i~~~~~  245 (314)
                      +|.|... |.+..+.+|+++.|.|.+.|.|.|.+.|++++.....   .....  ..   ..........+.|.|.++..
T Consensus         4 ~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   83 (109)
T d2fdbp2           4 RPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVTF   83 (109)
T ss_dssp             CCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCCG
T ss_pred             CCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCCH
Confidence            4677654 6888999999999999999999999999986432111   11000  00   00111112346899999999


Q ss_pred             CCCeEEEEEEeeCCCCceeEEEEEE
Q psy15734        246 HQFGSYRCVAVNALGETDGFIKVYV  270 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g~~~~~~~l~V  270 (314)
                      +|+|.|+|.|.|..|...+++.|.|
T Consensus        84 ~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          84 EDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHCeEEEEEEEECCCEEEEEEEEEE
Confidence            9999999999999999999998877

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=3e-16  Score=105.55  Aligned_cols=93  Identities=22%  Similarity=0.321  Sum_probs=71.9

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeee---ecC--CceeeeEeeCCeeeEEEEEEeecC-CCC
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMI---ITG--DDYEDSRLINGYSCHMTLKIRSIL-SHQ  247 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~---~~~--~~~~~~~~~~~~~~~s~L~i~~~~-~~d  247 (314)
                      ||.|...+....+.+|+.+.|.|.+.|.|+| .+.|++++....   ...  .++.+....    ..+.|.|.++. .+|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~~~~~~~~~~~~~~~~----~~~~L~I~~v~~~~D   77 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKALMNGSESRFFVSSSQ----GRSELHIENLNMEAD   77 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEECCTTGGGTEEEEEET----TEEEEEECSCCTTTS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeeecccCCCceEEEEeCC----CEEEEEEeccccccC
Confidence            6888888888899999999999999999988 688998643221   111  222222222    23589999998 579


Q ss_pred             CeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        248 FGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +|.|+|.|.|..|..+..+.|.|+
T Consensus        78 ~G~Y~C~A~N~~G~~~~~~~L~Vr  101 (101)
T d3b5ha1          78 PGQYRCNGTSSKGSDQAIITLRVR  101 (101)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEEC
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEC
Confidence            999999999999999999988873

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=1.1e-15  Score=102.52  Aligned_cols=94  Identities=14%  Similarity=0.233  Sum_probs=75.9

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |.|+..+..+.+.+|+++.|.|.+.+.+.+.+.|++++..         +..+.++.+...+.. ..|.|.+++.+|+|.
T Consensus         1 P~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~~~~---------l~~~~~~~~~~~~~~-~~L~I~~~~~~D~G~   70 (101)
T d2cqva1           1 PQIIQFPEDQKVRAGESVELFGKVTGTQPITCTWMKFRKQ---------IQESEHMKVENSENG-SKLTILAARQEHCGC   70 (101)
T ss_dssp             CEESCCCCSEEEETTCCEEEEEEEESSSSCEEEEEESSSB---------CCCSSSEEEEECSSE-EEEEETTCCTTTCEE
T ss_pred             CeEEeeCCcEEEeCCCcEEEEEEEEecCCCEEEEEeCcee---------eccCCcEEEEEecce-eEEEEeeCCcccCEE
Confidence            6788888999999999999999999999999999995543         234456666554433 379999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEEeCCc
Q psy15734        102 YMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      |+|.+.|. |..+..+.|.|..+|.
T Consensus        71 Y~C~a~N~~G~~~~~~~l~V~~~P~   95 (101)
T d2cqva1          71 YTLLVENKLGSRQAQVNLTVVDKPD   95 (101)
T ss_dssp             EEEEEECSSCEEECCEEEEEECSCS
T ss_pred             EEEEEEECCCEEEEEEEEEEEecCC
Confidence            99999876 5666777888887664

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.66  E-value=2.1e-16  Score=108.61  Aligned_cols=98  Identities=12%  Similarity=0.057  Sum_probs=74.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC---CceeEEecCCCeeeecC--CceeeeE--eeCCeeeEEEEEEeecCCCCCeE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP---ASLNYWTNEKGDMIITG--DDYEDSR--LINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~~~~--~~~~~~~--~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                      |...|.+..+.+|+++.|.|.+.|.|   .|.+.|++++.......  ..+....  ........+.|.|.+++.+|+|.
T Consensus         3 F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~D~G~   82 (113)
T d2dava1           3 FIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLASKAGKHLQLKETFERHSRVYTFEMQIIKAKDNFAGN   82 (113)
T ss_dssp             CCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHHHHTTSSEEEEEEEETTTTEEEEEEEECSCCTTSCEE
T ss_pred             EeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccccccceeeeeccceeeEeecCEEEEEEccCCHHHCeE
Confidence            45567888999999999999999998   58999999754433222  2222211  11222345689999999999999


Q ss_pred             EEEEEeeCCCCceeEEEEEEEecCC
Q psy15734        251 YRCVAVNALGETDGFIKVYVNLVDG  275 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~~l~V~~~~~  275 (314)
                      |+|.|.|..|..++++.|.|...++
T Consensus        83 Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          83 YRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             EEEEEECSSCEEEECCEEEEECCCC
T ss_pred             EEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            9999999999999999999986654

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=2.1e-16  Score=103.69  Aligned_cols=82  Identities=18%  Similarity=0.211  Sum_probs=65.2

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      .....+.+|+++.|.|.+.|.|.|.+.|+++++... ....  .  ...   ..++|.|.++..+|+|.|+|.|.|..|.
T Consensus         8 ~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~-~~~~--~--~~~---~~~~L~I~~v~~~d~G~Y~C~a~N~~g~   79 (90)
T d1vcaa2           8 ESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL-NGKV--T--NEG---TTSTLTMNPVSFGNEHSYLCTATCESRK   79 (90)
T ss_dssp             SSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC-SSEE--E--EET---TEEEEEESSCCGGGCSEEEEEEEETTEE
T ss_pred             CCcEEEECCCEEEEEEeccCCCCceEEEEecCccce-eeee--e--eec---CCcEEEEecccccccceEEEEEEeCCCE
Confidence            344567799999999999999999999998755432 2111  1  111   2348999999999999999999999999


Q ss_pred             ceeEEEEEEE
Q psy15734        262 TDGFIKVYVN  271 (314)
Q Consensus       262 ~~~~~~l~V~  271 (314)
                      .++++.|.|.
T Consensus        80 ~~~~~~v~V~   89 (90)
T d1vcaa2          80 LEKGIQVEIY   89 (90)
T ss_dssp             EEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            9999999885

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.65  E-value=4.8e-16  Score=104.56  Aligned_cols=87  Identities=15%  Similarity=0.129  Sum_probs=69.0

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEE
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ..++...+.|.+.|+|.|.+.|+++ +..+..+....+... .......+.|.|.+++.+|+|.|+|.|.|..|.+++++
T Consensus        14 ~~~~~~~i~~~v~G~P~P~i~W~~~-g~~l~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~   92 (103)
T d1wwbx_          14 TSDHHWCIPFTVKGNPKPALQWFYN-GAILNESKYICTKIHVTNHTEYHGCLQLDNPTHMNNGDYTLIAKNEYGKDEKQI   92 (103)
T ss_dssp             CCCCEEEEEEEEECSSCCEEEEEET-TEEECCCSSEEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEECSSCEEEEEE
T ss_pred             ccceeEEEEEEEEEeCCCEEEEEEC-CEEeeeeeeeeeeecccccccceEEEEECCCCHHhCceEEEEEeccCCEEEEEE
Confidence            4677888999999999999999996 555555554444322 22233456899999999999999999999999999999


Q ss_pred             EEEEEecCC
Q psy15734        267 KVYVNLVDG  275 (314)
Q Consensus       267 ~l~V~~~~~  275 (314)
                      .|.|..+|+
T Consensus        93 ~v~V~~~P~  101 (103)
T d1wwbx_          93 SAHFMGWPG  101 (103)
T ss_dssp             EECCSCCCC
T ss_pred             EEEEEeCCC
Confidence            998877764

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.64  E-value=4.8e-16  Score=101.89  Aligned_cols=87  Identities=23%  Similarity=0.386  Sum_probs=68.4

Q ss_pred             CCeEEc-CCCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        175 PPMLTI-PNQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       175 ~p~~~~-~~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      |+.+.+ .+....+.+|+++.|.|.+. +.|.|.+.|++++..... ..    ....++     .|.|.++..+|+|.|+
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~~-~~----~~~~~~-----~L~i~~v~~~d~G~Y~   70 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKLP-SR----AMDFNG-----ILTIRNVQPSDAGTYV   70 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCCC-TT----EEEETT-----EEEECSCCGGGCEEEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceeec-cc----cEeece-----EEEEecCCcccCEEEE
Confidence            344444 56777899999999999997 678899999997544332 21    122344     8999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEE
Q psy15734        253 CVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~  271 (314)
                      |.|.|..|.....+.|.|+
T Consensus        71 C~a~N~~G~~~~~~~l~V~   89 (89)
T d1gl4b_          71 CTGSNMFAMDQGTATLHVQ   89 (89)
T ss_dssp             EEEECSSCEEEEEEEEEEC
T ss_pred             EEEEECCCEEEEEEEEEEC
Confidence            9999999999999888873

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.64  E-value=3.2e-16  Score=101.19  Aligned_cols=81  Identities=16%  Similarity=0.140  Sum_probs=63.5

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |.|...+.+..+.+|+++.|.|.+.|.|.| .+.|++++ ..+....        .     +.+.|.....+|+|.|+|.
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g-~~i~~~~--------~-----~~~~l~~~~~~d~G~Y~C~   67 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGT-TKIGGPA--------P-----SPSVLNVTGVTQSTMFSCE   67 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETT-EECSCSE--------E-----SSEEEEECCCSSCEEEEEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECC-EECCCCC--------C-----cceEEecCCccccEEEEEE
Confidence            778888888999999999999999999998 89999974 3332211        1     1455666677899999999


Q ss_pred             EeeCCCCc-eeEEEEEE
Q psy15734        255 AVNALGET-DGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~-~~~~~l~V  270 (314)
                      |.|..|.. ++.+.|.|
T Consensus        68 A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          68 AHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEETTEEEECCCEEEEE
T ss_pred             EEcCCCcEEEEEEEEEE
Confidence            99999965 45677766

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.64  E-value=6.9e-16  Score=102.69  Aligned_cols=86  Identities=16%  Similarity=0.196  Sum_probs=65.4

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      +.+..+.+|+++.|.|.+.|.|.|.+.|++++.. +.......+......  ..++|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g~~-i~~~~~~~~~~~~~~--~~~~L~I~~~~~~D~G~Y~C~a~N~~G~   86 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNGKD-VNGNPEDRITRHNRT--SGKRLLFKTTLPEDEGVYTCEVDNGVGK   86 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETTEE-CCCCTTSSEESCSSS--TTSEEEESSCCGGGCEEEEEEECCSSSS
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEeeee-ccccceeeeeeeeec--CCCEEEEEeccccccEEEEEEEEECCCc
Confidence            4567889999999999999999999999997544 333333322211111  1238999999999999999999999998


Q ss_pred             ce-eEEEEEE
Q psy15734        262 TD-GFIKVYV  270 (314)
Q Consensus       262 ~~-~~~~l~V  270 (314)
                      .. .++.|.|
T Consensus        87 ~~s~s~~L~V   96 (97)
T d1biha3          87 PQKHSLKLTV   96 (97)
T ss_dssp             CEEEEEEEEE
T ss_pred             EEEEEEEEEE
Confidence            64 5778876

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=8.4e-17  Score=106.14  Aligned_cols=89  Identities=19%  Similarity=0.173  Sum_probs=71.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe-EEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG-SYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G-~Y~C  253 (314)
                      .|.|...+.+..+.+|+++.|.|.+.|.|.|.+.|++++..........  .  .   .....|.|.++..+|.| .|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~~~~~--~--~---~~~~~L~i~~~~~~d~G~~Y~C   74 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSATVMKS--G--G---LPSLGLTLANVTSDLNRKNVTC   74 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEEECCC--C--C---SSEEEEEEESCCSTTTTCCEEE
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeeeeeee--e--e---ccceeEEEccccccccceEEEE
Confidence            4778888888899999999999999999999999999865433221111  0  1   11348999999999999 6999


Q ss_pred             EEeeCCCCceeEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|..|....++.|.|
T Consensus        75 ~a~N~~G~~~~s~~l~V   91 (92)
T d2ifga1          75 WAENDVGRAEVSVQVNV   91 (92)
T ss_dssp             CCEETTEECCEEECCCC
T ss_pred             EEEcCCCEEEEEEEEEE
Confidence            99999999999888765

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=99.63  E-value=1e-15  Score=102.93  Aligned_cols=94  Identities=20%  Similarity=0.349  Sum_probs=75.1

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.|...+..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..        +..+.++.+.........|.|.+++.+|
T Consensus         6 ~~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~~-~~--------i~~~~~~~~~~~~~~~~~L~I~~~~~~D   76 (102)
T d1fhga_           6 HVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEVMWFKDD-NP--------VKESRHFQIDYDEEGNCSLTISEVCGDD   76 (102)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EE--------CCCSSSEEEEECTTCEEEEEESSCCGGG
T ss_pred             CCCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeEEEEeee-cc--------ccceeeEeEEEecCceeeeEecCCCHHh
Confidence            34688998999999999999999999999999999999955 33        3345566666555556689999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEE
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      +|.|+|.+.|. |.....+.|.|.
T Consensus        77 ~G~Y~C~a~N~~G~~~~~~~L~V~  100 (102)
T d1fhga_          77 DAKYTCKAVNSLGEATCTAELLVE  100 (102)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCcEEEEEEEEEEE
Confidence            99999999876 445556666664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.63  E-value=5.3e-16  Score=104.93  Aligned_cols=87  Identities=14%  Similarity=0.068  Sum_probs=70.0

Q ss_pred             cCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEE
Q psy15734        189 VSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKV  268 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l  268 (314)
                      .+....|.|.+.|+|.|.+.|+++ +..+............+.....+.|.|.+++.+|+|.|+|.|.|..|.++.++.|
T Consensus        16 ~~~~~~i~~~v~G~P~P~v~W~~n-~~~i~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~a~N~~G~~~~~~~v   94 (105)
T d1wwca_          16 LRLEHCIEFVVRGNPPPTLHWLHN-GQPLRESKIIHVEYYQEGEISEGCLLFNKPTHYNNGNYTLIAKNPLGTANQTING   94 (105)
T ss_dssp             CCCEEEEEEEEECSSCCEEEEEET-TEECCCSSSEEEEEEECSSEEEEEEEEESCCGGGCEEEEEEEEETTEEEEEEEEE
T ss_pred             EEEEEEEEEEEEEeCCCeEEEEeC-ccccCCCcceeeeEEeecccceEEEEEeecccccceEEEEEEEcCCCEEEEEEEE
Confidence            344566888999999999999997 4555555555554445555556789999999999999999999999999999999


Q ss_pred             EEEecCCC
Q psy15734        269 YVNLVDGD  276 (314)
Q Consensus       269 ~V~~~~~~  276 (314)
                      .|..+|++
T Consensus        95 ~V~~~P~P  102 (105)
T d1wwca_          95 HFLKEPFP  102 (105)
T ss_dssp             CCSCCCCC
T ss_pred             EEEeCCCC
Confidence            98877755

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.62  E-value=3.3e-16  Score=103.79  Aligned_cols=89  Identities=17%  Similarity=0.156  Sum_probs=68.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCc-eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPAS-LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p-~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .|.|...+.+..+.+|+.+.|.|.+.|.|.| .+.|++++.. +............++     +|.|.++..+|+|.|+|
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~~-l~~~~~~~~~~~~~~-----~L~i~~v~~~D~G~Y~C   75 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGKS-YNWQEHNAALRKDEG-----SLVFLRPQASDEGHYQC   75 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSSB-CCTTTTTEEECTTSC-----CEEESSCCGGGCEEEEE
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeeee-eeeecceeeecccce-----EEEEeccChhcCeEEEE
Confidence            4788888889999999999999999999976 6899997544 333332222223333     89999999999999999


Q ss_pred             EEeeCCCCc-eeEEEEE
Q psy15734        254 VAVNALGET-DGFIKVY  269 (314)
Q Consensus       254 ~a~n~~g~~-~~~~~l~  269 (314)
                      .|.|..|.. ++.+.|+
T Consensus        76 ~a~N~~G~~~s~~v~l~   92 (94)
T d1biha1          76 FAETPAGVASSRVISFR   92 (94)
T ss_dssp             EEEETTEEEECCCEEEE
T ss_pred             EEEeCCCEEEEEEEEEE
Confidence            999999975 3444443

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.62  E-value=9.1e-16  Score=100.21  Aligned_cols=87  Identities=18%  Similarity=0.353  Sum_probs=69.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|.|+..+.+..+.+|+++.|.|.+.|.|.+.+.|++++ ..+        ..+.++.+...     .|.|.+++.+|+|
T Consensus         1 kP~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v~W~k~g-~~i--------~~~~~~~~~~~-----~L~i~~v~~~D~G   66 (89)
T d1cs6a4           1 QPDWLDVITDTEADIGSDLRWSCVASGKPRPAVRWLRDG-QPL--------ASQNRIEVSGG-----ELRFSKLVLEDSG   66 (89)
T ss_dssp             EEEEEECCCCEEEETTCCEEEECEEEEESCCEEEEEETT-EEC--------CCCSSEEEETT-----EEEESSCCGGGCE
T ss_pred             CCCeEEECCCEEECCCCcEEEEEEEEEEcCCEEEEEEee-ccc--------cccceeeeeee-----eEEEEeecccCCE
Confidence            378999999999999999999999999999999999954 332        23445555322     7999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .|+|.+.|. |.....+.|.|.
T Consensus        67 ~Y~C~a~N~~G~~~~~~~l~V~   88 (89)
T d1cs6a4          67 MYQCVAENKHGTVYASAELTVQ   88 (89)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEeCCCEEEEEEEEEEE
Confidence            999999876 444555666664

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.61  E-value=6.8e-16  Score=102.80  Aligned_cols=92  Identities=21%  Similarity=0.282  Sum_probs=71.2

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|+|+.++..+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.++.+...+ ....|.|.+++.+|+|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~-~~l--------~~~~~~~~~~~~-~~~~L~I~~~~~~D~G   70 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVVTWHKDD-REL--------KQSVKYMKRYNG-NDYGLTINRVKGDDKG   70 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEEEEEETT-EEC--------CSBTTBBCCCST-TEEEEEESCCCSGGGS
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEEEEEEee-ecc--------ceeeEEEEEecC-CeeEEEeCCCceecCE
Confidence            489999999999999999999999999999999999954 332        233344443333 2347999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEEEe
Q psy15734        101 WYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      .|+|.+.|. |..+..+.|.|..
T Consensus        71 ~Y~C~a~N~~G~~~~~~~l~V~~   93 (97)
T d1koaa1          71 EYTVRAKNSYGTKEEIVFLNVTR   93 (97)
T ss_dssp             CEEEEEEETTEEEEEEECCEEEC
T ss_pred             EEEEEEEECCCEEEEEEEEEEee
Confidence            999999875 4455566677654

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.61  E-value=1.9e-15  Score=100.79  Aligned_cols=94  Identities=21%  Similarity=0.276  Sum_probs=71.4

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.|+.++....+.+|+++.|.|.+.+.|.+.+.|++++ ..+        ..+.+............|.|.+++.+|+
T Consensus         3 eaP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v~W~k~~-~~i--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~   73 (98)
T d1g1ca_           3 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPECEWYKNG-VKI--------ERSDRIYWYWPEDNVCELVIRDVTGEDS   73 (98)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEEEEEETT-EEC--------CCCSSEEEEEEETTEEEEEECSCCGGGC
T ss_pred             cCCeEecCCCcEEEcCCCcEEEEEEEEEecCCeEEEEeCc-eEE--------eeeeeeEEEeccceEEEEEeccCccccC
Confidence            3589999999999999999999999999999999999954 332        2233433332222334799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEe
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      |.|+|.+.|. |..+..+.|.|..
T Consensus        74 G~Y~c~a~N~~G~~~~~~~L~V~~   97 (98)
T d1g1ca_          74 ASIMVKAINIAGETSSHAFLLVQA   97 (98)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             EEEEEEEEECCcEEEEEEEEEEEE
Confidence            9999999876 4445566777653

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.61  E-value=7.1e-17  Score=103.79  Aligned_cols=73  Identities=14%  Similarity=-0.002  Sum_probs=60.9

Q ss_pred             CCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      +....+.+|+++.|.|.+.|.|.|.+.|++++.. +..                 .+.+.+++.+|+|.|+|.|.|..|.
T Consensus        11 p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~-~~~-----------------~~~~~~v~~~d~G~Y~C~A~N~~G~   72 (84)
T d2oz4a3          11 PGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF-PLP-----------------IGESVTVTRDLEGTYLCRARSTQGE   72 (84)
T ss_dssp             CSEEEEETTCEECCCCCCEEESCCEEEEEETTTE-ECC-----------------TTSCEECCGGGCEEEEEEEEETTEE
T ss_pred             CccEEEeCCCEEEEEEEEeEcCccEEEEEEeecc-cee-----------------eeeeeccccCCCCEEEEEEEcCCCE
Confidence            4667888999999999999999999999997543 322                 2235578899999999999999999


Q ss_pred             ceeEEEEEEEe
Q psy15734        262 TDGFIKVYVNL  272 (314)
Q Consensus       262 ~~~~~~l~V~~  272 (314)
                      .++.+.|.|..
T Consensus        73 ~~~~~~l~V~~   83 (84)
T d2oz4a3          73 VTREVTVNVLS   83 (84)
T ss_dssp             EEEEEEEEEEC
T ss_pred             EEEEEEEEEEC
Confidence            99999988864

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=1.4e-15  Score=101.03  Aligned_cols=92  Identities=11%  Similarity=0.052  Sum_probs=63.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEE-ecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYW-TNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W-~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .|.|. ..++..+.+|+++.|.|.+.|.|.|.+.| ++.+........... .....  ...++|.|.++..+|+|.|+|
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~L~I~~v~~~D~G~Y~C   77 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDAPLKEIK-VTSSR--RFIASFNVVNTTKRDAGKYRC   77 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCCCEEEEE-EEETT--EEEEEEEECSCCGGGCSEEEE
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeeecCCcee-EEEee--cCceEEEECCCCHHHCeEEEE
Confidence            46675 57888999999999999999999886553 322222222111111 11111  123489999999999999999


Q ss_pred             EEeeCCCCceeE-EEEEE
Q psy15734        254 VAVNALGETDGF-IKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~-~~l~V  270 (314)
                      .|.|..|....+ ..|.|
T Consensus        78 ~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          78 MIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             EEEETTEEEEEEEEEEEE
T ss_pred             EEEeCCCeEEEEEEEEEE
Confidence            999999986544 67776

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.60  E-value=4.6e-16  Score=109.86  Aligned_cols=124  Identities=21%  Similarity=0.267  Sum_probs=79.3

Q ss_pred             eCCceee---ecCcceeEEecCceEEEEEEecccCCCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEE
Q psy15734        122 VPPRILL---DRTSTDVVVREGTEVTLECSAVGYPEPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCH  198 (314)
Q Consensus       122 ~~p~~~~---~~~~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~  198 (314)
                      +||.+..   ...+..+.+.+|+.++|.|.+.|.|.|.+.|++ ++..+.......                    ..+.
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~-~~~~~~~~~~~~--------------------~~~~   61 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQK-AITQGNKAPARP--------------------APDA   61 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEE-ECCCSCSSCCCC--------------------CCCC
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEee-CCeEccCCccce--------------------eeec
Confidence            4666532   123567889999999999999999999999999 444332111110                    0001


Q ss_pred             EeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        199 TEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       199 ~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      .. .......|...+........++.+....+    .+.|.|.++..+|+|.|+|.|.|..|.+.+.+.|.|.
T Consensus        62 ~~-~~~~~~~~~~~~~~~~~~~~r~~~~~~~~----~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          62 PE-DTGDSDEWVFDKKLLCETEGRVRVETTKD----RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             CC-CCCCSSCCCCSCCCCCSCSSSCEEEEETT----EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             cc-ccccceeeecCCceeeccCceEEEEECCC----EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            11 11122222222233333344444432222    3589999999999999999999999999999988874

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=99.60  E-value=1.6e-15  Score=100.10  Aligned_cols=90  Identities=8%  Similarity=0.077  Sum_probs=70.2

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.|+.+++.+.+.+|+++.|.|.+.|.|.+.+.|++++..         +..+.++.+...+. ...|.|.+++.+|+|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v~W~~~~~~---------i~~~~~~~~~~~~~-~~~L~I~~~~~~D~G   71 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTATWTVGDSG---------AALAPELLVDAKSS-TTSIFFPSAKRADSG   71 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEEEEECSSSS---------CBCSTTSEEEEETT-EEEEECTTBCGGGCE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeEEEEeeeee---------ceeeeeeeeccccc-ceeeccccccccccE
Confidence            68999999999999999999999999999999999996543         22344554444332 347999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEE
Q psy15734        101 WYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .|+|.+.|. |..+..+.|.|
T Consensus        72 ~Y~c~a~N~~G~~~~~~~l~V   92 (93)
T d1wiua_          72 NYKLKVKNELGEDEAIFEVIV   92 (93)
T ss_dssp             EEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEECCCEEEEEEEEEE
Confidence            999999876 44455555554

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.60  E-value=5.1e-16  Score=103.43  Aligned_cols=89  Identities=20%  Similarity=0.260  Sum_probs=67.1

Q ss_pred             CCeEEcCCCcceeecC---ccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVS---QTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g---~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +|.|...+.+..+.+|   +++.|.|.+.|.|.|.+.|++++ ..+............+     ..|.|..+..+|+|.|
T Consensus         4 ~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng-~~i~~~~~~~~~~~~~-----~~l~i~~~~~~d~G~Y   77 (97)
T d1cs6a1           4 GPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNG-TELKMGPDSRYRLVAG-----DLVISNPVKAKDAGSY   77 (97)
T ss_dssp             EEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETT-EECCCSTTSSEEEETT-----EEEEESCCHHHHCEEE
T ss_pred             CCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEee-eeccCCCCceEEeeee-----eEEEEecccccCCEEE
Confidence            4777777777777665   78999999999999999999974 4443433333333333     2788888999999999


Q ss_pred             EEEEeeCCCCc-eeEEEEE
Q psy15734        252 RCVAVNALGET-DGFIKVY  269 (314)
Q Consensus       252 ~C~a~n~~g~~-~~~~~l~  269 (314)
                      +|.|.|..|.. ++.+.|+
T Consensus        78 ~C~a~N~~G~~~S~~a~L~   96 (97)
T d1cs6a1          78 QCVATNARGTVVSREASLR   96 (97)
T ss_dssp             EEEEEETTEEEECCCEEEE
T ss_pred             EEEEEECCCEEEEEEEEEe
Confidence            99999999976 4455553

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.58  E-value=2.7e-15  Score=100.90  Aligned_cols=97  Identities=11%  Similarity=0.173  Sum_probs=70.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecC---CceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITG---DDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~---~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      |.+..++....+.+|+++.|.|.+.|.|.|.+.|++.++......   ...............++|.|.++..+|+|.|+
T Consensus         2 ~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~tL~I~~v~~~D~G~Y~   81 (102)
T d1f97a1           2 GSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSSSGITFSSVTRKDNGEYT   81 (102)
T ss_dssp             CEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEETTEEEESCCCGGGCEEEE
T ss_pred             CCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecCCEEEEeECCccCCEEEE
Confidence            456677788899999999999999999999999998655432211   10000000000111238999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEEEe
Q psy15734        253 CVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V~~  272 (314)
                      |.|.|..|.....+.|.|.+
T Consensus        82 C~a~n~~g~~~~~~~v~v~V  101 (102)
T d1f97a1          82 CMVSEEGGQNYGEVSIHLTV  101 (102)
T ss_dssp             EEEEETTSSSEEEEEEEEEE
T ss_pred             EEEEECCCCEEEEEEEEEEE
Confidence            99999999998887777654

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.57  E-value=2.7e-15  Score=101.55  Aligned_cols=91  Identities=16%  Similarity=0.258  Sum_probs=68.8

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCce-e-------eeEeeCCeeeEEEEEEeecCCCC
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDY-E-------DSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~-~-------~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      +.+...+....+.+|+++.|.|.+.|.|.|.+.|+++++......... .       .....+     ++|.|.+++.+|
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~I~~v~~~D   79 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTRED   79 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCTTS
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC-----ceEEEecccccc
Confidence            345566777889999999999999999999999999765433221100 0       011122     389999999999


Q ss_pred             CeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        248 FGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      +|.|+|.|.|..|.....+.|+|.
T Consensus        80 ~G~Y~C~a~n~~G~~~~~~~v~v~  103 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNSYGEVKVKLI  103 (105)
T ss_dssp             CSEEEEEEEETTSSCEECCEEECC
T ss_pred             eeeEEEEEEECCCCEEEEEEEEEE
Confidence            999999999999999877766654

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.56  E-value=8.2e-15  Score=99.43  Aligned_cols=93  Identities=18%  Similarity=0.331  Sum_probs=68.1

Q ss_pred             CeEEcCC-CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeee--------EeeCCeeeEEEEEEeecCCC
Q psy15734        176 PMLTIPN-QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDS--------RLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       176 p~~~~~~-~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~--------~~~~~~~~~s~L~i~~~~~~  246 (314)
                      |.|..+. ....+.+|+++.|.|.+.|.|.|.+.|++++ ..+.........        .........+.|.|.+++.+
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g-~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~v~~~   80 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG-SVIDEDDPVLGEDYYSVENPANKRRSTLITVLNISEIESR   80 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETT-EECCTTCSSEEEEEEEECCSSCGGGEEEEEEEEESSCCGG
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECC-cccccccceeeeeeeeeccceeeecccceEEEEEeecchH
Confidence            5555444 4466889999999999999999999999964 333322221110        11112334679999999999


Q ss_pred             CCe-EEEEEEeeCCCCceeEEEEE
Q psy15734        247 QFG-SYRCVAVNALGETDGFIKVY  269 (314)
Q Consensus       247 d~G-~Y~C~a~n~~g~~~~~~~l~  269 (314)
                      |.| .|+|.|.|..|.+++.+.|.
T Consensus        81 D~g~~Y~C~A~N~~G~~~~~i~L~  104 (107)
T d1iray3          81 FYKHPFTCFAKNTHGIDAAYIQLI  104 (107)
T ss_dssp             GGSSCEEEEEECSSCEEEEEEEEE
T ss_pred             HCCcEEEEEEEeCCCeEEEEEEEE
Confidence            999 59999999999998888875

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=99.55  E-value=2.9e-15  Score=98.40  Aligned_cols=89  Identities=17%  Similarity=0.233  Sum_probs=68.0

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      +|+..|..+.+.+|+++.|.|.+.+.|.+.+.|++++..         +..+.++.+..... ...|.|.+++.+|+|.|
T Consensus         1 rii~~P~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~g~~---------l~~~~~~~~~~~~~-~~~L~i~~v~~~D~G~Y   70 (91)
T d1tnna_           1 RILTKPRSMTVYEGESARFSCDTDGEPVPTVTWLRKGQV---------LSTSARHQVTTTKY-KSTFEISSVQASDEGNY   70 (91)
T ss_dssp             CCSBCCCCEECSSSSCCCEEEECCCSSCCCCEEESSSST---------TCSSSSCEEEECSS-EEEEECSSCCSCCCEEE
T ss_pred             CEEeCCcCEEEeCCCcEEEEEEEEEEeCCeEEEEEeecc---------cccccceeeeeecc-eeEEeecCCCHHHCEEE
Confidence            366778899999999999999999999999999995532         22344555544433 34899999999999999


Q ss_pred             EEEEecC-CCcceeEEEEEE
Q psy15734        103 MCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       103 ~C~~~~~-~~~~~~~~l~v~  121 (314)
                      +|.+.|. |.....+.|.|.
T Consensus        71 ~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1tnna_          71 SVVVENSEGKQEAEFTLTIQ   90 (91)
T ss_dssp             EEECBCSSCBCCEEEEEECC
T ss_pred             EEEEEECCCEEEEEEEEEEE
Confidence            9999775 455556666653

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.55  E-value=6.5e-15  Score=99.62  Aligned_cols=90  Identities=14%  Similarity=0.103  Sum_probs=66.5

Q ss_pred             cceeecCccEE---EEEEEeecCCceeEEecCCCeeeecCCceeeeEeeC---CeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        184 LEGAFVSQTVE---LHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLIN---GYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       184 ~~~v~~g~~~~---l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~---~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...+..|....   +.|.+.|.|.|.+.|+++ +..+.............   .....+.|.|.++..+|+|.|+|.|.|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~n-g~~l~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G~Y~C~A~N   84 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFN-GSVLNETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNGNYTLLAAN   84 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEET-TEECCCCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCEEEEEEEEE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEe-eeEccCccceeeeeeeeeeeeeccceEEEECcccHHHCcEEEEEEEe
Confidence            34455555555   555899999999999997 44444444443332222   223456899999999999999999999


Q ss_pred             CCCCceeEEEEEEEecC
Q psy15734        258 ALGETDGFIKVYVNLVD  274 (314)
Q Consensus       258 ~~g~~~~~~~l~V~~~~  274 (314)
                      ..|.+.+++.|.|..+|
T Consensus        85 ~~G~~~~~i~v~v~~~P  101 (107)
T d1he7a_          85 PFGQASASIMAAFMDNP  101 (107)
T ss_dssp             TTEEEEEEEEECCCSCT
T ss_pred             CCCEEEEEEEEEEEcCC
Confidence            99999999999887776

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.55  E-value=9.3e-15  Score=94.13  Aligned_cols=75  Identities=15%  Similarity=0.177  Sum_probs=58.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+.+.|....+.+|++++|.|.+.|.|.+.+.|++.++..+....         .     +|.|.++..+|+|.|+|.
T Consensus         5 kpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~~~~---------~-----~l~i~~~~~~d~G~Y~C~   70 (84)
T d1fnla1           5 KAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLISSQA---------S-----SYFIDAATVNDSGEYRCQ   70 (84)
T ss_dssp             CCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEESSC---------S-----EEEESSCCGGGCEEEEEE
T ss_pred             CCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeeeecc---------e-----eeEecCCcccCCEEEEEE
Confidence            46777778788899999999999999999987664443455443322         1     899999999999999999


Q ss_pred             EeeCCCCce
Q psy15734        255 AVNALGETD  263 (314)
Q Consensus       255 a~n~~g~~~  263 (314)
                      |.|...++.
T Consensus        71 a~~s~~S~~   79 (84)
T d1fnla1          71 TNLSTLSDP   79 (84)
T ss_dssp             CSSSCCCCC
T ss_pred             ccCCCcccc
Confidence            988665443

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.55  E-value=2.2e-15  Score=101.72  Aligned_cols=83  Identities=17%  Similarity=0.191  Sum_probs=64.0

Q ss_pred             cCCCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        180 IPNQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+.....+.+|+++.|.|.+ .|.|.|.+.|++++................++     .|.|.++..+|+|.|+|.|.|.
T Consensus         9 ~~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~~~~~~~~~~~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~   83 (105)
T d1cs6a2           9 EERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNFIPADGRRFVSQTTG-----NLYIAKTEASDLGNYSCFATSH   83 (105)
T ss_dssp             SCCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCBCCCCSSEEECTTTC-----CEEESSCCGGGCEEEEEEEEEE
T ss_pred             CCCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeeccccccccceeeeecCCC-----EEeecccccccCcEEEEEEEEC
Confidence            34566789999999999997 79999999999976554433322222223344     8999999999999999999999


Q ss_pred             CCCceeEEE
Q psy15734        259 LGETDGFIK  267 (314)
Q Consensus       259 ~g~~~~~~~  267 (314)
                      .|....++.
T Consensus        84 ~g~~~~~v~   92 (105)
T d1cs6a2          84 IDFITKSVF   92 (105)
T ss_dssp             ETTEEEEEE
T ss_pred             CCCEEEEEE
Confidence            998776643

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.54  E-value=3e-15  Score=102.20  Aligned_cols=88  Identities=17%  Similarity=0.251  Sum_probs=60.4

Q ss_pred             ceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCCceeeeEeeCC----eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        185 EGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGDDYEDSRLING----YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~----~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..+.+|+++.|.|.+. |.|.+.+.|++++..+... .........+.    ....+.|.|.+++.+|+|.|+|.|.|..
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~Y~C~a~N~~   90 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDGISMLTA-DAKKTRAFMNSSFTIDPKSGDLIFDPVTAFDSGEYYCQAQNGY   90 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETTEESBC------CBSCSSSCEEECTTTCCEEESSCCGGGCEEEEEEEECSS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCCeEecCC-CceeEEeecCceEEEeecccceEECCCCccCCEEEEEEEEECC
Confidence            3688999999999985 8999999999975433222 21111100000    0112389999999999999999999999


Q ss_pred             CCcee--EEEEEEEec
Q psy15734        260 GETDG--FIKVYVNLV  273 (314)
Q Consensus       260 g~~~~--~~~l~V~~~  273 (314)
                      |...+  .+.|.|...
T Consensus        91 G~~~~s~~v~l~V~~l  106 (110)
T d1f97a2          91 GTAMRSEAAHMDAVEL  106 (110)
T ss_dssp             SCCEECCCEEEEEESS
T ss_pred             CcEEEEEEEEEEEEec
Confidence            98755  556666544

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.54  E-value=4.3e-16  Score=105.38  Aligned_cols=96  Identities=20%  Similarity=0.218  Sum_probs=66.6

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCCceeeeEeeCC---eeeEEEEEEeecCCCCCeE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGDDYEDSRLING---YSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~---~~~~s~L~i~~~~~~d~G~  250 (314)
                      ||.+........+.+|+++.|.|.+ .|.|.|.+.|++++..+. ....+........   ....+.|.|.++..+|+|.
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~i~-~~~~~~~~~~~~~~~~~~~~~~l~I~~v~~~D~G~   80 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIVMP-TNPKSTRAFSNSSYVLNPTTGELVFDPLSASDTGE   80 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCCCC-SCSSSSSSCTTCCCCCCTTTCCEEESSCCGGGCCC
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEEcc-CCCceeEEeeCCcEEEeecccceEECCCCcccCcE
Confidence            4444444445578899999999998 589999999999754433 3222221111111   1123489999999999999


Q ss_pred             EEEEEeeCCCCceeEEEEEEE
Q psy15734        251 YRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       251 Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      |+|.|.|..|...++..|+|.
T Consensus        81 Y~C~a~N~~G~~~~s~~v~v~  101 (104)
T d1nbqa2          81 YSCEARNGYGTPMTSNAVRME  101 (104)
T ss_dssp             EEEEEECSSSCCEECCCBCCE
T ss_pred             EEEEEEECCCceEEEEEEEEE
Confidence            999999999998776555544

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.53  E-value=2.3e-14  Score=93.73  Aligned_cols=87  Identities=20%  Similarity=0.258  Sum_probs=63.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      |..+..+..+.+|+++.|.|.+. .|.|.+.|++++ ..+..+.........++  ..++|.|.++..+|+|.|+|.|.|
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~-~~~~~~~~~~~~~~~~~--~~~~L~I~~v~~~D~G~Y~C~a~n   78 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNG-EEIIPGPKSRYRIRVEG--KKHILIIEGATKADAAEYSVMTTG   78 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETT-EECCCSTTCSEEEEEET--TEEEEEEEEECTTTCSEEEEEETT
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEee-cccCCCCCccEEEEEeC--CccEEEECccccccCEEEEEEEec
Confidence            44567888999999999999994 688999999974 44443433322222222  135899999999999999999976


Q ss_pred             CCCCceeEEEEEEEe
Q psy15734        258 ALGETDGFIKVYVNL  272 (314)
Q Consensus       258 ~~g~~~~~~~l~V~~  272 (314)
                      .    ..+..|.|+.
T Consensus        79 ~----~~~a~l~V~~   89 (90)
T d1x44a1          79 G----QSSAKLSVDL   89 (90)
T ss_dssp             E----EEEEEEEEEC
T ss_pred             c----eEEEEEEEEE
Confidence            3    4566676653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.53  E-value=9.4e-15  Score=96.94  Aligned_cols=89  Identities=19%  Similarity=0.256  Sum_probs=67.4

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+..  .+..+.+|+++.|.|.+.+ |++.+.|+++ +..+....+..+. ...+     +|.|.++..+|+|.|+|.|
T Consensus         6 P~i~~--~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~-~~~l~~~~~~~~~-~~~~-----~L~I~~v~~~d~G~Y~C~a   75 (96)
T d1l6za2           6 PFLQV--TNTTVKELDSVTLTCLSND-IGANIQWLFN-SQSLQLTERMTLS-QNNS-----ILRIDPIKREDAGEYQCEI   75 (96)
T ss_dssp             CCEEC--SCSEECTTSCEEEEECCCC-SSCEEEEEET-TEECCCCTTEEEE-TTTT-----EEEECSCCGGGCEEEEEEE
T ss_pred             CeEEc--CceEEeCCCeEEEEEccCC-CCCCEEEEEe-eeecccccceecc-CCce-----EEEEeccchhhceEEEEEE
Confidence            44443  4456899999999999877 5688999997 4545444544432 2333     8999999999999999999


Q ss_pred             eeCCCCce-eEEEEEEEecC
Q psy15734        256 VNALGETD-GFIKVYVNLVD  274 (314)
Q Consensus       256 ~n~~g~~~-~~~~l~V~~~~  274 (314)
                      .|..|... ..+.|.|...|
T Consensus        76 ~N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          76 SNPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             ESSSCCEECCCCEEEECCSC
T ss_pred             EeCCCCeEEEeEEEEEEcCC
Confidence            99999774 56888887664

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=99.52  E-value=6.4e-14  Score=95.33  Aligned_cols=101  Identities=20%  Similarity=0.291  Sum_probs=68.0

Q ss_pred             CCCceecC-CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEE---eeeeeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         20 DMPRFAEP-VANVTATVGKEALMACVVENLREYKVAWVKMITQTILS---IHHKVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        20 ~~p~~~~~-~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      .+|.|... |..+++.+|+++.|.|.+.+.|.+.+.|++++......   .....................+.|.|.+++
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   82 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHIQWIKHVEKNGSKYGPDGLPYLKVLKAAGVNTTDKEIEVLYIRNVT   82 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEEEEEEEC-------------CEEEECCEEEEETTEEEEEEEECSCC
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeEEEEecCccCCceeccCCceeEeecccceeEEecCCcEEEEECCCC
Confidence            46888765 78899999999999999999999999999864321110   000001111112222233344589999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEE
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      .+|+|.|+|.+.|. |.....+.|.|
T Consensus        83 ~~D~G~Y~C~a~N~~G~~~~~~~L~V  108 (109)
T d2fdbp2          83 FEDAGEYTCLAGNSIGISFHSAWLTV  108 (109)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEEEE
T ss_pred             HHHCeEEEEEEEECCCEEEEEEEEEE
Confidence            99999999999875 55566667765

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.52  E-value=8.8e-14  Score=92.32  Aligned_cols=91  Identities=18%  Similarity=0.322  Sum_probs=66.4

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      +...|....+.+|+++.|.|.+.+.|. +.+.|++.++..+.       ....++.+........+|.|.+++.+|+|.|
T Consensus         3 V~i~P~~~~v~~G~~~~l~C~v~g~p~~~~v~W~~~~g~~~~-------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y   75 (97)
T d1epfa1           3 VDIVPSQGEISVGESKFFLCQVAGDAKDKDISWFSPNGEKLS-------PNQQRISVVWNDDDSSTLTIYNANIDDAGIY   75 (97)
T ss_dssp             EEEESSSEEEETTCCEEEEEEECCCSCCCEEEEECTTSCEEC-------CBSSSEEEEEEETTEEEEEECSCCGGGCEEE
T ss_pred             EEEECCCEEEccCCcEEEEEEEEeccCCCEEEEEEeeeeeee-------eccccEEEEeecCcceEEEcccCchhhceEE
Confidence            344567789999999999999998764 79999996655432       2344555544433445899999999999999


Q ss_pred             EEEEecCCCc--ceeEEEEEE
Q psy15734        103 MCQINTVPMT--SQKGYLQVV  121 (314)
Q Consensus       103 ~C~~~~~~~~--~~~~~l~v~  121 (314)
                      +|.+.|..+.  ...+.|.|+
T Consensus        76 ~C~a~N~~G~~~~~tv~l~V~   96 (97)
T d1epfa1          76 KCVVTAEDGTQSEATVNVKIF   96 (97)
T ss_dssp             EEEEEETTTEEEEEEEEEEEE
T ss_pred             EEEEEeCCCcEEEEEEEEEEE
Confidence            9999876433  334566654

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=96.12  Aligned_cols=87  Identities=10%  Similarity=0.011  Sum_probs=68.5

Q ss_pred             CCcceeecCccEEEEEEEe-ecCCceeEEecCCCeeeecCC-ceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        182 NQLEGAFVSQTVELHCHTE-AFPASLNYWTNEKGDMIITGD-DYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~-g~p~p~~~W~~~~~~~~~~~~-~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +....+.+|+.+.|.|.+. +.|.+.+.|++++........ ..++ ...++     +|.|.+++.+|+|.|+|.|.|..
T Consensus         9 ~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~~~~~~~~-~~~~~-----~L~I~~v~~~D~G~Y~C~a~N~~   82 (101)
T d1iray1           9 KIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVSTEQASRI-HQHKE-----KLWFVPAKVEDSGHYYCVVRNSS   82 (101)
T ss_dssp             CCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCCCCTTSSE-EEETT-----EEEETTCCGGGCEEEEEEEEETT
T ss_pred             CcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccccccceEE-eccCC-----EEEeccceecCCEEEEEEEECCC
Confidence            4445678899999999885 789999999998654443322 2222 23344     99999999999999999999999


Q ss_pred             CCceeEEEEEEEecC
Q psy15734        260 GETDGFIKVYVNLVD  274 (314)
Q Consensus       260 g~~~~~~~l~V~~~~  274 (314)
                      |....++.|.|....
T Consensus        83 g~~~~~~~L~V~~~~   97 (101)
T d1iray1          83 YCLRIKISAKFVENE   97 (101)
T ss_dssp             EEEEEEEEEEEECCC
T ss_pred             CeEEEEEEEEEEeCC
Confidence            999999999997653

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.52  E-value=1.8e-14  Score=93.61  Aligned_cols=77  Identities=13%  Similarity=0.110  Sum_probs=58.5

Q ss_pred             cceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        184 LEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ...+.+|++++|.|.+.+ .|.+.+.|++++.......        .+.     .|.|.++..+|+|.|+|.|.|..|..
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g~~~~~~~--------~~~-----~l~i~~v~~~dsG~Y~C~a~n~~g~~   75 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNGKSKKFSR--------SDP-----NFSIPQANHSHSGDYHCTGNIGYTLY   75 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETTEEEEEES--------SCC-----EEEETTCCGGGCEEEEEEEEETTEEE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeecccccccc--------ccc-----ccccCccCHHHCCeEEEEEEeCCCCE
Confidence            345889999999999975 4667899999743322111        122     89999999999999999999998865


Q ss_pred             -eeEEEEEEEec
Q psy15734        263 -DGFIKVYVNLV  273 (314)
Q Consensus       263 -~~~~~l~V~~~  273 (314)
                       +..+.|.|+.+
T Consensus        76 ~S~~v~l~V~~P   87 (88)
T d2fcba2          76 SSKPVTITVQAP   87 (88)
T ss_dssp             ECCCEEEEECCC
T ss_pred             EeeeEEEEEeCC
Confidence             45677777653

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.52  E-value=2.5e-14  Score=94.32  Aligned_cols=80  Identities=15%  Similarity=0.209  Sum_probs=59.2

Q ss_pred             CcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ....+.+|+++.|.|.+. .|+|.+.|++++..+......+.+.. .++   .+.|.|.++..+|+|.|+|.|.|.    
T Consensus        14 ~~~~v~~G~~v~l~c~v~-~p~~~v~W~k~g~~i~~~~~~~~~~~-~~~---~~~L~I~~~~~~D~G~Y~c~a~n~----   84 (94)
T d1pd6a_          14 PAYQVSKGHKIRLTVELA-DHDAEVKWLKNGQEIQMSGSKYIFES-IGA---KRTLTISQCSLADDAAYQCVVGGE----   84 (94)
T ss_dssp             SEEEEETTSCEEEEEECS-SSSSCCEEEESSSEECCCSSSSEEEE-ETT---EEEEEECSCSSSSCEEEEEEETTE----
T ss_pred             CCEEECcCCeEEEEEEEC-CCCceEEEEEcCccceeeeeeEeeec-cCC---eEEeecCCCCceecEEEEEEEeeE----
Confidence            445789999999999995 58999999998555544444454443 332   348999999999999999999664    


Q ss_pred             eeEEEEEEE
Q psy15734        263 DGFIKVYVN  271 (314)
Q Consensus       263 ~~~~~l~V~  271 (314)
                      ..+..|.|.
T Consensus        85 ~~s~~l~V~   93 (94)
T d1pd6a_          85 KCSTELFVK   93 (94)
T ss_dssp             EECCEEEEE
T ss_pred             EEEEEEEEE
Confidence            444556554

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.51  E-value=9.3e-15  Score=95.81  Aligned_cols=85  Identities=18%  Similarity=0.253  Sum_probs=63.8

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      +|.+..++....+.+|+++.|.|.+.+.|+ +.+.|++++..+ ....+  .....++     +|.|.+++.+|+|.|+|
T Consensus         6 ~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~l-~~~~~--~~~~~~~-----~L~I~~v~~~D~G~Y~C   77 (93)
T d1n26a1           6 CPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPAA-GSHPS--RWAGMGR-----RLLLRSVQLHDSGNYSC   77 (93)
T ss_dssp             CCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSSS-SCCCE--EEEEESS-----EEEECSCCGGGCEEEEE
T ss_pred             CCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEccccc-cceee--EEecCCC-----EEEECCCChhcCEEEEE
Confidence            467777888889999999999999999775 589999975443 22222  2233444     89999999999999999


Q ss_pred             EEeeCCCCceeEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|..+   .++.|.|
T Consensus        78 ~a~n~~~---~t~~l~V   91 (93)
T d1n26a1          78 YRAGRPA---GTVHLLV   91 (93)
T ss_dssp             ESSSSCS---CEEEEEE
T ss_pred             EECCccc---cEEEEEE
Confidence            9987543   3445544

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.51  E-value=1.8e-14  Score=94.44  Aligned_cols=85  Identities=18%  Similarity=0.287  Sum_probs=64.2

Q ss_pred             CCceec-CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAE-PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~-~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|.. .+..+.+.+|+++.|.|.+.|.|.+.+.|+++++....           +.     ....+.|.|.+++.+|+
T Consensus         4 ~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i~W~k~~~~~~~-----------~~-----~~~~~~L~I~~v~~~D~   67 (91)
T d1cs6a3           4 APSIKAKFPADTYALTGQMVTLECFAFGNPVPQIKWRKLDGSQTS-----------KW-----LSSEPLLHIQNVDFEDE   67 (91)
T ss_dssp             EEEEEECCCSEEEEETTCCEEEECEEEEESCCEEEEEECCSCCSC-----------CC-----SBSSSEEEECSCCGGGC
T ss_pred             CCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEEEEEecccccce-----------Ee-----eeeeeEEEeCCCCccCC
Confidence            466655 47889999999999999999999999999996643210           00     00112799999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |.|+|.+.|. |.....+.|.|+
T Consensus        68 G~Y~C~a~N~~G~~~~~~~l~V~   90 (91)
T d1cs6a3          68 GTYECEAENIKGRDTYQGRIIIH   90 (91)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEEE
Confidence            9999999876 445556667665

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.51  E-value=2.6e-14  Score=93.17  Aligned_cols=85  Identities=20%  Similarity=0.418  Sum_probs=64.1

Q ss_pred             CCceecCC-cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPV-ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~-~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .|.|...+ ..+.+.+|+++.|.|.+.|.|.+.+.|++++ ..+         .+.++.+..+     .|.|.+++.+|+
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v~W~~~~-~~i---------~~~~~~~~~~-----~L~i~~v~~~d~   66 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNVVWSHNA-KPL---------SGGRATVTDS-----GLVIKGVKNGDK   66 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCCEEEETT-EEC---------CSSSEEEETT-----EEEESSCCSTTC
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEEEEEeCC-ccC---------ccccEEEeee-----eEEECCCChhhC
Confidence            47777665 4577899999999999999999999999954 322         2345554432     699999999999


Q ss_pred             eEEEEEEecC-CCcceeEEEEE
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      |.|+|.+.|. |.....+.|.|
T Consensus        67 G~Y~C~a~N~~G~~~~~~~l~V   88 (89)
T d1biha4          67 GYYGCRATNEHGDKYFETLVQV   88 (89)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEE
T ss_pred             EEEEEEEEECCCEEEEEEEEEE
Confidence            9999999875 44444555554

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=8.2e-15  Score=93.92  Aligned_cols=79  Identities=19%  Similarity=0.341  Sum_probs=57.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeE-EecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .|.|.+.|....+.+|++++|.|.+.+.|.+... |+++ +..+...         +.     .|.|.+++.+|+|.|+|
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~~-~~~~~~~---------~~-----~l~i~~v~~~d~G~Y~C   65 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFHN-GSLSEET---------NS-----SLNIVNAKFEDSGEYKC   65 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEET-TEECSCC---------SS-----EEEECSCCGGGCEEEEE
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeeee-eeeeecc---------cc-----eeEECCCChhhCCcEEE
Confidence            3677777777889999999999999999988665 5654 4433222         12     89999999999999999


Q ss_pred             EEeeCCCCceeEEEEEE
Q psy15734        254 VAVNALGETDGFIKVYV  270 (314)
Q Consensus       254 ~a~n~~g~~~~~~~l~V  270 (314)
                      .|.|..+++  .+.|.|
T Consensus        66 ~a~~s~~S~--~v~l~V   80 (82)
T d1f2qa1          66 QHQQVNESE--PVYLEV   80 (82)
T ss_dssp             ECTTSSCCC--CEEEEE
T ss_pred             EecCCCCcc--cEEEEE
Confidence            999876554  445555

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.5e-13  Score=92.44  Aligned_cols=95  Identities=20%  Similarity=0.318  Sum_probs=67.3

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEe-CCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR-EYKVAWVKMITQTILSIHHKVVTQNKRVSITF-NDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d   98 (314)
                      .+.|+..+....+.+|+++.|.|.+.+.| .|.+.|+|++.......      ...+..... +......|.|.+++.+|
T Consensus         3 ~~~fi~~~~~~~v~~G~~v~L~C~v~g~p~~P~v~W~k~~~~~~~~~------~~~~~~~~~~~~~~~~~L~I~~v~~~D   76 (104)
T d2aw2a1           3 VQLYIKRQSEHSILAGDPFELECPVKYCANRPHVTWCKLNGTTCVKL------EDRQTSWKEEKNISFFILHFEPVLPND   76 (104)
T ss_dssp             CEECCCTTEEEEEETTSCEEEEEEEECSSSCCEEEEEEECSSCEEEC------CSSCEEEEECSSCEEEEEEESSCCGGG
T ss_pred             ccEEEecCCeEEEeCCCeEEEEEEEEeeCCCCEEEEEecCccccccc------ceeeeeEEecCCceEEEEEEccccHHH
Confidence            45677788899999999999999999987 48999999765432211      111222222 22233479999999999


Q ss_pred             CeEEEEEEecCCCc--ceeEEEEEE
Q psy15734         99 RGWYMCQINTVPMT--SQKGYLQVV  121 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~--~~~~~l~v~  121 (314)
                      +|.|+|.+.|..+.  +..+.|.|.
T Consensus        77 ~G~Y~C~A~N~~G~~~s~~~~l~V~  101 (104)
T d2aw2a1          77 NGSYRCSANFQSNLIESHSTTLYVT  101 (104)
T ss_dssp             CEEEEEEEEETTEEEECCCEEEEEE
T ss_pred             CCeEEEEEEcCCCeEEEEEEEEEEE
Confidence            99999999876432  445666664

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.9e-14  Score=94.21  Aligned_cols=80  Identities=18%  Similarity=0.249  Sum_probs=62.7

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCce
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETD  263 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~  263 (314)
                      ...+.+|+++.|.|.+.| |+|.+.|++++..+.....++.+  ..++     .|.|.++..+|+|.|+|.|.|..|...
T Consensus         6 ~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~l~~~~~~~~~--~~~~-----~L~I~~v~~~DsG~Y~C~A~n~~g~~~   77 (92)
T d1olza1           6 QHFFKHGGTAELKCSQKS-NLARVFWKFQNGVLKAESPKYGL--MGRK-----NLLIFNLSEGDSGVYQCLSEERVKNKT   77 (92)
T ss_dssp             EEEEETTSCEEECCCCSC-TTCEEEEEESSSBCCCCSSSBCC--TTTT-----CEEECSCCGGGCEEEEEEEEEECSSSE
T ss_pred             heeEeCCCEEEEEEEeec-cCCceeeecCcccceeeeeeeec--ceee-----EEEECCCCHHHCcEEEEEEEEcCCCEE
Confidence            356889999999999998 77899999976555544444332  3445     899999999999999999999999877


Q ss_pred             eEEEEEEE
Q psy15734        264 GFIKVYVN  271 (314)
Q Consensus       264 ~~~~l~V~  271 (314)
                      ....|.+.
T Consensus        78 ~~~~l~~~   85 (92)
T d1olza1          78 VFQVVAKH   85 (92)
T ss_dssp             EEEEEEEE
T ss_pred             EEEEEEEE
Confidence            66665444

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.50  E-value=1.8e-14  Score=98.14  Aligned_cols=96  Identities=20%  Similarity=0.203  Sum_probs=68.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEe-----CCceeEEEEEe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITF-----NDHRSWFLHLR   92 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~   92 (314)
                      .|.|+..|..+++.+|++++|.|.+.+.|   .+.+.|++++...+..      ....++....     .....+.|.|.
T Consensus         4 ~~~Fv~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~L~I~   77 (110)
T d2avga1           4 IGLFVMRPQDGEVTVGGSITFSARVAGASLLKPPVVKWFKGKWVDLSS------KVGQHLQLHDSYDRASKVYLFELHIT   77 (110)
T ss_dssp             TCSEEECCCCEEEETTSEEEEEEEEECCSCSSSCEEEEECSTTCCSTT------TCSSSEEEEEEEETTTTEEEEEEEEE
T ss_pred             CCEeEECCCeEEEECCCCEEEEEeecCCCCCCCCEEEEEeCceeeecc------cCCceeEeeeeeEEecccCEEEEEEe
Confidence            46788889999999999999999999877   5789999854322110      1111222111     11123479999


Q ss_pred             eecCCCCeEEEEEEecC-CCcceeEEEEEEe
Q psy15734         93 DVQETDRGWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      +++.+|+|.|+|.+.|. +..+..+.|.|.+
T Consensus        78 ~v~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~  108 (110)
T d2avga1          78 DAQPAFTGGYRCEVSTKDKFDCSNFNLTVHE  108 (110)
T ss_dssp             SCCTTCCEEEEEEEEETTEEEEEEEEEEEES
T ss_pred             ccCHHHCcEEEEEEEECCCeEEEEEEEEEEe
Confidence            99999999999999775 5667777788765

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.49  E-value=3.3e-14  Score=92.47  Aligned_cols=77  Identities=13%  Similarity=0.081  Sum_probs=57.9

Q ss_pred             CcceeecCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ....+.+|+++.|.|.+.+ .|.+.+.|++++.. +...       ..+.     .|.|.+++.+|+|.|+|.|.|..|.
T Consensus        10 p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng~~-~~~~-------~~~~-----~l~I~~v~~~dsG~Y~C~a~n~~~~   76 (89)
T d1fnla2          10 PRWVFKEEDPIHLRCHSWKNTALHKVTYLQNGKD-RKYF-------HHNS-----DFHIPKATLKDSGSYFCRGLVGSKN   76 (89)
T ss_dssp             SCSEEETTCCEEEEEEECTTCCCEEEEEEETTEE-EEEE-------EECC-----CEEESSCCGGGCEEEEEEEEETTEE
T ss_pred             CCCeEccCCeEEEEEEecCCCCCcEEEEEEcccc-ccee-------cccc-----ccEECccceeccceEEEEEEeCCCC
Confidence            3455889999999999975 56678999997433 2211       1222     8999999999999999999999886


Q ss_pred             c-eeEEEEEEEe
Q psy15734        262 T-DGFIKVYVNL  272 (314)
Q Consensus       262 ~-~~~~~l~V~~  272 (314)
                      . +..+.|.|++
T Consensus        77 ~~S~~v~itV~E   88 (89)
T d1fnla2          77 VSSETVNITITQ   88 (89)
T ss_dssp             EECCCEEEEEEC
T ss_pred             eEEeeEEEEEEe
Confidence            5 4567777753

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.49  E-value=3.2e-15  Score=102.99  Aligned_cols=98  Identities=18%  Similarity=0.320  Sum_probs=72.2

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCCeeeec-CCceeeeEeeCCeeeEEEEEEeecCCCC-CeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKGDMIIT-GDDYEDSRLINGYSCHMTLKIRSILSHQ-FGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~~~~~~-~~~~~~~~~~~~~~~~s~L~i~~~~~~d-~G~Y  251 (314)
                      ||.|.. +....+.+|+.+.|.|.+.|.| .+.+.|++++..+... ..++.+..........++|.|.++..+| +|.|
T Consensus         7 Pp~i~~-~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~s~L~I~~v~~~D~~G~Y   85 (115)
T d2crya1           7 PPIISS-TQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKENVLESGTSGRYTVETISTEEGVISTLTISNIVRADFQTIY   85 (115)
T ss_dssp             SCCEEE-ECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSCEECSEEETTEEEEEEEETTEEEEEEECTTCCHHHHHSCE
T ss_pred             CCEEec-CCCEEEecCCEEEEEEEeecCCCeeEEEEeeeeeeEeeeeeeeEeeeeeccccCcEEEEEEeccchhcCCeEE
Confidence            566653 4456788999999999999965 5578999975544322 2333333333333345689999999999 6999


Q ss_pred             EEEEeeCCCCceeEEEEEEEec
Q psy15734        252 RCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      +|.|.|..|.+++.+.|.|...
T Consensus        86 ~C~A~N~~G~~~~~~~L~V~~~  107 (115)
T d2crya1          86 NCTAWNSFGSDTEIIRLKEQGS  107 (115)
T ss_dssp             EEEEECSSCEEEEEECCCCSCS
T ss_pred             EEEEEECCCeEEEEEEEEEECC
Confidence            9999999999999999888643

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=1.6e-14  Score=99.00  Aligned_cols=97  Identities=15%  Similarity=0.187  Sum_probs=68.3

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCceeEEEeeeeeeecCcCEEEEe-----CCceeEEEEEeee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLR---EYKVAWVKMITQTILSIHHKVVTQNKRVSITF-----NDHRSWFLHLRDV   94 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~L~i~~~   94 (314)
                      .|+..|..+++.+|++++|.|.+.+.|   .+.|.|+|++...+.      .....++.+..     .....+.|.|.++
T Consensus         2 ~F~~~P~~~~v~~G~~v~l~C~v~g~p~~~~p~v~W~k~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~L~I~~v   75 (113)
T d2dava1           2 LFIEKPQGGTVKVGEDITFIAKVKAEDLLRKPTIKWFKGKWMDLA------SKAGKHLQLKETFERHSRVYTFEMQIIKA   75 (113)
T ss_dssp             SCCSCCCCCEEETTCCEEEEEEEECCCSSSCCEEEEEESSSCCHH------HHTTSSEEEEEEEETTTTEEEEEEEECSC
T ss_pred             EEeECCceEEEeCCCEEEEEEEEccCCCCCCCEEEEEEeeccccc------cccceeeeeccceeeEeecCEEEEEEccC
Confidence            367788899999999999999999876   479999996432111      01111221111     1112347999999


Q ss_pred             cCCCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         95 QETDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      +.+|+|.|+|.+.|. |..+..+.|.|..++.
T Consensus        76 ~~~D~G~Y~C~a~N~~G~~~~~~~L~V~~~~~  107 (113)
T d2dava1          76 KDNFAGNYRCEVTYKDKFDSCSFDLEVHESTG  107 (113)
T ss_dssp             CTTSCEEEEEEEECSSCEEEECCEEEEECCCC
T ss_pred             CHHHCeEEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            999999999999876 5556677888876553

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=5e-14  Score=92.23  Aligned_cols=78  Identities=21%  Similarity=0.207  Sum_probs=59.2

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..+|.|..+++.+.+.+|+++.|.|.+.+.+. +.+.|+|++.. +        ..+.+.....+    .+|.|.+++.+
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~~~i~W~k~~~~-l--------~~~~~~~~~~~----~~L~I~~v~~~   70 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDNATVHWVLRKPA-A--------GSHPSRWAGMG----RRLLLRSVQLH   70 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCCSEEEEEEECSS-S--------SCCCEEEEEES----SEEEECSCCGG
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCCceEEEEEcccc-c--------cceeeEEecCC----CEEEECCCChh
Confidence            45788888999999999999999999987654 68999996543 2        11222222222    27999999999


Q ss_pred             CCeEEEEEEecC
Q psy15734         98 DRGWYMCQINTV  109 (314)
Q Consensus        98 d~G~Y~C~~~~~  109 (314)
                      |+|.|+|.+.+.
T Consensus        71 D~G~Y~C~a~n~   82 (93)
T d1n26a1          71 DSGNYSCYRAGR   82 (93)
T ss_dssp             GCEEEEEESSSS
T ss_pred             cCEEEEEEECCc
Confidence            999999998654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.48  E-value=4.6e-14  Score=91.80  Aligned_cols=80  Identities=14%  Similarity=0.082  Sum_probs=60.5

Q ss_pred             CCcceeecCccEEEEEEEeec-CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        182 NQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +....+.+|++++|.|.+.+. |++.+.|++++ ..+....       .+.     .|.|.+++.+|+|.|+|+|.|..|
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g-~~~~~~~-------~~~-----~l~i~~~~~~dsG~Y~C~a~n~~~   73 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG-EALKYWY-------ENH-----NISITNATVEDSGTYYCTGKVWQL   73 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETT-EECCSCC-------CSS-----EEEESSCCGGGCEEEEEEEEETTE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEee-ecccccc-------ccc-----eEEEeeeeeecCcEEEEEEEeCCC
Confidence            344568899999999999776 45688899974 3332211       112     899999999999999999999887


Q ss_pred             Cc-eeEEEEEEEecC
Q psy15734        261 ET-DGFIKVYVNLVD  274 (314)
Q Consensus       261 ~~-~~~~~l~V~~~~  274 (314)
                      .. +..+.|.|...|
T Consensus        74 ~~~S~~v~i~V~~~P   88 (89)
T d1f2qa2          74 DYESEPLNITVIKAP   88 (89)
T ss_dssp             EEECCCEEEEEECSC
T ss_pred             CeEeeeEEEEEEeCC
Confidence            64 467788888765

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.47  E-value=4.2e-14  Score=91.22  Aligned_cols=78  Identities=19%  Similarity=0.270  Sum_probs=59.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCce-eEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASL-NYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~-~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      |.+.+.+....+.+|++++|.|.+.+.|.+. +.|+++ +..+....         .     .|.|.++..+|+|.|+|.
T Consensus         5 p~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~~-g~~~~~~~---------~-----~l~i~~v~~~dsG~Y~C~   69 (85)
T d2fcba1           5 AVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFHN-GNLIPTHT---------Q-----PSYRFKANNNDSGEYTCQ   69 (85)
T ss_dssp             CEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEET-TEECTTCC---------S-----SEEEEECCGGGCEEEEEE
T ss_pred             CEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeecc-cccccccc---------c-----ceEEeeccccCCcEEEEE
Confidence            4567777778899999999999999998874 667775 44443221         1     899999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      |.|..+++.  +.|.|
T Consensus        70 a~ns~~S~~--v~l~V   83 (85)
T d2fcba1          70 TGQTSLSDP--VHLTV   83 (85)
T ss_dssp             CTTSBCCCC--EEEEE
T ss_pred             CCCCccccc--EEEEE
Confidence            998766554  44544

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.46  E-value=3.1e-13  Score=90.41  Aligned_cols=96  Identities=21%  Similarity=0.304  Sum_probs=68.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeec-CCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQ-ETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~-~~d   98 (314)
                      ||.|...+....+.+|+.+.|.|.+.+.|.+ .+.|++.+......   .......++.+...+.. ..|.|.+++ ..|
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~~i~W~k~~~~~~~~---~~~~~~~~~~~~~~~~~-~~L~I~~v~~~~D   77 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVTDWAWYKITDSEDKA---LMNGSESRFFVSSSQGR-SELHIENLNMEAD   77 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCCEEEEEECCSSSCEE---CCTTGGGTEEEEEETTE-EEEEECSCCTTTS
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCeeEEEEEeccceeeee---cccCCCceEEEEeCCCE-EEEEEeccccccC
Confidence            6888888889999999999999999998766 79999964321110   01122345655544433 379999998 579


Q ss_pred             CeEEEEEEecC-CCcceeEEEEE
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      +|.|+|.+.|. |..+..+.|.|
T Consensus        78 ~G~Y~C~A~N~~G~~~~~~~L~V  100 (101)
T d3b5ha1          78 PGQYRCNGTSSKGSDQAIITLRV  100 (101)
T ss_dssp             SEEEEEEEEETTEEEEEEEEEEE
T ss_pred             CEEEEEEEEECCCEEEEEEEEEE
Confidence            99999999876 44444555554

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.46  E-value=6.7e-13  Score=88.90  Aligned_cols=96  Identities=13%  Similarity=0.190  Sum_probs=67.5

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeee-e--eecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHK-V--VTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      +|.+..++..+.+.+|+++.|.|.+.+.+.+.+.|++.++......... .  .....+.....     ++|.|.+++.+
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~tL~I~~v~~~   75 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRVEWKFVQGSTTALVCYNSQITAPYADRVTFSS-----SGITFSSVTRK   75 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEEEEEEEETTEEEEEEETTEECGGGTTTEEEET-----TEEEESCCCGG
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeEEEEeccccceeeeccccccccceeeEEEecC-----CEEEEeECCcc
Confidence            3667778888999999999999999999999999999665433221111 1  11122333321     27999999999


Q ss_pred             CCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         98 DRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        98 d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |+|.|+|.+.+. +.....+.+.|.
T Consensus        76 D~G~Y~C~a~n~~g~~~~~~~v~v~  100 (102)
T d1f97a1          76 DNGEYTCMVSEEGGQNYGEVSIHLT  100 (102)
T ss_dssp             GCEEEEEEEEETTSSSEEEEEEEEE
T ss_pred             CCEEEEEEEEECCCCEEEEEEEEEE
Confidence            999999999765 444555555543

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.46  E-value=4.3e-14  Score=92.79  Aligned_cols=89  Identities=19%  Similarity=0.333  Sum_probs=64.7

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      +.|...|....+.+|+++.|.|.+.+.|.+.+.|++++.. +.      .....++....+    ++|.|.+++.+|+|.
T Consensus         2 ~~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~~~~~~-i~------~~~~~~~~~~~~----~~L~I~~~~~~D~G~   70 (92)
T d1epfa2           2 LMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTIIWKHKGRD-VI------LKKDVRFIVLSN----NYLQIRGIKKTDEGT   70 (92)
T ss_dssp             SEEEECCSSEECCTTSCEEECCEEECSSCCEEEEEETTEE-GG------GGCCTTEEECTT----SCEEETTCCGGGCEE
T ss_pred             cEEEEcCCCEEEeCCCcEEEEEEEeecCCCeEEEEEcCcc-cc------cccceeeeeeee----eeEEECCCCHHhCEE
Confidence            5677888999999999999999999999999999996543 21      111223332222    269999999999999


Q ss_pred             EEEEEecC-CCcceeEEEEEE
Q psy15734        102 YMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus       102 Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      |+|.+.|. +.......+.|.
T Consensus        71 Y~C~a~n~~~~~~~~~~i~Vi   91 (92)
T d1epfa2          71 YRCEGRILARGEINFKDIQVI   91 (92)
T ss_dssp             EEEEEEEGGGTEEEEEEEEEE
T ss_pred             EEEEEEECcCCEEEEEEEEEE
Confidence            99999774 333444445543

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=3.3e-13  Score=88.37  Aligned_cols=86  Identities=29%  Similarity=0.459  Sum_probs=62.2

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEE-eCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT-FNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .|..+++.+|+++.|.|.+.+.|.+.+.|++++ ..+.        ...+..+. ......+.|.|.+++++|+|.|+|.
T Consensus         2 ~P~~~~v~~G~~~~l~C~v~g~p~p~v~W~k~g-~~l~--------~~~~~~~~~~~~~~~~~L~I~~~~~~D~G~Y~C~   72 (91)
T d1rhfa1           2 APVKLTVSQGQPVKLNCSVEGMEEPDIQWVKDG-AVVQ--------NLDQLYIPVSEQHWIGFLSLKSVERSDAGRYWCQ   72 (91)
T ss_dssp             CCEEEEEETTCCEEEEEEEESCSSCCEEEEETT-EECC--------SSEEEEEEEETTEEEEEEEESSCCGGGCEEEEEE
T ss_pred             cCeeEEEcCCCeEEEEEEEEecCCceEEEEEee-cccc--------cceeeeeeecccCceeeEEECCCCcccCEEEEEE
Confidence            467889999999999999999999999999954 3322        12222222 2233345799999999999999999


Q ss_pred             EecCCCc--ceeEEEEEE
Q psy15734        106 INTVPMT--SQKGYLQVV  121 (314)
Q Consensus       106 ~~~~~~~--~~~~~l~v~  121 (314)
                      +.|....  +..+.|.|.
T Consensus        73 a~N~~G~~~S~~~~l~V~   90 (91)
T d1rhfa1          73 VEDGGETEISQPVWLTVE   90 (91)
T ss_dssp             ESSCTTCEECCCEEEEEE
T ss_pred             EEECCCCEEEEEEEEEEE
Confidence            9876332  445666664

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.45  E-value=2.1e-13  Score=91.17  Aligned_cols=90  Identities=12%  Similarity=0.114  Sum_probs=68.7

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEee-cCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEA-FPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      |+.+.+.+....+.+|++++|.|.+.| .|.|  .+.|++++.. +....       .......++|.|..+..+|+|.|
T Consensus         4 P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~~~-l~~~~-------~~~~~~~s~l~i~~~~~dd~g~y   75 (103)
T d1iama1           4 PERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGEKE-LKREP-------AVGEPAEVTTTVLVRRDHHGAQF   75 (103)
T ss_dssp             CSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETTEE-EEEEE-------CCTTTEEEEEEEECCSSCSSCEE
T ss_pred             CCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccccc-ccccc-------cccccceEEEEEeeehhHCCCEE
Confidence            677888887888999999999999987 5655  5679997433 32211       11122456899999999999999


Q ss_pred             EEEEeeCCCCceeEEEEEEEe
Q psy15734        252 RCVAVNALGETDGFIKVYVNL  272 (314)
Q Consensus       252 ~C~a~n~~g~~~~~~~l~V~~  272 (314)
                      +|+|.|..|.....+.+.+..
T Consensus        76 tC~A~n~~g~~~~~~~~~~s~   96 (103)
T d1iama1          76 SCRTELDLRPQGLELFENTSA   96 (103)
T ss_dssp             EEEEEEECGGGTSCEEEEECC
T ss_pred             EEEEEeCCCCccCeEeeeEcC
Confidence            999999999888887777653

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=99.44  E-value=2.4e-14  Score=95.09  Aligned_cols=82  Identities=17%  Similarity=0.261  Sum_probs=57.0

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ...+.+|+++.|.|.+.|.|.+.+.|++++ ..+.        .+.++.........++|.|.+++.+|+|.|+|.+.|.
T Consensus        14 ~~~v~~G~~v~l~C~~~g~P~p~i~W~kng-~~l~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~G~Y~C~a~N~   84 (97)
T d3dara1          14 LHAVPAANTVKFRCPAGGNPMPTMRWLKNG-KEFK--------QEHRIGGYKVRNQHWSLIMESVVPSDKGNYTCVVENE   84 (97)
T ss_dssp             EEEECTTCCEEEECCEEEESCCEEEEEETT-EECC--------GGGSTTCCEEEGGGTEEEECSCCGGGCEEEEEEEEET
T ss_pred             cEEECCCCcEEEEEEEeEECCCEEEEEECC-Eecc--------ccCceeeEEEcCCcEEEEECCCCcccCEEEEEEEEEC
Confidence            457889999999999999999999999954 3321        1111111111112237999999999999999999876


Q ss_pred             -CCcceeEEEEE
Q psy15734        110 -PMTSQKGYLQV  120 (314)
Q Consensus       110 -~~~~~~~~l~v  120 (314)
                       |..+..+.|.|
T Consensus        85 ~G~~~~~~~l~V   96 (97)
T d3dara1          85 YGSINHTYHLDV   96 (97)
T ss_dssp             TEEEEEEEEEEE
T ss_pred             CCEEEEEEEEEE
Confidence             44455555655

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.3e-13  Score=88.66  Aligned_cols=75  Identities=12%  Similarity=0.038  Sum_probs=58.1

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ...+.+|++++|.|.+.+.|.+.+.|++++.....         +.           ..|.|.+++.+|+|.|+|.+.|.
T Consensus         8 ~~~v~~G~~~~L~C~~~g~p~P~i~W~~~~~~~~~---------~~-----------~~l~i~~v~~~DsG~Y~C~a~N~   67 (84)
T d2nxyb2           8 DTHLLQGQSLTLTLESPPGSSPSVQCRSPRGKNIQ---------GG-----------KTLSVSQLELQDSGTWTCTVLQN   67 (84)
T ss_dssp             SSCEETTCCEEEEEECCTTCCCEEEEECTTCCEEE---------ES-----------SEEEESSCCGGGCEEEEEEEEET
T ss_pred             CeEEECCCeEEEEEEeEcCCchheEEEeeccccee---------ee-----------eeeeeeecccccccEEEEEEEeC
Confidence            45689999999999999999999999996543211         11           16999999999999999999776


Q ss_pred             -CCcceeEEEEEEeCC
Q psy15734        110 -PMTSQKGYLQVVVPP  124 (314)
Q Consensus       110 -~~~~~~~~l~v~~~p  124 (314)
                       +.....+.|.|...|
T Consensus        68 ~g~~~~~~~v~V~~~~   83 (84)
T d2nxyb2          68 QKKVEFKIDIVVLAFQ   83 (84)
T ss_dssp             TEEEEEEEEECEECCC
T ss_pred             CCEEEEEEEEEEEecC
Confidence             444556667666544

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.44  E-value=1.9e-13  Score=88.94  Aligned_cols=85  Identities=21%  Similarity=0.223  Sum_probs=59.5

Q ss_pred             CceecC-CcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         22 PRFAEP-VANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        22 p~~~~~-~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      |.++.+ +..+.+.+|+++.|.|.+. +.|.+.+.|++.+....            ...  . ....+.|.|.+++.+|+
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v~W~~~~~~~~------------~~~--~-~~~~~~L~i~~v~~~D~   67 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASVQWRGLDTSLG------------AVQ--S-DTGRSVLTVRNASLSAA   67 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEEEEESSTTTTC------------CEE--E-ESSEEEEEECSCCGGGC
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEEEEEEeeeeee------------eee--c-cCceeeEEcCccChhhC
Confidence            444444 4568889999999999985 67889999998554310            111  1 11234799999999999


Q ss_pred             eEEEEEEecCC-CcceeEEEEEE
Q psy15734        100 GWYMCQINTVP-MTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~~-~~~~~~~l~v~  121 (314)
                      |.|+|.+.|.. ..+..+.|.|+
T Consensus        68 G~Y~C~Asn~~g~~~~s~~l~Vy   90 (90)
T d1gsma1          68 GTRVCVGSCGGRTFQHTVQLLVY   90 (90)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CcEEEEEEeCCCcEEEEEEEEEC
Confidence            99999997753 33455566653

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.43  E-value=1.1e-13  Score=92.51  Aligned_cols=94  Identities=19%  Similarity=0.292  Sum_probs=63.8

Q ss_pred             CCceecCCcc--eEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVAN--VTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~--~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +|.|...+..  .++..|+++.|.|.+.|.|.+.+.|++++ ..+....    ....+... ..  ....|.|.+++.+|
T Consensus         3 PP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i~W~~~g-~~i~~~~----~~~~~~~~-~~--~~~~L~I~~v~~~D   74 (100)
T d1qz1a3           3 PPTVQARQSIVNATANLGQSVTLVCDADGFPEPTMSWTKDG-EPIENEE----EDDEKHIF-SD--DSSELTIRNVDKND   74 (100)
T ss_dssp             EEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEEEEEETT-EECCCC------CCSSEEE-CT--TSCEEEECSCCGGG
T ss_pred             CCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEEEEEeCC-ccccccc----ccceeEEe-ec--CceEEEeCCCCccc
Confidence            5666655544  45677999999999999999999999954 4332110    00111111 11  12379999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEEEe
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      +|.|+|.+.|. |..+..+.|.|.+
T Consensus        75 ~G~Y~C~a~N~~G~~~~~~~l~V~~   99 (100)
T d1qz1a3          75 EAEYVCIAENKAGEQDASIHLKVFA   99 (100)
T ss_dssp             CEEEEEEEEETTEEEEEEEEEEEEC
T ss_pred             CEEEEEEEEECCCEEEEEEEEEEEE
Confidence            99999999875 4556666777764

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.42  E-value=3.1e-13  Score=88.24  Aligned_cols=82  Identities=15%  Similarity=0.257  Sum_probs=60.2

