Psyllid ID: psy15736

---

Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70
Protein Sequence
MEGEDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL
Secondary Structure (PSIPRED)
ccccccccHHHHHHHccccccccccEEEEEEEcccccccEEEEEcEEEEccccEEEEEEEEccccccccc
Secondary Structure Prediction (SSPRO)
cccccccHHHHHHHHcccccccHHHHHHHHHccccccccEEEEEEEEEcccccEEEEEEEEEcccccccc
Coil and Loop (DISEMBL)
megedheekeyqeeeeeepekdKEEVRRRRRRNQKNLPEIEVERswvhsgegyeAQLVCIVHaephadpl
Flexible Loop (DISEMBL)
megedheekeyqeeeeeepekdkeevrrrrrrnqknlpeieverswvhsgEGYEAQLVCIVHAEPHADPL
Low Complexity Region (SEG)
MegedheekeyqeeeeeepekdkeevrrrrrrNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL
Disordered region (IsUnstruct)
******************************************ERSWVHSGEGYEAQLVCIVH********
Disordered Region (DISOPRED)
***************************RRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP*****
Disordered Region (DISEMBL)
*******************************RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL
Disordered Region (DISPRO)
*************************VRRR**RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP*****
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhhoooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooo
TM Helix, Signal Peptide (Phobius)
oooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MEGEDHEEKEYQEEEEEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

No hits with e-value below 0.001 by BLAST

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
242018223	500	limbic system-associated membrane protei	0.471	0.066	0.878	5e-09
242021179	454	limbic system-associated membrane protei	0.471	0.072	0.818	2e-08
242005474	369	lachesin precursor, putative [Pediculus	0.4	0.075	0.928	4e-07
328701975	551	PREDICTED: neural cell adhesion molecule	0.442	0.056	0.838	9e-07
328701973	535	PREDICTED: neural cell adhesion molecule	0.442	0.057	0.838	9e-07
195443868	492	GK11479 [Drosophila willistoni] gi|19416	0.428	0.060	0.733	8e-06
195054068	409	GH22352 [Drosophila grimshawi] gi|193895	0.428	0.073	0.7	9e-06
195113691	526	GI21998 [Drosophila mojavensis] gi|19391	0.428	0.057	0.7	1e-05
195399512	476	GJ14353 [Drosophila virilis] gi|19414192	0.428	0.063	0.7	2e-05
170060459	169	conserved hypothetical protein [Culex qu	0.614	0.254	0.534	2e-05

>gi|242018223|ref|XP_002429579.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212514537|gb|EEB16841.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score = 65.1 bits (157), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 29/33 (87%), Positives = 31/33 (93%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL 70
           PEIEVERSWVHSGEG+EAQLVCIVH+EP AD L
Sbjct: 222 PEIEVERSWVHSGEGFEAQLVCIVHSEPPADVL 254

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242021179|ref|XP_002431023.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis] gi|212516252|gb|EEB18285.1| limbic system-associated membrane protein precursor, putative [Pediculus humanus corporis]

 Score = 63.5 bits (153), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 27/33 (81%), Positives = 31/33 (93%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL 70
           PE+EVERSWVHSGEG+EAQLVCIVHA+P +D L
Sbjct: 207 PEVEVERSWVHSGEGFEAQLVCIVHADPPSDVL 239

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242005474|ref|XP_002423590.1| lachesin precursor, putative [Pediculus humanus corporis] gi|212506738|gb|EEB10852.1| lachesin precursor, putative [Pediculus humanus corporis]

 Score = 58.5 bits (140), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 26/28 (92%), Positives = 26/28 (92%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEP 65
           PEIEVERSWVHS EGYEAQLVCIVH EP
Sbjct: 142 PEIEVERSWVHSSEGYEAQLVCIVHGEP 169

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701975|ref|XP_003241763.1| PREDICTED: neural cell adhesion molecule 1-like isoform 2 [Acyrthosiphon pisum]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/31 (83%), Positives = 28/31 (90%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHAD 68
           PEIEVER WVHSGEG EA LVCIV+AEPHA+
Sbjct: 262 PEIEVERVWVHSGEGNEALLVCIVNAEPHAE 292

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328701973|ref|XP_001945384.2| PREDICTED: neural cell adhesion molecule 1-like isoform 1 [Acyrthosiphon pisum]

 Score = 57.8 bits (138), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 26/31 (83%), Positives = 28/31 (90%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHAD 68
           PEIEVER WVHSGEG EA LVCIV+AEPHA+
Sbjct: 262 PEIEVERVWVHSGEGNEALLVCIVNAEPHAE 292

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195443868|ref|XP_002069612.1| GK11479 [Drosophila willistoni] gi|194165697|gb|EDW80598.1| GK11479 [Drosophila willistoni]

 Score = 54.3 bits (129), Expect = 8e-06,   Method: Composition-based stats.
 Identities = 22/30 (73%), Positives = 29/30 (96%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
           P+I+VE+SW+HSGEGYEA+LVCIV+A+P A
Sbjct: 240 PDIQVEKSWIHSGEGYEAKLVCIVYADPVA 269

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195054068|ref|XP_001993948.1| GH22352 [Drosophila grimshawi] gi|193895818|gb|EDV94684.1| GH22352 [Drosophila grimshawi]

 Score = 54.3 bits (129), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 29/30 (96%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
           P+I+VE+SW+HSGEG+EA+LVCIV+A+P A
Sbjct: 148 PDIQVEKSWIHSGEGFEAKLVCIVYADPVA 177

Source: Drosophila grimshawi

Species: Drosophila grimshawi

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195113691|ref|XP_002001401.1| GI21998 [Drosophila mojavensis] gi|193917995|gb|EDW16862.1| GI21998 [Drosophila mojavensis]

 Score = 54.3 bits (129), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 29/30 (96%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
           P+I+VE+SW+HSGEG+EA+LVCIV+A+P A
Sbjct: 265 PDIQVEKSWIHSGEGFEAKLVCIVYADPVA 294

Source: Drosophila mojavensis

Species: Drosophila mojavensis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195399512|ref|XP_002058363.1| GJ14353 [Drosophila virilis] gi|194141923|gb|EDW58331.1| GJ14353 [Drosophila virilis]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 21/30 (70%), Positives = 29/30 (96%)

Query: 38  PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
           P+I+VE+SW+HSGEG+EA+LVCIV+A+P A
Sbjct: 215 PDIQVEKSWIHSGEGFEAKLVCIVYADPVA 244

Source: Drosophila virilis

Species: Drosophila virilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170060459|ref|XP_001865812.1| conserved hypothetical protein [Culex quinquefasciatus] gi|167878926|gb|EDS42309.1| conserved hypothetical protein [Culex quinquefasciatus]

 Score = 53.5 bits (127), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 23/43 (53%), Positives = 30/43 (69%)

Query: 24  EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH 66
           E V    R +    P+I V++SW+HSGEG+EAQL CIVHA+P 
Sbjct: 83  EAVTVDMRLDVLYPPDISVDKSWIHSGEGFEAQLECIVHADPQ 125

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	70
FB|FBgn0017590	545	klg "klingon" [Drosophila mela	0.428	0.055	0.7	6e-07
FB|FBgn0037107	467	CG7166 [Drosophila melanogaste	0.471	0.070	0.575	4.5e-06

FB|FBgn0017590 klg "klingon" [Drosophila melanogaster (taxid:7227)]

 Score = 124 (48.7 bits), Expect = 6.0e-07, P = 6.0e-07
 Identities = 21/30 (70%), Positives = 28/30 (93%)

Query:    38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHA 67
             P+I+VE+SW+HSGEG+EA+LVCIV A+P A
Sbjct:   288 PDIQVEKSWIHSGEGFEAKLVCIVFADPVA 317

GO:0019897 "extrinsic to plasma membrane" evidence=ISS

GO:0007465 "R7 cell fate commitment" evidence=IGI

GO:0045466 "R7 cell differentiation" evidence=IMP

GO:0007156 "homophilic cell adhesion" evidence=IDA

GO:0007611 "learning or memory" evidence=IMP

GO:0008355 "olfactory learning" evidence=IMP

GO:0048149 "behavioral response to ethanol" evidence=IMP

GO:0007616 "long-term memory" evidence=IMP

GO:0007615 "anesthesia-resistant memory" evidence=IMP

FB|FBgn0037107 CG7166 [Drosophila melanogaster (taxid:7227)]

 Score = 115 (45.5 bits), Expect = 4.5e-06, P = 4.5e-06
 Identities = 19/33 (57%), Positives = 27/33 (81%)

Query:    38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADPL 70
             PEI VE+SWVH+ EGY+ +LVCIVH + +++ L
Sbjct:   225 PEITVEKSWVHASEGYDVELVCIVHGDVNSEML 257


Parameters:
  V=100
  filter=SEG
  E=0.001

  ctxfactor=1.00

  Query                        -----  As Used  -----    -----  Computed  ----
  Frame  MatID Matrix name     Lambda    K       H      Lambda    K       H
   +0      0   BLOSUM62        0.314   0.132   0.414    same    same    same
               Q=9,R=2         0.244   0.0300  0.180     n/a     n/a     n/a

  Query
  Frame  MatID  Length  Eff.Length     E     S W   T  X   E2     S2
   +0      0       70        39   0.00091  102 3  11 23  0.41    26
                                                     29  0.46    23


Statistics:

  Database:  /share/blast/go-seqdb.fasta
   Title:  go_20130330-seqdb.fasta
   Posted:  5:47:42 AM PDT Apr 1, 2013
   Created:  5:47:42 AM PDT Apr 1, 2013
   Format:  XDF-1
   # of letters in database:  169,044,731
   # of sequences in database:  368,745
   # of database sequences satisfying E:  2
  No. of states in DFA:  487 (52 KB)
  Total size of DFA:  85 KB (2065 KB)
  Time to generate neighborhood:  0.00u 0.00s 0.00t   Elapsed:  00:00:00
  No. of threads or processors used:  24
  Search cpu time:  6.15u 0.15s 6.30t   Elapsed:  00:00:00
  Total cpu time:  6.15u 0.15s 6.30t   Elapsed:  00:00:00
  Start:  Thu Aug 15 15:22:31 2013   End:  Thu Aug 15 15:22:31 2013

GO:0005576 "extracellular region" evidence=ISS

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

No hit with e-value below 0.005

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	70
cd05773	109	Ig8_hNephrin_like Eighth immunoglobulin-like domai	98.05
cd05851	88	Ig3_Contactin-1 Third Ig domain of contactin-1. Ig	97.62
cd05730	95	Ig3_NCAM-1_like Third immunoglobulin (Ig)-like dom	97.61
cd05898	98	Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain	97.55
cd07693	100	Ig1_Robo First immunoglobulin (Ig)-like domain in	97.52
cd05758	98	Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like do	97.42
cd05771	139	IgC_Tapasin_R Tapasin-R immunoglobulin-like domain	97.37
cd05747	92	Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like	97.25
KOG3513|consensus	1051		97.21
cd04968	88	Ig3_Contactin_like Third Ig domain of contactin. I	97.13
cd05870	98	Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain o	97.12
cd05732	96	Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like dom	97.02
PF07679	90	I-set: Immunoglobulin I-set domain; InterPro: IPR0	96.94
cd05869	97	Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain o	96.59
cd05856	82	Ig2_FGFRL1-like Second immunoglobulin (Ig)-like do	96.54
cd04972	90	Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) o	96.5
cd05762	98	Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of	96.26
cd05737	92	Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-	96.02
cd04975	101	Ig4_SCFR_like Fourth immunoglobulin (Ig)-like doma	96.0
cd05752	78	Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like do	95.85
cd05894	86	Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of card	95.83
PF13927	75	Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1V	95.81
PF13895	80	Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V	95.79
cd05891	92	Ig_M-protein_C C-terminal immunoglobulin (Ig)-like	95.73
cd05859	101	Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like do	95.67
PHA02785	326	IL-beta-binding protein; Provisional	95.65
cd05857	85	Ig2_FGFR Second immunoglobulin (Ig)-like domain of	95.5
cd05729	85	Ig2_FGFR_like Second immunoglobulin (Ig)-like doma	95.35
cd05749	81	Ig2_Tyro3_like Second immunoglobulin (Ig)-like dom	95.06
cd05728	85	Ig4_Contactin-2-like Fourth Ig domain of the neura	94.99
cd05848	94	Ig1_Contactin-5 First Ig domain of contactin-5. Ig	94.83
cd04977	92	Ig1_NCAM-1_like First immunoglobulin (Ig)-like dom	94.73
cd05866	92	Ig1_NCAM-2 First immunoglobulin (Ig)-like domain o	94.68
cd05722	95	Ig1_Neogenin First immunoglobulin (Ig)-like domain	94.55
cd05850	94	Ig1_Contactin-2 First Ig domain of contactin-2. Ig	94.36
cd07701	95	Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-	94.06
cd05865	96	Ig1_NCAM-1 First immunoglobulin (Ig)-like domain o	93.82
PF08205	89	C2-set_2: CD80-like C2-set immunoglobulin domain ;	93.26
cd05724	86	Ig2_Robo Second immunoglobulin (Ig)-like domain in	93.18
cd05882	95	Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-	92.95
cd05860	101	Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of	92.88
cd07698	93	IgC_MHC_I_alpha3 Class I major histocompatibility	92.68
cd05849	93	Ig1_Contactin-1 First Ig domain of contactin-1. Ig	92.41
KOG3513|consensus	1051		92.34
KOG4221|consensus	1381		92.3
cd05717	95	Ig1_Necl-1-3_like First (N-terminal) immunoglobuli	91.52
cd04979	89	Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of	91.27
cd05740	91	Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domai	91.12
cd05754	85	Ig3_Perlecan_like Third immunoglobulin (Ig)-like d	90.84
PHA02826	227	IL-1 receptor-like protein; Provisional	90.57
cd04967	91	Ig1_Contactin First Ig domain of contactin. Ig1_Co	90.42
cd05871	91	Ig_Semaphorin_classIII Immunoglobulin (Ig)-like do	90.2
cd05755	100	Ig2_ICAM-1_like Second immunoglobulin (Ig)-like do	89.67
PF07686	114	V-set: Immunoglobulin V-set domain; InterPro: IPR0	89.11
cd04983	109	IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V	88.01
cd04980	106	IgV_L_kappa Immunoglobulin (Ig) light chain, kappa	87.62
smart00410	86	IG_like Immunoglobulin like. IG domains that canno	87.18
smart00409	86	IG Immunoglobulin.	87.18
KOG4194|consensus	873		86.57
cd05767	94	IgC_MHC_II_alpha Class II major histocompatibility	86.06
cd05845	95	Ig2_L1-CAM_like Second immunoglobulin (Ig)-like do	85.9
cd05770	93	IgC_beta2m Class I major histocompatibility comple	85.19
cd05899	110	IgV_TCR_beta Immunoglobulin (Ig) variable (V) doma	85.11
cd05881	95	Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-	83.99
cd04982	116	IgV_TCR_gamma Immunoglobulin (Ig) variable (V) dom	83.37
cd04970	85	Ig6_Contactin_like Sixth Ig domain of contactin. I	82.02
cd07690	94	Ig1_CD4 First immunoglobulin (Ig) domain of CD4. I	81.51
cd05711	94	Ig_FcalphaRI Immunoglobulin (IG)-like domain of of	81.37
cd00098	95	IgC Immunoglobulin Constant domain. IgC: Immunoglo	80.17

>cd05773 Ig8_hNephrin_like Eighth immunoglobulin-like domain of nephrin

Probab=98.05  E-value=3e-06  Score=53.61  Aligned_cols=36  Identities=22%  Similarity=0.332  Sum_probs=30.6

Q ss_pred             eecCCeEEEecc--eEEe--ccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERS--WVHS--GEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~--~Vha--~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+|+|.|+++.+  .|.+  -.|..++|.|.+.|.|.+.+
T Consensus         1 v~~~P~~~~~~~~~~~~~~~~~g~~v~L~C~a~G~P~p~i   40 (109)
T cd05773           1 VRFAPDLQKGPQLRKVASRGDGSSDANLVCQAQGVPRVQF   40 (109)
T ss_pred             CccccccccCCceEEEEEecCCCCEEEEEEECcccCCCEE
Confidence            789999999988  5544  26789999999999999865

Ig8_hNephrin_like: domain similar to the eighth immunoglobulin-like domain in human nephrin. Nephrin is an integral component of the slit diaphragm, and is a central component of the glomerular ultrafilter. Nephrin plays a structural role, and has a role in signaling. Nephrin is a transmembrane protein having a short intracellular portion, and an extracellular portion comprised of eight Ig-like domains, and one fibronectin type III-like domain. The extracellular portions of nephrin, from neighboring foot processes of separate podocyte cells, may interact with each other, and in association with other components of the slit diaphragm, form a porous molecular sieve within the slit pore. The intracellular portion of nephrin is associated with linker proteins, which connect nephrin to the actin cytoskeleton. The intracellular portion is tyrosine phosphorylated, and mediates signaling from the slit diaphragm into the p

>cd05851 Ig3_Contactin-1 Third Ig domain of contactin-1

Probab=97.62  E-value=7.3e-05  Score=45.30  Aligned_cols=33  Identities=18%  Similarity=0.185  Sum_probs=30.6

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|.+....+.+..|..++|.|.+.+.|.|.|
T Consensus         1 ~p~i~~~~~~~~~~~G~~v~l~C~~~G~P~P~v   33 (88)
T cd05851           1 PADINVKFKDTYALKGQNVTLECFALGNPVPVI   33 (88)
T ss_pred             CCceEEccccEEEeCCCcEEEEEEecccCCCEE
Confidence            799999988888999999999999999999875

Ig3_Contactin-1: Third Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>cd05730 Ig3_NCAM-1_like Third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=97.61  E-value=4.9e-05  Score=45.69  Aligned_cols=33  Identities=24%  Similarity=0.318  Sum_probs=29.1