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      |+..+.+.+|+++.|.|.+.+.|.+.+.|++.++...          .....  .. .....|.|.+++.+|+|.|+|.+
T Consensus         7 P~~~~~~~~G~~v~l~C~~~g~p~p~i~W~~~~~~~~----------~~~~~--~~-~~~~~L~I~~v~~~d~G~Y~C~a   73 (90)
T d1vcaa2           7 PESRYLAQIGDSVSLTCSTTGCESPFFSWRTQIDSPL----------NGKVT--NE-GTTSTLTMNPVSFGNEHSYLCTA   73 (90)
T ss_dssp             SSSEEEEETTSCEEEEEEEESCSSCEEEEEETTCCCC----------SSEEE--EE-TTEEEEEESSCCGGGCSEEEEEE
T ss_pred             CCCcEEEECCCEEEEEEeccCCCCceEEEEecCccce----------eeeee--ee-cCCcEEEEecccccccceEEEEE
Confidence            4456778899999999999999999999999664321          11111  11 12237999999999999999999


Q ss_pred             ecC-CCcceeEEEEEE
Q psy15734        107 NTV-PMTSQKGYLQVV  121 (314)
Q Consensus       107 ~~~-~~~~~~~~l~v~  121 (314)
                      .|. +..+..+.|.|+
T Consensus        74 ~N~~g~~~~~~~v~V~   89 (90)
T d1vcaa2          74 TCESRKLEKGIQVEIY   89 (90)
T ss_dssp             EETTEEEEEEEEEEEE
T ss_pred             EeCCCEEEEEEEEEEE
Confidence            775 445566667664

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.42  E-value=7.1e-13  Score=86.37  Aligned_cols=82  Identities=22%  Similarity=0.417  Sum_probs=59.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      ++.++....+.+|+++.|.|.+. +.|.+.+.|++++....          ..+.... +    +.|.|.+++.+|+|.|
T Consensus         5 ~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v~W~k~~~~~~----------~~~~~~~-~----~~L~i~~v~~~d~G~Y   69 (89)
T d1gl4b_           5 TVEEQRSQSVRPGADVTFICTAKSKSPAYTLVWTRLHNGKL----------PSRAMDF-N----GILTIRNVQPSDAGTY   69 (89)
T ss_dssp             EECSCCEEEECTTCCEEEEEEEEESSSCCEEEEEEGGGBCC----------CTTEEEE-T----TEEEECSCCGGGCEEE
T ss_pred             EEcCCCeEEEeCCCcEEEEEEccCCCCCCEEEEecCCceee----------ccccEee-c----eEEEEecCCcccCEEE
Confidence            34467788999999999999996 56788999999654321          1122221 1    2799999999999999


Q ss_pred             EEEEecC-CCcceeEEEEE
Q psy15734        103 MCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus       103 ~C~~~~~-~~~~~~~~l~v  120 (314)
                      +|.+.|. +..+..+.|.|
T Consensus        70 ~C~a~N~~G~~~~~~~l~V   88 (89)
T d1gl4b_          70 VCTGSNMFAMDQGTATLHV   88 (89)
T ss_dssp             EEEEECSSCEEEEEEEEEE
T ss_pred             EEEEEECCCEEEEEEEEEE
Confidence            9999876 44444455554

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.41  E-value=1.2e-12  Score=85.22  Aligned_cols=86  Identities=19%  Similarity=0.279  Sum_probs=62.4

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      |..++.++.+.+|+++.|.|.+. .|.+.+.|++++ ..+.      .....++.+..++. ...|.|.+++.+|+|.|+
T Consensus         3 i~~~l~~~~v~~G~~v~l~C~v~-~p~~~v~W~k~~-~~~~------~~~~~~~~~~~~~~-~~~L~I~~v~~~D~G~Y~   73 (90)
T d1x44a1           3 VTKQLEDTTAYCGERVELECEVS-EDDANVKWFKNG-EEII------PGPKSRYRIRVEGK-KHILIIEGATKADAAEYS   73 (90)
T ss_dssp             CSBCCCCEEEETTEEEEEEEECS-SSSCCCEEEETT-EECC------CSTTCSEEEEEETT-EEEEEEEEECTTTCSEEE
T ss_pred             EEcCCCCEEEeCCCcEEEEEEEC-CCCceEEEEEee-cccC------CCCCccEEEEEeCC-ccEEEECccccccCEEEE
Confidence            45678899999999999999995 477899999954 3221      12233455554443 347999999999999999


Q ss_pred             EEEecCCCcceeEEEEEE
Q psy15734        104 CQINTVPMTSQKGYLQVV  121 (314)
Q Consensus       104 C~~~~~~~~~~~~~l~v~  121 (314)
                      |.+.+   ....+.|.|.
T Consensus        74 C~a~n---~~~~a~l~V~   88 (90)
T d1x44a1          74 VMTTG---GQSSAKLSVD   88 (90)
T ss_dssp             EEETT---EEEEEEEEEE
T ss_pred             EEEec---ceEEEEEEEE
Confidence            99854   3444566654

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.41  E-value=3.8e-14  Score=92.25  Aligned_cols=84  Identities=18%  Similarity=0.137  Sum_probs=65.3

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      |..+..+..+.+|+++.|.|.+ +.|.|.+.|+++ +..+..+.++.+....+    .+.|.|.++..+|+|.|+|.|.|
T Consensus         4 i~~~l~d~~v~~G~~~~~~c~v-s~p~~~v~W~k~-g~~i~~~~~~~~~~~~~----~~~L~I~~~~~~D~G~Y~c~a~n   77 (89)
T d1tiua_           4 VEKPLYGVEVFVGETAHFEIEL-SEPDVHGQWKLK-GQPLTASPDCEIIEDGK----KHILILHNCQLGMTGEVSFQAAN   77 (89)
T ss_dssp             CSBCCCCEEEETTSCCCEEEBC-SSSSCCCBCCSS-SCCCCSSSSCEEEECSS----CEEEECCSCCSCCCSEECCBCSS
T ss_pred             EEcCCcCEEEeCCCcEEEEEEE-CCCCcEEEEEEe-eeecccceeEEEEeece----eEEEEEcCCChhcCEEEEEEECc
Confidence            3456788899999999999998 579999999997 55566666766654333    24899999999999999999977


Q ss_pred             CCCCceeEEEEEEE
Q psy15734        258 ALGETDGFIKVYVN  271 (314)
Q Consensus       258 ~~g~~~~~~~l~V~  271 (314)
                      ..    .+..|.|.
T Consensus        78 ~~----~sa~l~V~   87 (89)
T d1tiua_          78 AK----SAANLKVK   87 (89)
T ss_dssp             CB----CCEEEEEE
T ss_pred             eE----EEEEEEEE
Confidence            54    34556664

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.40  E-value=6.8e-13  Score=85.25  Aligned_cols=80  Identities=13%  Similarity=0.160  Sum_probs=59.0

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      |.|..+|.+..+.+|+++.|.|.+.|.|.+ .+.|+|++ ..+..        ..          ...+.|.....+|+|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i~W~k~g-~~i~~--------~~----------~~~~~l~~~~~~d~G   62 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTIVWWRGT-TKIGG--------PA----------PSPSVLNVTGVTQST   62 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEEEEEETT-EECSC--------SE----------ESSEEEEECCCSSCE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEEEEEECC-EECCC--------CC----------CcceEEecCCccccE
Confidence            889999999999999999999999998876 89999954 33211        00          013556666678999


Q ss_pred             EEEEEEecCCCc--ceeEEEEE
Q psy15734        101 WYMCQINTVPMT--SQKGYLQV  120 (314)
Q Consensus       101 ~Y~C~~~~~~~~--~~~~~l~v  120 (314)
                      .|+|.+.|..+.  +..+.|.|
T Consensus        63 ~Y~C~A~N~~G~~~S~~~~v~V   84 (85)
T d1rhfa2          63 MFSCEAHNLKGLASSRTATVHL   84 (85)
T ss_dssp             EEEEEEEETTEEEECCCEEEEE
T ss_pred             EEEEEEEcCCCcEEEEEEEEEE
Confidence            999999886433  33455554

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.40  E-value=2e-13  Score=90.00  Aligned_cols=80  Identities=20%  Similarity=0.285  Sum_probs=60.2

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCc-eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLRE-YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~-~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .|.|...|..+.+.+|+.+.|.|.+.+.|. ..+.|++++. .+.       ....+......   .++|.|.+++.+|+
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~~v~W~~~g~-~l~-------~~~~~~~~~~~---~~~L~i~~v~~~D~   70 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKYSWKKDGK-SYN-------WQEHNAALRKD---EGSLVFLRPQASDE   70 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSCEEEEEESSS-BCC-------TTTTTEEECTT---SCCEEESSCCGGGC
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCeeEEEEEeeee-eee-------eecceeeeccc---ceEEEEeccChhcC
Confidence            588988999999999999999999998875 4799999543 221       11222222211   23799999999999


Q ss_pred             eEEEEEEecCCC
Q psy15734        100 GWYMCQINTVPM  111 (314)
Q Consensus       100 G~Y~C~~~~~~~  111 (314)
                      |.|+|.+.|..+
T Consensus        71 G~Y~C~a~N~~G   82 (94)
T d1biha1          71 GHYQCFAETPAG   82 (94)
T ss_dssp             EEEEEEEEETTE
T ss_pred             eEEEEEEEeCCC
Confidence            999999987643

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=3.8e-13  Score=94.47  Aligned_cols=101  Identities=14%  Similarity=0.211  Sum_probs=68.3

Q ss_pred             CCCcee-----cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeee--------------------eeeecC
Q psy15734         20 DMPRFA-----EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHH--------------------KVVTQN   74 (314)
Q Consensus        20 ~~p~~~-----~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~--------------------~~~~~~   74 (314)
                      .||.+.     ..++.+.|.+|++++|.|.+.|.|.+.+.|++++.........                    ......
T Consensus         3 ~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~   82 (130)
T d1gxea_           3 EPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTVIWQKAITQGNKAPARPAPDAPEDTGDSDEWVFDKKLLCETE   82 (130)
T ss_dssp             BCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEEEEEEECCCSCSSCCCCCCCCCCCCCCSSCCCCSCCCCCSCS
T ss_pred             CCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeEEEeeCCeEccCCccceeeecccccccceeeecCCceeeccC
Confidence            456653     3467899999999999999999999999999965321100000                    001112


Q ss_pred             cCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC-CCcceeEEEEEE
Q psy15734         75 KRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV-PMTSQKGYLQVV  121 (314)
Q Consensus        75 ~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~  121 (314)
                      .++.+..... ...|.|.+++.+|+|.|+|.+.|. |..+..+.|.|.
T Consensus        83 ~r~~~~~~~~-~~~L~I~~v~~~D~G~Y~C~a~N~~G~~~~~~~l~V~  129 (130)
T d1gxea_          83 GRVRVETTKD-RSIFTVEGAEKEDEGVYTVTVKNPVGEDQVNLTVKVI  129 (130)
T ss_dssp             SSCEEEEETT-EEEEECSCCCTTTCEEEEEEEECSSCEEEEEEEEEEC
T ss_pred             ceEEEEECCC-EEEEEECcCChhcCEEEEEEEEECCCEEEEEEEEEEE
Confidence            3444443332 347999999999999999999876 555556666654

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.39  E-value=2.8e-13  Score=90.21  Aligned_cols=80  Identities=14%  Similarity=0.127  Sum_probs=58.9

Q ss_pred             eeecCccEEEEE------EEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        186 GAFVSQTVELHC------HTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       186 ~v~~g~~~~l~C------~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+..|.+..|.|      .+.++|.|.+.|++++ ..+......  ....++     .|.|.++..+|+|.|+|.|.|..
T Consensus        10 ~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kdg-~~l~~~~~~--~~~~~~-----~L~I~~v~~~D~G~Y~C~a~n~~   81 (103)
T d1iray2          10 KLPVAGDGGLVCPYMEFFKNENNELPKLQWYKDC-KPLLLDNIH--FSGVKD-----RLIVMNVAEKHRGNYTCHASYTY   81 (103)
T ss_dssp             EEESSSCEEEECTTGGGGCBTTTBCCCCEEEETT-EECCCCSSS--EEEETT-----EEEESSCCGGGCEEEEEEEEEEE
T ss_pred             EEecCCCEEEEcCCccccccCCCCCCEEEEEECC-ccccCCCcE--EEecCC-----EEEEcccccccCcEEEEEEEECc
Confidence            578899999999      6789999999999974 444333222  223344     89999999999999999999988


Q ss_pred             CCce----eEEEEEEEec
Q psy15734        260 GETD----GFIKVYVNLV  273 (314)
Q Consensus       260 g~~~----~~~~l~V~~~  273 (314)
                      |...    +.+.|.|...
T Consensus        82 ~g~~~~vt~~i~~~v~~~   99 (103)
T d1iray2          82 LGKQYPITRVIEFITLEE   99 (103)
T ss_dssp             TTEEEEEEEEEEEEEECC
T ss_pred             CCEEEEEEEEEEEEECCC
Confidence            7553    3444444433

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.37  E-value=1.5e-12  Score=86.04  Aligned_cols=91  Identities=21%  Similarity=0.170  Sum_probs=60.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEE-cCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVK-MITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .|.|. .+.++.+.+|+++.|.|.+.+.|.+.+.|++ .......        ...+..........++|.|.+++.+|+
T Consensus         2 ~P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~~~~~~~~~~~~~--------~~~~~~~~~~~~~~~~L~I~~v~~~D~   72 (96)
T d2c9aa1           2 TPHFL-RIQNVEVNAGQFATFQCSAIGRTVAGDRLWLQGIDVRDA--------PLKEIKVTSSRRFIASFNVVNTTKRDA   72 (96)
T ss_dssp             SCEEC-CCCCEEECSSSCEEEEEEEESCCCSSCEEEEEETTBCCC--------CEEEEEEEETTEEEEEEEECSCCGGGC
T ss_pred             cCeec-ccCCEEEeCCCEEEEEEEEeecCCCcEEEEEeeeeeeee--------cCCceeEEEeecCceEEEECCCCHHHC
Confidence            58887 4889999999999999999998766555433 2222111        111111122222334799999999999


Q ss_pred             eEEEEEEecCCCc--ceeEEEEE
Q psy15734        100 GWYMCQINTVPMT--SQKGYLQV  120 (314)
Q Consensus       100 G~Y~C~~~~~~~~--~~~~~l~v  120 (314)
                      |.|+|.+.|..+.  +..+.|.|
T Consensus        73 G~Y~C~a~N~~G~~~s~~a~L~V   95 (96)
T d2c9aa1          73 GKYRCMIRTEGGVGISNYAELVV   95 (96)
T ss_dssp             SEEEEEEEETTEEEEEEEEEEEE
T ss_pred             eEEEEEEEeCCCeEEEEEEEEEE
Confidence            9999999876443  33356665

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.37  E-value=5.2e-13  Score=90.44  Aligned_cols=82  Identities=20%  Similarity=0.307  Sum_probs=61.5

Q ss_pred             cceeecCccEEEEEEE-eecCCceeEEecCCCeeeecCC----ceeeeEeeCCeeeEEEEEEeecCCCCCe---EEEEEE
Q psy15734        184 LEGAFVSQTVELHCHT-EAFPASLNYWTNEKGDMIITGD----DYEDSRLINGYSCHMTLKIRSILSHQFG---SYRCVA  255 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~-~g~p~p~~~W~~~~~~~~~~~~----~~~~~~~~~~~~~~s~L~i~~~~~~d~G---~Y~C~a  255 (314)
                      +..+.+|+++.|.|.+ .|.|.|.+.|++++........    ........++     +|.|.+++.+|+|   .|+|.|
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~~~~~~~~~~~~~~~~-----~L~i~~v~~~D~gd~g~Y~C~A   85 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNADVTDFDRRITAGPDG-----NLYFTIVTKEDVSDIYKYVCTA   85 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGGCCCCCCTTEEECTTS-----CEEEEEECGGGCCSSEEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccccceeeeeeecccccc-----ccEEeeeEeeccCCceEEEEEE
Confidence            3457789999999997 8999999999997544332211    1122334455     8999999999877   799999


Q ss_pred             eeCCCCceeEEEEEE
Q psy15734        256 VNALGETDGFIKVYV  270 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V  270 (314)
                      .|..|.+...+.+.+
T Consensus        86 ~N~~g~~~~~~~~~~  100 (111)
T d1biha2          86 KNAAVDEEVVLVEYE  100 (111)
T ss_dssp             ECTTCSSCEEEEEEE
T ss_pred             EeCCCCceEEEEEEE
Confidence            999998887765544

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=6e-14  Score=89.84  Aligned_cols=79  Identities=18%  Similarity=0.151  Sum_probs=58.9

Q ss_pred             Ccee--cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         22 PRFA--EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        22 p~~~--~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      |+|.  ..+..+++.+|+++.|.|.+.|.|.+.+.|++++.. +.        .              .+.+.+++.+|+
T Consensus         3 P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v~W~k~g~~-~~--------~--------------~~~~~~v~~~d~   59 (84)
T d2oz4a3           3 PRLDERDCPGNWTWPENSQQTPMCQAWGNPLPELKCLKDGTF-PL--------P--------------IGESVTVTRDLE   59 (84)
T ss_dssp             EECCGGGSCSEEEEETTCEECCCCCCEEESCCEEEEEETTTE-EC--------C--------------TTSCEECCGGGC
T ss_pred             CceeecCCCccEEEeCCCEEEEEEEEeEcCccEEEEEEeecc-ce--------e--------------eeeeeccccCCC
Confidence            5553  346788999999999999999999999999995532 11        1              133456788999


Q ss_pred             eEEEEEEecC-CCcceeEEEEEEeC
Q psy15734        100 GWYMCQINTV-PMTSQKGYLQVVVP  123 (314)
Q Consensus       100 G~Y~C~~~~~-~~~~~~~~l~v~~~  123 (314)
                      |.|+|.+.|. +..+..+.|.|..|
T Consensus        60 G~Y~C~A~N~~G~~~~~~~l~V~~P   84 (84)
T d2oz4a3          60 GTYLCRARSTQGEVTREVTVNVLSP   84 (84)
T ss_dssp             EEEEEEEEETTEEEEEEEEEEEECC
T ss_pred             CEEEEEEEcCCCEEEEEEEEEEECC
Confidence            9999999876 44456667777543

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.36  E-value=1.6e-12  Score=87.52  Aligned_cols=94  Identities=13%  Similarity=0.175  Sum_probs=63.5

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeee---eecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKV---VTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +.+...+..+.+.+|+++.|.|.+.+.|.+.+.|++++...........   .....+.....     +.|.|.+++.+|
T Consensus         5 v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~L~I~~v~~~D   79 (105)
T d1nbqa1           5 VTVHSSEPEVRIPENNPVKLSCAYSGFSSPRVEWKFDQGDTTRLVCYNNKITASYEDRVTFLP-----TGITFKSVTRED   79 (105)
T ss_dssp             CEEECSCSBCCEETTCCCEEECEEESCSSEEEEEEEEETTEEEESEETTEECTTTTTTCEEET-----TEEECSCCCTTS
T ss_pred             eEEECCCCeEEEeCCCeEEEEEEeCCCCCCeeEEEeeeeceeeeeeccceeeccccceeeecC-----ceEEEecccccc
Confidence            3444566778899999999999999999999999996544322211110   11122333321     279999999999


Q ss_pred             CeEEEEEEecC-CCcceeEEEEE
Q psy15734         99 RGWYMCQINTV-PMTSQKGYLQV  120 (314)
Q Consensus        99 ~G~Y~C~~~~~-~~~~~~~~l~v  120 (314)
                      +|.|+|.+.|. +.....+.|.|
T Consensus        80 ~G~Y~C~a~n~~G~~~~~~~v~v  102 (105)
T d1nbqa1          80 TGTYTCMVSEEGGNSYGEVKVKL  102 (105)
T ss_dssp             CSEEEEEEEETTSSCEECCEEEC
T ss_pred             eeeEEEEEEECCCCEEEEEEEEE
Confidence            99999999775 44444444444

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=99.36  E-value=2.2e-12  Score=85.33  Aligned_cols=85  Identities=15%  Similarity=0.209  Sum_probs=59.7

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      ++.+.+.+|+++.|.|.+.+.|.+.+.|++++ ..+..      ....++... ......+|.|.+++.+|+|.|+|.+.
T Consensus        10 ~~~~~~~~G~~v~l~C~~~g~P~~~v~W~k~g-~~i~~------~~~~~~~~~-~~~~~~~L~I~~~~~~D~G~Y~C~a~   81 (97)
T d1biha3          10 SKDMMAKAGDVTMIYCMYGSNPMGYPNYFKNG-KDVNG------NPEDRITRH-NRTSGKRLLFKTTLPEDEGVYTCEVD   81 (97)
T ss_dssp             CCSEEEETTSCEEEEEEEECSSCCCCEEEETT-EECCC------CTTSSEESC-SSSTTSEEEESSCCGGGCEEEEEEEC
T ss_pred             CCCEEEecCCeEEEEEEEEEecCCEEEEEEee-eeccc------cceeeeeee-eecCCCEEEEEeccccccEEEEEEEE
Confidence            46789999999999999999999999999954 33221      111222211 12222479999999999999999998


Q ss_pred             cCCCc--ceeEEEEE
Q psy15734        108 TVPMT--SQKGYLQV  120 (314)
Q Consensus       108 ~~~~~--~~~~~l~v  120 (314)
                      |..+.  +..+.|.|
T Consensus        82 N~~G~~~s~s~~L~V   96 (97)
T d1biha3          82 NGVGKPQKHSLKLTV   96 (97)
T ss_dssp             CSSSSCEEEEEEEEE
T ss_pred             ECCCcEEEEEEEEEE
Confidence            76332  34556665

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.35  E-value=2.5e-12  Score=84.89  Aligned_cols=84  Identities=20%  Similarity=0.408  Sum_probs=61.8

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      .....+.+|++++|.|.+.+ +.+.+.|++++ ..+        ..+.+..+....   ..|.|.+++.+|+|.|+|.+.
T Consensus        10 ~~~~~v~~g~~v~l~C~~~~-~~~~v~W~~~~-~~l--------~~~~~~~~~~~~---~~L~I~~v~~~d~G~Y~C~a~   76 (96)
T d1l6za2          10 VTNTTVKELDSVTLTCLSND-IGANIQWLFNS-QSL--------QLTERMTLSQNN---SILRIDPIKREDAGEYQCEIS   76 (96)
T ss_dssp             CSCSEECTTSCEEEEECCCC-SSCEEEEEETT-EEC--------CCCTTEEEETTT---TEEEECSCCGGGCEEEEEEEE
T ss_pred             cCceEEeCCCeEEEEEccCC-CCCCEEEEEee-eec--------ccccceeccCCc---eEEEEeccchhhceEEEEEEE
Confidence            45678999999999999876 55799999954 332        234444444322   279999999999999999998


Q ss_pred             cCCCc--ceeEEEEEEeCC
Q psy15734        108 TVPMT--SQKGYLQVVVPP  124 (314)
Q Consensus       108 ~~~~~--~~~~~l~v~~~p  124 (314)
                      |....  +..+.|.|..+|
T Consensus        77 N~~g~~~S~~~~L~V~~~P   95 (96)
T d1l6za2          77 NPVSVRRSNSIKLDIIFDP   95 (96)
T ss_dssp             SSSCCEECCCCEEEECCSC
T ss_pred             eCCCCeEEEeEEEEEEcCC
Confidence            76332  345778887766

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.35  E-value=4.4e-12  Score=83.24  Aligned_cols=89  Identities=13%  Similarity=0.199  Sum_probs=63.2

Q ss_pred             CCCceecCCc-ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         20 DMPRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        20 ~~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..|.|+.... ...|.+|+++.|.|.+.+ +.+.+.|++++.. +.       ..+.++.+...+. ...|.|.+++.+|
T Consensus         4 ~~~~f~~~l~~~~~v~~G~~v~l~c~v~~-p~~~v~W~k~g~~-i~-------~~~~~~~~~~~~~-~~~L~I~~~~~~D   73 (94)
T d1pd6a_           4 KSTAFQKKLEPAYQVSKGHKIRLTVELAD-HDAEVKWLKNGQE-IQ-------MSGSKYIFESIGA-KRTLTISQCSLAD   73 (94)
T ss_dssp             TTSSCSEECCSEEEEETTSCEEEEEECSS-SSSCCEEEESSSE-EC-------CCSSSSEEEEETT-EEEEEECSCSSSS
T ss_pred             CCCcEEEeCCCCEEECcCCeEEEEEEECC-CCceEEEEEcCcc-ce-------eeeeeEeeeccCC-eEEeecCCCCcee
Confidence            4678887765 468999999999999955 7789999995543 21       2233444444432 3479999999999


Q ss_pred             CeEEEEEEecCCCcceeEEEEEE
Q psy15734         99 RGWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus        99 ~G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      +|.|+|.+.+   ....+.|.|.
T Consensus        74 ~G~Y~c~a~n---~~~s~~l~V~   93 (94)
T d1pd6a_          74 DAAYQCVVGG---EKCSTELFVK   93 (94)
T ss_dssp             CEEEEEEETT---EEECCEEEEE
T ss_pred             cEEEEEEEee---EEEEEEEEEE
Confidence            9999999854   2334455553

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=99.34  E-value=2.4e-13  Score=88.39  Aligned_cols=85  Identities=18%  Similarity=0.171  Sum_probs=64.7

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .|..++.++.+.+|+++.|.|.+. .|.+.+.|++++..         +..+.++.+...+.. ..|.|.+++.+|+|.|
T Consensus         3 ~i~~~l~d~~v~~G~~~~~~c~vs-~p~~~v~W~k~g~~---------i~~~~~~~~~~~~~~-~~L~I~~~~~~D~G~Y   71 (89)
T d1tiua_           3 EVEKPLYGVEVFVGETAHFEIELS-EPDVHGQWKLKGQP---------LTASPDCEIIEDGKK-HILILHNCQLGMTGEV   71 (89)
T ss_dssp             CCSBCCCCEEEETTSCCCEEEBCS-SSSCCCBCCSSSCC---------CCSSSSCEEEECSSC-EEEECCSCCSCCCSEE
T ss_pred             EEEcCCcCEEEeCCCcEEEEEEEC-CCCcEEEEEEeeee---------cccceeEEEEeecee-EEEEEcCCChhcCEEE
Confidence            466788999999999999999984 57789999995533         334566766665443 3899999999999999


Q ss_pred             EEEEecCCCcceeEEEEEE
Q psy15734        103 MCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus       103 ~C~~~~~~~~~~~~~l~v~  121 (314)
                      +|.+.+.   ...+.|.|.
T Consensus        72 ~c~a~n~---~~sa~l~V~   87 (89)
T d1tiua_          72 SFQAANA---KSAANLKVK   87 (89)
T ss_dssp             CCBCSSC---BCCEEEEEE
T ss_pred             EEEECce---EEEEEEEEE
Confidence            9998553   234555554

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.34  E-value=4.6e-13  Score=90.04  Aligned_cols=90  Identities=11%  Similarity=0.050  Sum_probs=62.5

Q ss_pred             EcCCCcceeecCccEEEEEEEee-c--CCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEA-F--PASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g-~--p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      .+......+.+|+.++|+|.+.| .  |.+.+.|++++ ..+.........  .......+.|.|.....+|.|.|+|+|
T Consensus         6 ~i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~~~-~~i~~~~~~~~~--~~~~~~~s~l~~~~~~~d~g~~ytC~A   82 (106)
T d1zxqa1           6 ILTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFRGN-ETLHYETFGKAA--PAPQEATATFNSTADREDGHRNFSCLA   82 (106)
T ss_dssp             EEEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEETT-EEEEEEECCSST--TCTTCEEEEEEEECCGGGGGCEEEEEE
T ss_pred             EecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEcCC-EEeeecccceEe--ecccceeEEEEEeeehhcCCcEEEEEE
Confidence            34555567889999999999987 4  44588999974 444332222221  122334567888888888899999999


Q ss_pred             eeCCCCceeEEEEEEE
Q psy15734        256 VNALGETDGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~~~~~~l~V~  271 (314)
                      .|..+.....+.+.+.
T Consensus        83 ~n~~~~~~~~~~~~~s   98 (106)
T d1zxqa1          83 VLDLMSRGGNIFHKHS   98 (106)
T ss_dssp             EEECGGGTCCEEEEEC
T ss_pred             EecCCCCCCeeEeccc
Confidence            9999877666666553

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=99.33  E-value=1.8e-12  Score=88.05  Aligned_cols=90  Identities=22%  Similarity=0.292  Sum_probs=56.0

Q ss_pred             eEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         31 VTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..+.+|+++.|.|.+. +.+.+.+.|++++ ..+................... ...+.|.|.+++.+|+|.|+|.+.|.
T Consensus        12 ~~v~~G~~v~L~C~~~~g~p~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~l~I~~v~~~D~G~Y~C~a~N~   89 (110)
T d1f97a2          12 SSVTIGNRAVLTCSEHDGSPPSEYSWFKDG-ISMLTADAKKTRAFMNSSFTID-PKSGDLIFDPVTAFDSGEYYCQAQNG   89 (110)
T ss_dssp             SEEETTSCEEEEEECSCCBSCCEEEEEETT-EESBC-----CBSCSSSCEEEC-TTTCCEEESSCCGGGCEEEEEEEECS
T ss_pred             CEEecCCeEEEEEEeecCCCCCEEEEEeCC-eEecCCCceeEEeecCceEEEe-ecccceEECCCCccCCEEEEEEEEEC
Confidence            4688999999999985 6888999999954 3332211111111111111111 11236999999999999999999875


Q ss_pred             -CCc--ceeEEEEEEe
Q psy15734        110 -PMT--SQKGYLQVVV  122 (314)
Q Consensus       110 -~~~--~~~~~l~v~~  122 (314)
                       |..  +..++|.|..
T Consensus        90 ~G~~~~s~~v~l~V~~  105 (110)
T d1f97a2          90 YGTAMRSEAAHMDAVE  105 (110)
T ss_dssp             SSCCEECCCEEEEEES
T ss_pred             CCcEEEEEEEEEEEEe
Confidence             323  3345666653

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=1.7e-13  Score=89.90  Aligned_cols=87  Identities=17%  Similarity=0.203  Sum_probs=63.5

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|.|...+....+.+|+++.|.|.+.+.|.+.+.|++++...... ..       .    ........|.|.+++.+|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v~W~~~~~~~~~~-~~-------~----~~~~~~~~L~i~~~~~~d~G   69 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQAGWILTELEQSAT-VM-------K----SGGLPSLGLTLANVTSDLNR   69 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCCCEEESCCCSSEE-EC-------C----CCCSSEEEEEEESCCSTTTT
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEEEEEECCceeeee-ee-------e----eeeccceeEEEccccccccc
Confidence            488888888999999999999999999999999999965332111 00       0    11122347999999999999


Q ss_pred             -EEEEEEecC-CCcceeEEEE
Q psy15734        101 -WYMCQINTV-PMTSQKGYLQ  119 (314)
Q Consensus       101 -~Y~C~~~~~-~~~~~~~~l~  119 (314)
                       .|+|.+.|. |.....+.|.
T Consensus        70 ~~Y~C~a~N~~G~~~~s~~l~   90 (92)
T d2ifga1          70 KNVTCWAENDVGRAEVSVQVN   90 (92)
T ss_dssp             CCEEECCEETTEECCEEECCC
T ss_pred             eEEEEEEEcCCCEEEEEEEEE
Confidence             699999876 3344444443

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=2.7e-12  Score=82.31  Aligned_cols=81  Identities=15%  Similarity=0.013  Sum_probs=57.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...|...++.+|++++|.|.+.+.+.+.+.|++.++..+.        .+.           ..|.|.+++.+|+
T Consensus         4 Pkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~~~~~~~~~~~~--------~~~-----------~~l~i~~~~~~d~   64 (84)
T d1fnla1           4 PKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNSTQWFHNESLIS--------SQA-----------SSYFIDAATVNDS   64 (84)
T ss_dssp             CCCEEEEESCCSEEETTCCEEEEEECCCBTTBCCCEEEETTEEEE--------SSC-----------SEEEESSCCGGGC
T ss_pred             CCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeEEEEeeeceeee--------ecc-----------eeeEecCCcccCC
Confidence            457777788889999999999999998877765444433544321        111           1799999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQV  120 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v  120 (314)
                      |.|+|.+.+. ..+..+.|.|
T Consensus        65 G~Y~C~a~~s-~~S~~v~L~V   84 (84)
T d1fnla1          65 GEYRCQTNLS-TLSDPVQLEV   84 (84)
T ss_dssp             EEEEEECSSS-CCCCCEEEEE
T ss_pred             EEEEEEccCC-CccccEEEEC
Confidence            9999998643 3344455543

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=99.33  E-value=4.9e-12  Score=81.92  Aligned_cols=79  Identities=13%  Similarity=0.086  Sum_probs=54.9

Q ss_pred             cCCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+....+.+|++++|.|.+. +.+.+.+.||+++ ..+...              .   ....|.|.+++.+|+|.|+|
T Consensus         7 lq~p~~~v~eG~~v~L~C~~~~~~p~~~~~W~kng-~~~~~~--------------~---~~~~l~I~~v~~~dsG~Y~C   68 (89)
T d1fnla2           7 LQAPRWVFKEEDPIHLRCHSWKNTALHKVTYLQNG-KDRKYF--------------H---HNSDFHIPKATLKDSGSYFC   68 (89)
T ss_dssp             EECSCSEEETTCCEEEEEEECTTCCCEEEEEEETT-EEEEEE--------------E---ECCCEEESSCCGGGCEEEEE
T ss_pred             EECCCCeEccCCeEEEEEEecCCCCCcEEEEEEcc-ccccee--------------c---cccccEECccceeccceEEE
Confidence            334455689999999999986 4567799999954 332210              0   01169999999999999999


Q ss_pred             EEecCCC--cceeEEEEEEe
Q psy15734        105 QINTVPM--TSQKGYLQVVV  122 (314)
Q Consensus       105 ~~~~~~~--~~~~~~l~v~~  122 (314)
                      .+.+...  .+..+.|.|++
T Consensus        69 ~a~n~~~~~~S~~v~itV~E   88 (89)
T d1fnla2          69 RGLVGSKNVSSETVNITITQ   88 (89)
T ss_dssp             EEEETTEEEECCCEEEEEEC
T ss_pred             EEEeCCCCeEEeeEEEEEEe
Confidence            9976532  23445666653

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.33  E-value=7.7e-12  Score=83.51  Aligned_cols=95  Identities=12%  Similarity=0.044  Sum_probs=64.6

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEE----eCCceeEEEEEeeec
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT----FNDHRSWFLHLRDVQ   95 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~~~L~i~~~~   95 (314)
                      .+|.+......   ..+....|.|.+.|.|.+.+.|++++ ..+.        .+.+..+.    ........|.|.+++
T Consensus         3 ~pP~it~~~~~---~~~~~~~i~~~v~G~P~P~i~W~~~g-~~l~--------~~~~~~~~~~~~~~~~~~~~L~i~~~~   70 (103)
T d1wwbx_           3 FAPTITFLESP---TSDHHWCIPFTVKGNPKPALQWFYNG-AILN--------ESKYICTKIHVTNHTEYHGCLQLDNPT   70 (103)
T ss_dssp             CCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETT-EEEC--------CCSSEEEEEEEECSSEEEEEEEEESCC
T ss_pred             cCCeeEEcCCC---ccceeEEEEEEEEEeCCCEEEEEECC-EEee--------eeeeeeeeecccccccceEEEEECCCC
Confidence            46666433222   35677889999999999999999954 4332        12222211    112223479999999


Q ss_pred             CCCCeEEEEEEecC-CCcceeEEEEEEeCCce
Q psy15734         96 ETDRGWYMCQINTV-PMTSQKGYLQVVVPPRI  126 (314)
Q Consensus        96 ~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~~  126 (314)
                      .+|+|.|+|.+.|. |..+..+.|.|..+|.+
T Consensus        71 ~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P~i  102 (103)
T d1wwbx_          71 HMNNGDYTLIAKNEYGKDEKQISAHFMGWPGI  102 (103)
T ss_dssp             GGGCEEEEEEEECSSCEEEEEEEECCSCCCCC
T ss_pred             HHhCceEEEEEeccCCEEEEEEEEEEEeCCCC
Confidence            99999999999876 55666777777777654

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.32  E-value=4.5e-12  Score=81.96  Aligned_cols=76  Identities=14%  Similarity=0.156  Sum_probs=54.4

Q ss_pred             ceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         30 NVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      ...+.+|++++|.|.+.+ .+.+.+.|||++ ..+..      ..           .+..|.|.+++.+|+|.|+|.+.|
T Consensus         9 ~~~v~eG~~v~L~C~~~~~~p~~~~~W~k~g-~~~~~------~~-----------~~~~l~i~~v~~~dsG~Y~C~a~n   70 (88)
T d2fcba2           9 HLEFQEGETIVLRCHSWKDKPLVKVTFFQNG-KSKKF------SR-----------SDPNFSIPQANHSHSGDYHCTGNI   70 (88)
T ss_dssp             CSEECTTCCEEEEEEEGGGCCCEEEEEEETT-EEEEE------ES-----------SCCEEEETTCCGGGCEEEEEEEEE
T ss_pred             CCeEecCCeEEEEEEecCCCCCcEEEEEeec-ccccc------cc-----------cccccccCccCHHHCCeEEEEEEe
Confidence            455889999999999964 567899999954 33211      00           112699999999999999999977


Q ss_pred             CCC--cceeEEEEEEeC
Q psy15734        109 VPM--TSQKGYLQVVVP  123 (314)
Q Consensus       109 ~~~--~~~~~~l~v~~~  123 (314)
                      ...  .+..+.|.|+.|
T Consensus        71 ~~g~~~S~~v~l~V~~P   87 (88)
T d2fcba2          71 GYTLYSSKPVTITVQAP   87 (88)
T ss_dssp             TTEEEECCCEEEEECCC
T ss_pred             CCCCEEeeeEEEEEeCC
Confidence            532  234566776654

>d1f2qa2 b.1.1.4 (A:86-174) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.31  E-value=3.5e-12  Score=82.72  Aligned_cols=80  Identities=18%  Similarity=0.243  Sum_probs=57.6

Q ss_pred             CcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEE
Q psy15734         28 VANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQI  106 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~  106 (314)
                      +....+.+|+.++|.|.+.+ .+...+.|||++ ..+.        ..         .....|.|.+++.+|+|.|+|.+
T Consensus         7 ~p~~~V~eG~~v~L~C~~~~~~~~~~~~w~k~g-~~~~--------~~---------~~~~~l~i~~~~~~dsG~Y~C~a   68 (89)
T d1f2qa2           7 ASAEVVMEGQPLFLRCHGWRNWDVYKVIYYKDG-EALK--------YW---------YENHNISITNATVEDSGTYYCTG   68 (89)
T ss_dssp             ESCSEEETTSCEEEEEEEGGGCCEEEEEEEETT-EECC--------SC---------CCSSEEEESSCCGGGCEEEEEEE
T ss_pred             CCcCeEeCCCEEEEEEEecCCCCCeEEEEEEee-eccc--------cc---------cccceEEEeeeeeecCcEEEEEE
Confidence            34456899999999999965 466799999954 3221        00         01126999999999999999999


Q ss_pred             ecCCC--cceeEEEEEEeCCc
Q psy15734        107 NTVPM--TSQKGYLQVVVPPR  125 (314)
Q Consensus       107 ~~~~~--~~~~~~l~v~~~p~  125 (314)
                      .+...  .+..+.|.|..+|+
T Consensus        69 ~n~~~~~~S~~v~i~V~~~Pr   89 (89)
T d1f2qa2          69 KVWQLDYESEPLNITVIKAPR   89 (89)
T ss_dssp             EETTEEEECCCEEEEEECSCC
T ss_pred             EeCCCCeEeeeEEEEEEeCCC
Confidence            77532  24557788887763

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.30  E-value=5.7e-13  Score=88.28  Aligned_cols=80  Identities=16%  Similarity=0.218  Sum_probs=59.8

Q ss_pred             CCCceecCCcceEEEcC---CcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         20 DMPRFAEPVANVTATVG---KEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g---~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+|.|+.+|..+.+.+|   +++.|.|.+.+.|.+.+.|++++ ..+..      ..+.++... .+   ..|.|..++.
T Consensus         3 ~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v~W~~ng-~~i~~------~~~~~~~~~-~~---~~l~i~~~~~   71 (97)
T d1cs6a1           3 YGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATYRWKMNG-TELKM------GPDSRYRLV-AG---DLVISNPVKA   71 (97)
T ss_dssp             EEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEEEEEETT-EECCC------STTSSEEEE-TT---EEEEESCCHH
T ss_pred             cCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEEEEEEee-eeccC------CCCceEEee-ee---eEEEEecccc
Confidence            46889999999888877   68999999999999999999954 33211      112222222 11   2688899999


Q ss_pred             CCCeEEEEEEecCC
Q psy15734         97 TDRGWYMCQINTVP  110 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~  110 (314)
                      +|+|.|+|.+.|..
T Consensus        72 ~d~G~Y~C~a~N~~   85 (97)
T d1cs6a1          72 KDAGSYQCVATNAR   85 (97)
T ss_dssp             HHCEEEEEEEEETT
T ss_pred             cCCEEEEEEEEECC
Confidence            99999999998764

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.28  E-value=4.3e-12  Score=80.90  Aligned_cols=80  Identities=21%  Similarity=0.289  Sum_probs=56.0

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEE-EEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVA-WVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~-W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.|...|....+.+|++++|.|.+.+.+.+... |++ ++..+.        ..           ...|.|.+++.+|+
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~~~~-~~~~~~--------~~-----------~~~l~i~~v~~~d~   60 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSSTKWFH-NGSLSE--------ET-----------NSSLNIVNAKFEDS   60 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----CCEEEE-TTEECS--------CC-----------SSEEEECSCCGGGC
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecceeeee-eeeeee--------cc-----------cceeEECCCChhhC
Confidence            4778888888899999999999999887776544 555 544221        11           12699999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      |.|.|.+.+. ..+..+.|.|.
T Consensus        61 G~Y~C~a~~s-~~S~~v~l~V~   81 (82)
T d1f2qa1          61 GEYKCQHQQV-NESEPVYLEVF   81 (82)
T ss_dssp             EEEEEECTTS-SCCCCEEEEEE
T ss_pred             CcEEEEecCC-CCcccEEEEEE
Confidence            9999998653 33445666664

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.27  E-value=1.5e-11  Score=82.47  Aligned_cols=95  Identities=14%  Similarity=0.090  Sum_probs=62.4

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEE--EeC-CceeEEEEEeee
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSI--TFN-DHRSWFLHLRDV   94 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~--~~~-~~~~~~L~i~~~   94 (314)
                      +..+|+++...+.   ..+....|.|.+.|.|.+.+.|++++ ..+.        .+.++..  ..+ ......|.|.++
T Consensus         2 V~~PP~i~~~~~~---~~~~~~~i~~~v~G~P~P~v~W~~n~-~~i~--------~~~~~~~~~~~~~~~~~~~L~i~~~   69 (105)
T d1wwca_           2 VYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTLHWLHNG-QPLR--------ESKIIHVEYYQEGEISEGCLLFNKP   69 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEEEEEETT-EECC--------CSSSEEEEEEECSSEEEEEEEEESC
T ss_pred             EEcCCeeEEeCCC---EEEEEEEEEEEEEEeCCCeEEEEeCc-cccC--------CCcceeeeEEeecccceEEEEEeec
Confidence            3456777553322   23455678889999999999999954 4322        2222221  111 222347999999


Q ss_pred             cCCCCeEEEEEEecC-CCcceeEEEEEEeCC
Q psy15734         95 QETDRGWYMCQINTV-PMTSQKGYLQVVVPP  124 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p  124 (314)
                      +.+|+|.|+|.+.|. +..+..+.|.|..+|
T Consensus        70 ~~~D~G~Y~C~a~N~~G~~~~~~~v~V~~~P  100 (105)
T d1wwca_          70 THYNNGNYTLIAKNPLGTANQTINGHFLKEP  100 (105)
T ss_dssp             CGGGCEEEEEEEEETTEEEEEEEEECCSCCC
T ss_pred             ccccceEEEEEEEcCCCEEEEEEEEEEEeCC
Confidence            999999999999876 455566667766655

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.24  E-value=9.4e-13  Score=88.53  Aligned_cols=85  Identities=16%  Similarity=0.237  Sum_probs=54.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ||.+........+.+|++++|.|.+ .+.|.+.+.|++++.. +....... ...+.+...   ....+.|.|.+++.+|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v~W~~~~~~-i~~~~~~~~~~~~~~~~~---~~~~~~l~I~~v~~~D   77 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEYTWFKDGIV-MPTNPKSTRAFSNSSYVL---NPTTGELVFDPLSASD   77 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEEEEEETTCC-CCSCSSSSSSCTTCCCCC---CTTTCCEEESSCCGGG
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEEEEEECCEE-ccCCCceeEEeeCCcEEE---eecccceEECCCCccc
Confidence            3444444445678999999999998 4788899999995543 22111110 111111111   1122379999999999


Q ss_pred             CeEEEEEEecC
Q psy15734         99 RGWYMCQINTV  109 (314)
Q Consensus        99 ~G~Y~C~~~~~  109 (314)
                      +|.|+|.+.|.
T Consensus        78 ~G~Y~C~a~N~   88 (104)
T d1nbqa2          78 TGEYSCEARNG   88 (104)
T ss_dssp             CCCEEEEEECS
T ss_pred             CcEEEEEEEEC
Confidence            99999999876

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.23  E-value=9.4e-11  Score=81.41  Aligned_cols=102  Identities=20%  Similarity=0.261  Sum_probs=66.3

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC---CCceEEEEEEcCceeEEEeee--eee------ecCcCEEEEeCC--ceeEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN---LREYKVAWVKMITQTILSIHH--KVV------TQNKRVSITFND--HRSWFLH   90 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~---~~~~~v~W~~~~~~~~~~~~~--~~~------~~~~~~~~~~~~--~~~~~L~   90 (314)
                      +..|...+.+.+|++++|+|.+..   .....+.|++.+.........  ...      ....|..+....  .++.+|.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   84 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR   84 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence            456667799999999999999743   344679999965433221111  110      112355554432  2356899


Q ss_pred             EeeecCCCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         91 LRDVQETDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      |.+++.+|+|.|+|.+.+. +..+..+.|.|.+|..
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P~~  120 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDPFY  120 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECTTT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCCCE
Confidence            9999999999999999764 3345556788876543

>d1olza1 b.1.1.4 (A:537-628) Semaphorin 4d Ig-like domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Semaphorin 4d Ig-like domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.21  E-value=9.8e-12  Score=80.98  Aligned_cols=68  Identities=16%  Similarity=0.192  Sum_probs=50.5

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      +...+.+|+++.|.|.+.+ +.+.+.|++++.. +.       ....++.+..+    ++|.|.+++.+|+|.|+|.+.+
T Consensus         5 ~~~~~~~G~~~~l~C~~~g-~~~~v~W~~~g~~-l~-------~~~~~~~~~~~----~~L~I~~v~~~DsG~Y~C~A~n   71 (92)
T d1olza1           5 RQHFFKHGGTAELKCSQKS-NLARVFWKFQNGV-LK-------AESPKYGLMGR----KNLLIFNLSEGDSGVYQCLSEE   71 (92)
T ss_dssp             EEEEEETTSCEEECCCCSC-TTCEEEEEESSSB-CC-------CCSSSBCCTTT----TCEEECSCCGGGCEEEEEEEEE
T ss_pred             hheeEeCCCEEEEEEEeec-cCCceeeecCccc-ce-------eeeeeeeccee----eEEEECCCCHHHCcEEEEEEEE
Confidence            4577999999999999988 6679999995543 21       11223222222    2699999999999999999976


Q ss_pred             C
Q psy15734        109 V  109 (314)
Q Consensus       109 ~  109 (314)
                      .
T Consensus        72 ~   72 (92)
T d1olza1          72 R   72 (92)
T ss_dssp             E
T ss_pred             c
Confidence            4

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=99.21  E-value=1.5e-11  Score=78.91  Aligned_cols=80  Identities=15%  Similarity=0.155  Sum_probs=57.9

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCce-EEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREY-KVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~-~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +|.+...|....+.+|++++|.|.+.+.+.+ .+.|++ ++..+        ..+           +..|.|.+++.+|+
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~~~~w~~-~g~~~--------~~~-----------~~~l~i~~v~~~ds   63 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESDSIQWFH-NGNLI--------PTH-----------TQPSYRFKANNNDS   63 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTTCCEEEE-TTEEC--------TTC-----------CSSEEEEECCGGGC
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeeccceeEEEeec-ccccc--------ccc-----------ccceEEeeccccCC
Confidence            4567777888899999999999999886654 677887 44322        111           11599999999999


Q ss_pred             eEEEEEEecCCCcceeEEEEEE
Q psy15734        100 GWYMCQINTVPMTSQKGYLQVV  121 (314)
Q Consensus       100 G~Y~C~~~~~~~~~~~~~l~v~  121 (314)
                      |.|+|.+.+. ..+..+.|.|.
T Consensus        64 G~Y~C~a~ns-~~S~~v~l~V~   84 (85)
T d2fcba1          64 GEYTCQTGQT-SLSDPVHLTVL   84 (85)
T ss_dssp             EEEEEECTTS-BCCCCEEEEEE
T ss_pred             cEEEEECCCC-cccccEEEEEE
Confidence            9999998653 33445566653

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=7.5e-11  Score=79.36  Aligned_cols=95  Identities=12%  Similarity=0.097  Sum_probs=59.4

Q ss_pred             CCceecCCc-ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCC-----ceeEEEEEeee
Q psy15734         21 MPRFAEPVA-NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFND-----HRSWFLHLRDV   94 (314)
Q Consensus        21 ~p~~~~~~~-~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~L~i~~~   94 (314)
                      +|.++.+.. .+.+..|+++.|.|.+.+.|.+.+.|++++ ..+.........  .........     .....|.|.++
T Consensus         1 kP~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i~W~~~g-~~i~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~I~~v   77 (107)
T d1iray3           1 RPVIVSPANETMEVDLGSQIQLICNVTGQLSDIAYWKWNG-SVIDEDDPVLGE--DYYSVENPANKRRSTLITVLNISEI   77 (107)
T ss_dssp             CCEEEECCSEEEECCTTCCEEEEEEEEECTTCEEEEEETT-EECCTTCSSEEE--EEEEECCSSCGGGEEEEEEEEESSC
T ss_pred             CCCEEEECCCEEEEeCCCEEEEEEEeccCCCCeEEEEECC-cccccccceeee--eeeeeccceeeecccceEEEEEeec
Confidence            477777654 467888999999999999999999999954 322110000000  000000000     01237999999


Q ss_pred             cCCCCe-EEEEEEecC-CCcceeEEE
Q psy15734         95 QETDRG-WYMCQINTV-PMTSQKGYL  118 (314)
Q Consensus        95 ~~~d~G-~Y~C~~~~~-~~~~~~~~l  118 (314)
                      +.+|.| .|+|.+.|. |..+..+.|
T Consensus        78 ~~~D~g~~Y~C~A~N~~G~~~~~i~L  103 (107)
T d1iray3          78 ESRFYKHPFTCFAKNTHGIDAAYIQL  103 (107)
T ss_dssp             CGGGGSSCEEEEEECSSCEEEEEEEE
T ss_pred             chHHCCcEEEEEEEeCCCeEEEEEEE
Confidence            999999 599999876 444444443

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.18  E-value=5.8e-11  Score=78.99  Aligned_cols=93  Identities=11%  Similarity=0.093  Sum_probs=63.3

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecC-CCc--eEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVEN-LRE--YKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .+|.+...+....+.+|++++|.|.+.+ .|.  +.+.|++++ ..+....    .        ........|.|...+.
T Consensus         3 ~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~~~v~W~~~~-~~l~~~~----~--------~~~~~~s~l~i~~~~~   69 (103)
T d1iama1           3 TPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQLTVVLLRGE-KELKREP----A--------VGEPAEVTTTVLVRRD   69 (103)
T ss_dssp             CCSEEEECCCCSEECTTSEEEEEEEEECCBCGGGEEEEEEETT-EEEEEEE----C--------CTTTEEEEEEEECCSS
T ss_pred             CCCceEEeCCCceEeCCCEEEEEEEecCCCCCCceEEEEcccc-ccccccc----c--------ccccceEEEEEeeehh
Confidence            3566666777778999999999999986 343  478999954 4332110    0        1112234799999999


Q ss_pred             CCCeEEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734         97 TDRGWYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus        97 ~d~G~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      +|.|.|+|.+.|. +.......+.+..++.
T Consensus        70 dd~g~ytC~A~n~~g~~~~~~~~~~s~p~~   99 (103)
T d1iama1          70 HHGAQFSCRTELDLRPQGLELFENTSAPYQ   99 (103)
T ss_dssp             CSSCEEEEEEEEECGGGTSCEEEEECCCEE
T ss_pred             HCCCEEEEEEEeCCCCccCeEeeeEcCCCE
Confidence            9999999999775 4444455666655443

>d1iray1 b.1.1.4 (Y:1-101) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.17  E-value=2.6e-11  Score=80.38  Aligned_cols=86  Identities=17%  Similarity=0.196  Sum_probs=61.0

Q ss_pred             CCcceEEEcCCcEEEEEEec-CCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVE-NLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~-~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .+..+.+.+|+.+.|.|.+. +.+.+.+.|++++......     .....++....     ++|.|.+++.+|+|.|+|.
T Consensus         8 ~~~~~~~~~~e~~~l~C~~~~~~~~~~i~W~k~~~~~~~~-----~~~~~~~~~~~-----~~L~I~~v~~~D~G~Y~C~   77 (101)
T d1iray1           8 EKIILVSSANEIDVRPCPLNPNEHKGTITWYKDDSKTPVS-----TEQASRIHQHK-----EKLWFVPAKVEDSGHYYCV   77 (101)
T ss_dssp             CCCCEEEETTSCEEECCCCCGGGCSSEEEEECSSTTSBCC-----CCTTSSEEEET-----TEEEETTCCGGGCEEEEEE
T ss_pred             CCcEEEEeCCCeEEEEeeCCCCCCCceEEEEECCcccccc-----cccceEEeccC-----CEEEeccceecCCEEEEEE
Confidence            45567888999999999884 5688999999965432111     11223333321     2799999999999999999


Q ss_pred             EecC-CCcceeEEEEEEe
Q psy15734        106 INTV-PMTSQKGYLQVVV  122 (314)
Q Consensus       106 ~~~~-~~~~~~~~l~v~~  122 (314)
                      +.|. +.....+.|.|..
T Consensus        78 a~N~~g~~~~~~~L~V~~   95 (101)
T d1iray1          78 VRNSSYCLRIKISAKFVE   95 (101)
T ss_dssp             EEETTEEEEEEEEEEEEC
T ss_pred             EECCCCeEEEEEEEEEEe
Confidence            9775 4445567777765

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.17  E-value=1.3e-10  Score=80.68  Aligned_cols=96  Identities=16%  Similarity=0.202  Sum_probs=64.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC---CceeEEecCCCeeee---cC---------Cce--eeeEeeC-CeeeEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP---ASLNYWTNEKGDMII---TG---------DDY--EDSRLIN-GYSCHMTLK  239 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p---~p~~~W~~~~~~~~~---~~---------~~~--~~~~~~~-~~~~~s~L~  239 (314)
                      +..+...+.+.+|++++|.|.+...+   ...+.|++.+.....   ..         ..+  +.....+ ......+|.
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~   84 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNATGMEVGWYRSPFSRVVHLYRNGKDQDAEQAPEYRGRTELLKESIGEGKVALR   84 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCCTTSEEEEEEC--CCEEEEEETTEECGGGSCSTTTTSEEEECTTGGGTEEEEE
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCCCceEEEEeecCCcceEEEEEeccccccccccccceeEEEeeccccCCeEEEE
Confidence            34455667889999999999986433   346789986532211   00         011  1111111 122356999


Q ss_pred             EeecCCCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        240 IRSILSHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      |.+++.+|+|.|.|.+.+..+..+..+.|.|..+
T Consensus        85 I~~v~~~D~G~Y~C~v~~~~~~~~~~v~L~V~~P  118 (126)
T d1pkoa_          85 IQNVRFSDEGGYTCFFRDHSYQEEAAVELKVEDP  118 (126)
T ss_dssp             ESSCCGGGCEEEEEEEEETTEEEEEEEEEEEECT
T ss_pred             EEEEchhHCeEEEEEEEECCCEEEEEEEEEEeCC
Confidence            9999999999999999999888888888888764

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=99.16  E-value=2.3e-11  Score=81.50  Aligned_cols=73  Identities=15%  Similarity=0.233  Sum_probs=53.7

Q ss_pred             CCcceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      +.+.+.+.+|+++.|.|.+ .+.|.+.+.|++++....       ...+.+......   .++|.|.+++.+|+|.|+|.
T Consensus        10 ~~~~v~v~eG~~~~l~C~~~~~~p~~~v~W~k~g~~~~-------~~~~~~~~~~~~---~~~L~I~~v~~~D~G~Y~C~   79 (105)
T d1cs6a2          10 ERDPVKITEGWGVMFTCSPPPHYPALSYRWLLNEFPNF-------IPADGRRFVSQT---TGNLYIAKTEASDLGNYSCF   79 (105)
T ss_dssp             CCCCEEEETTSCEEECCCCCSEESCCEEEEEESSTTCB-------CCCCSSEEECTT---TCCEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEeCCCeEEEEEEccCCCCCCEEEEEEeecccc-------ccccceeeeecC---CCEEeecccccccCcEEEEE
Confidence            3456899999999999997 567889999999654321       122233333222   23699999999999999999


Q ss_pred             EecC
Q psy15734        106 INTV  109 (314)
Q Consensus       106 ~~~~  109 (314)
                      +.|.
T Consensus        80 a~N~   83 (105)
T d1cs6a2          80 ATSH   83 (105)
T ss_dssp             EEEE
T ss_pred             EEEC
Confidence            9764

>d1he7a_ b.1.1.4 (A:) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.13  E-value=7.1e-11  Score=79.30  Aligned_cols=87  Identities=13%  Similarity=0.061  Sum_probs=58.0

Q ss_pred             ceEEEcCCcEE---EEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEE--eC----CceeEEEEEeeecCCCCe
Q psy15734         30 NVTATVGKEAL---MACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSIT--FN----DHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        30 ~~~v~~g~~~~---l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~--~~----~~~~~~L~i~~~~~~d~G  100 (314)
                      .+.+.+|....   |.|.+.|.|.+.+.|++++ ..+.        .+.+....  ..    ......|.|.+++.+|+|
T Consensus         6 ~~~~~~g~~~~~~ci~~~v~G~P~P~v~W~~ng-~~l~--------~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~D~G   76 (107)
T d1he7a_           6 SVQLHTAVEMHHWCIPFSVDGQPAPSLRWLFNG-SVLN--------ETSFIFTEFLEPAANETVRHGCLRLNQPTHVNNG   76 (107)
T ss_dssp             CCCCCCCCCCCEEEEEEEECCSSCCEEEEEETT-EECC--------CCSSEEEEEECCCSSCCCEEEEEEEESCCGGGCE
T ss_pred             EeEECCCeEEEEEEEEEEEEEecCCeEEEEEee-eEcc--------CccceeeeeeeeeeeeeccceEEEECcccHHHCc
Confidence            44555555555   5558899999999999954 3322        12222111  11    112347999999999999


Q ss_pred             EEEEEEecC-CCcceeEEEEEEeCCc
Q psy15734        101 WYMCQINTV-PMTSQKGYLQVVVPPR  125 (314)
Q Consensus       101 ~Y~C~~~~~-~~~~~~~~l~v~~~p~  125 (314)
                      .|+|.+.|. |.....+.|.|..+|.
T Consensus        77 ~Y~C~A~N~~G~~~~~i~v~v~~~P~  102 (107)
T d1he7a_          77 NYTLLAANPFGQASASIMAAFMDNPF  102 (107)
T ss_dssp             EEEEEEEETTEEEEEEEEECCCSCTT
T ss_pred             EEEEEEEeCCCEEEEEEEEEEEcCCC
Confidence            999999876 5566677777777774

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.11  E-value=2.7e-11  Score=79.32  Aligned_cols=80  Identities=16%  Similarity=0.167  Sum_probs=54.3

Q ss_pred             cceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCc-------e--eeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        184 LEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDD-------Y--EDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~-------~--~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .+...+|++++|.|.+. .|.+.+.|++++..+......       +  +.....    ...+|.|.+++.+|+|.|+|+
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~~i~~~~~~~~~~~~~~~~~~~~~~----~~~sL~I~~l~~~DsG~Y~c~   78 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEVLWKKQKDKVAELENSEFRAFSSFKNRVYLDT----VSGSLTIYNLTSSDEDEYEME   78 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCEEEEETTEEEEEEETTEEEECGGGTTSEEECT----TTCCEEECSCCGGGCEEEEEE
T ss_pred             EEEEEECCCEEEEecCC-CCCcEEEEEEeccccceeeecceeeCCCccceEEEcC----CeeEEEEEecChhhCEEEEEE
Confidence            35678999999999864 588899999975443221111       0  111111    123899999999999999999


Q ss_pred             EeeCCCCceeEEEEEE
Q psy15734        255 AVNALGETDGFIKVYV  270 (314)
Q Consensus       255 a~n~~g~~~~~~~l~V  270 (314)
                      |.|..+..  .+.|+|
T Consensus        79 ~~n~~~t~--~~~l~V   92 (93)
T d1ccza1          79 SPNITDTM--KFFLYV   92 (93)
T ss_dssp             CTTCCSCE--EEEEEE
T ss_pred             EECCCcEE--EEEEEE
Confidence            98876644  455554

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.10  E-value=6.4e-11  Score=77.48  Aligned_cols=86  Identities=15%  Similarity=0.185  Sum_probs=56.2

Q ss_pred             cceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeee--c--CcCEEEEeCCceeEEEEEeeecCCCCeEEEE
Q psy15734         29 ANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVT--Q--NKRVSITFNDHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~--~--~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      +.+.+..|++|+|.|... .|...+.|++++. .+.........  .  ..+..+.   ..+++|.|.+++++|+|.|+|
T Consensus         3 ~~v~~~~G~sVtl~c~~~-~p~~~v~W~~~~~-~i~~~~~~~~~~~~~~~~~~~~~---~~~~sL~I~~l~~~DsG~Y~c   77 (93)
T d1ccza1           3 QQIYGVVYGNVTFHVPSN-VPLKEVLWKKQKD-KVAELENSEFRAFSSFKNRVYLD---TVSGSLTIYNLTSSDEDEYEM   77 (93)
T ss_dssp             EEEEEETTCCEEECCCCS-SCCSCEEEEETTE-EEEEEETTEEEECGGGTTSEEEC---TTTCCEEECSCCGGGCEEEEE
T ss_pred             cEEEEEECCCEEEEecCC-CCCcEEEEEEecc-ccceeeecceeeCCCccceEEEc---CCeeEEEEEecChhhCEEEEE
Confidence            357789999999999875 4777999999554 33222111111  1  1233332   223479999999999999999


Q ss_pred             EEecCCCcceeEEEEE
Q psy15734        105 QINTVPMTSQKGYLQV  120 (314)
Q Consensus       105 ~~~~~~~~~~~~~l~v  120 (314)
                      .+.+. ..+..+.|.|
T Consensus        78 ~~~n~-~~t~~~~l~V   92 (93)
T d1ccza1          78 ESPNI-TDTMKFFLYV   92 (93)
T ss_dssp             ECTTC-CSCEEEEEEE
T ss_pred             EEECC-CcEEEEEEEE
Confidence            98653 3344555555

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=99.07  E-value=8.4e-11  Score=77.41  Aligned_cols=83  Identities=13%  Similarity=0.111  Sum_probs=57.0

Q ss_pred             cceeecCccEEEEEEEe-e-cCCceeEEecCCCeeeecCCc-------eeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        184 LEGAFVSQTVELHCHTE-A-FPASLNYWTNEKGDMIITGDD-------YEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~-g-~p~p~~~W~~~~~~~~~~~~~-------~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .+...+|++++|.|... . .....|.|++++..+..-...       .+.....++     +|.|.+++.+|+|.|+|.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~~~i~~~~~~~~~~~~~~~~~~~~ng-----SL~I~nl~~~DsG~Y~c~   78 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGSTLVAEFKRKMKPFLKSGAFEILANG-----DLKIKNLTRDDSGTYNVT   78 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETTEEEEEEETTSCCEESSTTEEECTTS-----CEEESSCCGGGCEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccccceeEEccCCccccCCCeEEECCCc-----cEEEeCCCHHHCEEEEEE
Confidence            34567899999999642 2 233578999965433211111       111233444     899999999999999999


Q ss_pred             EeeCCCCc--eeEEEEEEE
Q psy15734        255 AVNALGET--DGFIKVYVN  271 (314)
Q Consensus       255 a~n~~g~~--~~~~~l~V~  271 (314)
                      +.+..|..  .+.+.|.|.
T Consensus        79 v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          79 VYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEETTCCEEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEEEEEEE
Confidence            99999987  567777765

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.7e-10  Score=75.50  Aligned_cols=76  Identities=11%  Similarity=0.072  Sum_probs=50.6

Q ss_pred             cCCcceEEEcCCcEEEEEEecC-C--CceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         26 EPVANVTATVGKEALMACVVEN-L--REYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~-~--~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .++....+.+|+.++|.|.+.+ .  +.+.+.|++ ++..+............       ......|.|...+.+|.|.|
T Consensus         7 i~~~p~~v~~G~~v~l~C~v~g~~p~p~~~i~W~~-~~~~i~~~~~~~~~~~~-------~~~~s~l~~~~~~~d~g~~y   78 (106)
T d1zxqa1           7 LTLQPTLVAVGKSFTIECRVPTVEPLDSLTLFLFR-GNETLHYETFGKAAPAP-------QEATATFNSTADREDGHRNF   78 (106)
T ss_dssp             EEEESSEECTTSEEEEEEEECSCBCGGGEEEEEEE-TTEEEEEEECCSSTTCT-------TCEEEEEEEECCGGGGGCEE
T ss_pred             ecCCCCEEeCCCEEEEEEEEeCcccCCCceEEEEc-CCEEeeecccceEeecc-------cceeEEEEEeeehhcCCcEE
Confidence            4566678899999999999976 3  456899999 54544332211111111       11223678888888888899


Q ss_pred             EEEEecC
Q psy15734        103 MCQINTV  109 (314)
Q Consensus       103 ~C~~~~~  109 (314)
                      +|.|.|.
T Consensus        79 tC~A~n~   85 (106)
T d1zxqa1          79 SCLAVLD   85 (106)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEec
Confidence            9999765

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.01  E-value=2.1e-10  Score=75.50  Aligned_cols=79  Identities=16%  Similarity=0.350  Sum_probs=53.8

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeee-----ecCcCEEEEeC--CceeEEEEEeeecCCCCeEE
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVV-----TQNKRVSITFN--DHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~-----~~~~~~~~~~~--~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .+...+|++++|+|.........+.|++.....+........     ....|+....+  ..++++|.|.+++.+|+|.|
T Consensus         3 ~V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y   82 (97)
T d2nxyb1           3 VVLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTY   82 (97)
T ss_dssp             EEEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEE
T ss_pred             EEEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEE
Confidence            467889999999999877677789999965543332221111     11234443322  22345799999999999999


Q ss_pred             EEEEec
Q psy15734        103 MCQINT  108 (314)
Q Consensus       103 ~C~~~~  108 (314)
                      .|.+.+
T Consensus        83 ~C~v~~   88 (97)
T d2nxyb1          83 ICEVED   88 (97)
T ss_dssp             EEEETT
T ss_pred             EEEEec
Confidence            999953

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.00  E-value=2.3e-11  Score=83.17  Aligned_cols=97  Identities=13%  Similarity=0.169  Sum_probs=63.8

Q ss_pred             CCCCCceecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCceeEEEeeeeeeecCcCEEEEe---CCceeEEEEEee
Q psy15734         18 KPDMPRFAEPVANVTATVGKEALMACVVENL-REYKVAWVKMITQTILSIHHKVVTQNKRVSITF---NDHRSWFLHLRD   93 (314)
Q Consensus        18 ~~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~~~L~i~~   93 (314)
                      +..+|.|. .+..+.+.+|+++.|.|.+.+. +.+.+.|++++. .+...      ...++.+..   .+.....|.|.+
T Consensus         4 V~~Pp~i~-~~~~~~~~~G~~~~l~C~v~~~~p~~~v~W~~~~~-~i~~~------~~~~~~~~~~~~~~~~~s~L~I~~   75 (115)
T d2crya1           4 VNGPPIIS-STQTQHALHGEKGQIKCFIRSTPPPDRIAWSWKEN-VLESG------TSGRYTVETISTEEGVISTLTISN   75 (115)
T ss_dssp             CCSSCCEE-EECCCCCCTTSCCCCCEEECCSSCCSEEEEESSSC-EECSE------EETTEEEEEEEETTEEEEEEECTT
T ss_pred             EecCCEEe-cCCCEEEecCCEEEEEEEeecCCCeeEEEEeeeee-eEeee------eeeeEeeeeeccccCcEEEEEEec
Confidence            44566654 5566778999999999999885 556899998554 33211      112222221   111223799999


Q ss_pred             ecCCC-CeEEEEEEecC-CCcceeEEEEEEe
Q psy15734         94 VQETD-RGWYMCQINTV-PMTSQKGYLQVVV  122 (314)
Q Consensus        94 ~~~~d-~G~Y~C~~~~~-~~~~~~~~l~v~~  122 (314)
                      ++.+| +|.|+|.+.|. |..+..+.|.|..
T Consensus        76 v~~~D~~G~Y~C~A~N~~G~~~~~~~L~V~~  106 (115)
T d2crya1          76 IVRADFQTIYNCTAWNSFGSDTEIIRLKEQG  106 (115)
T ss_dssp             CCHHHHHSCEEEEEECSSCEEEEEECCCCSC
T ss_pred             cchhcCCeEEEEEEEECCCeEEEEEEEEEEC
Confidence            99999 79999999876 5555555666543

>d1iray2 b.1.1.4 (Y:102-204) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.99  E-value=9.4e-10  Score=72.78  Aligned_cols=67  Identities=27%  Similarity=0.372  Sum_probs=48.8

Q ss_pred             ceEEEcCCcEEEEE------EecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEE
Q psy15734         30 NVTATVGKEALMAC------VVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        30 ~~~v~~g~~~~l~C------~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      ...+..|....|.|      .+.+.+.+.+.|+++ +..+.       ..+.++.. .++    .|.|.+++.+|+|.|+
T Consensus         8 ~q~~~~g~~~~l~Cp~~~~~~~~~~p~P~i~W~kd-g~~l~-------~~~~~~~~-~~~----~L~I~~v~~~D~G~Y~   74 (103)
T d1iray2           8 KQKLPVAGDGGLVCPYMEFFKNENNELPKLQWYKD-CKPLL-------LDNIHFSG-VKD----RLIVMNVAEKHRGNYT   74 (103)
T ss_dssp             EEEEESSSCEEEECTTGGGGCBTTTBCCCCEEEET-TEECC-------CCSSSEEE-ETT----EEEESSCCGGGCEEEE
T ss_pred             EEEEecCCCEEEEcCCccccccCCCCCCEEEEEEC-Ccccc-------CCCcEEEe-cCC----EEEEcccccccCcEEE
Confidence            35688999999999      456778899999994 44331       11223222 222    7999999999999999


Q ss_pred             EEEecC
Q psy15734        104 CQINTV  109 (314)
Q Consensus       104 C~~~~~  109 (314)
                      |.+.+.
T Consensus        75 C~a~n~   80 (103)
T d1iray2          75 CHASYT   80 (103)
T ss_dssp             EEEEEE
T ss_pred             EEEEEC
Confidence            999653

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.99  E-value=8.7e-09  Score=69.50  Aligned_cols=85  Identities=18%  Similarity=0.338  Sum_probs=59.8

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCc-e---eEEEe--eeeeeecCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMIT-Q---TILSI--HHKVVTQNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~-~---~~~~~--~~~~~~~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ++..|..+.+.+|++++|.|.+.+ .....+.|||... .   .+...  .......+.|+.+..... ..+.|.|.+++
T Consensus         2 vtqsP~~l~v~~G~~vtl~C~~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~~~   81 (114)
T d3bp5a1           2 LTFYPAWLTVSEGANATFTCSLSNWSEDLMLNWNRLSPSNQTEKQAAFSNGLSQPVQDARFQIIQLPNRHDFHMNILDTR   81 (114)
T ss_dssp             EEEESSEEEEETTCCEEEEEEESCCCTTCEEEEEEECTTCCEEEEEEEETTEEEESSCTTEEEEECTTSSEEEEEESSCC
T ss_pred             ceECCCeEEECCCCCEEEEEEECCCCCcceEEEEEECCCCCCeeeEEeeeccccccccCcceEEEeCCCCEEEEEECccC
Confidence            345678899999999999999854 3456799998532 1   12211  111223456777776533 45689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsg~YyCa~~~   94 (114)
T d3bp5a1          82 RNDSGIYLCGAIS   94 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCCeEEEEEEEe
Confidence            9999999999853

>d1hnga1 b.1.1.1 (A:2-99) CD2, first domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2, first domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.98  E-value=1.3e-09  Score=71.57  Aligned_cols=87  Identities=14%  Similarity=0.156  Sum_probs=56.5

Q ss_pred             ceEEEcCCcEEEEEEe-cC-CCceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         30 NVTATVGKEALMACVV-EN-LREYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~-~~-~~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      .+....|++|+|+|.. .. .....|.|++++ ..+.....  .....+.+..+..+    ++|.|.+++.+|+|.|+|.
T Consensus         4 tV~G~~G~sV~L~~~~~~~~~~i~~I~W~~~~-~~i~~~~~~~~~~~~~~~~~~~~n----gSL~I~nl~~~DsG~Y~c~   78 (98)
T d1hnga1           4 TVWGALGHGINLNIPNFQMTDDIDEVRWERGS-TLVAEFKRKMKPFLKSGAFEILAN----GDLKIKNLTRDDSGTYNVT   78 (98)
T ss_dssp             EEEEETTSCEEECCTTCCCCTTEEEEEEEETT-EEEEEEETTSCCEESSTTEEECTT----SCEEESSCCGGGCEEEEEE
T ss_pred             EEEEecCCCEEEECCCCCCccchheeeeeccc-cceeEEccCCccccCCCeEEECCC----ccEEEeCCCHHHCEEEEEE
Confidence            4677889999999964 22 344689999954 44432211  11223344444332    4799999999999999999


Q ss_pred             EecC-CCc--ceeEEEEEE
Q psy15734        106 INTV-PMT--SQKGYLQVV  121 (314)
Q Consensus       106 ~~~~-~~~--~~~~~l~v~  121 (314)
                      +.+. +..  ...+.|.|+
T Consensus        79 v~~~~g~~~~~~~~~L~V~   97 (98)
T d1hnga1          79 VYSTNGTRILNKALDLRIL   97 (98)
T ss_dssp             EEETTCCEEEEEEEEEEEE
T ss_pred             EEeCCCCEEEEEEEEEEEE
Confidence            9654 333  455566665

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.96  E-value=4.5e-09  Score=71.05  Aligned_cols=86  Identities=19%  Similarity=0.287  Sum_probs=59.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEE-eeeeeeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILS-IHHKVVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~-~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      +...|..+.+.+|++++|.|.........+.||+...    ..+.. ..........++..... ....++|.|.+++++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~sL~i~~~~~~   82 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATLDADTKQSSLHITASQLS   82 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECBCSSSSEEEEEECSCCGG
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceeecCcccccccEEcccChh
Confidence            3455788999999999999998766666899998642    12221 11111223346655543 335678999999999


Q ss_pred             CCeEEEEEEecC
Q psy15734         98 DRGWYMCQINTV  109 (314)
Q Consensus        98 d~G~Y~C~~~~~  109 (314)
                      |+|.|.|.+...
T Consensus        83 Dsg~Y~Ca~~~~   94 (114)
T d2cdea1          83 DSASYICVVSDR   94 (114)
T ss_dssp             GCSEEEEEEECS
T ss_pred             hCcccceeeecC
Confidence            999999998653

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.96  E-value=9.7e-10  Score=75.28  Aligned_cols=86  Identities=15%  Similarity=0.326  Sum_probs=60.4

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ce------eEEEeeee----ee----ecCcCEEEEeCCcee
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQ------TILSIHHK----VV----TQNKRVSITFNDHRS   86 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~------~~~~~~~~----~~----~~~~~~~~~~~~~~~   86 (314)
                      |.+...|+.+.+.+|++++|.|.+.+.....+.|||.. +.      .+......    ..    ....++.........
T Consensus         2 ~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~~~   81 (122)
T d1nezg_           2 PELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTNNK   81 (122)
T ss_dssp             CEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETTTE
T ss_pred             CceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCCCE
Confidence            66777788999999999999999977667789999842 11      11111100    01    112355555544556


Q ss_pred             EEEEEeeecCCCCeEEEEEEe
Q psy15734         87 WFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        87 ~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      +.|.|.+++.+|+|.|.|.+.
T Consensus        82 ~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          82 YVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             EEEEESSCCGGGCEEEEEEEE
T ss_pred             eEEEEcccccCCCEEEEeeEe
Confidence            789999999999999999874

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.94  E-value=4.8e-10  Score=74.93  Aligned_cols=81  Identities=20%  Similarity=0.243  Sum_probs=54.6

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCee----ee----------cCCce--eeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDM----II----------TGDDY--EDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~----~~----------~~~~~--~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      ..+.+|+++.|.|.........+.|+|+....    +.          ..+.|  +.....++     +|.|.+++.+|+
T Consensus         9 ~~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~ng-----SL~I~~v~~~D~   83 (107)
T d1l6za1           9 PQVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSNG-----SLLFQMITMKDM   83 (107)
T ss_dssp             SSCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTTS-----CEEECSCCGGGC
T ss_pred             CcccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEcccc-----cEEEcCCCchhC
Confidence            45789999999997544445678899853211    10          01111  22334455     899999999999


Q ss_pred             eEEEEEEeeCCC-CceeEEEEEE
Q psy15734        249 GSYRCVAVNALG-ETDGFIKVYV  270 (314)
Q Consensus       249 G~Y~C~a~n~~g-~~~~~~~l~V  270 (314)
                      |.|+|.+.+..+ .....+.|+|
T Consensus        84 G~Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          84 GVYTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEEEECCCCEEEEEEEEEE
Confidence            999999988764 4556677665

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.93  E-value=3.6e-09  Score=71.97  Aligned_cols=97  Identities=16%  Similarity=0.252  Sum_probs=60.1

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC---CceEEEEEEcCcee---EE-Eee-eeeeecCcCEEEEe-CCceeEEEEEeeecC
Q psy15734         26 EPVANVTATVGKEALMACVVENL---REYKVAWVKMITQT---IL-SIH-HKVVTQNKRVSITF-NDHRSWFLHLRDVQE   96 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~~~~---~~-~~~-~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~   96 (314)
                      ..|+.+.+.+|++|+|+|.....   ....+.|+|.....   +. ... .......+++.+.. .....++|.|.++++
T Consensus         4 t~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~l~~   83 (116)
T d1xeda_           4 FGPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLTNFPENGTFVVNIAQLSQ   83 (116)
T ss_dssp             BCCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEEEETTTTEEEEEECSCCG
T ss_pred             cCCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEeeeCCCCEEEEEEhhhCc
Confidence            45678999999999999998542   23568899853211   11 111 11112234555543 344567899999999


Q ss_pred             CCCeEEEEEEecCC-CcceeEEEEEEe
Q psy15734         97 TDRGWYMCQINTVP-MTSQKGYLQVVV  122 (314)
Q Consensus        97 ~d~G~Y~C~~~~~~-~~~~~~~l~v~~  122 (314)
                      +|+|.|.|.+...+ .....+.|.|.+
T Consensus        84 ~DsG~Y~C~v~~~~~~~~~~v~L~V~~  110 (116)
T d1xeda_          84 DDSGRYKCGLGINSRGLSFDVSLEVLE  110 (116)
T ss_dssp             GGCEEEEEEESCGGGCCEEEEEEEEEC
T ss_pred             CCCEEEEEEEEcCCCCceEeEEEEEEC
Confidence            99999999985332 223345566654

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.92  E-value=5.3e-09  Score=70.55  Aligned_cols=85  Identities=15%  Similarity=0.339  Sum_probs=57.8

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC--ce--eEEEe-eeeeeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI--TQ--TILSI-HHKVVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~--~~--~~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      +...|..+.+.+|++++|.|..++.....+.|||..  ..  .+... .........++..... ......|.|.+++.+
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   82 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSSGRSTLYIAASQPG   82 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCCCEEEeeeecCCCC
Confidence            345678899999999999999987666789999853  11  11111 1111122334443332 345668999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        83 Dsg~YyCa~~~   93 (113)
T d2bnqd1          83 DSATYLCAVRP   93 (113)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCcEEeEeEec
Confidence            99999999853

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=98.92  E-value=4.7e-10  Score=75.52  Aligned_cols=75  Identities=17%  Similarity=0.293  Sum_probs=51.1

Q ss_pred             ceEEEcCCcEEEEEEe-cCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe---EEEEE
Q psy15734         30 NVTATVGKEALMACVV-ENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG---WYMCQ  105 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~-~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G---~Y~C~  105 (314)
                      ..++.+|+++.|.|.+ .|.|.+.+.|++++.......  .......++....+    ++|.|.+++.+|+|   .|.|.
T Consensus        11 ~~t~~EG~~~~L~C~v~~G~P~p~v~W~k~~~~~~~~~--~~~~~~~~~~~~~~----~~L~i~~v~~~D~gd~g~Y~C~   84 (111)
T d1biha2          11 EKTPIEGRPFQLDCVLPNAYPKPLITWKKRLSGADPNA--DVTDFDRRITAGPD----GNLYFTIVTKEDVSDIYKYVCT   84 (111)
T ss_dssp             EECCBTTEEEEECCCCCEEESCCEEEEEEEETTSCGGG--CCCCCCTTEEECTT----SCEEEEEECGGGCCSSEEEEEE
T ss_pred             cccccCCCeEEEEEEcccCCCCCEEEEEeCCccccccc--cceeeeeeeccccc----cccEEeeeEeeccCCceEEEEE
Confidence            4457799999999997 789999999999654321110  00111123333222    26999999999877   69999