Q ss_pred             CCeEEEecceE--EeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWV--HSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~V--ha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|.+.++.+  .+..|..++|.|.+.|.|.|.|
T Consensus         1 pp~i~~~~~~~~~~~~~G~~v~L~C~~~g~P~p~v   35 (95)
T cd05730           1 PPTIRARQSEVNATANLGQSVTLACDADGFPEPTM   35 (95)
T ss_pred             CCccccCCcccceEEeCCCCEEEEEeccEeCCCEE
Confidence            79999988776  5688999999999999999875

Ig3_NCAM-1_like: domain similar to the third immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1,and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the

>cd05898 Ig5_KIRREL3 Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2)

Probab=97.55  E-value=0.00012  Score=46.83  Aligned_cols=31  Identities=19%  Similarity=0.339  Sum_probs=28.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ||.| ..+..+++..|+.+.|.|.+.+.|.|+
T Consensus         2 pP~i-~~~~s~~~~~G~~~~L~C~~~s~P~P~   32 (98)
T cd05898           2 PPII-SSEQVQYAVRGERGKVKCFIGSTPPPD   32 (98)
T ss_pred             CCEE-ecCceEEEeCCCcEEEEEEEccCCCCc
Confidence            8999 666688889999999999999999985

Ig5_KIRREL3: the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 protein (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1). These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development. Neph1 and 2 may mediate axonal guidance and synapse formation in certain areas of the CNS. In the kidney, they participate in the formation of the slit diaphragm.

>cd07693 Ig1_Robo First immunoglobulin (Ig)-like domain in Robo (roundabout) receptors and similar proteins

Probab=97.52  E-value=0.00011  Score=43.02  Aligned_cols=33  Identities=24%  Similarity=0.263  Sum_probs=29.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|....+.+....|+.+.|.|.+.+.|.+.|
T Consensus         1 ~P~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~i   33 (100)
T cd07693           1 PPRIVEHPSDLIVSKGDPATLNCKAEGRPTPTI   33 (100)
T ss_pred             CCeEEecCceeEEcCCCeEEEEeeCCcCCCCEE
Confidence            688888878888899999999999999999865

Ig1_Robo: domain similar to the first immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit res

>cd05758 Ig5_KIRREL3-like Fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2) and similar proteins

Probab=97.42  E-value=0.00019  Score=43.80  Aligned_cols=31  Identities=23%  Similarity=0.324  Sum_probs=26.9

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ||.|..++ .+++.+|+.++|.|.+.|.|.|.
T Consensus         2 pp~i~~~~-~~~~~~G~~v~L~C~~~g~P~P~   32 (98)
T cd05758           2 PPIITSEA-TQYAILGDKGRVECFIFSTPPPD   32 (98)
T ss_pred             CCeEcCCC-cEEEeCCCcEEEEEEEcccCCCC
Confidence            78997765 56689999999999999999984

Ig5_KIRREL3-like: domain similar to the fifth immunoglobulin (Ig)-like domain of Kirrel (kin of irregular chiasm-like) 3 (also known as Neph2). This protein has five Ig-like domains, one transmembrane domain, and a cytoplasmic tail. Included in this group is mammalian Kirrel (Neph1), Kirrel2 (Neph3), and Drosophila RST (irregular chiasm C-roughest) protein. These proteins contain multiple Ig domains, have properties of cell adhesion molecules, and are important in organ development.

>cd05771 IgC_Tapasin_R Tapasin-R immunoglobulin-like domain

Probab=97.37  E-value=0.00055  Score=44.08  Aligned_cols=50  Identities=8%  Similarity=0.030  Sum_probs=39.0

Q ss_pred             cCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |...+......+.+.|+|..||.|.+...-+....|..++|.|.+.+++.
T Consensus        18 C~~~~~~~~~~~~~~l~v~~~P~v~~~~~~~~~~~~~~~~L~C~a~g~~P   67 (139)
T cd05771          18 CSVSTPPHQAQQIIQLSVSEPPRVRLSLEKLVSMIEEPQTLICHIAGYYP   67 (139)
T ss_pred             EEEEccCcceeeEEEEEEecCCceEEeCCCceeecCCcEEEEEEECCCCC
Confidence            55544445578999999999999998765555457999999999999643

IgC_Tapasin_R: Immunoglobulin-like domain on Tapasin-R. Tapasin is a V-C1 (variable-constant) immunoglobulin superfamily molecule present in the endoplasmic reticulum (ER), where it links MHC class I molecules to the transporter associated with antigen processing (TAP). Tapasin-R is a tapasin-related protein that contains similar structural motifs to Tapasin, with some marked differences, especially in the V domain, transmembrane and cytoplasmic regions. The majority of Tapasin-R is located within the ER; however, there may be some expression of Tapasin-R at the cell surface. Tapasin-R lacks an obvious ER retention signal.

>cd05747 Ig5_Titin_like M5, fifth immunoglobulin (Ig)-like domain of human titin C terminus and similar proteins

Probab=97.25  E-value=0.00036  Score=42.01  Aligned_cols=34  Identities=24%  Similarity=0.269  Sum_probs=30.0

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|..+-+-+.+..|..++|.|.+.|+|.|.|
T Consensus         2 ~~~~~~~~p~~~~~~~G~~~~L~C~~~g~P~p~v   35 (92)
T cd05747           2 LPATILTKPRSLTVSEGESARFSCDVDGEPAPTV   35 (92)
T ss_pred             CCCcccccCccEEEeCCCcEEEEEEEeecCCCEE
Confidence            5788887777888999999999999999999865

Ig5_Titin_like: domain similar to the M5, fifth immunoglobulin (Ig)-like domain from the human titin C terminus. Titin (also called connectin) is a fibrous sarcomeric protein specifically found in vertebrate striated muscle. Titin is gigantic; depending on isoform composition it ranges from 2970 to 3700 kDa, and is of a length that spans half a sarcomere. Titin largely consists of multiple repeats of Ig-like and fibronectin type 3 (FN-III)-like domains. Titin connects the ends of myosin thick filaments to Z disks and extends along the thick filament to the H zone, and appears to function similar to an elastic band, keeping the myosin filaments centered in the sarcomere during muscle contraction or stretching.

>KOG3513|consensus

Probab=97.21  E-value=0.0004  Score=60.14  Aligned_cols=54  Identities=13%  Similarity=0.120  Sum_probs=52.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.++|+....+.++.|+|.++|......+-++...|.+++|+|-+.|.|.|.|
T Consensus       310 ~C~AeN~~G~~~~~~~v~v~a~P~w~~~~~d~~~~~gs~v~~eC~a~g~P~p~v  363 (1051)
T KOG3513|consen  310 ECIAENSRGSATHSGHVTVYAPPYWLQKPQDTEADTGSNVTLECKASGKPNPTV  363 (1051)
T ss_pred             EEEEecccccceeeEEEEEecCchhhcccceeEecCCCCeEEEEEecCCCCCce
Confidence            799999999999999999999999999999999999999999999999999986

>cd04968 Ig3_Contactin_like Third Ig domain of contactin

Probab=97.13  E-value=0.00074  Score=40.08  Aligned_cols=33  Identities=18%  Similarity=0.113  Sum_probs=27.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|......+...+|..++|.|.+.+.|.+.|
T Consensus         1 p~~~~~~p~~~~~~~g~~v~l~C~~~g~P~p~v   33 (88)
T cd04968           1 PSIIVVFPKDTYALKGQNVTLECFALGNPVPQI   33 (88)
T ss_pred             CCcEEECCCceEEeCCCcEEEEEEeeEeCCCEE
Confidence            455666666777889999999999999998865

Ig3_Contactin_like: Third Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd05870 Ig5_NCAM-2 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM)

Probab=97.12  E-value=0.00076  Score=41.10  Aligned_cols=32  Identities=25%  Similarity=0.295  Sum_probs=27.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|...++ +.+.+|..++|.|.+.+.|.|.|
T Consensus         2 ~p~i~~~~~-~~~~~G~~v~l~C~~~G~P~p~i   33 (98)
T cd05870           2 QPHIIQLKN-ETTVENGAATLSCKAEGEPIPEI   33 (98)
T ss_pred             CCEEEeecc-EEEcCCCcEEEEEecccCCCCeE
Confidence            688877665 66789999999999999999876

Ig5_NCAM-2: the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-2 (also known as OCAM/mamFas II and RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05732 Ig5_NCAM-1_like Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM) and similar proteins

Probab=97.02  E-value=0.00098  Score=39.68  Aligned_cols=32  Identities=19%  Similarity=0.254  Sum_probs=26.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|...++ +.+.+|..++|.|.+.++|.+.|
T Consensus         2 ~P~i~~~~~-~~~~~g~~v~l~C~~~g~p~p~v   33 (96)
T cd05732           2 QPKITYLEN-QTAVELEQITLTCEAEGDPIPEI   33 (96)
T ss_pred             CccceecCc-eeEecCCcEEEEEEEeEcCCCcE
Confidence            688876554 56688999999999999999875