Q ss_pred             EecCC
Q psy15734        106 INTVP  110 (314)
Q Consensus       106 ~~~~~  110 (314)
                      +.|..
T Consensus        85 A~N~~   89 (111)
T d1biha2          85 AKNAA   89 (111)
T ss_dssp             EECTT
T ss_pred             EEeCC
Confidence            98863

>d1l6za1 b.1.1.1 (A:1-107) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.89  E-value=6.2e-10  Score=74.36  Aligned_cols=85  Identities=19%  Similarity=0.108  Sum_probs=54.1

Q ss_pred             EEEcCCcEEEEEEecCCCceEEEEEEcCce----eEEEeeee--e----eecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         32 TATVGKEALMACVVENLREYKVAWVKMITQ----TILSIHHK--V----VTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        32 ~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~----~~~~~~~~--~----~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      .+.+|++|.|+|.........+.|+|....    .+......  .    ....+|..+..+    ++|.|.+++.+|+|.
T Consensus        10 ~v~~G~~V~L~c~~~p~~~~~~~W~k~~~~~~~~~i~~y~~~~~~~~~~~~y~gR~~l~~n----gSL~I~~v~~~D~G~   85 (107)
T d1l6za1          10 QVAEDNNVLLLVHNLPLALGAFAWYKGNTTAIDKEIARFVPNSNMNFTGQAYSGREIIYSN----GSLLFQMITMKDMGV   85 (107)
T ss_dssp             SCCTTCCEEEEEESCCTTCSEEEEEESSCCSGGGEEEEECSTTCCEECCSSCCSSEEECTT----SCEEECSCCGGGCEE
T ss_pred             cccCCCCEEEEecCCCCCceEEEEEeCcccCCceeeEEEEcCCCccccCCcceeEEEEccc----ccEEEcCCCchhCEE
Confidence            367999999999865545679999995321    11111000  0    011346666543    379999999999999


Q ss_pred             EEEEEecCC--CcceeEEEEE
Q psy15734        102 YMCQINTVP--MTSQKGYLQV  120 (314)
Q Consensus       102 Y~C~~~~~~--~~~~~~~l~v  120 (314)
                      |+|.+.+..  .....+.|.|
T Consensus        86 Y~c~v~~~~~~~~~~~v~L~V  106 (107)
T d1l6za1          86 YTLDMTDENYRRTQATVRFHV  106 (107)
T ss_dssp             EEEEEEETTEEECCCCEEECC
T ss_pred             EEEEEEECCCCEEEEEEEEEE
Confidence            999996543  2233445544

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.88  E-value=1.7e-08  Score=67.50  Aligned_cols=82  Identities=18%  Similarity=0.319  Sum_probs=54.2

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEe-eeeeeecCcCEEEEe-CCceeEEEEEeeecCCCC
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSI-HHKVVTQNKRVSITF-NDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~-~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~   99 (314)
                      ++.+.+.+|++++|+|.....  ....+.|+|... ..   +... ........+|+.+.. ...+.++|.|.+++++|+
T Consensus         3 ~~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~l~~~Ds   82 (108)
T d1hkfa_           3 AQVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIWDDPDAGFFTVTMTDLREEDS   82 (108)
T ss_dssp             CEEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeeeeeCCCCEEEEEEhhhCCCCC
Confidence            456889999999999997542  334678998532 11   1111 111122235665554 344567899999999999


Q ss_pred             eEEEEEEecC
Q psy15734        100 GWYMCQINTV  109 (314)
Q Consensus       100 G~Y~C~~~~~  109 (314)
                      |.|.|.+...
T Consensus        83 G~Y~C~v~~~   92 (108)
T d1hkfa_          83 GHYWCRIYRP   92 (108)
T ss_dssp             EEEEEEEECT
T ss_pred             EEEEEEEecC
Confidence            9999998643

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.87  E-value=2.1e-08  Score=67.83  Aligned_cols=86  Identities=14%  Similarity=0.306  Sum_probs=58.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcC--c-ee-EEEeeeee----eecCcCEEEEeC-CceeEEEEEee
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL-REYKVAWVKMI--T-QT-ILSIHHKV----VTQNKRVSITFN-DHRSWFLHLRD   93 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~--~-~~-~~~~~~~~----~~~~~~~~~~~~-~~~~~~L~i~~   93 (314)
                      +...+..+.+.+|++++|.|..... ....+.|||..  . .. +.......    ....+|+....+ ....++|.|.+
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~I~~   82 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILTQKAFHLVISP   82 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGGGTEEEEEESS
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCceeEEeeeecC
Confidence            4556788899999999999998543 45689999842  1 11 11111111    112347766644 33456899999


Q ss_pred             ecCCCCeEEEEEEecC
Q psy15734         94 VQETDRGWYMCQINTV  109 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~  109 (314)
                      ++.+|+|.|.|.+...
T Consensus        83 ~~~~Dsg~YyCa~~~~   98 (116)
T d1tvda_          83 VRTEDSATYYCAFTLP   98 (116)
T ss_dssp             CCGGGCEEEEEEEECT
T ss_pred             ccccccccceeeEecC
Confidence            9999999999998543

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.87  E-value=2.5e-08  Score=64.62  Aligned_cols=73  Identities=22%  Similarity=0.389  Sum_probs=51.3

Q ss_pred             CCcEEEEEEecCCCceEEEEEEcCc----eeEEEeeeeeeecCcCEEEEe-CCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         36 GKEALMACVVENLREYKVAWVKMIT----QTILSIHHKVVTQNKRVSITF-NDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        36 g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      |++++|.|.........+.|||...    +.+...........+++.... ......+|.|.+++++|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKASQYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTTTEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCCCEEeEEeeccccCcCccceeeEec
Confidence            7899999998776677899998532    222222222233455776654 334456899999999999999999853

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.86  E-value=1.6e-08  Score=67.69  Aligned_cols=80  Identities=23%  Similarity=0.319  Sum_probs=51.7

Q ss_pred             CcceEEEcCCcEEEEEEecCC-CceEEEEEEcC-ce---eEEEeeeeeeecCcCEEEEe-CCceeEEEEEeeecCCCCeE
Q psy15734         28 VANVTATVGKEALMACVVENL-REYKVAWVKMI-TQ---TILSIHHKVVTQNKRVSITF-NDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~-~~---~~~~~~~~~~~~~~~~~~~~-~~~~~~~L~i~~~~~~d~G~  101 (314)
                      |..+.+.+|++++|.|..... ....+.|||.. +.   .+.... .......+..... .......|.|.+++.+|+|.
T Consensus         5 P~svsv~~G~~vtl~C~~s~~~~~~~l~WYrq~~g~~~~~i~~~~-~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~Dsa~   83 (110)
T d2esvd1           5 PPSMDCAEGRAANLPCNHSTISGNEYVYWYRQIHSQGPQYIIHGL-KNNETNEMASLIITEDRKSSTLILPHATLRDTAV   83 (110)
T ss_dssp             CSEEEEETTSCEEEEEECTTCCTTEEEEEEEECTTSCCEEEEEES-SSCEECSSCEEEECTTCSEEEEEESSCCGGGCEE
T ss_pred             CCEEEECCCCCEEEEEEEcCCCCCCeEEEEEECCCCccEEeeeee-ceecccccceeeecccCCeeeehhcccccCCceE
Confidence            447899999999999998653 44568999853 11   122111 1111122222222 23345689999999999999


Q ss_pred             EEEEEec
Q psy15734        102 YMCQINT  108 (314)
Q Consensus       102 Y~C~~~~  108 (314)
                      |.|.+..
T Consensus        84 YyCa~~~   90 (110)
T d2esvd1          84 YYCIVVR   90 (110)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEeC
Confidence            9999753

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.86  E-value=6.9e-09  Score=70.87  Aligned_cols=97  Identities=13%  Similarity=0.253  Sum_probs=59.4

Q ss_pred             ecCCcceEEEcCCcEEEEEEecC----CCceEEEEEEcCce-----eEEEeee--eeee----cCcCEEEEeC-CceeEE
Q psy15734         25 AEPVANVTATVGKEALMACVVEN----LREYKVAWVKMITQ-----TILSIHH--KVVT----QNKRVSITFN-DHRSWF   88 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~----~~~~~v~W~~~~~~-----~~~~~~~--~~~~----~~~~~~~~~~-~~~~~~   88 (314)
                      +..+..+.+..|++++|+|.+..    .....+.|++....     .+.....  ....    ..+|+.+..+ ..+..+
T Consensus         3 v~~p~~v~a~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~s   82 (119)
T d1neua_           3 VYTDREVYGAVGSQVTLHCSFWSSEWVSDDISFTWRYQPEGGRDAISIFHYAKGQPYIDEVGTFKERIQWVGDPSWKDGS   82 (119)
T ss_dssp             EECCSEEEEETTSCEEECCEEECSSCCCSCCEEEEEEEETTCCCCEEEEEEETTEEEECSSSTTTTCEEECCBGGGTBCC
T ss_pred             EcCCCeEEEeeCCCEEEEEEEEecCCCCccEEEEEEEecccCCceeEEEEEeecccccccCccceeEEEEEEECCCCEEE
Confidence            45677899999999999999742    23458999874321     1111110  1111    1245655433 223457


Q ss_pred             EEEeeecCCCCeEEEEEEecCC---CcceeEEEEEE
Q psy15734         89 LHLRDVQETDRGWYMCQINTVP---MTSQKGYLQVV  121 (314)
Q Consensus        89 L~i~~~~~~d~G~Y~C~~~~~~---~~~~~~~l~v~  121 (314)
                      |.|.+++.+|+|.|.|.+.+..   .....+.|.|.
T Consensus        83 L~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          83 IVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             EEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            9999999999999999996532   22333455553

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.86  E-value=1.4e-08  Score=69.00  Aligned_cols=84  Identities=14%  Similarity=0.301  Sum_probs=59.0

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeee--e-ee---ecCcCEEEEeCCceeEEEEEee
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHH--K-VV---TQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~--~-~~---~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      +..+|..+.+.+|++++|.|...+.....+.|||... ..   +.....  . ..   ....++.........+.|.|.+
T Consensus         4 v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~   83 (118)
T d2ij0c1           4 VSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLINHASPTLSTLTVTS   83 (118)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEEECSSSEEEEEECS
T ss_pred             EEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceeeccccccccccccc
Confidence            4556778899999999999998776667899999632 11   111100  0 11   1234666665555566899999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++++|+|.|.|.+.
T Consensus        84 ~~~~Dsa~YyCa~~   97 (118)
T d2ij0c1          84 AHPEDSGFYVCSAL   97 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccCceEEEEEe
Confidence            99999999999974

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.86  E-value=8.4e-10  Score=76.18  Aligned_cols=94  Identities=20%  Similarity=0.252  Sum_probs=60.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCC----ceeEEecCCCee-------ee-c--------CCce--eeeEeeC-Ceee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPA----SLNYWTNEKGDM-------II-T--------GDDY--EDSRLIN-GYSC  234 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~-------~~-~--------~~~~--~~~~~~~-~~~~  234 (314)
                      +..+...+.+.+|+++.|.|.....+.    ..+.|++.....       +. .        ...+  +.....+ ....
T Consensus         7 Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~   86 (124)
T d1eaja_           7 ITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKSG   86 (124)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGGT
T ss_pred             EEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCCC
Confidence            334445577889999999999876543    357798632210       00 0        0010  1111111 0112


Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCCCceeEEEEEEE
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALGETDGFIKVYVN  271 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~~~l~V~  271 (314)
                      ...|+|.+++.+|+|.|.|.+.+..+.....+.|.|.
T Consensus        87 ~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          87 DASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             BCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             EEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            3489999999999999999999998888888888775

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.85  E-value=1.3e-08  Score=68.13  Aligned_cols=94  Identities=10%  Similarity=0.150  Sum_probs=57.4

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEee-cCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEA-FPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      |.|..+.   .+.+|+.++|.|.+.+ .|.+  .+.|++++ ..+............+.+...+.|.+.....+|...|+
T Consensus         5 P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~g~-~~~~~~~~~~~~~~~~~~~~~s~l~~~~~~~D~g~~lt   80 (109)
T d1vcaa1           5 PEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLKGD-HLMKSQEFLEDADRKSLETKSLEVTFTPVIEDIGKVLV   80 (109)
T ss_dssp             CEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEETT-EEEEEEECCSCCSSCCCEEEEEEEEECCCGGGTTCEEE
T ss_pred             CEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEeccC-ceeeccccccccccCCcceeeEEEEccCChHHCCcEEE
Confidence            4554433   4789999999999976 6644  68899864 33322211111122334556677888755555555899


Q ss_pred             EEEeeCCCCc-------eeEEEEEEEec
Q psy15734        253 CVAVNALGET-------DGFIKVYVNLV  273 (314)
Q Consensus       253 C~a~n~~g~~-------~~~~~l~V~~~  273 (314)
                      |+|+|..+..       .....|.|...
T Consensus        81 C~a~~~~~~~~~~~~~~~t~~~L~V~~~  108 (109)
T d1vcaa1          81 CRAKLHIDEMDSVPTVRQAVKELQVYIS  108 (109)
T ss_dssp             EEEEECSCCCTTSCSEEEEEEECCEECC
T ss_pred             EEEEcCcCCccccccccceeEEeEEEeC
Confidence            9999986543       22344666544

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.84  E-value=9.3e-09  Score=68.53  Aligned_cols=83  Identities=16%  Similarity=0.264  Sum_probs=56.3

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee---EEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT---ILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++|+|.|.........+.||+... ..   +..... .......++...... ....|.|.+++.+|
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~D   82 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSGSA-TDFTLTISSVQADD   82 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeeccC-CeeecEEHhheecC
Confidence            3456788999999999999998765555799998531 11   111111 111123456555433 35689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 Sa~YyCa~~   91 (107)
T d1kcvl1          83 DADYYCGQS   91 (107)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEEec
Confidence            999999874

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.83  E-value=9.8e-09  Score=68.25  Aligned_cols=83  Identities=16%  Similarity=0.275  Sum_probs=56.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-ee--EEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QT--ILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|...+.....+.||+... ..  +.....  .......++.....+ ....|.|.+++.+|
T Consensus         4 ~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~~D   82 (107)
T d1ospl1           4 MSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSGSDSG-KDYTLSITSLQTED   82 (107)
T ss_dssp             EECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-SSEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccceecCC-CeEEeEEccccccc
Confidence            3456778999999999999998765545799999632 11  111111  111223467665543 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (107)
T d1ospl1          83 VATYFCQQY   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEEeec
Confidence            999999874

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.82  E-value=5.3e-09  Score=72.02  Aligned_cols=99  Identities=21%  Similarity=0.374  Sum_probs=60.9

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCC----CceEEEEEEcCcee------EEEee-eeee-----ecCcCEEEEeCCc--
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENL----REYKVAWVKMITQT------ILSIH-HKVV-----TQNKRVSITFNDH--   84 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~~~------~~~~~-~~~~-----~~~~~~~~~~~~~--   84 (314)
                      .+..|...+.+.+|++++|+|.+...    ....+.|++.....      +.... ....     ...+|..+.....  
T Consensus         6 ~Vt~p~~~v~~~~G~~v~L~C~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~   85 (124)
T d1eaja_           6 SITTPEEMIEKAKGETAYLPCKFTLSPEDQGPLDIEWLISPADNQKVDQVIILYSGDKIYDDYYPDLKGRVHFTSNDLKS   85 (124)
T ss_dssp             EESSSEEEEEEETTSCEEECCBEECCTTCCSCEEEEEEEEETTSSCCSEEEEEEETTEEECTTSSTTTTTEEECCSCGGG
T ss_pred             EEEccCceEEEECCCcEEEeEEEecccCCCCcEEEEEEEeCCCCcceeEEEEEEeCCccccccCcccccceEEEccCCCC
Confidence            34455567899999999999998532    33679999742211      11111 0111     1124555544322  


Q ss_pred             eeEEEEEeeecCCCCeEEEEEEecCC-CcceeEEEEEE
Q psy15734         85 RSWFLHLRDVQETDRGWYMCQINTVP-MTSQKGYLQVV  121 (314)
Q Consensus        85 ~~~~L~i~~~~~~d~G~Y~C~~~~~~-~~~~~~~l~v~  121 (314)
                      ...+|+|.+++.+|+|.|.|.+.+.. .....+.|.|.
T Consensus        86 ~~~sL~I~~v~~~D~G~Y~C~v~~~~~~~~~~~~L~V~  123 (124)
T d1eaja_          86 GDASINVTNLQLSDIGTYQCKVKKAPGVANKKIHLVVL  123 (124)
T ss_dssp             TBCCEEECSCCGGGCEEEEEEEEETTEEEEEEEEEEEE
T ss_pred             CEEEEEEcccEEccCEEEEEEEEECCCeEEeEEEEEEE
Confidence            34579999999999999999997543 33344455554

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.81  E-value=7.4e-09  Score=68.67  Aligned_cols=82  Identities=16%  Similarity=0.249  Sum_probs=55.4

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeE---EEe-eeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTI---LSI-HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~---~~~-~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      ...|..+.+.+|++++|.|.........+.|||.. +..+   ... .........++...... ..+.|.|.+++++|+
T Consensus         5 tQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~Ds   83 (107)
T d1c5cl1           5 TQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSRSG-SDYSLTISSLESEDF   83 (107)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGGC
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecccC-CEEEEEEhhhcccCC
Confidence            45577888999999999999876555679999853 2221   111 11111123355554433 346899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|.+.
T Consensus        84 a~YyCa~~   91 (107)
T d1c5cl1          84 ADYYCLQY   91 (107)
T ss_dssp             SEEEEEEC
T ss_pred             eEEEEecC
Confidence            99999874

>d2nxyb1 b.1.1.1 (B:1001-1097) CD4 V-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD4 V-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.81  E-value=3.2e-09  Score=69.59  Aligned_cols=82  Identities=16%  Similarity=0.182  Sum_probs=52.3

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCCeeeecCC---------ce--eeeEeeCC-eeeEEEEEEeecCCCCCeEEE
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGD---------DY--EDSRLING-YSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~---------~~--~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +...+|++++|.|.........+.|++.+........         .+  +.....+. .....+|.|.+++.+|+|.|.
T Consensus         4 V~~~~G~svtL~C~~s~~~~~~~~W~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~sL~I~~l~~~DsG~Y~   83 (97)
T d2nxyb1           4 VLGKKGDTVELTCTASQKKSIQFHWKNSNQIKILGNQGSFLTKGPSKLNDRADSRRSLWDQGNFPLIIKNLKIEDSDTYI   83 (97)
T ss_dssp             EEEETTSCEEECCBCSSSSCCCEEEEETTCCEEEEEETTEEEECSSTTGGGEECCGGGGGGTBCCEEECSCCGGGCEEEE
T ss_pred             EEEEcCCcEEEEEEEecCCCceEEEEEeCCceeeeecceeeeecCceeccceEEEeccCCCCEEEEEECCCChHHCEEEE
Confidence            4567899999999988777788999986543322111         00  00000000 112347999999999999999


Q ss_pred             EEEeeCCCCceeEEEEEE
Q psy15734        253 CVAVNALGETDGFIKVYV  270 (314)
Q Consensus       253 C~a~n~~g~~~~~~~l~V  270 (314)
                      |.+.+.    ...+.|.|
T Consensus        84 C~v~~~----~~~v~L~V   97 (97)
T d2nxyb1          84 CEVEDQ----KEEVQLLV   97 (97)
T ss_dssp             EEETTE----EEEEEEEE
T ss_pred             EEEecC----CeEEEEEC
Confidence            999653    34555544

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.81  E-value=1.8e-08  Score=67.54  Aligned_cols=80  Identities=16%  Similarity=0.249  Sum_probs=53.2

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCce---eEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMITQ---TILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~---~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +..+.+.+|++++|.|...+.  ....+.||+....   .++....  .......++....+. ....|.|.+++.+|++
T Consensus         7 ~ps~~v~~G~svtL~C~~s~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~v~~~DsA   85 (114)
T d2rhea_           7 PPSASGTPGQRVTISCTGSATDIGSNSVIWYQQVPGKAPKLLIYYNDLLPSGVSDRFSASKSG-TSASLAISGLESEDEA   85 (114)
T ss_dssp             CSEEEECTTCCEEEEEECCTTTTTTSCEEEEECCTTSCCEEEEBTTTBCCTTCCTTEEEEEET-TEEEEEESSCCGGGCE
T ss_pred             CCcEEeCCCCCEEEEEEECCccccCCcccceeeecccceEEEEEEeeeeccCCCCcceecCCC-CeeeeEecccCcccCc
Confidence            336899999999999998653  3567999986421   1111110  011122356555443 3458999999999999


Q ss_pred             EEEEEEec
Q psy15734        101 WYMCQINT  108 (314)
Q Consensus       101 ~Y~C~~~~  108 (314)
                      .|.|....
T Consensus        86 ~YyCA~~~   93 (114)
T d2rhea_          86 DYYCAAWN   93 (114)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEeecC
Confidence            99999753

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.80  E-value=1.2e-08  Score=67.74  Aligned_cols=79  Identities=15%  Similarity=0.272  Sum_probs=54.2

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |..+.+.+|++++|.|...+.....+.|||...    +.+..... .......++....++. ...|.|.+++++|+|.|
T Consensus         7 p~s~~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~~-~~~L~I~~~~~~Dsa~Y   85 (106)
T d1lk3l1           7 PPALTVSPGEKLTISCKASESVTSRMHWYQQKPGQQPKLLIYKASNLASGVPARFSGSGSGT-DFTLTIDPVEADDTAIY   85 (106)
T ss_dssp             CSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEETT-EEEEEESSCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCccEEEEecCCCCCcEEEEEecccccCCcCCceeeecCCC-EEEeEECCcChhhCCCc
Confidence            446899999999999999765556799998632    11211111 1111234666665443 45899999999999999


Q ss_pred             EEEEe
Q psy15734        103 MCQIN  107 (314)
Q Consensus       103 ~C~~~  107 (314)
                      .|...
T Consensus        86 yCa~~   90 (106)
T d1lk3l1          86 FCQQS   90 (106)
T ss_dssp             EEEEC
T ss_pred             ccccc
Confidence            99764

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.80  E-value=9.7e-09  Score=68.14  Aligned_cols=83  Identities=13%  Similarity=0.261  Sum_probs=56.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-cee--EEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQT--ILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.........+.|||.. +..  +.....  .......|+.....+ +.++|.|.+++.+|
T Consensus         4 ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~~D   82 (106)
T d1i8ka_           4 LTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGTG-TDFVFTIENTLSED   82 (106)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCCC-CeeeecccCCcccc
Confidence            345577889999999999999866555579999852 211  111111  111223466655443 35689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (106)
T d1i8ka_          83 VGDYYCLQS   91 (106)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEeEecC
Confidence            999999864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.80  E-value=1.1e-08  Score=68.53  Aligned_cols=81  Identities=20%  Similarity=0.359  Sum_probs=57.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ceeEEEeeeeeeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL--REYKVAWVKMI-TQTILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDR   99 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   99 (314)
                      +..+|..+.+.+|++++|.|..++.  ....+.|||.. +....    ..+..++++....+ ....++|.|.+++++|+
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~----~~~~~~gr~~~~~~~~~~~~~L~I~~l~~~Ds   77 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNE----ESISKGGRYVETVNSGSKSFSLRINDLTVEDG   77 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCC----EECCCBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceee----eeeccCCcEeeEEecCCceeeeEecCCcCccC
Confidence            4556788999999999999998542  44679999853 11111    11334456655543 34467899999999999


Q ss_pred             eEEEEEEec
Q psy15734        100 GWYMCQINT  108 (314)
Q Consensus       100 G~Y~C~~~~  108 (314)
                      |.|.|.+..
T Consensus        78 a~YyCA~~~   86 (112)
T d1sq2n_          78 GTYRCGLGV   86 (112)
T ss_dssp             EEEEEEECB
T ss_pred             EEEeEEEec
Confidence            999999853

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.80  E-value=1e-08  Score=68.23  Aligned_cols=83  Identities=18%  Similarity=0.322  Sum_probs=57.2

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-eeE--EEe-e-eeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QTI--LSI-H-HKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~--~~~-~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.........+.|||... ..+  ... . ........++...... .++.|.|.+++.+|
T Consensus         4 ~tQ~p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~~D   82 (107)
T d1j1pl_           4 LTQSPATLSVTPGNSVSLSCRASQSIGNNLHWYQQKSHESPRLLIKYASQSISGIPSRFSGSGSG-TDFTLSINSVETED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EECcCCeEEECCCCCEEEEEEecCCCCcceEEEEeCCCCccEEeeecccCCCceeCCcceecccC-CEEEEEEcccCcCC
Confidence            3456778999999999999998665556799998642 211  111 0 0111123466665544 34689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (107)
T d1j1pl_          83 FGMYFCQQA   91 (107)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEEEcC
Confidence            999999864

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.79  E-value=1.3e-08  Score=67.52  Aligned_cols=82  Identities=18%  Similarity=0.240  Sum_probs=56.5

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +..|..+.+.+|++++|.|.........+.||+...    +.+..... .......++....+. ..+.|.|.+++++|+
T Consensus         4 tQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~~Ds   82 (106)
T d1op3k1           4 TQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSGSG-TEFTLTISGLQFDDF   82 (106)
T ss_dssp             EEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeeccC-CEEEEEEccccccCC
Confidence            355788999999999999998765556799998632    11211111 111123466665543 345899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|...
T Consensus        83 a~YyCa~~   90 (106)
T d1op3k1          83 ATYHCQHY   90 (106)
T ss_dssp             SEEEEEEE
T ss_pred             CcEeeeeC
Confidence            99999874

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.79  E-value=8.1e-09  Score=70.73  Aligned_cols=83  Identities=14%  Similarity=0.237  Sum_probs=53.1

Q ss_pred             CCcceEEEcCCcEEEEEEecC-------CCceEEEEEEcCceeE----EEeeeee----eecCcCEEEEeC-CceeEEEE
Q psy15734         27 PVANVTATVGKEALMACVVEN-------LREYKVAWVKMITQTI----LSIHHKV----VTQNKRVSITFN-DHRSWFLH   90 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~-------~~~~~v~W~~~~~~~~----~~~~~~~----~~~~~~~~~~~~-~~~~~~L~   90 (314)
                      .+..+++.+|++|.|+|.+..       .....+.|++......    .......    ....+|+.+..+ ..++.+|+
T Consensus         7 ~~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~   86 (121)
T d2g5ra1           7 MQSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLS   86 (121)
T ss_dssp             CCSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEE
T ss_pred             eCCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEE
Confidence            356789999999999999842       1235788998542221    1110000    011346666543 23456899


Q ss_pred             EeeecCCCCeEEEEEEecC
Q psy15734         91 LRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~~~  109 (314)
                      |.+++++|+|.|.|.+...
T Consensus        87 I~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          87 IRDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             ECSCCGGGCEEEEEEEEET
T ss_pred             ECCCChHHCEEEEEEEEeC
Confidence            9999999999999999543

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.79  E-value=1.3e-08  Score=67.67  Aligned_cols=83  Identities=17%  Similarity=0.277  Sum_probs=56.4

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-cee---EEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQT---ILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ++.+|..+.+.+|++++|.|.........+.||+.. +..   +...... ......++...... ..+.|.|.+++++|
T Consensus         4 ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~~~-~~~~L~I~~~~~~D   82 (107)
T d1mexl1           4 MTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSGSG-TDFTLTINNVQSED   82 (107)
T ss_dssp             EECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecCCC-Ceeeeeechhheec
Confidence            445677899999999999999865544569999853 111   1111111 11123466665443 45689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        83 sA~YyCa~~   91 (107)
T d1mexl1          83 LAEYFCQQY   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             ceeEEEeEC
Confidence            999999864

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.78  E-value=6.7e-08  Score=64.85  Aligned_cols=83  Identities=12%  Similarity=0.209  Sum_probs=55.9

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeeeee-----eecCcCEEEEeCCceeEEEEEeeec
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHHKV-----VTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~~-----~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ...|..+.+.+|++++|.|.... ....+.|||...    ..+.......     .....++...........|.|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (112)
T d1kgce1           3 SQSPRYKVAKRGQDVALRCDPIS-GHVSLFWYQQALGQGPEFLTYFQNEAQLDKSGLPSDRFFAERPEGSVSTLKIQRTQ   81 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCCEEEEEEECTTSCCEEEEEEETTEEEECTTCCSTTEEEECTTSSCEEEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEECC-CCCEEEeeeeecccceEEeeeeccCcccccCCCCCCceeeECCcCCEEEEEECCCC
Confidence            44577888999999999998654 345799999531    1122111110     1123455555555455689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (112)
T d1kgce1          82 QEDSAVYLCASSL   94 (112)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             cCCCEEEEEeeeC
Confidence            9999999999853

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.78  E-value=2.3e-08  Score=66.40  Aligned_cols=83  Identities=14%  Similarity=0.271  Sum_probs=55.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.........+.||+... .   .+....... .....++.....+ ....|.|.+++.+|
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~i~~l~~~D   82 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG-TDFTLTISSLEPED   82 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS-SEEEEEECSCCTTC
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC-CEEEeEeeeeEecc
Confidence            3456778899999999999998765556799998632 1   111111000 1112344444433 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sa~YyCA~~   91 (108)
T d1jhll_          83 FAMYICQQH   91 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             ceEEEEeeC
Confidence            999999864

>d2cdea1 b.1.1.1 (A:2-115) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.78  E-value=2.1e-08  Score=67.63  Aligned_cols=81  Identities=16%  Similarity=0.204  Sum_probs=56.3

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeee---------cCCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMII---------TGDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+.|....+.+|++++|.|.....+...+.|++...    ..+.         ...++....  +......+|.|.+++
T Consensus         3 V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~~~~--~~~~~~~sL~i~~~~   80 (114)
T d2cdea1           3 VEQSPQSLIILEGKNCTLQCNYTVSPFSNLRWYKQDTGRGPVSLTIMTFSENTKSNGRYTATL--DADTKQSSLHITASQ   80 (114)
T ss_dssp             EEEECSEEEEETTCCCEEEEEECCSCCSEEEEEEECTTSCCCEEEEECSSCSCEEETTEEECB--CSSSSEEEEEECSCC
T ss_pred             cEeeCCEEEEeCCCCEEEEEEEcCCCccCceEEEecCCCceEEeeeeeeeecccccCccceee--cCcccccccEEcccC
Confidence            4566777889999999999999887778899997331    1111         111222211  112235689999999


Q ss_pred             CCCCeEEEEEEeeCCC
Q psy15734        245 SHQFGSYRCVAVNALG  260 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g  260 (314)
                      .+|+|.|.|.+.....
T Consensus        81 ~~Dsg~Y~Ca~~~~~~   96 (114)
T d2cdea1          81 LSDSASYICVVSDRGS   96 (114)
T ss_dssp             GGGCSEEEEEEECSCT
T ss_pred             hhhCcccceeeecCCC
Confidence            9999999999987544

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.77  E-value=1.2e-08  Score=68.90  Aligned_cols=85  Identities=16%  Similarity=0.259  Sum_probs=56.8

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee-eeeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH-KVVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~-~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      +..++..+.+.+|++++|.|.........+.|||... .   .+..... .......++.+..+ ......|.|.+++++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   83 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLHKSSSSFHLQKSSAQLS   83 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCBGGGTBCCEEESSCCGG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeeccCCCCeEEeeccccccc
Confidence            4566778999999999999998766666899998631 1   1111110 01112334554433 223457999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        84 Dsg~YyCa~~~   94 (115)
T d1lp9e1          84 DSALYYCALFL   94 (115)
T ss_dssp             GCEEEEEEEEE
T ss_pred             cCccceEEEEc
Confidence            99999998754

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.77  E-value=1.2e-08  Score=67.68  Aligned_cols=83  Identities=12%  Similarity=0.250  Sum_probs=56.0

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e--eEEEeeeee--eecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q--TILSIHHKV--VTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~--~~~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.........+.||+... .  .+.......  .....++...... ...+|.|.+++++|
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~s~-~~~~L~I~~~~~~D   81 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSGSG-RDYSFSISNLEPED   81 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEECSCCGGG
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeecCC-CEeeeEehhhcccC
Confidence            3455778899999999999998665555699998632 1  111111111  1123466665443 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        82 sA~YyCa~~   90 (106)
T d1a0ql1          82 IATYYCLQY   90 (106)
T ss_dssp             CSEEEEEEC
T ss_pred             CEeEEEEEe
Confidence            999999874

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.77  E-value=1.6e-08  Score=68.04  Aligned_cols=80  Identities=21%  Similarity=0.355  Sum_probs=56.2

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeeeeeeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDR   99 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   99 (314)
                      +...|..+.+.+|++++|.|..++.  ....+.|||... ....    ..+....++....+ ....+.|.|.+++.+|+
T Consensus         3 V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~----~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   78 (113)
T d1vesa_           3 VDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNE----QSISIGGRYVETVNKGSKSFSLRISDLRVEDS   78 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCC----EECCCBTTEEEEEETTTTEEEEEECSCCGGGC
T ss_pred             eEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccce----eeeeecccccceeECCCCceeeeecccccCCc
Confidence            4456788999999999999998653  446799998532 1111    11233445554443 34456899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|.+.
T Consensus        79 a~YyCa~~   86 (113)
T d1vesa_          79 GTYKCQAF   86 (113)
T ss_dssp             EEEEEEEE
T ss_pred             ceEeeeee
Confidence            99999984

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.76  E-value=1.2e-08  Score=68.81  Aligned_cols=84  Identities=18%  Similarity=0.294  Sum_probs=56.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCc----eeEE--Eeee-ee----eecCcCEEEEeCCceeEEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL-REYKVAWVKMIT----QTIL--SIHH-KV----VTQNKRVSITFNDHRSWFLHL   91 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~----~~~~--~~~~-~~----~~~~~~~~~~~~~~~~~~L~i   91 (314)
                      +...|..+++.+|++|+|.|.+... ....+.|||...    +.+.  .... ..    .....++....... ...|.|
T Consensus         3 ~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~~-~~~L~I   81 (114)
T d1akjd_           3 FRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLGD-TFVLTL   81 (114)
T ss_dssp             EEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEETT-EEEEEE
T ss_pred             eeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCCC-ChhcEE
Confidence            3456778889999999999998543 345689999542    1111  1111 00    11234666665543 468999


Q ss_pred             eeecCCCCeEEEEEEec
Q psy15734         92 RDVQETDRGWYMCQINT  108 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~~  108 (314)
                      .+++++|+|.|.|.+..
T Consensus        82 ~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          82 SDFRRENEGYYFCSALS   98 (114)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             ccCCCCCCEEEeEeEcC
Confidence            99999999999999853

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.76  E-value=1.9e-08  Score=66.86  Aligned_cols=81  Identities=20%  Similarity=0.252  Sum_probs=53.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCCCeE
Q psy15734         27 PVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETDRGW  101 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~  101 (314)
                      .|..+.+.+|++++|.|.........+.||+... .   .+....... .....++...... ....|.|.+++.+|+|.
T Consensus         6 Qp~sl~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~Dsav   84 (109)
T d1w72l1           6 QPPSVSVAPGQTARITCGGNNIGSRSVHWYQQKPGQAPVLVVYDDSDRPSGIPERFSGSNSG-NMATLTISRVEAGDEAD   84 (109)
T ss_dssp             CCSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCGGGCEE
T ss_pred             eCCeEEECCCCCEEEEEEcCCCCCcceeeeeccccceeEEEEEccccCCCceeeeEeeecCC-CccceEEeeeccCCCEE
Confidence            3447889999999999998654556799998632 1   111111110 1112355544443 34589999999999999


Q ss_pred             EEEEEec
Q psy15734        102 YMCQINT  108 (314)
Q Consensus       102 Y~C~~~~  108 (314)
                      |.|....
T Consensus        85 YyCA~~~   91 (109)
T d1w72l1          85 YYCQVWD   91 (109)
T ss_dssp             EEEEEEE
T ss_pred             EEEEecC
Confidence            9999753

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.76  E-value=1.6e-08  Score=67.25  Aligned_cols=83  Identities=16%  Similarity=0.242  Sum_probs=56.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++|+|.|.........+.||+... .   .+...... ......++....+. ....|.|.+++++|
T Consensus         4 ~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~D   82 (107)
T d1tjgl1           4 LTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGSGSG-TEFTLTISTLRPED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEeccC-CEEEEEeccceeCc
Confidence            3456788999999999999999765566899998632 1   22211111 11123456555433 34689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sA~YyCa~~   91 (107)
T d1tjgl1          83 FATYYCQQL   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CceEEEEEC
Confidence            999999763

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.75  E-value=1.5e-08  Score=69.20  Aligned_cols=80  Identities=18%  Similarity=0.219  Sum_probs=55.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce-----eee--cCCce------------eeeE-eeCCe
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD-----MII--TGDDY------------EDSR-LINGY  232 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~-----~~~--~~~~~------------~~~~-~~~~~  232 (314)
                      +|.+.+.|....+.+|++++|.|.+.+...+.+.|++-.  ..     .++  .....            +.+. ...+ 
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~~~v~Wyrq~~g~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~s~~~~~~-   79 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVSQGCSWLFQNSSSKLPQPTFVVYMASSHNKITWDEKLNSSKLFSAMRDTN-   79 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCSSCEEEEEEESSCSSCCCEEEEEECSSSCCEEECTTTTGGGTEEEEEETT-
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccCCCEEEEEECCCCCcCceEEEEeeeccccceeeccCCCCCcEEEEECCCC-
Confidence            477888899999999999999999988888889998721  11     011  01000            0110 0111 


Q ss_pred             eeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        233 SCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       233 ~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                       ...+|.|.+++.+|+|.|.|.+.
T Consensus        80 -~~~~L~I~~~~~~Dsg~YyCa~~  102 (122)
T d1nezg_          80 -NKYVLTLNKFSKENEGYYFCSVI  102 (122)
T ss_dssp             -TEEEEEESSCCGGGCEEEEEEEE
T ss_pred             -CEeEEEEcccccCCCEEEEeeEe
Confidence             23589999999999999999875

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.75  E-value=1.8e-08  Score=67.10  Aligned_cols=82  Identities=17%  Similarity=0.235  Sum_probs=55.6

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ce---eEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQ---TILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      ...|..+.+.+|++++|.|.........+.||+.. +.   .+..... .......++...... ....|.|.+++++|+
T Consensus         5 tQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~~DS   83 (109)
T d1mqkl_           5 TQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGSG-TQFSLKINSLLPEDF   83 (109)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGGC
T ss_pred             ECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEeccC-CEEEEEEccccccCC
Confidence            34577889999999999999876555569999953 22   1211111 111123466555433 346899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|.+.
T Consensus        84 a~YyCA~~   91 (109)
T d1mqkl_          84 GSYYCQHH   91 (109)
T ss_dssp             EEEEEEEC
T ss_pred             eeEEEeee
Confidence            99999874

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.75  E-value=3.3e-08  Score=66.30  Aligned_cols=83  Identities=24%  Similarity=0.393  Sum_probs=54.5

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEee-eeeeecCcCEEEEeC-CceeEEEEEeeecCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIH-HKVVTQNKRVSITFN-DHRSWFLHLRDVQETD   98 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~-~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d   98 (314)
                      ...|..+.+.+|++++|.|.........+.||+...    ..+.... ........+...... ......|.|.+++++|
T Consensus         3 ~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (110)
T d1u3ha1           3 RQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKREKKLSLHIADSQPGD   82 (110)
T ss_dssp             ECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETGGGEEEEEESSCCTTS
T ss_pred             EecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCCCCeeEeEeccCCCCC
Confidence            345778889999999999998765566799998631    1111111 011111234333322 2345689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (110)
T d1u3ha1          83 SATYFCAAS   91 (110)
T ss_dssp             CSEEEECCE
T ss_pred             ceeEeeeec
Confidence            999999874

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.75  E-value=2.3e-08  Score=67.61  Aligned_cols=84  Identities=20%  Similarity=0.292  Sum_probs=54.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-c---eeEEEeeee--eeecCcCEEEE-eCCceeEEEEEeeecC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-T---QTILSIHHK--VVTQNKRVSIT-FNDHRSWFLHLRDVQE   96 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~---~~~~~~~~~--~~~~~~~~~~~-~~~~~~~~L~i~~~~~   96 (314)
                      +..++..+.+.+|++++|.|.........+.|||.. +   +.+......  ......+.... ......+.|.|.+++.
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSNSSFHLRKASVHW   82 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTTTBCCEEESSCCG
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcCCEEEEecccccc
Confidence            445677899999999999999876555678999842 1   222211100  11111222222 2233456899999999


Q ss_pred             CCCeEEEEEEe
Q psy15734         97 TDRGWYMCQIN  107 (314)
Q Consensus        97 ~d~G~Y~C~~~  107 (314)
                      +|+|.|.|.+.
T Consensus        83 ~Dsg~YyCa~~   93 (115)
T d1i9ea_          83 SDSAVYFCAVS   93 (115)
T ss_dssp             GGCEEEEEEEE
T ss_pred             cccceeccccc
Confidence            99999999875

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.74  E-value=2.1e-08  Score=66.63  Aligned_cols=83  Identities=16%  Similarity=0.284  Sum_probs=56.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.........+.||+... .   .+..... .......++...... ....|.|.+++.+|
T Consensus         4 ~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~~~-~~~~L~I~~~~~~D   82 (107)
T d1d5il1           4 MTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSGSG-QDYSLTISSLEYED   82 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecccC-CEEEccccccCCcC
Confidence            3455778899999999999998765556789998632 1   1211111 111123466655443 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (107)
T d1d5il1          83 MGIYYCLQY   91 (107)
T ss_dssp             CEEEEEEEC
T ss_pred             CEEEEeeec
Confidence            999999864

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.74  E-value=4.1e-08  Score=65.84  Aligned_cols=84  Identities=19%  Similarity=0.314  Sum_probs=56.6

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-c---eeEEEeee-eeeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-T---QTILSIHH-KVVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~---~~~~~~~~-~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      +...|..+.+.+|++++|.|.........+.||+.. +   ..+..... .......++....+ ..+..+|.|.+++.+
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~   82 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKSAKHLSLHIVPSQPG   82 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETTTTEEEEEESSCCGG
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEccCCEEEEEECCCccc
Confidence            345577888999999999999876555678999863 1   11211110 01112345554433 345679999999999


Q ss_pred             CCeEEEEEEe
Q psy15734         98 DRGWYMCQIN  107 (314)
Q Consensus        98 d~G~Y~C~~~  107 (314)
                      |+|.|.|.+.
T Consensus        83 Dsa~YyCa~~   92 (111)
T d1bd2d1          83 DSAVYFCAAM   92 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             ccEEEEeecc
Confidence            9999999875

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.74  E-value=3.9e-08  Score=66.39  Aligned_cols=85  Identities=16%  Similarity=0.281  Sum_probs=56.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeee--eeeecCcCEEEEeC-CceeEEEEEeeecC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHH--KVVTQNKRVSITFN-DHRSWFLHLRDVQE   96 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~--~~~~~~~~~~~~~~-~~~~~~L~i~~~~~   96 (314)
                      +...+..+.+.+|++++|.|.........+.||+...    +.+.....  .......++..... ......|.|.++++
T Consensus         3 vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   82 (115)
T d1j8hd1           3 VTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKSETSFHLTKPSAHM   82 (115)
T ss_dssp             EECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGGGTBCCEEESSCCG
T ss_pred             EEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCCCCEEEEeeccccc
Confidence            3456778999999999999998765566899998531    22221111  11112234443322 22345799999999


Q ss_pred             CCCeEEEEEEec
Q psy15734         97 TDRGWYMCQINT  108 (314)
Q Consensus        97 ~d~G~Y~C~~~~  108 (314)
                      +|+|.|.|.+..
T Consensus        83 ~Dsa~YyCa~~~   94 (115)
T d1j8hd1          83 SDAAEYFCAVSE   94 (115)
T ss_dssp             GGCEEEEEEEES
T ss_pred             cCCccceeeecC
Confidence            999999999864

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.74  E-value=9.9e-08  Score=63.87  Aligned_cols=82  Identities=13%  Similarity=0.220  Sum_probs=55.6

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee-eee----ecCcCEEEEeCCceeEEEEEeeec
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH-KVV----TQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~-~~~----~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ...|..+.+.+|++++|.|.... ....+.|||... .   .+..... ...    ..+.++...........|.|.+++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~L~i~~~~   81 (111)
T d2esve1           3 TQFPSHSVIEKGQTVTLRCDPIS-GHDNLYWYRRVMGKEIKFLLHFVKESKQDESGMPNNRFLAERTGGTYSTLKVQPAE   81 (111)
T ss_dssp             EEECSEEEEETTCCEEEEEECCT-TCSEEEEEEEETTSCEEEEEEEETTEEEECTTCCSTTEEEECTTSSSEEEEESSCC
T ss_pred             EECCCEEEECCCCCEEEEEEECC-CCceEEEEEEccCCcceecceecccCcccccCCCCccEEEEcCCCCEEEEEECCcc
Confidence            45577888999999999998654 345899998632 1   1221111 111    123456655554455689999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      .+|+|.|.|.+.
T Consensus        82 ~~Dsa~YyCa~~   93 (111)
T d2esve1          82 LEDSGVYFCASS   93 (111)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             cCCCceEEEeee
Confidence            999999999864

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.72  E-value=5.6e-08  Score=65.65  Aligned_cols=83  Identities=19%  Similarity=0.312  Sum_probs=55.2

Q ss_pred             ecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcC----ceeEEEeeee----e--e---ecCcCEEEEe-CCceeEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVEN-LREYKVAWVKMI----TQTILSIHHK----V--V---TQNKRVSITF-NDHRSWFL   89 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~----~~~~~~~~~~----~--~---~~~~~~~~~~-~~~~~~~L   89 (314)
                      +..|..+.+.+|++++|.|.+.+ .....+.||+..    .+.+......    .  .   ....++.... .......|
T Consensus         2 ~Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~L   81 (115)
T d2atpb1           2 IQTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIILESSDSRRPFL   81 (115)
T ss_dssp             EEECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEEESTTSSSCEE
T ss_pred             EeeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEEEeCCCCeEEE
Confidence            45677889999999999999876 345679999852    2222111000    0  0   1123444443 33445689


Q ss_pred             EEeeecCCCCeEEEEEEe
Q psy15734         90 HLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        90 ~i~~~~~~d~G~Y~C~~~  107 (314)
                      .|.+++.+|+|.|.|.+.
T Consensus        82 ~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          82 SIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EECSCCGGGCEEEEEEEE
T ss_pred             eecccCCCCCcEEEEeEc
Confidence            999999999999999874

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.72  E-value=1.2e-07  Score=63.86  Aligned_cols=84  Identities=12%  Similarity=0.215  Sum_probs=54.3

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCce-eEEEeeee----e---eecCcCEEEEeCCceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQ-TILSIHHK----V---VTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~-~~~~~~~~----~---~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +...|..+.+.+|++++|.|.... ....+.||+.... .+......    .   .....+..........+.|.|.+++
T Consensus         2 VtQsP~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (114)
T d1ogae1           2 ITQSPKYLFRKEGQNVTLSCEQNL-NHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQ   80 (114)
T ss_dssp             EECSCSEEEEETTCCEEECCEECS-CCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCC
T ss_pred             cEEcCCeEEEcCCCCEEEEEEEec-CCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCC
Confidence            345677889999999999999853 4458999986421 11111000    0   0111233333333345689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      .+|+|.|.|....
T Consensus        81 ~~DSa~YyCa~~~   93 (114)
T d1ogae1          81 KNPTAFYLCASSS   93 (114)
T ss_dssp             SCCCEEEEEEEES
T ss_pred             cCCceeEEEeecc
Confidence            9999999998753

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.71  E-value=1.1e-08  Score=67.57  Aligned_cols=79  Identities=19%  Similarity=0.272  Sum_probs=52.5

Q ss_pred             CcceEEEcCCcEEEEEEecCCCceEEEEEEcCce-eEEEee---e-eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         28 VANVTATVGKEALMACVVENLREYKVAWVKMITQ-TILSIH---H-KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~-~~~~~~---~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      |..+.+.+|++++|.|.........+.|||.... .+....   . .......++....+. ....|.|.+++++|+|.|
T Consensus         5 p~sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~Dsa~Y   83 (103)
T d8faba1           5 PPSVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSSTSG-TTVTLTISGVQAEDEADY   83 (103)
T ss_dssp             CSEEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCGGGCEEE
T ss_pred             CCeEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECCCC-CccCceEcCcchhHCceE
Confidence            3478899999999999986655557899986321 111110   0 001123355554443 345899999999999999


Q ss_pred             EEEEe
Q psy15734        103 MCQIN  107 (314)
Q Consensus       103 ~C~~~  107 (314)
                      .|.+.
T Consensus        84 yCA~~   88 (103)
T d8faba1          84 YCQAW   88 (103)
T ss_dssp             EEEEE
T ss_pred             Eeeec
Confidence            99864

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.71  E-value=3.6e-08  Score=65.77  Aligned_cols=83  Identities=16%  Similarity=0.258  Sum_probs=56.8

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e--eEEEe--eeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q--TILSI--HHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~--~~~~~--~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|...+.....+.||+... .  .++..  .........++....++ .+..|.|.+++++|
T Consensus         6 ltQsP~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~l~~~D   84 (109)
T d1bwwa_           6 MTQSPSSLSASVGDRVTITCQASQDIIKYLNWYQQKPGKAPKLLIYEASNLQAGVPSRFSGSGSG-TDYTFTISSLQPED   84 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EEeeCCEEEECCCCCEEEEEEecCCCCCcceEeeeccCCCCEEEEEecccCCCCCCCCEEeeCCC-CEeEEEEeeceeCc
Confidence            3455778999999999999999765556789998632 1  11111  11111223466665543 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        85 sa~YyCA~~   93 (109)
T d1bwwa_          85 IATYYCQQY   93 (109)
T ss_dssp             CEEEEEEEC
T ss_pred             CceEEEeec
Confidence            999999874

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.70  E-value=4.7e-08  Score=65.95  Aligned_cols=81  Identities=15%  Similarity=0.195  Sum_probs=54.7

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+++..+.+.+|++++|.|.........+.|++...    +.+..         ..++.....  .......|.|.+++
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   81 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYSPFLFWYVQHLNEAPKLLLKSFTDNKRPEHQGFHATLH--KSSSSFHLQKSSAQ   81 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSSCCEEEEEECTTSCCEEEEESCSSTTCCCCSSCEECCB--GGGTBCCEEESSCC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCcCCeeEEEeCCCCceeeeeeeeeccCCcceeeeeeecc--CCCCeEEeeccccc
Confidence            4566777889999999999999887788899987421    11111         111222111  11123479999999


Q ss_pred             CCCCeEEEEEEeeCCC
Q psy15734        245 SHQFGSYRCVAVNALG  260 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g  260 (314)
                      .+|+|.|.|.+....+
T Consensus        82 ~~Dsg~YyCa~~~~~~   97 (115)
T d1lp9e1          82 LSDSALYYCALFLASS   97 (115)
T ss_dssp             GGGCEEEEEEEEECSS
T ss_pred             cccCccceEEEEcCCC
Confidence            9999999998766443

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.70  E-value=5e-08  Score=65.26  Aligned_cols=84  Identities=14%  Similarity=0.213  Sum_probs=54.8

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeee----eeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHH----KVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~----~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+...|..+.+.+|++++|.|...+ ....+.|||... .   .+.....    .......++.........+.|.|.++
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~   81 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPSQEQFSLILESA   81 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEETTEEEEEESSC
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEeccCCEEEEEECCC
Confidence            3455678889999999999999865 345799999532 1   1221110    00011123333333334568999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +++|+|.|.|...
T Consensus        82 ~~~Dsa~YyCa~~   94 (110)
T d2aq2a1          82 TPSQTSVYFCASG   94 (110)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CHhhCEEEEEeeC
Confidence            9999999999875

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.70  E-value=1.1e-07  Score=63.82  Aligned_cols=83  Identities=12%  Similarity=0.202  Sum_probs=55.3

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC--cee--EEEeee--e--eeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMI--TQT--ILSIHH--K--VVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~--~~~~~~--~--~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      ...|..+.+.+|++++|.|...+ ....+.|||..  ...  +.....  .  ......++...........|.|.++++
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (113)
T d2ntsp1           3 TQTPRYLIKTRGQQVTLSCSPIS-GHRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFSGRQFSNSRSEMNVSTLEL   81 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEECST-TCCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEEEEECTTSCEEEEECSCCG
T ss_pred             EeCCCeEEECCCCCEEEEEEECC-CCCEEEEEEeecccceEeeeeecccccccccccccceeeccCcCCeeEEEECCCCc
Confidence            34577788999999999999755 34579999842  211  111110  0  011233555555445566899999999


Q ss_pred             CCCeEEEEEEec
Q psy15734         97 TDRGWYMCQINT  108 (314)
Q Consensus        97 ~d~G~Y~C~~~~  108 (314)
                      +|+|.|.|.+..
T Consensus        82 ~Dsa~YyCA~~~   93 (113)
T d2ntsp1          82 GDSALYLCASSL   93 (113)
T ss_dssp             GGCEEEEEEEES
T ss_pred             ccceeeeeeeeC
Confidence            999999998753

>d3bp5a1 b.1.1.1 (A:1-114) Programmed cell death protein 1, PD1, extracellular domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Programmed cell death protein 1, PD1, extracellular domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.70  E-value=2e-07  Score=62.57  Aligned_cols=24  Identities=21%  Similarity=0.354  Sum_probs=21.1

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..|.|.+++.+|+|.|.|.+....
T Consensus        73 ~~L~I~~~~~~Dsg~YyCa~~~~~   96 (114)
T d3bp5a1          73 FHMNILDTRRNDSGIYLCGAISLH   96 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEECSS
T ss_pred             EEEEECccCcCCCeEEEEEEEeCC
Confidence            489999999999999999887544

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.69  E-value=8.6e-08  Score=64.43  Aligned_cols=81  Identities=15%  Similarity=0.128  Sum_probs=56.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce--eee---------cCCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD--MII---------TGDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~--~~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+.|....+.+|++++|.|...+.....+.|++..  +.  .+.         ...++........  ....|.|.+++
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~~~   80 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDSAIYNLQWFRQDPGKGLTSLLLIQSSQREQTSGRLNASLDKSS--GRSTLYIAASQ   80 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCCCEEEEEEEEECTTSCEEEEEEEETTCCEEEETTEEEEEETTT--TEEEEEESSCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecCcccCCeEEEeccccccceeeeeccceecccccceeeeeccCC--CEEEeeeecCC
Confidence            566778888999999999999988777788999732  11  111         0112222222212  34589999999


Q ss_pred             CCCCeEEEEEEeeCCC
Q psy15734        245 SHQFGSYRCVAVNALG  260 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g  260 (314)
                      .+|+|.|.|.+....+
T Consensus        81 ~~Dsg~YyCa~~~~~~   96 (113)
T d2bnqd1          81 PGDSATYLCAVRPTSG   96 (113)
T ss_dssp             GGGCEEEEEEEEESSS
T ss_pred             CCCCcEEeEeEecCCC
Confidence            9999999999876544

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.69  E-value=6.9e-08  Score=65.06  Aligned_cols=85  Identities=16%  Similarity=0.331  Sum_probs=54.7

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcC--cee--EEEeee--eeeecCcCEEEEeC-CceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMI--TQT--ILSIHH--KVVTQNKRVSITFN-DHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~--~~~--~~~~~~--~~~~~~~~~~~~~~-~~~~~~L~i~~~~   95 (314)
                      +...+..+.+.+|++|+|.|.... .....+.||+..  +.+  +.....  .......+..+... ......|.|.+++
T Consensus         3 VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   82 (114)
T d2ak4d1           3 VTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKSTSSFNFTITASQ   82 (114)
T ss_dssp             EECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETTTTEEEEEESSCC
T ss_pred             EEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCCCCEEEEeecccc
Confidence            445677889999999999998754 344568999853  221  211111  00111234444332 2345689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      ++|+|.|.|.+..
T Consensus        83 ~~Dsg~YyCa~~~   95 (114)
T d2ak4d1          83 VVDSAVYFCALSG   95 (114)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cccCCCceEeCCC
Confidence            9999999998743

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.69  E-value=7.1e-08  Score=64.72  Aligned_cols=80  Identities=13%  Similarity=0.222  Sum_probs=51.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC-ceEEEEEEcC-ce---eEEEeeeee-eecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         27 PVANVTATVGKEALMACVVENLR-EYKVAWVKMI-TQ---TILSIHHKV-VTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~-~~~v~W~~~~-~~---~~~~~~~~~-~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      .|..+.+.+|++|+|.|..++.. ...+.|||.. +.   .+....... .....++.+..+ .....|.|.+++++|+|
T Consensus         4 qP~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~-~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           4 QPNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED-RKSSTLILHRATLRDAA   82 (112)
T ss_dssp             CCSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT-SSEEEEEESSCCGGGCE
T ss_pred             CCCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc-CCeeEEEEeecccccce
Confidence            45678899999999999986533 3459999953 22   122111100 111123333332 34558999999999999


Q ss_pred             EEEEEEe
Q psy15734        101 WYMCQIN  107 (314)
Q Consensus       101 ~Y~C~~~  107 (314)
                      .|.|.+.
T Consensus        83 ~YyCa~~   89 (112)
T d1kgcd1          83 VYYCILP   89 (112)
T ss_dssp             EEEEECC
T ss_pred             eEeeeEe
Confidence            9999874

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.69  E-value=8.3e-08  Score=64.10  Aligned_cols=85  Identities=18%  Similarity=0.254  Sum_probs=56.7

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ce--eEEEeee--eeeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQ--TILSIHH--KVVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      +...+..+.+.+|++++|.|.........+.|||.. +.  .++....  .......++..... ......|.|.+++++
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~~~~~L~i~~~~~~   82 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEATSFHLQKASVQES   82 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTTTBCCEEEEEECGG
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCCCEEeeeecCcCcC
Confidence            345677899999999999999866555679999953 21  1111111  01112335555433 234568999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        83 Dsa~YyCA~~~   93 (110)
T d1ac6a_          83 DSAVYYCALSG   93 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             CCcccceeecC
Confidence            99999998753

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.69  E-value=9.3e-08  Score=63.96  Aligned_cols=80  Identities=18%  Similarity=0.262  Sum_probs=53.4

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee--EEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT--ILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~--~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      |..+.+.+|++++|.|...+.  ....+.||+... ..  .+....  .......++....++. .+.|.|.+++.+|+|
T Consensus         7 p~s~~v~~G~svtl~C~~s~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~-~~~L~I~~~~~~Dsa   85 (111)
T d1rzfl1           7 PPSVSAAPGQKVTISCSGSSSNIGNNDVSWYQQFPGTVPKLVIYENNERPSGIPDRFSGSKSGT-SATLGITGLQTGDEA   85 (111)
T ss_dssp             CSEEEECTTSCEEEEEECCCCCCCTSCEEEEEECTTSCCEEEEBTTTBCCTTCCTTEEEEEETT-EEEEEESSCCGGGCS
T ss_pred             CcceEeCCCCCEEEEEEECCcCCcCCcccceeeecccceEEEeeecCCCccccccceeeeCCCC-EeeeEEeeeccccCc
Confidence            347899999999999998543  345699998632 11  111110  0111234666655443 458999999999999


Q ss_pred             EEEEEEec
Q psy15734        101 WYMCQINT  108 (314)
Q Consensus       101 ~Y~C~~~~  108 (314)
                      .|.|....
T Consensus        86 ~YyCA~~~   93 (111)
T d1rzfl1          86 DYYCGTWD   93 (111)
T ss_dssp             EEEEEEEE
T ss_pred             ceEEeecC
Confidence            99998753

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.68  E-value=7.9e-08  Score=64.90  Aligned_cols=85  Identities=20%  Similarity=0.300  Sum_probs=56.0

Q ss_pred             eecCCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCc-eeE---EEeee--eeeecCcCEEEEeC-CceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVEN-LREYKVAWVKMIT-QTI---LSIHH--KVVTQNKRVSITFN-DHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~-~~~---~~~~~--~~~~~~~~~~~~~~-~~~~~~L~i~~~~   95 (314)
                      +..++..+.+.+|++|+|.|.... .....+.|||... ..+   .....  ......+++.+..+ ......|.|.+++
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   81 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKPKSSIGLIITATQ   81 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGGGTEEEEEECSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEeccCCEEEEEECCCC
Confidence            445677899999999999999854 3445789998531 111   11110  00111235555543 2345689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      ++|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (115)
T d1fo0a_          82 IEDSAVYFCAMRG   94 (115)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccccccccceeec
Confidence            9999999999853

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.68  E-value=6.8e-08  Score=64.87  Aligned_cols=85  Identities=13%  Similarity=0.254  Sum_probs=56.5

Q ss_pred             CceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEeeee-ee---ecCcCEEEEeCCceeEEEEEee
Q psy15734         22 PRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIHHK-VV---TQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        22 p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~~~-~~---~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      +.+...|..+.+.+|++++|.|.... ....+.|||...    +.+...... ..   ....++...........|.|.+
T Consensus         2 ~~VtQ~P~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~   80 (113)
T d1nfdb1           2 SGVVQSPRHIIKEKGGRSVLTCIPIS-GHSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQFDDYHSEMNMSA   80 (113)
T ss_dssp             CSCEEECSEEEEETTCCCEEEEECCT-TCCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEECTTSCEEEECCS
T ss_pred             CCEEEcCCEEEEeCCCCEEEEEEeCC-CCCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcCCCCeEEEEecc
Confidence            44566688889999999999998754 345799999642    112111110 01   1123554444444456899999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++++|+|.|.|.+.
T Consensus        81 ~~~~Dsa~YyCa~~   94 (113)
T d1nfdb1          81 LELEDSAMYFCASS   94 (113)
T ss_dssp             CCGGGCEEECEEEE
T ss_pred             cCcCCceeEEEEee
Confidence            99999999999875

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.67  E-value=1.4e-07  Score=63.23  Aligned_cols=84  Identities=21%  Similarity=0.339  Sum_probs=53.2

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC--cee-EEEeeeeeeecCcCE-E-EEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI--TQT-ILSIHHKVVTQNKRV-S-ITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~--~~~-~~~~~~~~~~~~~~~-~-~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++++|.|.... ....+.||+..  ... ++.........+... . ..........|.|.+++++|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTT-TMRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEec-CCccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            345577899999999999999865 34579999953  211 111111111111111 1 11222345589999999999


Q ss_pred             CeEEEEEEec
Q psy15734         99 RGWYMCQINT  108 (314)
Q Consensus        99 ~G~Y~C~~~~  108 (314)
                      +|.|.|.+..
T Consensus        83 sa~YyCa~~~   92 (113)
T d1h5ba_          83 SGTYFCAAEA   92 (113)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEEecC
Confidence            9999999753

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.67  E-value=7e-08  Score=64.07  Aligned_cols=82  Identities=18%  Similarity=0.263  Sum_probs=55.2

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEee--e--eeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIH--H--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~--~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      ..|..+.+.+|++++|.|.........+.|||.. +..+....  .  .......|+.....+ ....|.|.+++++|+|
T Consensus         4 tQP~s~~~~~G~svtl~C~~~~~~~~~i~WYrQ~~g~~p~~l~y~~~~~~~~~~~rf~~~~~~-~~~~L~I~~l~~~Dsa   82 (108)
T d1nfde1           4 IQPSSASVTVGETVKITCSGDQLPKNFAYWFQQKSDKNILLLIYMDNKRPSGIPERFSGSTSG-TTATLTISGAQPEDEA   82 (108)
T ss_dssp             ECCSEEEEETTSCCCEEEEETTGGGSCCEEEEECTTCCEEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEETTCCGGGCS
T ss_pred             ECCCeeEECCCCCEEEEEECCCCCCccEEEEecccccceeeeccccccccccccceeeecCCC-CEeeeeEcCccccCCc
Confidence            3356788999999999998865444578999863 22221111  0  001123467666544 3458999999999999


Q ss_pred             EEEEEEec
Q psy15734        101 WYMCQINT  108 (314)
Q Consensus       101 ~Y~C~~~~  108 (314)
                      .|.|....
T Consensus        83 ~YyCA~~~   90 (108)
T d1nfde1          83 AYYCLSSY   90 (108)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeec
Confidence            99998753

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.67  E-value=2.5e-07  Score=62.33  Aligned_cols=83  Identities=11%  Similarity=0.181  Sum_probs=54.8

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec-CCceeEEecCC---Cee-eec------------CCceeeeEeeCCeeeEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEK---GDM-IIT------------GDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~---~~~-~~~------------~~~~~~~~~~~~~~~~s~L~  239 (314)
                      .++..+....+.+|++++|.|..++. ....+.|++..   +.. +..            ..++.......  ....+|.
T Consensus         2 ~VtQ~p~~~~~~~G~~vtL~C~~~~~~~~~~i~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~rf~~~~~~~--~~~~~L~   79 (116)
T d1tvda_           2 KVTQSSPDQTVASGSEVVLLCTYDTVYSNPDLFWYRIRPDYSFQFVFYGDDSRSEGADFTQGRFSVKHILT--QKAFHLV   79 (116)
T ss_dssp             EEECCSCCEEEETTCCEEECCEEECCSSSCCEEEEEECTTSCEEEEEEECSSCEEECGGGTTTEEEEEEGG--GTEEEEE
T ss_pred             CEEccCCCEEEcCCCCEEEEEEEcCCccCCcEEEEEeCCCCceEEeeecccccccccCccceEEEEEecCc--eeEEeee
Confidence            35667788889999999999988654 56788898621   111 110            11222221111  1235899


Q ss_pred             EeecCCCCCeEEEEEEeeCCCC
Q psy15734        240 IRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      |.+++.+|+|.|.|.+....+.
T Consensus        80 I~~~~~~Dsg~YyCa~~~~~~~  101 (116)
T d1tvda_          80 ISPVRTEDSATYYCAFTLPPPT  101 (116)
T ss_dssp             ESSCCGGGCEEEEEEEECTTTT
T ss_pred             ecCccccccccceeeEecCCCC
Confidence            9999999999999988765443

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.67  E-value=1.2e-07  Score=64.18  Aligned_cols=85  Identities=16%  Similarity=0.314  Sum_probs=57.5

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcC--c-eeEEEeeeeee--ecCcCEEEEeCC-ceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLR--EYKVAWVKMI--T-QTILSIHHKVV--TQNKRVSITFND-HRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~--~-~~~~~~~~~~~--~~~~~~~~~~~~-~~~~~L~i~~~~   95 (314)
                      ++.++..+.+.+|++++|.|..++..  ...+.|||..  . ..++.......  ....|+....+. .+...|.|.+++
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~~~~~L~i~~~~   83 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAKNLAVLKILAPS   83 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGGTEEEEEESSCC
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccccceeccccccc
Confidence            45667788999999999999997543  4679999852  1 11111111111  123467666542 235689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      ++|+|.|.|....
T Consensus        84 ~~Dsa~YyCA~~~   96 (120)
T d1hxma1          84 ERDEGSYYCACDT   96 (120)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             ccCCceeecCccc
Confidence            9999999998754

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.66  E-value=1.1e-07  Score=63.81  Aligned_cols=81  Identities=19%  Similarity=0.234  Sum_probs=53.5

Q ss_pred             CCcceEEEcCCcEEEEEEecCC---CceEEEEEEcCc-eeE--EEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         27 PVANVTATVGKEALMACVVENL---REYKVAWVKMIT-QTI--LSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~~-~~~--~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      .|..+.+.+|++++|.|...+.   ....+.|||... +.+  .....  .......++...... +...|.|.+++++|
T Consensus         6 QP~s~~~~~G~svtl~C~~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~-~~~~L~I~~l~~~D   84 (112)
T d1lgva1           6 QPASVSGSPGQSITVSCTGVSSIVGSYNLVSWYQQHPGKAPKLLTYEVNKRPSGVSDRFSGSKSG-NSASLTISGLQAED   84 (112)
T ss_dssp             CCSEEEECTTCCEEEEEECCCCSSSCCCCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEECSCCGGG
T ss_pred             CCCcEEECCCCCEEEEEEeCCCCCCCCCcceeeeeeecccceeeeeeeccccCCCcccEEEECCC-CEeeEEeCcCcccc
Confidence            3567899999999999998653   334689998532 111  11100  111123355555443 34689999999999


Q ss_pred             CeEEEEEEec
Q psy15734         99 RGWYMCQINT  108 (314)
Q Consensus        99 ~G~Y~C~~~~  108 (314)
                      +|.|.|....
T Consensus        85 sa~YyCa~~~   94 (112)
T d1lgva1          85 EADYYCSSYD   94 (112)
T ss_dssp             CEEEEEEEEC
T ss_pred             CEEEEEeeec
Confidence            9999998754

>d1xeda_ b.1.1.1 (A:) Polymeric-immunoglobulin receptor, PIGR {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Polymeric-immunoglobulin receptor, PIGR
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=4.7e-08  Score=66.20  Aligned_cols=91  Identities=11%  Similarity=0.111  Sum_probs=56.7

Q ss_pred             CCCcceeecCccEEEEEEEeec---CCceeEEecCCCe----eeecC---------CceeeeEeeCCeeeEEEEEEeecC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAF---PASLNYWTNEKGD----MIITG---------DDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~---p~p~~~W~~~~~~----~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      .|..+.+.+|++++|.|.....   ....+.|++....    .+...         .+..+.  .+......+|.|.+++
T Consensus         5 ~P~~V~~~~G~svtL~C~y~~~~~~~~~~~~W~r~~~~~~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~sL~I~~l~   82 (116)
T d1xeda_           5 GPEEVNSVEGNSVSITCYYPPTSVNRHTRKYWCRQGARGGCITLISSEGYVSSKYAGRANLT--NFPENGTFVVNIAQLS   82 (116)
T ss_dssp             CCSEEEEETTCCEEEEEECCCCHHHHHSCEEEEEC-----CEEEEESSSCBCTTTTTTEEEE--EETTTTEEEEEECSCC
T ss_pred             CCCEEEEcCCCCEEEEEEECCCCCccceeEEEEEcCCCCCcEEEEECcccccceecCCccEe--eeCCCCEEEEEEhhhC
Confidence            4566788999999999987532   2345678874321    11111         111121  1111234589999999


Q ss_pred             CCCCeEEEEEEeeCCCCceeEEEEEEEec
Q psy15734        245 SHQFGSYRCVAVNALGETDGFIKVYVNLV  273 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~~g~~~~~~~l~V~~~  273 (314)
                      .+|+|.|.|.+..........+.|.|...
T Consensus        83 ~~DsG~Y~C~v~~~~~~~~~~v~L~V~~~  111 (116)
T d1xeda_          83 QDDSGRYKCGLGINSRGLSFDVSLEVLEH  111 (116)
T ss_dssp             GGGCEEEEEEESCGGGCCEEEEEEEEECC
T ss_pred             cCCCEEEEEEEEcCCCCceEeEEEEEECC
Confidence            99999999998765544455667777654

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.65  E-value=1.4e-07  Score=63.12  Aligned_cols=76  Identities=24%  Similarity=0.359  Sum_probs=45.8

Q ss_pred             ceEEEcCCcEEEEEEecCC---Cce--EEEEEEcCceeEEEeeee--e-eec----CcCEEEEeCCceeEEEEEeeecCC
Q psy15734         30 NVTATVGKEALMACVVENL---REY--KVAWVKMITQTILSIHHK--V-VTQ----NKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~---~~~--~v~W~~~~~~~~~~~~~~--~-~~~----~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      .+.+..|++++|+|.+...   ...  ...|.+.....+......  . ...    ..+.....+   ..+|.|.+++.+
T Consensus         3 ~V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~---~~sL~I~~v~~~   79 (110)
T d1ncna_           3 KIQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD---SWTLRLHNLQIK   79 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETT---TTEEEECSCCGG
T ss_pred             EEEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCC---eEEEEECCCChh
Confidence            5778899999999998532   222  344445343333222111  1 111    123333322   247999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        80 D~G~Y~C~V~~   90 (110)
T d1ncna_          80 DKGLYQCIIHH   90 (110)
T ss_dssp             GCEEEEEEEEE
T ss_pred             HCEEEEEEEEe
Confidence            99999999853

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.65  E-value=6.5e-08  Score=65.64  Aligned_cols=83  Identities=19%  Similarity=0.279  Sum_probs=53.3

Q ss_pred             CCcceEEEcCCcEEEEEEecC------CCceEEEEEEcCce--eEE-Eeeeee---eecCcCEEEEeC-CceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVEN------LREYKVAWVKMITQ--TIL-SIHHKV---VTQNKRVSITFN-DHRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~------~~~~~v~W~~~~~~--~~~-~~~~~~---~~~~~~~~~~~~-~~~~~~L~i~~   93 (314)
                      .|..+.+.+|++|.|+|.+..      .....+.|++....  ... ......   .....|+.+..+ ..+..+|.|.+
T Consensus         6 ~P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~   85 (118)
T d1qfoa_           6 SPKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKD   85 (118)
T ss_dssp             CCSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECS
T ss_pred             CCCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECC
Confidence            456889999999999999742      12346778875322  111 111100   112346666543 23456899999


Q ss_pred             ecCCCCeEEEEEEecC
Q psy15734         94 VQETDRGWYMCQINTV  109 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~~~  109 (314)
                      ++.+|+|.|.|++...
T Consensus        86 v~~~DsG~Y~C~v~~~  101 (118)
T d1qfoa_          86 LKPEDSGTYNFRFEIS  101 (118)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             CChhHCEEEEEEEEeC
Confidence            9999999999999643

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.65  E-value=1.4e-08  Score=67.44  Aligned_cols=83  Identities=16%  Similarity=0.273  Sum_probs=54.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-eeE---EEeee-eeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-QTI---LSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      +...|..+.+.+|++|+|.|.........+.||+... +.+   ..... .......++...... ..+.|.|.+++++|
T Consensus         4 ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~~D   82 (107)
T d3cx5k1           4 LTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG-TDYSLTISNLEPED   82 (107)
T ss_dssp             EEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET-TEEEEECSCCCSCC
T ss_pred             EECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC-CEEEEEEeEeeecC
Confidence            3455778889999999999998766566799998642 221   11110 111112344443332 34689999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        83 sa~YyCa~~   91 (107)
T d3cx5k1          83 IATYFCQHH   91 (107)
T ss_dssp             CSEEEEEEC
T ss_pred             CCcEEeeeC
Confidence            999999863

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.65  E-value=4.3e-08  Score=65.33  Aligned_cols=82  Identities=18%  Similarity=0.277  Sum_probs=54.9

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC-CceEEEEEEcCc-ee--EEEeeee--eeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENL-REYKVAWVKMIT-QT--ILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~-~~~~v~W~~~~~-~~--~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ...|..+.+.+|++++|.|..... ....+.||+... ..  .+.....  ......++...... ....|.|.+++++|
T Consensus         5 tQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~~~~-~~~~L~I~~~~~~D   83 (108)
T d2fx7l1           5 TQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGSGSG-TDFTLTISRLEPED   83 (108)
T ss_dssp             ECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEET-TEEEEEESSCCGGG
T ss_pred             EeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeeecCC-CEEEEEehHheecc
Confidence            356788899999999999998643 345789998642 11  1111110  11123356555443 34589999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|...
T Consensus        84 sa~YyCa~~   92 (108)
T d2fx7l1          84 FAVYYCQQY   92 (108)
T ss_dssp             CSEEEEEEC
T ss_pred             cEEEeeecC
Confidence            999999874

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.64  E-value=3.8e-08  Score=66.27  Aligned_cols=82  Identities=18%  Similarity=0.254  Sum_probs=54.3

Q ss_pred             CCcceEEEcCCcEEEEEEecC--CCceEEEEEEcCc----eeEEEeeeee----eecCcCEEEEeC-CceeEEEEEeeec
Q psy15734         27 PVANVTATVGKEALMACVVEN--LREYKVAWVKMIT----QTILSIHHKV----VTQNKRVSITFN-DHRSWFLHLRDVQ   95 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~~----~~~~~~~~~~----~~~~~~~~~~~~-~~~~~~L~i~~~~   95 (314)
                      |.+.+.+.+|++++|.|.+.+  .....+.|+|...    ..+.......    ....+|+.+..+ ..+..+|.|.+++
T Consensus         5 pe~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~~~~~~~~~~Lti~~l~   84 (113)
T d1smoa_           5 TEEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILEDYHDHGLLRVRMVNLQ   84 (113)
T ss_dssp             SEEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEEEETTTTEEEEEECSCC
T ss_pred             ccCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEEEECCCCEEEEEEccCC
Confidence            445677889999999999753  2445789998632    1121111110    112247777653 4455689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      .+|+|.|.|.+..
T Consensus        85 ~~Dsg~Y~Cav~~   97 (113)
T d1smoa_          85 VEDSGLYQCVIYQ   97 (113)
T ss_dssp             GGGCEEEEEEECC
T ss_pred             cccCceEEEEEEC
Confidence            9999999999853

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.64  E-value=6.8e-08  Score=64.59  Aligned_cols=82  Identities=20%  Similarity=0.233  Sum_probs=53.6

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC----CceEEEEEEcCc-e---eEEEeee-eeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         25 AEPVANVTATVGKEALMACVVENL----REYKVAWVKMIT-Q---TILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~-~---~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ...|..+.+.+|++++|.|.....    ....+.||+... .   .+..... .......++....+. ....|.|.+++
T Consensus         5 tQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~-~~~~L~I~~~~   83 (111)
T d1j05a_           5 TQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR-TDFTLIIDPVE   83 (111)
T ss_dssp             EEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS-SEEEEEESSCC
T ss_pred             EccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC-CEEEEEEcccc
Confidence            345778889999999999987432    234599999632 1   1211111 111123355554433 45689999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      .+|+|.|.|.+.
T Consensus        84 ~~Dsa~YyCa~~   95 (111)
T d1j05a_          84 ADDVATYYCQQT   95 (111)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCccEEEeec
Confidence            999999999874

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=5.4e-08  Score=63.74  Aligned_cols=80  Identities=14%  Similarity=0.089  Sum_probs=51.5

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .|.+...+.. .|..|++|+|.|.+. .+...+.|++++.............  .+  .....+.|.++..+|+|.|+|.
T Consensus         7 kPsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~l~k~g~~~~~~~~~~~~~--~~--~~~a~F~l~~vt~~~~G~Y~C~   80 (99)
T d1ucta1           7 MPFISAKSSP-VIPLDGSVKIQCQAI-REAYLTQLMIIKNSTYREIGRRLKF--WN--ETDPEFVIDHMDANKAGRYQCQ   80 (99)
T ss_dssp             CCCEEESSCS-EEETTCCEEEEECCC-TTCSEEEEEEEETTEEEECSEECC--------CCCEEEECSCCGGGCEEEEEE
T ss_pred             CCEEEecCCC-ceeCCCeEEEEEcCC-CCCcEEEEEECCCcCceeccccccC--CC--CceEEEEecCCCHHHCceEEEE
Confidence            4555555543 588999999999865 4456778888643322221111100  00  0112789999999999999999


Q ss_pred             EeeCCC
Q psy15734        255 AVNALG  260 (314)
Q Consensus       255 a~n~~g  260 (314)
                      ..+...
T Consensus        81 y~~~~~   86 (99)
T d1ucta1          81 YRIGHY   86 (99)
T ss_dssp             EEETTT
T ss_pred             EECCCc
Confidence            988765

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.61  E-value=7.9e-08  Score=63.49  Aligned_cols=81  Identities=17%  Similarity=0.234  Sum_probs=53.0

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc---eeEEEeeeeeee--cCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT---QTILSIHHKVVT--QNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~---~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      +..|..+.+.+|++++|.|..... ...+.||+...   ..+.........  ...++.....+ ....|.|.+++.+|+
T Consensus         4 tQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~-~~~~L~I~~~~~~Ds   81 (104)
T d1yqvl1           4 TQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSGSG-TSYSLTISSMETEDA   81 (104)
T ss_dssp             EEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCCGGGC
T ss_pred             eCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEecCC-CEEEEEecccCcccC
Confidence            456788999999999999997543 33579998632   111111111111  12344444433 345899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|...
T Consensus        82 a~YyCa~~   89 (104)
T d1yqvl1          82 ATYYCQQW   89 (104)
T ss_dssp             EEEEEEEC
T ss_pred             CeEEEEec
Confidence            99999863

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.61  E-value=1.3e-07  Score=62.80  Aligned_cols=83  Identities=16%  Similarity=0.201  Sum_probs=54.7

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCC---CceEEEEEEcC-ceeE--EEeeeee--eecCcCEEEEeCCceeEEEEEeee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENL---REYKVAWVKMI-TQTI--LSIHHKV--VTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~-~~~~--~~~~~~~--~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+..++ .+.+.+|++++|.|..++.   ....+.||+.. +..+  +......  .....|+...... ....|.|.++
T Consensus         3 ~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~~-~~~~L~I~~~   80 (110)
T d1oaql_           3 VVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLIG-NKAALTITGA   80 (110)
T ss_dssp             CEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEET-TEEEEEEESC
T ss_pred             CEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeecccc-cceeeecCCC
Confidence            344444 6889999999999998642   23458999853 2211  1111111  1123467666554 3468999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|+|.|.|...
T Consensus        81 ~~~Dsa~YyCa~~   93 (110)
T d1oaql_          81 QTEDEAIYFCALW   93 (110)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CccccEeEEEEcc
Confidence            9999999999974

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.61  E-value=1.3e-07  Score=63.23  Aligned_cols=81  Identities=17%  Similarity=0.265  Sum_probs=53.7

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC-----CceEEEEEEcCc-ee---EEEeee-eeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         25 AEPVANVTATVGKEALMACVVENL-----REYKVAWVKMIT-QT---ILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~-----~~~~v~W~~~~~-~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      +.+|..+.+.+|++|+|.|..++.     ....+.||+... ..   +..... .......++.....+ ..+.|.|.++
T Consensus         5 TQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s~-~~~~L~Is~~   83 (112)
T d1mjul1           5 TQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGSG-TAFTLRISRV   83 (112)
T ss_dssp             ECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEECS-SEEEEEESSC
T ss_pred             EecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecCC-CEEEEEECCc
Confidence            355778899999999999997542     346799998632 11   111110 011123356555443 4568999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|..
T Consensus        84 ~~~DsAvYyCa~   95 (112)
T d1mjul1          84 EAEDVGVYYCLQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             cccCCceEEEEe
Confidence            999999999975

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.61  E-value=1.3e-07  Score=63.06  Aligned_cols=82  Identities=17%  Similarity=0.262  Sum_probs=54.2

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC----CceEEEEEEcC-cee---EEEeee-eeeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         25 AEPVANVTATVGKEALMACVVENL----REYKVAWVKMI-TQT---ILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~-~~~---~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      ...|..+.+.+|++|+|.|..+..    ....+.||+.. +..   +..... .......|+.....+ ..+.|.|.+++
T Consensus         5 tQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~~~-~~~~L~I~~~~   83 (111)
T d2gsia1           5 TQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSGSG-TDFTLNIHPVE   83 (111)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSCC
T ss_pred             EeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEecCC-Cchhccccccc
Confidence            345778999999999999987531    23458999963 221   111111 111123466665443 34689999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      ++|+|.|.|...
T Consensus        84 ~~DsA~YyCa~~   95 (111)
T d2gsia1          84 EEDAATYYCSHI   95 (111)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccCCceEEEEEC
Confidence            999999999864

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.61  E-value=2.2e-07  Score=60.11  Aligned_cols=76  Identities=9%  Similarity=0.013  Sum_probs=50.4

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...+..+ |..|++|+|.|.... ....+.|++++.......    ....       .......+.|.+++..|+
T Consensus         3 PKPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~----~~~~-------~~~~~a~F~i~~v~~~~~   69 (95)
T d1olla1           3 PKPFIWAEPHFM-VPKEKQVTICCQGNY-GAVEYQLHFEGSLFAVDR----PKPP-------ERINKVKFYIPDMNSRMA   69 (95)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECCT-TCCEEEEEETTEEEEEEC----CSSC-------TTCCEEEEEESSCCGGGC
T ss_pred             CCCEEEeeCCCc-ccCCCcEEEEEecCC-CccEEEEEECCCCcceeE----EccC-------CCccEEEEEEeeeecCCC
Confidence            357776667555 789999999999854 456888888543221110    0000       001112699999999999


Q ss_pred             eEEEEEEec
Q psy15734        100 GWYMCQINT  108 (314)
Q Consensus       100 G~Y~C~~~~  108 (314)
                      |.|+|...+
T Consensus        70 G~Y~C~y~~   78 (95)
T d1olla1          70 GQYSCIYRV   78 (95)
T ss_dssp             EEEEEEEEE
T ss_pred             ceEEEEeCC
Confidence            999999854

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.61  E-value=2.7e-07  Score=61.77  Aligned_cols=83  Identities=8%  Similarity=0.143  Sum_probs=53.7

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEE---Eeee--eeee--cCcCEEEEeCCceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTIL---SIHH--KVVT--QNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~---~~~~--~~~~--~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +...|....+.+|++++|.|.... ....+.|||.. +..+.   ....  ....  ...+............|.|.+++
T Consensus         2 VtQ~P~~~~~~~G~svtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~   80 (112)
T d2bnub1           2 VTQTPKFQVLKTGQSMTLQCAQDM-NHEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRSTTEDFPLRLLSAA   80 (112)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESS-CCSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSSSSBCCEEESSCC
T ss_pred             eEECCCeEEECCCCCEEEEEEEEC-CccceEecccccccCccceeeEeccCceecCccccceeEecCCCCEEEEEECCCC
Confidence            345577788999999999999854 34579999853 22111   1110  0011  12233333334445589999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      ++|+|.|.|...
T Consensus        81 ~~DsavYyCA~~   92 (112)
T d2bnub1          81 PSQTSVYFCASS   92 (112)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             HHHCEEEEEeec
Confidence            999999999875

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.60  E-value=3e-08  Score=65.89  Aligned_cols=78  Identities=15%  Similarity=0.283  Sum_probs=51.1

Q ss_pred             ceEEEcCCcEEEEEEecCCC----ceEEEEEEcCceeEEEeeeee-e--ecCcCEEEEeCCceeEEEEEeeecCCCCeEE
Q psy15734         30 NVTATVGKEALMACVVENLR----EYKVAWVKMITQTILSIHHKV-V--TQNKRVSITFNDHRSWFLHLRDVQETDRGWY  102 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~~~~~~~~~~~-~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y  102 (314)
                      .+++..|++++|+|......    ...+.|.+.+...+....... .  ...+|+.+...  ++.+|.|.+++.+|+|.|
T Consensus         3 ~Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~--g~~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           3 HVTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDIT--NNLSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEEST--TTTEEEECSCCGGGCEEE
T ss_pred             EEEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccC--CcEEEEECcCChHHCeEE
Confidence            47889999999999875422    257888885433222211111 1  11345555433  235899999999999999


Q ss_pred             EEEEecC
Q psy15734        103 MCQINTV  109 (314)
Q Consensus       103 ~C~~~~~  109 (314)
                      .|.+.+.
T Consensus        81 ~C~V~~~   87 (105)
T d1dr9a1          81 ECVVLKY   87 (105)
T ss_dssp             EEEEEEC
T ss_pred             EEEEEeC
Confidence            9999643

>d1vesa_ b.1.1.1 (A:) Novel antigen receptor 12Y-2 {Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor 12Y-2
species: Spotted wobbegong (Orectolobus maculatus) [TaxId: 168098]

Probab=98.60  E-value=1.9e-07  Score=62.54  Aligned_cols=80  Identities=15%  Similarity=0.259  Sum_probs=54.4

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec--CCceeEEecCCC-----eeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF--PASLNYWTNEKG-----DMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~-----~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      .+.+.|....+.+|++++|.|..++.  +...+.|++...     ..+....++........  ....|+|.+++.+|+|
T Consensus         2 ~V~Q~P~s~~~~~G~svtL~C~~s~~~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~Dsa   79 (113)
T d1vesa_           2 WVDQTPRTATKETGESLTINCVLRDASFELKDTGWYRTKLGSTNEQSISIGGRYVETVNKGS--KSFSLRISDLRVEDSG   79 (113)
T ss_dssp             EEEEECSEEEECTTCCEEEEEEEESCSSCCCEEEEEEEETTCCCCEECCCBTTEEEEEETTT--TEEEEEECSCCGGGCE
T ss_pred             ceEeeCCEEEEcCCCCEEEEEEECCCcccCCccceeeeeccccceeeeeecccccceeECCC--CceeeeecccccCCcc
Confidence            35667788889999999999998753  445688986321     11222333333322222  2358999999999999


Q ss_pred             EEEEEEeeC
Q psy15734        250 SYRCVAVNA  258 (314)
Q Consensus       250 ~Y~C~a~n~  258 (314)
                      .|.|.+...
T Consensus        80 ~YyCa~~~~   88 (113)
T d1vesa_          80 TYKCQAFYS   88 (113)
T ss_dssp             EEEEEEEEE
T ss_pred             eEeeeeecc
Confidence            999998653

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.60  E-value=2.9e-07  Score=62.49  Aligned_cols=83  Identities=22%  Similarity=0.350  Sum_probs=56.7

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-c---eeEEEee---eeee---ecCcCEEEEeC-CceeEEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENL--REYKVAWVKMI-T---QTILSIH---HKVV---TQNKRVSITFN-DHRSWFLHL   91 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~---~~~~~~~---~~~~---~~~~~~~~~~~-~~~~~~L~i   91 (314)
                      ..++..+++.+|++++|.|.+++.  ....+.|||.. +   +.+....   ....   ...+|+.+..+ ..+...|.|
T Consensus         5 ~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~~~~~L~i   84 (123)
T d1hxmb1           5 EQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPETSTSTLTI   84 (123)
T ss_dssp             ECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTTTEEEEEE
T ss_pred             ECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccccceeecc
Confidence            445567889999999999999764  34579999963 1   1222111   0111   12357877754 334568999


Q ss_pred             eeecCCCCeEEEEEEe
Q psy15734         92 RDVQETDRGWYMCQIN  107 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (314)
                      .+++++|+|.|.|...
T Consensus        85 ~~l~~~Dsa~YyCA~~  100 (123)
T d1hxmb1          85 HNVEKQDIATYYCALW  100 (123)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccccccCcEEEEeee
Confidence            9999999999999974

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.59  E-value=1.7e-07  Score=62.12  Aligned_cols=82  Identities=15%  Similarity=0.300  Sum_probs=55.4

Q ss_pred             CcceEEEcCCcEEEEEEecC--CCceEEEEEEcC--cee--EEEeeee----eeecCcCEEEEeC-CceeEEEEEeeecC
Q psy15734         28 VANVTATVGKEALMACVVEN--LREYKVAWVKMI--TQT--ILSIHHK----VVTQNKRVSITFN-DHRSWFLHLRDVQE   96 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~--~~~~~v~W~~~~--~~~--~~~~~~~----~~~~~~~~~~~~~-~~~~~~L~i~~~~~   96 (314)
                      ++...+.+|++++|.|.+++  .....+.|+|..  ...  +......    .....+|+.+..+ ..+.+.|.|.+++.
T Consensus         2 e~~~~~~eG~svtl~C~ys~~~~~~~~~~W~rq~pg~~~~~li~~~~~~~~~~~~~~gR~sis~d~~~~~~~lti~~L~~   81 (110)
T d1u9ka_           2 EERYDLVEGQTLTVKCPFNIMKYANSQKAWQRLPDGKEPLTLVVTQRPFTRPSEVHMGKFTLKHDPSEAMLQVQMTDLQV   81 (110)
T ss_dssp             CEEEEECTTCCEEEEEECCHHHHTTSEEEEEECCTTSCCEEEEECCSSTTSCEEEEETTEEEEEEGGGTEEEEEECSCCG
T ss_pred             CCCCcCCCCCCEEEEEEECCCCccCCcEEEEEECCCCCEEEEEecCCCceeechhhCcEEEEEEECCCCEEEEEECcccc
Confidence            45678999999999999865  245688999953  211  1111100    0111357777754 33457899999999


Q ss_pred             CCCeEEEEEEecC
Q psy15734         97 TDRGWYMCQINTV  109 (314)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (314)
                      +|+|.|.|.....
T Consensus        82 eDsa~YyCa~~~~   94 (110)
T d1u9ka_          82 TDSGLYRCVIYHP   94 (110)
T ss_dssp             GGCEEEEEEEECT
T ss_pred             CCCEEEEEEEeCC
Confidence            9999999998543

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=3.4e-07  Score=59.09  Aligned_cols=73  Identities=15%  Similarity=0.221  Sum_probs=49.4

Q ss_pred             cCccEEEEEEEee-cCCceeEEecCCCeeeecCCceeeeE-eeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734        189 VSQTVELHCHTEA-FPASLNYWTNEKGDMIITGDDYEDSR-LING-YSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       189 ~g~~~~l~C~~~g-~p~p~~~W~~~~~~~~~~~~~~~~~~-~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      .++.++|.|.+.| +|.+.+.|++++.. +... ...... ..++ |...+.|.|..   .+...|+|.+.+..-.....
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~~~-~~~~-~~~~~~~~~~g~y~v~S~L~v~~---~~~~~~tC~V~h~~l~~~~~   89 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENGEE-LNAI-NTTVSQDPETELYAVSSKLDFNM---TTNHSFMCLIKYGHLRVNQT   89 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESSCE-ECCS-EEEEEECTTTCCEEEEEEEEEET---TSCEEEEEEEEETTCCEEEE
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCCcE-eccc-ceeeEecCCCccEEEEEEEEccC---CccceEEEEEEecCCCCcEE
Confidence            4678999999987 69999999997443 3222 222222 2233 88888888863   35679999999876554444


Q ss_pred             E
Q psy15734        266 I  266 (314)
Q Consensus       266 ~  266 (314)
                      +
T Consensus        90 ~   90 (95)
T d1dr9a2          90 F   90 (95)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.59  E-value=1.4e-07  Score=60.96  Aligned_cols=88  Identities=13%  Similarity=0.135  Sum_probs=55.6

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+.. .|..|++|+|.|... .+...+.|++++...........    ..  .....+.|.++..+|+|.|+|..
T Consensus         5 PsLsa~P~~-~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~~~----~~--~~~a~F~i~~v~~~~~G~Y~C~y   76 (95)
T d1olla1           5 PFIWAEPHF-MVPKEKQVTICCQGN-YGAVEYQLHFEGSLFAVDRPKPP----ER--INKVKFYIPDMNSRMAGQYSCIY   76 (95)
T ss_dssp             CEEEEESCS-EEETTCCEEEEEECC-TTCCEEEEEETTEEEEEECCSSC----TT--CCEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeeCCC-cccCCCcEEEEEecC-CCccEEEEEECCCCcceeEEccC----CC--ccEEEEEEeeeecCCCceEEEEe
Confidence            455555533 478999999999864 33567778886443222211110    01  11238999999999999999998


Q ss_pred             eeCCCCc--eeEEEEEEE
Q psy15734        256 VNALGET--DGFIKVYVN  271 (314)
Q Consensus       256 ~n~~g~~--~~~~~l~V~  271 (314)
                      .+.....  +..+.|.|.
T Consensus        77 ~~~~~~S~~Sd~leL~VT   94 (95)
T d1olla1          77 RVGELWSEPSNLLDLVVT   94 (95)
T ss_dssp             EETTEECCCCCCEEEEEE
T ss_pred             CCCCCccCCCCCEEEEEe
Confidence            8765422  445555553

>d1i8ka_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=7.1e-08  Score=63.84  Aligned_cols=77  Identities=19%  Similarity=0.314  Sum_probs=52.0

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce--eeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD--MIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~--~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ++++.|....+.+|++++|.|.........+.|++..  ..  .+..         ..++..... +   ...+|.|.++
T Consensus         3 ~ltQsP~slsv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~rfs~~~~-~---~~~~L~I~~~   78 (106)
T d1i8ka_           3 ELTQSPASLSVATGEKVTIRCMTSTDIDDDMNWYQQKPGEPPKFLISEGNTLRPGVPSRFSSSGT-G---TDFVFTIENT   78 (106)
T ss_dssp             CEEEECSEEECCTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEE-T---TEEEEEESSC
T ss_pred             CEEeeCCEEEECCCCCEEEEEEeCCCCCccEEEEeCCCCCceEEEEeccCccccCCCcceeEeCC-C---CeeeecccCC
Confidence            3456677788999999999999877666678998632  11  1111         112221111 1   2458999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~Dsa~YyCa~~~   92 (106)
T d1i8ka_          79 LSEDVGDYYCLQSF   92 (106)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             ccccCEEEeEecCc
Confidence            99999999997654

>d1a0ql1 b.1.1.1 (L:2-108) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.59  E-value=1.5e-07  Score=62.24  Aligned_cols=76  Identities=17%  Similarity=0.288  Sum_probs=52.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---Cee-eec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---GDM-IIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~~~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +++.|....+.+|++++|.|.........+.|++..   ... +..         ..++....  ++  ....|.|.++.
T Consensus         3 ltQsP~~l~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--s~--~~~~L~I~~~~   78 (106)
T d1a0ql1           3 LTQSPSSLSASLGGKVTITCKASQDIKKYIGWYQHKPGKQPRLLIHYTSTLLPGIPSRFRGSG--SG--RDYSFSISNLE   78 (106)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEE--ET--TEEEEEECSCC
T ss_pred             eECcCCEEEECCCCCEEEEEEcCCCCCCCeEEEECCCCCcEEEEEEccccccCCCCcceEeec--CC--CEeeeEehhhc
Confidence            456677788999999999999877666678898732   111 111         11222211  11  23589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+.+
T Consensus        79 ~~DsA~YyCa~~~   91 (106)
T d1a0ql1          79 PEDIATYYCLQYY   91 (106)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCEeEEEEEeC
Confidence            9999999998754

>d1j8hd1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.59  E-value=1.9e-07  Score=62.94  Aligned_cols=81  Identities=14%  Similarity=0.209  Sum_probs=54.3

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---C-eeeec--C--------CceeeeEeeCCeeeEEEEEEee
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---G-DMIIT--G--------DDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~-~~~~~--~--------~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      .+++.+....+.+|++++|.|.........+.|++..   + ..++.  .        .++.......  .....|.|.+
T Consensus         2 ~vtQ~p~~v~~~~G~~vtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~   79 (115)
T d1j8hd1           2 SVTQLGSHVSVSEGALVLLRCNYSSSVPPYLFWYVQYPNQGLQLLLKYTSAATLVKGINGFEAEFKKS--ETSFHLTKPS   79 (115)
T ss_dssp             EEECSCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBGG--GTBCCEEESS
T ss_pred             CEEcCCCeEEEcCCCCEEEEEEeCCCCceeEEEEEccCCCcceeeeEEeecccccccCCCCEEEECCC--CCEEEEeecc
Confidence            3566778889999999999999887767789999732   1 11111  0        1111111111  1234799999


Q ss_pred             cCCCCCeEEEEEEeeCC
Q psy15734        243 ILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~  259 (314)
                      ++.+|+|.|.|.+....
T Consensus        80 ~~~~Dsa~YyCa~~~~~   96 (115)
T d1j8hd1          80 AHMSDAAEYFCAVSESP   96 (115)
T ss_dssp             CCGGGCEEEEEEEESST
T ss_pred             ccccCCccceeeecCCC
Confidence            99999999999987643

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.58  E-value=1.1e-07  Score=62.20  Aligned_cols=80  Identities=14%  Similarity=0.199  Sum_probs=52.3

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.+...+.. .|..|++|+|.|.... +...+.|++++........      ...   .........+.|.+++..|
T Consensus         5 lpkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~l~k~g~~~~~~~~------~~~---~~~~~~~a~F~l~~vt~~~   73 (99)
T d1ucta1           5 FPMPFISAKSSP-VIPLDGSVKIQCQAIR-EAYLTQLMIIKNSTYREIG------RRL---KFWNETDPEFVIDHMDANK   73 (99)
T ss_dssp             SCCCCEEESSCS-EEETTCCEEEEECCCT-TCSEEEEEEEETTEEEECS------EEC---C----CCCEEEECSCCGGG
T ss_pred             CCCCEEEecCCC-ceeCCCeEEEEEcCCC-CCcEEEEEECCCcCceecc------ccc---cCCCCceEEEEecCCCHHH
Confidence            456777777765 4889999999998754 5568899985432211100      000   0000111268999999999


Q ss_pred             CeEEEEEEecC
Q psy15734         99 RGWYMCQINTV  109 (314)
Q Consensus        99 ~G~Y~C~~~~~  109 (314)
                      +|.|+|.+.+.
T Consensus        74 ~G~Y~C~y~~~   84 (99)
T d1ucta1          74 AGRYQCQYRIG   84 (99)
T ss_dssp             CEEEEEEEEET
T ss_pred             CceEEEEEECC
Confidence            99999998653

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.58  E-value=1.4e-07  Score=63.27  Aligned_cols=82  Identities=18%  Similarity=0.338  Sum_probs=54.1

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC------CceEEEEEEcCc-e--eEEEee--eeeeecCcCEEEEeCCceeEEEEEee
Q psy15734         25 AEPVANVTATVGKEALMACVVENL------REYKVAWVKMIT-Q--TILSIH--HKVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~------~~~~v~W~~~~~-~--~~~~~~--~~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      ...|..+.+.+|++++|.|..++.      ....+.|||... .  .+....  ........++....+. ....|.|.+
T Consensus         5 tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~~s~-~~~~L~I~~   83 (113)
T d1q9ra1           5 SQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGSGSG-TDFTLTITS   83 (113)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEET-TEEEEEESS
T ss_pred             EccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEeCCC-CeEeEEecc
Confidence            455788999999999999987542      234699999632 1  111111  1111223455554433 345899999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++++|+|.|.|...
T Consensus        84 l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          84 VQAEDLAVYYCKQS   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cccCCCeEEEeccc
Confidence            99999999999864

>d1sq2n_ b.1.1.1 (N:) Novel antigen receptor (against lysozyme) {Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Novel antigen receptor (against lysozyme)
species: Nurse shark (Ginglymostoma cirratum) [TaxId: 7801]

Probab=98.58  E-value=1.3e-07  Score=63.18  Aligned_cols=80  Identities=18%  Similarity=0.288  Sum_probs=53.3

Q ss_pred             EEcCCCcceeecCccEEEEEEEeec--CCceeEEecCC---Ce-eee-cCCceeeeEeeCCeeeEEEEEEeecCCCCCeE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAF--PASLNYWTNEK---GD-MII-TGDDYEDSRLINGYSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~--p~p~~~W~~~~---~~-~~~-~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~  250 (314)
                      +.+.|....+..|++++|.|...+.  ....+.|++..   +. .+. ...++........  ....|.|.+++.+|+|.
T Consensus         2 V~Q~P~s~t~~~G~svtl~C~~s~~s~~~~~i~WYrq~~g~~~~~~~~~~gr~~~~~~~~~--~~~~L~I~~l~~~Dsa~   79 (112)
T d1sq2n_           2 VDQTPRSVTKETGESLTINCVLRDASYALGSTCWYRKKSGEGNEESISKGGRYVETVNSGS--KSFSLRINDLTVEDGGT   79 (112)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCSSCCCCEEEEEEETTSCCCEECCCBTTEEEEEETTT--TEEEEEECSCCGGGCEE
T ss_pred             CEecCCEEEEcCCCCEEEEEEECCCcccCCceEEEEeeccceeeeeeccCCcEeeEEecCC--ceeeeEecCCcCccCEE
Confidence            4456777788999999999988653  45788999732   11 111 2223333222211  23589999999999999


Q ss_pred             EEEEEeeCC
Q psy15734        251 YRCVAVNAL  259 (314)
Q Consensus       251 Y~C~a~n~~  259 (314)
                      |.|.+....
T Consensus        80 YyCA~~~~~   88 (112)
T d1sq2n_          80 YRCGLGVAG   88 (112)
T ss_dssp             EEEEECBTT
T ss_pred             EeEEEecCC
Confidence            999876543

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.57  E-value=8.3e-08  Score=64.24  Aligned_cols=82  Identities=16%  Similarity=0.251  Sum_probs=54.1

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee---e-eeecCcCEEEEeC-CceeEEEEEeeecCC
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH---K-VVTQNKRVSITFN-DHRSWFLHLRDVQET   97 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~---~-~~~~~~~~~~~~~-~~~~~~L~i~~~~~~   97 (314)
                      ..|..+++.+|++++|.|..++..  ..-+.|||... ..+.....   . ......++....+ ..+...|.|.+++.+
T Consensus         5 tQP~s~sv~~G~svtL~C~~s~~~~~~~~i~WyrQ~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~l~~~   84 (111)
T d1cd0a_           5 NQPHSVSESPGKTVTISCTRSSGNIDSNYVQWYQQRPGSAPITVIYEDNQRPSGVPDRFAGSIDRSSNSASLTISGLKTE   84 (111)
T ss_dssp             ECCSEEEECTTSCEEEEEEESSSCGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEEETTTTEEEEEECSCCGG
T ss_pred             ecCCeeEECCCCCEEEEEEECCCCccCceEEEeeeccCceeEeeeccccccCcccCCceeEeecCCCCccccccccCCcc
Confidence            345679999999999999986532  34599999632 11111100   0 0112345655543 344668999999999


Q ss_pred             CCeEEEEEEe
Q psy15734         98 DRGWYMCQIN  107 (314)
Q Consensus        98 d~G~Y~C~~~  107 (314)
                      |+|.|.|...
T Consensus        85 Dsa~YyCA~~   94 (111)
T d1cd0a_          85 DEADYYCQSY   94 (111)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCcEEEEeec
Confidence            9999999864

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.57  E-value=5.3e-08  Score=65.78  Aligned_cols=81  Identities=16%  Similarity=0.226  Sum_probs=54.0

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc----eeEEEee-eeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMIT----QTILSIH-HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~----~~~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      ..|..+.+.+|++++|.|.........+.|||...    ..+.... ........++...... ....|.|.+++++|+|
T Consensus         6 Q~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~~~~~Dsa   84 (119)
T d1f3rb2           6 QSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSGSG-TDYTLTISSLQPEDVA   84 (119)
T ss_dssp             EETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEEB-TEEEEEECSCCGGGCS
T ss_pred             ccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccCCC-CEEEEEcccCccCCCe
Confidence            45677889999999999998765556799999632    1111111 1111123355544332 3458999999999999


Q ss_pred             EEEEEEe
Q psy15734        101 WYMCQIN  107 (314)
Q Consensus       101 ~Y~C~~~  107 (314)
                      .|.|...
T Consensus        85 vYyCa~~   91 (119)
T d1f3rb2          85 TYFCYQY   91 (119)
T ss_dssp             EEEEEEE
T ss_pred             EEEeecc
Confidence            9999875

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.56  E-value=2.6e-07  Score=62.50  Aligned_cols=84  Identities=17%  Similarity=0.354  Sum_probs=56.1

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-c---eeEEEeee---ee--eecCcCEEEEeC-CceeEEEEE
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL--REYKVAWVKMI-T---QTILSIHH---KV--VTQNKRVSITFN-DHRSWFLHL   91 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~---~~~~~~~~---~~--~~~~~~~~~~~~-~~~~~~L~i   91 (314)
                      +..++..+.+.+|++++|.|.+.+.  ....+.|||.. +   +.+.....   ..  .....++.+..+ ......|.|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~~~~~~L~I   83 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPSASTSILTI   83 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCTTTEEEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccccccccccc
Confidence            4456667888999999999998653  34579999953 1   22222111   01  112346666654 334568999


Q ss_pred             eeecCCCCeEEEEEEe
Q psy15734         92 RDVQETDRGWYMCQIN  107 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (314)
                      .+++.+|+|.|.|...
T Consensus        84 ~~l~~~Dsa~YyCA~~   99 (120)
T d1ypzf1          84 YSLEEEDEAIYYCSYG   99 (120)
T ss_dssp             CSCCGGGCSEEEEEEC
T ss_pred             cccccccceeEEEEEc
Confidence            9999999999999874

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.56  E-value=1.8e-07  Score=62.86  Aligned_cols=82  Identities=17%  Similarity=0.350  Sum_probs=54.5

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEee-eeeeecCcCEEEEeC-CceeEEEEEeeecCCC
Q psy15734         25 AEPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIH-HKVVTQNKRVSITFN-DHRSWFLHLRDVQETD   98 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~-~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d   98 (314)
                      ...|..+.+.+|++++|.|...+. ...+.||+... .   .+.... ........++....+ ......|.|.+++.+|
T Consensus         4 ~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (115)
T d1ogad1           4 EQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFGDARKDSSLHITAAQPGD   82 (115)
T ss_dssp             EEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEECTTSSEEEEEESSCCGGG
T ss_pred             EeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccccccceeeeeecCCCccc
Confidence            345778999999999999998653 34799998532 1   111111 111122234444433 3346789999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|.|.+.
T Consensus        83 sa~YyCa~~   91 (115)
T d1ogad1          83 TGLYLCAGA   91 (115)
T ss_dssp             CEEEEEEEE
T ss_pred             eeeEccccc
Confidence            999999875

>d1neua_ b.1.1.1 (A:) Myelin membrane adhesion molecule P0 {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin membrane adhesion molecule P0
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.55  E-value=2.5e-07  Score=62.78  Aligned_cols=35  Identities=17%  Similarity=0.313  Sum_probs=25.7

Q ss_pred             EEEEeecCCCCCeEEEEEEeeCCCCc--eeEEEEEEE
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNALGET--DGFIKVYVN  271 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~~g~~--~~~~~l~V~  271 (314)
                      +|.|.+++.+|+|.|.|.+.+..+..  ...+.|.|.
T Consensus        82 sL~I~~v~~~DsG~Y~C~v~~~~~~~~~~~~v~L~V~  118 (119)
T d1neua_          82 SIVIHNLDYSDNGTFTCDVKNPPDIVGKTSQVTLYVF  118 (119)
T ss_dssp             CEEECSCCGGGCEEEEEEEEC----CCEEEEEEEEEE
T ss_pred             EEEECCCChHHCEEEEEEEEECCCcCceEEEEEEEEE
Confidence            89999999999999999999865433  445666654

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.55  E-value=2.2e-07  Score=62.15  Aligned_cols=83  Identities=16%  Similarity=0.282  Sum_probs=55.2

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCC-----CceEEEEEEcC-cee---EEEee-eeeeecCcCEEEEeCCceeEEEEEee
Q psy15734         24 FAEPVANVTATVGKEALMACVVENL-----REYKVAWVKMI-TQT---ILSIH-HKVVTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~-----~~~~v~W~~~~-~~~---~~~~~-~~~~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      ++.+|..+.+.+|++++|.|..++.     ....+.||+.. ++.   +.... ........++.....+ ....|.|.+
T Consensus         5 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~fs~~~~~-~~~~L~I~~   83 (113)
T d1n4xl_           5 MTQTPLYLPVSLGDQASISCRSSQTIVHNNGNTYLEWYLQKPGQSPQLLIYKVSNRFSGVPDRFSGSGSG-TDFTLKISR   83 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCCCTTSCCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEECS-SEEEEEESS
T ss_pred             EeCcCCEEEECCCCCEEEEEEeccccccCCCceEeEEEecCCCCccEEEEEecCCCccccCCCeeeeccC-CcccCccCC
Confidence            4456788999999999999998532     33579999863 211   11111 1111123466655543 446899999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|+|.|.|...
T Consensus        84 ~~~~DsavYyCa~~   97 (113)
T d1n4xl_          84 VEAEDLGIYYCFQG   97 (113)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             CCcccCEEEEEEEC
Confidence            99999999999753

>d1kcvl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=3.2e-07  Score=60.82  Aligned_cols=76  Identities=22%  Similarity=0.362  Sum_probs=52.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--C-e-eeec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--G-D-MIIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~-~-~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +++.|....+.+|++++|.|.........+.|++..  . . .+..         ..++....    ......|.|.+++
T Consensus         4 ~tQsP~~l~v~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~   79 (107)
T d1kcvl1           4 MTQSPKSMGMSVGEAVTLNCKASENVGTYVSWYQQKPGQSPVLLIYGASNRYTGVPDRFTGSG----SATDFTLTISSVQ   79 (107)
T ss_dssp             EEESCSEEEEETTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EECcCCEEeECCCCCEEEEEEecCCcCCceEEEEcccCCCCEEEEEecccccCCccceEEeec----cCCeeecEEHhhe
Confidence            456677788999999999999887776779999632  1 1 1111         11121111    1124589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        80 ~~DSa~YyCa~~~   92 (107)
T d1kcvl1          80 ADDDADYYCGQSY   92 (107)
T ss_dssp             GGGCEEEEEEECS
T ss_pred             ecCCceEEEEecC
Confidence            9999999998653

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.53  E-value=4.9e-07  Score=60.60  Aligned_cols=84  Identities=12%  Similarity=0.239  Sum_probs=54.9

Q ss_pred             eecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEeee---e----eeecCcCEEEEeCCceeEEEEEeeec
Q psy15734         24 FAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIHH---K----VVTQNKRVSITFNDHRSWFLHLRDVQ   95 (314)
Q Consensus        24 ~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~---~----~~~~~~~~~~~~~~~~~~~L~i~~~~   95 (314)
                      +...|..+.+.+|++++|.|.... ....+.|||.. +..+.....   .    ......+............|.|.+++
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~   81 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSREKKERFSLILESAS   81 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEECSSTTBCEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEeccCcEeeeEeccCc
Confidence            345677888999999999998743 34578999863 221111100   0    01112344444444445689999999


Q ss_pred             CCCCeEEEEEEec
Q psy15734         96 ETDRGWYMCQINT  108 (314)
Q Consensus        96 ~~d~G~Y~C~~~~  108 (314)
                      .+|+|.|.|.+..
T Consensus        82 ~~Dsa~YyCa~~~   94 (113)
T d1j8he1          82 TNQTSMYLCASSS   94 (113)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             cCCcccEEeeEcc
Confidence            9999999999854

>d1c5cl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.53  E-value=1.2e-07  Score=62.60  Aligned_cols=76  Identities=26%  Similarity=0.433  Sum_probs=52.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce--eeecC---------CceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD--MIITG---------DDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~--~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +++.|....+.+|++++|.|.........+.|++..  ..  .+...         .++....  .  .....|.|.+++
T Consensus         4 ltQ~P~s~~~~~G~svtl~C~~s~~~~~~~~Wyrq~~g~~~~~~~~~~~~~~~~~~~~~~~~~--~--~~~~~L~I~~l~   79 (107)
T d1c5cl1           4 LTQSPSSLSASLGERVSLTCRTSQEISGYLSWLQQKPDGTIKRLIYDATKLDSGAPKRFSGSR--S--GSDYSLTISSLE   79 (107)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEESSCC
T ss_pred             EEccCCEEEECCCCCEEEEEEeCCCCCCCEEEEEcCCCCcceeEEeccccccCCCCCceEecc--c--CCEEEEEEhhhc
Confidence            456677788999999999999887777778999732  11  11111         1111111  1  123589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+.+
T Consensus        80 ~~Dsa~YyCa~~~   92 (107)
T d1c5cl1          80 SEDFADYYCLQYA   92 (107)
T ss_dssp             GGGCSEEEEEECS
T ss_pred             ccCCeEEEEecCc
Confidence            9999999997754

>d1ospl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.52  E-value=2.4e-07  Score=61.36  Aligned_cols=77  Identities=17%  Similarity=0.264  Sum_probs=52.7

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ++++.|....+.+|++++|.|...+.....+.|++....    .+..         ..++..  ...+  ....|.|.++
T Consensus         3 ~~tQsP~~ltv~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~i~~~~~~~~~~~~~rfs~--~~~~--~~~~L~I~~~   78 (107)
T d1ospl1           3 QMSQSSSSFSVSLGDRVTITCKASEDIYSRLAWYQQKPGNAPRLLISGATSLETWVPSRFSG--SDSG--KDYTLSITSL   78 (107)
T ss_dssp             CEECCCSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEE--ECSS--SSEEEEESSC
T ss_pred             CEEeeCCEEEECCCCCEEEEEecCCCcccccEEEEcCCCccceeEEeeccccCCccccccce--ecCC--CeEEeEEccc
Confidence            345677788899999999999988766667899973211    1111         112222  1111  2358999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      ..+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1ospl1          79 QTEDVATYFCQQYW   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             ccccCCcEEEeecc
Confidence            99999999998754

>d1i9ea_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.52  E-value=1.4e-07  Score=63.57  Aligned_cols=78  Identities=13%  Similarity=0.260  Sum_probs=51.8

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-C---eeeec--CC--------ceeeeEeeCCeeeEEEEEEeec
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-G---DMIIT--GD--------DYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-~---~~~~~--~~--------~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +.+++....+.+|++++|.|.......+.+.|++-. +   ..+..  ..        .........+  ....|.|.++
T Consensus         3 V~Q~~~~v~v~~G~svtl~C~~~~~~~~~~~Wyrq~pg~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~~   80 (115)
T d1i9ea_           3 VTQPDARVTVSEGASLQLRCKYSYSATPYLFWYVQYPRQGLQLLLKYYSGDPVVQGVNGFEAEFSKSN--SSFHLRKASV   80 (115)
T ss_dssp             EECCCSEEEEETTSCEEECCEEECSSCCEEEEEEECTTSCCEEEEEECSSCSEEECGGGCEEECBTTT--TBCCEEESSC
T ss_pred             EEcCCCeEEECCCCCEEEEEEEcCCCCCCEEEEEECCCCceeeeeeeccceeccccCcceeEEEeCcC--CEEEEecccc
Confidence            566777889999999999999887667778888621 1   11111  01        1111111111  2348999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|.+..
T Consensus        81 ~~~Dsg~YyCa~~~   94 (115)
T d1i9ea_          81 HWSDSAVYFCAVSG   94 (115)
T ss_dssp             CGGGCEEEEEEEEE
T ss_pred             cccccceecccccC
Confidence            99999999998754

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.50  E-value=2.5e-07  Score=61.99  Aligned_cols=82  Identities=12%  Similarity=0.165  Sum_probs=52.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCc-e---eEEEeeee-e---eecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMIT-Q---TILSIHHK-V---VTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~-~---~~~~~~~~-~---~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      ..|..+.+.+|++++|.|.... ....+.|||... .   .+...... .   .....+............|.|.+++++
T Consensus         3 QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~   81 (112)
T d2cdeb1           3 QTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARPS   81 (112)
T ss_dssp             EECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCTT
T ss_pred             ECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeecccccc
Confidence            4567788999999999999754 345799999642 1   11111000 0   011123333333344568999999999


Q ss_pred             CCeEEEEEEec
Q psy15734         98 DRGWYMCQINT  108 (314)
Q Consensus        98 d~G~Y~C~~~~  108 (314)
                      |+|.|.|.+..
T Consensus        82 Dsa~YyCA~~~   92 (112)
T d2cdeb1          82 HTSQYLCASSE   92 (112)
T ss_dssp             TCSEEEEEEEC
T ss_pred             ccccEEEEEec
Confidence            99999998753

>d1akjd_ b.1.1.1 (D:) CD8 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.50  E-value=1.7e-07  Score=62.98  Aligned_cols=79  Identities=18%  Similarity=0.187  Sum_probs=51.4

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecC-CceeEEecCCC----e-e-ee-c-CC---------ceeeeEeeCCeeeEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEKG----D-M-II-T-GD---------DYEDSRLINGYSCHMTL  238 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~~----~-~-~~-~-~~---------~~~~~~~~~~~~~~s~L  238 (314)
                      .+.+.|....+.+|++++|.|.+.+.. ...+.|++...    . + ++ . ..         +.+++.....  ....|
T Consensus         2 q~~~sP~~~t~~~G~~vtL~C~~~~~~~~~~i~WyrQ~~g~~~~~~~~i~~~~~~~~~~~~~~~~rfs~~~~~--~~~~L   79 (114)
T d1akjd_           2 QFRVSPLDRTWNLGETVELKCQVLLSNPTSGCSWLFQPRGAAASPTFLLYLSQNKPKAAEGLDTQRFSGKRLG--DTFVL   79 (114)
T ss_dssp             CEEEECCSCCCCTTCCEEEEEEECCSSCCSCEEEEEECSSTTCCCEEEEEESSSCCEECTTCCTTTEEEEEET--TEEEE
T ss_pred             CeeECCCcEeccCCCcEEEEEEeCCCcCCCCEEEEEECCCCCcEEEEEEecCCCeeEcCCCCCCcEEEEECCC--CChhc
Confidence            356677788899999999999986643 45688987331    1 1 11 0 00         0111111111  13589


Q ss_pred             EEeecCCCCCeEEEEEEee
Q psy15734        239 KIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n  257 (314)
                      .|.+++.+|+|.|.|.+..
T Consensus        80 ~I~~l~~~Dsg~YyCa~~~   98 (114)
T d1akjd_          80 TLSDFRRENEGYYFCSALS   98 (114)
T ss_dssp             EESSCCGGGCEEEEEEEEE
T ss_pred             EEccCCCCCCEEEeEeEcC
Confidence            9999999999999998764

>d2ij0c1 b.1.1.1 (C:1-117) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.49  E-value=3.4e-07  Score=61.87  Aligned_cols=81  Identities=17%  Similarity=0.263  Sum_probs=54.4

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC---eeee-c--------------CCceeeeEeeCCeeeEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG---DMII-T--------------GDDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~---~~~~-~--------------~~~~~~~~~~~~~~~~s~L  238 (314)
                      .+.+.|....+.+|++++|.|...+.....+.|++...   ..++ .              ..++...  ... .....|
T Consensus         3 ~v~Q~P~~~~~~~G~~v~L~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~f~~~--~~~-~~~~~L   79 (118)
T d2ij0c1           3 VVSQHPSMVIVKSGTSVKIECRSLDTNIHTMFWYRQFPKQSLMLMATSHQGFNAIYEQGVVKDKFLIN--HAS-PTLSTL   79 (118)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEECSSCCSEEEEEEECTTSCEEEEEEEETTSCCEECTTCCTTTEEEE--ECS-SSEEEE
T ss_pred             cEEEcCCeEEEcCCCCEEEEEEEcCCcccEEEEEEEcccccceeeeeccccccceeccccccccceee--ccc-cccccc
Confidence            35666777789999999999998877677889997321   1111 0              0111111  111 124589


Q ss_pred             EEeecCCCCCeEEEEEEeeCCC
Q psy15734        239 KIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .|.++..+|+|.|.|.+....+
T Consensus        80 ~i~~~~~~Dsa~YyCa~~~~~~  101 (118)
T d2ij0c1          80 TVTSAHPEDSGFYVCSALAGSG  101 (118)
T ss_dssp             EECSCCGGGCEEEEEEEECSSC
T ss_pred             cccccccccCceEEEEEecCCC
Confidence            9999999999999998865443

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.48  E-value=3e-07  Score=61.26  Aligned_cols=77  Identities=17%  Similarity=0.314  Sum_probs=51.1

Q ss_pred             ceEEEcCCcEEEEEEecCC----CceEEEEEEcCc-ee---EEEeee---eeee--cCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         30 NVTATVGKEALMACVVENL----REYKVAWVKMIT-QT---ILSIHH---KVVT--QNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~-~~---~~~~~~---~~~~--~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ...+.+|++++|.|.+++.    ....+.|+|... +.   +.....   ....  ..+|+.+..+.. +...|.|.+++
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~~~~~L~i~~l~   88 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASKKQVVLTLTNLD   88 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTTTEEEEEEESCC
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceecccccceeeeeEEeee
Confidence            4456779999999998763    225789998632 11   211110   1111  145888776543 34689999999


Q ss_pred             CCCCeEEEEEE
Q psy15734         96 ETDRGWYMCQI  106 (314)
Q Consensus        96 ~~d~G~Y~C~~  106 (314)
                      .+|++.|.|..
T Consensus        89 ~eDsAvYyCAr   99 (120)
T d2agjh1          89 PVDTATYYCAR   99 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             eccceEEeeEe
Confidence            99999999975

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=98.48  E-value=4.1e-07  Score=60.37  Aligned_cols=79  Identities=15%  Similarity=0.365  Sum_probs=53.2

Q ss_pred             CcceEEEcCCcEEEEEEecCC----CceEEEEEEcCc-eeEEEeeee------ee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         28 VANVTATVGKEALMACVVENL----REYKVAWVKMIT-QTILSIHHK------VV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~-~~~~~~~~~------~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      .....+.+|+++.|.|.+++.    ....+.|+|... ..++-....      .+  ...+|+.+..+.. +...|.|.+
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~n~~~L~~~s   86 (120)
T d1ai1h1           7 SGPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSLNKFFIQLIS   86 (120)
T ss_dssp             ECCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTTTEEEEEESS
T ss_pred             ECCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceeccccccceeecceee
Confidence            345567889999999999874    335789998642 222111100      00  1135888877544 346799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|.-
T Consensus        87 L~~eDtAvYYCAr   99 (120)
T d1ai1h1          87 VTNEDTAMYYCSR   99 (120)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             eeccceeEEEEEe
Confidence            9999999999975

>d1mexl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=4e-07  Score=60.22  Aligned_cols=77  Identities=21%  Similarity=0.397  Sum_probs=52.2

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +++++|....+.+|++++|.|.....-...+.|++...    ..+..         ..++....  .+  ....|.|.++
T Consensus         3 ~ltQ~p~~l~~~~G~svtl~C~~s~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~rfs~~~--~~--~~~~L~I~~~   78 (107)
T d1mexl1           3 VMTQSQKFMSTSLGNRVSVTCKASQNVGTNVAWFQQKPGQSPKTLIYSASYRYSGVPDRFTGSG--SG--TDFTLTINNV   78 (107)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ET--TEEEEEESSC
T ss_pred             cEEcCCCeEEECCCCCEEEEEEeCCCCCCceEEEeccCCcccEEEEEeccccccccCCCeeecC--CC--Ceeeeeechh
Confidence            35677788889999999999998766556789997321    11111         11122111  11  2358999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1mexl1          79 QSEDLAEYFCQQYN   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             heecceeEEEeECC
Confidence            99999999997653

>d1jhll_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.48  E-value=4e-07  Score=60.23  Aligned_cols=78  Identities=24%  Similarity=0.298  Sum_probs=52.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeecCC-------ceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIITGD-------DYEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~~~-------~~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      +++.|....+.+|++++|.|.........+.|++....    .+....       ........++  ....|.|.+++.+
T Consensus         4 vtQ~P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~--~~~~L~i~~l~~~   81 (108)
T d1jhll_           4 LTQSPSYLVASPGETITINCRASKSISKSLAWYQEKPGKTNNLLIYSGSTLQSGIPSRFSGSGSG--TDFTLTISSLEPE   81 (108)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEESS--SEEEEEECSCCTT
T ss_pred             EEccCCeEEecCCCCEEEEEEccCCcCCceEEEEccccCCCeEEEEeeccccCCccccccccCCC--CEEEeEeeeeEec
Confidence            45667778899999999999998766667888864321    111111       1111111121  2458999999999


Q ss_pred             CCeEEEEEEee
Q psy15734        247 QFGSYRCVAVN  257 (314)
Q Consensus       247 d~G~Y~C~a~n  257 (314)
                      |+|.|.|.+.+
T Consensus        82 Dsa~YyCA~~~   92 (108)
T d1jhll_          82 DFAMYICQQHN   92 (108)
T ss_dssp             CCSEEEEEECS
T ss_pred             cceEEEEeeCC
Confidence            99999997654

>d2ak4d1 b.1.1.1 (D:1-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.48  E-value=5.8e-07  Score=60.34  Aligned_cols=82  Identities=15%  Similarity=0.216  Sum_probs=53.5

Q ss_pred             eEEcCCCcceeecCccEEEEEEEee-cCCceeEEecCC--Ce-e-ee--cCC--------ceeeeEeeCCeeeEEEEEEe
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEK--GD-M-II--TGD--------DYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~--~~-~-~~--~~~--------~~~~~~~~~~~~~~s~L~i~  241 (314)
                      .++..+....+.+|++|+|.|.... .....+.|++..  +. . +.  ...        +........  .....|.|.
T Consensus         2 ~VtQ~~~~v~v~~G~~VtL~C~~~~~~~~~~~~Wyrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~   79 (114)
T d2ak4d1           2 KVTQAQTEISVVEKEDVTLDCVYETRDTTYYLFWYKQPPSGELVFLIRRNSFDEQNEISGRYSWNFQKS--TSSFNFTIT   79 (114)
T ss_dssp             EEECCCCEEEEETTCCEEECCEEECSCSSCEEEEEEECTTCCCEEEEEEETTSCSEEEETTEEEEEETT--TTEEEEEES
T ss_pred             cEEecCCeEEEeCCCCEEEEEEEcCCCcCccEEEEEccccCcceEeeeEeeeeecCCCCcceEEEEcCC--CCEEEEeec
Confidence            4567778888999999999998754 345567898732  11 1 11  111        111111111  124589999


Q ss_pred             ecCCCCCeEEEEEEeeCCC
Q psy15734        242 SILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +++.+|+|.|.|.+....+
T Consensus        80 ~~~~~Dsg~YyCa~~~~~~   98 (114)
T d2ak4d1          80 ASQVVDSAVYFCALSGFYN   98 (114)
T ss_dssp             SCCGGGCEEEEEEEECSBT
T ss_pred             ccccccCCCceEeCCCCCC
Confidence            9999999999998876554

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.47  E-value=4.4e-07  Score=61.24  Aligned_cols=80  Identities=15%  Similarity=0.207  Sum_probs=49.0

Q ss_pred             CcceEEEcCCcEEEEEEecCC---CceEEEEEEcCc-ee--EEEeeee---e-eecCcCEEEEeCCceeEEEEEeeecCC
Q psy15734         28 VANVTATVGKEALMACVVENL---REYKVAWVKMIT-QT--ILSIHHK---V-VTQNKRVSITFNDHRSWFLHLRDVQET   97 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~---~~~~v~W~~~~~-~~--~~~~~~~---~-~~~~~~~~~~~~~~~~~~L~i~~~~~~   97 (314)
                      |..+.+.+|++++|.|.....   ....+.|||... +.  +......   . ...+.+............|.|.+++.+
T Consensus         6 P~~~~~~~g~~v~L~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~   85 (117)
T d1dqta_           6 PSVVLASSHGVASFPCEYSPSHNTDEVRVTVLRQTNDQMTEVCATTFTEKNTVGFLDYPFCSGTFNESRVNLTIQGLRAV   85 (117)
T ss_dssp             CSEEECCTTSCEEEEEEEESCCTTCEEEEEEEEECSSCEEEEEEEEECSSSBEECTTCTTEEEEEETTEEEEEECSCCGG
T ss_pred             CCEEEEcCCCcEEEEEECccCCcccceeEEEEEeCCCCCcEEEEEEeCCcccccCCCCcEEEEeCCCCEEEEEhhcCccc
Confidence            567788999999999998532   234688999642 21  1111100   0 011112211222223458999999999


Q ss_pred             CCeEEEEEEe
Q psy15734         98 DRGWYMCQIN  107 (314)
Q Consensus        98 d~G~Y~C~~~  107 (314)
                      |+|.|.|.+.
T Consensus        86 Dsa~YyCa~~   95 (117)
T d1dqta_          86 DTGLYLCKVE   95 (117)
T ss_dssp             GCEEEEEEEE
T ss_pred             cCEeEEEEEe
Confidence            9999999874

>d1op3k1 b.1.1.1 (K:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.47  E-value=2.9e-07  Score=60.80  Aligned_cols=76  Identities=20%  Similarity=0.367  Sum_probs=52.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +++.|....+.+|++++|.|..++.-...+.|++...    ..+...         .++....  +  .....|.|.+++
T Consensus         3 ltQ~P~sl~~~~G~svtL~C~~~~~~~~~~~WYrq~~g~~p~~l~~~~~~~~~~~~~~f~~~~--~--~~~~~L~I~~~~   78 (106)
T d1op3k1           3 MTQSPSTLSASVGDTITITCRASQSIETWLAWYQQKPGKAPKLLIYKASTLKTGVPSRFSGSG--S--GTEFTLTISGLQ   78 (106)
T ss_dssp             EEEECSEEEECTTCEEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--E--TTEEEEEEESCC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCCCCCcEEEEecCCCCCCEEEEEccccCCCCcCCceeeec--c--CCEEEEEEcccc
Confidence            4566778889999999999998776667788987431    111111         1222211  1  124589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        79 ~~Dsa~YyCa~~~   91 (106)
T d1op3k1          79 FDDFATYHCQHYA   91 (106)
T ss_dssp             GGGCSEEEEEEEC
T ss_pred             ccCCCcEeeeeCC
Confidence            9999999998654

>d1u3ha1 b.1.1.1 (A:2-116) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.46  E-value=3e-07  Score=61.39  Aligned_cols=78  Identities=15%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+.|....+.+|++++|.|..+......+.|++...    ..+..         ..+........  .....|.|.++.
T Consensus         2 V~Q~P~~~~~~~G~~vtl~C~~~~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~   79 (110)
T d1u3ha1           2 VRQSPQSLTVWEGETAILNCSYENSAFDYFPWYQQFPGEGPALLISILSVSDKKEDGRFTIFFNKR--EKKLSLHIADSQ   79 (110)
T ss_dssp             EECSCSSEEEETTSCEEEEEEECCTTEEEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETG--GGEEEEEESSCC
T ss_pred             cEecCCEEEEcCCCCEEEEEEecCCCCcEEEEEeeccccceeeeeeeccccccccccceeEEECCC--CCeeEeEeccCC
Confidence            3456677789999999999998876666788997421    11110         01111111111  124589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        80 ~~Dsa~YyCa~~~   92 (110)
T d1u3ha1          80 PGDSATYFCAASA   92 (110)
T ss_dssp             TTSCSEEEECCEE
T ss_pred             CCCceeEeeeecC
Confidence            9999999998764

>d1j1pl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.46  E-value=6.3e-07  Score=59.32  Aligned_cols=31  Identities=23%  Similarity=0.448  Sum_probs=23.3

Q ss_pred             cceeEEecCceEEEEEEecccCCCceEEEcC
Q psy15734        132 STDVVVREGTEVTLECSAVGYPEPYVAWRRE  162 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~  162 (314)
                      |..+.+.+|++++|.|.........+.|++.
T Consensus         8 p~~l~v~~G~~vtL~C~~~~~~~~~~~WYrq   38 (107)
T d1j1pl_           8 PATLSVTPGNSVSLSCRASQSIGNNLHWYQQ   38 (107)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCeEEECCCCCEEEEEEecCCCCcceEEEEe
Confidence            3566678899999999876544567899973

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.46  E-value=4.3e-07  Score=60.54  Aligned_cols=81  Identities=17%  Similarity=0.253  Sum_probs=52.6

Q ss_pred             ecCCcceEEEcCCcEEEEEEecC-----CCceEEEEEEcC-ceeE--EEee-e-eeeecCcCEEEEeCCceeEEEEEeee
Q psy15734         25 AEPVANVTATVGKEALMACVVEN-----LREYKVAWVKMI-TQTI--LSIH-H-KVVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~-----~~~~~v~W~~~~-~~~~--~~~~-~-~~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      +..|..+.+.+|++|+|.|..+.     .....+.||+.. +..+  +... . .......++.....+ ..+.|.|.++
T Consensus         5 TQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~~~~-~~~~L~I~~~   83 (112)
T d1ncwl1           5 TQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGSGSG-TDFTLKISRV   83 (112)
T ss_dssp             EEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEEEET-TEEEEEESSC
T ss_pred             eCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEeeCCC-CEEEEEECcc
Confidence            34577899999999999998643     223569999863 2211  1111 1 011112455544433 3458999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +++|+|.|.|..
T Consensus        84 ~~eDsAvYYC~~   95 (112)
T d1ncwl1          84 EAEDLGVYYCWQ   95 (112)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcCEeEEEEc
Confidence            999999999965

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=98.45  E-value=9e-07  Score=57.48  Aligned_cols=80  Identities=13%  Similarity=0.054  Sum_probs=49.4

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCce-eeeEeeCC-eeeEEEEEEeecCCCCCeE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDY-EDSRLING-YSCHMTLKIRSILSHQFGS  250 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~s~L~i~~~~~~d~G~  250 (314)
                      ||.+.+-+.. .+..|+.++|.|.+.|+-+  ..+.|++++.... ..... ......++ |...+.|.+..   ++.+.
T Consensus         3 pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng~~v~-~~~~~t~~~~~~dgtf~~~s~l~v~~---~~~~~   77 (100)
T d1muja1           3 APQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNSKSVA-DGVYETSFFVNRDYSFHKLSYLTFIP---SDDDI   77 (100)
T ss_dssp             CCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESSSBCC-SSEEECCCEECTTSCEEEEEEEEECC---CTTCC
T ss_pred             CCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCCeecc-CCceeeeeEECCCCCEEEEEEeEEcC---CCCCE
Confidence            4444443222 3567889999999999744  4778999754332 22111 11223333 77777777754   45668


Q ss_pred             EEEEEeeCC
Q psy15734        251 YRCVAVNAL  259 (314)
Q Consensus       251 Y~C~a~n~~  259 (314)
                      |+|++....
T Consensus        78 ytC~V~H~s   86 (100)
T d1muja1          78 YDCKVEHWG   86 (100)
T ss_dssp             EEEEEECTT
T ss_pred             EEEEEEECC
Confidence            999999864

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.45  E-value=2e-06  Score=54.97  Aligned_cols=71  Identities=15%  Similarity=0.192  Sum_probs=49.8

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...|..+ |..|++|+|.|.... ....+.|+|++.......             .. ......+.|.+++..|+
T Consensus         3 pkPsLsa~P~~~-V~~G~~VTL~C~~~~-~~~~f~L~Keg~~~~~~~-------------~~-~~~~a~F~i~~v~~~~~   66 (93)
T d1olla2           3 DTPTLSVHPGPE-VISGEKVTFYCRLDT-ATSMFLLLKEGRSSHVQR-------------GY-GKVQAEFPLGPVTTAHR   66 (93)
T ss_dssp             CCCEEEEESCSE-EETTCEEEEEEECSS-SCSEEEEEEESSSCEEEE-------------EE-CSSEEEEEEEECCGGGC
T ss_pred             CCCEEEEeCCCc-ccCCCcEEEEECCCC-CCCEEEEEECCCccceee-------------cC-CCceeEEEecccChhcC
Confidence            467776667554 889999999999854 456899999654322110             00 11122699999999999


Q ss_pred             eEEEEEE
Q psy15734        100 GWYMCQI  106 (314)
Q Consensus       100 G~Y~C~~  106 (314)
                      |.|+|..
T Consensus        67 G~Y~C~~   73 (93)
T d1olla2          67 GTYRCFG   73 (93)
T ss_dssp             EEEEEEC
T ss_pred             ceEEEEe
Confidence            9999975

>d3cx5k1 b.1.1.1 (K:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.45  E-value=1.9e-07  Score=61.91  Aligned_cols=76  Identities=18%  Similarity=0.273  Sum_probs=52.3

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ++++.|....+.+|++++|.|.........+.|++....    .+..         ..++......    ....|.|.++
T Consensus         3 ~ltQsP~s~~~~~G~~vtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~f~~~~~~----~~~~L~I~~~   78 (107)
T d3cx5k1           3 ELTQTPVSLAASLGDRVTISCRASQDINNFLNWYQQKPDGTIKLLIYYTSRLHAGVPSRFSGSGSG----TDYSLTISNL   78 (107)
T ss_dssp             CEEEESTTCCBCSSSCCEEEEEESSCCTTCEEEEEECTTSCEEEEEETTTEECTTCCTTCCCEEET----TEEEEECSCC
T ss_pred             CEECcCCEEEECCCCCEEEEEEcCCCcCCCeEEEEcCCCCcceEEEEeecccCCCcCCCEEEEccC----CEEEEEEeEe
Confidence            355667778899999999999988777777899964311    1111         1112211111    2358999999


Q ss_pred             CCCCCeEEEEEEe
Q psy15734        244 LSHQFGSYRCVAV  256 (314)
Q Consensus       244 ~~~d~G~Y~C~a~  256 (314)
                      +.+|+|.|.|.+.
T Consensus        79 ~~~Dsa~YyCa~~   91 (107)
T d3cx5k1          79 EPEDIATYFCQHH   91 (107)
T ss_dssp             CSCCCSEEEEEEC
T ss_pred             eecCCCcEEeeeC
Confidence            9999999999764

>d1dr9a1 b.1.1.1 (A:1-105) CD80, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD80, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=3.4e-07  Score=60.58  Aligned_cols=77  Identities=18%  Similarity=0.276  Sum_probs=48.5

Q ss_pred             ceeecCccEEEEEEEeecCC----ceeEEecCCCeeeecC-Cce--------eeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        185 EGAFVSQTVELHCHTEAFPA----SLNYWTNEKGDMIITG-DDY--------EDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~~~~~-~~~--------~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      +.+..|++++|.|..+....    -.+.|.+++....... ...        +......+   ..+|.|.+++.+|+|.|
T Consensus         4 Vt~~~G~~a~L~C~~~~~~~~~~~~~v~w~~~~~~v~~~~~~~~~~~~~~~~r~~~~~~g---~~sL~I~~v~~~D~G~Y   80 (105)
T d1dr9a1           4 VTKEVKEVATLSCGHNVSVEELAQTRIYWQKEKKMVLTMMSGDMNIWPEYKNRTIFDITN---NLSIVILALRPSDEGTY   80 (105)
T ss_dssp             EEEETTSCEEECCSCCCCTTHHHHCEEEEEETTEEEEEEETTEEEECHHHHTTEEEESTT---TTEEEECSCCGGGCEEE
T ss_pred             EEEEeCCCEEEEEEECCcccceeEEEEEEEecceEEEEEEeccceeecceeeeeeeccCC---cEEEEECcCChHHCeEE
Confidence            46789999999998764322    3557877643322111 111        11111111   23899999999999999


Q ss_pred             EEEEeeCCCCcee
Q psy15734        252 RCVAVNALGETDG  264 (314)
Q Consensus       252 ~C~a~n~~g~~~~  264 (314)
                      .|.+.+..+....
T Consensus        81 ~C~V~~~~~~~~~   93 (105)
T d1dr9a1          81 ECVVLKYEKDAFK   93 (105)
T ss_dssp             EEEEEECCTTSCE
T ss_pred             EEEEEeCCCCCeE
Confidence            9999876555533

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.44  E-value=1.1e-06  Score=57.81  Aligned_cols=81  Identities=20%  Similarity=0.333  Sum_probs=55.5

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEE---Eee----eee--eecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTIL---SIH----HKV--VTQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~---~~~----~~~--~~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .+.....+++|+++.|.|.+++.  ....+.|+|... +.++   ...    ...  ....+|+.+..+.. +...|.|.
T Consensus         4 ~esg~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewl~~i~~~~~~~~y~~~~kgRftiS~D~s~~t~~L~m~   83 (117)
T d1um5h1           4 QQSGPVLVKPGGSVKMSCKASEYTLTSYLFQWVKQKSGQGLEWIGYIYPYNGGTRYNEKFRGKATLTSDKSSNTAYLELS   83 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEESSCCCSCCEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTCEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEccccCCCCcCccceeCCCccceeeeecCCccCccccccceeeeEEEEeccCceeEeeccc
Confidence            34556678899999999999874  446899999642 2221   110    000  11246888876543 44579999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|..
T Consensus        84 sL~~eDtAvYYCAr   97 (117)
T d1um5h1          84 SLTSEDSAVYYCAR   97 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEee
Confidence            99999999999975

>d1hkfa_ b.1.1.1 (A:) NK cell activating receptor NKP44 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: NK cell activating receptor NKP44
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.44  E-value=1.4e-06  Score=57.75  Aligned_cols=76  Identities=14%  Similarity=0.216  Sum_probs=47.5

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e---eeec---------CCceeeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D---MIIT---------GDDYEDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~---~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      +...+.+|++++|.|......  ...+.|++... .   .+..         ..++.+.  .+.......|.|.+++.+|
T Consensus         4 ~~v~~~~G~svtl~C~~~~~~~~~~~~~W~r~~~~~~~~~l~~~~~~~~~~~~~r~~~~--~~~~~~~~~L~I~~l~~~D   81 (108)
T d1hkfa_           4 QVLQSVAGQTLTVRCQYPPTGSLYEKKGWCKEASALVCIRLVTSSKPRTMAWTSRFTIW--DDPDAGFFTVTMTDLREED   81 (108)
T ss_dssp             EEEEECTTCCEEEEEECCCCTTCCCEEEEEEEEETTEEEEEEEECSTTCCBCSTTEEEE--EETTTTEEEEEECSCCGGG
T ss_pred             EEEEEcCCCCEEEEEEECCCCCCCCEEEEEEeCCCCCcEEeeeccCccccceeeeEeee--eeCCCCEEEEEEhhhCCCC
Confidence            445788999999999875432  34567987321 1   1110         1111121  1111234689999999999


Q ss_pred             CeEEEEEEeeCCC
Q psy15734        248 FGSYRCVAVNALG  260 (314)
Q Consensus       248 ~G~Y~C~a~n~~g  260 (314)
                      +|.|.|.+.....
T Consensus        82 sG~Y~C~v~~~~~   94 (108)
T d1hkfa_          82 SGHYWCRIYRPSD   94 (108)
T ss_dssp             CEEEEEEEECTTT
T ss_pred             CEEEEEEEecCCC
Confidence            9999999875443

>d1d5il1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.44  E-value=3.6e-07  Score=60.46  Aligned_cols=77  Identities=21%  Similarity=0.325  Sum_probs=52.3

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ++++.|....+.+|++++|.|.........+.|++...    ..+...         .++....  ++  ....|.|.++
T Consensus         3 ~~tQ~P~sl~~~~G~svtl~C~~s~~~~~~~~WYrq~pg~~~~~l~~~~~~~~~~~~~rf~~~~--~~--~~~~L~I~~~   78 (107)
T d1d5il1           3 KMTQSPSSMYASLGERVTITCKASQDINSYLSWFQQKPGKSPKTLIYRANRLVDGVPSRFSGSG--SG--QDYSLTISSL   78 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEE--ET--TEEEEEESSC
T ss_pred             CEEeeCCEEEECCCCCEEEEEEcCCCCCCccceeEeccccCeEEEEEeccccccCcCCceeecc--cC--CEEEcccccc
Confidence            34566777789999999999998777777788986421    111111         1121111  11  2358999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|.+..
T Consensus        79 ~~~Dsa~YyCa~~~   92 (107)
T d1d5il1          79 EYEDMGIYYCLQYD   92 (107)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             CCcCCEEEEeeecc
Confidence            99999999997654

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.43  E-value=5.6e-07  Score=59.28  Aligned_cols=80  Identities=18%  Similarity=0.353  Sum_probs=53.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+.+|++++|.|.+++.  ....+.|+|... +.++-...       ...  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~~t~~L~i~~   85 (115)
T d1f3dh1           6 QSGPELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSSSTAFMHLNS   85 (115)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCceeeEeeeee
Confidence            3344568889999999999875  346799998632 22211100       001  1135787776543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|..
T Consensus        86 l~~eDtAvYYCAr   98 (115)
T d1f3dh1          86 LTFEDSAVYYCAN   98 (115)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCcCCcEEEEEec
Confidence            9999999999975

>d1fo0a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.43  E-value=6.1e-07  Score=60.36  Aligned_cols=81  Identities=16%  Similarity=0.239  Sum_probs=53.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEee-cCCceeEEecCC---Cee-eec--C--------CceeeeEeeCCeeeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEA-FPASLNYWTNEK---GDM-IIT--G--------DDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~---~~~-~~~--~--------~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +++.+....+.+|++|+|.|..+. .....+.|++..   +.. ++.  .        .++.......  .....|.|.+
T Consensus         2 VtQ~p~~v~~~~G~~Vtl~C~~~~~~~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~   79 (115)
T d1fo0a_           2 VTQTQTSISVMEKTTVTMDCVYETQDSSYFLFWYKQTASGEIVFLIRQDSYKKENATVGHYSLNFQKP--KSSIGLIITA   79 (115)
T ss_dssp             EECCCCEEEEETTCCEEECCEECCCCSSCEEEEEEECTTCCEEEEEEEETTCCSCCEETTEEEEEEGG--GTEEEEEECS
T ss_pred             eEccCCEEEEcCCCCEEEEEEEcCCCCCCCCEEEEeCCCCCCEEEEEEecceeecccCCceEEEEecc--CCEEEEEECC
Confidence            456777888999999999998754 445568898732   111 110  0        1122222111  1245899999


Q ss_pred             cCCCCCeEEEEEEeeCCC
Q psy15734        243 ILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~g  260 (314)
                      ++.+|+|.|.|.+....+
T Consensus        80 ~~~~Dsa~YyCa~~~~~~   97 (115)
T d1fo0a_          80 TQIEDSAVYFCAMRGDYG   97 (115)
T ss_dssp             CCGGGCEEEEEEEECCCT
T ss_pred             CCccccccccceeecCCC
Confidence            999999999998875543

>d1bd2d1 b.1.1.1 (D:1-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.43  E-value=7e-07  Score=59.60  Aligned_cols=78  Identities=14%  Similarity=0.190  Sum_probs=53.0

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---Ce-eeec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---GD-MIIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~~-~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +...+....+.+|++++|.|.........+.|++..   +. .++.         ..++.......  ....+|.|.++.
T Consensus         3 v~Q~p~s~~~~~G~svtl~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~--~~~~~L~I~~~~   80 (111)
T d1bd2d1           3 VKQNSPSLSVQEGRISILNCDYTNSMFDYFLWYKKYPAEGPTFLISISSIKDKNADGRFTVFLNKS--AKHLSLHIVPSQ   80 (111)
T ss_dssp             EECCCSEEEEETTSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEEETTCSEEEETTEEEEEETT--TTEEEEEESSCC
T ss_pred             eEccCCEEEEcCCCCEEEEEEeCCCCCCeEEEEEECCCCcceeeeeeeceeccccCCcceEEEEcc--CCEEEEEECCCc
Confidence            456677778999999999999887777778898732   11 1110         11222221111  235699999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCa~~~   93 (111)
T d1bd2d1          81 PGDSAVYFCAAME   93 (111)
T ss_dssp             GGGCEEEEEEEES
T ss_pred             ccccEEEEeeccC
Confidence            9999999997763

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.43  E-value=4.2e-07  Score=61.46  Aligned_cols=81  Identities=15%  Similarity=0.187  Sum_probs=49.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC---ceEEEEEEcCcee----EEEeeeeee---ecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         27 PVANVTATVGKEALMACVVENLR---EYKVAWVKMITQT----ILSIHHKVV---TQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~~~~----~~~~~~~~~---~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .|..+.+.+|+.++|.|......   ...+.|||.....    +........   ..+.+............|.|.+++.
T Consensus         5 QP~~~~~~~g~~vtL~C~~~~~~~~~~~~v~WyrQ~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~   84 (118)
T d1i8lc_           5 QPAVVLASSRGIASFVCEYASPGKATEVRVTVLRQADSQVTEVCAATYMMGNELTFLDDSICTGTSSGNQVNLTIQGLRA   84 (118)
T ss_dssp             CCSEEECCSSSCEEEEEEECCCSCCSEEEEEEEEESTTCCCEEEEEEEETTSCCCCCSSCSCCCCBCSSEEEEEECSCCG
T ss_pred             CCCEEEEeCCCcEEEEEEccccccccceeEEEEEECCCCeeEEEEEEeCCCCEecccCCcEEeEcCCCCEEEEEeecccc
Confidence            35577889999999999985432   2469999964321    111111000   0111111112223456899999999


Q ss_pred             CCCeEEEEEEe
Q psy15734         97 TDRGWYMCQIN  107 (314)
Q Consensus        97 ~d~G~Y~C~~~  107 (314)
                      +|+|.|.|.+.
T Consensus        85 ~Dsa~YyCa~~   95 (118)
T d1i8lc_          85 MDTGLYICKVE   95 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCCEEEEEeEe
Confidence            99999999874

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.42  E-value=1.3e-06  Score=57.81  Aligned_cols=83  Identities=17%  Similarity=0.332  Sum_probs=57.1

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eeee--ecCcCEEEEeCCc-eeEEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKVV--TQNKRVSITFNDH-RSWFLHL   91 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~~--~~~~~~~~~~~~~-~~~~L~i   91 (314)
                      +.+.....+++|+++.|.|.+++.  ....+.|+|... +.++-.   .    ...+  ...+|+.+..+.. +...|.|
T Consensus         5 l~~sg~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwlg~i~~~~~~~~ya~s~kgR~tiS~D~s~ntvyL~~   84 (122)
T d1vgeh1           5 LEQSGAEVKKPGASVKVSCKASGYSFTSYGLHWVRQAPGQRLEWMGWISAGTGNTKYSQKFRGRVTFTRDTSATTAYMGL   84 (122)
T ss_dssp             EEECCCEEECTTCCEEEEEEECSSCGGGSEEEEEEECTTSCEEEEEEEETTTCCEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             eEecCCcEECCCCCEEEEEEEcCCCccCCCceeeEeCCCCceeeeeeecCcccccccccceeEeeEEeccCCcceeeecc
Confidence            345566779999999999999875  346899999642 112111   0    0111  1246888876543 3457999


Q ss_pred             eeecCCCCeEEEEEEe
Q psy15734         92 RDVQETDRGWYMCQIN  107 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (314)
                      .+++.+|++.|+|...
T Consensus        85 ~~L~~eDtA~YYCAr~  100 (122)
T d1vgeh1          85 SSLRPEDTAVYYCARD  100 (122)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cccCCCcceEEEEeec
Confidence            9999999999999864

>d8faba1 b.1.1.1 (A:3-105) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.41  E-value=2.4e-07  Score=60.96  Aligned_cols=74  Identities=24%  Similarity=0.450  Sum_probs=49.4

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe---e-eecC---------CceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD---M-IITG---------DDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~---~-~~~~---------~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      ++|+ ...+.+|++++|.|.........+.|++....   . +...         .++....    ......|.|.+++.
T Consensus         3 tQp~-sl~~~~G~svtl~C~~~~~~~~~~~WYrQ~pg~~~~~~~~~~~~~~~~~~~~~~~~~----~~~~~~L~I~~l~~   77 (103)
T d8faba1           3 TQPP-SVSVSPGQTARITCSANALPNQYAYWYQQKPGRAPVMVIYKDTQRPSGIPQRFSSST----SGTTVTLTISGVQA   77 (103)
T ss_dssp             BCCS-EEEECTTSCEEEEEECTTGGGSCCEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEEE----ETTEEEEEETTCCG
T ss_pred             CCCC-eEEECCCCCEEEEEEeCCCCCCCEEEEEccCCCceEEEeeeecccccccCCcEEECC----CCCccCceEcCcch
Confidence            3444 67789999999999987766677899974311   1 1110         1111111    11246899999999


Q ss_pred             CCCeEEEEEEee
Q psy15734        246 HQFGSYRCVAVN  257 (314)
Q Consensus       246 ~d~G~Y~C~a~n  257 (314)
                      +|+|.|.|.+..
T Consensus        78 ~Dsa~YyCA~~~   89 (103)
T d8faba1          78 EDEADYYCQAWD   89 (103)
T ss_dssp             GGCEEEEEEEEE
T ss_pred             hHCceEEeeecC
Confidence            999999997764

>d1tjgl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Engineered (including hybrid species)

Probab=98.41  E-value=5e-07  Score=59.75  Aligned_cols=77  Identities=21%  Similarity=0.354  Sum_probs=52.5

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeec---------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIIT---------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .+++.|....+.+|++++|.|.........+.|++...    ..+.-         ..++...  .+  .....|.|.++
T Consensus         3 ~~tQ~P~sl~~~~G~svtL~C~~s~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~~~~--~~--~~~~~L~I~~l   78 (107)
T d1tjgl1           3 QLTQSPSSLSASVGDRITITCRASQGVTSALAWYRQKPGSPPQLLIYDASSLESGVPSRFSGS--GS--GTEFTLTISTL   78 (107)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EE--TTEEEEEESSC
T ss_pred             cEEeeCCEEEECCCCCEEEEEEECCCCCccEEEEeccCCccceEEEeecccccCCCCcceEEe--cc--CCEEEEEeccc
Confidence            35566778889999999999998866667888887332    11111         1111111  11  12458999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|+|.|.|.+.+
T Consensus        79 ~~~DsA~YyCa~~~   92 (107)
T d1tjgl1          79 RPEDFATYYCQQLH   92 (107)
T ss_dssp             CGGGCSEEEEEECS
T ss_pred             eeCcCceEEEEECc
Confidence            99999999997654

>d1ypzf1 b.1.1.1 (F:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.40  E-value=2.3e-06  Score=57.64  Aligned_cols=78  Identities=18%  Similarity=0.217  Sum_probs=50.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC--CceeEEecCC---Ce-eeec--C-----------CceeeeEeeCCeeeEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK---GD-MIIT--G-----------DDYEDSRLINGYSCHMTL  238 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~---~~-~~~~--~-----------~~~~~~~~~~~~~~~s~L  238 (314)
                      +.+++..+...+|++++|.|.+.+..  ...+.|++..   +. .++.  .           .++..+....  .....|
T Consensus         4 l~Q~~~sv~~~~G~svtL~C~~~~~~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~r~~~s~~~~--~~~~~L   81 (120)
T d1ypzf1           4 LEQPEISISRPRDETAQISCKVFIESFRSVTIHWYRQKPNQGLEFLLYVLATPTHIFLDKEYKKMEASKNPS--ASTSIL   81 (120)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECCGGGGGCCEEEEEECTTTCCEEEEEECSSCCCEEEESSSSEEEEEECCT--TTEEEE
T ss_pred             eEcCCCEEEecCCCcEEEEEEEecccccCCcccEEEeCCcccccccccccccccceeeeccccccccccccc--cccccc
Confidence            45667777888999999999987643  4568898732   11 1110  0           1111111111  123579


Q ss_pred             EEeecCCCCCeEEEEEEee
Q psy15734        239 KIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       239 ~i~~~~~~d~G~Y~C~a~n  257 (314)
                      .|.+++.+|+|.|.|.+..
T Consensus        82 ~I~~l~~~Dsa~YyCA~~~  100 (120)
T d1ypzf1          82 TIYSLEEEDEAIYYCSYGE  100 (120)
T ss_dssp             EECSCCGGGCSEEEEEECC
T ss_pred             cccccccccceeEEEEEcC
Confidence            9999999999999997654

>d1mqkl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.40  E-value=5.1e-07  Score=59.88  Aligned_cols=78  Identities=28%  Similarity=0.377  Sum_probs=52.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC-Ce---eeecCCc-------eeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK-GD---MIITGDD-------YEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~-~~---~~~~~~~-------~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      +++.|....+.+|++++|.|.........+.|++.. ++   .+.....       .+++...+  .....|.|.+++.+
T Consensus         4 ltQsP~~l~~~~G~svtL~C~~s~~~~~~i~WYrQ~pg~~p~~li~~~~~~~~~~~~~fs~~~~--~~~~~L~I~~~~~~   81 (109)
T d1mqkl_           4 LTQTPVSLSASVGETVTITCRASENIYSYLAWYQQKQGKSPQFLVYNAKTLGEGVPSRFSGSGS--GTQFSLKINSLLPE   81 (109)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEEE--TTEEEEEESSCCGG
T ss_pred             EECcCCEEEECCCCCEEEEEEeCCCcCcccceeeccccCCCeEEEEeeccccCCcCCCEEEecc--CCEEEEEEcccccc
Confidence            455677788899999999999877667779999832 11   1211110       11111111  12458999999999


Q ss_pred             CCeEEEEEEee
Q psy15734        247 QFGSYRCVAVN  257 (314)
Q Consensus       247 d~G~Y~C~a~n  257 (314)
                      |+|.|.|.+..
T Consensus        82 DSa~YyCA~~~   92 (109)
T d1mqkl_          82 DFGSYYCQHHY   92 (109)
T ss_dssp             GCEEEEEEECS
T ss_pred             CCeeEEEeeeC
Confidence            99999998753

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.40  E-value=1.5e-06  Score=57.71  Aligned_cols=81  Identities=15%  Similarity=0.300  Sum_probs=54.8

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e--e--ee--eecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H--H--KV--VTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~--~--~~--~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      ++....+++|++++|.|.+++.  ....+.|+|... ..++-.   .  .  ..  ..-.+|+.+..+. .+...|.|.+
T Consensus         6 qsg~~~vkpG~sl~LsC~~SG~s~~~~~~~W~RQ~PGk~lewl~~i~~~~~~~~y~~~~kgR~tis~d~s~n~v~L~i~~   85 (120)
T d1pg7x1           6 QSGPELVKPGASVKISCKASGYSFTGHLLNWVKQSHGKNLEWIGLVHPHNGAITYNQKFKDKATLTVDRSSTTAYIELVR   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCcEECCCCCEEEEEEEccccCCCCCcceeeecCCCceEEeeecCccccchhhhHHhhhcceeeeccCcceEEccccc
Confidence            4445568899999999999874  346799999642 222111   0  0  00  1123588877654 3456799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        86 l~~eDtA~YYCAr~   99 (120)
T d1pg7x1          86 LTSNDSAVYYCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeec
Confidence            99999999999863

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.39  E-value=1.7e-06  Score=56.49  Aligned_cols=81  Identities=16%  Similarity=0.329  Sum_probs=55.6

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ceeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENL--REYKVAWVKMI-TQTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .++....+++|+++.|.|++++.  ....+.|+|.. ++.++-...       ..+  .-.+|+.+..+.. +...|.+.
T Consensus         5 ~esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~~tvyL~~~   84 (116)
T d1mjuh1           5 QQPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSSSTAYMQLS   84 (116)
T ss_dssp             ECCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEEC
T ss_pred             eeECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEecccccceeEeccc
Confidence            45667789999999999999874  34688999863 222211100       001  1135888876543 44679999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          85 SLTSDDSAVYYCAN   98 (116)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCCceEEEEcc
Confidence            99999999999974

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.39  E-value=9.1e-07  Score=58.00  Aligned_cols=80  Identities=15%  Similarity=0.379  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.++|.  ....+.|+|... +.++-...       ..+  .-.+|+.+..+.. +...|.+.+
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~nt~yL~m~~   85 (117)
T d1jpth1           6 ESGGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSKNTAYLQMNS   85 (117)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEeccccceEEecccc
Confidence            3445678899999999999885  357899999642 21211100       011  1245888877543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|+|.-
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jpth1          86 LRAEDTAVYYCAR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEee
Confidence            9999999999975

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.38  E-value=2.3e-07  Score=62.55  Aligned_cols=75  Identities=15%  Similarity=0.176  Sum_probs=48.9