Ig5_NCAM-1 like: domain similar to the fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-non-NCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM mole

>PF07679 I-set: Immunoglobulin I-set domain; InterPro: IPR013098 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=96.94  E-value=0.0015  Score=37.99  Aligned_cols=32  Identities=25%  Similarity=0.308  Sum_probs=28.5

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|.....-+...+|..++|.|.+.+.|.+.|
T Consensus         1 P~~~~~~~~~~v~~G~~~~l~c~~~~~p~~~v   32 (90)
T PF07679_consen    1 PVFTKKPKDVTVKEGESVTLECEVSGNPPPTV   32 (90)
T ss_dssp             EEEEEESSEEEEETTSEEEEEEEEEESSSSEE
T ss_pred             CEEEEecCCEEEeCCCEEEEEEEEEeCCCCcc
Confidence            67888888888899999999999999998865

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents I-set domains, which are found in several cell adhesion molecules, including vascular (VCAM), intercellular (ICAM), neural (NCAM) and mucosal addressin (MADCAM) cell adhesion molecules, as well as junction adhesion molecules (JAM). I-set domains are also present in several other diverse protein families, including several tyrosine-protein kinase receptors, the hemolymph protein hemolin, the muscle proteins titin, telokin, and twitchin, the neuronal adhesion molecule axonin-1 [], and the signalling molecule semaphorin 4D that is involved in axonal guidance, immune function and angiogenesis [].; PDB: 3MTR_A 2EDK_A 3DMK_B 1KOA_A 3NCM_A 2NCM_A 2V9Q_A 2CR3_A 3QQN_A 3QR2_A ....

>cd05869 Ig5_NCAM-1 Fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM)

Probab=96.59  E-value=0.0037  Score=37.95  Aligned_cols=33  Identities=15%  Similarity=0.177  Sum_probs=24.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|-|...+.-.....|..++|.|.+.+.|.|.|
T Consensus         2 ~p~i~~~~~~~~~~~g~~v~l~C~~~G~P~P~v   34 (97)
T cd05869           2 KPKITYVENQTAMELEEQITLTCEASGDPIPSI   34 (97)
T ss_pred             CceEEEccCceEEEcCCCEEEEEEeeEeCCCEE
Confidence            467765543333456899999999999999875

Ig5_NCAM-1: The fifth immunoglobulin (Ig)-like domain of Neural Cell Adhesion Molecule NCAM-1 (NCAM). NCAM plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM) and heterophilic (NCAM-non-NCAM) interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves Ig1, Ig2, and Ig3. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (tr

>cd05856 Ig2_FGFRL1-like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1)

Probab=96.54  E-value=0.0031  Score=35.90  Aligned_cols=26  Identities=23%  Similarity=0.460  Sum_probs=22.5

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.+.+.+|..++|.|.+.+.|.+.+
T Consensus         1 ~~~~~~~~G~~v~L~C~~~g~p~p~i   26 (82)
T cd05856           1 RRVIARPVGSSVRLKCVASGNPRPDI   26 (82)
T ss_pred             CcceeccCCCeEEEEEEeeEeCCCcE
Confidence            34677889999999999999999875

Ig2_FGFRL1-like: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor_like-1(FGFRL1). FGFRL1 is comprised of a signal peptide, three extracellular Ig-like modules, a transmembrane segment, and a short intracellular domain. FGFRL1 is expressed preferentially in skeletal tissues. Similar to FGF receptors, the expressed protein interacts specifically with heparin and with FGF2. FGFRL1 does not have a protein tyrosine kinase domain at its C terminus; neither does its cytoplasmic domain appear to interact with a signaling partner. It has been suggested that FGFRL1 may not have any direct signaling function, but instead acts as a decoy receptor trapping FGFs and preventing them from binding other receptors.

>cd04972 Ig_TrkABC_d4 Fourth domain (immunoglobulin-like) of Trk receptors TrkA, TrkB and TrkC

Probab=96.50  E-value=0.003  Score=37.82  Aligned_cols=26  Identities=23%  Similarity=0.282  Sum_probs=21.8

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +++.+ ..+|..++|.|.+.|+|.|.|
T Consensus         7 p~~~~-v~~G~~v~l~C~~~G~P~p~v   32 (90)
T cd04972           7 PNATV-VYEGGTATIRCTAEGSPLPKV   32 (90)
T ss_pred             CcCEE-EcCCCcEEEEEEEEEcCCCeE
Confidence            34444 688999999999999999976

TrkABC_d4: the fourth domain of Trk receptors TrkA, TrkB and TrkC, this is an immunoglobulin (Ig)-like domain which binds to neurotrophin. The Trk family of receptors are tyrosine kinase receptors. They are activated by dimerization, leading to autophosphorylation of intracellular tyrosine residues, and triggering the signal transduction pathway. TrkA, TrkB, and TrkC share significant sequence homology and domain organization. The first three domains are leucine-rich domains. The fourth and fifth domains are Ig-like domains playing a part in ligand binding. TrkA, Band C mediate the trophic effects of the neurotrophin Nerve growth factor (NGF) family. TrkA is recognized by NGF. TrKB is recognized by brain-derived neurotrophic factor (BDNF) and neurotrophin (NT)-4. TrkC is recognized by NT-3. NT-3 is promiscuous as in some cell systems it activates TrkA and TrkB receptors. TrkA is a receptor fo

>cd05762 Ig8_MLCK Eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK)

Probab=96.26  E-value=0.0067  Score=37.55  Aligned_cols=32  Identities=19%  Similarity=0.181  Sum_probs=27.0

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|...-.-+.+..|+.+.|.|.+.|.|.+.|
T Consensus         1 p~~~~~p~~~~v~~G~~v~l~C~~~G~p~p~v   32 (98)
T cd05762           1 PQIIQFPEDMKVRAGESVELFCKVTGTQPITC   32 (98)
T ss_pred             CceEECCcCEEEECCCEEEEEEEEcccCCCce
Confidence            56666666677899999999999999999876

Ig8_MLCK: the eighth immunoglobulin (Ig)-like domain of human myosin light-chain kinase (MLCK). MLCK is a key regulator of different forms of cell motility involving actin and myosin II. Agonist stimulation of smooth muscle cells increases cytosolic Ca2+, which binds calmodulin. This Ca2+-calmodulin complex in turn binds to and activates MLCK. Activated MLCK leads to the phosphorylation of the 20 kDa myosin regulatory light chain (RLC) of myosin II and the stimulation of actin-activated myosin MgATPase activity. MLCK is widely present in vertebrate tissues; it phosphorylates the 20 kDa RLC of both smooth and nonmuscle myosin II. Phosphorylation leads to the activation of the myosin motor domain and altered structural properties of myosin II. In smooth muscle MLCK it is involved in initiating contraction. In nonmuscle cells, MLCK may participate in cell division and cell motility; it has

>cd05737 Ig_Myomesin_like_C C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein

Probab=96.02  E-value=0.0085  Score=36.03  Aligned_cols=24  Identities=29%  Similarity=0.463  Sum_probs=20.9

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+...+|..++|.|.+.+.|.|.|
T Consensus        10 ~v~v~~G~~v~L~C~v~G~P~p~v   33 (92)
T cd05737          10 VVTIMEGKTLNLTCTVFGDPDPEV   33 (92)
T ss_pred             eEEEeCCCcEEEEEEEEecCCCeE
Confidence            456678999999999999999875

Ig_Myomesin_like_C: domain similar to the C-temrinal immunoglobulin (Ig)-like domain of myomesin and M-protein. Myomesin and M-protein are both structural proteins localized to the M-band, a transverse structure in the center of the sarcomere, and are candidates for M-band bridges. Both proteins are modular, consisting mainly of repetitive Ig-like and fibronectin type III (FnIII) domains. Myomesin is expressed in all types of vertebrate striated muscle; M-protein has a muscle-type specific expression pattern. Myomesin is present in both slow and fast fibers; M-protein is present only in fast fibers. It has been suggested that myomesin acts as a molecular spring with alternative splicing as a means of modifying its elasticity.

>cd04975 Ig4_SCFR_like Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR) and similar proteins

Probab=96.00  E-value=0.01  Score=37.45  Aligned_cols=26  Identities=23%  Similarity=0.222  Sum_probs=22.9

Q ss_pred             cceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      ++.+.+.+|..+.|.|.++| .|.|.|
T Consensus        10 ~~~~~v~~G~~v~L~c~v~g~~P~p~v   36 (101)
T cd04975          10 NTTIFVNLGENLNLVVEVEAYPPPPHI   36 (101)
T ss_pred             CceEEEECCCCEEEEEEEEecCCCCcc
Confidence            56788899999999999999 888865

Ig4_SCFR_like; fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR). In addition to SCFR this group also includes the fourth Ig domain of platelet-derived growth factor receptors (PDGFR), alpha and beta, the fourth Ig domain of macrophage colony stimulating factor (M-CSF), and the Ig domain of the receptor tyrosine kinase KIT. SCFR and the PDGFR alpha and beta have similar organization: an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR, this fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth SCFR_Ig-like domain abolishes

>cd05752 Ig1_FcgammaR_like Frst immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs) and similar proteins

Probab=95.85  E-value=0.012  Score=35.35  Aligned_cols=30  Identities=17%  Similarity=0.407  Sum_probs=26.6

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.|++.-+|.....|..++|.|.+.+.|.+
T Consensus         1 ~vv~~~P~~~~v~~G~~V~L~C~~~~~p~~   30 (78)
T cd05752           1 AVVSLDPPWTTIFQGEKVTLTCNGFNSPEQ   30 (78)
T ss_pred             CeEEeCCCCeEeeCCCCEEEEEeCCCCCCC
Confidence            678888888899999999999999998864

Ig1_FcgammaR_like: domain similar to the first immunoglobulin (Ig)-like domain of Fcgamma-receptors (FcgammaRs). Interactions between IgG and FcgammaR are important to the initiation of cellular and humoral response. IgG binding to FcgammaR leads to a cascade of signals and ultimately to functions such as antibody-dependent-cellular-cytotoxicity (ADCC), endocytosis, phagocytosis, release of inflammatory mediators, etc. FcgammaR has two Ig-like domains. This group also contains FcepsilonRI, which binds IgE with high affinity.

>cd05894 Ig_C5_MyBP-C C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C)

Probab=95.83  E-value=0.011  Score=35.77  Aligned_cols=25  Identities=16%  Similarity=0.158  Sum_probs=21.9

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+.+..|+.+.|.|.+.|+|.|.|
T Consensus         3 ~~~~v~~G~~v~l~c~~~G~P~P~v   27 (86)
T cd05894           3 NTIVVVAGNKLRLDVPISGEPAPTV   27 (86)
T ss_pred             CEEEEEcCCEEEEEeeEeecCCCeE
Confidence            3566789999999999999999976

Ig_C5_MyBP_C : the C5 immunoglobulin (Ig) domain of cardiac myosin binding protein C (MyBP-C). MyBP_C consists of repeated domains, Ig and fibronectin type 3, and various linkers. Three isoforms of MYBP_C exist and are included in this group: cardiac(c), and fast and slow skeletal muscle (s) MyBP_C. cMYBP_C has insertions between and inside domains and an additional cardiac-specific Ig domain at the N-terminus. For cMYBP_C an interaction has been demonstrated between this C5 domain and the Ig C8 domain.

>PF13927 Ig_3: Immunoglobulin domain; PDB: 2D3V_A 1G0X_A 1VDG_A 1P7Q_D 3D2U_H 1UFU_A 1UGN_A 3VH8_H 3OQ3_B 4DKD_C

Probab=95.81  E-value=0.0068  Score=33.12  Aligned_cols=29  Identities=28%  Similarity=0.421  Sum_probs=24.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ||.|.+..+.+.+..|. ++|.|.+.+.|.
T Consensus         1 kP~I~~~~~~~~~~~~~-~~l~C~~~~~~~   29 (75)
T PF13927_consen    1 KPQISVPPPPVVTSGGS-VTLTCSAEGGPP   29 (75)
T ss_dssp             ESEEEEESTSEEETTEE-EEEEEEESSEES
T ss_pred             CCEEEEcCCCcEeecee-EEEEEEEccccC
Confidence            69999998888876666 999999999983

...

>PF13895 Ig_2: Immunoglobulin domain; PDB: 2V5R_B 2V5M_A 2V5S_B 2GI7_A 3LAF_A 4DEP_C 3O4O_B 2EC8_A 2E9W_A 1J87_A

Probab=95.79  E-value=0.013  Score=32.58  Aligned_cols=31  Identities=26%  Similarity=0.392  Sum_probs=23.6

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|+.+...|  ..|..++|.|.+.+.|...+
T Consensus         1 kP~l~~~~~~v--~~g~~~~l~C~~~~~p~~~~   31 (80)
T PF13895_consen    1 KPVLSSSPQSV--EEGDSVTLTCSVSGNPPPQV   31 (80)
T ss_dssp             --EEEEESSEE--ETTSEEEEEEEEESSSSSEE
T ss_pred             CcEEEccceEE--eCCCcEEEEEEEEcccceee
Confidence            48888888554  56999999999999987643

...

>cd05891 Ig_M-protein_C C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2)

Probab=95.73  E-value=0.013  Score=35.62  Aligned_cols=24  Identities=29%  Similarity=0.439  Sum_probs=21.4

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|...+|+.+.|.|.+.+.|.+.+
T Consensus        10 ~v~v~eG~~v~L~C~v~g~P~p~i   33 (92)
T cd05891          10 VVTIMEGKTLNLTCTVFGNPDPEV   33 (92)
T ss_pred             cEEEcCCCEEEEEEEEEEeCCCeE
Confidence            677789999999999999998865

Ig_M-protein_C: the C-terminal immunoglobulin (Ig)-like domain of M-protein (also known as myomesin-2). M-protein is a structural protein localized to the M-band, a transverse structure in the center of the sarcomere, and is a candidate for M-band bridges. M-protein is modular consisting mainly of repetitive IG-like and fibronectin type III (FnIII) domains, and has a muscle-type specific expression pattern. M-protein is present in fast fibers.

>cd05859 Ig4_PDGFR-alpha Fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha

Probab=95.67  E-value=0.017  Score=36.30  Aligned_cols=26  Identities=15%  Similarity=0.026  Sum_probs=23.0

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.+.+.+|..+.|.|.|+|+|+|.|
T Consensus        10 ~~~~~~~~~~~~~l~~~v~g~P~P~v   35 (101)
T cd05859          10 GQLEFANLHEVKEFVVEVEAYPPPQI   35 (101)
T ss_pred             CceEEEecCCcEEEEEEEEEeCCCce
Confidence            34778889999999999999999976

IG4_PDGFR-alpha: The fourth immunoglobulin (Ig)-like domain of platelet-derived growth factor receptor (PDGFR) alpha. PDGF is a potent mitogen for connective tissue cells. PDGF-stimulated processes are mediated by three different PDGFs (PDGF-A,-B, and C). PDGFR alpha binds to all three PDGFs, whereas the PDGFR beta (not included in this group) binds only to PDGF-B. PDGF alpha is organized as an extracellular component having five Ig-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. In mice, PDGFR alpha and PDGFR beta are essential for normal development.

>PHA02785 IL-beta-binding protein; Provisional

Probab=95.65  E-value=0.031  Score=41.40  Aligned_cols=51  Identities=16%  Similarity=0.152  Sum_probs=37.7

Q ss_pred             hcCcCCCcc----ceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKE----EVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~----pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+++...    .+++.+.|.|.   .||.|..++ .+.+..|.+++|.|.+.+.|.+
T Consensus       193 ~C~~~n~~g~~~~~~t~~v~l~V~~~~~pp~~~~p~-~~~~~~G~~v~L~C~a~g~P~~  250 (326)
T PHA02785        193 TCVLKYIYGDKTYNVTRIVKLEVRDRIIPPTMQLPE-GVVTSIGSNLTIACRVSLRPPT  250 (326)
T ss_pred             EEEEEeccCCEEEeEEEEEEEEEeccCCCceecCCC-cEEecCCCcEEEEEEEECCCCC
Confidence            366665432    35667778886   588887775 5566789999999999999974

>cd05857 Ig2_FGFR Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor

Probab=95.50  E-value=0.011  Score=34.30  Aligned_cols=24  Identities=8%  Similarity=0.131  Sum_probs=20.7

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++....|..++|.|.+.|.|.+.|
T Consensus         3 ~~~v~~G~~~~L~C~~~g~P~p~i   26 (85)
T cd05857           3 LHAVPAANTVKFRCPAAGNPTPTM   26 (85)
T ss_pred             cEEcCCCCEEEEEEEcCCCCCCEE
Confidence            456688999999999999998865

Ig2_FGFR: second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three IG-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin sulfate proteoglycans.