Q ss_pred             cCCCcceeecCccEEEEEEEeec-CCceeEEecCC----Ceee---e--c------------CCceeeeEeeCCeeeEEE
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEK----GDMI---I--T------------GDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~----~~~~---~--~------------~~~~~~~~~~~~~~~~s~  237 (314)
                      ..|....+.+|++++|.|.+.+. ....+.|++..    .+.+   .  .            ..++...  .+......+
T Consensus         3 Q~P~~~~v~~G~sv~l~C~~~~~~~~~~v~Wyrq~~~~~~~~l~~i~~~~~~~~~~~~~~~~~~r~~~~--~~~~~~~~~   80 (115)
T d2atpb1           3 QTPSSLLVQTNHTAKMSCEVKSISKLTSIYWLRERQDPKDKYFEFLASWSSSKGVLYGESVDKKRNIIL--ESSDSRRPF   80 (115)
T ss_dssp             EECSEEEECTTSCEEEEEECCSSCCSSEEEEEEEEECSSCEEEEEEEEEETTTEEEECGGGTTTCCEEE--ESTTSSSCE
T ss_pred             eeCCcEEEcCCCCEEEEEEEeCCCCCCceEEEEeecCCCCeEEEEeeEEecccCcEecCCcCCCCEEEE--EeCCCCeEE
Confidence            45666789999999999999864 45678898732    1111   0  0            0111111  111112348


Q ss_pred             EEEeecCCCCCeEEEEEEe
Q psy15734        238 LKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~  256 (314)
                      |.|.+++.+|+|.|.|.+.
T Consensus        81 L~I~~~~~~Dsg~Y~Ca~~   99 (115)
T d2atpb1          81 LSIMNVKPEDSDFYFCATV   99 (115)
T ss_dssp             EEECSCCGGGCEEEEEEEE
T ss_pred             EeecccCCCCCcEEEEeEc
Confidence            9999999999999999875

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=4.5e-07  Score=59.44  Aligned_cols=71  Identities=17%  Similarity=0.249  Sum_probs=47.9

Q ss_pred             cCccEEEEEEEeecCC--ceeEEecCCCeeeecCC-ceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        189 VSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGD-DYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~-~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .+..++|.|.+.|+-+  ..|.|.+++ ....... ........+ .|...+.|.|..-.......|+|+|.+...
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g-~~~~~~~~t~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDG-TPVTAGMETTQPSKQSNNKYMASSYLTLTARAWERHSSYSCQVTHEGH   93 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETT-EEECTTEEECCCEECTTSCEEEEEEEEEEHHHHTTCCEEEEEEEETTE
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECC-EECCCCeEecccEEcCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            3567899999999644  377899974 3332221 111122233 488889999988777777899999998653

>d1smoa_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.38  E-value=6.2e-07  Score=60.09  Aligned_cols=75  Identities=12%  Similarity=0.155  Sum_probs=47.3

Q ss_pred             CCcceeecCccEEEEEEEeec--CCceeEEecCCC----eeeecC------------CceeeeEeeCCeeeEEEEEEeec
Q psy15734        182 NQLEGAFVSQTVELHCHTEAF--PASLNYWTNEKG----DMIITG------------DDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~--p~p~~~W~~~~~----~~~~~~------------~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      .....+.+|++++|.|..++.  ....+.|++...    ..+...            .++.+.  .+......+|.|.++
T Consensus         6 e~~~~v~eG~svtl~C~~~~~~~~~~~~~Wyrq~~~~~~~~l~~~~~~~~~~~~~~~~R~~~~--~~~~~~~~~Lti~~l   83 (113)
T d1smoa_           6 EEKYELKEGQTLDVKCDYTLEKFASSQKAWQIIRDGEMPKTLACTERPSKNSHPVQVGRIILE--DYHDHGLLRVRMVNL   83 (113)
T ss_dssp             EEEEECCTTCCEEEEEECCHHHHTTSCEEEEEECTTSCCEEEEECCSSCCSSCCEEETTEEEE--EETTTTEEEEEECSC
T ss_pred             cCcEEEccCCCEEEEEEeCCCCCCCCEEEEEECCCCCCCEEEEecCCCCceEcceECCeEEEE--EECCCCEEEEEEccC
Confidence            344567899999999998643  445778987321    111110            112221  111122358999999


Q ss_pred             CCCCCeEEEEEEeeC
Q psy15734        244 LSHQFGSYRCVAVNA  258 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~  258 (314)
                      +.+|+|.|.|.+...
T Consensus        84 ~~~Dsg~Y~Cav~~~   98 (113)
T d1smoa_          84 QVEDSGLYQCVIYQP   98 (113)
T ss_dssp             CGGGCEEEEEEECCT
T ss_pred             CcccCceEEEEEECC
Confidence            999999999987544

>d2gj6d1 b.1.1.1 (D:15-114) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.38  E-value=1e-06  Score=56.74  Aligned_cols=67  Identities=15%  Similarity=0.312  Sum_probs=44.5

Q ss_pred             CccEEEEEEEeecCCceeEEecCC-Ce---eeec--------CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        190 SQTVELHCHTEAFPASLNYWTNEK-GD---MIIT--------GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p~~~W~~~~-~~---~~~~--------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      |++++|.|.........+.|++.. +.   .+..        ..++........  ...+|.|.+++.+|+|.|.|.+..
T Consensus         1 G~~vtl~C~~~~~~~~~~~Wyrq~~g~~p~~l~~~~~~~~~~~~rf~~~~~~~~--~~~sL~I~~~~~~Dsg~YyCa~~~   78 (94)
T d2gj6d1           1 GAIASLNCTYSDRGSQSFFWYRQYSGKSPELIMSIYSNGDKEDGRFTAQLNKAS--QYVSLLIRDSQPSDSATYLCAVTT   78 (94)
T ss_dssp             TSCEEEEEEECCTTCCEEEEEEECTTSCCEEEEEECSSEEEEETTEEEEEETTT--TEEEEEECSCCGGGCEEEEEEEES
T ss_pred             CccEEEEEEEccccCCcEEEEEECCCcccccceeeeeeccCCCCcEEEEecCCC--CEEeEEeeccccCcCccceeeEec
Confidence            789999999888778889998732 11   1111        112222111111  245899999999999999998865


Q ss_pred             C
Q psy15734        258 A  258 (314)
Q Consensus       258 ~  258 (314)
                      .
T Consensus        79 ~   79 (94)
T d2gj6d1          79 D   79 (94)
T ss_dssp             S
T ss_pred             C
Confidence            4

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.38  E-value=1.7e-08  Score=65.62  Aligned_cols=79  Identities=18%  Similarity=0.382  Sum_probs=50.5

Q ss_pred             ceEEEcCCcEEEEEEecCCCceEEEEEEcC-ce---eEEEe-eeeeeecCcCEEEEeC-CceeEEEEEeeecCCCCeEEE
Q psy15734         30 NVTATVGKEALMACVVENLREYKVAWVKMI-TQ---TILSI-HHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYM  103 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~---~~~~~-~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~  103 (314)
                      .++|.+|++++|.|.... ....+.|||.. +.   .+... ........+|+.+..+ ......|.|.+++++|+|.|.
T Consensus         2 slsV~eG~~vtL~C~~~~-~~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~~~~~L~I~~~~~~Dsa~Yy   80 (96)
T d1ymmd1           2 ALSIQEGENATMNCSYKT-SINNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSKKSSSLLITASRAADTASYF   80 (96)
T ss_dssp             CCCCSSCCCCCBCCBCSS-CEEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGGTBCCBCCSSCCSTTCSCCE
T ss_pred             CceECCCCCEEEEEEEeC-CcccEEEEEECCCCCccccccccceecccccccceeeccCcceecccCcCCCCcccCEEEe
Confidence            456889999999998865 45689999852 11   11111 1111122345544332 223457999999999999999


Q ss_pred             EEEecC
Q psy15734        104 CQINTV  109 (314)
Q Consensus       104 C~~~~~  109 (314)
                      |.+...
T Consensus        81 CA~~~~   86 (96)
T d1ymmd1          81 CATDTT   86 (96)
T ss_dssp             EEEEET
T ss_pred             EeEecC
Confidence            988543

>d2fx7l1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 3.2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 3.2 [TaxId: 9606]

Probab=98.38  E-value=5.9e-07  Score=59.61  Aligned_cols=77  Identities=19%  Similarity=0.350  Sum_probs=51.4

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec-CCceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEEEee
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF-PASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~-p~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ++++.|....+.+|++++|.|..... ....+.|++...    ..+...         .++...  ..  .....|.|.+
T Consensus         3 vltQ~P~~~~v~~G~tv~l~C~~~~~~~~~~~~WYrq~~g~~~~~l~~~~~~~~~~~~~~~s~~--~~--~~~~~L~I~~   78 (108)
T d2fx7l1           3 VLTQSPGTQSLSPGERATLSCRASQSVGNNKLAWYQQRPGQAPRLLIYGASSRPSGVADRFSGS--GS--GTDFTLTISR   78 (108)
T ss_dssp             CEECSSSEEEECTTCCEEEEEEESSCCGGGCEEEEEECTTSCCEEEEBTTTBCCTTSCTTEEEE--EE--TTEEEEEESS
T ss_pred             CEEeeCCeEEECCCCCEEEEEEeecCCCCccceeEeccccCCCEEEEeeecccccCCccceeee--cC--CCEEEEEehH
Confidence            35567788889999999999998654 345678987431    112111         111111  11  1245899999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      +..+|+|.|.|.+.+
T Consensus        79 ~~~~Dsa~YyCa~~~   93 (108)
T d2fx7l1          79 LEPEDFAVYYCQQYG   93 (108)
T ss_dssp             CCGGGCSEEEEEECS
T ss_pred             heecccEEEeeecCC
Confidence            999999999998753

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.37  E-value=1.8e-06  Score=56.75  Aligned_cols=81  Identities=19%  Similarity=0.327  Sum_probs=54.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eeee--ecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKVV--TQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~~--~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .++....+.+|+++.|.|+++|.  ....+.|+|... +.++-.   .    ...+  ...+|+.+..+.. +...|.|.
T Consensus         5 ~qsg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~~~~~L~i~   84 (117)
T d1mfah1           5 QQSGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTSTTTAYMELS   84 (117)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCccEeEeeec
Confidence            34556778999999999999874  446899998632 222111   1    0111  1134777776533 34579999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999974

>d1lk3l1 b.1.1.1 (L:1-106) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.37  E-value=1.5e-06  Score=57.34  Aligned_cols=21  Identities=24%  Similarity=0.396  Sum_probs=19.0

Q ss_pred             EEEEEeecCCCCCeEEEEEEe
Q psy15734        236 MTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ..|.|.+++.+|+|.|.|.+.
T Consensus        70 ~~L~I~~~~~~Dsa~YyCa~~   90 (106)
T d1lk3l1          70 FTLTIDPVEADDTAIYFCQQS   90 (106)
T ss_dssp             EEEEESSCCGGGCEEEEEEEC
T ss_pred             EEeEECCcChhhCCCcccccc
Confidence            589999999999999999654

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.36  E-value=9.1e-07  Score=58.13  Aligned_cols=81  Identities=20%  Similarity=0.349  Sum_probs=54.8

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe------eeeee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI------HHKVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~------~~~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      +.....+++|++++|.|++++.  ....+.|+|... ..++-.      .....  .-.+|+.+..+.. +...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~L   85 (116)
T d7fabh1           6 QSGPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSKNQFSLRLSSV   85 (116)
T ss_dssp             EECCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccchhhhhcccccc
Confidence            3445568889999999999874  456899999632 111110      11111  1235787776543 4568999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        86 ~~eDtAvYyCAr~   98 (116)
T d7fabh1          86 TAADTAVYYCARN   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccccceEEEeeee
Confidence            9999999999863

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.36  E-value=5.1e-06  Score=53.79  Aligned_cols=76  Identities=11%  Similarity=0.071  Sum_probs=49.5

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.+...|.. .|..|++|+|.|.... ....+.|+|++........        .   .........+.|..+...|
T Consensus         4 ~pkPsLsa~P~~-~V~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~--------~---~~~~~~~~~f~~~~~~~~~   70 (99)
T d1nkra2           4 YEKPSLSAQPGP-TVLAGENVTLSCSSRS-SYDMYHLSREGEAHERRLP--------A---GPKVNGTFQADFPLGPATH   70 (99)
T ss_dssp             SCCCEEEEESCS-EECTTCEEEEEEEESS-CCSEEEEEETTCSSCEEEE--------C---EEEETTEEEEEEEEEECCS
T ss_pred             CCCCEEEEeCCC-cccCCCeEEEEECCCC-CccEEEEEECCCccccEEE--------c---cccCCccEEEEEecccccc
Confidence            456777766755 5899999999999855 4568899996532211100        0   0000111256788888899


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      +|.|+|...
T Consensus        71 ~G~Y~C~y~   79 (99)
T d1nkra2          71 GGTYRCFGS   79 (99)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEee
Confidence            999999874

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.35  E-value=1.6e-06  Score=57.64  Aligned_cols=81  Identities=19%  Similarity=0.320  Sum_probs=54.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEee--e--ee--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIH--H--KV--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~--~--~~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... ..   +....  .  ..  ..-.+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kpG~sv~LsC~~SG~~~s~~~~~W~RQ~PGkgle~l~~i~~~~~~~~y~~~~kgR~tis~D~s~~t~~L~i~~   85 (121)
T d1j05b_           6 QSGAELVEPGASVKLSCTASGFNIKDTYMHWVKQRPEQGLEWIGRIDPANGNSKYVPKFQGKATITADTSSNTAYLQLTS   85 (121)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTCCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEecCCCCCCCcceeeECCCCccccccccCCcCCccccchhhccceEEEeecCCceeeecccc
Confidence            4455668899999999999874  346899998632 21   11111  0  00  11235787776543 345799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (121)
T d1j05b_          86 LTSEDTAVYYCAPF   99 (121)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcCcceEEEeEee
Confidence            99999999999853

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.35  E-value=1.7e-06  Score=56.79  Aligned_cols=81  Identities=15%  Similarity=0.288  Sum_probs=54.9

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .++....+++|+++.|.|++++..  ...+.|+|... +.++-...       ..+  .-.+|+.+..+.. +...|.|.
T Consensus         5 ~esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tiS~D~s~~t~~L~~~   84 (118)
T d2jelh1           5 AQSGPELVRPGVSVKISCKGSGYTFTTYAMHWVKQSHAKSLEWIGLISTYSGYTNYNQKFKGKATMTVDKSSSTAYMELA   84 (118)
T ss_dssp             EECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECSSSSEEEEEEECTTTCCEEECGGGBTTEEEEEEGGGTEEEEEEC
T ss_pred             EeECCceECCCCCEEEEEEEcCCCCCCCceecceeCCCcccccccccCCcCCcchhhhhhcccEEEecccCcceEeeccc
Confidence            345566788999999999998753  46899999642 22211100       011  1135887776543 34579999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|.-
T Consensus        85 sL~~eDTAvYYCAr   98 (118)
T d2jelh1          85 RLTSEDSAIYYCAR   98 (118)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCcceeeeEEE
Confidence            99999999999964

>d1o0va1 b.1.1.2 (A:228-330) Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 2, CH2-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.35  E-value=6.1e-07  Score=59.02  Aligned_cols=72  Identities=13%  Similarity=0.141  Sum_probs=49.1

Q ss_pred             ecCccEEEEEEEeec-CCc-eeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        188 FVSQTVELHCHTEAF-PAS-LNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ..+.+++|.|.+.|+ |.. .+.|++++.. .............+ .|...+.|.|..-.......|+|+|.+...
T Consensus        19 ~~~~tv~L~Cl~~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~~~y~~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (104)
T d1o0va1          19 HFPPTIQLLCLVSGYTPGTIQITWLEDGQV-MDVDLSTASTTQEGELASTQSELTLSQKHWLSDRTYTCQVTYQGH   93 (104)
T ss_dssp             CCCSEEEEEEEEEEECCCCEEEEEEETTEE-CCGGGEEEEEEEETTEEEEEEEEEEEHHHHHTTCCEEEEEEETTE
T ss_pred             CCCCeEEEEEEEEEEECCCcEEEEEECCEE-ccCCceeeeEeCCCCeEEEEEEEEECHHHcCCCCEEEEEEEECCE
Confidence            455679999999994 443 6789997444 33222222222333 388889999988776667789999998753

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.35  E-value=2.1e-06  Score=56.41  Aligned_cols=81  Identities=16%  Similarity=0.343  Sum_probs=55.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eee--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKV--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+.+|+++.|.|++++.  ....+.|+|... +.++-.   .    ...  ....+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~~t~~L~i~~   85 (117)
T d1iqdb1           6 QSGAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTSTNIAYMELSS   85 (117)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeecccccceEEEeecc
Confidence            3445568889999999999875  446789999632 211111   0    011  12356888887543 345799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCA~~   99 (117)
T d1iqdb1          86 LRSDDTAVYYCAVP   99 (117)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcCcceEEEEeEc
Confidence            99999999999874

>d1ogad1 b.1.1.1 (D:3-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.35  E-value=1e-06  Score=59.11  Aligned_cols=78  Identities=13%  Similarity=0.167  Sum_probs=51.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeee---------cCCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMII---------TGDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+.|....+.+|++++|.|..++. ...+.|++-..    ..+.         ...++.....  .......|.|.+++
T Consensus         3 l~Q~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~~~~~~~--~~~~~~~L~I~~~~   79 (115)
T d1ogad1           3 LEQSPQFLSIQEGENLTVYCNSSSV-FSSLQWYRQEPGEGPVLLVTVVTGGEVKKLKRLTFQFG--DARKDSSLHITAAQ   79 (115)
T ss_dssp             CEEECSEEEEETTCCEEEEEECSSC-CSCEEEEEECTTSCCEEEEEECSTTCEEEETTEEEEEC--TTSSEEEEEESSCC
T ss_pred             eEeCCCeEEECCCCCEEEEEEECCC-CceEEEEecCCCCceeeeeeeeecccceeecccccccc--cccceeeeeecCCC
Confidence            4556777889999999999998754 34688987321    1111         0112222222  22235689999999


Q ss_pred             CCCCeEEEEEEeeC
Q psy15734        245 SHQFGSYRCVAVNA  258 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~  258 (314)
                      .+|+|.|.|.+...
T Consensus        80 ~~Dsa~YyCa~~~~   93 (115)
T d1ogad1          80 PGDTGLYLCAGAGS   93 (115)
T ss_dssp             GGGCEEEEEEEECT
T ss_pred             ccceeeEcccccCC
Confidence            99999999987643

>d2aq2a1 b.1.1.1 (A:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.34  E-value=2e-06  Score=57.20  Aligned_cols=77  Identities=23%  Similarity=0.315  Sum_probs=50.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC---e-eeec---C---------CceeeeEeeCCeeeEEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG---D-MIIT---G---------DDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~---~-~~~~---~---------~~~~~~~~~~~~~~~s~L~i  240 (314)
                      .+.+.|....+.+|++++|.|...+ ....+.|++...   . .+..   .         .++......   .....|.|
T Consensus         3 ~V~Q~P~~~~~~~G~~vtl~C~~s~-~~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~---~~~~~L~I   78 (110)
T d2aq2a1           3 AVTQSPRNKVAVTGEKVTLSCQQTN-NHNNMYWYRQDTGHGLRLIHYSYGVGNTEKGDIPDGYEASRPS---QEQFSLIL   78 (110)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESS-CCSEEEEEEECTTSCEEEEEEESSTTCCEECSCCTTCEEEEEE---TTEEEEEE
T ss_pred             CEEEeCCeEEEcCCCCEEEEEEECC-CcCcEEEEEEcccCCceEEEEEeecCCcccCCCCCCEEEEecc---CCEEEEEE
Confidence            4566677788999999999998765 356789998321   1 1110   0         011111111   12468999


Q ss_pred             eecCCCCCeEEEEEEee
Q psy15734        241 RSILSHQFGSYRCVAVN  257 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n  257 (314)
                      .++..+|+|.|.|.+..
T Consensus        79 ~~~~~~Dsa~YyCa~~~   95 (110)
T d2aq2a1          79 ESATPSQTSVYFCASGG   95 (110)
T ss_dssp             SSCCGGGCEEEEEEEEE
T ss_pred             CCCCHhhCEEEEEeeCC
Confidence            99999999999998764

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.34  E-value=2.3e-06  Score=51.55  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=51.8

Q ss_pred             CCcceEEEcCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeC-CceeEEEEEeeecCCCCeEEEE
Q psy15734         27 PVANVTATVGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVTQNKRVSITFN-DHRSWFLHLRDVQETDRGWYMC  104 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~G~Y~C  104 (314)
                      ..+..++..|+.+.|.|.+.- ...|.++|.|-++..-....   ............ ....+.|.|..+.++|.|.|+|
T Consensus         9 R~S~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le---~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrC   85 (104)
T d1xaua_           9 RNSKHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLE---VGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSC   85 (104)
T ss_dssp             TTEEEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECC---CBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEE
T ss_pred             ecceeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEee---cCCccccchhhcCCeeEEEEEeeeeeecCCCceEE
Confidence            345678899999999999964 35679999997654322110   000111111111 2233589999999999999999


Q ss_pred             EEec
Q psy15734        105 QINT  108 (314)
Q Consensus       105 ~~~~  108 (314)
                      .++-
T Consensus        86 Sanf   89 (104)
T d1xaua_          86 STNF   89 (104)
T ss_dssp             EEEE
T ss_pred             ecCC
Confidence            9953

>d1ac6a_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.34  E-value=1.1e-06  Score=58.53  Aligned_cols=78  Identities=14%  Similarity=0.234  Sum_probs=52.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC---Cee-eec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK---GDM-IIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~---~~~-~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +.+.+....+.+|++++|.|.....-...+.|++..   +.. +..         ..++......++  ....|.|.++.
T Consensus         3 VtQ~p~~~~~~~G~~vtl~C~~~~~~~~~~~WYrQ~pg~~p~~l~~~~~~~~~~~~~~f~~~~~~~~--~~~~L~i~~~~   80 (110)
T d1ac6a_           3 VTQTEGQVALSEEDFLTIHCNYSASGYPALFWYVQYPGEGPQFLFRASRDKEKGSSRGFEATYNKEA--TSFHLQKASVQ   80 (110)
T ss_dssp             EEECCSEEEEETTEEEEECEEEECSSCCEEEEEEECTTSCCEEEEEECSTTCEEEETTEEEECBTTT--TBCCEEEEEEC
T ss_pred             eEeCCCeEEECCCCCEEEEEEecCCCCcceEEEEcCCCCceEEeeeeeeecccCCCCceeeeecCCC--CEEeeeecCcC
Confidence            456677788999999999999877666678998732   111 110         111211111111  23589999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        81 ~~Dsa~YyCA~~~   93 (110)
T d1ac6a_          81 ESDSAVYYCALSG   93 (110)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cCCCcccceeecC
Confidence            9999999998764

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.33  E-value=1.5e-06  Score=56.02  Aligned_cols=75  Identities=12%  Similarity=0.080  Sum_probs=51.3

Q ss_pred             CCCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCC
Q psy15734         19 PDMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETD   98 (314)
Q Consensus        19 ~~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d   98 (314)
                      ..+|.+...+.. .|..|++|+|.|.........+.|+|++.....           ..  .... ....+.|.+++.+|
T Consensus         3 ~PkP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~-----------~~--~~~~-~~a~F~l~~v~~~~   67 (96)
T d1ucta2           3 YGKPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLP-----------QH--QSGE-HPANFSLGPVDLNV   67 (96)
T ss_dssp             SCCCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCC-----------SE--EECS-SSEEEECCSCCGGG
T ss_pred             CCCCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccce-----------EE--cCCC-cccEEEEecccccc
Confidence            356777777755 599999999999875445557899996532111           00  0111 11268899999999


Q ss_pred             CeEEEEEEec
Q psy15734         99 RGWYMCQINT  108 (314)
Q Consensus        99 ~G~Y~C~~~~  108 (314)
                      +|.|+|....
T Consensus        68 ~G~Y~C~y~~   77 (96)
T d1ucta2          68 SGIYRCYGWY   77 (96)
T ss_dssp             CEEEEEEEEC
T ss_pred             CcEEEEEEEc
Confidence            9999999853

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.33  E-value=2.7e-06  Score=56.15  Aligned_cols=79  Identities=15%  Similarity=0.375  Sum_probs=54.4

Q ss_pred             cceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEee---eeee--ecCcCEEEEeCCc-eeEEEEEeeecC
Q psy15734         29 ANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIH---HKVV--TQNKRVSITFNDH-RSWFLHLRDVQE   96 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~---~~~~--~~~~~~~~~~~~~-~~~~L~i~~~~~   96 (314)
                      ..-.+.+|+++.|.|.+++.  ....+.|+|... +   .+....   ....  .-.+|+.+..+.. +...|.|.+++.
T Consensus         7 g~~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~~~~~L~i~~L~~   86 (119)
T d1kxvc_           7 GGGTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAKNTAYLQMDSLKP   86 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSSTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCCcceecccccCCc
Confidence            34568889999999999874  457899999642 1   121111   0111  1235888887643 345799999999


Q ss_pred             CCCeEEEEEEe
Q psy15734         97 TDRGWYMCQIN  107 (314)
Q Consensus        97 ~d~G~Y~C~~~  107 (314)
                      +|++.|.|...
T Consensus        87 eDtA~YYCAr~   97 (119)
T d1kxvc_          87 DDTAMYYCKPS   97 (119)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CCcceEeeeec
Confidence            99999999864

>d1bwwa_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.32  E-value=2.3e-06  Score=56.76  Aligned_cols=31  Identities=23%  Similarity=0.486  Sum_probs=23.3

Q ss_pred             cceeEEecCceEEEEEEecccCCCceEEEcC
Q psy15734        132 STDVVVREGTEVTLECSAVGYPEPYVAWRRE  162 (314)
Q Consensus       132 ~~~~~~~~g~~~~l~C~~~~~p~p~~~W~~~  162 (314)
                      |..+.+.+|+.++|.|...+.....+.||+.
T Consensus        10 P~~l~~~~G~svtL~C~~s~~~~~~~~WYrq   40 (109)
T d1bwwa_          10 PSSLSASVGDRVTITCQASQDIIKYLNWYQQ   40 (109)
T ss_dssp             CSEEEECTTCCEEEEEEESSCCTTCEEEEEE
T ss_pred             CCEEEECCCCCEEEEEEecCCCCCcceEeee
Confidence            3556678899999999876655567889973

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=98.32  E-value=1.9e-06  Score=56.50  Aligned_cols=80  Identities=11%  Similarity=0.316  Sum_probs=54.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------ee--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KV--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+.+|+++.|.|.+++.  ....+.|+|... +.++-...       ..  ..-.+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~~tvyL~~~~   85 (118)
T d1nlbh1           6 QSGPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSASTAYLQINS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCceeEEeeeee
Confidence            3445668999999999999875  346799998642 21211100       00  11245888877543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAr   98 (118)
T d1nlbh1          86 LKNEDTATYFCAR   98 (118)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccCcceEEEEee
Confidence            9999999999964

>d1h5ba_ b.1.1.1 (A:) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=98.32  E-value=2.1e-06  Score=57.34  Aligned_cols=83  Identities=18%  Similarity=0.248  Sum_probs=52.2

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCC--Ce-e-eec--CCcee----eeEeeCCeeeEEEEEEeecCCCC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GD-M-IIT--GDDYE----DSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~-~-~~~--~~~~~----~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      +.+.|....+.+|++++|.|..++. ...+.|++..  +. . +..  .....    ...........+.|.|.+++.+|
T Consensus         4 V~Q~P~~~~v~~G~~vtl~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~~D   82 (113)
T d1h5ba_           4 VEQSPSALSLHEGTDSALRCNFTTT-MRSVQWFRQNSRGSLISLFYLASGTKENGRLKSAFDSERARYSTLHIRDAQLED   82 (113)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSC-CSEEEEEEECTTSCEEEEEEESSSEEEETTEEEECCSSSSSEEEEEECSCCGGG
T ss_pred             eEECCCEEEEcCCCCEEEEEEEecC-CccceEEEeecccceEEEEEeeeeeccccccceEEeecCCceeEEEECCCCHhH
Confidence            4556777889999999999998753 4568898732  11 1 111  10000    00111111234689999999999


Q ss_pred             CeEEEEEEeeCCCC
Q psy15734        248 FGSYRCVAVNALGE  261 (314)
Q Consensus       248 ~G~Y~C~a~n~~g~  261 (314)
                      +|.|.|.+....+.
T Consensus        83 sa~YyCa~~~~~~~   96 (113)
T d1h5ba_          83 SGTYFCAAEASSGS   96 (113)
T ss_dssp             CEEEEEEEECSSSS
T ss_pred             CEEEEEEecCCCCC
Confidence            99999988765443

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.32  E-value=2.1e-06  Score=55.53  Aligned_cols=81  Identities=15%  Similarity=0.341  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEE---Eeee------eee--ecCcCEEEEeCCc-eeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTIL---SIHH------KVV--TQNKRVSITFNDH-RSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~---~~~~------~~~--~~~~~~~~~~~~~-~~~~L~i   91 (314)
                      +.....+.+|+++.|.|.+++..  ...+.|+|... +.++   ....      ..+  .-.+|+.+..+.. +...|.|
T Consensus         6 eSG~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~~t~~L~i   85 (109)
T d2ck0h1           6 ESGGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQSMLYLQM   85 (109)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEE
T ss_pred             eECCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceeccccccceeEecc
Confidence            34456789999999999998753  46899998642 2221   1110      001  1135888877543 3457999


Q ss_pred             eeecCCCCeEEEEEEe
Q psy15734         92 RDVQETDRGWYMCQIN  107 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (314)
                      .+++.+|++.|.|.-.
T Consensus        86 ~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cCCCHhHCEEEEEEEc
Confidence            9999999999999853

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.32  E-value=2.2e-06  Score=56.22  Aligned_cols=80  Identities=18%  Similarity=0.301  Sum_probs=54.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee------e-ee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH------K-VV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~------~-~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+.+|+++.|.|.+++.  ....+.|+|... +.++-...      . .+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esG~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~~t~yLq~~~   85 (117)
T d1jnhb1           6 QSGAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSSSIVYLQLNS   85 (117)
T ss_dssp             ECCCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCccceeeecccc
Confidence            3445567889999999999874  457899999631 11211100      0 11  1135888876543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1jnhb1          86 LTSEDSAVYSCSR   98 (117)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999975

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.32  E-value=1.7e-06  Score=57.00  Aligned_cols=80  Identities=15%  Similarity=0.310  Sum_probs=54.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e--e--eee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H--H--KVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~--~--~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.++-.   .  .  ..+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~s   85 (119)
T d1eapb1           6 ESGTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSSSTAYMQLNS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCcceEEeeeec
Confidence            4455668899999999999875  346799998632 112111   0  0  001  1235888876543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999975

>d1ucta2 b.1.1.4 (A:101-196) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.9e-07  Score=56.87  Aligned_cols=74  Identities=15%  Similarity=0.207  Sum_probs=49.1

Q ss_pred             CCeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        175 PPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       175 ~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      +|.+...+.. .|..|++|+|.|.........+.|+|++......   ..    ....  ...+.|.++..+|+|+|+|.
T Consensus         5 kP~Lsa~P~~-~V~~G~~VTL~C~~~~~~~~~f~L~k~g~~~~~~---~~----~~~~--~a~F~l~~v~~~~~G~Y~C~   74 (96)
T d1ucta2           5 KPFLSADRGL-VLMPGENISLTCSSAHIPFDRFSLAKEGELSLPQ---HQ----SGEH--PANFSLGPVDLNVSGIYRCY   74 (96)
T ss_dssp             CCEEEESSCS-EECTTCCCEEEEECSSSCCSEEEEEETTCSSCCS---EE----ECSS--SEEEECCSCCGGGCEEEEEE
T ss_pred             CCEEEEeCCC-ccCCCCeEEEEEeCCCCCceEEEEEECCcccceE---Ec----CCCc--ccEEEEeccccccCcEEEEE
Confidence            3555555543 6899999999998643444578899875321111   00    1111  13899999999999999998


Q ss_pred             EeeC
Q psy15734        255 AVNA  258 (314)
Q Consensus       255 a~n~  258 (314)
                      ....
T Consensus        75 y~~~   78 (96)
T d1ucta2          75 GWYN   78 (96)
T ss_dssp             EECT
T ss_pred             EEcC
Confidence            7643

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=98.31  E-value=1.6e-06  Score=57.25  Aligned_cols=79  Identities=18%  Similarity=0.310  Sum_probs=53.7

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e---eeee--ecCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H---HKVV--TQNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~---~~~~--~~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ...-.+++|+++.|.|.+++.  ....+.|+|... +.++-.   .   ....  ...+|+.+..+.. +...|.|.+++
T Consensus         7 sG~~~vkPG~sl~LsC~~SG~~~~~y~~~W~RQ~PGkglewv~~i~~~~~~~y~~~~kgRftiS~D~s~nt~~L~i~~l~   86 (120)
T d1dn0b1           7 WGAGLLKPSETLSLTCAVYGGSFSDYYWSWIRQPPGKGLEWIGEINHSGSTNYNPSLKSRVTISVDTSKNQFSLKLSSVT   86 (120)
T ss_dssp             ECCCEECTTSCEEEEEEEESSCCSSCCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             ECCcEECCCCCEEEEEEEccccCccCcceeeeECCCccceeeeeccccccchhccceeeeeEEeccCchheecccccccc
Confidence            344568889999999999875  346899999632 111111   0   0111  1235888887543 35679999999


Q ss_pred             CCCCeEEEEEE
Q psy15734         96 ETDRGWYMCQI  106 (314)
Q Consensus        96 ~~d~G~Y~C~~  106 (314)
                      .+|++.|.|..
T Consensus        87 ~eDtA~YYCAr   97 (120)
T d1dn0b1          87 AADTAVYYCAR   97 (120)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccccEEEEEe
Confidence            99999999964

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.31  E-value=1.2e-06  Score=58.22  Aligned_cols=79  Identities=18%  Similarity=0.388  Sum_probs=52.6

Q ss_pred             cceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEeee----eee--ecCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         29 ANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIHH----KVV--TQNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~~----~~~--~~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ....+.+|+++.|.|.+++.  ....+.|+|... ..   +.....    ...  ...+|+.+..+.. +...|.|.+++
T Consensus         8 g~~~~kpG~Sv~LsC~~SG~s~~~y~~~WyRQ~PGkgle~l~~i~~~~~~~~y~~~~~gR~tis~d~s~~~~~L~i~~L~   87 (119)
T d1qnzh_           8 GAELVKPGASVKMSCKASGYTFTTYPIEWMKQNHGKSLEWIGNFHPYSDDTNYNEKFKGKAKLTVEKSSSTVYLEFSRLT   87 (119)
T ss_dssp             CCCEECTTEEEEEEEEEETCCSSSSCEEEEEEETTSCCEEEEEEETTTTEECCCTTTTTTEEEEEETTTTEEEEEEEEEC
T ss_pred             CCceECCCCCEEEEEEEeccCCCCCCcceeeecCCCcceEeeccCCcccccchhhhhcccceeecccccceeeeeecccC
Confidence            34468889999999999874  345799998631 21   211110    011  1235788776443 34579999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      .+|++.|.|...
T Consensus        88 ~eDsAvYYCA~~   99 (119)
T d1qnzh_          88 SDDSAVYYCAIH   99 (119)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             ccceeEEEEEEe
Confidence            999999999753

>d1ncna_ b.1.1.1 (A:) CD86 (b7-2), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD86 (b7-2), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.31  E-value=9.9e-07  Score=58.78  Aligned_cols=73  Identities=19%  Similarity=0.374  Sum_probs=43.8

Q ss_pred             ceeecCccEEEEEEEeecCC---cee--EEecCCCeeeec---C--------Cceee--eEeeCCeeeEEEEEEeecCCC
Q psy15734        185 EGAFVSQTVELHCHTEAFPA---SLN--YWTNEKGDMIIT---G--------DDYED--SRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~---p~~--~W~~~~~~~~~~---~--------~~~~~--~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      +.+..|++++|.|.....+.   ..+  .|.+++......   +        +++..  ....+    ..+|.|.+++.+
T Consensus         4 V~a~~G~tv~L~C~~~~~~~~~~~~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~r~~~~~~----~~sL~I~~v~~~   79 (110)
T d1ncna_           4 IQAYFNETADLPCQFANSQNQSLSELVVFWQDQENLVLNEVYLGKEKFDSVHSKYMGRTSFDSD----SWTLRLHNLQIK   79 (110)
T ss_dssp             EEEETTSCEEEECCCCCTTCCCGGGEEEEEEETTCCEEEEEETTEECCSSBCTTTTTSEEEETT----TTEEEECSCCGG
T ss_pred             EEEEeCCcEEEEEEEeCCCCCCcceeEEEeeccccceEEEEeCCceecccCCcceEEEEeccCC----eEEEEECCCChh
Confidence            45778999999999864332   223  344443322211   0        11111  11111    238999999999


Q ss_pred             CCeEEEEEEeeCCCC
Q psy15734        247 QFGSYRCVAVNALGE  261 (314)
Q Consensus       247 d~G~Y~C~a~n~~g~  261 (314)
                      |+|.|.|.+......
T Consensus        80 D~G~Y~C~V~~~~~~   94 (110)
T d1ncna_          80 DKGLYQCIIHHKKPT   94 (110)
T ss_dssp             GCEEEEEEEEEECSS
T ss_pred             HCEEEEEEEEecCCC
Confidence            999999999755433

>d1xaua_ b.1.1.4 (A:) B and T lymphocyte attenuator, Btla {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: B and T lymphocyte attenuator, Btla
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.31  E-value=3.2e-06  Score=50.94  Aligned_cols=87  Identities=16%  Similarity=0.224  Sum_probs=61.7

Q ss_pred             cceeecCccEEEEEEEee-cCCceeEEecCCCee---eecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        184 LEGAFVSQTVELHCHTEA-FPASLNYWTNEKGDM---IITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g-~p~p~~~W~~~~~~~---~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ...+..|+.+.|.|.+.- .-.|.++|-|.++..   +...+....+-.+.+.-....|.+..+..+|.|.|+|.|.-..
T Consensus        12 ~hs~~~G~~f~leCPVkYC~~RPnVtWCKlngt~cv~Le~~pq~~TsW~e~~nis~FvLhF~pvl~sDnGsYrCSanf~s   91 (104)
T d1xaua_          12 KHSAWTGELFKIECPVKYCVHRPNVTWCKHNGTIWVPLEVGPQLYTSWEENRSVPVFVLHFKPIHLSDNGSYSCSTNFNS   91 (104)
T ss_dssp             EEEECTTSCEEEEEEEECSSSCCCEEEEEECSSSEEECCCBTTEEEEEECSSSSCEEEEEETTCCGGGCEEEEEEEEETT
T ss_pred             eeeEecCCceEecCcchhhcCCCCcEEEEeCCcEEEEeecCCccccchhhcCCeeEEEEEeeeeeecCCCceEEecCCCh
Confidence            346889999999999975 457899998876643   2223344444444444445688999999999999999997666


Q ss_pred             CCc-eeEEEEEE
Q psy15734        260 GET-DGFIKVYV  270 (314)
Q Consensus       260 g~~-~~~~~l~V  270 (314)
                      +-. +.++++.|
T Consensus        92 ~vieSHSvti~V  103 (104)
T d1xaua_          92 QVINSHSVTIHV  103 (104)
T ss_dssp             EEEECCCEEEEE
T ss_pred             hheecceEEEEe
Confidence            543 45666655

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.31  E-value=2e-06  Score=56.64  Aligned_cols=80  Identities=18%  Similarity=0.335  Sum_probs=53.6

Q ss_pred             CcceEEEcCCcEEEEEEecCCC---ceEEEEEEcC-ceeEEEeee------ee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENLR---EYKVAWVKMI-TQTILSIHH------KV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~-~~~~~~~~~------~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|.++|..   ...+.|+|.. ++.++-...      ..  ..-.+|+.+..+.. +...|.|.++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~nt~~L~~~sL   86 (119)
T d1ncwh1           7 SGPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSKNQFFLQLNSV   86 (119)
T ss_dssp             ESCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEecccccceeecccccc
Confidence            3445688899999999998753   3578999863 222211110      00  11235888887543 3467999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (119)
T d1ncwh1          87 TTEDTATYYCAGL   99 (119)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCCceEEEEeEe
Confidence            9999999999753

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.30  E-value=2.4e-06  Score=56.19  Aligned_cols=81  Identities=16%  Similarity=0.345  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCce-eEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDHR-SWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~~-~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++..  ...+.|+|... +.++-...       ..+  .-.+|+.+..+... ...|.|.+
T Consensus         6 eSG~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   85 (118)
T d2fbjh1           6 ESGGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISRDNAKNSLYLQMSK   85 (118)
T ss_dssp             EECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEECSSSCEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEeecCccceeeccccc
Confidence            33456688999999999998853  45799998632 21211100       001  12458888876443 45799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d2fbjh1          86 VRSEDTALYYCARL   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEeeEe
Confidence            99999999999863

>d2g5ra1 b.1.1.1 (A:24-144) N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialic acid binding Ig-like lectin 7 (SIGLEC-7, p75/AIRM1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.30  E-value=3.6e-07  Score=62.18  Aligned_cols=77  Identities=16%  Similarity=0.121  Sum_probs=46.4

Q ss_pred             CCcceeecCccEEEEEEEeecC-------CceeEEecCCCeeee------cCC------ce--eeeEeeCCeeeEEEEEE
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP-------ASLNYWTNEKGDMII------TGD------DY--EDSRLINGYSCHMTLKI  240 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p-------~p~~~W~~~~~~~~~------~~~------~~--~~~~~~~~~~~~s~L~i  240 (314)
                      +..+.+.+|++|.|.|..+...       ...+.|++.......      ...      .+  +.....+......+|.|
T Consensus         8 ~~svtv~~G~~V~ipC~~~~~~~~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~R~~~~~~~~~~~~sL~I   87 (121)
T d2g5ra1           8 QSSVTVQEGMCVHVRCSFSYPVDSQTDSDPVHGYWFRAGNDISWKAPVATNNPAWAVQEETRDRFHLLGDPQTKNCTLSI   87 (121)
T ss_dssp             CSEEEECTTCCEEECCEEECC--CTTTTSCCEEEEEECC-----CCCSEESCTTSCCCTTTTTTEEECSCGGGTBCCEEE
T ss_pred             CCEEEEccCCcEEEEEEEeCCCCCCcccccEEEEeeEecCCCceEEEEeeCCCCceeccccceEEEEeeeCcCCEEEEEE
Confidence            4567899999999999885211       134678875322110      000      00  11112221122458999


Q ss_pred             eecCCCCCeEEEEEEeeC
Q psy15734        241 RSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n~  258 (314)
                      .+++.+|+|.|.|.+...
T Consensus        88 ~~v~~~DsG~Y~C~v~~~  105 (121)
T d2g5ra1          88 RDARMSDAGRYFFRMEKG  105 (121)
T ss_dssp             CSCCGGGCEEEEEEEEET
T ss_pred             CCCChHHCEEEEEEEEeC
Confidence            999999999999999754

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=98.30  E-value=5e-06  Score=53.62  Aligned_cols=72  Identities=14%  Similarity=0.123  Sum_probs=46.0

Q ss_pred             eecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        187 AFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ...++.++|.|.+.|+-+  ..+.|++++................++ |...+.|.|.   .++...|+|.+.+....
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~L~v~---~~~~~~ytC~V~H~sl~   88 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNGKLVMHSSAHKTAQPNGDWTYQTLSHLALT---PSYGDTYTCVVEHIGAP   88 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETTEECCCCCSBCCCEECSSSCEEEEEEEEEC---CCTTCCEEEEEECTTSS
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEeccCCeEeCceEECCCCCEEEEEEeEcC---CCCCCEEEEEEEeCCCC
Confidence            456788999999999744  467899974433222222222233333 7777778775   34555899999987543

>d1mjul1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.30  E-value=2.1e-06  Score=57.16  Aligned_cols=78  Identities=17%  Similarity=0.273  Sum_probs=50.1

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec-----CCceeEEecCCC----eeeecC-------CceeeeEeeCCeeeEEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF-----PASLNYWTNEKG----DMIITG-------DDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~-----p~p~~~W~~~~~----~~~~~~-------~~~~~~~~~~~~~~~s~L~i  240 (314)
                      ++++.+....+.+|++++|.|..++.     ....+.|++...    ..++..       ...+......  .....|.|
T Consensus         3 vlTQ~p~slsv~~G~svtL~C~~s~~~~~~~~~~~i~WYrq~~g~~~~~liy~~~~~~~~~~~r~~~~~s--~~~~~L~I   80 (112)
T d1mjul1           3 VMTQAAPSVPVTPGESVSISCRSSKSLLHSNGNTYLYWFLQRPGQSPQLLIYRMSNLASGVPDRFSGSGS--GTAFTLRI   80 (112)
T ss_dssp             CEECCCSEEEECTTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEEEC--SSEEEEEE
T ss_pred             ceEecCCEEEECCCCCEEEEEEECCCCccCCCCceeEEEECCCCCcEEEEEEeCCcccCCCCCcEEeecC--CCEEEEEE
Confidence            35567777889999999999998663     245678986431    111111       1111111111  12458999


Q ss_pred             eecCCCCCeEEEEEEe
Q psy15734        241 RSILSHQFGSYRCVAV  256 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~  256 (314)
                      .+++.+|+|.|.|...
T Consensus        81 s~~~~~DsAvYyCa~~   96 (112)
T d1mjul1          81 SRVEAEDVGVYYCLQH   96 (112)
T ss_dssp             SSCCGGGCEEEEEEEC
T ss_pred             CCccccCCceEEEEeC
Confidence            9999999999999543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.29  E-value=2.9e-06  Score=56.75  Aligned_cols=80  Identities=15%  Similarity=0.383  Sum_probs=54.6

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e--e--eee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H--H--KVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~--~--~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|++++.  ....+.|+|... +.++-.   .  .  ..+  .-.+|+.+..+.. +...|.|.++
T Consensus         7 SG~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s~~t~yL~i~~L   86 (135)
T d1ieha_           7 SGGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNAKNTLYLQMNSL   86 (135)
T ss_dssp             ECCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTTTCCEEEEEESC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCCCceeEecEeee
Confidence            344568899999999999874  456799998632 111111   0  0  011  1246888887654 3467999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|+|.-.
T Consensus        87 ~~eDTAvYYCAr~   99 (135)
T d1ieha_          87 KSEDTAVYYCAKY   99 (135)
T ss_dssp             CSSSCEEEEEEEB
T ss_pred             CcccceeeEEEEe
Confidence            9999999999763

>d1hxmb1 b.1.1.1 (B:1-123) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.29  E-value=3.2e-06  Score=57.17  Aligned_cols=80  Identities=23%  Similarity=0.410  Sum_probs=52.6

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecC--CceeEEecCCC---ee-eec--------------CCceeeeEeeCCeeeEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG---DM-IIT--------------GDDYEDSRLINGYSCHM  236 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~---~~-~~~--------------~~~~~~~~~~~~~~~~s  236 (314)
                      .+.+++....+.+|++++|.|.++|..  ...+.|++...   .. +..              ..++.+......  ...
T Consensus         3 ~l~Qp~~s~t~~~g~t~~LsC~~sg~~~s~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~rf~~~~~~~~--~~~   80 (123)
T d1hxmb1           3 HLEQPQISSTKTLSKTARLECVVSGITISATSVYWYRERPGEVIQFLVSISYDGTVRKESGIPSGKFEVDRIPET--STS   80 (123)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESSCTTTSCEEEEEECTTSCCEEEEEECSSSCEEECTTCCTTSEEEEEETTT--TEE
T ss_pred             CeECCCCeEEeCCCCCEEEEEEEcCCCcccCeEEEEEECCCCCceEeeecccccccccccccccceeEEeeeccc--cce
Confidence            455666777888999999999998753  45678987321   11 110              112333222221  235


Q ss_pred             EEEEeecCCCCCeEEEEEEeeC
Q psy15734        237 TLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       237 ~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      .|.|.++..+|+|.|.|.+...
T Consensus        81 ~L~i~~l~~~Dsa~YyCA~~~~  102 (123)
T d1hxmb1          81 TLTIHNVEKQDIATYYCALWEA  102 (123)
T ss_dssp             EEEECSCCGGGCEEEEEEEEEE
T ss_pred             eecccccccccCcEEEEeeeCC
Confidence            7999999999999999987653

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.29  E-value=2.2e-06  Score=56.84  Aligned_cols=80  Identities=16%  Similarity=0.357  Sum_probs=54.2

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEE---Eee--e--ee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTIL---SIH--H--KV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~---~~~--~--~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|.+++.  ....+.|+|... +.++   ...  .  ..  ..-.+|+.+..+.. +...|.|.++
T Consensus         7 sG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yL~m~sL   86 (122)
T d1bz7b1           7 SGGGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPKNTLFLQMTSL   86 (122)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCccEeEeeeeee
Confidence            344567889999999999875  346799999632 1111   110  0  01  11246888876543 3467999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (122)
T d1bz7b1          87 RSEDTAIYYCTRG   99 (122)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             cccCceEEEeecC
Confidence            9999999999764

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=98.29  E-value=1.7e-06  Score=56.72  Aligned_cols=80  Identities=18%  Similarity=0.355  Sum_probs=53.8

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEee------eeeee--cCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIH------HKVVT--QNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~------~~~~~--~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      .....+++|+++.|.|.++|.  ....+.|+|... ..++-..      ...+.  -.+|+.+..+.. +...|.|.+++
T Consensus         7 sG~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s~n~~~L~~~~l~   86 (116)
T d1a2yb_           7 SGPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNSKSQVFLKMNSLH   86 (116)
T ss_dssp             ECCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGGGTEEEEEECSCC
T ss_pred             ECCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCCCceEEcceeeee
Confidence            344568889999999999874  457899999632 1111110      00111  134777776543 34679999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      .+|++.|+|.-.
T Consensus        87 ~eDTAvYYCAr~   98 (116)
T d1a2yb_          87 TDDTARYYCARE   98 (116)
T ss_dssp             GGGCEEEEEEEE
T ss_pred             eccceEEEEEEe
Confidence            999999999853

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.29  E-value=3.1e-06  Score=55.87  Aligned_cols=80  Identities=11%  Similarity=0.297  Sum_probs=54.7

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCce-eEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDHR-SWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~~-~~~L~i~~   93 (314)
                      +.....+.+|+++.|.|.+++.  ....+.|+|... ..++-...       ..+  .-.+|+.+..+... ...|.|.+
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~yLq~~~   85 (121)
T d2p49b1           6 ESGGGLVQAGGSLRLSCAASGYAYTYIYMGWFRQAPGKEREGVAAMDSGGGGTLYADSVKGRFTISRDKGKNTVYLQMDS   85 (121)
T ss_dssp             EEECEEEETTCCEEEEEEEESCSSCCSEEEEEEECTTSCCEEEEEEETTSCSCEECGGGTTTEEEECTTSTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEcCCCcccCceeeccCCCCCceeeeeecCCcccccccccceeEeEEEeecCCceEEEEEeee
Confidence            3345668899999999999874  457899999642 11111100       001  12358888876443 45799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCAr   98 (121)
T d2p49b1          86 LKPEDTATYYCAA   98 (121)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccccceeEEeeec
Confidence            9999999999986

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.29  E-value=3.8e-06  Score=56.19  Aligned_cols=83  Identities=16%  Similarity=0.304  Sum_probs=56.7

Q ss_pred             ecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEee-------eeee--ecCcCEEEEeCCc-eeEEEEE
Q psy15734         25 AEPVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIH-------HKVV--TQNKRVSITFNDH-RSWFLHL   91 (314)
Q Consensus        25 ~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~-------~~~~--~~~~~~~~~~~~~-~~~~L~i   91 (314)
                      +.+.....+++|+++.|.|.+++.  ....+.|+|... +.++-..       ...+  .-.+|+.+..+.. +...|.|
T Consensus         3 L~esg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~~tv~L~~   82 (130)
T d1rhhb1           3 LEQSGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQATSTAYMEL   82 (130)
T ss_dssp             EEECCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEE
T ss_pred             EeccCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCccEEEEEe
Confidence            345556678999999999999874  456899999642 2221110       0011  1235888887544 3457999


Q ss_pred             eeecCCCCeEEEEEEe
Q psy15734         92 RDVQETDRGWYMCQIN  107 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~~  107 (314)
                      .+++.+|++.|.|.-.
T Consensus        83 ~~L~~eDtAvYyCAr~   98 (130)
T d1rhhb1          83 TNLRSDDTAVYYCARD   98 (130)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             eccCCCCcEEEEEEee
Confidence            9999999999999853

>d2rhea_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.29  E-value=6.6e-06  Score=54.71  Aligned_cols=22  Identities=32%  Similarity=0.462  Sum_probs=19.9

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|.+..
T Consensus        72 ~~L~I~~v~~~DsA~YyCA~~~   93 (114)
T d2rhea_          72 ASLAISGLESEDEADYYCAAWN   93 (114)
T ss_dssp             EEEEESSCCGGGCEEEEEEEEE
T ss_pred             eeeEecccCcccCceEEEeecC
Confidence            4899999999999999998764

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.29  E-value=1.6e-06  Score=56.87  Aligned_cols=80  Identities=19%  Similarity=0.357  Sum_probs=54.1

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEE---Eee---eeee--ecCcCEEEEeCCce-eEEEEEeee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTIL---SIH---HKVV--TQNKRVSITFNDHR-SWFLHLRDV   94 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~---~~~---~~~~--~~~~~~~~~~~~~~-~~~L~i~~~   94 (314)
                      +.....+++|++++|.|.++|.  ....+.|+|... +.++   ...   ....  .-.+|+.+..+... ...|.|.++
T Consensus         6 eSG~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewi~~i~~~~~~~y~~s~kgRftiS~D~s~n~~~L~~~sL   85 (117)
T d1c5db1           6 ESGPGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQPPGKGLEWIAAISSGGSPYYNSALKSRLSINRDTSKSQVFLKMNSL   85 (117)
T ss_dssp             EECCSEECTTSCEEEEEEECSSCTTTCCEEEEEECTTSCCEEEEEECTTCCEEECTTTSSSEEEEEETTTTEEEEEECSC
T ss_pred             eECCceECCCCCeEEEEEEcCCCccCCceEcccCCCCcceeeeeccccccccccccccccceEEecccccceeecccccc
Confidence            3345568899999999999875  346799998632 1111   110   0001  12358888876443 467999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|..
T Consensus        86 ~~eDtAvYYCAr   97 (117)
T d1c5db1          86 QTEDTAIYFCTR   97 (117)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEec
Confidence            999999999975

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.28  E-value=3.3e-06  Score=56.29  Aligned_cols=83  Identities=11%  Similarity=0.087  Sum_probs=53.4

Q ss_pred             ceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcC-ceeEEEeee------ee--eecCcCEEEEeCCceeEEEEEee
Q psy15734         23 RFAEPVANVTATVGKEALMACVVENLREYKVAWVKMI-TQTILSIHH------KV--VTQNKRVSITFNDHRSWFLHLRD   93 (314)
Q Consensus        23 ~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~-~~~~~~~~~------~~--~~~~~~~~~~~~~~~~~~L~i~~   93 (314)
                      .+...|..+.+.+|++++|.|..+......+.|||.. ++.+.....      ..  .....++.....  ....|.|..
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~--~~~~l~l~~   80 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRV--TDTELRLQV   80 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEE--ETTEEEEEE
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccc--cccEEEEec
Confidence            3445577888999999999999876555689999974 222211110      00  011224433322  123689999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++++|++.|.|...
T Consensus        81 ~~~~dsa~Y~Ca~~   94 (112)
T d1fo0b_          81 ANMSQGRTLYCTCS   94 (112)
T ss_dssp             ESCCSCEEEEEEEE
T ss_pred             CCccCCccEEEEEe
Confidence            99999999999974

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.28  E-value=4.8e-06  Score=55.33  Aligned_cols=80  Identities=15%  Similarity=0.301  Sum_probs=55.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eeee--ecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKVV--TQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~~--~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.++-.   .    ...+  .-.+|+.+..+. .+...|.|.+
T Consensus         5 esG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~nt~yL~m~~   84 (126)
T d1lmka1           5 QSGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSSNIAYMQLSS   84 (126)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCccEEEeeecc
Confidence            4556678899999999999874  457899998632 212110   0    0111  124688887654 3456899999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|+|.-
T Consensus        85 L~~eDTAvYYCAr   97 (126)
T d1lmka1          85 LTSEDSAVYYCAR   97 (126)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEee
Confidence            9999999999974

>d1oaql_ b.1.1.1 (L:) Immunoglobulin light chain lambda variable domain, VL-lambda {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.28  E-value=1.7e-06  Score=57.24  Aligned_cols=77  Identities=19%  Similarity=0.262  Sum_probs=49.7

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecC-C--ceeEEecCC---Cee-eec---------CCceeeeEeeCCeeeEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFP-A--SLNYWTNEK---GDM-IIT---------GDDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p-~--p~~~W~~~~---~~~-~~~---------~~~~~~~~~~~~~~~~s~L~  239 (314)
                      +++++++ ...+.+|++++|.|..++.. .  -.+.|++..   ... +..         ..++.....  +  ....|.
T Consensus         2 ~~~tQ~~-slsvs~G~tvtl~C~~s~~~~~~~~~v~WyrQ~pg~~p~~l~y~~~~~~~~~~~rf~~s~~--~--~~~~L~   76 (110)
T d1oaql_           2 AVVTQES-ALTTSPGETVTLTCRSSTGAVTTSNYANWVQEKPDHLFTGLIGGTNNRAPGVPARFSGSLI--G--NKAALT   76 (110)
T ss_dssp             CCEEECS-EEEECTTCEEEEEEEETTBCCCGGGCCEEEEEETTTEEEEEEETTTEECTTSCTTEEEEEE--T--TEEEEE
T ss_pred             CCEeeCC-CEEeCCCCCEEEEEEEcCCCCcceeeeEEEEeecccceeeeeeeeceeccccceeeeeccc--c--cceeee
Confidence            3455555 56799999999999997533 2  347898732   111 111         112222221  1  246899


Q ss_pred             EeecCCCCCeEEEEEEee
Q psy15734        240 IRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n  257 (314)
                      |.+++.+|+|.|.|.+..
T Consensus        77 I~~~~~~Dsa~YyCa~~~   94 (110)
T d1oaql_          77 ITGAQTEDEAIYFCALWY   94 (110)
T ss_dssp             EESCCGGGCEEEEEEEEE
T ss_pred             cCCCCccccEeEEEEccc
Confidence            999999999999998764

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.28  E-value=3.7e-06  Score=55.42  Aligned_cols=81  Identities=16%  Similarity=0.357  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEe------eee-ee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSI------HHK-VV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~------~~~-~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++..  ...+.|+|... +.++-.      ... .+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~ya~s~kgRftiSrD~s~nt~yLqm~s   85 (119)
T d1rz7h1           6 QSGAEVKKPGATVKISCKASGYTFSDFYMYWVRQAPGKGLEWMGLIDPEDADTMYAEKFRGRVTITADTSTDTGYLELSS   85 (119)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceEccccCCccceeeeeecCCcccccccccceeeeEEEecccCceEEEeeeec
Confidence            44456688899999999998853  46799998632 112111      000 01  1135888877543 446799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|+|...
T Consensus        86 L~~eDTAvYYCAr~   99 (119)
T d1rz7h1          86 LRSEDTAVYYCAAD   99 (119)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             cCcccceEEEEeec
Confidence            99999999999763

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.28  E-value=1.3e-06  Score=58.09  Aligned_cols=79  Identities=14%  Similarity=0.301  Sum_probs=51.5

Q ss_pred             CcceEEEcCCcEEEEEEecCC----CceEEEEEEcCc-eeEEE---eee---eeee--cCcCEEEEeCCc-eeEEEEEee
Q psy15734         28 VANVTATVGKEALMACVVENL----REYKVAWVKMIT-QTILS---IHH---KVVT--QNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~~-~~~~~---~~~---~~~~--~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      .....+.+|++++|.|.+++.    ....+.|+|... ..++.   ...   ....  -.+|+.+..+.. +...|.|.+
T Consensus         7 sg~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~~~~~L~i~s   86 (123)
T d1r0ah1           7 SGPGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSNNQAFLNMMT   86 (123)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGGTEEEEEECS
T ss_pred             ECCceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccceeEEcceee
Confidence            334568889999999998763    235789998621 11111   100   0011  125777776543 346799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|..
T Consensus        87 l~~eDsAvYyCAr   99 (123)
T d1r0ah1          87 VETADTAIYYCAQ   99 (123)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cccccceEEeecc
Confidence            9999999999985

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=8.8e-06  Score=53.83  Aligned_cols=79  Identities=13%  Similarity=0.113  Sum_probs=45.1

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecC-CCc--eEEEEEEcCceeEEEeee-eeeecCcCEEEEeCCceeEEEEEeeecC
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVEN-LRE--YKVAWVKMITQTILSIHH-KVVTQNKRVSITFNDHRSWFLHLRDVQE   96 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~-~~~--~~v~W~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~L~i~~~~~   96 (314)
                      .|.+..+.   .+.+|+.++|.|.+.+ .|.  +.+.|++ ++..+..... ......+.....      ..|.+.-...
T Consensus         4 ~P~I~~~~---~l~~G~~~~l~C~v~~~~P~~~~~i~W~~-g~~~~~~~~~~~~~~~~~~~~~~------s~l~~~~~~~   73 (109)
T d1vcaa1           4 DPEIHLSG---PLEAGKPITVKCSVADVYPFDRLEIDLLK-GDHLMKSQEFLEDADRKSLETKS------LEVTFTPVIE   73 (109)
T ss_dssp             CCEEEESS---CEETTSCEEEEEEEEEEBSGGGEEEEEEE-TTEEEEEEECCSCCSSCCCEEEE------EEEEECCCGG
T ss_pred             CCEEecCC---CccCCCeEEEEeEeCCcCCCCceEEEEec-cCceeeccccccccccCCcceee------EEEEccCChH
Confidence            35554332   3779999999999965 453  4799998 4444432211 111112222222      2566664444


Q ss_pred             CCCeEEEEEEecC
Q psy15734         97 TDRGWYMCQINTV  109 (314)
Q Consensus        97 ~d~G~Y~C~~~~~  109 (314)
                      .|...|+|.+.+.
T Consensus        74 D~g~~ltC~a~~~   86 (109)
T d1vcaa1          74 DIGKVLVCRAKLH   86 (109)
T ss_dssp             GTTCEEEEEEEEC
T ss_pred             HCCcEEEEEEEcC
Confidence            4445899999754

>d2esvd1 b.1.1.1 (D:4-116) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.28  E-value=3.1e-06  Score=56.17  Aligned_cols=24  Identities=21%  Similarity=0.343  Sum_probs=20.9

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        68 ~~~L~I~~~~~~Dsa~YyCa~~~~   91 (110)
T d2esvd1          68 SSTLILPHATLRDTAVYYCIVVRS   91 (110)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEES
T ss_pred             eeeehhcccccCCceEEEEEEeCC
Confidence            358999999999999999988654

>d1dn0b2 b.1.1.2 (B:121-225) Immunoglobulin heavy chain mu constant domain 1, CH1-mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain mu constant domain 1, CH1-mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.28  E-value=2.8e-06  Score=55.81  Aligned_cols=82  Identities=11%  Similarity=0.125  Sum_probs=51.1

Q ss_pred             eeecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCC--CCeEEEEEEeeCCCC
Q psy15734        186 GAFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSH--QFGSYRCVAVNALGE  261 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~--d~G~Y~C~a~n~~g~  261 (314)
                      .......+.|.|.+.|+-+  ..|.|.+++...............++.|...+.|.|..-...  ....|+|+|.+..+.
T Consensus        17 ~~~~~~~~~l~Cl~~gF~P~~i~v~W~~~~~~~~~~~~~~~~~~~~gtys~~S~L~v~~~eW~~~~~~~ytC~V~H~~~~   96 (105)
T d1dn0b2          17 SPSDTSSVAVGCLAQDFLPDSITFSWKYKNNSDISSTRGFPSVLRGGKYAATSQVLLPSKDVMAGTDEHVVCKVQHPNGN   96 (105)
T ss_dssp             ----CCSEEEEEEEEEEBSSCCEEEEEETTSCEECCEEECCCEEETTEEEEEEEEEECTTCC---CCCEEEEEEECTTCC
T ss_pred             ccCCCCceEEEEEEecccCCcEEEEEEECCccccCCEEcceEEccCCCEEEEEEEEEcHHHhccCCCCEEEEEEEECCCC
Confidence            3445678999999999543  477899876544322211222233444888888988876653  235899999998766


Q ss_pred             ceeEEE
Q psy15734        262 TDGFIK  267 (314)
Q Consensus       262 ~~~~~~  267 (314)
                      ....+.
T Consensus        97 ~~~~v~  102 (105)
T d1dn0b2          97 KEKNVP  102 (105)
T ss_dssp             EEEEEE
T ss_pred             EEeEEe
Confidence            555543

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.28  E-value=4.2e-06  Score=55.04  Aligned_cols=80  Identities=15%  Similarity=0.386  Sum_probs=54.7

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEee-------eeee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIH-------HKVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~-------~~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +...-.+++|+++.|.|.+++.  ....+.|+|... +.++-..       ...+  .-.+|+.+..+.. +...|.+.+
T Consensus         6 esg~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~nt~~L~m~~   85 (120)
T d1ad9b1           6 QSGAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTSTNTAYMELSS   85 (120)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcceEEeccccc
Confidence            3445568899999999999874  346899998632 2221110       0111  1246888876543 456899999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|+|..
T Consensus        86 L~~eDTAvYYCAr   98 (120)
T d1ad9b1          86 LRSEDTAFYFCAR   98 (120)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEEEE
Confidence            9999999999975

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=98.28  E-value=3.7e-06  Score=55.29  Aligned_cols=81  Identities=15%  Similarity=0.322  Sum_probs=54.8

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEee-------eeeee--cCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIH-------HKVVT--QNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~-------~~~~~--~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|++++.  ....+.|+|... +.++-..       ...+.  -.+|+.+..+.. +...|.|.+
T Consensus         6 esG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~~t~yL~i~~   85 (118)
T d1ct8b1           6 ESGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSSSTAYMQFSS   85 (118)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCccceEEecccc
Confidence            4455678889999999999874  457899998632 2221110       01111  134777776533 346799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|+|.-.
T Consensus        86 L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          86 LTTEDSAIYYCARY   99 (118)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeee
Confidence            99999999999753

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=3.8e-07  Score=59.83  Aligned_cols=71  Identities=17%  Similarity=0.276  Sum_probs=46.9

Q ss_pred             cCccEEEEEEEeecCCc--eeEEecCCCeeeecCCc-eeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDD-YEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .++.+.|.|.+.|+.+.  .+.|++++.. +..... .......+ .|...+.|.|..........|+|++.+...
T Consensus        19 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~~   93 (102)
T d1rzfl2          19 QANKATLVCLISDFYPGAVTVAWKADSSP-VKAGVETTTPSKQSNNKYAASSYLSLTPEQWKSHRSYSCQVTHEGS   93 (102)
T ss_dssp             HTTCEEEEEEEEEEBSSCCEEEEEETTEE-CCSSEEECCCEECTTSCEEEEEEEEECHHHHHHSSCEEEEEEETTE
T ss_pred             cCCcEEEEEEEEeeCCCCeEEEEEECCEE-CCCCEEeCCcEECCCCEEEEEEEEEECHHHhCCCCEEEEEEEECCc
Confidence            46679999999995443  6789997433 322211 11122333 388888999987766656689999998643

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.27  E-value=1.2e-06  Score=57.59  Aligned_cols=77  Identities=13%  Similarity=0.159  Sum_probs=50.5

Q ss_pred             ecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCcee--eeE-eeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        188 FVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYE--DSR-LINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~--~~~-~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..++.++|.|.+.|+.+  ..+.|++++.. ........  ... .++.|...+.|.|..-.......|+|++.+.....
T Consensus        17 ~~~~~vtL~Clv~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l~~   95 (105)
T d1fp5a2          17 GSRDKRTLACLIQNFMPEDISVQWLHNEVQ-LPDARHSTTQPRKTKGSGFFVFSRLEVTRAEWEQKDEFICRAVHEAASP   95 (105)
T ss_dssp             SSSCCEEEEEEEEEEBSSCCEEEEEETTEE-CCGGGEEECCCEECSSSCEEEEEEEEECHHHHTTGGGEEEEEECTTSTT
T ss_pred             hcCCcEEEEEEEEeeeCCCcEEEEEECCEE-CCCceeEeeeeEecCCCCEEEEEEEEECHHHcCCCCEEEEEEEECCCCC
Confidence            35678999999998543  47789997443 22221111  112 22348888899998777777678999999865544


Q ss_pred             eeE
Q psy15734        263 DGF  265 (314)
Q Consensus       263 ~~~  265 (314)
                      ...
T Consensus        96 ~~~   98 (105)
T d1fp5a2          96 SQT   98 (105)
T ss_dssp             TTE
T ss_pred             CeE
Confidence            433

>d1j05a_ b.1.1.1 (A:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.26  E-value=1.7e-06  Score=57.51  Aligned_cols=78  Identities=18%  Similarity=0.241  Sum_probs=49.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeec----CCceeEEecCCC----eeeecCC-------ceeeeEeeCCeeeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAF----PASLNYWTNEKG----DMIITGD-------DYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~----p~p~~~W~~~~~----~~~~~~~-------~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +++.|....+.+|++++|.|.....    ....+.|++...    ..++-..       ..+.....++  ....|.|.+
T Consensus         4 ltQsP~~l~v~~G~svtl~C~~s~s~~~~~~~~~~WYrq~~g~~p~~liy~~~~~~~~~~~~~~~~~~~--~~~~L~I~~   81 (111)
T d1j05a_           4 LTQSPASLAVSLGQRATMSCRAGESVDIFGVGFLHWYQQKPGQPPKLLIYRASNLESGIPVRFSGTGSR--TDFTLIIDP   81 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCCBSSSCBCEEEEEECTTSCCEEEEETTTEECTTSCTTEEEECSS--SEEEEEESS
T ss_pred             EEccCCEEEECCCCCEEEEEEeccCCccCCceeEEEEEccCCCCCEEEEEeeccccCCCCCcEEEecCC--CEEEEEEcc
Confidence            4556777788999999999987532    233488987421    1121110       1111111222  346999999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|+|.|.|.+.+
T Consensus        82 ~~~~Dsa~YyCa~~~   96 (111)
T d1j05a_          82 VEADDVATYYCQQTN   96 (111)
T ss_dssp             CCGGGCEEEEEEECS
T ss_pred             cccccCccEEEeecC
Confidence            999999999998754

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.26  E-value=3.5e-06  Score=54.97  Aligned_cols=79  Identities=14%  Similarity=0.371  Sum_probs=53.7

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---ee----eee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---HH----KVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~~----~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+.+|+++.|.|.+++.  ....+.|+|... +.++-.   ..    ..+  ...+|+.+..+.. +...|.|.++
T Consensus         7 SG~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~nt~~L~~~~L   86 (114)
T d1indh1           7 SGGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQNNLYLQLNSL   86 (114)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCccceeeeeeeee
Confidence            345568899999999999875  346789999642 212111   00    011  1135888877543 3457999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCA~   98 (114)
T d1indh1          87 RSEDTALYFCAS   98 (114)
T ss_dssp             CGGGCEEEEEEC
T ss_pred             ccCcccEEEECC
Confidence            999999999975

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.25  E-value=4.3e-06  Score=55.78  Aligned_cols=81  Identities=20%  Similarity=0.331  Sum_probs=55.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eeee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.++-.   .    ...+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~t~yL~~~s   85 (128)
T d2nxyd1           6 ESGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTSTVYLELRN   85 (128)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCceEEeeeee
Confidence            3445568899999999999885  346899998632 111111   0    0111  1246888887543 346799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTA~YYCAr~   99 (128)
T d2nxyd1          86 LRSDDTAVYFCAGV   99 (128)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccCceEEEEeEE
Confidence            99999999999864

>d2gsia1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 2 [TaxId: 10090]

Probab=98.25  E-value=2e-06  Score=57.12  Aligned_cols=77  Identities=18%  Similarity=0.286  Sum_probs=49.9

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec----CCceeEEecCCC--e--eeecC---------CceeeeEeeCCeeeEEEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF----PASLNYWTNEKG--D--MIITG---------DDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~----p~p~~~W~~~~~--~--~~~~~---------~~~~~~~~~~~~~~~s~L~  239 (314)
                      ++++.|....+.+|++++|.|..+..    ....+.|++...  .  .++..         .++....  .  .....|.
T Consensus         3 ~ltQsP~s~s~~~G~svtL~C~~s~~~~~~~~~~i~WYrQ~pg~~~~~li~~~~~~~~g~~~rfs~~~--~--~~~~~L~   78 (111)
T d2gsia1           3 VLTQSPASLAVSLGQPATISCGASKSVRTSGYSYMDWNQQKPGQPPRRLIYLVSNLESGVPARFSGSG--S--GTDFTLN   78 (111)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCCCSSSCCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--E--TTEEEEE
T ss_pred             ceEeeCCEEEECCCCCEEEEEEECCCCccCCccceEEEEECCCCccEEEEEccCccCCCcCCcEEEec--C--CCchhcc
Confidence            34566777889999999999987642    223478987421  1  11111         1222211  1  1245899


Q ss_pred             EeecCCCCCeEEEEEEee
Q psy15734        240 IRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n  257 (314)
                      |.+++.+|+|.|.|.+..
T Consensus        79 I~~~~~~DsA~YyCa~~~   96 (111)
T d2gsia1          79 IHPVEEEDAATYYCSHIR   96 (111)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             cccccccCCceEEEEECC
Confidence            999999999999997654

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.25  E-value=4.7e-06  Score=55.66  Aligned_cols=81  Identities=20%  Similarity=0.308  Sum_probs=54.9

Q ss_pred             CCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee-------ee--eecCcCEEEEeCC-ceeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH-------KV--VTQNKRVSITFND-HRSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~-------~~--~~~~~~~~~~~~~-~~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|++++..  ...+.|+|... +.++-...       ..  ..-.+|+.+..+. .+...|.|.+
T Consensus         6 esg~~l~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~pGkglewlg~i~~~~~~~~ya~s~~~R~tis~D~s~n~vyL~l~s   85 (125)
T d1rihh1           6 QSGNELAKPGASMKMSCRASGYSFTSYWIHWLKQRPDQGLEWIGYIDPATAYTESNQKFKDKAILTADRSSNTAFMYLNS   85 (125)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEEETTTTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEccCCCCCCCCccccCCCCccceeeeecCCccccccccccceeeeEEecccCcceEeeeeec
Confidence            44556788999999999998753  46799998632 22211100       01  1123578777654 3446799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|.-.
T Consensus        86 L~~eDtAvYYCAR~   99 (125)
T d1rihh1          86 LTSEDSAVYYCARE   99 (125)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCcccceEEEEeee
Confidence            99999999999853

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.25  E-value=4.2e-06  Score=55.53  Aligned_cols=81  Identities=14%  Similarity=0.331  Sum_probs=54.9

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEe
Q psy15734         26 EPVANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .++....+.+|+++.|.|.++|..  ...+.|+|... +.++-...       ..+  .-.+|+.+..+.. +...|.|.
T Consensus         5 ~esg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~~t~yL~~~   84 (124)
T d2b1hh1           5 EQSGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRSTNTAHLQWS   84 (124)
T ss_dssp             EECCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTTTEEEEEES
T ss_pred             eeECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCCcEEEEeee
Confidence            344556789999999999998854  35789998632 22211110       001  1136888776544 34579999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|.-
T Consensus        85 ~L~~eDTA~YYCAR   98 (124)
T d2b1hh1          85 SLKPSDTALYYCAR   98 (124)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccccceEEEEee
Confidence            99999999999964

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.24  E-value=3.1e-06  Score=55.76  Aligned_cols=80  Identities=16%  Similarity=0.340  Sum_probs=53.9

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ceeEEEeeee--------e-e--ecCcCEEEEeCCc-eeEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMI-TQTILSIHHK--------V-V--TQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~~~~~~~~~--------~-~--~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .....+.+|+++.|.|.+++.  ....+.|+|.. ++.++-....        . +  .-.+|+.+..+.. +...|.|.
T Consensus         7 sG~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~n~~~L~~~   86 (120)
T d1dlfh_           7 SGGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSKRRVYLQMN   86 (120)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTTTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeecccccceecccee
Confidence            334557889999999999874  45789999863 2222211000        0 1  1135888876543 34679999


Q ss_pred             eecCCCCeEEEEEEe
Q psy15734         93 DVQETDRGWYMCQIN  107 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~~  107 (314)
                      +++.+|++.|.|...
T Consensus        87 ~L~~eDtAvYYCA~~  101 (120)
T d1dlfh_          87 TLRAEDTGIYYCTGI  101 (120)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             eccCCCceEEEeeEe
Confidence            999999999999763

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.24  E-value=4.4e-06  Score=55.61  Aligned_cols=79  Identities=16%  Similarity=0.324  Sum_probs=54.0

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------ee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|.+++.  ....+.|+|... +-++-...       ..  ..-.+|+.+..+.. +...|.|.++
T Consensus         7 sg~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~~t~yL~~~sL   86 (127)
T d2fx7h1           7 SGAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRSTSTAYLELNSL   86 (127)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCccceEeeeeccc
Confidence            344557889999999999874  456799998632 22211100       01  11246888887643 3467999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|.-
T Consensus        87 ~~eDTavYYCAR   98 (127)
T d2fx7h1          87 RPEDTAVYYCAR   98 (127)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcccceEEEEee
Confidence            999999999985

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=98.24  E-value=2.9e-06  Score=57.24  Aligned_cols=79  Identities=19%  Similarity=0.237  Sum_probs=52.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC--CceeEEecCC---C-eeeecC---------CceeeeEeeCCeeeEEEEEEee
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEK---G-DMIITG---------DDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~---~-~~~~~~---------~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      +...+....+.+|++++|.|...+..  ...+.|++..   + ..+...         .++........  ....|.|.+
T Consensus         4 vv~~~~sv~v~~G~~vtL~C~~s~~~~~~~~~~WyrQ~pg~~~~~l~~~~~~~~~~~~~r~~~s~~~~~--~~~~L~i~~   81 (120)
T d1hxma1           4 LVPEHQTVPVSIGVPATLRCSMKGEAIGNYYINWYRKTQGNTMTFIYREKDIYGPGFKDNFQGDIDIAK--NLAVLKILA   81 (120)
T ss_dssp             EEESCSEEEEETTCCEEEEEEECSSCGGGSEEEEEEEESSSCSEEEEETTTEECTTTTTTEEEEEEGGG--TEEEEEESS
T ss_pred             EeccCCCEEECCCCCEEEEEEEeccCccCCcCeEEEccccccceeeeccccceeecccccceeeccccc--cceeccccc
Confidence            44566677899999999999998654  4568898731   1 112111         22332222221  246999999


Q ss_pred             cCCCCCeEEEEEEeeC
Q psy15734        243 ILSHQFGSYRCVAVNA  258 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~  258 (314)
                      ++.+|+|.|.|.....
T Consensus        82 ~~~~Dsa~YyCA~~~~   97 (120)
T d1hxma1          82 PSERDEGSYYCACDTL   97 (120)
T ss_dssp             CCGGGCEEEEEEEECC
T ss_pred             ccccCCceeecCcccC
Confidence            9999999999976553

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.24  E-value=5.8e-06  Score=53.56  Aligned_cols=70  Identities=13%  Similarity=0.038  Sum_probs=45.7

Q ss_pred             eecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +..|+.++|.|.+.|+.+.  .+.|.+++ ..+............++ |...+.|.+.   .+|.+.|+|++....-
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng-~~v~~~~~~~~~~~~dgty~~~s~l~v~---~~~~~~ytC~V~H~sl   88 (100)
T d1k5nb_          16 AENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFYLLYYTEFT---PTEKDEYACRVNHVTL   88 (100)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETT-EECTTCEECCCEECTTSCEEEEEEEEEC---CCSSCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEECccCCCCcEEEEEECC-EecCCccccceecCCCCcEEEEEEeEEC---CCCCCEEEEEEEeCCC
Confidence            4578899999999997544  66899974 43322222222333444 6666677664   4566789999988643

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.24  E-value=3.6e-06  Score=56.17  Aligned_cols=80  Identities=11%  Similarity=0.386  Sum_probs=52.8

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eeee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|++++.  ....+.|+|... +.++-.   .    ....  ...+|+.+..+.. +...|.|.++
T Consensus         6 sG~~lvkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~~l   85 (126)
T d1rjca1           6 SGGGSVQAGQSLRLSCATSGATSSSNCMGWFRQAPGKEREGVAVIDTGRGNTAYADSVQGRLTISLDNAKNTLYLQMNSL   85 (126)
T ss_dssp             BCCEEECTTCCEEEEEECC-CTTTCSEEEEEEECTTSCCEEEEEEETTTCCEEECTTTTTTEEEEEEC--CEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCceEeeeeCCCcceEeeeccccccccccccccceeeEEEEecCCceEEEEEEecc
Confidence            344568889999999999874  456899999642 111110   0    0111  1135788876543 3457999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        86 ~~eDTAvYYCAr~   98 (126)
T d1rjca1          86 KPEDTAMYYCAAD   98 (126)
T ss_dssp             CGGGCEEEEEEEC
T ss_pred             CcccCceeEEEee
Confidence            9999999999863

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.23  E-value=1.2e-06  Score=56.66  Aligned_cols=74  Identities=14%  Similarity=0.328  Sum_probs=49.3

Q ss_pred             EEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEee---eee--eecCcCEEEEeCCc-eeEEEEEeeecCCCCe
Q psy15734         33 ATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIH---HKV--VTQNKRVSITFNDH-RSWFLHLRDVQETDRG  100 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~---~~~--~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G  100 (314)
                      |++|+++.|.|.+++.  ....+.|+|... +   .+....   ...  ....+|+.+..+.. +...|.|.+++.+|++
T Consensus         5 vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewi~~i~~~g~t~y~~~~kgR~tiSrd~s~n~~~L~i~~l~~eDtA   84 (107)
T d1sjva_           5 VQAGESLKLSCAASGNTFSGGFMGWYRQAPGKQRELVATINSRGITNYADFVKGRFTISRDNAKKTVYLEMNSLEPEDTA   84 (107)
T ss_dssp             CCTTCCEEEEECCCC-----CCEEEEEECTTSCCEEEEEECTTCCEEECTTTTTCEEEEECTTTCCEEEEECSCCGGGCS
T ss_pred             ecCCCCcEEEEEECCCCccCCcEEEEEeCCccceeeeeeeeeccccccccccccceEEecCCceeEEEEeecCCCcccce
Confidence            5679999999999874  446789999632 1   111110   011  11235888887644 3467999999999999