>cd05729 Ig2_FGFR_like Second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor and similar proteins

Probab=95.35  E-value=0.017  Score=32.76  Aligned_cols=25  Identities=16%  Similarity=0.246  Sum_probs=21.7

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+.+..|..++|.|.+.+.|.+.|
T Consensus         2 ~~~~~~~G~~~~l~C~~~~~p~~~v   26 (85)
T cd05729           2 RLHAVPAGSTVRLKCPASGNPRPTI   26 (85)
T ss_pred             ceeEecCCCcEEEEEEcCCCCCCeE
Confidence            4677789999999999999998765

Ig2_FGFR_like: domain similar to the second immunoglobulin (Ig)-like domain of fibroblast growth factor (FGF) receptor. FGF receptors bind FGF signaling polypeptides. FGFs participate in multiple processes such as morphogenesis, development, and angiogenesis. FGFs bind to four FGF receptor tyrosine kinases (FGFR1, -2, -3, -4). Receptor diversity is controlled by alternative splicing producing splice variants with different ligand binding characteristics and different expression patterns. FGFRs have an extracellular region comprised of three Ig-like domains, a single transmembrane helix, and an intracellular tyrosine kinase domain. Ligand binding and specificity reside in the Ig-like domains 2 and 3, and the linker region that connects these two. FGFR activation and signaling depend on FGF-induced dimerization, a process involving cell surface heparin or heparin

>cd05749 Ig2_Tyro3_like Second immunoglobulin (Ig)-like domain of Axl/Tyro3 receptor tyrosine kinases (RTKs)

Probab=95.06  E-value=0.024  Score=34.46  Aligned_cols=23  Identities=13%  Similarity=0.234  Sum_probs=20.0

Q ss_pred             EEeccCCcEEEEEEEeeeCCC-CC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPHA-DP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~a-~V   69 (70)
                      +....|..+.|.|.++|.|.| .|
T Consensus         8 ~~v~~G~~v~l~C~a~G~P~P~~I   31 (81)
T cd05749           8 LSVTANTPFNLTCQAVGPPEPVEI   31 (81)
T ss_pred             eEEcCCCCEEEEEEeeeecCCeEE
Confidence            556779999999999999998 45

Ig2_Tyro3_like: the second immunoglobulin (Ig)-like domain in the Axl/Tyro3 family of receptor tyrosine kinases (RTKs). This family includes Axl (also known as Ark, Ufo, and Tyro7), Tyro3 (also known as Sky, Rse, Brt, Dtk, and Tif), and Mer (also known as Nyk, c-Eyk, and Tyro12). Axl/Tyro3 family receptors have an extracellular portion with two Ig-like domains followed by two fibronectin-types III (FNIII) domains, a membrane-spanning single helix, and a cytoplasmic tyrosine kinase domain. Axl, Tyro3 and Mer are widely expressed in adult tissues, though they show higher expression in the brain, in the lymphatic and vascular systems, and in the testis. Axl, Tyro3, and Mer bind the vitamin K dependent protein Gas6 with high affinity, and in doing so activate their tyrosine kinase activity. Axl/Gas6 signaling may play a part in cell adhesion processes, prevention of apoptosis, and c

>cd05728 Ig4_Contactin-2-like Fourth Ig domain of the neural cell adhesion molecule contactin-2 and similar proteins

Probab=94.99  E-value=0.025  Score=33.62  Aligned_cols=23  Identities=13%  Similarity=0.252  Sum_probs=19.9

Q ss_pred             EEeccCCcEEEEEEEeeeCCCCC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +...+|..++|.|.+.|.|.|.+
T Consensus         9 ~~~~~G~~~~l~C~~~g~p~p~v   31 (85)
T cd05728           9 TEADIGSSLRWECKASGNPRPAY   31 (85)
T ss_pred             cEEcCCCcEEEEEEeeEeCCCEE
Confidence            44568999999999999999865

Ig4_Contactin-2-like: fourth Ig domain of the neural cell adhesion molecule contactin-2. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (aliases TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. The first four Ig domains form the intermolecular binding fragment which arranges as a compact U-shaped module by contacts between Ig domains 1 and 4, and domains 2 and 3. It has been proposed that a linear zipper-like array forms, from contactin-2 molecules alternatively provided by the two apposed membranes.

>cd05848 Ig1_Contactin-5 First Ig domain of contactin-5

Probab=94.83  E-value=0.044  Score=33.46  Aligned_cols=19  Identities=16%  Similarity=0.260  Sum_probs=17.5

Q ss_pred             cCCcEEEEEEEeeeCCCCC
Q psy15736         51 EGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        51 ~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|+.++|.|.+.|.|.|.|
T Consensus        18 ~g~~v~l~C~~~G~P~P~i   36 (94)
T cd05848          18 DEKKVILNCEARGNPVPTY   36 (94)
T ss_pred             CCCEEEEEEEeeecCCCEE
Confidence            5899999999999999976

Ig1_Contactin-5: First Ig domain of the neural cell adhesion molecule contactin-5. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains, anchored to the membrane by glycosylphosphatidylinositol. The different contactins show different expression patterns in the central nervous system. In rats, a lack of contactin-5 (NB-2) results in an impairment of the neuronal activity in the auditory system. Contactin-5 is expressed specifically in the postnatal nervous system, peaking at about 3 weeks postnatal. Contactin-5 is highly expressed in the adult human brain in the occipital lobe and in the amygdala; lower levels of expression have been detected in the corpus callosum, caudate nucleus, and spinal cord.

>cd04977 Ig1_NCAM-1_like First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1 and similar proteins

Probab=94.73  E-value=0.06  Score=32.65  Aligned_cols=27  Identities=22%  Similarity=0.340  Sum_probs=21.6

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +.+..+-++...|+.+.|.|.+.+.|.
T Consensus         3 v~v~p~~~~v~~G~~~~l~C~~~G~p~   29 (92)
T cd04977           3 VDIVPSQGEISVGESKFFLCQVIGEPK   29 (92)
T ss_pred             EEEecCcEEECCCCeEEEEEEeEeeCC
Confidence            344445577889999999999999985

Ig1_NCAM-1 like: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the s

>cd05866 Ig1_NCAM-2 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2

Probab=94.68  E-value=0.062  Score=33.33  Aligned_cols=26  Identities=23%  Similarity=0.312  Sum_probs=21.3

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .++-+-+.+.+|..++|.|.+.+.|.
T Consensus         4 ~~~~~~~~v~~G~~v~l~C~~~G~P~   29 (92)
T cd05866           4 SISLSKVELSVGESKFFTCTAIGEPE   29 (92)
T ss_pred             EEEecceEEcCCCeEEEEEEEEEeCC
Confidence            34444566789999999999999997

Ig1_NCAM-2: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-2 (OCAM/mamFas II, RNCAM). NCAM-2 is organized similarly to NCAM , including five N-terminal Ig-like domains and two fibronectin type III domains. NCAM-2 is differentially expressed in the developing and mature olfactory epithelium (OE), and may function like NCAM, as an adhesion molecule.

>cd05722 Ig1_Neogenin First immunoglobulin (Ig)-like domain in neogenin and similar proteins

Probab=94.55  E-value=0.036  Score=33.26  Aligned_cols=20  Identities=25%  Similarity=0.312  Sum_probs=18.0

Q ss_pred             ccCCcEEEEEEEeeeCCCCC
Q psy15736         50 GEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..|+++.|.|.|.|.|.+.|
T Consensus        12 ~~g~~v~l~C~v~g~P~p~i   31 (95)
T cd05722          12 VRGGPVVLNCSAEGEPPPKI   31 (95)
T ss_pred             cCCCCEEEeeecccCCCCEE
Confidence            56999999999999998865

Ig1_Neogenin: first immunoglobulin (Ig)-like domain in neogenin and related proteins. Neogenin is a cell surface protein which is expressed in the developing nervous system of vertebrate embryos in the growing nerve cells. It is also expressed in other embryonic tissues, and may play a general role in developmental processes such as cell migration, cell-cell recognition, and tissue growth regulation. Included in this group is the tumor suppressor protein DCC, which is deleted in colorectal carcinoma . DCC and neogenin each have four Ig-like domains followed by six fibronectin type III domains, a transmembrane domain, and an intracellular domain.

>cd05850 Ig1_Contactin-2 First Ig domain of contactin-2

Probab=94.36  E-value=0.065  Score=32.61  Aligned_cols=18  Identities=28%  Similarity=0.311  Sum_probs=16.0

Q ss_pred             CCcEEEEEEEeeeCCCCC
Q psy15736         52 GYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        52 G~~a~L~CiV~A~P~a~V   69 (70)
                      |..++|.|.+.|.|.|.|
T Consensus        19 g~~v~l~C~a~g~P~p~i   36 (94)
T cd05850          19 EEKVTLGCRARASPPATY   36 (94)
T ss_pred             CCeEEEEeEceeCCCCEE
Confidence            468999999999999875

Ig1_Contactin-2: First Ig domain of the neural cell adhesion molecule contactin-2-like. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-2 (TAG-1, axonin-1) facilitates cell adhesion by homophilic binding between molecules in apposed membranes. It may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module by contacts between IG domains 1 and 4, and domains 2 and 3. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-2 is also expressed in retinal amacrine cells in the developing c

>cd07701 Ig1_Necl-3 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule-3 (Necl-3, also known as cell adhesion molecule 2 (CADM2))

Probab=94.06  E-value=0.055  Score=33.34  Aligned_cols=25  Identities=28%  Similarity=0.288  Sum_probs=21.6

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-+++.+|+.++|.|.+.+.|.+.|
T Consensus         5 ~~v~v~eG~~v~L~C~~~~~p~~~v   29 (95)
T cd07701           5 QNVTVVEGGTANLTCRVDQNDNTSL   29 (95)
T ss_pred             ceEEEecCCcEEEEEEEecCCceEE
Confidence            4577899999999999999998765

Ig1_Necl-3: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-3, Necl-3 (also known as cell adhesion molecule 2 (CADM2), SynCAM2, IGSF4D). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-3 accumulates in central and peripheral nervous system tissue, and has been shown to selectively interact with oligodendrocytes.

>cd05865 Ig1_NCAM-1 First immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1

Probab=93.82  E-value=0.087  Score=32.73  Aligned_cols=22  Identities=23%  Similarity=0.318  Sum_probs=18.3

Q ss_pred             EeccCCcEEEEEEEeeeCC-CCC
Q psy15736         48 HSGEGYEAQLVCIVHAEPH-ADP   69 (70)
Q Consensus        48 ha~~G~~a~L~CiV~A~P~-a~V   69 (70)
                      ...+|..++|.|.|.|.|. +.|
T Consensus        11 ~v~~G~~v~l~C~v~G~P~~p~i   33 (96)
T cd05865          11 EISVGESKFFLCQVAGEAKDKDI   33 (96)
T ss_pred             EECCCCeEEEEEEEeCCCCCCEE
Confidence            4577999999999999995 454

Ig1_NCAM-1: first immunoglobulin (Ig)-like domain of neural cell adhesion molecule NCAM-1. NCAM-1 plays important roles in the development and regeneration of the central nervous system, in synaptogenesis and neural migration. NCAM mediates cell-cell and cell-substratum recognition and adhesion via homophilic (NCAM-NCAM), and heterophilic (NCAM-nonNCAM), interactions. NCAM is expressed as three major isoforms having different intracellular extensions. The extracellular portion of NCAM has five N-terminal Ig-like domains and two fibronectin type III domains. The double zipper adhesion complex model for NCAM homophilic binding involves the Ig1, Ig2, and Ig3 domains. By this model, Ig1 and Ig2 mediate dimerization of NCAM molecules situated on the same cell surface (cis interactions), and Ig3 domains mediate interactions between NCAM molecules expressed on the surface of opposing cells (trans

>PF08205 C2-set_2: CD80-like C2-set immunoglobulin domain ; InterPro: IPR013162 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=93.26  E-value=0.1  Score=30.74  Aligned_cols=31  Identities=29%  Similarity=0.414  Sum_probs=24.0

Q ss_pred             CeEEEecceEEeccCCcEEEEE-EEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVC-IVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~C-iV~A~P~a~V   69 (70)
                      |+|+.....+... |..+.|.| ...++|+|.|
T Consensus         1 p~I~~~~~~~~~~-~~~~~~~C~s~~~~P~~~i   32 (89)
T PF08205_consen    1 PEITPNPSLLEGE-GEEVTLTCSSSGGYPPPQI   32 (89)
T ss_dssp             EEEEEECSEEESS-TEEEEEEEEEEEEBS-EEE
T ss_pred             CEeeCCCeeEccc-ceEEEEEEEeCCeECCeEE
Confidence            7899998777755 89999999 4556787764

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the C2-set type domains found in the T-cell antigen CD80, as well as in related proteins. CD80 (B7-1) is a glycoprotein expressed on antigen-presenting cells []. The shared ligands on CD80 and CD86 (B7-2) deliver the co-stimulatory signal through CD28 and CTLA-4 on T-cells, where CD28 augments the T-cell response and CTLA-4 attenuates it [].; PDB: 3S58_A 3O3U_N 3CJJ_A 3S59_A 2PF6_B 2PET_A 3ALP_A 3SKU_D 3U83_A 3U82_B ....

>cd05724 Ig2_Robo Second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors

Probab=93.18  E-value=0.073  Score=30.67  Aligned_cols=23  Identities=22%  Similarity=0.286  Sum_probs=18.9

Q ss_pred             EEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         47 VHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      +....|+.+.|.|.+ .+.|.+.|
T Consensus         6 ~~~~~G~~v~l~C~~~~g~p~p~i   29 (86)
T cd05724           6 TQVAVGEMAVLECSPPRGHPEPTV   29 (86)
T ss_pred             EEEeCCCCEEEEEECCCCCCCCEE
Confidence            444679999999998 79998865

Ig2_Robo: domain similar to the second immunoglobulin (Ig)-like domain in Robo (roundabout) receptors. Robo receptors play a role in the development of the central nervous system (CNS), and are receptors of Slit protein. Slit is a repellant secreted by the neural cells in the midline. Slit acts through Robo to prevent most neurons from crossing the midline from either side. Three mammalian Robo homologs (robo1, -2, and -3), and three mammalian Slit homologs (Slit-1,-2, -3), have been identified. Commissural axons, which cross the midline, express low levels of Robo; longitudinal axons, which avoid the midline, express high levels of Robo. robo1, -2, and -3 are expressed by commissural neurons in the vertebrate spinal cord and Slits 1, -2, -3 are expressed at the ventral midline. Robo-3 is a divergent member of the Robo family which instead of being a positive regulator of slit responsiveness, antago

>cd05882 Ig1_Necl-1 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molcule-1 (Necl-1, also known as cell adhesion molecule3 (CADM3))

Probab=92.95  E-value=0.11  Score=32.31  Aligned_cols=25  Identities=16%  Similarity=0.089  Sum_probs=21.5

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-+...+|..|.|.|.+.+.|.+.|
T Consensus         5 ~~~tv~~G~tv~L~C~v~g~~~~~v   29 (95)
T cd05882           5 QDETVAVGGTVTLKCGVKEHDNSSL   29 (95)
T ss_pred             ccEEEecCCcEEEEEEEeCCCCCeE
Confidence            4566788999999999999998865

Ig1_Necl-1: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-1, Necl-1 (also known as celll adhesion molecule 3 (CADM3), SynCAM2, IGSF4). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the format

>cd05860 Ig4_SCFR Fourth immunoglobulin (Ig)-like domain of stem cell factor receptor (SCFR)

Probab=92.88  E-value=0.15  Score=33.29  Aligned_cols=26  Identities=15%  Similarity=0.221  Sum_probs=23.5

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .++.+.+.+|..+.|.|.++|+|++.
T Consensus         9 ~~~~~~v~~gE~~~L~V~ieAYP~p~   34 (101)
T cd05860           9 INTTIFVNAGENLDLIVEYEAYPKPE   34 (101)
T ss_pred             CCceEEEECCCCEEEEEEEEeCCCCe
Confidence            46788889999999999999999985

Ig4_SCFR: The fourth Immunoglobulin (Ig)-like domain in stem cell factor receptor (SCFR). SCFR is organized as an extracellular component having five IG-like domains, a transmembrane segment, and a cytoplasmic portion having protein tyrosine kinase activity. SCFR and its ligand SCF are critical for normal hematopoiesis, mast cell development, melanocytes and gametogenesis. SCF binds to the second and third Ig-like domains of SCFR. This fourth Ig-like domain participates in SCFR dimerization, which follows ligand binding. Deletion of this fourth domain abolishes the ligand-induced dimerization of SCFR and completely inhibits signal transduction.

>cd07698 IgC_MHC_I_alpha3 Class I major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=92.68  E-value=0.2  Score=30.45  Aligned_cols=28  Identities=25%  Similarity=0.354  Sum_probs=21.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ||.|.+..+-..   |..++|.|.+.++ |+.
T Consensus         2 pP~v~v~~~~~~---~~~~~L~C~a~gF~P~~   30 (93)
T cd07698           2 PPEVRVTRKRAP---DGSLTLSCHATGFYPRD   30 (93)
T ss_pred             CCEEEEEecCCC---CCcEEEEEEEEEEeCCC
Confidence            688887765443   7889999999996 543

IgC_MHC_I_alpha3; Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class I alpha chain. Class I MHC proteins bind antigenic peptide fragments and present them to CD8+ T lymphocytes. Class I molecules consist of a transmembrane alpha chain and a small chain called the beta2 microglobulin. The alpha chain contains three extracellular domains, two of which fold together to form the peptide-binding cleft (alpha1 and alpha2), and one which has an Ig fold (alpha3). Peptide binding to class I molecules occurs in the endoplasmic reticulum (ER) and involves both chaperones and dedicated factors to assist in peptide loading. Class I MHC molecules are expressed on most nucleated cells.

>cd05849 Ig1_Contactin-1 First Ig domain of contactin-1

Probab=92.41  E-value=0.13  Score=31.52  Aligned_cols=18  Identities=17%  Similarity=0.193  Sum_probs=16.1

Q ss_pred             CCcEEEEEEEeeeCCCCC
Q psy15736         52 GYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        52 G~~a~L~CiV~A~P~a~V   69 (70)
                      |..+.|.|.+.|.|.|+|
T Consensus        19 ~~~v~l~C~a~G~P~P~i   36 (93)
T cd05849          19 EGKVSVNCRARANPFPIY   36 (93)
T ss_pred             CCeEEEeCcCccCCCCEE
Confidence            568999999999999976

Ig1_Contactin-1: First Ig domain of the neural cell adhesion molecule contactin-1. Contactins are comprised of six Ig domains followed by four fibronectin type III (FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. Contactin-1 is differentially expressed in tumor tissues and may, through a RhoA mechanism, facilitate invasion and metastasis of human lung adenocarcinoma.