Q ss_pred             EEEEEE
Q psy15734        101 WYMCQI  106 (314)
Q Consensus       101 ~Y~C~~  106 (314)
                      .|.|..
T Consensus        85 vYyCA~   90 (107)
T d1sjva_          85 VYYCYT   90 (107)
T ss_dssp             EEEEEE
T ss_pred             eeeEec
Confidence            999975

>d1f3rb2 b.1.1.1 (B:139-257) Immunoglobulin light chain kappa variable domain, VL-kappa {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=9.1e-07  Score=59.54  Aligned_cols=77  Identities=23%  Similarity=0.261  Sum_probs=50.2

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCC----eeeecCCce-------eeeEeeCCeeeEEEEEEeecCCCC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG----DMIITGDDY-------EDSRLINGYSCHMTLKIRSILSHQ  247 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~----~~~~~~~~~-------~~~~~~~~~~~~s~L~i~~~~~~d  247 (314)
                      ++.|....+.+|++++|.|...+.-...+.|++...    ..+......       +.+...  ......|.|.+++.+|
T Consensus         5 tQ~P~sv~~~~G~svtl~C~~s~~~~~~i~WYrQ~pg~~~~~l~~~~~~~~~~~~~~fs~~~--~~~~~~L~I~~~~~~D   82 (119)
T d1f3rb2           5 TQSPSLLSASVGDRVTLSCKGSQNINNYLAWYQQKLGEAPKLLIYNTNSLQTGIPSRFSGSG--SGTDYTLTISSLQPED   82 (119)
T ss_dssp             CEETSEECCCTTCCEEEEEECSSCCBTCEEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE--EBTEEEEEECSCCGGG
T ss_pred             EccCCEEEECCCCCEEEEEEeCCCCcceeEEeeeecccccEEEEEeeccccCceeeeecccC--CCCEEEEEcccCccCC
Confidence            345667789999999999998776666788987421    111111110       111111  1123589999999999


Q ss_pred             CeEEEEEEee
Q psy15734        248 FGSYRCVAVN  257 (314)
Q Consensus       248 ~G~Y~C~a~n  257 (314)
                      +|.|.|.+..
T Consensus        83 savYyCa~~~   92 (119)
T d1f3rb2          83 VATYFCYQYN   92 (119)
T ss_dssp             CSEEEEEEES
T ss_pred             CeEEEeeccC
Confidence            9999997653

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.23  E-value=4.2e-06  Score=53.94  Aligned_cols=73  Identities=16%  Similarity=0.347  Sum_probs=44.4

Q ss_pred             cCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e----eee--eecCcCEEEEeCCc-eeEEEEEeeecCCCCeE
Q psy15734         35 VGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H----HKV--VTQNKRVSITFNDH-RSWFLHLRDVQETDRGW  101 (314)
Q Consensus        35 ~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~----~~~--~~~~~~~~~~~~~~-~~~~L~i~~~~~~d~G~  101 (314)
                      +|+++.|.|++++.  ....+.|+|... +.++-.   .    ...  ....+|+.+..+.. +...|.|.+++.+|++.
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~tiS~D~s~~t~~L~~~sL~~eDTAv   80 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATLTVDKPSSTAYMQLSSLTSEDSAV   80 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEEEC----CEEEEEECCC---CCSE
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEEeccccccEEEeeeeeccccccEE
Confidence            58999999999874  446899998642 111111   0    001  11235788776543 34579999999999999


Q ss_pred             EEEEEe
Q psy15734        102 YMCQIN  107 (314)
Q Consensus       102 Y~C~~~  107 (314)
                      |.|...
T Consensus        81 YYCAr~   86 (103)
T d1oari_          81 YYCARM   86 (103)
T ss_dssp             EEEEEE
T ss_pred             EEeEEE
Confidence            999853

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.23  E-value=1.7e-05  Score=50.84  Aligned_cols=77  Identities=6%  Similarity=-0.038  Sum_probs=49.6

Q ss_pred             CCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCe
Q psy15734         21 MPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRG  100 (314)
Q Consensus        21 ~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G  100 (314)
                      +|.+...|. ..|..|++|+|.|.... ....+.++|++..........         ..........+.|.+++..|+|
T Consensus         2 KPsLsa~P~-~~V~~G~~VTl~C~~~~-~~~~f~L~keg~~~~~~~~~~---------~~~~~~~~a~F~l~~v~~~~~G   70 (96)
T d1nkra1           2 KPSLLAHPG-PLVKSEETVILQCWSDV-MFEHFLLHREGMFNDTLRLIG---------EHHDGVSKANFSISRMTQDLAG   70 (96)
T ss_dssp             CCEEEEESC-SEEETTCCEEEEEEESS-CCSEEEEEEESSSCEEEEEEC---------EEETTEEEEEEEESSCCGGGCE
T ss_pred             CCEEEeeCC-CccCCCCcEEEEECCCC-CCCEEEEEECCCcCCceeeee---------eecCCceEEEEEEcccCcccCe
Confidence            466666664 44889999999999864 445888888654321110000         0011111226999999999999


Q ss_pred             EEEEEEec
Q psy15734        101 WYMCQINT  108 (314)
Q Consensus       101 ~Y~C~~~~  108 (314)
                      .|+|....
T Consensus        71 ~Y~C~y~~   78 (96)
T d1nkra1          71 TYRCYGSV   78 (96)
T ss_dssp             EEEEEEEB
T ss_pred             EEEEEEEc
Confidence            99998743

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=98.23  E-value=3.3e-06  Score=55.91  Aligned_cols=80  Identities=15%  Similarity=0.385  Sum_probs=53.7

Q ss_pred             CcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEee-----e--eee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIH-----H--KVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~-----~--~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|.++|..  ...+.|+|... +.++-..     .  ..+  ...+|+.+..+.. +...|.|.++
T Consensus         7 sG~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~nt~~L~i~~L   86 (123)
T d1mqkh_           7 SGGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAKNTLYLQMSSL   86 (123)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGGTEEEEEECSC
T ss_pred             ECCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcccccccceeee
Confidence            3445688899999999998753  46789998642 2221110     0  001  1235788876543 3457999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        87 ~~eDtAvYYCAr~   99 (123)
T d1mqkh_          87 KSEDTAMYYCVRH   99 (123)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             ccCcccceeEEec
Confidence            9999999999764

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=98.22  E-value=3e-06  Score=56.39  Aligned_cols=79  Identities=13%  Similarity=0.295  Sum_probs=53.9

Q ss_pred             cceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEE---Ee---e-eeee--ecCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         29 ANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTIL---SI---H-HKVV--TQNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~---~~---~-~~~~--~~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ..-.+++|+++.|.|.+++.  ....+.|+|... +.++   ..   . ...+  .-.+|+.+..+.. +...|.|.+++
T Consensus         7 G~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~~t~yLq~~sL~   86 (124)
T d1zvya1           7 GGGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAKNMAYLRMDSVK   86 (124)
T ss_dssp             CCEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGGTEEEEEECSCC
T ss_pred             CCceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEecccccceeeceecccc
Confidence            34567889999999999874  456899999642 1111   11   0 0111  1246888876543 34579999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734         96 ETDRGWYMCQIN  107 (314)
Q Consensus        96 ~~d~G~Y~C~~~  107 (314)
                      .+|++.|.|...
T Consensus        87 ~eDtAvYYCAr~   98 (124)
T d1zvya1          87 SEDTAIYTCGAT   98 (124)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             CCcceEEEEeec
Confidence            999999999863

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.22  E-value=6e-06  Score=53.33  Aligned_cols=78  Identities=13%  Similarity=0.128  Sum_probs=47.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...+..+ |..|++|+|.|.... ....+.++|++........    ..    ...........+.|.+++..|+
T Consensus         3 pkPsLsa~P~~~-v~~G~~VTL~C~~~~-~~~~f~L~k~g~~~~~~~~----~~----~~~~~~~~~a~F~l~~v~~~~~   72 (98)
T d1ugna2           3 IKPTLSAQPSPV-VNSGGNVTLQCDSQV-AFDGFILCKEGEDEHPQCL----NS----QPHARGSSRAIFSVGPVSPSRR   72 (98)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECSS-CCSEEEEEEC------CEE----EC----------CCEEEEEECCCCTTSC
T ss_pred             CCCEEEeeCCCc-cCCCCcEEEEeCCCC-CCCEEEEEECCCcCCcEee----ee----EEcCCCceEEEEEeeecccCCC
Confidence            467777777555 999999999999854 4457777885432211000    00    0000011112699999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|+|...
T Consensus        73 G~Y~C~y~   80 (98)
T d1ugna2          73 WWYRCYAY   80 (98)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEeeE
Confidence            99999874

>d2esve1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.21  E-value=4.6e-06  Score=55.43  Aligned_cols=22  Identities=27%  Similarity=0.436  Sum_probs=19.7

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      +.|.|.++..+|+|.|.|.+..
T Consensus        73 ~~L~i~~~~~~Dsa~YyCa~~~   94 (111)
T d2esve1          73 STLKVQPAELEDSGVYFCASSQ   94 (111)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCcccCCCceEEEeeeC
Confidence            4899999999999999998654

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.21  E-value=5.3e-06  Score=54.85  Aligned_cols=80  Identities=15%  Similarity=0.315  Sum_probs=54.6

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEE---ee----eee--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILS---IH----HKV--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~---~~----~~~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.++-   ..    ...  ..-.+|+.+..+.. +...|.+.+
T Consensus         6 esG~~~~kPG~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~~L~~~s   85 (124)
T d1yedb1           6 QSGPELVRPGTSVKLSCKTSGYIFTSYWIHWLKQSSGQGLEWIARIYPGTGGTYYNEKFKGKATLTADKSSSTAYMQLSS   85 (124)
T ss_dssp             ECCCEEECTTCEEEEEEEEESSCGGGSCEEEEEECSSSCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEEES
T ss_pred             eeCCceECCCCCEEEEEEEcCCCccCCccccceECCCCceeeeeeccccccccccccccceeEEEEccCCcceEEecccc
Confidence            4455668899999999999885  346899998632 11111   00    001  11246888876543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|+|.-
T Consensus        86 L~~eDTAvYYCAR   98 (124)
T d1yedb1          86 LKSEDSAVYFCTR   98 (124)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCcceEEEecc
Confidence            9999999999975

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.21  E-value=4.1e-06  Score=56.04  Aligned_cols=80  Identities=18%  Similarity=0.337  Sum_probs=54.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe---e---e-ee--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI---H---H-KV--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~---~---~-~~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      ++....+.+|+++.|.|++++.  ....+.|+|... +.++-.   .   . ..  ..-.+|+.+..+.. +...|.+.+
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~~t~yL~~~s   85 (130)
T d1rzga1           6 QSGAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADESTSTAYMELSS   85 (130)
T ss_dssp             ECCCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEecccccceEEeeeee
Confidence            4445668899999999999875  446899998632 111111   0   0 00  11235888876543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtA~YYCAr   98 (130)
T d1rzga1          86 LRSEDTAVFYCAS   98 (130)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCccEEEEEEE
Confidence            9999999999985

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.21  E-value=9.5e-06  Score=54.53  Aligned_cols=77  Identities=10%  Similarity=0.141  Sum_probs=46.6

Q ss_pred             eEEEcCCcEEEEEEecCC--Cce-EEEEEEcCcee---EEEeeee----eeecCcCEEEEeC-CceeEEEEEeeecCCCC
Q psy15734         31 VTATVGKEALMACVVENL--REY-KVAWVKMITQT---ILSIHHK----VVTQNKRVSITFN-DHRSWFLHLRDVQETDR   99 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~--~~~-~v~W~~~~~~~---~~~~~~~----~~~~~~~~~~~~~-~~~~~~L~i~~~~~~d~   99 (314)
                      ..+.+|++++|.|..++.  ... .+.|++..+..   +......    ......++.+..+ .....+|.|.+++.+|+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~l~~~Ds   89 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGNESVTFYLQNLYVNQT   89 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECSSEEEEEEESCCGGGC
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCCCeEEEEECCCCcccC
Confidence            457789999999998653  233 34555543322   2111110    0112234454433 33456899999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|.|.+.
T Consensus        90 avYyCa~~   97 (118)
T d1yjdc1          90 DIYFCKIE   97 (118)
T ss_dssp             EEEEEEEE
T ss_pred             eEEEEEEe
Confidence            99999874

>d1qfoa_ b.1.1.1 (A:) N-terminal domain of sialoadhesin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: N-terminal domain of sialoadhesin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.21  E-value=1.2e-06  Score=59.06  Aligned_cols=78  Identities=13%  Similarity=0.137  Sum_probs=45.7

Q ss_pred             CCcceeecCccEEEEEEEeec---C-C--ceeEEecCCCe---eee-cCC--------ceeeeEeeCCeeeEEEEEEeec
Q psy15734        182 NQLEGAFVSQTVELHCHTEAF---P-A--SLNYWTNEKGD---MII-TGD--------DYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~---p-~--p~~~W~~~~~~---~~~-~~~--------~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      |..+.+.+|++|.|.|.....   + .  -.+.|++....   ... ...        ..+.....+......+|.|.++
T Consensus         7 P~~v~~~~G~~V~l~C~f~~p~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~sL~I~~v   86 (118)
T d1qfoa_           7 PKNVQGLSGSCLLIPCIFSYPADVPVSNGITAIWYYDYSGKRQVVIHSGDPKLVDKRFRGRAELMGNMDHKVCNLLLKDL   86 (118)
T ss_dssp             CSEEEEETTSCEEECCEEECCTTSCC--CCEEEEEESTTTTCEEEEESSCGGGSCTTTTTTEEECSCGGGTBCCEEECSC
T ss_pred             CCEEEEecCCcEEEEEEEeeccCCCCcceEEEEEEeeceeccceeeeeccccccccccCCCeEEEEeCcCCEEEEEECCC
Confidence            456789999999999998631   1 1  23456653221   111 110        1111111111112448999999


Q ss_pred             CCCCCeEEEEEEeeCC
Q psy15734        244 LSHQFGSYRCVAVNAL  259 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~~  259 (314)
                      +.+|+|.|.|.+....
T Consensus        87 ~~~DsG~Y~C~v~~~~  102 (118)
T d1qfoa_          87 KPEDSGTYNFRFEISD  102 (118)
T ss_dssp             CGGGCEEEEEEEECC-
T ss_pred             ChhHCEEEEEEEEeCC
Confidence            9999999999997653

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.21  E-value=2.5e-06  Score=57.68  Aligned_cols=80  Identities=16%  Similarity=0.270  Sum_probs=53.3

Q ss_pred             CcceEEEcCCcEEEEEEecCCC----ceEEEEEEcCc-e---eEEEeeee---e--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         28 VANVTATVGKEALMACVVENLR----EYKVAWVKMIT-Q---TILSIHHK---V--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~----~~~v~W~~~~~-~---~~~~~~~~---~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      .....+.+|++++|.|.+++..    ...+.|+|... .   .+......   .  ..-.+|+.+..+.. +...|.|.+
T Consensus         7 sg~~~vkpg~Sl~LsC~~SG~~~s~~~~~~~WyRQ~pG~~le~l~~i~~~~~~~y~~~~k~Rftis~d~s~~~~~L~i~~   86 (132)
T d1tjgh1           7 SGPPLVKPTQTLTLTCSFSGFSLSDFGVGVGWIRQPPGKALEWLAIIYSDDDKRYSPSLNTRLTITKDTSKNQVVLVMTR   86 (132)
T ss_dssp             ECCSEECTTCCEEEEEEEESSCTTSTTCEEEEEEECTTSCCEEEEEEETTSCEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             ECCeeECCCCCeEEEEEEeCCCcCCCCCceEEEEECCCcccEEEEEecCCCccEeeeeeeecceecccccccEEEccccc
Confidence            3345688899999999987642    24689998632 1   12111100   0  11246888776543 346799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYYCAr~  100 (132)
T d1tjgh1          87 VSPVDTATYFCAHR  100 (132)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCcccceEEEEEEe
Confidence            99999999999864

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=98.20  E-value=6.3e-06  Score=55.22  Aligned_cols=79  Identities=13%  Similarity=0.335  Sum_probs=53.3

Q ss_pred             cceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-e---eEEEeeee---------ee--ecCcCEEEEeCC-ceeEEEE
Q psy15734         29 ANVTATVGKEALMACVVENL--REYKVAWVKMIT-Q---TILSIHHK---------VV--TQNKRVSITFND-HRSWFLH   90 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~---~~~~~~~~---------~~--~~~~~~~~~~~~-~~~~~L~   90 (314)
                      ..-.+++|+++.|.|.+++.  ....+.|+|... +   .+......         .+  ...+|+.+..+. .+...|.
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~~~~~L~   87 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAKNTVNLQ   87 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGGTEEEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCceEEEEe
Confidence            34557789999999999875  447899999632 1   12111100         01  123588887653 3356799


Q ss_pred             EeeecCCCCeEEEEEEe
Q psy15734         91 LRDVQETDRGWYMCQIN  107 (314)
Q Consensus        91 i~~~~~~d~G~Y~C~~~  107 (314)
                      |.+++.+|++.|.|...
T Consensus        88 i~~l~~eDtAvYYCAr~  104 (127)
T d1i3ua_          88 MNSLKPEDTAVYYCAAK  104 (127)
T ss_dssp             ECSCCGGGCEEEEEEEE
T ss_pred             eecccccceeEEEEEEE
Confidence            99999999999999863

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=98.20  E-value=5.3e-06  Score=54.45  Aligned_cols=79  Identities=15%  Similarity=0.310  Sum_probs=53.6

Q ss_pred             cceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee------eee--ecCcCEEEEeCCc-eeEEEEEeeecC
Q psy15734         29 ANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH------KVV--TQNKRVSITFNDH-RSWFLHLRDVQE   96 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~------~~~--~~~~~~~~~~~~~-~~~~L~i~~~~~   96 (314)
                      ....+.+|+++.|.|.+++.  ....+.|+|... +.++-...      ..+  ...+|+.+..+.. +...|.|.+++.
T Consensus         8 g~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwl~~i~~~g~t~y~~s~kgR~tiSrD~s~nt~~L~i~~l~~   87 (118)
T d1lo4h1           8 GGDLVKPGGSLTLSCEASGFTLRTYGMSWVRQTPQMRLEWVASISYGGLLYFSDSVKGRFTISRDIVRNILTLQMSRLRS   87 (118)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTSEEEEEEECTTCCEEEEEEECTTCCEEECTTTBTTBEEEEETTTTEEEEEECSCCG
T ss_pred             CCceECCCCCeEEEEEECCCcccCCCcccccCCCCcceeeeeecccccchhhccccceeEEEeccccceeeeeccccccC
Confidence            34557889999999999875  457899999642 22211110      001  1134777776543 346799999999


Q ss_pred             CCCeEEEEEEe
Q psy15734         97 TDRGWYMCQIN  107 (314)
Q Consensus        97 ~d~G~Y~C~~~  107 (314)
                      +|++.|.|.-.
T Consensus        88 eDtA~YyCAr~   98 (118)
T d1lo4h1          88 EDTAIYYCARG   98 (118)
T ss_dssp             GGCEEEEEEEE
T ss_pred             CcceEEEeccc
Confidence            99999999753

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.20  E-value=5.8e-06  Score=54.88  Aligned_cols=80  Identities=15%  Similarity=0.344  Sum_probs=54.3

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------eee--ecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KVV--TQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~~--~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      ...-.+.+|+++.|.|.+++.  ....+.|+|... +.++-...       ..+  .-.+|+.+..+.. +...|.|.++
T Consensus         7 SG~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~~t~~Lqm~sL   86 (125)
T d1op3h1           7 SGGGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLEDFVYLQMHKM   86 (125)
T ss_dssp             ECCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCccceEeeeeecc
Confidence            334568899999999999874  346799999642 22211100       001  1235888876543 4567999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        87 ~~eDTAvYYCAr~   99 (125)
T d1op3h1          87 RVEDTAIYYCARK   99 (125)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             CCccceeEeEeec
Confidence            9999999999853

>d1ncwl1 b.1.1.1 (L:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.20  E-value=3.8e-06  Score=55.82  Aligned_cols=76  Identities=20%  Similarity=0.345  Sum_probs=48.9

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecC-----CceeEEecCCC----eeeecC---------CceeeeEeeCCeeeEEEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFP-----ASLNYWTNEKG----DMIITG---------DDYEDSRLINGYSCHMTLK  239 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p-----~p~~~W~~~~~----~~~~~~---------~~~~~~~~~~~~~~~s~L~  239 (314)
                      +++.|....+.+|++++|.|.+++..     ...+.|++...    +.+...         .++...  ..+  ....|.
T Consensus         4 lTQsP~sls~~~G~svtl~C~~s~~~~~~~~~~~~~WYrQ~pg~~~~~l~~~~~~~~~g~~~~fs~~--~~~--~~~~L~   79 (112)
T d1ncwl1           4 MTQSPKTISVTIGQPASISCKSSQRLLNSNGKTFLNWLLQRPGQSPKRLIYLGTKLDSGVPDRFTGS--GSG--TDFTLK   79 (112)
T ss_dssp             EEEECSEEEEETTSCEEEEEEESSCCBCTTSCBCEEEEEECTTSCEEEEEETTTEECTTCCTTEEEE--EET--TEEEEE
T ss_pred             EeCcCCEEEECCCCCEEEEEEECcccccCCCCcccEEEEcCCCCceEEEEeccCcCCCCcCceEEee--CCC--CEEEEE
Confidence            45566778899999999999976433     34678987431    111111         111111  111  235899


Q ss_pred             EeecCCCCCeEEEEEEee
Q psy15734        240 IRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       240 i~~~~~~d~G~Y~C~a~n  257 (314)
                      |.+++.+|+|.|.|...+
T Consensus        80 I~~~~~eDsAvYYC~~~~   97 (112)
T d1ncwl1          80 ISRVEAEDLGVYYCWQGT   97 (112)
T ss_dssp             ESSCCGGGCEEEEEEECS
T ss_pred             ECccccCcCEeEEEEcCC
Confidence            999999999999996543

>d1fp5a1 b.1.1.2 (A:336-438) Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 3, CH3-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.19  E-value=1.6e-06  Score=56.86  Aligned_cols=82  Identities=13%  Similarity=0.193  Sum_probs=54.3

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCc----eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEE
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPAS----LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p----~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      +..+|....+..+..++|.|.+.|..+.    .+.|+++++...... ........++ |...+.|.|..-.......|+
T Consensus         4 ~l~pPs~~~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~-~~~~~~~~~gt~s~~S~L~v~~~~w~~g~~~t   82 (103)
T d1fp5a1           4 YLSRPSPFDLFIRKSPTITCLVVDLAPSKGTVNLTWSRASGKPVNHS-TRKEEKQRNGTLTVTSTLPVGTRDWIEGETYQ   82 (103)
T ss_dssp             EEECCCHHHHHTTCCCEEEEEEEESSCCSSCCEEEEEETTCCCCCCC-EEEEEEETTTEEEEEEEEECCHHHHHTTCCEE
T ss_pred             EEeCcCHHHHhhCCCeEEEEEEEeeECCCceEEEEEcCCCceecccE-EcccEECCCCCEEEEEEEEEcHHHhCCCCeEE
Confidence            4456666677789999999999995433    556877655433222 2222223333 777888888766665567899


Q ss_pred             EEEeeCCC
Q psy15734        253 CVAVNALG  260 (314)
Q Consensus       253 C~a~n~~g  260 (314)
                      |++.+...
T Consensus        83 C~V~H~~l   90 (103)
T d1fp5a1          83 CRVTHPHL   90 (103)
T ss_dssp             EEEECSSC
T ss_pred             EEEEECCC
Confidence            99998653

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.19  E-value=8.6e-06  Score=54.60  Aligned_cols=81  Identities=21%  Similarity=0.386  Sum_probs=55.3

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee------e-e--eecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH------K-V--VTQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~------~-~--~~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.++-...      . .  ..-.+|+.+..+.. +...|.+.+
T Consensus         5 esG~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~~t~~L~~~~   84 (133)
T d1rzfh1           5 QSGAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADESTRTVYLHLRG   84 (133)
T ss_dssp             ECCCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCcceeEEeecc
Confidence            3445568899999999999874  457899998632 22211100      0 1  11246888887644 356799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        85 L~~eDtA~YYCAr~   98 (133)
T d1rzfh1          85 LRSDDTAVYYCASN   98 (133)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             CCCCCCEEEEeeec
Confidence            99999999999753

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.19  E-value=4.4e-06  Score=55.55  Aligned_cols=80  Identities=18%  Similarity=0.383  Sum_probs=54.4

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEe------e-eeee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSI------H-HKVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~------~-~~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      ++....+++|+++.|.|.+++.  ....+.|+|... +.++-.      . ...+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~nt~yL~~~~   85 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSANTAYMELRS   85 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGGTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCceEEEEEEEc
Confidence            4556678999999999999885  346789998632 111110      0 0011  1235788877543 345799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|.|.-
T Consensus        86 L~~eDtAvYYCAR   98 (127)
T d1n0xh1          86 LRSADTAVYYCAR   98 (127)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             cCCCCceEEEEEe
Confidence            9999999999974

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=98.19  E-value=4.5e-06  Score=55.20  Aligned_cols=79  Identities=15%  Similarity=0.391  Sum_probs=53.3

Q ss_pred             cceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEE---Eeee------eee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         29 ANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTIL---SIHH------KVV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~---~~~~------~~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      ..-.+++|+++.|.|.+++..  ...+.|+|... +.++   ....      ..+  .-.+|+.+..+.. +...|.|.+
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~nt~~L~~~s   87 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQSILYLQMNT   87 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTTTEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeecccceeccceee
Confidence            345688899999999998753  45799998632 1111   1100      001  1235888876544 345799999


Q ss_pred             ecCCCCeEEEEEEe
Q psy15734         94 VQETDRGWYMCQIN  107 (314)
Q Consensus        94 ~~~~d~G~Y~C~~~  107 (314)
                      ++.+|++.|.|...
T Consensus        88 L~~eDTAvYYCar~  101 (122)
T d1q9rb1          88 LRAEDSATYYCARD  101 (122)
T ss_dssp             CCGGGCEEEEEEEC
T ss_pred             eccCcceEEEEEec
Confidence            99999999999863

>d1nfde2 b.1.1.2 (E:108-215) Immunoglobulin light chain lambda constant domain, CL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.19  E-value=3.3e-07  Score=60.35  Aligned_cols=77  Identities=10%  Similarity=0.102  Sum_probs=51.3

Q ss_pred             cCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCceeE
Q psy15734        189 VSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGETDGF  265 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~~~~  265 (314)
                      .++.+.|.|.+.|+.+  ..|.|++++...............++.|...+.|.|..-..++...|+|.|.+......++
T Consensus        19 ~~~~~~l~C~~~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~~~tys~~S~l~v~~~~w~~~~~ytC~V~H~~~~~~k~   97 (104)
T d1nfde2          19 RTNKATLVCLVNDFYPGSATVTWKANGATINDGVKTTKPSKQGQNYMTSSYLSLTADQWKSHNRVSCQVTHEGETVEKS   97 (104)
T ss_dssp             HTTEECCCEEEEEEBSSCCEEEEEETTEEECSSCBCCCCBCSSSCEEEEEBCCEEHHHHHTCSCEEEEEECTTTTCCCC
T ss_pred             cCCcEEEEEEEEEeeCCCCEEEEEECCEECCCCEEeccccCCCceEEEEEEEEEcHHHcCCCCEEEEEEEECCCcEEEE
Confidence            4567899999999543  3788999754433221212222233347888899998887777778999999976554433

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.19  E-value=5.4e-06  Score=55.10  Aligned_cols=79  Identities=15%  Similarity=0.369  Sum_probs=53.9

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------ee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|.+++.  ....+.|+|... +.++-...       ..  ..-.+|+.+..+.. +...|.|.++
T Consensus         7 Sg~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~nt~~L~~~~L   86 (126)
T d1dfbh1           7 SGGGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAKNSLYLQMNSL   86 (126)
T ss_dssp             ECCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCCcEEEeeeeee
Confidence            344568889999999999875  346799999642 21211100       01  11246888887643 3467999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|..
T Consensus        87 ~~eDtavYYCAr   98 (126)
T d1dfbh1          87 RAEDMALYYCVK   98 (126)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccCcceEEEEEe
Confidence            999999999975

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=98.19  E-value=8.1e-06  Score=52.95  Aligned_cols=70  Identities=11%  Similarity=0.027  Sum_probs=44.5

Q ss_pred             eecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCc-eeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDD-YEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~-~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +..|+..+|.|.+.|+-+  ..+.|++++. .+..... .......+ .|...+.|.+..   .+...|+|.+....-
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng~-~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~sl   89 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNGR-PVTEGVSETVFLPRDDHLFRKFHYLTFLP---STDDFYDCEVDHWGL   89 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTE-EECSSEEECCCEECSSSCEEEEEEEEECC---CTTCCEEEEEECTTC
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECCe-ecCCCcEeCeEEECCCCcEEEEEEeEEcC---CCCCEEEEEEEECCC
Confidence            456788899999999643  3778999743 3322211 11122233 377788888765   334579999988643

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.19  E-value=4e-06  Score=55.25  Aligned_cols=80  Identities=15%  Similarity=0.332  Sum_probs=54.2

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcC-ceeEEEeee---------ee--eecCcCEEEEeCCc-eeEEEEE
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMI-TQTILSIHH---------KV--VTQNKRVSITFNDH-RSWFLHL   91 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~-~~~~~~~~~---------~~--~~~~~~~~~~~~~~-~~~~L~i   91 (314)
                      +.....+++|+++.|.|++++.  ....+.|+|.. ++.++-...         ..  ..-.+|+.+..+.. +...|.+
T Consensus         6 eSG~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~t~Ya~s~kgR~tiSrD~s~nt~yL~~   85 (121)
T d1nfdf1           6 ESGGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQAPGKGLEWVGRIKNIPNNYATEYADSVRGRFTISRDDSRNSIYLQM   85 (121)
T ss_dssp             EECCEEECTTCEEEEEEEEESSCGGGEEEEEEEECTTSCEEEEEEECCTTTTTCEEECGGGTTTBCCEECTTTSEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCcCCceeeceecCCccceeeeeecccccccccccchheeeeeEEccccccceeecee
Confidence            4455678999999999999885  34678999963 222211100         00  11235777776543 3457999


Q ss_pred             eeecCCCCeEEEEEE
Q psy15734         92 RDVQETDRGWYMCQI  106 (314)
Q Consensus        92 ~~~~~~d~G~Y~C~~  106 (314)
                      .+++.+|++.|+|..
T Consensus        86 ~~L~~eDTAvYYCAr  100 (121)
T d1nfdf1          86 NRLRVDDTAIYYCTR  100 (121)
T ss_dssp             ESCCGGGCEECEEEE
T ss_pred             cccCCCcceEEEEec
Confidence            999999999999975

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=98.18  E-value=4.8e-06  Score=55.59  Aligned_cols=80  Identities=19%  Similarity=0.421  Sum_probs=54.3

Q ss_pred             CcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEEEeee-------ee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENL--REYKVAWVKMIT-QTILSIHH-------KV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~~~~~-------~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+++|+++.|.|++++.  ....+.|+|... +.++-...       ..  ..-.+|+.+..+.. +...|.|.++
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~~t~yL~~~~L   86 (127)
T d2fb4h1           7 SGGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSKNTLFLQMDSL   86 (127)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCccEEEeeeeee
Confidence            334567889999999999875  346799998642 22211100       00  11246888877644 3467999999


Q ss_pred             cCCCCeEEEEEEe
Q psy15734         95 QETDRGWYMCQIN  107 (314)
Q Consensus        95 ~~~d~G~Y~C~~~  107 (314)
                      +.+|++.|.|...
T Consensus        87 ~~eDTA~YYCAr~   99 (127)
T d2fb4h1          87 RPEDTGVYFCARD   99 (127)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eecceeEEEEEEe
Confidence            9999999999853

>d1ogae1 b.1.1.1 (E:5-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.18  E-value=2.2e-06  Score=57.38  Aligned_cols=79  Identities=16%  Similarity=0.255  Sum_probs=49.1

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe---eee----cCCceee------eEeeCCeeeEEEEEEeecCC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD---MII----TGDDYED------SRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~---~~~----~~~~~~~------~~~~~~~~~~s~L~i~~~~~  245 (314)
                      ++.|....+.+|++++|.|..+ .....+.|++....   .++    .......      ............|.|.++..
T Consensus         3 tQsP~~~~~~~G~svtl~C~~s-~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~I~~~~~   81 (114)
T d1ogae1           3 TQSPKYLFRKEGQNVTLSCEQN-LNHDAMYWYRQDPGQGLRLIYYSQIVNDFQKGDIAEGYSVSREKKESFPLTVTSAQK   81 (114)
T ss_dssp             ECSCSEEEEETTCCEEECCEEC-SCCSEEEEEEECTTCCEEEEEEESSTTCCEECSSCTTEEECCSSTTBCCEEECSCCS
T ss_pred             EEcCCeEEEcCCCCEEEEEEEe-cCCCcEEEEeeccccCCcceeeeeeeeccccccCCCceEEEcccCCeEEEEECcCCc
Confidence            4566777899999999999976 34567889974321   111    0000000      00001111234799999999


Q ss_pred             CCCeEEEEEEeeC
Q psy15734        246 HQFGSYRCVAVNA  258 (314)
Q Consensus       246 ~d~G~Y~C~a~n~  258 (314)
                      +|+|.|.|.+...
T Consensus        82 ~DSa~YyCa~~~~   94 (114)
T d1ogae1          82 NPTAFYLCASSSR   94 (114)
T ss_dssp             CCCEEEEEEEESS
T ss_pred             CCceeEEEeeccC
Confidence            9999999976543

>d1rzfl1 b.1.1.1 (L:2-108) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 2 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 2 [TaxId: 9606]

Probab=98.18  E-value=8.3e-06  Score=54.11  Aligned_cols=23  Identities=22%  Similarity=0.345  Sum_probs=20.4

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeC
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        72 ~~L~I~~~~~~Dsa~YyCA~~~~   94 (111)
T d1rzfl1          72 ATLGITGLQTGDEADYYCGTWDS   94 (111)
T ss_dssp             EEEEESSCCGGGCSEEEEEEEET
T ss_pred             eeeEEeeeccccCcceEEeecCC
Confidence            58999999999999999987653

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=98.18  E-value=3.6e-06  Score=56.50  Aligned_cols=77  Identities=16%  Similarity=0.331  Sum_probs=51.0

Q ss_pred             ceEEEcCCcEEEEEEecCC----CceEEEEEEcC--c--eeEEEeee---eee--ecCcCEEEEeCCc-eeEEEEEeeec
Q psy15734         30 NVTATVGKEALMACVVENL----REYKVAWVKMI--T--QTILSIHH---KVV--TQNKRVSITFNDH-RSWFLHLRDVQ   95 (314)
Q Consensus        30 ~~~v~~g~~~~l~C~~~~~----~~~~v~W~~~~--~--~~~~~~~~---~~~--~~~~~~~~~~~~~-~~~~L~i~~~~   95 (314)
                      ...+.+|++++|.|.++|.    ....+.|+|..  +  +.+.....   ...  .-.+|+.+..+.. +...|.|.+++
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~~t~~L~i~~l~   88 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSSNQVFLKITSVD   88 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTTTEEEEEECSCC
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCCcEEEcceeccc
Confidence            3467889999999998763    23567899852  1  11111111   001  1135788776543 34679999999


Q ss_pred             CCCCeEEEEEE
Q psy15734         96 ETDRGWYMCQI  106 (314)
Q Consensus        96 ~~d~G~Y~C~~  106 (314)
                      .+|++.|.|..
T Consensus        89 ~eDtAvYyCAr   99 (126)
T d1etzb1          89 TSDTATYHCAR   99 (126)
T ss_dssp             GGGCEEEEEEE
T ss_pred             ccccceEEEEE
Confidence            99999999985

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.18  E-value=6e-06  Score=53.52  Aligned_cols=70  Identities=10%  Similarity=0.015  Sum_probs=44.5

Q ss_pred             eecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ...|+.++|.|.+.|+.+.  .+.|++++.. .............++ |...+.|.+.   .++.+.|+|++....-
T Consensus        15 ~~~~~~~tL~C~v~gf~P~~i~V~W~~~g~~-~~~~~~~~~~~~~dgtf~~~s~l~v~---~~~~~~ytC~V~H~sl   87 (99)
T d1lk2b_          15 PENGKPNILNCYVTQFHPPHIEIQMLKNGKK-IPKVEMSDMSFSKDWSFYILAHTEFT---PTETDTYACRVKHDSM   87 (99)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETTEE-CTTCEEEEEEECTTCCEEEEEEEEEC---CCSSCCEEEEEECTTS
T ss_pred             ccCCCcEEEEEEEEEEECCCcEEEEeeCCee-cCCcEECceeECCCCCEEEEEEeEec---CcCCCEEEEEEEeCCC
Confidence            3468889999999996443  6789997543 322222222233333 6666677664   4556789999988643

>d1q9ra1 b.1.1.1 (A:1-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.2 [TaxId: 10090]

Probab=98.17  E-value=3.8e-06  Score=55.99  Aligned_cols=76  Identities=17%  Similarity=0.298  Sum_probs=49.3

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeec------CCceeEEecCCC---ee-eecC---------CceeeeEeeCCeeeEEE
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAF------PASLNYWTNEKG---DM-IITG---------DDYEDSRLINGYSCHMT  237 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~------p~p~~~W~~~~~---~~-~~~~---------~~~~~~~~~~~~~~~s~  237 (314)
                      ++++.|....+.+|++++|.|...+.      ....+.|++...   .. +...         .++...  .+  .....
T Consensus         3 ~~tQ~P~~v~~~~G~svtL~C~~s~~~~~~~~~~~~~~WYrq~~g~~p~ll~~~~~~~~~~~~~~~s~~--~s--~~~~~   78 (113)
T d1q9ra1           3 VMSQSPSSLAVSAGEKVTMSCKSSQSLLNSRTRKNYLAWYQQKPGQSPKLLIYWASTRESGVPDRFTGS--GS--GTDFT   78 (113)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSCCEETTTTEECEEEEEECTTSCCEEEEETTTEECTTSCTTEEEE--EE--TTEEE
T ss_pred             CEEccCCEEEECCCCCEEEEEEECCCcccCCCCCcceEEEecCCCCCCEEEEecccccCCCCCccEEEe--CC--CCeEe
Confidence            34566778889999999999987642      124578987421   11 1111         111111  11  12458


Q ss_pred             EEEeecCCCCCeEEEEEEe
Q psy15734        238 LKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~  256 (314)
                      |.|.+++.+|+|.|.|.+.
T Consensus        79 L~I~~l~~~Dsa~YyCA~~   97 (113)
T d1q9ra1          79 LTITSVQAEDLAVYYCKQS   97 (113)
T ss_dssp             EEESSCCGGGCEEEEEEEC
T ss_pred             EEecccccCCCeEEEeccc
Confidence            9999999999999999765

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.17  E-value=4.5e-06  Score=55.24  Aligned_cols=79  Identities=13%  Similarity=0.347  Sum_probs=53.8

Q ss_pred             CcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEe---e----eee--eecCcCEEEEeCCc-eeEEEEEeee
Q psy15734         28 VANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSI---H----HKV--VTQNKRVSITFNDH-RSWFLHLRDV   94 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~---~----~~~--~~~~~~~~~~~~~~-~~~~L~i~~~   94 (314)
                      .....+.+|+++.|.|.+++..  ...+.|+|... ..++-.   .    ...  ....+|+.+..+.. +...|.|.++
T Consensus         7 sg~~~vkpg~sl~LsC~~SG~s~s~y~~~W~RQ~PGkglewlg~i~~~~~~~~y~~~~kgR~tis~D~s~~~~~L~i~sL   86 (121)
T d1ol0a_           7 SGGGLVQPGGSLRLSCAASGFTFSSYAMSWFRQAPGKEREIVSAVSGSGGSTYYADSVRGRFTISRDNSKNTLYLQMNSL   86 (121)
T ss_dssp             EECEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTSCCEEECGGGTTTEEEEEETTTTEEEEEECSC
T ss_pred             ECCceECCCCCeEEEEEEcCcCCcCCceEcceeCCCcceeeeeecCCcccccccchheeeeeEEeccccceeEEeeeeec
Confidence            3445678899999999998753  46799998641 111111   0    001  12235888887643 3467999999


Q ss_pred             cCCCCeEEEEEE
Q psy15734         95 QETDRGWYMCQI  106 (314)
Q Consensus        95 ~~~d~G~Y~C~~  106 (314)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (121)
T d1ol0a_          87 RAEDTAVYYCAR   98 (121)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             ccccceEEEEEE
Confidence            999999999975

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=98.17  E-value=6.7e-06  Score=53.11  Aligned_cols=71  Identities=10%  Similarity=0.044  Sum_probs=39.5

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..++..+|.|.+.|+.++  .+.|++++................++ |...+.|.   +..++...|+|++.+..-.
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~~~s~l~---~~~~~~~~ytC~V~H~sl~   89 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQTLVMLE---TVPRSGEVYTCQVEHPSVT   89 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEEEEEEEE---CCCCTTCEEEEEEECTTCS
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEEEEEEee---EcCCCCCEEEEEEEECCCC
Confidence            456777899999996554  66899974332211111111222333 55555554   4567778999999987543

>d1kgce1 b.1.1.1 (E:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.17  E-value=5.5e-06  Score=55.15  Aligned_cols=22  Identities=27%  Similarity=0.363  Sum_probs=19.7

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      +.|.|.+++.+|+|.|.|.+..
T Consensus        73 ~~L~I~~~~~~Dsa~YyCa~~~   94 (112)
T d1kgce1          73 STLKIQRTQQEDSAVYLCASSL   94 (112)
T ss_dssp             EEEEESSCCGGGCEEEEEEEES
T ss_pred             EEEEECCCCcCCCEEEEEeeeC
Confidence            4899999999999999998753

>d1kgcd1 b.1.1.1 (D:2-117) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.16  E-value=3.7e-06  Score=56.02  Aligned_cols=75  Identities=13%  Similarity=0.134  Sum_probs=48.5

Q ss_pred             CCcceeecCccEEEEEEEeecC-CceeEEecCC-C--ee-eec-------CCceeeeEeeCCeeeEEEEEEeecCCCCCe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP-ASLNYWTNEK-G--DM-IIT-------GDDYEDSRLINGYSCHMTLKIRSILSHQFG  249 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p-~p~~~W~~~~-~--~~-~~~-------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G  249 (314)
                      |....+.+|++++|.|...+.. ...+.|++.. +  .. +..       ....+.....+  .....|.|.++..+|+|
T Consensus         5 P~~~~~~~G~svtl~C~~s~~~~~~~~~WYrQ~pg~~~~~i~~~~~~~~~~~~~~~~~~~~--~~~~~L~i~~~~~~Dsa   82 (112)
T d1kgcd1           5 PNSMESNEEEPVHLPCNHSTISGTDYIHWYRQLPSQGPEYVIHGLTSNVNNRMASLAIAED--RKSSTLILHRATLRDAA   82 (112)
T ss_dssp             CSEEEEETTSCEEEEEEESCCCTTCCEEEEEECTTSCCEEEEEESSSSEECSSEEEEECTT--SSEEEEEESSCCGGGCE
T ss_pred             CCEEEECCCCCEEEEEEEeCCCccccEEEEEECCCCCcceeeeecceeccccccceeeccc--CCeeEEEEeecccccce
Confidence            4457789999999999987644 4568899832 1  11 111       11111222222  23458999999999999


Q ss_pred             EEEEEEeeC
Q psy15734        250 SYRCVAVNA  258 (314)
Q Consensus       250 ~Y~C~a~n~  258 (314)
                      .|.|.+...
T Consensus        83 ~YyCa~~~~   91 (112)
T d1kgcd1          83 VYYCILPLA   91 (112)
T ss_dssp             EEEEECCCC
T ss_pred             eEeeeEecC
Confidence            999977543

>d1nfde1 b.1.1.1 (E:2-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=98.16  E-value=4.5e-06  Score=55.04  Aligned_cols=22  Identities=23%  Similarity=0.382  Sum_probs=19.8

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        69 ~~L~I~~l~~~Dsa~YyCA~~~   90 (108)
T d1nfde1          69 ATLTISGAQPEDEAAYYCLSSY   90 (108)
T ss_dssp             EEEEETTCCGGGCSEEEEEEEE
T ss_pred             eeeeEcCccccCCceEEEEeec
Confidence            4899999999999999998764

>d1cd0a_ b.1.1.1 (A:) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=98.15  E-value=1e-05  Score=53.74  Aligned_cols=23  Identities=17%  Similarity=0.403  Sum_probs=20.2

Q ss_pred             EEEEEEeecCCCCCeEEEEEEee
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ...|.|.+++.+|+|.|.|.+.+
T Consensus        73 ~~~L~i~~l~~~Dsa~YyCA~~~   95 (111)
T d1cd0a_          73 SASLTISGLKTEDEADYYCQSYD   95 (111)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEEE
T ss_pred             ccccccccCCcccCcEEEEeecc
Confidence            35999999999999999998654

>d1fo0b_ b.1.1.1 (B:) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.15  E-value=1.3e-05  Score=53.34  Aligned_cols=82  Identities=17%  Similarity=0.153  Sum_probs=50.9

Q ss_pred             eEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC---e-eeec---CCceeeeEee-CCee----eEEEEEEeecC
Q psy15734        177 MLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG---D-MIIT---GDDYEDSRLI-NGYS----CHMTLKIRSIL  244 (314)
Q Consensus       177 ~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~---~-~~~~---~~~~~~~~~~-~~~~----~~s~L~i~~~~  244 (314)
                      .+.+.|....+.+|++++|.|.....-...+.|++...   . .+..   .......... ..+.    ..+.|.|....
T Consensus         3 ~V~Q~P~~~~~~~G~~vtL~C~~~~~~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~f~~~~~~~~~l~l~~~~   82 (112)
T d1fo0b_           3 LLEQNPRWRLVPRGQAVNLRCILKNSQYPWMSWYQQDLQKQLQWLFTLRSPGDKEVKSLPGADYLATRVTDTELRLQVAN   82 (112)
T ss_dssp             SEEEECSEEECCTTCCEEEEEEESCTTCCEEEEEEECTTCCEEEEEECCSTTCEEEEEETTEEEEEEEEETTEEEEEEES
T ss_pred             eEEeCCCeEEECCCCCEEEEEEEecCCCCcEEEEeECCCCCccccceeccccccccccccccccccccccccEEEEecCC
Confidence            45566777788999999999998776667889997431   1 1111   0000000000 0011    11378899999


Q ss_pred             CCCCeEEEEEEeeC
Q psy15734        245 SHQFGSYRCVAVNA  258 (314)
Q Consensus       245 ~~d~G~Y~C~a~n~  258 (314)
                      .+|++.|.|.+...
T Consensus        83 ~~dsa~Y~Ca~~~~   96 (112)
T d1fo0b_          83 MSQGRTLYCTCSAD   96 (112)
T ss_dssp             CCSCEEEEEEEESS
T ss_pred             ccCCccEEEEEecC
Confidence            99999999987543

>d1yqvl1 b.1.1.1 (L:2-107) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=98.14  E-value=2e-06  Score=56.47  Aligned_cols=74  Identities=20%  Similarity=0.323  Sum_probs=48.6

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eeec---------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MIIT---------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~~---------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      +++.|....+.+|++++|.|..+.. ...+.|++....    .+..         ...+....    ......|.|.++.
T Consensus         3 vtQsP~~l~~~~G~~vtl~C~~s~~-~~~~~WYrQ~~g~~~~~~~~~~~~~~~~~~~~f~~~~----~~~~~~L~I~~~~   77 (104)
T d1yqvl1           3 LTQSPAIMSASPGEKVTMTCSASSS-VNYMYWYQQKSGTSPKRWIYDTSKLASGVPVRFSGSG----SGTSYSLTISSME   77 (104)
T ss_dssp             EEEESSEEEECTTCCEEEEEEESSC-CSCCEEEEECTTSCCEEEEETTTEECTTCCTTEEEEE----ETTEEEEEESSCC
T ss_pred             EeCcCCeEEECCCCCEEEEEEeCCC-CCccEEEEeeccCceEEEEecccccCCCcCceEEEec----CCCEEEEEecccC
Confidence            4567788889999999999987543 445789874311    1111         01111111    1124589999999


Q ss_pred             CCCCeEEEEEEe
Q psy15734        245 SHQFGSYRCVAV  256 (314)
Q Consensus       245 ~~d~G~Y~C~a~  256 (314)
                      .+|+|.|.|.+.
T Consensus        78 ~~Dsa~YyCa~~   89 (104)
T d1yqvl1          78 TEDAATYYCQQW   89 (104)
T ss_dssp             GGGCEEEEEEEC
T ss_pred             cccCCeEEEEec
Confidence            999999999764

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.13  E-value=1.7e-05  Score=50.66  Aligned_cols=69  Identities=19%  Similarity=0.291  Sum_probs=42.0

Q ss_pred             ecCccEEEEEEEeec-CCc-eeEEecCCCeeeecCCc-eeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        188 FVSQTVELHCHTEAF-PAS-LNYWTNEKGDMIITGDD-YEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~-~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..++.++|.|.+.|+ |.. .+.|++++......... .......++ |...+.|.+..   .|...|+|++.+..
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg~~~~~~~~~~~~~~~~~~~t~~~~s~l~v~~---~~~~~ytC~V~H~s   85 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVPP---GEEQRYTCQVEHPG   85 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETTEECCGGGSCCCEEEECTTSCEEEEEEEEECT---TCGGGEEEEEECTT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECCEECccCcccccceEeCCCceEEEEEEEEECC---CCCCEEEEEEEeCC
Confidence            356788999999995 543 77899975443222111 112222232 55556666543   45668999999863

>d1hxmb2 b.1.1.2 (B:124-230) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=98.13  E-value=6.8e-06  Score=54.12  Aligned_cols=80  Identities=13%  Similarity=0.184  Sum_probs=51.2

Q ss_pred             CCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ++.......+..++|.|.+.|+-+.  .+.|++++...............++.|...+.|.|..-...  ..|+|++.+.
T Consensus        15 ~Ps~~e~~~~~~~~l~Clv~~f~P~~i~v~W~~~g~~~~~~~~~~~~~~~~gt~~~~S~L~v~~~~w~--~~ytC~V~H~   92 (107)
T d1hxmb2          15 LPSIAETKLQKAGTYLCLLEKFFPDVIKIHWEEKKSNTILGSQEGNTMKTNDTYMKFSWLTVPEKSLD--KEHRCIVRHE   92 (107)
T ss_dssp             CCCGGGGGSSSCEEEEEEEEEESSCCEEEEEEESSSCCCCCCEECCCEECSSSEEEEEEEEECTGGGG--SCEEEEEEET
T ss_pred             CCCHHHHccCCcEEEEEEEeEEeCCceEEEEEECCeEccCCEEccceecCCCeEEEEEEEEEecccCC--CeEEEEEEEC
Confidence            3445556778899999999996544  66899975543322111112223344888888888665442  3799999987


Q ss_pred             CCCc
Q psy15734        259 LGET  262 (314)
Q Consensus       259 ~g~~  262 (314)
                      ....
T Consensus        93 s~~~   96 (107)
T d1hxmb2          93 NNKN   96 (107)
T ss_dssp             TSGG
T ss_pred             CCCC
Confidence            6544

>d1igtb4 b.1.1.2 (B:363-474) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=98.13  E-value=2.3e-06  Score=55.97  Aligned_cols=71  Identities=20%  Similarity=0.232  Sum_probs=46.8

Q ss_pred             cCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+..+.|.|.+.|+ |. ..+.|.+++...............++.|...+.|.|..-..+....|+|.+.+..
T Consensus        18 ~~~~~tl~C~v~gf~P~~i~v~W~~~g~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   90 (102)
T d1igtb4          18 TKKQVTLTCMVTDFMPEDIYVEWTNNGKTELNYKNTEPVLDSDGSYFMYSKLRVEKKNWVERNSYSCSVVHEG   90 (102)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEECSSEEECCCEECTTSCEEEEEEEEEEHHHHHTCCCEEEEEECTT
T ss_pred             cCCcEEEEEEEEEeECCCcEEEEEECCEEccCcEEccceeCCCCcEEEEEEEEECHHHcCCCCEEEEEEEeCC
Confidence            47789999999995 43 4778999753221111111111223348888999998777666678999998754

>d1w72l1 b.1.1.1 (L:1-107) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 5 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 5 [TaxId: 9606]

Probab=98.13  E-value=8.5e-06  Score=53.68  Aligned_cols=24  Identities=21%  Similarity=0.321  Sum_probs=20.8

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeC
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ...|.|.+++.+|+|.|.|.+...
T Consensus        69 ~~~L~I~~l~~~DsavYyCA~~~~   92 (109)
T d1w72l1          69 MATLTISRVEAGDEADYYCQVWDS   92 (109)
T ss_dssp             EEEEEESSCCGGGCEEEEEEEEET
T ss_pred             ccceEEeeeccCCCEEEEEEecCC
Confidence            348999999999999999987654

>d1j8he1 b.1.1.1 (E:2-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.12  E-value=9.2e-06  Score=54.12  Aligned_cols=77  Identities=18%  Similarity=0.279  Sum_probs=49.1

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCC---e-eeec--C----------CceeeeEeeCCeeeEEEEEEe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKG---D-MIIT--G----------DDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~---~-~~~~--~----------~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +.+.|....+.+|++++|.|.... ....+.|++...   . .+..  .          .++.... .+  .....|.|.
T Consensus         3 V~QsP~~~~~~~G~~v~l~C~~~~-~~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~~~~-~~--~~~~~L~i~   78 (113)
T d1j8he1           3 VTQSSRYLVKRTGEKVFLECVQDM-DHENMFWYRQDPGLGLRLIYFSYDVKMKEKGDIPEGYSVSR-EK--KERFSLILE   78 (113)
T ss_dssp             EEESCSEEEEETTCCEEECEEESS-CCSEEEEEEEETTTEEEEEEEESSTTCCEECSCCTTEEEEC-SS--TTBCEEEES
T ss_pred             EEccCCEEEECCCCCEEEEEEEcC-CccEEEeEEecCCCCcceeeeeeeeeeeecccccccceEEe-cc--CcEeeeEec
Confidence            456677778999999999998643 345788987321   1 1111  0          1111111 11  113489999


Q ss_pred             ecCCCCCeEEEEEEeeC
Q psy15734        242 SILSHQFGSYRCVAVNA  258 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~  258 (314)
                      ++..+|+|.|.|.+...
T Consensus        79 ~~~~~Dsa~YyCa~~~~   95 (113)
T d1j8he1          79 SASTNQTSMYLCASSST   95 (113)
T ss_dssp             SCCGGGCEEEEEEEECT
T ss_pred             cCccCCcccEEeeEccC
Confidence            99999999999988653

>d1u9ka_ b.1.1.1 (A:) TREM-1 (triggering receptor expressed on myeloid cells 1) {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: TREM-1 (triggering receptor expressed on myeloid cells 1)
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.12  E-value=7.4e-06  Score=54.00  Aligned_cols=26  Identities=19%  Similarity=0.452  Sum_probs=21.7

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ..+|+|.+++.+|+|.|.|.......
T Consensus        71 ~~~lti~~L~~eDsa~YyCa~~~~~~   96 (110)
T d1u9ka_          71 MLQVQMTDLQVTDSGLYRCVIYHPPN   96 (110)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECTTS
T ss_pred             EEEEEECccccCCCEEEEEEEeCCCC
Confidence            45899999999999999998765443

>d2bnub1 b.1.1.1 (B:2-113) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.12  E-value=1.1e-05  Score=53.53  Aligned_cols=77  Identities=14%  Similarity=0.172  Sum_probs=47.5

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe---eee----cCCce-------eeeEeeCCeeeEEEEEEeecC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD---MII----TGDDY-------EDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~---~~~----~~~~~-------~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      ++.|....+.+|++++|.|..+.. ...+.|++....   ..+    .....       ........ .....|.|.++.
T Consensus         3 tQ~P~~~~~~~G~svtl~C~~s~~-~~~~~WYrQ~~g~~p~~l~~~~~~~~~~~~~~~~~~~~~~~~-~~~~~L~I~~~~   80 (112)
T d2bnub1           3 TQTPKFQVLKTGQSMTLQCAQDMN-HEYMSWYRQDPGMGLRLIHYSVGAGITDQGEVPNGYNVSRST-TEDFPLRLLSAA   80 (112)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSC-CSEEEEEEEETTTEEEEEEEEEETTEEEECSSCTTCEECCSS-SSBCCEEESSCC
T ss_pred             EECCCeEEECCCCCEEEEEEEECC-ccceEecccccccCccceeeEeccCceecCccccceeEecCC-CCEEEEEECCCC
Confidence            445666678999999999987543 457889873211   111    00000       00111011 112489999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|+|.|.|.+..
T Consensus        81 ~~DsavYyCA~~~   93 (112)
T d2bnub1          81 PSQTSVYFCASSY   93 (112)
T ss_dssp             GGGCEEEEEEEEC
T ss_pred             HHHCEEEEEeecC
Confidence            9999999997764

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.11  E-value=1.3e-05  Score=51.79  Aligned_cols=69  Identities=12%  Similarity=0.060  Sum_probs=43.9

Q ss_pred             eecCccEEEEEEEeecCC--ceeEEecCCCeeeecCC-ceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        187 AFVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGD-DYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~-~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +..|+..+|.|.+.|+-+  ..+.|.+++.. +..+. ........++ |...+.|.+..   +|...|+|++....
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng~~-~~~~~~~~~~~~~~dgtf~~~s~l~v~~---~~~~~ytC~V~H~s   88 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNGQS-VTEGVSETSFLSKSDHSFFKISYLTFLP---SADEIYDCKVEHWG   88 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETTEE-ECTTEEECCCEECTTSCEEEEEEEEECC---CTTCCEEEEEECTT
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECCEe-ccCCcEecceEECCCCCEEEEEEEEEcC---CCCCEEEEEEEeCC
Confidence            456788999999999744  36789997443 32221 1111223333 77777777764   44558999998764

>d2ntsp1 b.1.1.1 (P:3-118) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=98.10  E-value=4.1e-06  Score=55.92  Aligned_cols=75  Identities=12%  Similarity=0.190  Sum_probs=47.8

Q ss_pred             cCCCcceeecCccEEEEEEEeecCCceeEEecCC--Cee--eec---C---------CceeeeEeeCCeeeEEEEEEeec
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEK--GDM--IIT---G---------DDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~--~~~--~~~---~---------~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      +.|....+.+|++++|.|...+. ...+.|++..  ...  +..   .         .++. ....+  .....|.|.++
T Consensus         4 Q~P~~~~~~~G~svtl~C~~~~~-~~~~~WYrQ~pg~~~~~l~~~~~~~~~~~~~~~~~~~-~~~~~--~~~~~L~I~~~   79 (113)
T d2ntsp1           4 QTPRYLIKTRGQQVTLSCSPISG-HRSVSWYQQTPGQGLQFLFEYFNETQRNKGNFPGRFS-GRQFS--NSRSEMNVSTL   79 (113)
T ss_dssp             EECSEEEEETTCCEEEEEECSTT-CCEEEEEEEETTTEEEEEEEEETTEEEEECSCCTTEE-EEECT--TSCEEEEECSC
T ss_pred             eCCCeEEECCCCCEEEEEEECCC-CCEEEEEEeecccceEeeeeeccccccccccccccee-eccCc--CCeeEEEECCC
Confidence            44566788999999999986543 4578899721  111  110   0         0111 11111  12358999999


Q ss_pred             CCCCCeEEEEEEeeC
Q psy15734        244 LSHQFGSYRCVAVNA  258 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~  258 (314)
                      +.+|+|.|.|.+...
T Consensus        80 ~~~Dsa~YyCA~~~~   94 (113)
T d2ntsp1          80 ELGDSALYLCASSLA   94 (113)
T ss_dssp             CGGGCEEEEEEEESS
T ss_pred             CcccceeeeeeeeCC
Confidence            999999999988654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=98.10  E-value=5.6e-06  Score=55.17  Aligned_cols=78  Identities=19%  Similarity=0.384  Sum_probs=51.4

Q ss_pred             cceEEEcCCcEEEEEEecCCC---ceEEEEEEcC-ceeEEEee------eeee--ecCcCEEEEeCC-ceeEEEEEeeec
Q psy15734         29 ANVTATVGKEALMACVVENLR---EYKVAWVKMI-TQTILSIH------HKVV--TQNKRVSITFND-HRSWFLHLRDVQ   95 (314)
Q Consensus        29 ~~~~v~~g~~~~l~C~~~~~~---~~~v~W~~~~-~~~~~~~~------~~~~--~~~~~~~~~~~~-~~~~~L~i~~~~   95 (314)
                      ....+.+|+++.|.|.+++..   ...+.|+|.. ++.++-..      ...+  .-.+|+.+..+. .+...|.|.+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~nt~yL~l~~l~   87 (127)
T d3cx5j1           8 GAGLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSKNQFFLKLNSVT   87 (127)
T ss_dssp             ECSEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTTTEEEEEECSCC
T ss_pred             CCceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeecccccceeecceeccc
Confidence            345578899999999998753   2578999863 22221111      0111  113466666543 334679999999


Q ss_pred             CCCCeEEEEEE
Q psy15734         96 ETDRGWYMCQI  106 (314)
Q Consensus        96 ~~d~G~Y~C~~  106 (314)
                      .+|++.|.|.-
T Consensus        88 ~eDtAvYyCAr   98 (127)
T d3cx5j1          88 TEDTATYYCAR   98 (127)
T ss_dssp             GGGCEEEEEEE
T ss_pred             cccceEEEeee
Confidence            99999999985

>d1olla2 b.1.1.4 (A:96-188) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=1e-05  Score=51.52  Aligned_cols=70  Identities=14%  Similarity=0.284  Sum_probs=46.3

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+. ..|..|++|+|.|... .+...+.|+|++.......       .....  ...+.|.++..+|+|.|+|..
T Consensus         5 PsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~Keg~~~~~~~-------~~~~~--~a~F~i~~v~~~~~G~Y~C~~   73 (93)
T d1olla2           5 PTLSVHPG-PEVISGEKVTFYCRLD-TATSMFLLLKEGRSSHVQR-------GYGKV--QAEFPLGPVTTAHRGTYRCFG   73 (93)
T ss_dssp             CEEEEESC-SEEETTCEEEEEEECS-SSCSEEEEEEESSSCEEEE-------EECSS--EEEEEEEECCGGGCEEEEEEC
T ss_pred             CEEEEeCC-CcccCCCcEEEEECCC-CCCCEEEEEECCCccceee-------cCCCc--eeEEEecccChhcCceEEEEe
Confidence            44444443 3588999999999864 3456778888644322110       11111  248999999999999999974


Q ss_pred             e
Q psy15734        256 V  256 (314)
Q Consensus       256 ~  256 (314)
                      .
T Consensus        74 ~   74 (93)
T d1olla2          74 S   74 (93)
T ss_dssp             E
T ss_pred             E
Confidence            3

>d1n4xl_ b.1.1.1 (L:) Immunoglobulin light chain kappa variable domain, VL-kappa {Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain kappa variable domain, VL-kappa
species: Mouse (Mus musculus), cluster 1.1 [TaxId: 10090]

Probab=98.09  E-value=1.4e-05  Score=53.15  Aligned_cols=22  Identities=32%  Similarity=0.597  Sum_probs=19.5

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.++..+|+|.|.|...+
T Consensus        77 ~~L~I~~~~~~DsavYyCa~~~   98 (113)
T d1n4xl_          77 FTLKISRVEAEDLGIYYCFQGS   98 (113)
T ss_dssp             EEEEESSCCGGGCEEEEEEECS
T ss_pred             ccCccCCCCcccCEEEEEEECC
Confidence            4999999999999999996554

>d1l6xa2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.09  E-value=3.8e-06  Score=54.90  Aligned_cols=71  Identities=14%  Similarity=0.172  Sum_probs=47.4

Q ss_pred             cCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        189 VSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .++.++|.|.+.|+ |. ..+.|++++.. .............++ |...+.|.|..-.....-.|+|++.+...
T Consensus        18 ~~~~~tL~Clv~gf~P~~i~v~W~~~g~~-~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~g~~ytC~V~H~~l   91 (102)
T d1l6xa2          18 TKNQVSLTCLVKGFYPSDIAVEWESNGQP-ENNYKTTPPVLDSDGSFFLYSKLTVDKSRWQQGNVFSCSVMHEAL   91 (102)
T ss_dssp             GSSEEEEEEEEEEEBSSCCEEEEEETTEE-ECCEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECCEE-CCCeEEcceEECCCCCEEEEEEEEECHHHcCCCCEEEEEEEeCCC
Confidence            46789999999995 43 37789997543 221111111222333 88889999988766666689999998653

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.08  E-value=4.7e-06  Score=53.62  Aligned_cols=75  Identities=12%  Similarity=0.112  Sum_probs=47.7

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCC
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDR   99 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~   99 (314)
                      .+|.+...|..+ |..|++|+|.|... .+...+.++|++.....      ......    ... ....+.|.+++.+|+
T Consensus         3 PkP~Lsa~Ps~~-V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~------~~~~~~----~~~-~~a~F~i~~v~~~~~   69 (96)
T d1ugna1           3 PKPTLWAEPGSV-ITQGSPVTLRCQGG-QETQEYRLYREKKTAPW------ITRIPQ----ELV-KKGQFPIPSITWEHT   69 (96)
T ss_dssp             CCCEEEEESCSE-EETTCCEEEEEECC-TTCCCEEEEESSSCCHH------HHTSCH----HHH-TTTEEEESSCCGGGC
T ss_pred             CCCEEEeECCCc-cCCCCcEEEEEeCC-CCCCEEEEEECCCCccc------EEEccC----CCC-CEEEEEEEecCHHHC
Confidence            356666666544 88999999999974 34557778885432100      000000    000 011699999999999


Q ss_pred             eEEEEEEe
Q psy15734        100 GWYMCQIN  107 (314)
Q Consensus       100 G~Y~C~~~  107 (314)
                      |.|+|...
T Consensus        70 G~Y~C~y~   77 (96)
T d1ugna1          70 GRYRCYYG   77 (96)
T ss_dssp             EEEEEEEE
T ss_pred             CeEEEEEe
Confidence            99999974

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=98.08  E-value=3.3e-06  Score=55.28  Aligned_cols=80  Identities=16%  Similarity=0.340  Sum_probs=53.8

Q ss_pred             CCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCc-ee---EEEeee---e-ee--ecCcCEEEEeCCc-eeEEEEEee
Q psy15734         27 PVANVTATVGKEALMACVVENL--REYKVAWVKMIT-QT---ILSIHH---K-VV--TQNKRVSITFNDH-RSWFLHLRD   93 (314)
Q Consensus        27 ~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~---~~~~~~---~-~~--~~~~~~~~~~~~~-~~~~L~i~~   93 (314)
                      +.....+++|+++.|.|.+++.  ....+.|+|... +.   +.....   . .+  .-.+|+.+..+.. +...|.|.+
T Consensus         6 esG~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~pGkglewv~~i~~~~~~t~y~~s~kgR~tisrD~s~~t~~L~~~s   85 (117)
T d1b2wh1           6 QSGGGVVQPGRSLKLSCLASGYIFTSSWINWVKQRPGRGLEWIGRIDPSDGEVHYNQDFKDRFTISRDKSKNTLYLQMNS   85 (117)
T ss_dssp             ECCCCEECTTSCEEEEEECCHHHHTTSEECEEEECTTSCCEEEEEECTTTCCEEECHHHHTTEEEECCTTTTEEEEEECS
T ss_pred             eECCceECCCCCEEEEEEECCCCCcCCccccccCCCCCceeeeeccCCccccccccccceeeEEEEeccccceEEeeecc
Confidence            3445568899999999999863  456889998632 11   111100   0 01  1135888887644 346799999


Q ss_pred             ecCCCCeEEEEEE
Q psy15734         94 VQETDRGWYMCQI  106 (314)
Q Consensus        94 ~~~~d~G~Y~C~~  106 (314)
                      ++.+|++.|+|.-
T Consensus        86 L~~eDTAvYYCAr   98 (117)
T d1b2wh1          86 LRPEDTAVYYCAR   98 (117)
T ss_dssp             CCGGGCEEEECCE
T ss_pred             ccCCcceEEEEcc
Confidence            9999999999964

>d1lgva1 b.1.1.1 (A:1-112) Immunoglobulin light chain lambda variable domain, VL-lambda {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin light chain lambda variable domain, VL-lambda
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.06  E-value=1.7e-05  Score=52.62  Aligned_cols=25  Identities=16%  Similarity=0.357  Sum_probs=21.3

Q ss_pred             EEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        235 HMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       235 ~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ...|.|.+++.+|+|.|.|.+.+..
T Consensus        72 ~~~L~I~~l~~~Dsa~YyCa~~~~~   96 (112)
T d1lgva1          72 SASLTISGLQAEDEADYYCSSYDGS   96 (112)
T ss_dssp             EEEEEECSCCGGGCEEEEEEEECSS
T ss_pred             EeeEEeCcCccccCEEEEEeeecCC
Confidence            3589999999999999999876543

>d1ymmd1 b.1.1.1 (D:9-104) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=98.06  E-value=4.1e-07  Score=58.84  Aligned_cols=74  Identities=12%  Similarity=0.165  Sum_probs=47.3

Q ss_pred             ceeecCccEEEEEEEeecCCceeEEecCCC-e--e-ee---------cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEE
Q psy15734        185 EGAFVSQTVELHCHTEAFPASLNYWTNEKG-D--M-II---------TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSY  251 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~-~--~-~~---------~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y  251 (314)
                      ..|.+|++++|.|..+.. ...+.|++... .  . +.         ...++........  ....|.|.+++.+|+|.|
T Consensus         3 lsV~eG~~vtL~C~~~~~-~~~i~WYrQ~~g~~~~~l~~~~~~~~~~~~~r~~~~~~~~~--~~~~L~I~~~~~~Dsa~Y   79 (96)
T d1ymmd1           3 LSIQEGENATMNCSYKTS-INNLQWYRQNSGRGLVHLILIRSNEREKHSGRLRVTLDTSK--KSSSLLITASRAADTASY   79 (96)
T ss_dssp             CCCSSCCCCCBCCBCSSC-EEEEEEECCCSSCCCCCCCEEESSSCCCCSSSCCBCCBGGG--TBCCBCCSSCCSTTCSCC
T ss_pred             ceECCCCCEEEEEEEeCC-cccEEEEEECCCCCccccccccceecccccccceeeccCcc--eecccCcCCCCcccCEEE
Confidence            468899999999987643 45788997321 1  0 10         1122222211111  134799999999999999


Q ss_pred             EEEEeeCCCC
Q psy15734        252 RCVAVNALGE  261 (314)
Q Consensus       252 ~C~a~n~~g~  261 (314)
                      .|.+....|.
T Consensus        80 yCA~~~~~g~   89 (96)
T d1ymmd1          80 FCATDTTSGT   89 (96)
T ss_dssp             EEEEEETTSC
T ss_pred             eEeEecCCCC
Confidence            9988765553

>d1cqka_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.05  E-value=3.9e-06  Score=54.68  Aligned_cols=70  Identities=13%  Similarity=0.151  Sum_probs=47.0

Q ss_pred             cCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCcee-eeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDDYE-DSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~~~-~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      ..+.+.|.|.+.|+ |. ..+.|.+++.. ........ ....++.|...+.|.|..-.......|+|++....
T Consensus        17 ~~~~~tL~C~v~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~dgtys~~S~L~v~~~~w~~~~~ytC~V~H~~   89 (101)
T d1cqka_          17 AKDLVSLTCMITDFFPEDITVEWQWNGQP-AENYKNTQPIMDTDGSYFVYSKLNVQKSNWEAGNTFTCSVLHEG   89 (101)
T ss_dssp             TSSEEEEEEEEEEEBSSCCEEEEEETTEE-CCSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTT
T ss_pred             CCCcEEEEEEEEEeECCCcEEEEEECCEE-ccCcEEeeeecCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECC
Confidence            45678999999995 53 47789997443 22211111 22223348889999998777666778999998864

>d1nfdb1 b.1.1.1 (B:1-117) T-cell antigen receptor {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=98.03  E-value=5.2e-06  Score=55.32  Aligned_cols=77  Identities=10%  Similarity=0.119  Sum_probs=49.4

Q ss_pred             EEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eee--c----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        178 LTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MII--T----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       178 ~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~--~----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +.+.|....+.+|++++|.|..+.. ...+.|++....    .+.  .          ..++..... .  .....|.|.
T Consensus         4 VtQ~P~~~~~~~G~~v~l~C~~~~~-~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~-~--~~~~~L~I~   79 (113)
T d1nfdb1           4 VVQSPRHIIKEKGGRSVLTCIPISG-HSNVVWYQQTLGKELKFLIQHYEKVERDKGFLPSRFSVQQF-D--DYHSEMNMS   79 (113)
T ss_dssp             CEEECSEEEEETTCCCEEEEECCTT-CCEEEEEEBCSSCCCEEEEEEETTTEEEESSCCTTCCCEEC-T--TSCEEEECC
T ss_pred             EEEcCCEEEEeCCCCEEEEEEeCCC-CCEEEEEEECCcCCCcceeeeeecccccCCCcccceeeEcC-C--CCeEEEEec
Confidence            4456677788999999999986543 457889974321    110  0          011111111 1  123589999


Q ss_pred             ecCCCCCeEEEEEEeeC
Q psy15734        242 SILSHQFGSYRCVAVNA  258 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n~  258 (314)
                      +++.+|+|.|.|.+...
T Consensus        80 ~~~~~Dsa~YyCa~~~~   96 (113)
T d1nfdb1          80 ALELEDSAMYFCASSLR   96 (113)
T ss_dssp             SCCGGGCEEECEEEESS
T ss_pred             ccCcCCceeEEEEeecC
Confidence            99999999999987643

>d1i1ca2 b.1.1.2 (A:342-443) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.01  E-value=5.4e-06  Score=54.12  Aligned_cols=70  Identities=11%  Similarity=0.164  Sum_probs=46.9

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ...+.|.|.+.|+.+.  .+.|.+++.. .............+ .|...+.|.|..........|+|.|.....
T Consensus        19 ~~~~~L~C~v~~f~P~~i~v~W~~~g~~-~~~~~~~~~~~~~dgt~s~~S~L~v~~~~w~~~~~ytC~V~H~~~   91 (102)
T d1i1ca2          19 QSQVSITCMVKGFYPPDIYTEWKMNGQP-QENYKNTPPTMDTDGSYFLYSKLNVKKETWQQGNTFTCSVLHEGL   91 (102)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEE-CSSEEECCCEECTTSCEEEEEEEEEEHHHHHTTCCEEEEEECTTS
T ss_pred             CCeEEEEEEEEEEECCCCEEEEEECCee-ccCcEEcccEeCCCCCEEEEEEEEECHHHhCCCCEEEEEEEeCCC
Confidence            5678999999986543  6789997543 22111111122333 378888999988777666789999988643

>d1uvqb1 b.1.1.2 (B:95-191) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=98.01  E-value=1.5e-05  Score=51.28  Aligned_cols=71  Identities=11%  Similarity=0.090  Sum_probs=40.6

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..|+..+|.|.+.|+.+.  .+.|.+++................++ |...+.|.+   ..++...|+|++....-.
T Consensus        14 ~~~~~~tL~C~~~gF~P~~i~v~W~~ng~~~~~~~~~~~~~~~~dgty~~~s~l~v---~~~~~~~ytC~V~H~sl~   87 (97)
T d1uvqb1          14 ALNHHNLLVCSVTDFYPGQIKVRWFRNDQEETAGVVSTPLIRNGDWTFQILVMLEM---TPQRGDVYTCHVEHPSLQ   87 (97)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEEECTTEEECCCEECSSSCEEEEEEEEC---CSCTTCCEEEEEECTTCS
T ss_pred             cCCCCEEEEEEEeeeECCCeEEEEEECCEEcCCCcEeceeecCCCceEEEEEEecc---CCCCCCEEEEEEEeCCCC
Confidence            456778999999996554  66899975332211111111223333 666667766   455667899999886543

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=98.01  E-value=1.5e-05  Score=53.44  Aligned_cols=79  Identities=15%  Similarity=0.370  Sum_probs=53.8

Q ss_pred             CcceEEEcCCcEEEEEEecCCC--ceEEEEEEcCc-eeEEEeee--------ee---eecCcCEEEEeCCc-eeEEEEEe
Q psy15734         28 VANVTATVGKEALMACVVENLR--EYKVAWVKMIT-QTILSIHH--------KV---VTQNKRVSITFNDH-RSWFLHLR   92 (314)
Q Consensus        28 ~~~~~v~~g~~~~l~C~~~~~~--~~~v~W~~~~~-~~~~~~~~--------~~---~~~~~~~~~~~~~~-~~~~L~i~   92 (314)
                      .....+++|++++|.|.+++..  ...+.|+|... +.++-...        ..   ..-.+|+.+..+.. +...|.|.
T Consensus         7 sG~~~vkpg~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglewv~~i~~~~~~~~~~ya~s~kgR~tiS~D~s~nt~~Lq~~   86 (131)
T d3c2ah1           7 SGGGLVKPGGSLRLTCVASGFTFSDVWLNWVRQAPGKGLEWVGRIKSRTDGGTTDYAASVKGRFTISRDDSKNTLYLQMN   86 (131)
T ss_dssp             ECCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTCCEEECTTTTTTEEEEEEGGGTEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEECCCCCcCCcccccccCCCccceecccccccccccchhhccceeEEEEEecccccceeeccee
Confidence            3445688999999999998753  46889998642 22211100        00   11245888877643 34679999


Q ss_pred             eecCCCCeEEEEEE
Q psy15734         93 DVQETDRGWYMCQI  106 (314)
Q Consensus        93 ~~~~~d~G~Y~C~~  106 (314)
                      +++.+|++.|.|..
T Consensus        87 ~L~~eDTAvYYCAR  100 (131)
T d3c2ah1          87 SLKTEDTAVYSCTT  100 (131)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccccCCceEEEEec
Confidence            99999999999985

>d1nkra2 b.1.1.4 (A:102-200) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=98.01  E-value=2.3e-05  Score=50.56  Aligned_cols=74  Identities=15%  Similarity=0.170  Sum_probs=45.3

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+. ..|..|++|+|.|... .+...+.|+|++........   ......   ....+.|..+...|+|+|+|..
T Consensus         7 PsLsa~P~-~~V~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~---~~~~~~---~~~~f~~~~~~~~~~G~Y~C~y   78 (99)
T d1nkra2           7 PSLSAQPG-PTVLAGENVTLSCSSR-SSYDMYHLSREGEAHERRLP---AGPKVN---GTFQADFPLGPATHGGTYRCFG   78 (99)
T ss_dssp             CEEEEESC-SEECTTCEEEEEEEES-SCCSEEEEEETTCSSCEEEE---CEEEET---TEEEEEEEEEECCSCEEEEEEE
T ss_pred             CEEEEeCC-CcccCCCeEEEEECCC-CCccEEEEEECCCccccEEE---ccccCC---ccEEEEEeccccccCEEEEEEe
Confidence            44444443 3678999999999864 34567788887532211110   011111   1236677888888999999976


Q ss_pred             ee
Q psy15734        256 VN  257 (314)
Q Consensus       256 ~n  257 (314)
                      ..
T Consensus        79 ~~   80 (99)
T d1nkra2          79 SF   80 (99)
T ss_dssp             EE
T ss_pred             ec
Confidence            54

>d1ow0a2 b.1.1.2 (A:343-450) Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 3, CH3-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=98.01  E-value=5.7e-06  Score=54.66  Aligned_cols=84  Identities=15%  Similarity=0.281  Sum_probs=54.2

Q ss_pred             CCeEEc-CCCcceeecCccEEEEEEEeec-CCc-eeEEecCCCeeeecCCceee------eEeeCCeeeEEEEEEeecCC
Q psy15734        175 PPMLTI-PNQLEGAFVSQTVELHCHTEAF-PAS-LNYWTNEKGDMIITGDDYED------SRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       175 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~-p~p-~~~W~~~~~~~~~~~~~~~~------~~~~~~~~~~s~L~i~~~~~  245 (314)
                      +|.+.+ ++....+..++.++|.|.+.|+ |.. .|.|++++.. +........      ...++.|...+.|.|..-..
T Consensus         4 ~P~V~~~~p~~~e~~~~~~~tl~C~~~~f~P~~i~v~W~~~g~~-~~~~~~~t~~~~~~~~~~~gtys~~S~L~v~~~~w   82 (108)
T d1ow0a2           4 RPEVHLLPPPSEELALNELVTLTCLARGFSPKDVLVRWLQGSQE-LPREKYLTWASRQEPSQGTTTFAVTSILRVAAEDW   82 (108)
T ss_dssp             CCEEEEECCCTTTTTSSSEEEEEEEEEEESSSCCEEEEEETTEE-CCGGGSEECCCEECSCSSSCCEEEEEEEEEEHHHH
T ss_pred             CCEEEEECCCHHHhccCCceEEEEEEEEeECCCEEEEEEECCeE-cCCCceEcccceecccCCCCcEEEEEEEEEcHHHh
Confidence            344432 3444456778999999999995 433 7889986433 322211111      01133377888999987776


Q ss_pred             CCCeEEEEEEeeCC
Q psy15734        246 HQFGSYRCVAVNAL  259 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~  259 (314)
                      .....|+|+|.+..
T Consensus        83 ~~g~~ytC~V~H~s   96 (108)
T d1ow0a2          83 KKGDTFSCMVGHEA   96 (108)
T ss_dssp             HHTCCEEEEEECTT
T ss_pred             CCCCEEEEEEEeCC
Confidence            66779999998865

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=98.00  E-value=2.7e-05  Score=49.38  Aligned_cols=66  Identities=12%  Similarity=0.124  Sum_probs=43.5

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +..++|.|.+.|+-+.  .+.|++++ ... ...........++ |...+.|.|..   +|...|+|++....-
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng-~~~-~~~~~~~~~~~dgty~~~S~l~v~~---~~~~~ytC~V~H~sL   83 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNG-LAS-GSGNCSTGPNGDGSFHAWSLLEVKR---GDEHHYQCQVEHEGL   83 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETT-EEC-CCCEEEEEECSSSCEEEEEEEEEET---TCGGGEEEEEECTTS
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECC-EeC-CccCccceecCCCCEeEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            4578999999996443  67899975 333 2333333333443 77788888764   445689999988643

>d1dqta_ b.1.1.1 (A:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=98.00  E-value=2.4e-05  Score=52.40  Aligned_cols=22  Identities=23%  Similarity=0.389  Sum_probs=19.9

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|+|.|.|.+..
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~   96 (117)
T d1dqta_          75 VNLTIQGLRAVDTGLYLCKVEL   96 (117)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEE
T ss_pred             EEEEhhcCccccCEeEEEEEec
Confidence            4899999999999999998764

>d1i1ca1 b.1.1.2 (A:239-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.99  E-value=6.3e-06  Score=53.89  Aligned_cols=80  Identities=10%  Similarity=0.067  Sum_probs=50.8

Q ss_pred             EcCCCcce-eecCccEEEEEEEeec-CC---ceeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEE
Q psy15734        179 TIPNQLEG-AFVSQTVELHCHTEAF-PA---SLNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYR  252 (314)
Q Consensus       179 ~~~~~~~~-v~~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~  252 (314)
                      .++|.... ...+.+++|.|.+.++ |.   ..+.|.+++..... ..........++ |...|.|.|..-.....-.|+
T Consensus         4 l~pPs~~~~~~~~~t~~l~Clv~~f~p~~~~v~v~W~~~g~~~~~-~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~~t   82 (103)
T d1i1ca1           4 IFPPKTKDVLGGGLTPKVTCVVVDISQNDPEVRFSWFIDDVEVHT-AQTHAPEKQSNSTLRSVSELPIVERDWLNGKTFK   82 (103)
T ss_dssp             EECCCHHHHTTSSSCCEEEEEEEEECTTCCCCEEEEEESSCEECC-CEECCCEECTTSCEEEEEEEECCHHHHHTTCCEE
T ss_pred             EECcChHHHhccCCCcEEEEEEEeeECCCCCEEEEEEECCccccC-CEECCcEECCCCCEEEEEEEEECHHHhcCCCEEE
Confidence            34554433 4467789999999985 43   36789997654332 211112223333 777888888776665666799


Q ss_pred             EEEeeCC
Q psy15734        253 CVAVNAL  259 (314)
Q Consensus       253 C~a~n~~  259 (314)
                      |+|.+..
T Consensus        83 C~V~H~~   89 (103)
T d1i1ca1          83 CKVNSGA   89 (103)
T ss_dssp             EEEECSS
T ss_pred             EEEEeCC
Confidence            9999865

>d2cdeb1 b.1.1.1 (B:5-116) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.99  E-value=4.4e-06  Score=55.67  Aligned_cols=81  Identities=15%  Similarity=0.244  Sum_probs=49.2

Q ss_pred             EcCCCcceeecCccEEEEEEEeecCCceeEEecCCCe----eee--c-CCce------eeeEeeCCeeeEEEEEEeecCC
Q psy15734        179 TIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGD----MII--T-GDDY------EDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       179 ~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~----~~~--~-~~~~------~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      .+.|....+.+|++++|.|..+. ....+.|++....    .+.  . ....      ..............|.|.+++.
T Consensus         2 ~QsP~~~~~~~G~svtL~C~~~~-~~~~~~WYrQ~~g~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~   80 (112)
T d2cdeb1           2 YQTPRYLVIGTGKKITLECSQTM-GHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLSSESTVSRIRTEHFPLTLESARP   80 (112)
T ss_dssp             EEECSEEEEETTCCBCCEEEETT-CCSEEEEEEECTTSCCEEEEEESSTTCCEESSSCCCCEECCSSSSBCCEEBSSCCT
T ss_pred             EECCCEEEECCCCCEEEEEEEeC-CcccEEEEEEcCCCCcEEeeeeeccCccccccccccceeecCCCCceEeeeccccc
Confidence            34566678899999999998753 3457889874321    111  0 0000      0000000011234799999999


Q ss_pred             CCCeEEEEEEeeCCC
Q psy15734        246 HQFGSYRCVAVNALG  260 (314)
Q Consensus       246 ~d~G~Y~C~a~n~~g  260 (314)
                      +|+|.|.|.+....+
T Consensus        81 ~Dsa~YyCA~~~~~~   95 (112)
T d2cdeb1          81 SHTSQYLCASSENIG   95 (112)
T ss_dssp             TTCSEEEEEEECSSS
T ss_pred             cccccEEEEEecCCC
Confidence            999999998876543

>d1hdma1 b.1.1.2 (A:94-196) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.99  E-value=2.8e-05  Score=50.45  Aligned_cols=70  Identities=9%  Similarity=0.078  Sum_probs=46.4

Q ss_pred             eecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      +..|+..+|.|.+.|+-+.  .+.|.+++. ..............++ |...+.|.|..   +|...|+|++....-
T Consensus        15 ~e~~~~~tL~C~v~gF~P~~i~V~W~~ng~-~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~~l   87 (103)
T d1hdma1          15 LEFGKPNTLVCFVSNLFPPMLTVNWHDHSV-PVEGFGPTFVSAVDGLSFQAFSYLNFTP---EPSDIFSCIVTHEPD   87 (103)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCEEEEEEETTE-ECSSCCCEEEEEETTTEEEEEEEEEECC---CTTCCEEEEEEETTT
T ss_pred             hhcCCCeEEEEEEeeEECCCCEEEEEECCe-ecCCcEeceEEeCCCCcEEEEEEEEEec---CCCCEEEEEEEeCCC
Confidence            4568888999999996554  667999744 3322222223333344 88888887764   344579999998743

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.98  E-value=2.5e-05  Score=49.34  Aligned_cols=67  Identities=15%  Similarity=0.225  Sum_probs=42.7

Q ss_pred             cCccEEEEEEEeecCCc--eeEEecCCCeeeecCCce-eeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDY-EDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~-~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+..++|.|.+.|+.+.  .+.|.+++ ......... ......++ |...+.|.|..-   +...|+|++....
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~~gt~~~~s~l~v~~~---~~~~ytC~V~H~~   84 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNG-EELIQDMELVETRPAGDGTFQKWASVVVPLG---KEQYYTCHVYHQG   84 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETT-EEECTTCEECCCEECSSSCEEEEEEEEEESS---TTTTCEEEEECSS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECC-EEeCCCEEECcEecCCCCcEEEEEEEEecCc---CCCEEEEEEEECC
Confidence            45689999999997654  55899974 433322221 12223333 777788888653   3336999998753

>d1ugna1 b.1.1.4 (A:2-97) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.97  E-value=8.9e-06  Score=52.26  Aligned_cols=74  Identities=19%  Similarity=0.111  Sum_probs=46.1

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+. ..|..|++|+|.|... .+...+.+++++........... .....     ..+.|.++..+|+|.|+|..
T Consensus         5 P~Lsa~Ps-~~V~~G~~VTL~C~~~-~~~~~f~L~keg~~~~~~~~~~~-~~~~~-----a~F~i~~v~~~~~G~Y~C~y   76 (96)
T d1ugna1           5 PTLWAEPG-SVITQGSPVTLRCQGG-QETQEYRLYREKKTAPWITRIPQ-ELVKK-----GQFPIPSITWEHTGRYRCYY   76 (96)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECC-TTCCCEEEEESSSCCHHHHTSCH-HHHTT-----TEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeECC-CccCCCCcEEEEEeCC-CCCCEEEEEECCCCcccEEEccC-CCCCE-----EEEEEEecCHHHCCeEEEEE
Confidence            44444444 3478999999999964 44556777776432111100000 00111     28999999999999999987


Q ss_pred             ee
Q psy15734        256 VN  257 (314)
Q Consensus       256 ~n  257 (314)
                      ..
T Consensus        77 ~~   78 (96)
T d1ugna1          77 GS   78 (96)
T ss_dssp             EE
T ss_pred             eC
Confidence            54

>d1kcvh2 b.1.1.2 (H:117-217) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.97  E-value=1.5e-05  Score=51.78  Aligned_cols=71  Identities=11%  Similarity=0.047  Sum_probs=46.5

Q ss_pred             ecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        188 FVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..+..++|.|.+.|+.+  ..|.|..++....  ...+.....++.|...+.|.|..-... .|.|+|.+.+....
T Consensus        18 ~~~~~~tl~Cl~~gf~P~~i~v~W~~~~~~~~--~~~~~~~~~~g~~s~~S~L~v~~~~w~-~~~ytC~V~H~~~~   90 (101)
T d1kcvh2          18 AAASAVTLGCLVKGYFPEPVTVAWNEGALSSG--VLTVSAVLQSGLYTLSSNTTVASGTWP-SASVTCLVAHPKSS   90 (101)
T ss_dssp             TTCSEEEEEEEEEEEBSSCCEEEEGGGTCCTT--EEECCCEEETTEEEEEEEEEEETTTTT-TSCCEEEEEEGGGT
T ss_pred             cCCCeEEEEEEEEEEeCCCCEEEEecCCCccc--ceeeeeecCCCCEEEEEEEEEchhhcC-CCeEEEEEEeCCCC
Confidence            35789999999999543  4778987643211  111111223344888889999877664 57899999987543

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.97  E-value=2.5e-06  Score=56.04  Aligned_cols=77  Identities=19%  Similarity=0.395  Sum_probs=50.5

Q ss_pred             eEEEcCCcEEEEEEecCC--CceEEEEEEcCc-eeEE---Eeeee---ee--ecCcCEEEEeCCc-eeEEEEEeeecCCC
Q psy15734         31 VTATVGKEALMACVVENL--REYKVAWVKMIT-QTIL---SIHHK---VV--TQNKRVSITFNDH-RSWFLHLRDVQETD   98 (314)
Q Consensus        31 ~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~-~~~~---~~~~~---~~--~~~~~~~~~~~~~-~~~~L~i~~~~~~d   98 (314)
                      ..+++|+++.|.|++++.  ....+.|+|... +.++   .....   .+  .-.+|+.+..+.. +...|.+.+++.+|
T Consensus        10 ~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwv~~i~~~g~t~y~~~~kgR~tis~D~s~~tv~L~~~~L~~eD   89 (116)
T d1fn4b1          10 GLVRPSETLSLTCTVSGFSLTSFSVSWVRHPSGKGPEWMGRMWYDGYTAYNSALKSRLSISRDTSKNQVFLKMNSLQTDD   89 (116)
T ss_dssp             SBCCTTSEECCEEECCSSCTTSSEEEEEEEETTSCCEEEEEECSSSCEEECHHHHTTBCCEEEGGGTEEECCEESCCCCC
T ss_pred             ceECCCCCeEEEEEEeCcccccCccceeeECCCCceeeeeeccccccccccccccceEEEccccccchhhcceeccCCCC
Confidence            346789999999999874  456899998631 1111   11100   00  0125777766543 34579999999999


Q ss_pred             CeEEEEEEe
Q psy15734         99 RGWYMCQIN  107 (314)
Q Consensus        99 ~G~Y~C~~~  107 (314)
                      ++.|.|...
T Consensus        90 TAvYyCAr~   98 (116)
T d1fn4b1          90 TGTYYCTRD   98 (116)
T ss_dssp             CEEEEEEEE
T ss_pred             CEEEEEEee
Confidence            999999753

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.96  E-value=7.5e-05  Score=47.61  Aligned_cols=69  Identities=14%  Similarity=0.176  Sum_probs=42.3

Q ss_pred             cCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      .|+.++|.|.+.|+.+.  .+.|.+++. ..............++ |...+.|.+   ...|...|+|++....-.
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng~-~~~~~~~~~~~~~~~~t~~~~s~l~~---~~~~~~~ytC~V~H~sl~   85 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAGE-VQEPELRGDVLHNGNGTYQSWVVVAV---PPQDTAPYSCHVQHSSLA   85 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETTE-ECCCSEEEEEEETTTTEEEEEEEEEE---CTTCCSCEEEEEEETTCS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECCE-ECCCcEEeeeecCCCCeEEEEEEeEe---CCCCCCEEEEEEEECCCC
Confidence            47899999999996443  668999743 3322222222222233 555555555   345556899999886543

>d2agjh1 b.1.1.1 (H:1-120) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.96  E-value=2.4e-05  Score=51.85  Aligned_cols=72  Identities=13%  Similarity=0.168  Sum_probs=45.2

Q ss_pred             cceeecCccEEEEEEEeecC----CceeEEecCCC-e--e-ee---c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        184 LEGAFVSQTVELHCHTEAFP----ASLNYWTNEKG-D--M-II---T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p----~p~~~W~~~~~-~--~-~~---~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ...+++|+++.|.|.+.|..    ...+.|++... +  . +.   .          ..++.++.....  ....|.|.+
T Consensus         9 ~~~v~PG~sv~LsC~~SG~s~ss~~~~~~WyRQ~Pg~~le~l~~i~~~~~~~~~~~~~gRft~s~d~s~--~~~~L~i~~   86 (120)
T d2agjh1           9 PTLVKPTQTLTLTCTFSGFSLTTTGEGVGWIRQPPGKALEFLAFIYWNDAKRYNPSLQSRLTITKDASK--KQVVLTLTN   86 (120)
T ss_dssp             CSBCCSSSEEEEEEEEESCCTTSSSCEEEEEEECTTSCCEEEEEEEGGGCEEECGGGCSSEEEECCTTT--TEEEEEEES
T ss_pred             CeeECCCCCEEEEEEEcccCccCCCCeEeeccccccccceeeecccCCcccccchhhccccceeccccc--ceeeeeEEe
Confidence            34578999999999998753    23567986321 1  0 11   0          122222221111  235899999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|++.|.|....
T Consensus        87 l~~eDsAvYyCAr~~  101 (120)
T d2agjh1          87 LDPVDTATYYCARTS  101 (120)
T ss_dssp             CCGGGCEEEEEEEEC
T ss_pred             eeeccceEEeeEecC
Confidence            999999999996543

>d2h26a1 b.1.1.2 (A:184-279) CD1, alpha-3 domain {Human (Homo sapiens), CD1a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: CD1, alpha-3 domain
species: Human (Homo sapiens), CD1a [TaxId: 9606]

Probab=97.96  E-value=8.9e-06  Score=52.25  Aligned_cols=67  Identities=13%  Similarity=0.154  Sum_probs=42.7

Q ss_pred             cCccEEEEEEEeecCC-c-eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAFPA-S-LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~-p-~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+..++|.|.+.|+.+ . .+.|++++ ...............++ |...+.|.|..   +|...|+|++.+..
T Consensus        15 ~~~~vtL~C~a~gF~P~~i~v~W~~~~-~~~~~~~~~~~~~~~dgty~~~S~L~v~~---~~~~~ytC~V~H~s   84 (96)
T d2h26a1          15 GPGRLQLVCHVSGFYPKPVWVMWMRGE-QEQQGTQLGDILPNANWTWYLRATLDVAD---GEAAGLSCRVKHSS   84 (96)
T ss_dssp             STTEEEEEEEEEEEBSSCEEEEEEETT-EECTTCEECCCEECTTSCEEEEEEEEEEG---GGCTTEEEEEEEGG
T ss_pred             CCCeEEEEEEEEEEECCCcEEEEEECc-ccCCCceeCccEeCCCCcEEEEEEEEEeC---ccCCEEEEEEEeCC
Confidence            3458999999999544 3 67899964 33322211112233333 77788888875   34557999998854

>d1igtb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus), gamma2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus), gamma2 [TaxId: 10090]

Probab=97.95  E-value=1.3e-05  Score=53.77  Aligned_cols=74  Identities=9%  Similarity=0.034  Sum_probs=49.4

Q ss_pred             eecCccEEEEEEEeec-CC---ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        187 AFVSQTVELHCHTEAF-PA---SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       187 v~~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ...+..+.|.|.+.|+ |.   ..+.|+.++...............++.|...+.|.|..-.......|+|+|.+..-
T Consensus        29 ~~~~~~~~L~C~v~gf~P~~~~v~v~W~~~g~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~eW~~g~~ytC~V~H~~l  106 (119)
T d1igtb3          29 LMISLSPIVTCVVVDVSEDDPDVQISWFVNNVEVHTAQTQTHREDYNSTLRVVSALPIQHQDWMSGKEFKCKVNNKDL  106 (119)
T ss_dssp             HCTTSCCEEEEEEEEECTTCCCCEEEEEETTEECSSTTCBCCEEECSSSEEEEEEEECCHHHHHTTCEEEEEEECTTC
T ss_pred             cccCCceEEEEEeecccCCCCcEEEEEeeCCcccCCCEECccEECCCCcEEEEEEEEEeHHHhCCCCeEEEEEEECCC
Confidence            4568899999999995 42   36779997544332222222222333488888998877766666789999998653

>d1nkra1 b.1.1.4 (A:6-101) Killer cell inhibitory receptor {Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Killer cell inhibitory receptor
species: Human (Homo sapiens), p58-cl42 kir [TaxId: 9606]

Probab=97.93  E-value=3.1e-05  Score=49.60  Aligned_cols=77  Identities=17%  Similarity=0.102  Sum_probs=47.2

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+ ...|..|++|+|.|... .....+.++|++........   ....... .....+.|.++..+|+|+|+|.-
T Consensus         3 PsLsa~P-~~~V~~G~~VTl~C~~~-~~~~~f~L~keg~~~~~~~~---~~~~~~~-~~~a~F~l~~v~~~~~G~Y~C~y   76 (96)
T d1nkra1           3 PSLLAHP-GPLVKSEETVILQCWSD-VMFEHFLLHREGMFNDTLRL---IGEHHDG-VSKANFSISRMTQDLAGTYRCYG   76 (96)
T ss_dssp             CEEEEES-CSEEETTCCEEEEEEES-SCCSEEEEEEESSSCEEEEE---ECEEETT-EEEEEEEESSCCGGGCEEEEEEE
T ss_pred             CEEEeeC-CCccCCCCcEEEEECCC-CCCCEEEEEECCCcCCceee---eeeecCC-ceEEEEEEcccCcccCeEEEEEE
Confidence            4444444 34688999999999965 33456777776432211100   0001111 11248999999999999999987


Q ss_pred             eeC
Q psy15734        256 VNA  258 (314)
Q Consensus       256 ~n~  258 (314)
                      ...
T Consensus        77 ~~~   79 (96)
T d1nkra1          77 SVT   79 (96)
T ss_dssp             EBT
T ss_pred             EcC
Confidence            543

>d1mjul2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.92  E-value=1.7e-05  Score=52.09  Aligned_cols=73  Identities=19%  Similarity=0.218  Sum_probs=47.8

Q ss_pred             cCccEEEEEEEeecCC--ceeEEecCCCeeeecCCcee--eeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        189 VSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYE--DSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~--~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      .+..++|.|.+.|+-+  ..|.|.+++ ..........  .....+ .|...+.|.|..-.......|+|++.......
T Consensus        19 ~~~~~tL~Cl~~~f~P~~i~v~W~~ng-~~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~g~~ytC~V~H~~~~~   96 (107)
T d1mjul2          19 TSGGASVVCFLNNFYPKDINVKWKIDG-SERQNGVLNSWTDQDSKDSTYSMSSTLTLTKDEYERHNSYTCEATHKTSTS   96 (107)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETT-EEECTTEEEEECCCCTTTCCEEEEEEEEEEHHHHHTCCEEEEEEECTTCSS
T ss_pred             cCCceEEEEEEEEeECCCCEEEEEECC-EEccCCeEeccccEecCCCCEEEEEEEEECHHHhCCCCEEEEEEEECCCCC
Confidence            3667999999998543  377899864 3332221111  111223 38888899998877666678999999865443

>d1kxvc_ b.1.1.1 (C:) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.92  E-value=3.2e-05  Score=50.91  Aligned_cols=72  Identities=13%  Similarity=0.129  Sum_probs=46.6

Q ss_pred             ceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e-e--ec-----------CCceeeeEeeCCeeeEEEEEEeecCC
Q psy15734        185 EGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M-I--IT-----------GDDYEDSRLINGYSCHMTLKIRSILS  245 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~-~--~~-----------~~~~~~~~~~~~~~~~s~L~i~~~~~  245 (314)
                      ..+++|+++.|.|.++|..-  -.+.|++... +  . +  ..           ..++.++.+...  ....|.|.+++.
T Consensus         9 ~~vkPg~sl~LsC~~SG~~~s~y~~~W~RQ~pGkglewl~~i~~~g~~~y~~~~kgR~tiS~D~s~--~~~~L~i~~L~~   86 (119)
T d1kxvc_           9 GTVPAGGSLRLSCAASGNTLCTYDMSWYRRAPGKGRDFVSGIDNDGTTTYVDSVAGRFTISQGNAK--NTAYLQMDSLKP   86 (119)
T ss_dssp             EEECTTCCEEEEEEEESCTTCCEEEEEEEECTTSCEEEEEEECTTCCEEECGGGBTTEEEEECSST--TEEEEEECSCCG
T ss_pred             ceECCCCCeEEEEEEcCCCccCCceeeeeeCCCCcceeeeecccccchhhhhhhhcceEEecccCC--cceecccccCCc
Confidence            45789999999999998654  3456876321 0  0 0  00           123333332222  234899999999


Q ss_pred             CCCeEEEEEEeeC
Q psy15734        246 HQFGSYRCVAVNA  258 (314)
Q Consensus       246 ~d~G~Y~C~a~n~  258 (314)
                      +|++.|.|.....
T Consensus        87 eDtA~YYCAr~~~   99 (119)
T d1kxvc_          87 DDTAMYYCKPSLR   99 (119)
T ss_dssp             GGCEEEEEEEEES
T ss_pred             CCcceEeeeeccc
Confidence            9999999976544

>d1l6xa1 b.1.1.2 (A:237-341) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=9.3e-06  Score=53.30  Aligned_cols=75  Identities=15%  Similarity=0.142  Sum_probs=49.1

Q ss_pred             eeecCccEEEEEEEeec-CC---ceeEEecCCCeeeecCCceeeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        186 GAFVSQTVELHCHTEAF-PA---SLNYWTNEKGDMIITGDDYEDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       186 ~v~~g~~~~l~C~~~g~-p~---p~~~W~~~~~~~~~~~~~~~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ....++.++|.|.+.|+ |.   ..+.|.+++.. .............+ .|...+.|.|..-.....-.|+|++.+...
T Consensus        14 ~~~~~~~~~L~C~~~gf~P~~~~v~~~W~~~~~~-~~~~~~~~~~~~~~gtys~~S~L~v~~~~W~~g~~ytC~V~H~~l   92 (105)
T d1l6xa1          14 TLMISRTPEVTCVVVDVSHEDPEVKFNWYVDGVE-VHNAKTKPREEQYNSTYRVVSVLTVLHQDWLNGKEYKCKVSNKAL   92 (105)
T ss_dssp             HHCTTSCCEEEEEEEEECSSSCCCEEEEEETTEE-ECCCEECCCEECTTSCEEEEEEEECCHHHHHTTCCEEEEEECTTS
T ss_pred             hhccCCceEEEEEEEEEeCCCCeEEEEEeeCCeE-CCCcEECCcEECCCCcEEEEEEEEEcHHHcCCCCEEEEEEEeCCC
Confidence            45678899999999985 43   35568886443 32222111222233 377888888877766666689999998654


Q ss_pred             C
Q psy15734        261 E  261 (314)
Q Consensus       261 ~  261 (314)
                      .
T Consensus        93 ~   93 (105)
T d1l6xa1          93 P   93 (105)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1ugna2 b.1.1.4 (A:98-195) Ligand binding domain of lir-1 (ilt2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of lir-1 (ilt2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.6e-05  Score=50.25  Aligned_cols=78  Identities=14%  Similarity=0.153  Sum_probs=43.7

Q ss_pred             CeEEcCCCcceeecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEE
Q psy15734        176 PMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       176 p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      |.+...+. ..|..|++|+|.|... .....+.++|++......... .......+  ....+.|.++..+|+|+|+|.-
T Consensus         5 PsLsa~P~-~~v~~G~~VTL~C~~~-~~~~~f~L~k~g~~~~~~~~~-~~~~~~~~--~~a~F~l~~v~~~~~G~Y~C~y   79 (98)
T d1ugna2           5 PTLSAQPS-PVVNSGGNVTLQCDSQ-VAFDGFILCKEGEDEHPQCLN-SQPHARGS--SRAIFSVGPVSPSRRWWYRCYA   79 (98)
T ss_dssp             CEEEEESC-SEEETTCCEEEEEECS-SCCSEEEEEEC------CEEE-C------C--CEEEEEECCCCTTSCEEEEEEE
T ss_pred             CEEEeeCC-CccCCCCcEEEEeCCC-CCCCEEEEEECCCcCCcEeee-eEEcCCCc--eEEEEEeeecccCCCeEEEEee
Confidence            44444443 3589999999999864 234466666654321110000 00000111  1237999999999999999987


Q ss_pred             eeC
Q psy15734        256 VNA  258 (314)
Q Consensus       256 ~n~  258 (314)
                      ...
T Consensus        80 ~~~   82 (98)
T d1ugna2          80 YDS   82 (98)
T ss_dssp             ECT
T ss_pred             EcC
Confidence            543

>d1c5cl2 b.1.1.2 (L:108-214) Immunoglobulin light chain kappa constant domain, CL-kappa {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain kappa constant domain, CL-kappa
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.91  E-value=2.3e-05  Score=51.54  Aligned_cols=72  Identities=17%  Similarity=0.200  Sum_probs=47.4

Q ss_pred             cCccEEEEEEEeec-CC-ceeEEecCCCeeeecCCceee--eEe-eCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        189 VSQTVELHCHTEAF-PA-SLNYWTNEKGDMIITGDDYED--SRL-INGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-p~-p~~~W~~~~~~~~~~~~~~~~--~~~-~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      .+..++|.|.+.|+ |. ..|.|.+++. ..........  ... ++.|...+.|.|..-..+....|+|++.+....
T Consensus        19 ~~~~~~L~Clv~~f~P~~i~v~W~~ng~-~~~~~~~~~~~~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~~~   95 (107)
T d1c5cl2          19 KSGTASVVCLLNNFYPREAKVQWKVDNA-LQSGNSQESVTEQDSKDSTYSLSSTLTLSKADYEKHKVYACEVTHQGLS   95 (107)
T ss_dssp             HTTEEEEEEEEEEEBSSCCEEEEEETTE-ECCSSEEEEECCCCTTTCCEEEEEEEEEEHHHHTTCCEEEEEEECTTCS
T ss_pred             cCCceEEEEEEEEeeCCCCEEEEEECCE-ECCCCEEEecccccCCCCcEEEEEEEEECHHHhCCCCEEEEEEEECCCC
Confidence            46789999999995 43 3788999743 2222211111  111 233888899999877766666899999986544

>d1f3dh1 b.1.1.1 (H:1-121) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.87  E-value=2.1e-05  Score=51.53  Aligned_cols=70  Identities=11%  Similarity=0.192  Sum_probs=44.2

Q ss_pred             cceeecCccEEEEEEEeecC--CceeEEecCCC--ee-----ee-c----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        184 LEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG--DM-----II-T----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~--~~-----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ...+++|+++.|.|.++|..  .-.+.|++...  .+     +. .          ..++.++.....  ....|.|.++
T Consensus         9 ~~~~kPG~sl~LsC~~SG~s~~~y~~~W~RQ~PGkglewl~~i~~~~~~~~y~~~~~gRftis~D~s~--~t~~L~i~~l   86 (115)
T d1f3dh1           9 PELVKPGASVKVSCKASGYSFIDYNIHWVKQSHGKSLEWIGYIVPYSGGTTFNQKFKGKATLTVDKSS--STAFMHLNSL   86 (115)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEEETTTEEEEEEEECTTTCCEEECGGGBTTEEEEEETTT--TEEEEEECSC
T ss_pred             CcEECCCCCEEEEEEEccccCCCCCcceeEEcCCCccEEeeccCCCCCcccccceeeEEEEEeeccCc--eeeEeeeeec
Confidence            34588999999999999853  34567876311  00     00 0          122333322222  2247999999


Q ss_pred             CCCCCeEEEEEE
Q psy15734        244 LSHQFGSYRCVA  255 (314)
Q Consensus       244 ~~~d~G~Y~C~a  255 (314)
                      +.+|++.|.|..
T Consensus        87 ~~eDtAvYYCAr   98 (115)
T d1f3dh1          87 TFEDSAVYYCAN   98 (115)
T ss_dssp             CGGGCEEEEEEE
T ss_pred             CcCCcEEEEEec
Confidence            999999999954

>d1i8lc_ b.1.1.1 (C:) Immunoreceptor CTLA-4 (CD152), N-terminal fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoreceptor CTLA-4 (CD152), N-terminal fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.87  E-value=3.2e-05  Score=51.85  Aligned_cols=23  Identities=22%  Similarity=0.369  Sum_probs=20.5

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeC
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ..|.|.+++.+|+|.|.|.+...
T Consensus        75 ~~L~I~~l~~~Dsa~YyCa~~~~   97 (118)
T d1i8lc_          75 VNLTIQGLRAMDTGLYICKVELM   97 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEEE
T ss_pred             EEEEeeccccCCCEEEEEeEecc
Confidence            48999999999999999987653

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.87  E-value=7.5e-05  Score=48.43  Aligned_cols=71  Identities=14%  Similarity=0.186  Sum_probs=46.8

Q ss_pred             cCccEEEEEEEeec-CCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        189 VSQTVELHCHTEAF-PAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       189 ~g~~~~l~C~~~g~-p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      .++.+.|.|.+.|+ |+.  .++|.+++..... .........++.|...+.|.|..........|+|+|.+...
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~~~~~~-~~~~~~~~~~gtys~~S~L~v~~~~W~~~~~ytC~V~H~s~   91 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSGKDITT-VNFPPALASGGRYTMSNQLTLPAVECPEGESVKCSVQHDSN   91 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCCSSCEE-EECCCEECSSSCEEEEEEEEECGGGSCTTCEEEEEEEETTS
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCCCcCce-eEeeeEecCCCCEEEEEEEEEeHHHccCCCEEEEEEEECCC
Confidence            47789999999995 553  3457665433221 11111122333488889999988887777789999988654

>d1ogae2 b.1.1.2 (E:119-245) T-cell antigen receptor {Human (Homo sapiens), beta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), beta-chain [TaxId: 9606]

Probab=97.86  E-value=1e-05  Score=55.03  Aligned_cols=85  Identities=15%  Similarity=0.173  Sum_probs=54.1

Q ss_pred             CCeEEc-CCCcceeecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCce----e--e-eEeeCCeeeEEEEEEeecC
Q psy15734        175 PPMLTI-PNQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDY----E--D-SRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       175 ~p~~~~-~~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~----~--~-~~~~~~~~~~s~L~i~~~~  244 (314)
                      ||.+.+ .+.......+..++|.|.+.|+.+.  .|.|++++.. +......    .  . ...++.|...|.|.|..-.
T Consensus         4 PP~V~l~~Ps~~e~~~~~~~tL~C~v~gf~P~~i~v~W~~~g~~-~~~~~~t~~~~~~~~~~~~d~tys~sS~L~v~~~~   82 (127)
T d1ogae2           4 PPEVAVFEPSEAEISHTQKATLVCLATGFYPDHVELSWWVNGKE-VHSGVSTDPQPLKEQPALNDSRYSLSSRLRVSATF   82 (127)
T ss_dssp             CCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSCEEEEEEETTEE-ECSSEEECSSCEESCTTSTTCCEEEEEEEEEEHHH
T ss_pred             CCEEEEECCCHHHhccCCcEEEEEEEEeccCCCeEEEEEECCEE-ccCcEEecceeeeecccCCCCeEEEEEEEEECHHH
Confidence            455443 4444455667889999999996543  6789996433 3211100    0  0 0122347888899998888


Q ss_pred             CCCCe-EEEEEEeeCCC
Q psy15734        245 SHQFG-SYRCVAVNALG  260 (314)
Q Consensus       245 ~~d~G-~Y~C~a~n~~g  260 (314)
                      .++.| .|+|++.....
T Consensus        83 W~~~g~~ytC~V~H~~l   99 (127)
T d1ogae2          83 WQNPRNHFRCQVQFYGL   99 (127)
T ss_dssp             HTCTTCEEEEEEEECCB
T ss_pred             hCCCCCEEEEEEEECCC
Confidence            77766 69999988543

>d1iqdb1 b.1.1.1 (B:1-114) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.85  E-value=3.4e-05  Score=50.48  Aligned_cols=74  Identities=11%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-e-e-----eec-----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D-M-----IIT-----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~-~-----~~~-----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|+|.++|..-  -.+.|++... + +     +..           ..++.++.+...  ....|.|.+
T Consensus         8 g~~~~kPg~sv~LsC~~SG~s~~~y~~~W~RQ~PGkglEwlg~i~~~~~~~~y~~~~~gR~tiS~D~s~--~t~~L~i~~   85 (117)
T d1iqdb1           8 GAEVKKPGASVKVSCKVSGYTLTELPVHWVRQAPGKGLEWVGSFDPESGESIYAREFQGSVTMTADTST--NIAYMELSS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCEEEEEECCCCceeeeeecCCccccceecceeeeeeeeeccccc--ceEEEeecc
Confidence            3456889999999999998643  3556876321 1 0     000           122333332222  234799999


Q ss_pred             cCCCCCeEEEEEEeeC
Q psy15734        243 ILSHQFGSYRCVAVNA  258 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~  258 (314)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDtAvYYCA~~~~  101 (117)
T d1iqdb1          86 LRSDDTAVYYCAVPDP  101 (117)
T ss_dssp             CCGGGCEEEEEEECSS
T ss_pred             cCcCcceEEEEeEcCC
Confidence            9999999999986543

>d1c5db1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.84  E-value=0.0001  Score=48.03  Aligned_cols=85  Identities=19%  Similarity=0.297  Sum_probs=48.9

Q ss_pred             eeEEecCceEEEEEEecccCC--CceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEec
Q psy15734        134 DVVVREGTEVTLECSAVGYPE--PYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTN  211 (314)
Q Consensus       134 ~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~  211 (314)
                      ...+.+|++++|.|.+.|+..  -.+.|++.                         .+|..+..           +.+..
T Consensus         9 ~~lvkPg~sl~LsC~~SG~~~~~~~~~W~RQ-------------------------~PGkglew-----------i~~i~   52 (117)
T d1c5db1           9 PGLVQPSQTLSLTCTVSGFPLTTNGVSWVRQ-------------------------PPGKGLEW-----------IAAIS   52 (117)
T ss_dssp             CSEECTTSCEEEEEEECSSCTTTCCEEEEEE-------------------------CTTSCCEE-----------EEEEC
T ss_pred             CceECCCCCeEEEEEEcCCCccCCceEcccC-------------------------CCCcceee-----------eeccc
Confidence            345788999999999987643  46888872                         11221111           11111


Q ss_pred             CCCeeee-c--CCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        212 EKGDMII-T--GDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       212 ~~~~~~~-~--~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .++.... .  ..++.++.....  ....|.|.+++.+|++.|.|...
T Consensus        53 ~~~~~~y~~s~kgRftiS~D~s~--n~~~L~~~sL~~eDtAvYYCAr~   98 (117)
T d1c5db1          53 SGGSPYYNSALKSRLSINRDTSK--SQVFLKMNSLQTEDTAIYFCTRE   98 (117)
T ss_dssp             TTCCEEECTTTSSSEEEEEETTT--TEEEEEECSCCGGGCEEEEEEEC
T ss_pred             cccccccccccccceEEeccccc--ceeeccccccccCcceEEEEecc
Confidence            1221111 1  234444433222  23489999999999999999643

>d1nlbh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 4 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 4 [TaxId: 10090]

Probab=97.82  E-value=3.8e-05  Score=50.27  Aligned_cols=70  Identities=17%  Similarity=0.261  Sum_probs=44.8

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e--ee---ec------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D--MI---IT------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~--~~---~~------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..  .-.+.|.+... +  ..   +.            ..++.++.+...  ....|.|.+
T Consensus         8 g~~~~kPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~ya~~~kgRftisrD~s~--~tvyL~~~~   85 (118)
T d1nlbh1           8 GPELKKPGETVKISCKASGYTFTDFSMHWVNQAPGKGLNWMGWVNTETGEPTYADDFKGRFAFSLETSA--STAYLQINS   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTTCCEEECGGGSSSEEEEEEGGG--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeccccCCCccceeeeecCcccccchhhhheeeeeEEEecCCc--eeEEeeeee
Confidence            345688999999999999865  34567875321 0  00   00            123333332222  234799999


Q ss_pred             cCCCCCeEEEEE
Q psy15734        243 ILSHQFGSYRCV  254 (314)
Q Consensus       243 ~~~~d~G~Y~C~  254 (314)
                      ++.+|++.|.|.
T Consensus        86 L~~eDtAvYYCA   97 (118)
T d1nlbh1          86 LKNEDTATYFCA   97 (118)
T ss_dssp             CCGGGCEEEEEE
T ss_pred             cccCcceEEEEe
Confidence            999999999994

>d7fabh1 b.1.1.1 (H:1-116) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.81  E-value=5.2e-05  Score=49.57  Aligned_cols=74  Identities=14%  Similarity=0.097  Sum_probs=46.8

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-e--ee----ec----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--MI----IT----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~~----~~----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++... +  ..    ..          ..++.++.+...  ....|.|+++
T Consensus         8 G~~lvkPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwlg~i~~~~~~~y~~~~kgR~tis~D~s~--~~~~L~i~~L   85 (116)
T d7fabh1           8 GPGLVRPSQTLSLTCTVSGTSFDDYYWTWVRQPPGRGLEWIGYVFYTGTTLLDPSLRGRVTMLVNTSK--NQFSLRLSSV   85 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCSTTSEEEEEEECTTSCCEEEEEECTTSCEEECGGGTTTEEEEEETTT--TEEEEEECSC
T ss_pred             CCceECCCCCEEEEEEEeeecCCCCcceeceECCCCcceeeeeecccccceeccceeecceeecccch--hhhhcccccc
Confidence            3446889999999999998654  3556876321 0  00    00          122333332222  2348999999


Q ss_pred             CCCCCeEEEEEEeeC
Q psy15734        244 LSHQFGSYRCVAVNA  258 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~  258 (314)
                      +.+|++.|.|.....
T Consensus        86 ~~eDtAvYyCAr~~~  100 (116)
T d7fabh1          86 TAADTAVYYCARNLI  100 (116)
T ss_dssp             CGGGCEEEEEEEECS
T ss_pred             ccccceEEEeeeecC
Confidence            999999999976443

>d1r0ah1 b.1.1.1 (H:1-123) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.81  E-value=9.2e-05  Score=49.04  Aligned_cols=71  Identities=15%  Similarity=0.158  Sum_probs=44.1

Q ss_pred             cceeecCccEEEEEEEeecCC----ceeEEecCC---Ceeee----c-C---------CceeeeEeeCCeeeEEEEEEee
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA----SLNYWTNEK---GDMII----T-G---------DDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~---~~~~~----~-~---------~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ...+++|++++|.|.+.|..-    -.+.|++..   +...+    . .         .++.++.+...  ....|.|.+
T Consensus         9 ~~~vkpg~sv~LsC~~SG~s~s~~~y~~~W~RQ~pGkgle~i~~i~~~~~~~y~~~~k~Rftis~D~s~--~~~~L~i~s   86 (123)
T d1r0ah1           9 PGIVQPSQPFRLTCTFSGFSLSTSGIGVTWIRQPSGKGLEWLATIWWDDDNRYNPSLKSRLTVSKDTSN--NQAFLNMMT   86 (123)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTSCCEEEEEEETTSCCEECTTTGGGEEEEEEGGG--TEEEEEECS
T ss_pred             CceECCCCCeEEEEEEcCCccCCCCCeeeccccCCCcceEeeeeecCCccccccceeeEEEEccccccc--eeEEcceee
Confidence            345789999999999998542    245687521   11100    1 0         12333322221  234799999


Q ss_pred             cCCCCCeEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAV  256 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~  256 (314)
                      ++.+|++.|.|...
T Consensus        87 l~~eDsAvYyCAr~  100 (123)
T d1r0ah1          87 VETADTAIYYCAQS  100 (123)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cccccceEEeeccc
Confidence            99999999999754

>d1jpth1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.80  E-value=3.7e-05  Score=50.24  Aligned_cols=72  Identities=15%  Similarity=0.131  Sum_probs=46.0

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|.+... +  .    +. .          ..++.++.+...  ....|.|.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~~~ya~s~kgR~tiSrD~s~--nt~yL~m~~   85 (117)
T d1jpth1           8 GGGLVQPGGSLRLSCAASGFNIKEYYMHWVRQAPGKGLEWVGLIDPEQGNTIYDPKFQDRATISADNSK--NTAYLQMNS   85 (117)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEECTTTCCEEECTTTTTTEEEEEEGGG--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcceeCCCcceEeeeecccccccccccccceeeEEEEecccc--ceEEecccc
Confidence            3456889999999999998653  3556765321 0  0    00 0          123333332222  234799999


Q ss_pred             cCCCCCeEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAV  256 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~  256 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jpth1          86 LRAEDTAVYYCARD   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCCceEEEEeec
Confidence            99999999999653

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.80  E-value=3.8e-05  Score=48.73  Aligned_cols=78  Identities=18%  Similarity=0.256  Sum_probs=49.8

Q ss_pred             cCCcceEEEcCCcEEEEEEecCCCceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEE
Q psy15734         26 EPVANVTATVGKEALMACVVENLREYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQ  105 (314)
Q Consensus        26 ~~~~~~~v~~g~~~~l~C~~~~~~~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~  105 (314)
                      ..++.+.+.+|+++.++|.+.. |...++-.+..+..+.       ..+..+....   +. =+.|.+++..|.|.|.|.
T Consensus        10 ~~p~~V~v~eg~~~vIPC~vT~-P~~~VtL~~~~~~~~~-------p~g~~v~~Dp---k~-Gf~I~~~~~~~~g~y~C~   77 (95)
T d1fltx_          10 EIPEIIHMTEGRELVIPCRVTS-PNITVTLKKFPLDTLI-------PDGKRIIWDS---RK-GFIISNATYKEIGLLTCE   77 (95)
T ss_dssp             SSCEEEEECTTSCEEECCCBSC-TTSCCEEEETTTEEEC-------CCSSSEEEET---TT-EEEESSCCGGGCEEEEEE
T ss_pred             CCCCEEEEeCCCCEEEEccCCC-CCceeEEEeccCCccC-------CCCCEEEECC---CC-CEEEeCCCcccCeEEEEE
Confidence            3456788999999999999976 4455554453433221       1112222211   11 288999999999999999


Q ss_pred             EecCCCccee
Q psy15734        106 INTVPMTSQK  115 (314)
Q Consensus       106 ~~~~~~~~~~  115 (314)
                      +...+....+
T Consensus        78 a~~~g~~~~S   87 (95)
T d1fltx_          78 ATVNGHLYKT   87 (95)
T ss_dssp             EEETTEEEEE
T ss_pred             EEECCEEEEE
Confidence            9765544333

>d1dn0b1 b.1.1.1 (B:1-120) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 2.1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 2.1 [TaxId: 9606]

Probab=97.79  E-value=0.00014  Score=47.88  Aligned_cols=20  Identities=25%  Similarity=0.541  Sum_probs=17.8

Q ss_pred             EEEEEeecCCCCCeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..|.|.+++.+|++.|.|..
T Consensus        78 ~~L~i~~l~~eDtA~YYCAr   97 (120)
T d1dn0b1          78 FSLKLSSVTAADTAVYYCAR   97 (120)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             ecccccccccccccEEEEEe
Confidence            47999999999999999943

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.79  E-value=4.8e-05  Score=48.64  Aligned_cols=66  Identities=11%  Similarity=0.170  Sum_probs=40.1

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeeecCCcee-eeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYE-DSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~-~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +..++|.|.+.|+.+.  .+.|++++. ......... .....++ |...+.|.+..   ++...|+|++....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~vtW~~~g~-~~~~~~~~~~~~~~~~~~~~~~s~l~v~~---~~~~~ytC~V~H~~   84 (95)
T d1k5na1          15 DHEATLRCWALGFYPAEITLTWQRDGE-DQTQDTELVETRPAGDRTFQKWAAVVVPS---GEEQRYTCHVQHEG   84 (95)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETTE-ECGGGCEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEeCCCCEEEEEECCE-EcCCCceeccEEcCCCCeEEEEEEEEEEc---CCCCEEEEEEEECc
Confidence            5679999999997665  558999743 332222111 1222233 55666666653   33457999998754

>d1qnzh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.78  E-value=0.00018  Score=47.45  Aligned_cols=21  Identities=19%  Similarity=0.350  Sum_probs=18.5

Q ss_pred             EEEEEeecCCCCCeEEEEEEe
Q psy15734        236 MTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~~L~i~~L~~eDsAvYYCA~~   99 (119)
T d1qnzh_          79 VYLEFSRLTSDDSAVYYCAIH   99 (119)
T ss_dssp             EEEEEEEECGGGCEEEEEEEC
T ss_pred             eeeeecccCccceeEEEEEEe
Confidence            379999999999999999654

>d3b5ha2 b.1.1.4 (A:23-102) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.78  E-value=0.0002  Score=42.49  Aligned_cols=58  Identities=19%  Similarity=0.358  Sum_probs=38.8

Q ss_pred             ecCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEee
Q psy15734        188 FVSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|..+.|+|..+.++.+  --.|.|+ ++.+......      +.   ...+.|..  .+|+|.|.|+..+
T Consensus        10 ~~~sk~~LtCnLt~s~~~i~ghrW~K~-gkvl~ed~~~------~~---~tey~V~~--~D~SGeY~CVFl~   69 (80)
T d3b5ha2          10 DLGSKILLTCSLNDSATEVTGHRWLKG-GVVLKEDALP------GQ---KTEFKVDS--DDQWGEYSCVFLP   69 (80)
T ss_dssp             EETTEEEEEEEEESCSSCCCEEEEESS-SEEEECTTCC------CS---EEEEEECG--GGCCEEEEEEEES
T ss_pred             cCCCCEEEEEECCCCCCceeeeEEeeC-CEEccccCCC------CC---ceEEEEec--CCCCceEEEEEcC
Confidence            568899999999876654  3369996 5555433211      11   12666764  7799999999653

>d2ck0h1 b.1.1.1 (H:1-106) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.78  E-value=4.1e-05  Score=49.35  Aligned_cols=72  Identities=18%  Similarity=0.253  Sum_probs=46.0

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCCe---e----ee-c------------CCceeeeEeeCCeeeEEEEEE
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKGD---M----II-T------------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~~---~----~~-~------------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      ....+++|+++.|+|.++|..-  -.+.|++....   .    +. .            ..++.++.+...  ....|.|
T Consensus         8 G~~~vkPG~Sl~LsC~~SG~t~~~~~~~WvRQ~PGkglEw~g~i~~~~~~~~~~ya~~~kgR~tiS~D~s~--~t~~L~i   85 (109)
T d2ck0h1           8 GGGLVQPRGSLKLSCAASGFTFNTDAMNWVRQAPGKGLEWVARIRSKGFNFATYYADSVRDRFTISRDDSQ--SMLYLQM   85 (109)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTT--TEEEEEE
T ss_pred             CCCeECCCCCeEEEEEECCCcccccccccceeCCCcceecccccccccccccceeccccccCceecccccc--ceeEecc
Confidence            3456889999999999998653  35668763211   0    00 0            113333332222  2347999


Q ss_pred             eecCCCCCeEEEEEEe
Q psy15734        241 RSILSHQFGSYRCVAV  256 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~  256 (314)
                      .+++.+|++.|.|.-.
T Consensus        86 ~sL~~eDTAvYYCAr~  101 (109)
T d2ck0h1          86 NNLKTEDTGIYYCVRG  101 (109)
T ss_dssp             CSCCGGGCEEEEEEEE
T ss_pred             cCCCHhHCEEEEEEEc
Confidence            9999999999999753

>d2fbjh1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.77  E-value=9.9e-05  Score=48.34  Aligned_cols=75  Identities=17%  Similarity=0.251  Sum_probs=47.4

Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCCC-e--e----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKG-D--M----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~-~--~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-.  .+.|.+... +  .    +. .          ..++.++.  +.......|.|.+
T Consensus         8 G~~~vkpg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSr--D~s~nt~~L~~~s   85 (118)
T d2fbjh1           8 GGGLVQPGGSLKLSCAASGFDFSKYWMSWVRQAPGKGLEWIGEIHPDSGTINYTPSLKDKFIISR--DNAKNSLYLQMSK   85 (118)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECTTTTTTEEEEE--CSSSCEEEEEECS
T ss_pred             CCceECCCCCEEEEEEECCccccCCceeeeeecCCcceeeeeecCcccccccccccceeeEEEee--cCccceeeccccc
Confidence            34468899999999999986543  456875311 0  0    00 0          12233332  2222334799999


Q ss_pred             cCCCCCeEEEEEEeeCC
Q psy15734        243 ILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~  259 (314)
                      ++.+|++.|.|......
T Consensus        86 L~~eDtAvYYCAr~~~~  102 (118)
T d2fbjh1          86 VRSEDTALYYCARLHYY  102 (118)
T ss_dssp             CCGGGCEEEEEEEEETT
T ss_pred             cCCCcceEEEeeEecCC
Confidence            99999999999765543

>d1mjuh2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.77  E-value=3.3e-05  Score=50.19  Aligned_cols=72  Identities=13%  Similarity=0.151  Sum_probs=44.4

Q ss_pred             ecCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        188 FVSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      ..++.+.|.|.+.|+.+  ..|.|..++.....  ........++.|...+.|.|..-... .+.|+|+|.+..+..
T Consensus        18 ~~~~~~~l~Cl~~gf~P~~i~v~W~~~~~~~~~--~~~~~~~~~g~ys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   91 (102)
T d1mjuh2          18 TSGSSVTLGCLVKGYFPEPVTLTWNSGSLSSGV--HTFPAVLQSDLYTLSSSVTVTSSTWP-SQSITCNVAHPASST   91 (102)
T ss_dssp             ----CEEEEEEEEEEBSSCCEEEEGGGTBCTTE--EECCCEEETTEEEEEEEEEECTTTTT-TSCCEEEEEEGGGTE
T ss_pred             cCCCcEEEEEEEeeeeCCCeEEEECcCCccCCe--EecccccCCCCEEEEEEEEEehhHcC-CceEEEEEEECCCCE
Confidence            35788999999999654  36789765322111  11112223344888889998877764 568999999876543

>d1a2yb_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 5 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 5 [TaxId: 10090]

Probab=97.75  E-value=4.6e-05  Score=49.78  Aligned_cols=72  Identities=17%  Similarity=0.224  Sum_probs=45.7

Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCC---Ceeee---c-----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEK---GDMII---T-----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~---~~~~~---~-----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ....+++|+++.|.|.++|..-.  .+.|++..   +...+   .           ..++.++.+..  .....|.|.++
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewlg~i~~~~~~~y~~s~kgR~tis~D~s--~n~~~L~~~~l   85 (116)
T d1a2yb_           8 GPGLVAPSQSLSITCTVSGFSLTGYGVNWVRQPPGKGLEWLGMIWGDGNTDYNSALKSRLSISKDNS--KSQVFLKMNSL   85 (116)
T ss_dssp             CCSEECTTSCEEEEEEEESSCTTSSEEEEEEECTTSCCEEEEEECTTSCEEECTTTGGGEEEEEEGG--GTEEEEEECSC
T ss_pred             CCceECCCCCeEEEEEEcccccCCCCCccceECCCcceeeeeecCccccceecccccccceEeccCC--CceEEcceeee
Confidence            34468899999999999986543  45687632   11000   0           11223332222  23347999999


Q ss_pred             CCCCCeEEEEEEe
Q psy15734        244 LSHQFGSYRCVAV  256 (314)
Q Consensus       244 ~~~d~G~Y~C~a~  256 (314)
                      +.+|++.|.|.-.
T Consensus        86 ~~eDTAvYYCAr~   98 (116)
T d1a2yb_          86 HTDDTARYYCARE   98 (116)
T ss_dssp             CGGGCEEEEEEEE
T ss_pred             eeccceEEEEEEe
Confidence            9999999999753

>d1oari_ b.1.1.1 (I:) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.75  E-value=8.4e-05  Score=47.68  Aligned_cols=69  Identities=13%  Similarity=0.234  Sum_probs=39.1

Q ss_pred             cCccEEEEEEEeecCC--ceeEEecCCC-e-------eeec----------CCceeeeEeeCCeeeEEEEEEeecCCCCC
Q psy15734        189 VSQTVELHCHTEAFPA--SLNYWTNEKG-D-------MIIT----------GDDYEDSRLINGYSCHMTLKIRSILSHQF  248 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~--p~~~W~~~~~-~-------~~~~----------~~~~~~~~~~~~~~~~s~L~i~~~~~~d~  248 (314)
                      +|+++.|.|.++|..-  -.+.|++... +       +...          ..++.+  ..+.......|.|.+++.+|+
T Consensus         1 PG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwl~~i~~~~~~~~y~~~~~~R~ti--S~D~s~~t~~L~~~sL~~eDT   78 (103)
T d1oari_           1 PGASVKLSCKASGYTFTSYWMHWVKQRPGRGLEWIGRIDPNGGGTKYNEKFKSKATL--TVDKPSSTAYMQLSSLTSEDS   78 (103)
T ss_dssp             CCCCEEEEEECCSSCSTTSEEEEEEEC----CEEEEEEC----CEEECTTTTTTEEE--EC----CEEEEEECCC---CC
T ss_pred             CCCCeEEEEEEECCChhcCceeeEEeCCCCceEeeeeccccccccccccceeeceEE--eccccccEEEeeeeecccccc
Confidence            5899999999998653  3567886321 0       0001          122222  222222345899999999999


Q ss_pred             eEEEEEEeeCC
Q psy15734        249 GSYRCVAVNAL  259 (314)
Q Consensus       249 G~Y~C~a~n~~  259 (314)
                      +.|.|......
T Consensus        79 AvYYCAr~~~~   89 (103)
T d1oari_          79 AVYYCARMWYY   89 (103)
T ss_dssp             SEEEEEEEECS
T ss_pred             EEEEeEEECCC
Confidence            99999765443

>d1mfah1 b.1.1.1 (H:251-367) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.75  E-value=4.8e-05  Score=49.86  Aligned_cols=72  Identities=13%  Similarity=0.254  Sum_probs=44.9

Q ss_pred             CCcceeecCccEEEEEEEeecC--CceeEEecCCC-e-e-----ee-c----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D-M-----II-T----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~-~-----~~-~----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+++|+++.|.|.++|..  .-.+.|.+... + +     +. .          ..++.++.+...  ....|.|.
T Consensus         7 sg~~~~kPG~sl~LsC~~SG~s~s~~~~~WvRQ~PGkglEwl~~i~~~~~~~~ya~~~~~R~t~s~D~s~--~~~~L~i~   84 (117)
T d1mfah1           7 SGTVVARPGASVKMSCKASGYTFTNYWMHWIKQRPGQGLEWIGAIYPGNSATFYNHKFRAKTKLTAVTST--TTAYMELS   84 (117)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGSEEEEEEEETTTEEEEEEEEETTTTEEEECTTTTTTEEEEEETTT--TEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcccCCCCCceEeeeeCCCCcceeeEccCcccccccccccceeeEEEEcccCc--cEeEeeec
Confidence            3445678999999999999854  33556765211 1 0     00 0          112233322222  23479999


Q ss_pred             ecCCCCCeEEEEEE
Q psy15734        242 SILSHQFGSYRCVA  255 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a  255 (314)
                      +++.+|++.|.|..
T Consensus        85 ~L~~eDtAvYYCAr   98 (117)
T d1mfah1          85 SLTSEDSAVYYCTR   98 (117)
T ss_dssp             SCCGGGCEEEEEEE
T ss_pred             ccCCCcceEEEEec
Confidence            99999999999964

>d1pg7x1 b.1.1.1 (X:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.74  E-value=0.00019  Score=47.31  Aligned_cols=22  Identities=14%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        79 v~L~i~~l~~eDtA~YYCAr~~  100 (120)
T d1pg7x1          79 AYIELVRLTSNDSAVYYCARED  100 (120)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEccccccCCCcceEEEeeecC
Confidence            3799999999999999997643

>d1yjdc1 b.1.1.1 (C:1-118) CD28 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD28
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=0.00012  Score=48.82  Aligned_cols=72  Identities=10%  Similarity=0.073  Sum_probs=43.1

Q ss_pred             ceeecCccEEEEEEEeecCC--c-eeEEecCCCee---ee---c---------CCceeeeEeeCCeeeEEEEEEeecCCC
Q psy15734        185 EGAFVSQTVELHCHTEAFPA--S-LNYWTNEKGDM---II---T---------GDDYEDSRLINGYSCHMTLKIRSILSH  246 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~--p-~~~W~~~~~~~---~~---~---------~~~~~~~~~~~~~~~~s~L~i~~~~~~  246 (314)
                      ..+..|++++|.|...+...  . .++|++..+..   +.   .         ..++........  ...+|.|.+++.+
T Consensus        10 ~~v~~g~svtL~C~~s~~~~~~~~~~w~~q~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~--~~~~L~I~~l~~~   87 (118)
T d1yjdc1          10 MLVAYDNAVNLSCKYSYNLFSREFRASLHKGLDSAVEVCVVYGNYSQQLQVYSKTGFNCDGKLGN--ESVTFYLQNLYVN   87 (118)
T ss_dssp             EEECBTTBEEEEEEESCCSSCSEEEEEEEESTTCCCEEEEEEEESSSCCEEECSSSCEEEEEECS--SEEEEEEESCCGG
T ss_pred             cEEeCCCCEEEEEEEecCCCCccEEEEEEECCCCccEEEEEEeCCCeEECCccCCcEEEEEECCC--CeEEEEECCCCcc
Confidence            34678999999999875432  2 23455543321   11   0         111222222221  2347999999999


Q ss_pred             CCeEEEEEEeeC
Q psy15734        247 QFGSYRCVAVNA  258 (314)
Q Consensus       247 d~G~Y~C~a~n~  258 (314)
                      |+|.|.|.+...
T Consensus        88 DsavYyCa~~~~   99 (118)
T d1yjdc1          88 QTDIYFCKIEVM   99 (118)
T ss_dssp             GCEEEEEEEEEE
T ss_pred             cCeEEEEEEecc
Confidence            999999987543

>d1mjuh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.73  E-value=5.3e-05  Score=49.32  Aligned_cols=73  Identities=14%  Similarity=0.190  Sum_probs=46.9

Q ss_pred             CCCcceeecCccEEEEEEEeecCC--ceeEEecCCC---ee----ee-c----------CCceeeeEeeCCeeeEEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM----II-T----------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~----~~-~----------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      .+....+++|+++.|.|.++|..-  -.+.|.+...   ..    +. .          ..++.++.+...  ....|.|
T Consensus         6 esg~~~~kPg~sl~LsC~~SG~s~~~~~~~WvRQ~PGkgLEw~g~i~~~~~~~~ya~s~kgR~tiS~D~s~--~tvyL~~   83 (116)
T d1mjuh1           6 QPGAELVKPGASVKLSCKASGYTFTNYWINWVKQRPGQGLEWIGNIYPGSSYTHYNEKFKNKATLTVDTSS--STAYMQL   83 (116)
T ss_dssp             CCSEEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT--TEEEEEE
T ss_pred             eECCcEECCCCCEEEEEEEccCccccCceEeeeeCCCcceeeeeecCccccccccccccceeeeEeccccc--ceeEecc
Confidence            345567899999999999998654  3556876211   00    11 1          113333332222  2348999


Q ss_pred             eecCCCCCeEEEEEE
Q psy15734        241 RSILSHQFGSYRCVA  255 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a  255 (314)
                      .+++.+|.+.|.|..
T Consensus        84 ~sL~~eDtAvYYCAr   98 (116)
T d1mjuh1          84 SSLTSDDSAVYYCAN   98 (116)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             cccCCCCceEEEEcc
Confidence            999999999999964

>d1ncwh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.73  E-value=4.8e-05  Score=49.94  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=46.1

Q ss_pred             CcceeecCccEEEEEEEeecCCc---eeEEecCC-Ceee------ec----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS---LNYWTNEK-GDMI------IT----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p---~~~W~~~~-~~~~------~~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.+.|..-.   .+.|.+.. ++-+      ..          ..++.++.+...  ....|.|.+
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglEwig~i~~~~~t~y~~s~kgR~TiS~D~s~--nt~~L~~~s   85 (119)
T d1ncwh1           8 GPGLVKPSQSLSLTCTVTGYSITSDFAWNWIRQFPGNKLEWMGYINYSGFTSHNPSLKSRISITRDTSK--NQFFLQLNS   85 (119)
T ss_dssp             SCSEECTTSCEEEEEEEESSCTTSSEEEEEEEEETTTEEEEEEEEETTSCEEECGGGTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCcEECCCCCEEEEEEEccccccCCCccccceECCCcceeeeeeccccccchhchhccccceEeccccc--ceeeccccc
Confidence            44568899999999999997642   35686521 1100      00          123333332222  234799999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|.+.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (119)
T d1ncwh1          86 VTTEDTATYYCAGLL  100 (119)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             cccCCceEEEEeEec
Confidence            999999999996443

>d1indh1 b.1.1.1 (H:1-114) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.71  E-value=6e-05  Score=49.02  Aligned_cols=71  Identities=15%  Similarity=0.281  Sum_probs=45.3

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-e-e-----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D-M-----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~-~-----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++... + +     +. .          ..++.++.....  ....|.|.+
T Consensus         8 G~~~vkpG~sl~LsC~~SG~~~s~~~~~WvRQ~PGkglEwv~~i~~~~~~~~y~~s~kgRftiSrD~s~--nt~~L~~~~   85 (114)
T d1indh1           8 GGDSVKPGGSLKLSCAASGFTLSGETMSWVRQTPEKRLEWVATTLSGGGFTFYSASVKGRFTISRDNAQ--NNLYLQLNS   85 (114)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECSTTCCEEECTTTTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEECccCccCCceeccccCCCCccEEeeecccccchhhhhhhheeeEEEeccCcc--ceeeeeeee
Confidence            3456889999999999998653  4556876321 0 0     10 1          122333332222  234799999


Q ss_pred             cCCCCCeEEEEEE
Q psy15734        243 ILSHQFGSYRCVA  255 (314)
Q Consensus       243 ~~~~d~G~Y~C~a  255 (314)
                      ++.+|++.|.|..
T Consensus        86 L~~eDtAvYYCA~   98 (114)
T d1indh1          86 LRSEDTALYFCAS   98 (114)
T ss_dssp             CCGGGCEEEEEEC
T ss_pred             eccCcccEEEECC
Confidence            9999999999964

>d1nfdf1 b.1.1.1 (F:1-114) Immunoglobulin heavy chain variable domain, VH {Hamster (Cricetulus griseus) [TaxId: 10029]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Hamster (Cricetulus griseus) [TaxId: 10029]

Probab=97.71  E-value=0.0002  Score=47.02  Aligned_cols=92  Identities=15%  Similarity=0.250  Sum_probs=50.5

Q ss_pred             ceeEEecCceEEEEEEecccCC--CceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEe
Q psy15734        133 TDVVVREGTEVTLECSAVGYPE--PYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWT  210 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p~--p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~  210 (314)
                      ....+.+|++++|.|.+.|+..  -.+.|++.                         .+|..+.........+......+
T Consensus         8 G~~~vkPG~sl~LsC~~SG~~~~~~~~~WvRQ-------------------------~PGkglEwv~~i~~~~~~~~t~Y   62 (121)
T d1nfdf1           8 GGDLVQPGSSLKVSCAASGFTFSDFWMYWVRQ-------------------------APGKGLEWVGRIKNIPNNYATEY   62 (121)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGEEEEEEEE-------------------------CTTSCEEEEEEECCTTTTTCEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceeecee-------------------------cCCccceeeeeeccccccccccc
Confidence            3456788999999999887643  35788872                         22333333322221111100110


Q ss_pred             cCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        211 NEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       211 ~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      -     ..-..++.++.+....  ...|.|.+++.+|++.|.|...
T Consensus        63 a-----~s~kgR~tiSrD~s~n--t~yL~~~~L~~eDTAvYYCAr~  101 (121)
T d1nfdf1          63 A-----DSVRGRFTISRDDSRN--SIYLQMNRLRVDDTAIYYCTRA  101 (121)
T ss_dssp             C-----GGGTTTBCCEECTTTS--EEEEEEESCCGGGCEECEEEEE
T ss_pred             c-----hheeeeeEEccccccc--eeeceecccCCCcceEEEEecc
Confidence            0     0112334444332222  2379999999999999999654

>d1zvya1 b.1.1.1 (A:2-125) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.70  E-value=6.4e-05  Score=49.84  Aligned_cols=72  Identities=15%  Similarity=0.188  Sum_probs=46.7

Q ss_pred             cceeecCccEEEEEEEeecCC--ceeEEecCCC---ee----eec-----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM----IIT-----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~----~~~-----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ...+++|+++.|.|.++|..-  -.+.|++...   ..    +..           ..++.++.+...  ....|.|.++
T Consensus         8 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tis~D~s~--~t~yLq~~sL   85 (124)
T d1zvya1           8 GGSVQAGGSLRLSCAASGSTDSIEYMTWFRQAPGKAREGVAALYTHTGNTYYTDSVKGRFTISQDKAK--NMAYLRMDSV   85 (124)
T ss_dssp             CEECCTTCCEEEEEEEESCSTTCCEEEEEEECTTSCCEEEEEEETTTTEEEECGGGTTTEEEEEEGGG--TEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCcccccccccccccCCccceEEEeecccccccceeccccccccEEeccccc--ceeeceeccc
Confidence            346889999999999998653  3556876321   00    111           123333332222  3358999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|++.|.|....
T Consensus        86 ~~eDtAvYYCAr~~   99 (124)
T d1zvya1          86 KSEDTAIYTCGATR   99 (124)
T ss_dssp             CGGGCEEEEEEECS
T ss_pred             cCCcceEEEEeecc
Confidence            99999999997654

>d1eapb1 b.1.1.1 (B:1-124) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=6.8e-05  Score=49.21  Aligned_cols=71  Identities=13%  Similarity=0.175  Sum_probs=45.4

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC---ee---eec------------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM---IIT------------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~---~~~------------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++...   ..   .+.            ..++.++.+...  ....|.|.+
T Consensus         8 G~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgRftiSrD~s~--nt~~L~~~s   85 (119)
T d1eapb1           8 GTELVKPGASVKISCKASGYISTDHAIHWVKQRPEQGLEWIGYISPGNGDIKYNEKFKVKATLTADQSS--STAYMQLNS   85 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECTTTCCEEECGGGTTTEEEEEEGGG--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEccCcccCCCCccceeCCcccceeeeecCCcccchhhhhhhhcceEEEcccCc--ceEEeeeec
Confidence            3446789999999999998653  3566875321   10   011            123333332222  234899999


Q ss_pred             cCCCCCeEEEEEE
Q psy15734        243 ILSHQFGSYRCVA  255 (314)
Q Consensus       243 ~~~~d~G~Y~C~a  255 (314)
                      ++.+|.+.|.|..
T Consensus        86 L~~eDTAvYYCAr   98 (119)
T d1eapb1          86 LTSEDSAVYFCKR   98 (119)
T ss_dssp             CCGGGCEEEEEEE
T ss_pred             ccCCcceEEEEEE
Confidence            9999999999954

>d1jnhb1 b.1.1.1 (B:1-117) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.69  E-value=6.6e-05  Score=49.06  Aligned_cols=72  Identities=18%  Similarity=0.230  Sum_probs=46.1

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCC---Ce-----eeec----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEK---GD-----MIIT----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~---~~-----~~~~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++..   +.     +...          ..++.++.+...  ....|.|.+
T Consensus         8 G~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglewvg~i~~~~~~t~ya~s~kgRfTiS~D~s~--~t~yLq~~~   85 (117)
T d1jnhb1           8 GAELARPGASVKLSCRTSGYSFTTYWMQWVRQRPGQGLEWIAAIYPGDDDARYTQKFKGKATLTADRSS--SIVYLQLNS   85 (117)
T ss_dssp             CCEECCTTCCEEEEEEEESSCSSSSEEEEEEECTTSCEEEEEEEEGGGTEEEECTTTTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceeeeeeCCCCcceeeeccCccccccccccceeEEEEEeccCcc--ceeeecccc
Confidence            3456789999999999998654  355687622   10     0101          123334332222  234799999


Q ss_pred             cCCCCCeEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAV  256 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~  256 (314)
                      ++.+|++.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (117)
T d1jnhb1          86 LTSEDSAVYSCSRG   99 (117)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEeec
Confidence            99999999999653

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=97.68  E-value=7.3e-05  Score=48.15  Aligned_cols=80  Identities=14%  Similarity=0.332  Sum_probs=44.8

Q ss_pred             CCCceecCCcceEEEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEe-eee--eeecCcCEEEEeCCceeEEEEEeee
Q psy15734         20 DMPRFAEPVANVTATVGKEALMACVVENL--REYKVAWVKMITQTILSI-HHK--VVTQNKRVSITFNDHRSWFLHLRDV   94 (314)
Q Consensus        20 ~~p~~~~~~~~~~v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~L~i~~~   94 (314)
                      .+|.+..-+.. .+..|+.++|.|.+.+.  +...|.|++++ ..+... ...  ....++.+.+..      .|.+   
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gFyP~~i~v~W~~ng-~~v~~~~~~t~~~~~~dgtf~~~s------~l~v---   70 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNIFPPVINITWLRNS-KSVADGVYETSFFVNRDYSFHKLS------YLTF---   70 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEECSSCCEEEEEESS-SBCCSSEEECCCEECTTSCEEEEE------EEEE---
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeEECCCCEEEEEeCC-eeccCCceeeeeEECCCCCEEEEE------EeEE---
Confidence            34555432221 24568899999999884  35899999954 333211 000  112222333321      3444   


Q ss_pred             cCCCCeEEEEEEecCC
Q psy15734         95 QETDRGWYMCQINTVP  110 (314)
Q Consensus        95 ~~~d~G~Y~C~~~~~~  110 (314)
                      ..++.+.|+|.+.+.+
T Consensus        71 ~~~~~~~ytC~V~H~s   86 (100)
T d1muja1          71 IPSDDDIYDCKVEHWG   86 (100)
T ss_dssp             CCCTTCCEEEEEECTT
T ss_pred             cCCCCCEEEEEEEECC
Confidence            4466778999997654

>d1ct8b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.3 [TaxId: 10090]

Probab=97.68  E-value=0.00011  Score=48.06  Aligned_cols=73  Identities=18%  Similarity=0.232  Sum_probs=46.2

Q ss_pred             CCcceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e----eec-----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M----IIT-----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~----~~~-----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      .....+++|+++.|.|.++|..-  -.+.|.+... +  .    +..           ..++.++.+...  ....|.|.
T Consensus         7 sG~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkgLEwlg~i~~~~~~~~y~~~~~gR~tis~D~s~--~t~yL~i~   84 (118)
T d1ct8b1           7 SGAVLVKPGASVKLSCKTSGFTFSSSYINWLKQKPGQSLEWIAWIYAGSGGTVYNQHFTDKARLTVDTSS--STAYMQFS   84 (118)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCSTTCEEEEEEECTTSCEEEEEEEETTTCCEEECTTSTTTEEEEEEGGG--TEEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEccccCCCCCCcccEECCCCceEeeeeccccccchhhhhheeeeEEEEecCcc--ceEEeccc
Confidence            34456889999999999998653  3556765321 1  0    101           112333332222  23589999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy15734        242 SILSHQFGSYRCVAV  256 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~  256 (314)
                      +++.+|++.|.|...
T Consensus        85 ~L~~eDtAvYYCAr~   99 (118)
T d1ct8b1          85 SLTTEDSAIYYCARY   99 (118)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeee
Confidence            999999999999653

>d1ai1h1 b.1.1.1 (H:1-112) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.3 [TaxId: 10090]

Probab=97.68  E-value=3.1e-05  Score=51.11  Aligned_cols=73  Identities=18%  Similarity=0.161  Sum_probs=46.2

Q ss_pred             CcceeecCccEEEEEEEeecCC----ceeEEecCCC-ee------eecC----------CceeeeEeeCCeeeEEEEEEe
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA----SLNYWTNEKG-DM------IITG----------DDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~~-~~------~~~~----------~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      ....+++|+++.|.|.++|...    -.+.|++... +.      +...          .++.++.+...  ....|.|.
T Consensus         8 G~~~vkPg~sl~LsC~~SG~s~~~s~y~~~W~RQ~PGkglEwl~~i~~~g~t~y~~s~kgRfTiSrD~s~--n~~~L~~~   85 (120)
T d1ai1h1           8 GPAVIKPSQSLSLTCIVSGFSITRTNYCWHWIRQAPGKGLEWMGRICYEGSIYYSPSIKSRSTISRDTSL--NKFFIQLI   85 (120)
T ss_dssp             CCSEECSSSCEEEEEEEESSCTTSTTEEEEEEEECTTSCEEEEEEEETTSCEEECHHHHTTEEEEEETTT--TEEEEEES
T ss_pred             CCceECCCCCEEEEEEEcccccccCccccCcccCCCcccceeeeecccccchhhchhhcccceecccccc--ceeeccee
Confidence            3446889999999999998643    2456876321 11      1111          23333332222  23479999


Q ss_pred             ecCCCCCeEEEEEEee
Q psy15734        242 SILSHQFGSYRCVAVN  257 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n  257 (314)
                      +++.+|++.|.|....
T Consensus        86 sL~~eDtAvYYCAr~~  101 (120)
T d1ai1h1          86 SVTNEDTAMYYCSREN  101 (120)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eeeccceeEEEEEecC
Confidence            9999999999996543

>d2jelh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.68  E-value=0.00011  Score=48.04  Aligned_cols=20  Identities=15%  Similarity=0.356  Sum_probs=17.9

Q ss_pred             EEEEEeecCCCCCeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..|.|.+++.+|++.|.|..
T Consensus        79 ~~L~~~sL~~eDTAvYYCAr   98 (118)
T d2jelh1          79 AYMELARLTSEDSAIYYCAR   98 (118)
T ss_dssp             EEEEECSCCGGGCEEEEEEE
T ss_pred             EeecccccccCcceeeeEEE
Confidence            48999999999999999943

>d1j05b_ b.1.1.1 (B:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.66  E-value=0.00029  Score=46.48  Aligned_cols=22  Identities=23%  Similarity=0.431  Sum_probs=19.1

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        79 ~~L~i~~L~~eDtAvYYCAr~~  100 (121)
T d1j05b_          79 AYLQLTSLTSEDTAVYYCAPFG  100 (121)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEB
T ss_pred             eeecccccCcCcceEEEeEeec
Confidence            3799999999999999997543

>d1n0xh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.65  E-value=0.00011  Score=48.71  Aligned_cols=73  Identities=15%  Similarity=0.183  Sum_probs=46.4

Q ss_pred             CCCcceeecCccEEEEEEEeecCC--ceeEEecCCC---ee----ee-c----------CCceeeeEeeCCeeeEEEEEE
Q psy15734        181 PNQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM----II-T----------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       181 ~~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~----~~-~----------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      .+....+++|+++.|.|.++|..-  -.+.|.+...   ..    +. .          ..++.++.+...  ....|.|
T Consensus         6 esg~~~~kpg~sl~lsC~~SG~~~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~ya~s~kgR~tiS~D~s~--nt~yL~~   83 (127)
T d1n0xh1           6 QSGAEVKKPGASVKVSCQASGYRFSNFVIHWVRQAPGQRFEWMGWINPYNGNKEFSAKFQDRVTFTADTSA--NTAYMEL   83 (127)
T ss_dssp             ECCCEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECTTTCCEEECTTTTTTEEEEEEGGG--TEEEEEE
T ss_pred             eECCceECCCCCEEEEEEEcCCCCCCCCEEEEEeCCCCcceeeeecCccccccccchhccccceEecccCc--eEEEEEE
Confidence            344567899999999999998653  3556875321   00    00 0          123333332222  2347999


Q ss_pred             eecCCCCCeEEEEEE
Q psy15734        241 RSILSHQFGSYRCVA  255 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a  255 (314)
                      .+++.+|++.|.|.-
T Consensus        84 ~~L~~eDtAvYYCAR   98 (127)
T d1n0xh1          84 RSLRSADTAVYYCAR   98 (127)
T ss_dssp             CSCCGGGCEEEEEEE
T ss_pred             EccCCCCceEEEEEe
Confidence            999999999999964

>d1i3ua_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.65  E-value=6.8e-05  Score=50.08  Aligned_cols=73  Identities=14%  Similarity=0.199  Sum_probs=46.9

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC---eeee---c-----------------CCceeeeEeeCCeeeEEE
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG---DMII---T-----------------GDDYEDSRLINGYSCHMT  237 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~---~~~~---~-----------------~~~~~~~~~~~~~~~~s~  237 (314)
                      ....+++|+++.|.|.++|..  .-.+.|++...   ...+   .                 ..++.++.....  ....
T Consensus         8 G~~lvkpg~sl~LsC~~SG~~~s~y~~~W~RQ~PGkglewl~~I~~~~~~~~~~~~~y~~~~kgR~tis~d~s~--~~~~   85 (127)
T d1i3ua_           8 GGGLVQAGDSLKLSCEASGDSIGTYVIGWFRQAPGKERIYLATIGRNLVGPSDFYTRYADSVKGRFAVSRDNAK--NTVN   85 (127)
T ss_dssp             SCEECCTTCCEEEEEEEESSCGGGSEEEEEEECTTSCCEEEEEEEEEESSSSCEEEEECTTTBTTEEEEEEGGG--TEEE
T ss_pred             CCceECCCCCeEEEEEEcCCCCCCCceEeeeeCCccceeEEEEEccccccCCCCcceechhhccceeEeccCCc--eEEE
Confidence            344678999999999999864  34567886321   1111   0                 013333332222  2347


Q ss_pred             EEEeecCCCCCeEEEEEEee
Q psy15734        238 LKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       238 L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      |+|.+++.+|++.|.|....
T Consensus        86 L~i~~l~~eDtAvYYCAr~~  105 (127)
T d1i3ua_          86 LQMNSLKPEDTAVYYCAAKT  105 (127)
T ss_dssp             EEECSCCGGGCEEEEEEEES
T ss_pred             EeeecccccceeEEEEEEEe
Confidence            99999999999999998654

>d1um5h1 b.1.1.1 (H:3-119) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.65  E-value=0.00015  Score=47.43  Aligned_cols=29  Identities=28%  Similarity=0.612  Sum_probs=22.0

Q ss_pred             ceeEEecCceEEEEEEecccC--CCceEEEc
Q psy15734        133 TDVVVREGTEVTLECSAVGYP--EPYVAWRR  161 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~  161 (314)
                      ....+.+|++++|.|.+.|+.  .-.+.|++
T Consensus         7 g~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   37 (117)
T d1um5h1           7 GPVLVKPGGSVKMSCKASEYTLTSYLFQWVK   37 (117)
T ss_dssp             CCEEECTTCCEEEEEEESSCCCSCCEEEEEE
T ss_pred             CCceECCCCCEEEEEEEccccCCCCcCccce
Confidence            445678899999999988764  34688887

>d1tjgh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.65  E-value=0.00024  Score=47.69  Aligned_cols=22  Identities=14%  Similarity=0.301  Sum_probs=19.1

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        80 ~~L~i~~l~~eDtAvYYCAr~~  101 (132)
T d1tjgh1          80 VVLVMTRVSPVDTATYFCAHRR  101 (132)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EEcccccCCcccceEEEEEEec
Confidence            4799999999999999997543

>d1ieha_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.65  E-value=0.00013  Score=48.69  Aligned_cols=73  Identities=16%  Similarity=0.201  Sum_probs=46.4

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCC---Ceee---e--c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEK---GDMI---I--T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~---~~~~---~--~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|+|.++|..-  -.+.|++..   +...   +  .          ..++.++.+..  .....|.|.+
T Consensus         8 G~~lvkPG~Sl~LsC~~SG~s~~~y~~~WvRQ~PGkgLEWlg~I~~~~~~~~Ya~s~kgRfTiSrD~s--~~t~yL~i~~   85 (135)
T d1ieha_           8 GGGLVQPGGSLRVSCAASGFTFSSYHMAWVRQAPGKGLEWVSTINPGDGSTYYADSVKGRFTISRDNA--KNTLYLQMNS   85 (135)
T ss_dssp             CCCEECTTCEEEEEEEEESSCTTTSCEEEEEECSSCCCEEEEEECSSSCCEEECSTTTTTEEEEECTT--TCCEEEEEES
T ss_pred             CCceECCCCCeEEEEEEcCCCCcCCceeccccCCCCceeeeeccCCccccccccccceEeEEEeccCC--CceeEecEee
Confidence            3446889999999999998653  356687532   1000   0  0          12233332222  2234899999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|++.|.|....
T Consensus        86 L~~eDTAvYYCAr~~  100 (135)
T d1ieha_          86 LKSEDTAVYYCAKYS  100 (135)
T ss_dssp             CCSSSCEEEEEEEBS
T ss_pred             eCcccceeeEEEEec
Confidence            999999999997654

>d1ow0a1 b.1.1.2 (A:242-342) Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 2, CH2-alpha
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.63  E-value=3.7e-06  Score=54.84  Aligned_cols=79  Identities=18%  Similarity=0.261  Sum_probs=51.8

Q ss_pred             cCCCcceeecCccEEEEEEEeec--CC-ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        180 IPNQLEGAFVSQTVELHCHTEAF--PA-SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       180 ~~~~~~~v~~g~~~~l~C~~~g~--p~-p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .++....+..+.+++|.|.+.|+  |. ..|.|+++++........  ....++.|...+.|.|..-..+..-.|+|+|.
T Consensus         8 ~~Ps~~~~~~~~~~tL~C~v~~f~~p~~i~v~W~~~~~~~~~~~~~--~~~~~gt~s~~S~L~v~~~~W~~g~~ftC~V~   85 (101)
T d1ow0a1           8 HRPALEDLLLGSEANLTCTLTGLRDASGVTFTWTPSSGKSAVQGPP--ERDLCGCYSVSSVLPGCAEPWNHGKTFTCTAA   85 (101)
T ss_dssp             ECCCHHHHHHCSSCCCEEEETTCCSCCCCCCCBSSCSSCCCEECCC--CCCSTTCCCEEEECTTTHHHHHHTCEEEEEEC
T ss_pred             ECCCHHHHccCCCeEEEEEEeCCCCCcceEEEEEECCceeeeecce--EECCCCCEEEEEEEEEcHHHcCCCCeEEEEEE
Confidence            34555567788999999999985  33 378899876543332221  12223336667777766655555669999999


Q ss_pred             eCCC
Q psy15734        257 NALG  260 (314)
Q Consensus       257 n~~g  260 (314)
                      +...
T Consensus        86 H~~~   89 (101)
T d1ow0a1          86 YPES   89 (101)
T ss_dssp             CSSC
T ss_pred             eCCC
Confidence            8654

>d1mqkh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.62  E-value=0.00014  Score=47.87  Aligned_cols=73  Identities=18%  Similarity=0.216  Sum_probs=46.1

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++... +  .    +. .          ..++.++.+...  ....|.|.+
T Consensus         8 G~~lvkPG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tis~D~s~--nt~~L~i~~   85 (123)
T d1mqkh_           8 GGDLVQPGGSLKLSCAASGFTFSSYTMSWVRQTPEKRLEWVASINNGGGRTYYPDTVKGRFTISRDNAK--NTLYLQMSS   85 (123)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTCCEEEEEEECTTSSCEECCTTTBTTEEEEEEGGG--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEECcccCcCCceEeeecCCCcceeeeeecCccccccccchhccEEEEEEecCcc--cccccceee
Confidence            3446889999999999998653  3456876221 1  0    00 0          122333332222  234799999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtAvYYCAr~~  100 (123)
T d1mqkh_          86 LKSEDTAMYYCVRHE  100 (123)
T ss_dssp             CCGGGCEEEEEEEEE
T ss_pred             eccCcccceeEEecC
Confidence            999999999997654

>d1dfbh1 b.1.1.1 (H:1-126) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.61  E-value=0.00017  Score=47.80  Aligned_cols=73  Identities=16%  Similarity=0.221  Sum_probs=46.2

Q ss_pred             cceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e----ee-c----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M----II-T----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ...+++|+++.|.|.++|..-  -.+.|++... +  .    +. .          ..++.++.+...  ....|.|.++
T Consensus         9 ~~~vkPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglewl~~i~~~~~~~~y~~s~kgR~tiS~D~s~--nt~~L~~~~L   86 (126)
T d1dfbh1           9 GGLVQPGRSLRLSCAASGFTFNDYAMHWVRQAPGKGLEWVSGISWDSSSIGYADSVKGRFTISRDNAK--NSLYLQMNSL   86 (126)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSSEEECGGGTTTEEEEEETTT--TEEEEEECSC
T ss_pred             CceECCCCCeEEEEEECCccccCCcceeceeCCCccceeeeecCcccccchhccccccceEEeccCCC--cEEEeeeeee
Confidence            345789999999999998653  3556776321 0  0    00 1          122333332222  2347999999


Q ss_pred             CCCCCeEEEEEEeeC
Q psy15734        244 LSHQFGSYRCVAVNA  258 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n~  258 (314)
                      +.+|++.|.|.....
T Consensus        87 ~~eDtavYYCAr~~~  101 (126)
T d1dfbh1          87 RAEDMALYYCVKGRD  101 (126)
T ss_dssp             CGGGCEEEEEEEEEC
T ss_pred             ccCcceEEEEEeccC
Confidence            999999999976543

>d2nxyd1 b.1.1.1 (D:3001-3128) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=0.00017  Score=47.92  Aligned_cols=74  Identities=14%  Similarity=0.131  Sum_probs=47.4

Q ss_pred             CCcceeecCccEEEEEEEeecCCc--eeEEecCC---------------Ceee-ec--CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEK---------------GDMI-IT--GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~---------------~~~~-~~--~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      .....+++|+++.|+|.++|..-.  .+.|++..               +... ..  ..++.++.+....  ...|.|.
T Consensus         7 sG~~~~kpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiS~D~s~~--t~yL~~~   84 (128)
T d2nxyd1           7 SGAEVKKPGSSVKVSCKASGDTFIRYSFTWVRQAPGQGLEWMGRIITILDVAHYAPHLQGRVTITADKSTS--TVYLELR   84 (128)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCGGGEEEEEEEECTTSCCEEEEEEETTTTEEEECTTTTTTEEEEEETTTT--EEEEEEC
T ss_pred             ECCceECCCCCEEEEEEEcCCCccCCCcccceeCCCcceeeeeecCCcccccccccceeEEEEEeecCCCc--eEEeeee
Confidence            344568899999999999986644  44676521               1100 00  1233444333222  3479999


Q ss_pred             ecCCCCCeEEEEEEee
Q psy15734        242 SILSHQFGSYRCVAVN  257 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n  257 (314)
                      +++.+|.+.|.|....
T Consensus        85 sL~~eDTA~YYCAr~~  100 (128)
T d2nxyd1          85 NLRSDDTAVYFCAGVY  100 (128)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             eccccCceEEEEeEEe
Confidence            9999999999998654

>d1rhhb1 b.1.1.1 (B:3-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.60  E-value=0.0001  Score=49.16  Aligned_cols=74  Identities=12%  Similarity=0.101  Sum_probs=47.4

Q ss_pred             CCcceeecCccEEEEEEEeecCC--ceeEEecCCC-e--e----eec-----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-D--M----IIT-----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~--~----~~~-----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+++|+++.|+|.++|..-  -.+.|.+... +  .    +..           ..++.++.+...  ....|.|.
T Consensus         6 sg~~~~kPg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglewig~i~~~~g~~~y~~~~kgR~tis~D~s~--~tv~L~~~   83 (130)
T d1rhhb1           6 SGAEVKKPGSSVQVSCKASGGTFSMYGFNWVRQAPGHGLEWMGGIIPIFGTSNYAQKFRGRVTFTADQAT--STAYMELT   83 (130)
T ss_dssp             CCCEEECTTCCEEEEEEETTSCCTTCEEEEEEECTTSCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT--TEEEEEEC
T ss_pred             cCCceECCCCCeEEEEEEeCCCccCCCcceEEeCCccCcEEEeecCCcccccccccceeeeeEEeccCCc--cEEEEEee
Confidence            34456889999999999998653  3556876321 1  0    000           123333332222  23479999


Q ss_pred             ecCCCCCeEEEEEEee
Q psy15734        242 SILSHQFGSYRCVAVN  257 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n  257 (314)
                      +++.+|++.|.|....
T Consensus        84 ~L~~eDtAvYyCAr~~   99 (130)
T d1rhhb1          84 NLRSDDTAVYYCARDF   99 (130)
T ss_dssp             SCCGGGCEEEEEEEEC
T ss_pred             ccCCCCcEEEEEEeec
Confidence            9999999999997654

>d1etzb1 b.1.1.1 (B:1-126) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 6 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 6 [TaxId: 10090]

Probab=97.59  E-value=0.00014  Score=48.47  Aligned_cols=71  Identities=21%  Similarity=0.219  Sum_probs=44.4

Q ss_pred             cceeecCccEEEEEEEeecCC----ceeEEecCC---Cee-ee---c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA----SLNYWTNEK---GDM-II---T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~---~~~-~~---~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ...+++|+++.|.|.+.|..-    ..+.|++..   +.. +.   .          ..++.++.....  ....|.|.+
T Consensus         9 ~~lvkPg~sv~LsC~~SG~s~s~~~~~~~W~RQ~pg~~le~l~~i~~~~~~~~~~s~~~Rftis~d~s~--~t~~L~i~~   86 (126)
T d1etzb1           9 PGILQPSQTLSLTCSFSGFSLSTSGMGVGWIRQPSGEGLEWLADIWWNDKKYYNPSLKSRLTVSKDTSS--NQVFLKITS   86 (126)
T ss_dssp             CSEECTTCCEEEEEEEESSCTTSTTEEEEEEEEETTTCCEEEEEEETTCCEEECTTTTTTEEEEEETTT--TEEEEEECS
T ss_pred             CceECCCCCEEEEEEEeCCccCCCCCCCeEEeCCCCccceEeeecCCCCCceeceeeeEeeEEecccCC--cEEEcceec
Confidence            346788999999999997532    345687521   110 00   0          123333332222  234799999


Q ss_pred             cCCCCCeEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAV  256 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~  256 (314)
                      ++.+|++.|.|...
T Consensus        87 l~~eDtAvYyCAr~  100 (126)
T d1etzb1          87 VDTSDTATYHCARR  100 (126)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             ccccccceEEEEEe
Confidence            99999999999753

>d2b1hh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.57  E-value=0.00028  Score=46.59  Aligned_cols=74  Identities=14%  Similarity=0.181  Sum_probs=46.9

Q ss_pred             CCcceeecCccEEEEEEEeecCC--ceeEEecCC---Cee----eec-----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPA--SLNYWTNEK---GDM----IIT-----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~---~~~----~~~-----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+++|+++.|.|.++|..-  -.+.|++..   +..    +..           ..++.++.+...  ....|.|.
T Consensus         7 sg~~~~kpg~sl~LsC~~SG~~~~~~~~~W~RQ~PGkglewig~i~~~~~~~~ya~s~kgR~tiSrD~s~--~t~yL~~~   84 (124)
T d2b1hh1           7 SGAEVKKSGESLKISCQTSGYSFSDYWIGWVRQMPGKGLEWMGIFYPGDSDSRYSPSFEGQVTMSADRST--NTAHLQWS   84 (124)
T ss_dssp             CCCEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEEETTTTEEEECTTTTTTCEEEEETTT--TEEEEEES
T ss_pred             ECCceECCCCCEEEEEEEcCCCCcCCcCccceeCCCcceeeeeecCcccccccccccceeeEEEeecCCC--cEEEEeee
Confidence            33456789999999999998654  345687621   110    010           123333332222  23489999


Q ss_pred             ecCCCCCeEEEEEEee
Q psy15734        242 SILSHQFGSYRCVAVN  257 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~n  257 (314)
                      +++.+|++.|.|....
T Consensus        85 ~L~~eDTA~YYCAR~~  100 (124)
T d2b1hh1          85 SLKPSDTALYYCARLG  100 (124)
T ss_dssp             SCCGGGCEEEEEEEEE
T ss_pred             ccccccceEEEEeecC
Confidence            9999999999995433

>d1bz7b1 b.1.1.1 (B:1-122) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.2 [TaxId: 10090]

Probab=97.56  E-value=0.00023  Score=46.94  Aligned_cols=72  Identities=18%  Similarity=0.159  Sum_probs=46.1

Q ss_pred             cceeecCccEEEEEEEeecCC--ceeEEecCC---Ceee---e--c----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        184 LEGAFVSQTVELHCHTEAFPA--SLNYWTNEK---GDMI---I--T----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~---~~~~---~--~----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ...+++|+++.|.|.++|..-  -.+.|++..   +...   +  .          ..++.++.+...  ....|.|.++
T Consensus         9 ~~lvkPg~sl~LsC~~SG~s~s~y~~~WvRQ~PGkglewl~~i~~~~~~~~Y~~s~kgRftiSrD~s~--~t~yL~m~sL   86 (122)
T d1bz7b1           9 GGLVQPGGSRKLSCAASGFTFSNFGMHWVRQAPEKGLEWVAYISSGGSSINYADTVKGRFTISRDNPK--NTLFLQMTSL   86 (122)
T ss_dssp             CEEECTTCCEEEEEEEESSCGGGSCEEEEEECSSSCEEEEEEECSSSSCEEECGGGTTTEEEEEEGGG--TEEEEEECSC
T ss_pred             CceECCCCCeEEEEEEcCCCCcCCceEccccCCCcceeeeeecCcccccccccceeeeeEEEeccCCc--cEeEeeeeee
Confidence            345789999999999998653  355787621   1100   0  1          123333332222  2347999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (122)
T d1bz7b1          87 RSEDTAIYYCTRGG  100 (122)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             cccCceEEEeecCC
Confidence            99999999997644

>d1rz7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.56  E-value=0.00025  Score=46.54  Aligned_cols=87  Identities=22%  Similarity=0.315  Sum_probs=49.7

Q ss_pred             ceeEEecCceEEEEEEecccC--CCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEe
Q psy15734        133 TDVVVREGTEVTLECSAVGYP--EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWT  210 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~  210 (314)
                      ....+.+|++++|.|.+.|+.  .-.+.|++.                         .+|..+...=.+.          
T Consensus         8 g~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ-------------------------~PGkglewv~~i~----------   52 (119)
T d1rz7h1           8 GAEVKKPGATVKISCKASGYTFSDFYMYWVRQ-------------------------APGKGLEWMGLID----------   52 (119)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSCEEEEEE-------------------------CTTSCEEEEEEEE----------
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCceEcccc-------------------------CCccceeeeeecC----------
Confidence            345677899999999988764  346888872                         1222222211110          


Q ss_pred             cCCCeee-e--cCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        211 NEKGDMI-I--TGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       211 ~~~~~~~-~--~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      .+++... .  -..++.++.+....  ...|.|.+++.+|++.|.|...
T Consensus        53 ~~~~~~~ya~s~kgRftiSrD~s~n--t~yLqm~sL~~eDTAvYYCAr~   99 (119)
T d1rz7h1          53 PEDADTMYAEKFRGRVTITADTSTD--TGYLELSSLRSEDTAVYYCAAD   99 (119)
T ss_dssp             TTTTEEEECTTTTTTEEEEEETTTT--EEEEEECSCCGGGCEEEEEEEC
T ss_pred             CcccccccccceeeeEEEecccCce--EEEeeeeccCcccceEEEEeec
Confidence            1111111 0  12344444433322  2389999999999999999654

>d3cx5j1 b.1.1.1 (J:1-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 7.1 [TaxId: 10090]

Probab=97.56  E-value=0.00022  Score=47.26  Aligned_cols=71  Identities=20%  Similarity=0.301  Sum_probs=45.7

Q ss_pred             ceeecCccEEEEEEEeecCC---ceeEEecCC-Cee------eec----------CCceeeeEeeCCeeeEEEEEEeecC
Q psy15734        185 EGAFVSQTVELHCHTEAFPA---SLNYWTNEK-GDM------IIT----------GDDYEDSRLINGYSCHMTLKIRSIL  244 (314)
Q Consensus       185 ~~v~~g~~~~l~C~~~g~p~---p~~~W~~~~-~~~------~~~----------~~~~~~~~~~~~~~~~s~L~i~~~~  244 (314)
                      ..+++|+++.|.|.+.|..-   -.+.|++.. ++.      +..          ..++.++.+...  ....|.|.+++
T Consensus        10 ~lvkPg~sl~LsC~~SG~s~~s~y~~~WvRQ~PGkglewl~~i~~~g~~~y~~s~kgR~tis~d~s~--nt~yL~l~~l~   87 (127)
T d3cx5j1          10 GLVQPSQSLSLTCSVTGYSITSGYYWNWIRLFPGNKLEWVGYISNVGDNNYNPSLKDRLSITRDTSK--NQFFLKLNSVT   87 (127)
T ss_dssp             SEECTTSCEEEEEEEESSCTTTSSEEEEEEEETTTEEEEEEEEETTSCEEECTTTTTTBCCEEETTT--TEEEEEECSCC
T ss_pred             ceECCCCCEEEEEEEecccccCCCcceeeeECCCcchheeeeecccccchhcccccccceeeccccc--ceeecceeccc
Confidence            45789999999999998653   356787621 110      001          123333332222  23489999999


Q ss_pred             CCCCeEEEEEEee
Q psy15734        245 SHQFGSYRCVAVN  257 (314)
Q Consensus       245 ~~d~G~Y~C~a~n  257 (314)
                      .+|.+.|.|....
T Consensus        88 ~eDtAvYyCAr~~  100 (127)
T d3cx5j1          88 TEDTATYYCARSE  100 (127)
T ss_dssp             GGGCEEEEEEEEE
T ss_pred             cccceEEEeeeec
Confidence            9999999997543

>d1sjva_ b.1.1.1 (A:) Camelid IG heavy chain variable domain, VHh {Llama (Lama glama) [TaxId: 9844]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Llama (Lama glama) [TaxId: 9844]

Probab=97.55  E-value=0.00015  Score=46.54  Aligned_cols=20  Identities=20%  Similarity=0.433  Sum_probs=18.2

Q ss_pred             EEEEEeecCCCCCeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..|.|.+++.+|++.|.|..
T Consensus        71 ~~L~i~~l~~eDtAvYyCA~   90 (107)
T d1sjva_          71 VYLEMNSLEPEDTAVYYCYT   90 (107)
T ss_dssp             EEEEECSCCGGGCSEEEEEE
T ss_pred             EEEeecCCCcccceeeeEec
Confidence            48999999999999999964

>d1lmka1 b.1.1.1 (A:2-127) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.55  E-value=0.00012  Score=48.47  Aligned_cols=73  Identities=14%  Similarity=0.188  Sum_probs=46.8

Q ss_pred             CCcceeecCccEEEEEEEeecCCc--eeEEecCCC-ee------ee-c----------CCceeeeEeeCCeeeEEEEEEe
Q psy15734        182 NQLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKG-DM------II-T----------GDDYEDSRLINGYSCHMTLKIR  241 (314)
Q Consensus       182 ~~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~-~~------~~-~----------~~~~~~~~~~~~~~~~s~L~i~  241 (314)
                      +....+++|+++.|.|.+.|..-.  .+.|.+... +-      +. .          ..++.++.+...  ....|.|.
T Consensus         6 sG~~~~kPg~sl~LsC~~SG~~~~~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRfTiS~D~s~--nt~yL~m~   83 (126)
T d1lmka1           6 SGTELMKPGRSLKISCKTTGYIFSNYWIEWVKQRPGHGLEWIGKILPGGGSNTYNDKFKGKATFTADTSS--NIAYMQLS   83 (126)
T ss_dssp             CCCEEECTTCCEEEEEEEESSCTTTEEEEEEEECTTSCEEEEEEEETTTTEEEECGGGTTTEEEEEETTT--TEEEEEEC
T ss_pred             ECCceECCCCCeEEEEEEccCCCCCCCCcceeeCCCccceeeeecCccccchhhhhhhccceEEEecCCc--cEEEeeec
Confidence            344568899999999999996543  456876211 00      11 1          123334332222  23589999


Q ss_pred             ecCCCCCeEEEEEEe
Q psy15734        242 SILSHQFGSYRCVAV  256 (314)
Q Consensus       242 ~~~~~d~G~Y~C~a~  256 (314)
                      +++.+|.+.|.|...
T Consensus        84 ~L~~eDTAvYYCAr~   98 (126)
T d1lmka1          84 SLTSEDSAVYYCARG   98 (126)
T ss_dssp             SCCGGGCEEEEEEEE
T ss_pred             ccCCCcceEEEEeec
Confidence            999999999999643

>d1dlfh_ b.1.1.1 (H:) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.54  E-value=0.00026  Score=46.38  Aligned_cols=73  Identities=15%  Similarity=0.209  Sum_probs=45.9

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC-ee-------eec------------CCceeeeEeeCCeeeEEEEEE
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG-DM-------IIT------------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~-~~-------~~~------------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++... +-       ...            ..++.++.....  ....|.|
T Consensus         8 G~~~vkpG~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglEwv~~i~~~~~~~~~~ya~s~kgRftiS~D~s~--n~~~L~~   85 (120)
T d1dlfh_           8 GGGLVQPGGSMKLSCATSGFTFSDAWMDWVRQSPEKGLEWVAEIRNKANNHATYYAESVKGRFTISRDDSK--RRVYLQM   85 (120)
T ss_dssp             CCCEECTTCCEEEEEEEESSCTTTCEEEEEEEETTTEEEEEEEECCGGGTTCEEECTTTTTTEEEEEETTT--TEEEEEE
T ss_pred             CCceECCCCCeEEEEEECCccCcCCceEeeeeCCCcceeeeeeccccccccceeechhceecceeeccccc--ceeccce
Confidence            3446889999999999998643  4556876321 10       000            013333332222  2348999


Q ss_pred             eecCCCCCeEEEEEEee
Q psy15734        241 RSILSHQFGSYRCVAVN  257 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n  257 (314)
                      .+++.+|++.|.|....
T Consensus        86 ~~L~~eDtAvYYCA~~~  102 (120)
T d1dlfh_          86 NTLRAEDTGIYYCTGIY  102 (120)
T ss_dssp             CSCCGGGCEEEEEEEEB
T ss_pred             eeccCCCceEEEeeEec
Confidence            99999999999996543

>d1xiwa_ b.1.1.4 (A:) CD3 epsilon chain ectodomain fragment {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.54  E-value=6.3e-05  Score=45.61  Aligned_cols=77  Identities=18%  Similarity=0.311  Sum_probs=47.5

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC-CCCeEEEEEEeeCC-CCceeE
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS-HQFGSYRCVAVNAL-GETDGF  265 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~-g~~~~~  265 (314)
                      ..|.+|.|+|.-  .+...+.|.+++..+....+...+ .....     .|.+.+... +++|.|.|.+.... ......
T Consensus         8 ISGTtV~LTCP~--~~~~~i~W~~n~~~~~~~~~~~~~-~~~~~-----~l~L~dfSe~e~sGyY~C~~~~~~~~~~~~~   79 (91)
T d1xiwa_           8 ISGTTVILTCPQ--YPGSEILWQHNDKNIGGDEDDKNI-GSDED-----HLSLKEFSELEQSGYYVCYPRGSKPEDANFY   79 (91)
T ss_dssp             EETTEEEEECSS--CTTSCEEEEETTEEESSSCSCTTE-EEETT-----EEEETTCCHHHHCEEEEEEETTSCGGGCCEE
T ss_pred             EeCCEEEEECCC--CCCCceeeeeccccccCCCccccc-ccccc-----eEEecccCccccCceEEEEcCCCCCCCcceE
Confidence            469999999963  355779999975433322221111 12222     788888776 79999999985432 233445


Q ss_pred             EEEEEEe
Q psy15734        266 IKVYVNL  272 (314)
Q Consensus       266 ~~l~V~~  272 (314)
                      +.|++++
T Consensus        80 LYLKARV   86 (91)
T d1xiwa_          80 LYLRARV   86 (91)
T ss_dssp             EEEEECC
T ss_pred             EEEEeEe
Confidence            6666544

>d1fn4b1 b.1.1.1 (B:1-106) Immunoglobulin heavy chain variable domain, VH {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.54  E-value=0.00023  Score=46.52  Aligned_cols=23  Identities=26%  Similarity=0.440  Sum_probs=19.4

Q ss_pred             EEEEEeecCCCCCeEEEEEEeeC
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVNA  258 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n~  258 (314)
                      ..|.|.+++.+|++.|.|.....
T Consensus        78 v~L~~~~L~~eDTAvYyCAr~~~  100 (116)
T d1fn4b1          78 VFLKMNSLQTDDTGTYYCTRDLY  100 (116)
T ss_dssp             EECCEESCCCCCCEEEEEEEECS
T ss_pred             hhcceeccCCCCCEEEEEEeecC
Confidence            47999999999999999965443

>d1vgeh1 b.1.1.1 (H:1-122) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.51  E-value=0.0004  Score=45.61  Aligned_cols=22  Identities=14%  Similarity=0.255  Sum_probs=19.0

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        80 vyL~~~~L~~eDtA~YYCAr~~  101 (122)
T d1vgeh1          80 AYMGLSSLRPEDTAVYYCARDP  101 (122)
T ss_dssp             EEEEECSCCGGGCEEEEEEEET
T ss_pred             eeecccccCCCcceEEEEeecC
Confidence            3799999999999999996643

>d2fb4h1 b.1.1.1 (H:1-119) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 3 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 3 [TaxId: 9606]

Probab=97.51  E-value=0.00022  Score=47.37  Aligned_cols=74  Identities=18%  Similarity=0.234  Sum_probs=46.7

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC---ee----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-  -.+.|++...   ..    +. .          ..++.++.+...  ....|.|.+
T Consensus         8 G~~~~kpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEw~~~i~~~~~~~~y~~~~kgR~Tis~D~s~--~t~yL~~~~   85 (127)
T d2fb4h1           8 GGGVVQPGRSLRLSCSSSGFIFSSYAMYWVRQAPGKGLEWVAIIWDDGSDQHYADSVKGRFTISRNDSK--NTLFLQMDS   85 (127)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECTTSSCEEECGGGBTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCeEEEEEECCCCccCCceeeeecCCCcceeeeeecccccccchhcccccceEEEeccCCc--cEEEeeeee
Confidence            3446789999999999998543  3556765321   00    00 1          123333332222  234899999


Q ss_pred             cCCCCCeEEEEEEeeC
Q psy15734        243 ILSHQFGSYRCVAVNA  258 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~  258 (314)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDTA~YYCAr~~~  101 (127)
T d2fb4h1          86 LRPEDTGVYFCARDGG  101 (127)
T ss_dssp             CCGGGCEEEEEEEECS
T ss_pred             eeecceeEEEEEEecC
Confidence            9999999999976543

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.50  E-value=0.00021  Score=45.90  Aligned_cols=67  Identities=21%  Similarity=0.418  Sum_probs=39.6

Q ss_pred             EcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         34 TVGKEALMACVVENL--REYKVAWVKMITQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..|+.++|.|.+.+.  ....+.|.+++ ..+......  ....++.+.+         .....+..+|.+.|+|.+.+.
T Consensus        17 ~~~~~~tL~C~~~gFyP~~i~v~W~~ng-~~v~~~~~~~~~~~~dgty~~---------~s~l~v~~~~~~~ytC~V~H~   86 (100)
T d1k5nb_          17 ENGKSNFLNCYVSGFHPSDIEVDLLKNG-ERIEKVEHSDLSFSKDWSFYL---------LYYTEFTPTEKDEYACRVNHV   86 (100)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETT-EECTTCEECCCEECTTSCEEE---------EEEEEECCCSSCCEEEEEECT
T ss_pred             cCCCCEEEEEEECccCCCCcEEEEEECC-EecCCccccceecCCCCcEEE---------EEEeEECCCCCCEEEEEEEeC
Confidence            568899999999884  34689999954 433211111  1122222222         222334456777999999765


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        87 s   87 (100)
T d1k5nb_          87 T   87 (100)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.50  E-value=0.0002  Score=46.03  Aligned_cols=67  Identities=15%  Similarity=0.267  Sum_probs=38.8

Q ss_pred             EcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeee--eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         34 TVGKEALMACVVENL--REYKVAWVKMITQTILSIHH--KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..|+.++|.|.+.+.  ....|.|.+++ ..+.....  .....++.+....      .|.   +..++.+.|+|.+.+.
T Consensus        16 ~~~~~~tL~C~v~gf~P~~i~V~W~~~g-~~~~~~~~~~~~~~~dgtf~~~s------~l~---v~~~~~~~ytC~V~H~   85 (99)
T d1lk2b_          16 ENGKPNILNCYVTQFHPPHIEIQMLKNG-KKIPKVEMSDMSFSKDWSFYILA------HTE---FTPTETDTYACRVKHD   85 (99)
T ss_dssp             CTTSCEEEEEEEEEEBSSCCEEEEEETT-EECTTCEEEEEEECTTCCEEEEE------EEE---ECCCSSCCEEEEEECT
T ss_pred             cCCCcEEEEEEEEEEECCCcEEEEeeCC-eecCCcEECceeECCCCCEEEEE------EeE---ecCcCCCEEEEEEEeC
Confidence            467889999999884  34789999954 33211110  1112222222211      344   4456777899999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        86 s   86 (99)
T d1lk2b_          86 S   86 (99)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1ad9b1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.50  E-value=0.00013  Score=47.77  Aligned_cols=72  Identities=13%  Similarity=0.166  Sum_probs=46.2

Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCCC-e-e-----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKG-D-M-----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~-~-~-----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-.  .+.|.+... + +     +. .          ..++.++.....  ....|.|.+
T Consensus         8 g~~~vkpg~sl~LsC~vSG~s~~~~~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgRftiS~D~s~--nt~~L~m~~   85 (120)
T d1ad9b1           8 GAEVKKPGSSVKVSCKASGYTFTDYYINWMRQAPGQGLEWIGWIDPGSGNTKYNEKFKGRATLTVDTST--NTAYMELSS   85 (120)
T ss_dssp             CCEEECTTCCEEEEEEEESSCGGGSEEEEEEECTTSCEEEEEEEETTTTEEEECGGGBTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccccceECCCccceeeeecCCcccceeeccceeeeEEEEecCcc--eEEeccccc
Confidence            44568899999999999986543  556875321 0 0     00 1          123333332222  234899999


Q ss_pred             cCCCCCeEEEEEEe
Q psy15734        243 ILSHQFGSYRCVAV  256 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~  256 (314)
                      ++.+|.+.|.|...
T Consensus        86 L~~eDTAvYYCAr~   99 (120)
T d1ad9b1          86 LRSEDTAFYFCARE   99 (120)
T ss_dssp             CCGGGCEEEEEEEE
T ss_pred             cCCCcceEEEEEEc
Confidence            99999999999653

>d1op3h1 b.1.1.1 (H:1-115) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.50  E-value=0.00024  Score=46.91  Aligned_cols=72  Identities=15%  Similarity=0.136  Sum_probs=46.2

Q ss_pred             cceeecCccEEEEEEEeecC--CceeEEecCCC---ee----e-ec----------CCceeeeEeeCCeeeEEEEEEeec
Q psy15734        184 LEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG---DM----I-IT----------GDDYEDSRLINGYSCHMTLKIRSI  243 (314)
Q Consensus       184 ~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~---~~----~-~~----------~~~~~~~~~~~~~~~~s~L~i~~~  243 (314)
                      ...+++|+++.|.|.++|..  .-.+.|++...   ..    + ..          ..++.++.+...  ....|.|.++
T Consensus         9 ~~lvkpg~sl~LsC~~SG~~~~~~~~~WvRQ~PGkglEwv~~i~~~~~~~~Y~~s~kgRftiSrD~s~--~t~~Lqm~sL   86 (125)
T d1op3h1           9 GGLVKAGGSLILSCGVSNFRISAHTMNWVRRVPGGGLEWVASISTSSTYRDYADAVKGRFTVSRDDLE--DFVYLQMHKM   86 (125)
T ss_dssp             CEEEETTCCEEEEEEEESSCGGGSCEEEEEECTTSCEEEEEEECGGGCCEEECTTTTTTEEEEEETTT--TEEEEEECSC
T ss_pred             CceECCCCCeEEEEeECCccCcCcccCccccCCCcceeeeeecCccccccccccccccceEEeccCcc--ceEeeeeecc
Confidence            34688999999999999854  33567876321   10    0 01          123333332222  2348999999


Q ss_pred             CCCCCeEEEEEEee
Q psy15734        244 LSHQFGSYRCVAVN  257 (314)
Q Consensus       244 ~~~d~G~Y~C~a~n  257 (314)
                      +.+|++.|.|....
T Consensus        87 ~~eDTAvYYCAr~~  100 (125)
T d1op3h1          87 RVEDTAIYYCARKG  100 (125)
T ss_dssp             CGGGCEEEEEEEEC
T ss_pred             CCccceeEeEeecc
Confidence            99999999997643

>d1rzfh1 b.1.1.1 (H:2-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00021  Score=47.67  Aligned_cols=75  Identities=16%  Similarity=0.166  Sum_probs=47.4

Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCCC---ee----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEKG---DM----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~~---~~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..-.  .+.|.+...   ..    +. .          ..++.++.+...  ....|.|.+
T Consensus         7 G~~~vkPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglEwvg~i~~~~~~~~y~~s~kgR~tis~D~s~--~t~~L~~~~   84 (133)
T d1rzfh1           7 GAEVNKPGSSVKVSCQASGATLNSHAFSWVRQAPGQGLEWMAGIIPIFGSSHYAQKFRGRVTISADEST--RTVYLHLRG   84 (133)
T ss_dssp             CCEEECTTCCEEEEEEESSSCSTTEEEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCCCccceECCCCceEEEeecCCccccccccccccccEEEEeccCc--ceeEEeecc
Confidence            34568999999999999986543  456776211   00    00 0          123333332222  234899999


Q ss_pred             cCCCCCeEEEEEEeeCC
Q psy15734        243 ILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~~  259 (314)
                      ++.+|++.|.|......
T Consensus        85 L~~eDtA~YYCAr~~~~  101 (133)
T d1rzfh1          85 LRSDDTAVYYCASNSIA  101 (133)
T ss_dssp             CCGGGCEEEEEEEEECC
T ss_pred             CCCCCCEEEEeeeccCC
Confidence            99999999999665443

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=97.49  E-value=0.00027  Score=44.87  Aligned_cols=66  Identities=11%  Similarity=0.178  Sum_probs=39.9

Q ss_pred             CccEEEEEEEeecCCc--eeEEecCCCeeeecCCce--eeeEeeC-CeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        190 SQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDY--EDSRLIN-GYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       190 g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~--~~~~~~~-~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      +..++|.|.+.|+-+.  .+.|++++.. .......  ......+ .|...+.|.+..   +|...|+|++....
T Consensus        15 ~~~~~L~C~~~gFyP~~i~v~W~~~g~~-~~~~~~~~~~~~~~~~~ty~~~s~l~v~~---~~~~~ytC~V~H~~   85 (94)
T d1hyrc1          15 EGNITVTCRASGFYPWNITLSWRQDGVS-LSHDTQQWGDVLPDGNGTYQTWVATRICQ---GEEQRFTCYMEHSG   85 (94)
T ss_dssp             SSEEEEEEEEEEEBSSCCEEEEEETTEE-CCSTTSEECCCEECSSSCEEEEEEEEEET---TCGGGEEEEEEETT
T ss_pred             CCCEEEEEEEEEEECCCcEEEEeECCeE-cCCCeEEcCceEECCCCcEEEEEEEEEcC---CCCCEEEEEEEECC
Confidence            4578999999996443  6679997443 3222211  1112223 366667777664   33347999998754

>d1rzga1 b.1.1.1 (A:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.49  E-value=0.00011  Score=48.95  Aligned_cols=73  Identities=12%  Similarity=0.141  Sum_probs=46.2

Q ss_pred             CcceeecCccEEEEEEEeecC--CceeEEecCCC-e--e----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFP--ASLNYWTNEKG-D--M----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p--~p~~~W~~~~~-~--~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|.|.++|..  .-.+.|++... +  .    +. .          ..++.++.+...  ....|.|.+
T Consensus         8 g~~~~kPg~sl~LsC~~SG~~~s~y~~~WvRQ~PGkglewv~~i~~~~~~~~y~~s~kgR~tiS~D~s~--~t~yL~~~s   85 (130)
T d1rzga1           8 GAEVKKPGSSVKVSCKASGGTFSNYAINWVRQAPGQGLEWMGGIIPIFNIAHYAQRFQGRVSITADEST--STAYMELSS   85 (130)
T ss_dssp             CCEEECTTCCEEEEEECCSSCGGGCCEEEEEECTTCCCEEEEEEETTTTEEEECGGGBTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCceEccccCCCcceeeeeeccccccccccccccccceEEeccccc--ceEEeeeee
Confidence            345688999999999999864  34567876321 0  0    11 1          122333332222  234799999


Q ss_pred             cCCCCCeEEEEEEee
Q psy15734        243 ILSHQFGSYRCVAVN  257 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n  257 (314)
                      ++.+|++.|.|....
T Consensus        86 L~~eDtA~YYCAr~~  100 (130)
T d1rzga1          86 LRSEDTAVFYCASPY  100 (130)
T ss_dssp             CCGGGCEEEEEEECC
T ss_pred             cCCCccEEEEEEEec
Confidence            999999999997543

>d2fx7h1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 1 [TaxId: 9606]

Probab=97.48  E-value=0.00025  Score=47.01  Aligned_cols=74  Identities=12%  Similarity=0.110  Sum_probs=47.0

Q ss_pred             CcceeecCccEEEEEEEeecCC--ceeEEecCCC---ee----ee-c----------CCceeeeEeeCCeeeEEEEEEee
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPA--SLNYWTNEKG---DM----II-T----------GDDYEDSRLINGYSCHMTLKIRS  242 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~--p~~~W~~~~~---~~----~~-~----------~~~~~~~~~~~~~~~~s~L~i~~  242 (314)
                      ....+++|+++.|+|.++|..-  -.+.|.+...   ..    +. .          ..++.++.+...  ....|.|.+
T Consensus         8 g~~~~kPg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglew~g~i~~~~~~~~y~~s~kgR~tiSrD~s~--~t~yL~~~s   85 (127)
T d2fx7h1           8 GAEVKRPGSSVTVSCKASGGSFSTYALSWVRQAPGRGLEWMGGVIPLLTITNYAPRFQGRITITADRST--STAYLELNS   85 (127)
T ss_dssp             CCEEECTTCCEEEEEEEESSCSTTSCEEEEEECTTCCEEEEEEEEGGGTEEEECGGGTTTEEEEEETTT--TEEEEEECS
T ss_pred             CCceECCCCCEEEEEEEcCCCCCCCCeEEEEeCCCCcceeeeccCcccccccccceeeeeEEEeccCcc--ceEeeeecc
Confidence            3456789999999999998543  3567875221   10    00 1          123333332222  234899999


Q ss_pred             cCCCCCeEEEEEEeeC
Q psy15734        243 ILSHQFGSYRCVAVNA  258 (314)
Q Consensus       243 ~~~~d~G~Y~C~a~n~  258 (314)
                      ++.+|++.|.|.....
T Consensus        86 L~~eDTavYYCAR~~~  101 (127)
T d2fx7h1          86 LRPEDTAVYYCAREGT  101 (127)
T ss_dssp             CCGGGCEEEEEEEEEE
T ss_pred             cCcccceEEEEeeccc
Confidence            9999999999976543

>d1lo4h1 b.1.1.1 (H:1-118) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 2.1 [TaxId: 10090]

Probab=97.48  E-value=0.00099  Score=43.41  Aligned_cols=88  Identities=20%  Similarity=0.281  Sum_probs=49.7

Q ss_pred             eeEEecCceEEEEEEecccC--CCceEEEcCCCceeecCCeeCCCeEEcCCCcceeecCccEEEEEEEeecCCceeEEec
Q psy15734        134 DVVVREGTEVTLECSAVGYP--EPYVAWRREDGKAINYNGELVPPMLTIPNQLEGAFVSQTVELHCHTEAFPASLNYWTN  211 (314)
Q Consensus       134 ~~~~~~g~~~~l~C~~~~~p--~p~~~W~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~~~W~~  211 (314)
                      ...+.+|++++|.|.+.|+.  .-.+.|++.                         .+|..+.+.......-   ..-+.
T Consensus         9 ~~~vkPG~Sl~LsC~~SG~~~~~y~~~WvRQ-------------------------~PGkglEwl~~i~~~g---~t~y~   60 (118)
T d1lo4h1           9 GDLVKPGGSLTLSCEASGFTLRTYGMSWVRQ-------------------------TPQMRLEWVASISYGG---LLYFS   60 (118)
T ss_dssp             CCEECTTCCEEEEEEEESSCTTTSEEEEEEE-------------------------CTTCCEEEEEEECTTC---CEEEC
T ss_pred             CceECCCCCeEEEEEECCCcccCCCcccccC-------------------------CCCcceeeeeeccccc---chhhc
Confidence            34577899999999988763  346888872                         2333333332221100   00010


Q ss_pred             CCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEe
Q psy15734        212 EKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       212 ~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      +     .-..++.++.+...  ....|.|.+++.+|++.|.|...
T Consensus        61 ~-----s~kgR~tiSrD~s~--nt~~L~i~~l~~eDtA~YyCAr~   98 (118)
T d1lo4h1          61 D-----SVKGRFTISRDIVR--NILTLQMSRLRSEDTAIYYCARG   98 (118)
T ss_dssp             T-----TTBTTBEEEEETTT--TEEEEEECSCCGGGCEEEEEEEE
T ss_pred             c-----ccceeEEEeccccc--eeeeeccccccCCcceEEEeccc
Confidence            0     01123444432222  23489999999999999999654

>d1q9rb1 b.1.1.1 (B:1-111) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 1 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 1 [TaxId: 10090]

Probab=97.47  E-value=0.00024  Score=46.79  Aligned_cols=73  Identities=16%  Similarity=0.266  Sum_probs=46.8

Q ss_pred             CcceeecCccEEEEEEEeecCCc--eeEEecCC-Ce--ee---e--c------------CCceeeeEeeCCeeeEEEEEE
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPAS--LNYWTNEK-GD--MI---I--T------------GDDYEDSRLINGYSCHMTLKI  240 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p--~~~W~~~~-~~--~~---~--~------------~~~~~~~~~~~~~~~~s~L~i  240 (314)
                      ....+++|+++.|.|.++|..-.  .+.|++.. ++  ..   +  .            ..++.++.+...  ....|.|
T Consensus         8 g~~~vkpg~sl~LsC~~SG~s~~~y~~~WvRQ~PGkglewv~~i~~~~~~~~~~Y~~s~kgRftiSrD~s~--nt~~L~~   85 (122)
T d1q9rb1           8 GGGLVQSGGSLRLSCATSGFTFTDYYMSWVRQPPGKALEWLGFIRNKANGYTTEYSPSVKGRFTISRDNSQ--SILYLQM   85 (122)
T ss_dssp             CCCEECTTCCEEEEEEEESSCGGGSCEEEEEECTTSCCEEEEEECCGGGTTCEEECTTTBTTEEEEEETTT--TEEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCCcCCccCccccCCCcceeeeeeccccccCCcchhchheeecceeeeeccc--ceeccce
Confidence            34468899999999999986543  56687532 11  00   0  0            123333332222  2347999


Q ss_pred             eecCCCCCeEEEEEEee
Q psy15734        241 RSILSHQFGSYRCVAVN  257 (314)
Q Consensus       241 ~~~~~~d~G~Y~C~a~n  257 (314)
                      .+++.+|++.|.|....
T Consensus        86 ~sL~~eDTAvYYCar~~  102 (122)
T d1q9rb1          86 NTLRAEDSATYYCARDH  102 (122)
T ss_dssp             CSCCGGGCEEEEEEECC
T ss_pred             eeeccCcceEEEEEecC
Confidence            99999999999997644

>d1rihh1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.46  E-value=0.00026  Score=46.97  Aligned_cols=22  Identities=18%  Similarity=0.317  Sum_probs=19.1

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        79 vyL~l~sL~~eDtAvYYCAR~~  100 (125)
T d1rihh1          79 AFMYLNSLTSEDSAVYYCARES  100 (125)
T ss_dssp             EEEEECSCCGGGCEEEEEEEEC
T ss_pred             EeeeeeccCcccceEEEEeeeC
Confidence            4899999999999999997543

>d1ol0a_ b.1.1.1 (A:) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.45  E-value=0.00047  Score=45.34  Aligned_cols=22  Identities=18%  Similarity=0.394  Sum_probs=19.2

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|.+++.+|++.|.|....
T Consensus        79 ~~L~i~sL~~eDtAvYYCAr~~  100 (121)
T d1ol0a_          79 LYLQMNSLRAEDTAVYYCAREP  100 (121)
T ss_dssp             EEEEECSCCGGGCEEEEEEECC
T ss_pred             EEeeeeecccccceEEEEEEec
Confidence            4899999999999999997543

>d2p49b1 b.1.1.1 (B:1-121) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.44  E-value=0.00056  Score=44.86  Aligned_cols=21  Identities=24%  Similarity=0.453  Sum_probs=18.7

Q ss_pred             EEEEEeecCCCCCeEEEEEEe
Q psy15734        236 MTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ..|.|.+++.+|++.|.|...
T Consensus        79 ~yLq~~~L~~eDtAvYYCAr~   99 (121)
T d2p49b1          79 VYLQMDSLKPEDTATYYCAAG   99 (121)
T ss_dssp             EEEEECSCCGGGCEEEEEEES
T ss_pred             EEEEeeeccccceeEEeeecc
Confidence            489999999999999999753

>d1rjca1 b.1.1.1 (A:2-127) Camelid IG heavy chain variable domain, VHh {Camel (Camelus dromedarius) [TaxId: 9838]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Camelid IG heavy chain variable domain, VHh
species: Camel (Camelus dromedarius) [TaxId: 9838]

Probab=97.42  E-value=0.00094  Score=44.22  Aligned_cols=22  Identities=23%  Similarity=0.430  Sum_probs=19.2

Q ss_pred             EEEEEeecCCCCCeEEEEEEee
Q psy15734        236 MTLKIRSILSHQFGSYRCVAVN  257 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~n  257 (314)
                      ..|.|++++.+|++.|.|....
T Consensus        78 ~~L~i~~l~~eDTAvYYCAr~~   99 (126)
T d1rjca1          78 LYLQMNSLKPEDTAMYYCAADT   99 (126)
T ss_dssp             EEEEECSCCGGGCEEEEEEECC
T ss_pred             EEEEEeccCcccCceeEEEeec
Confidence            4799999999999999997643

>d1fltx_ b.1.1.4 (X:) Second domain of the Flt-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Second domain of the Flt-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.42  E-value=0.00044  Score=43.66  Aligned_cols=77  Identities=12%  Similarity=0.036  Sum_probs=51.8

Q ss_pred             CcceeecCccEEEEEEEeecCCceeE-EecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCCCC
Q psy15734        183 QLEGAFVSQTVELHCHTEAFPASLNY-WTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNALGE  261 (314)
Q Consensus       183 ~~~~v~~g~~~~l~C~~~g~p~p~~~-W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~  261 (314)
                      ..+.+.+|+++.+.|.++ +|...+. |..+++......  ..++.....     =+.|.++...|.|.|.|.|... |.
T Consensus        13 ~~V~v~eg~~~vIPC~vT-~P~~~VtL~~~~~~~~~p~g--~~v~~Dpk~-----Gf~I~~~~~~~~g~y~C~a~~~-g~   83 (95)
T d1fltx_          13 EIIHMTEGRELVIPCRVT-SPNITVTLKKFPLDTLIPDG--KRIIWDSRK-----GFIISNATYKEIGLLTCEATVN-GH   83 (95)
T ss_dssp             EEEEECTTSCEEECCCBS-CTTSCCEEEETTTEEECCCS--SSEEEETTT-----EEEESSCCGGGCEEEEEEEEET-TE
T ss_pred             CEEEEeCCCCEEEEccCC-CCCceeEEEeccCCccCCCC--CEEEECCCC-----CEEEeCCCcccCeEEEEEEEEC-CE
Confidence            345688999999999998 5666665 655544333222  233333343     6889999999999999999765 44


Q ss_pred             ceeEEEE
Q psy15734        262 TDGFIKV  268 (314)
Q Consensus       262 ~~~~~~l  268 (314)
                      ...+..|
T Consensus        84 ~~~S~yl   90 (95)
T d1fltx_          84 LYKTNYL   90 (95)
T ss_dssp             EEEEEEE
T ss_pred             EEEEEEE
Confidence            4445444

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00073  Score=42.88  Aligned_cols=66  Identities=15%  Similarity=0.276  Sum_probs=40.9

Q ss_pred             cCCcEEEEEEecC-CCceEEEEEEcCceeEEEeeeeeee--cCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         35 VGKEALMACVVEN-LREYKVAWVKMITQTILSIHHKVVT--QNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        35 ~g~~~~l~C~~~~-~~~~~v~W~~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      .|+.++|.|.+.+ +|.+.|.|++++ ..+.........  .++.+.+..      .|.+.   ..+...|+|.+.+.+
T Consensus        15 s~~~~~L~C~~~g~~P~~~V~W~~n~-~~~~~~~~~~~~~~~~g~y~v~S------~L~v~---~~~~~~~tC~V~h~~   83 (95)
T d1dr9a2          15 TSNIRRIICSTSGGFPEPHLSWLENG-EELNAINTTVSQDPETELYAVSS------KLDFN---MTTNHSFMCLIKYGH   83 (95)
T ss_dssp             STTEEEEEEEEEEESSCEEEEEEESS-CEECCSEEEEEECTTTCCEEEEE------EEEEE---TTSCEEEEEEEEETT
T ss_pred             CCCEEEEEEEECcccCCCEEEEecCC-cEecccceeeEecCCCccEEEEE------EEEcc---CCccceEEEEEEecC
Confidence            4678899999987 688899999954 433222111111  223344332      45553   456789999997654

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.41  E-value=0.00099  Score=42.14  Aligned_cols=66  Identities=15%  Similarity=0.249  Sum_probs=38.9

Q ss_pred             cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeeee--ecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKVV--TQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      .|+.++|.|.+.+. | ...|.|.+++ ..+........  ..++.+.         ......+...|...|+|.+.+.+
T Consensus        14 ~~~~~tL~C~~~gFyP~~i~v~W~~ng-~~~~~~~~~~~~~~~~~t~~---------~~s~l~~~~~~~~~ytC~V~H~s   83 (94)
T d1t7va1          14 PGEKKKLKCLAYDFYPGKIDVHWTRAG-EVQEPELRGDVLHNGNGTYQ---------SWVVVAVPPQDTAPYSCHVQHSS   83 (94)
T ss_dssp             TTSCEEEEEEEEEEBSSCEEEEEEETT-EECCCSEEEEEEETTTTEEE---------EEEEEEECTTCCSCEEEEEEETT
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECC-EECCCcEEeeeecCCCCeEE---------EEEEeEeCCCCCCEEEEEEEECC
Confidence            57899999999884 4 4799999954 33221111111  1111122         23334455677778999997654

>d1c5ch2 b.1.1.2 (H:114-230) Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 1, CH1-gamma
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=0.0003  Score=45.56  Aligned_cols=71  Identities=15%  Similarity=0.200  Sum_probs=45.8

Q ss_pred             cCccEEEEEEEeecCCc--eeEEecCCCeeeecCCceeeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCCCc
Q psy15734        189 VSQTVELHCHTEAFPAS--LNYWTNEKGDMIITGDDYEDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALGET  262 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p--~~~W~~~~~~~~~~~~~~~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g~~  262 (314)
                      .+..++|.|.+.++.+.  .|.|..++.....  ..+......++ |...+.|.|..-... ...|+|.+.+..+..
T Consensus        19 ~~~~~tl~Cl~~~f~P~~i~v~W~~~~~~~~~--~t~~~~~~~~gtys~~S~L~v~~~~w~-~~~ytC~V~H~~~~~   92 (103)
T d1c5ch2          19 SGGTAALGCLVKDYFPEPVTVSWNSGALTSGV--HTFPAVLQSSGLYSLSSVVTVPSSSLG-TQTYICNVNHKPSNT   92 (103)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEGGGTBCTTE--EECCCEECTTSCEEEEEEEEEEGGGGG-TCCCEEEEEEGGGTE
T ss_pred             CCCeEEEEEEEEeEeCCCeEEEECcCCCCCCE--EECCCeECCCCCEEEEEEEEECccccC-CCeEEEEEEeCCCCE
Confidence            46789999999986543  6789775432111  11112223344 788889998876653 457999999876543

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.33  E-value=0.0012  Score=41.38  Aligned_cols=65  Identities=14%  Similarity=0.181  Sum_probs=37.8

Q ss_pred             CCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeee-eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         36 GKEALMACVVENL-R-EYKVAWVKMITQTILSIHHK-VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        36 g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      +..++|.|.+.+. | ...|.|.+++ ..+...... ....++.+.+..      .|.+   ..+|...|+|.+.+.+
T Consensus        15 ~~~~~L~C~~~gF~P~~i~v~W~~ng-~~~~~~~~~~~~~~dgty~~~S------~l~v---~~~~~~~ytC~V~H~s   82 (91)
T d3frua1          15 SGSSVLTCAAFSFYPPELKFRFLRNG-LASGSGNCSTGPNGDGSFHAWS------LLEV---KRGDEHHYQCQVEHEG   82 (91)
T ss_dssp             TTEEEEEEEEEEEBSSCCEEEEEETT-EECCCCEEEEEECSSSCEEEEE------EEEE---ETTCGGGEEEEEECTT
T ss_pred             CCCEEEEEEEEeEECCCCEEEEEECC-EeCCccCccceecCCCCEeEEE------EEEE---CCCCCCEEEEEEEeCC
Confidence            4578999999884 3 4799999955 332211111 112233333322      3544   3466678999997643

>d1jbja2 b.1.1.4 (A:1-100) CD3 epsilon chain ectodomain fragment {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: CD3 epsilon chain ectodomain fragment
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.32  E-value=0.00014  Score=44.69  Aligned_cols=67  Identities=15%  Similarity=0.328  Sum_probs=42.9

Q ss_pred             ecCccEEEEEEEeecCCceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCC-CCCeEEEEEEeeCCCCceeEE
Q psy15734        188 FVSQTVELHCHTEAFPASLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILS-HQFGSYRCVAVNALGETDGFI  266 (314)
Q Consensus       188 ~~g~~~~l~C~~~g~p~p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~-~d~G~Y~C~a~n~~g~~~~~~  266 (314)
                      ..|.+|.|+|...+.  -.+.|.+++..+.....+              .|.+.+... +|+|.|.|...+  +.....+
T Consensus        12 ISGTtV~LTCP~~~~--~~I~Wkkn~~~i~g~~~~--------------~L~L~~FSE~e~SGyY~C~~~~--~~~~~~L   73 (100)
T d1jbja2          12 ISGTSVELTCPLDSD--ENLKWEKNGQELPQKHDK--------------HLVLQDFSEVEDSGYYVCYTPA--SNKNTYL   73 (100)
T ss_dssp             EETTEEEEECSSCCC--TTCEEEETTEEECSCCCS--------------EEEEESCCTTTSCEEEEEECSS--CCCCCCE
T ss_pred             EeCCEEEEECCCCCC--CceEEeeccccCCCCCCc--------------EEEEccccccccCcceEEecCC--CCcceEE
Confidence            469999999997653  469999864332222221              677777654 899999996433  3334455


Q ss_pred             EEEEEe
Q psy15734        267 KVYVNL  272 (314)
Q Consensus       267 ~l~V~~  272 (314)
                      .|..++
T Consensus        74 YLKARV   79 (100)
T d1jbja2          74 YLKARV   79 (100)
T ss_dssp             EECCCC
T ss_pred             EEEEEE
Confidence            554443

>d1yedb1 b.1.1.1 (B:1-113) Immunoglobulin heavy chain variable domain, VH {Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Mouse (Mus musculus), cluster 3.2 [TaxId: 10090]

Probab=97.32  E-value=0.00062  Score=44.74  Aligned_cols=29  Identities=34%  Similarity=0.735  Sum_probs=21.8

Q ss_pred             ceeEEecCceEEEEEEecccC--CCceEEEc
Q psy15734        133 TDVVVREGTEVTLECSAVGYP--EPYVAWRR  161 (314)
Q Consensus       133 ~~~~~~~g~~~~l~C~~~~~p--~p~~~W~~  161 (314)
                      ....+.+|++++|.|.+.|+.  .-.+.|.+
T Consensus         8 G~~~~kPG~sl~LsC~~SG~~~~~y~~~WvR   38 (124)
T d1yedb1           8 GPELVRPGTSVKLSCKTSGYIFTSYWIHWLK   38 (124)
T ss_dssp             CCEEECTTCEEEEEEEEESSCGGGSCEEEEE
T ss_pred             CCceECCCCCEEEEEEEcCCCccCCccccce
Confidence            345677899999999988763  34688887

>d1d5mb1 b.1.1.2 (B:93-190) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DR group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DR group [TaxId: 9606]

Probab=97.32  E-value=0.00045  Score=44.18  Aligned_cols=68  Identities=13%  Similarity=0.289  Sum_probs=35.9

Q ss_pred             EcCCcEEEEEEecCC--CceEEEEEEcCceeEEEeeee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         34 TVGKEALMACVVENL--REYKVAWVKMITQTILSIHHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      ..++..+|.|.+.+.  +...|.|++++..........  ....++.+.         .+....+...+.+.|+|.+.+.
T Consensus        16 ~~~~~~tL~C~v~~F~P~~i~v~W~~~g~~~~~~~~~~~~~~~~dgtf~---------~~s~l~~~~~~~~~ytC~V~H~   86 (98)
T d1d5mb1          16 PLQHHNLLVCSVNGFYPGSIEVRWFRNGQEEKTGVVSTGLIQNGDWTFQ---------TLVMLETVPRSGEVYTCQVEHP   86 (98)
T ss_dssp             -----CEEEEEEEEEBSSCCEEEEEETTEECCSSEEECCCEECSSSCEE---------EEEEEECCCCTTCEEEEEEECT
T ss_pred             ccCCceEEEEEEeeeECCCcEEEEEECCEEcCCCCEECeEEeCCCcEEE---------EEEEeeEcCCCCCEEEEEEEEC
Confidence            346777899999873  347999999543221110010  111222232         2333345667888999999765


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        87 s   87 (98)
T d1d5mb1          87 S   87 (98)
T ss_dssp             T
T ss_pred             C
Confidence            4

>d3d85d1 b.1.1.4 (D:1-87) The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: The p40 domain of interleukin-12 (IL-12 beta chain), N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.32  E-value=0.00046  Score=41.38  Aligned_cols=49  Identities=27%  Similarity=0.400  Sum_probs=33.5

Q ss_pred             cCccEEEEEEEeecCCceeEEecCCCeee-ecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEE
Q psy15734        189 VSQTVELHCHTEAFPASLNYWTNEKGDMI-ITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCV  254 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~p~~~W~~~~~~~~-~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~  254 (314)
                      .|+.+.|.|...-  ...|.|.+++...+ .++.               +|.|.=-...|+|+|+|.
T Consensus        20 ~~~~V~L~C~t~e--E~~I~W~kd~~se~~~~Gn---------------tltV~VkE~~~aGnYTCh   69 (87)
T d3d85d1          20 PGEMVVLTCDTPE--EDGITWTLDQSSEVLGSGK---------------TLTIQVKEFGDAGQYTCH   69 (87)
T ss_dssp             CCEEEEEECSSSC--CSSCEEEETTCCCCCEESS---------------EEEEEECSGGGCEEEEEE
T ss_pred             CccEEEEecCCCc--ccccEEeeCCccccccCCC---------------EEEEEEEeccCCcceeEe
Confidence            4678999994322  34799999855433 3332               666665566799999996

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=97.31  E-value=0.0003  Score=44.93  Aligned_cols=69  Identities=17%  Similarity=0.275  Sum_probs=39.9

Q ss_pred             EEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEe-eee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         33 ATVGKEALMACVVENL--REYKVAWVKMITQTILSI-HHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      +..++.++|.|.+.+.  ....|.|++++ ..+... ...  ....++.+.+..      .|.+   ..++...|+|.+.
T Consensus        14 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~s------~L~v---~~~~~~~ytC~V~   83 (98)
T d1hdmb1          14 FNTREPVMLACYVWGFYPAEVTITWRKNG-KLVMHSSAHKTAQPNGDWTYQTLS------HLAL---TPSYGDTYTCVVE   83 (98)
T ss_dssp             CSSSCSEEEEEEEEEEBSSCCEEEEEETT-EECCCCCSBCCCEECSSSCEEEEE------EEEE---CCCTTCCEEEEEE
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECC-EeccCCeEeCceEECCCCCEEEEE------EeEc---CCCCCCEEEEEEE
Confidence            3457789999999884  45899999954 332111 010  111222333221      3544   4556668999997


Q ss_pred             cCCC
Q psy15734        108 TVPM  111 (314)
Q Consensus       108 ~~~~  111 (314)
                      +.+.
T Consensus        84 H~sl   87 (98)
T d1hdmb1          84 HIGA   87 (98)
T ss_dssp             CTTS
T ss_pred             eCCC
Confidence            6543

>d1igyb3 b.1.1.2 (B:236-361) Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 2, CH2-gamma
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.28  E-value=8.1e-06  Score=54.62  Aligned_cols=82  Identities=10%  Similarity=0.131  Sum_probs=50.5

Q ss_pred             EcCCCc-ceeecCccEEEEEEEeecCC----ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEE
Q psy15734        179 TIPNQL-EGAFVSQTVELHCHTEAFPA----SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRC  253 (314)
Q Consensus       179 ~~~~~~-~~v~~g~~~~l~C~~~g~p~----p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C  253 (314)
                      .++|.. ..+..+..++|.|.+.|+.+    ..+.|.+++...............++.|...+.|.|..-.....-.|+|
T Consensus        17 i~pPs~~e~l~~~~~~tL~C~v~gf~P~~~~v~~~W~~~~~~~~~~~~~~~~~~~~gt~s~~S~L~v~~~~W~~g~~ytC   96 (116)
T d1igyb3          17 IFPPKPKDTLLITVTPKVTCVVVDISKDDPEVQFSWFVDNVEVHTAQTQPREEQFNSTFRVVSALPIMHQDWLNGKEFKC   96 (116)
T ss_dssp             EECCCHHHHHSTTSCCEEEEEECCCCSSCCCCCBCBBSSSCCBCCCSCCCCCCCCSSSCCCCCCEECCHHHHHHTCCCBC
T ss_pred             EECcChHHhcccCCCcEEEEEEecEeCCCCEEEEEECcCCeEcCCcEEcccEECCCCCEEEEEEEEECHHHhCCCCEEEE
Confidence            334433 24567899999999998543    2456888654432222221222223336677788887766656668999


Q ss_pred             EEeeCCC
Q psy15734        254 VAVNALG  260 (314)
Q Consensus       254 ~a~n~~g  260 (314)
                      +|.+...
T Consensus        97 ~V~H~~l  103 (116)
T d1igyb3          97 RVNSAAF  103 (116)
T ss_dssp             CBCCSSC
T ss_pred             EEEeCCC
Confidence            9987653

>d3c2ah1 b.1.1.1 (H:1-113) Immunoglobulin heavy chain variable domain, VH {Human (Homo sapiens), cluster 4 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Human (Homo sapiens), cluster 4 [TaxId: 9606]

Probab=97.27  E-value=0.00094  Score=44.47  Aligned_cols=21  Identities=19%  Similarity=0.461  Sum_probs=18.7

Q ss_pred             EEEEEeecCCCCCeEEEEEEe
Q psy15734        236 MTLKIRSILSHQFGSYRCVAV  256 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a~  256 (314)
                      ..|.|.+++.+|++.|.|...
T Consensus        81 ~~Lq~~~L~~eDTAvYYCAR~  101 (131)
T d3c2ah1          81 LYLQMNSLKTEDTAVYSCTTD  101 (131)
T ss_dssp             EEEEECSCCGGGCEEEEEEEE
T ss_pred             eecceeccccCCceEEEEecc
Confidence            489999999999999999754

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.23  E-value=0.00041  Score=44.11  Aligned_cols=66  Identities=12%  Similarity=0.158  Sum_probs=36.5

Q ss_pred             cCCcEEEEEEecCC--CceEEEEEEcCceeEEEee-ee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENL--REYKVAWVKMITQTILSIH-HK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~-~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .+..++|.|.+.+.  ....|+|.+++. .+.... ..  ....++.+..         .....+...+...|+|.+.+.
T Consensus        14 ~~~~~~L~C~~~gFyP~~i~vtW~~~g~-~~~~~~~~~~~~~~~~~~~~~---------~s~l~v~~~~~~~ytC~V~H~   83 (95)
T d1k5na1          14 SDHEATLRCWALGFYPAEITLTWQRDGE-DQTQDTELVETRPAGDRTFQK---------WAAVVVPSGEEQRYTCHVQHE   83 (95)
T ss_dssp             ETTEEEEEEEEEEEBSSCCEEEEEETTE-ECGGGCEECCCEECSSSCEEE---------EEEEEEETTCGGGEEEEEECT
T ss_pred             CCCCEEEEEEEEeEeCCCCEEEEEECCE-EcCCCceeccEEcCCCCeEEE---------EEEEEEEcCCCCEEEEEEEEC
Confidence            35689999999884  347899999543 221100 00  0111122221         222234455667899999765


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        84 ~   84 (95)
T d1k5na1          84 G   84 (95)
T ss_dssp             T
T ss_pred             c
Confidence            4

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=0.0026  Score=40.02  Aligned_cols=70  Identities=14%  Similarity=0.211  Sum_probs=38.8

Q ss_pred             EcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEeeeeeeecCcCEEEEeCCceeE-EEEEeeecCCCCeEEEEEEecCC
Q psy15734         34 TVGKEALMACVVENL-R-EYKVAWVKMITQTILSIHHKVVTQNKRVSITFNDHRSW-FLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        34 ~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      ..++.++|.|.+.+. | ...+.|++++ ..+.....      .......++...+ ......+...|...|+|.+.+.+
T Consensus        13 ~~~~~~tL~C~~~gFyP~~i~v~W~~dg-~~~~~~~~------~~~~~~~~~~~t~~~~s~l~v~~~~~~~ytC~V~H~s   85 (94)
T d1de4a1          13 VTSSVTTLRCRALNYYPQNITMKWLKDK-QPMDAKEF------EPKDVLPNGDGTYQGWITLAVPPGEEQRYTCQVEHPG   85 (94)
T ss_dssp             ECSSCEEEEEEEEEEBSSCCEEEEEETT-EECCGGGS------CCCEEEECTTSCEEEEEEEEECTTCGGGEEEEEECTT
T ss_pred             CCCCCEEEEEEEeeEECCCCEEEEEECC-EECccCcc------cccceEeCCCceEEEEEEEEECCCCCCEEEEEEEeCC
Confidence            456789999999883 4 4799999954 33221100      0011111111111 22333455567778999997654

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.19  E-value=0.00037  Score=45.23  Aligned_cols=69  Identities=12%  Similarity=0.261  Sum_probs=41.3

Q ss_pred             cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe----eeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEec
Q psy15734         35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSI----HHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINT  108 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~----~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~  108 (314)
                      .++.++|.|.+.+. | ...|.|++++. .+...    .......++.+.+..      .|.|..-...+...|+|.+.+
T Consensus        18 ~~~~vtL~Clv~~f~P~~i~v~W~~~g~-~~~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~g~~ytC~V~H   90 (105)
T d1fp5a2          18 SRDKRTLACLIQNFMPEDISVQWLHNEV-QLPDARHSTTQPRKTKGSGFFVFS------RLEVTRAEWEQKDEFICRAVH   90 (105)
T ss_dssp             SSCCEEEEEEEEEEBSSCCEEEEEETTE-ECCGGGEEECCCEECSSSCEEEEE------EEEECHHHHTTGGGEEEEEEC
T ss_pred             cCCcEEEEEEEEeeeCCCcEEEEEECCE-ECCCceeEeeeeEecCCCCEEEEE------EEEECHHHcCCCCEEEEEEEE
Confidence            46789999999773 3 47999999543 32111    001112233444332      577766655555679999976


Q ss_pred             CC
Q psy15734        109 VP  110 (314)
Q Consensus       109 ~~  110 (314)
                      .+
T Consensus        91 ~~   92 (105)
T d1fp5a2          91 EA   92 (105)
T ss_dssp             TT
T ss_pred             CC
Confidence            43

>d1b2wh1 b.1.1.1 (H:1-117) Immunoglobulin heavy chain variable domain, VH {Engineered (including hybrid species)}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Immunoglobulin heavy chain variable domain, VH
species: Engineered (including hybrid species)

Probab=97.15  E-value=0.00029  Score=45.88  Aligned_cols=20  Identities=20%  Similarity=0.467  Sum_probs=18.1

Q ss_pred             EEEEEeecCCCCCeEEEEEE
Q psy15734        236 MTLKIRSILSHQFGSYRCVA  255 (314)
Q Consensus       236 s~L~i~~~~~~d~G~Y~C~a  255 (314)
                      ..|.|.+++.+|++.|.|..
T Consensus        79 ~~L~~~sL~~eDTAvYYCAr   98 (117)
T d1b2wh1          79 LYLQMNSLRPEDTAVYYCAR   98 (117)
T ss_dssp             EEEEECSCCGGGCEEEECCE
T ss_pred             EEeeeccccCCcceEEEEcc
Confidence            48999999999999999964

>d1pfca_ b.1.1.2 (A:) Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma {Guinea pig (Cavia porcellus) [TaxId: 10141]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain gamma constant domain 3, CH3-gamma
species: Guinea pig (Cavia porcellus) [TaxId: 10141]

Probab=97.12  E-value=9.7e-05  Score=48.69  Aligned_cols=69  Identities=13%  Similarity=0.125  Sum_probs=43.1

Q ss_pred             cCccEEEEEEEeecCC--ceeEEecCCCeeeecCCceeeeEeeCCeeeEEEEEEeecCCCCCeEEEEEEeeCC
Q psy15734        189 VSQTVELHCHTEAFPA--SLNYWTNEKGDMIITGDDYEDSRLINGYSCHMTLKIRSILSHQFGSYRCVAVNAL  259 (314)
Q Consensus       189 ~g~~~~l~C~~~g~p~--p~~~W~~~~~~~~~~~~~~~~~~~~~~~~~~s~L~i~~~~~~d~G~Y~C~a~n~~  259 (314)
                      .+..++|.|.+.|+-+  ..|.|.+++........  .....++.|...+.|.|..-.....-.|+|.|.+..
T Consensus        26 ~~~~~tL~C~v~gf~P~~i~v~W~~~~~~~~~~~~--~~~~~dgtys~~S~L~v~~~~W~~~~~ytC~V~H~~   96 (111)
T d1pfca_          26 SKKKVSLTCMITGFYPADINVEWDSSEPSDYKNTP--PVFDTDGSFFLYSRLKVDTDAWNNGESFTCSVMHEA   96 (111)
T ss_dssp             CTTSCCEEEEEESCCSSCCEEESSSCCTTTEEEEE--EECCSSCCCEEEEEECCCSSCCHHHHCCEEEEEETT
T ss_pred             cCCceEEEEEEEeeECCCcEEEEeeCCCCCcEEcc--cEECCCCcEEEEEEEEECHHHhCCCCEEEEEEEeCC
Confidence            3567899999999644  47789886532211111  111223337777788776655444557999999864

>d2fbjh2 b.1.1.2 (H:119-220) Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain alpha constant domain 1, CH1-alpha
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.11  E-value=0.0029  Score=40.56  Aligned_cols=70  Identities=14%  Similarity=0.274  Sum_probs=41.2

Q ss_pred             cCCcEEEEEEecCC-Cc--eEEEEEEcCceeEEE-eeeeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecCC
Q psy15734         35 VGKEALMACVVENL-RE--YKVAWVKMITQTILS-IHHKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTVP  110 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~~--~~v~W~~~~~~~~~~-~~~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~~  110 (314)
                      .++.+.|.|.+.+. |.  ..+.|.+++ ..... ........++.+.+..      .|.|..-.......|+|.+.+..
T Consensus        18 ~~~~v~L~Clv~gF~P~~~i~v~W~~~~-~~~~~~~~~~~~~~~gtys~~S------~L~v~~~~W~~~~~ytC~V~H~s   90 (102)
T d2fbjh2          18 SSDPVIIGCLIHDYFPSGTMNVTWGKSG-KDITTVNFPPALASGGRYTMSN------QLTLPAVECPEGESVKCSVQHDS   90 (102)
T ss_dssp             CCSSEEEEEEEEEEBSCCCEEEEESCCC-SSCEEEECCCEECSSSCEEEEE------EEEECGGGSCTTCEEEEEEEETT
T ss_pred             CCCcEEEEEEEEcccCCCcEEEEEccCC-CcCceeEeeeEecCCCCEEEEE------EEEEeHHHccCCCEEEEEEEECC
Confidence            46789999999884 43  467777643 33221 1111223344444432      57777666555567999997643


Q ss_pred             C
Q psy15734        111 M  111 (314)
Q Consensus       111 ~  111 (314)
                      .
T Consensus        91 ~   91 (102)
T d2fbjh2          91 N   91 (102)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1u58a1 b.1.1.2 (A:145-242) Immunomodulatory protein m144, alpha-3 domain {Murine cytomegalovirus [TaxId: 10366]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunomodulatory protein m144, alpha-3 domain
species: Murine cytomegalovirus [TaxId: 10366]

Probab=97.08  E-value=0.0015  Score=41.60  Aligned_cols=67  Identities=16%  Similarity=0.251  Sum_probs=40.3

Q ss_pred             ccEEEEEEEeecCCc--eeEEecCCCeeee---cCCce-eeeEeeCC-eeeEEEEEEeecCCCCCeEEEEEEeeCCC
Q psy15734        191 QTVELHCHTEAFPAS--LNYWTNEKGDMII---TGDDY-EDSRLING-YSCHMTLKIRSILSHQFGSYRCVAVNALG  260 (314)
Q Consensus       191 ~~~~l~C~~~g~p~p--~~~W~~~~~~~~~---~~~~~-~~~~~~~~-~~~~s~L~i~~~~~~d~G~Y~C~a~n~~g  260 (314)
                      ..++|.|.+.|+.+.  .|.|++++.....   ..... ......++ |...+.|.|..   .+...|+|.+.....
T Consensus        15 ~~vtL~C~~~gFyP~~I~v~W~~ng~~~~~~~~~~~~~~~~~~~~dgty~~~s~l~v~~---~~~~~ytC~V~H~s~   88 (98)
T d1u58a1          15 GGMRLRCFARDYYPADLEIRWWKDDGGGGALPQTSKQHHDPLPSGNGLYQKHIDVYVDG---GLEHVYSCRVKGIAT   88 (98)
T ss_dssp             SCEEEEEEEEEEBSSCEEEEEEEECSSSCEEECCCSCCCCCEECSSSCEEEEEEEEECT---TCGGGEEEEEEEGGG
T ss_pred             CcEEEEEEEEEEcCCCCEEEEEECCccccCcEeeeeEEcceeeCCCCEEEEEEEEEECC---CCCCEEEEEEEeCCC
Confidence            478999999997665  5579997543211   11111 11222333 77777777754   344579999986543

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.07  E-value=0.0012  Score=41.28  Aligned_cols=66  Identities=6%  Similarity=0.120  Sum_probs=37.2

Q ss_pred             cCCcEEEEEEecCC--CceEEEEEEcCceeEEEeee---eeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENL--REYKVAWVKMITQTILSIHH---KVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .++.++|.|.+.+.  ....|.|.+++ ..+.....   .....++.+...      ..|.|.   ..|...|+|.+.+.
T Consensus        14 ~~~~~~L~C~a~gFyP~~i~v~W~~~g-~~~~~~~~~~~~~~~~~gt~~~~------s~l~v~---~~~~~~ytC~V~H~   83 (89)
T d2mhaa1          14 PEDKVTLRCWALGFYPADITLTWQLNG-EELIQDMELVETRPAGDGTFQKW------ASVVVP---LGKEQYYTCHVYHQ   83 (89)
T ss_dssp             CSSEEEEEEEEESCBSSCCEEEEEETT-EEECTTCEECCCEECSSSCEEEE------EEEEEE---SSTTTTCEEEEECS
T ss_pred             CCCCEEEEEEEEeEECCCCEEEEEECC-EEeCCCEEECcEecCCCCcEEEE------EEEEec---CcCCCEEEEEEEEC
Confidence            45789999999885  34789999954 33221110   011222222222      145554   34555799999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        84 ~   84 (89)
T d2mhaa1          84 G   84 (89)
T ss_dssp             S
T ss_pred             C
Confidence            3

>d1fnga1 b.1.1.2 (A:82-182) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-E group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-E group [TaxId: 10090]

Probab=97.04  E-value=0.0015  Score=41.77  Aligned_cols=68  Identities=10%  Similarity=0.369  Sum_probs=39.3

Q ss_pred             EEcCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEe-eee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         33 ATVGKEALMACVVENL-R-EYKVAWVKMITQTILSI-HHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      +..|+..+|.|.+.+. | ...|.|++++ ..+... ...  ....++.+.+..      .|.+..   .+...|+|.+.
T Consensus        16 ~~~~~~~tL~C~v~gF~P~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgty~~~S------~L~v~~---~~~~~ytC~V~   85 (101)
T d1fnga1          16 VNLGEPNILICFIDKFSPPVVNVTWLRNG-RPVTEGVSETVFLPRDDHLFRKFH------YLTFLP---STDDFYDCEVD   85 (101)
T ss_dssp             CCTTSCEEEEEEEEEEBSSCCEEEEEETT-EEECSSEEECCCEECSSSCEEEEE------EEEECC---CTTCCEEEEEE
T ss_pred             ccCCCCEEEEEEEEeEECCCCEEEEEECC-eecCCCcEeCeEEECCCCcEEEEE------EeEEcC---CCCCEEEEEEE
Confidence            3457788999999884 3 4799999954 433211 000  112223333322      455543   45568999997


Q ss_pred             cCC
Q psy15734        108 TVP  110 (314)
Q Consensus       108 ~~~  110 (314)
                      +.+
T Consensus        86 H~s   88 (101)
T d1fnga1          86 HWG   88 (101)
T ss_dssp             CTT
T ss_pred             ECC
Confidence            654

>d1q0xl2 b.1.1.2 (L:108-212) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.0011  Score=42.60  Aligned_cols=69  Identities=14%  Similarity=0.222  Sum_probs=41.8

Q ss_pred             cCCcEEEEEEecCC-C-ceEEEEEEcCceeEEEee---eeeeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEecC
Q psy15734         35 VGKEALMACVVENL-R-EYKVAWVKMITQTILSIH---HKVVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQINTV  109 (314)
Q Consensus        35 ~g~~~~l~C~~~~~-~-~~~v~W~~~~~~~~~~~~---~~~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~~~  109 (314)
                      .++.++|.|.+.+. | ...|.|++++ ..+....   ......++.+.+..      .|.|..-.......|+|.+.+.
T Consensus        19 ~~~~~tl~C~v~~f~P~~i~v~W~~~g-~~~~~~~~t~~~~~~~dgtys~~S------~L~v~~~~w~~~~~ytC~V~H~   91 (102)
T d1q0xl2          19 STAKATLVCTITDFYPGVVTVDWKVDG-TPVTAGMETTQPSKQSNNKYMASS------YLTLTARAWERHSSYSCQVTHE   91 (102)
T ss_dssp             TTTEEEEEEEEEEEBSSCCEEEEEETT-EEECTTEEECCCEECTTSCEEEEE------EEEEEHHHHTTCCEEEEEEEET
T ss_pred             CCCeEEEEEEEeeeeCCCCEEEEEECC-EECCCCeEecccEEcCCCCEEEEE------EEEECHHHhCCCCEEEEEEEEC
Confidence            35678999999874 3 4789999954 3322111   11112334444432      5777666555667899999764


Q ss_pred             C
Q psy15734        110 P  110 (314)
Q Consensus       110 ~  110 (314)
                      +
T Consensus        92 ~   92 (102)
T d1q0xl2          92 G   92 (102)
T ss_dssp             T
T ss_pred             C
Confidence            3

>d1uvqa1 b.1.1.2 (A:85-183) Class II MHC alpha chain, C-terminal domain {Human (Homo sapiens), HLA-DQ group [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Human (Homo sapiens), HLA-DQ group [TaxId: 9606]

Probab=97.03  E-value=0.0016  Score=41.54  Aligned_cols=68  Identities=15%  Similarity=0.343  Sum_probs=39.2

Q ss_pred             EEcCCcEEEEEEecCC--CceEEEEEEcCceeEEEe-eee--eeecCcCEEEEeCCceeEEEEEeeecCCCCeEEEEEEe
Q psy15734         33 ATVGKEALMACVVENL--REYKVAWVKMITQTILSI-HHK--VVTQNKRVSITFNDHRSWFLHLRDVQETDRGWYMCQIN  107 (314)
Q Consensus        33 v~~g~~~~l~C~~~~~--~~~~v~W~~~~~~~~~~~-~~~--~~~~~~~~~~~~~~~~~~~L~i~~~~~~d~G~Y~C~~~  107 (314)
                      +..|+..+|.|.+.+.  ....|.|.+++ ..+... ...  ....++.+.+..      .|.+.   .+|...|+|.+.
T Consensus        16 ~~~~~~~tL~C~~~gFyP~~i~v~W~~ng-~~~~~~~~~~~~~~~~dgtf~~~s------~l~v~---~~~~~~ytC~V~   85 (99)
T d1uvqa1          16 VTLGQPNTLICLVDNIFPPVVNITWLSNG-QSVTEGVSETSFLSKSDHSFFKIS------YLTFL---PSADEIYDCKVE   85 (99)
T ss_dssp             CCTTSCEEEEEEEEEECSSCCEEEEEETT-EEECTTEEECCCEECTTSCEEEEE------EEEEC---CCTTCCEEEEEE
T ss_pred             ccCCCcEEEEEEEEEEECCCCEEEEEECC-EeccCCcEecceEECCCCCEEEEE------EEEEc---CCCCCEEEEEEE
Confidence            3467888999999884  34789999954 433211 001  112222333221      35444   456668999997


Q ss_pred             cCC
Q psy15734        108 TVP  110 (314)
Q Consensus       108 ~~~  110 (314)
                      +.+
T Consensus        86 H~s   88 (99)
T d1uvqa1          86 HWG   88 (99)
T ss_dssp             CTT
T ss_pred             eCC
Confidence            654