>KOG3513|consensus

Probab=92.34  E-value=0.13  Score=45.06  Aligned_cols=54  Identities=13%  Similarity=0.095  Sum_probs=48.7

Q ss_pred             hcCcCCCccceeeeEEEEeecC-CeEEEe--cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL-PEIEVE--RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp-PeI~v~--~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.|+|.=..+.+...|+|+=. |.+...  +..+.+..|.++.|.|...|.|+|.+
T Consensus       402 QC~A~Nk~G~i~anA~L~V~a~~P~f~~~p~~~~~~a~~g~~v~i~C~~~asP~p~~  458 (1051)
T KOG3513|consen  402 QCIAENKYGTIYANAELKVLASAPVFPLNPVERKVMAVVGGTVTIDCKPFASPKPKV  458 (1051)
T ss_pred             EeeeecccceEeeeeEEEEEccCCCCCCCccceEEEEEeCCeEEEeeccCCCCcceE
Confidence            4999999999999999999987 777665  77889999999999999999999875

>KOG4221|consensus

Probab=92.30  E-value=0.086  Score=47.20  Aligned_cols=53  Identities=9%  Similarity=0.153  Sum_probs=47.5

Q ss_pred             cCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |-+++-.+...+...|+|+-||.|...-....+-++.++.|+|-+++.|.+.|
T Consensus       308 C~Atn~~D~idasaev~V~a~P~~~~~p~~l~A~e~~die~ec~~~g~p~p~v  360 (1381)
T KOG4221|consen  308 CRATNTNDSIDASAEVTVLAPPGFTKAPTTLVAHESMDIEFECPVSGKPIPTV  360 (1381)
T ss_pred             EEecCCCcccccceEEEEEcCCCCCCCCcceeeeeccceeEeCCCCCCCcceE
Confidence            77888778888888999999999999988888888999999999999998865

>cd05717 Ig1_Necl-1-3_like First (N-terminal) immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 - Necl-3 (also known as cell adhesion molecules CADM3, CADM1, and CADM2 respectively)

Probab=91.52  E-value=0.21  Score=29.84  Aligned_cols=25  Identities=28%  Similarity=0.243  Sum_probs=19.7

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-+...+|..++|.|.+.+.|.+.|
T Consensus         5 ~~~~v~~G~~v~L~C~~~~~~~~~v   29 (95)
T cd05717           5 QDVTVVEGGTATLKCRVKNNDNSSL   29 (95)
T ss_pred             CcEEEcCCCCEEEEEEECCCCCceE
Confidence            3456688999999999998876543

Ig1_Necl-1-3_like: N-terminal immunoglobulin (Ig)-like domain of the nectin-like molecules Necl-1 (also known as cell adhesion molecule 3 (CADM3)), Necl-2 (CADM1), and Necl-3 (CADM2). At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-1, Necl-2, and Necl-3 have Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-1 is specifically expressed in neural tissue, and is important to the form

>cd04979 Ig_Semaphorin_C Immunoglobulin (Ig)-like domain of semaphorin

Probab=91.27  E-value=0.2  Score=29.66  Aligned_cols=24  Identities=25%  Similarity=0.180  Sum_probs=19.4

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+....|+.+.|.|.+.+ |.+.+
T Consensus         4 ~~~~v~~g~~v~L~C~~~~-p~~~i   27 (89)
T cd04979           4 KVVTVVEGNSVFLECSPKS-NLASV   27 (89)
T ss_pred             eEEEEECCCcEEEEEeCCC-CCceE
Confidence            4566788999999999988 77654

Ig_Semaphorin_C; Immunoglobulin (Ig)-like domain in semaphorins. Semaphorins are transmembrane protein that have important roles in a variety of tissues. Functionally, semaphorins were initially characterized for their importance in the development of the nervous system and in axonal guidance. Later they have been found to be important for the formation and functioning of the cardiovascular, endocrine, gastrointestinal, hepatic, immune, musculoskeletal, renal, reproductive, and respiratory systems. Semaphorins function through binding to their receptors and transmembrane semaphorins also serves as receptors themselves. Although molecular mechanism of semaphorins is poorly understood, the Ig-like domains may involve in ligand binding or dimerization.

>cd05740 Ig_CEACAM_D4 Fourth immunoglobulin (Ig)-like domain of carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM)

Probab=91.12  E-value=0.23  Score=30.32  Aligned_cols=32  Identities=16%  Similarity=0.160  Sum_probs=22.8

Q ss_pred             CCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.|+..++  -....+|+.++|.|.+.+. .+.|
T Consensus         1 ~p~~~~~~~~~~~~v~~g~~v~l~C~a~g~-~p~i   34 (91)
T cd05740           1 KPVINSNNSVGNQPPEDNQPVTLTCEAEGQ-ATYI   34 (91)
T ss_pred             CCEeecccccCccccccCCcEEEEEEeCCC-CCEE
Confidence            477764443  2344579999999999998 6654

Ig_CEACAM_D4: immunoglobulin (Ig)-like domain 4 in carcinoembryonic antigen (CEA) related cell adhesion molecule (CEACAM) protein subfamily. The CEA family is a group of anchored or secreted glycoproteins, expressed by epithelial cells, leukocytes, endothelial cells and placenta. The CEA family is divided into the CEACAM and pregnancy-specific glycoprotein (PSG) subfamilies. This group represents the CEACAM subfamily. CEACAM1 has many important cellular functions, it is a cell adhesion molecule, and a signaling molecule that regulates the growth of tumor cells, it is an angiogenic factor, and is a receptor for bacterial and viral pathogens, including mouse hepatitis virus (MHV). In mice, four isoforms of CEACAM1 generated by alternative splicing have either two [D1, D4] or four [D1-D4] Ig-like domains on the cell surface. This family corresponds to the

>cd05754 Ig3_Perlecan_like Third immunoglobulin (Ig)-like domain found in Perlecan and similar proteins

Probab=90.84  E-value=0.34  Score=28.28  Aligned_cols=24  Identities=13%  Similarity=0.265  Sum_probs=18.1

Q ss_pred             eEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      .+....|..++|.|.+.+ .|.+.|
T Consensus        10 ~~~v~~G~~v~L~C~~~~~~~~~~i   34 (85)
T cd05754          10 SQEVRPGADVSFICRAKSKSPAYTL   34 (85)
T ss_pred             ceEEcCCCCEEEEEEcCCCCCCcEE
Confidence            445678999999999975 666543

Ig3_Perlecan_like: domain similar to the third immunoglobulin (Ig)-like domain found in Perlecan. Perlecan is a large multi-domain heparin sulfate proteoglycan, important in tissue development and organogenesis. Perlecan can be represented as 5 major portions; its fourth major portion (domain IV) is a tandem repeat of immunoglobulin-like domains (Ig2-Ig15), which can vary in size due to alternative splicing. Perlecan binds many cellular and extracellular ligands. Its domain IV region has many binding sites. Some of these have been mapped at the level of individual Ig-like domains, including a site restricted to the Ig5 domain for heparin/sulfatide, a site restricted to the Ig3 domain for nidogen-1 and nidogen-2, a site restricted to Ig4-5 for fibronectin, and sites restricted to Ig2 and to Ig13-15 for fibulin-2.

>PHA02826 IL-1 receptor-like protein; Provisional

Probab=90.57  E-value=0.4  Score=34.39  Aligned_cols=42  Identities=12%  Similarity=-0.019  Sum_probs=31.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEee
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      .|.+.++...+...+.|.|.-++ +     -.....|..+.|.|.+.+
T Consensus       114 ~C~a~N~~~~~~~~i~L~V~~~~-~-----~~~~~~G~~v~L~C~~~~  155 (227)
T PHA02826        114 ICTISSGNICEESTIRLTFDSGT-I-----NYQFNSGKDSKLHCYGTD  155 (227)
T ss_pred             EEEEEECCcceEEEEEEEEecCC-c-----cceEecCCCEEEEeeCCC
Confidence            47888888888899999995332 1     123457999999999863

>cd04967 Ig1_Contactin First Ig domain of contactin

Probab=90.42  E-value=0.49  Score=28.12  Aligned_cols=19  Identities=16%  Similarity=0.272  Sum_probs=16.2

Q ss_pred             cCCcEEEEEEEeeeCCCCC
Q psy15736         51 EGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        51 ~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|..+.|.|.+.+.|.|.|
T Consensus        18 ~~~~~~l~C~~~g~p~p~i   36 (91)
T cd04967          18 DEGKVSLNCRARGSPPPTY   36 (91)
T ss_pred             CCCEEEEEEeeeEcCCCEE
Confidence            4567999999999998865

Ig1_Contactin: First Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 weeks postnata

>cd05871 Ig_Semaphorin_classIII Immunoglobulin (Ig)-like domain of class III semaphorin

Probab=90.20  E-value=0.28  Score=30.06  Aligned_cols=26  Identities=27%  Similarity=0.321  Sum_probs=21.2

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.+.|+..+|+.++|.|.. ..|.+.|
T Consensus         2 ~~~~~~~~eG~~v~L~C~~-~~p~p~v   27 (91)
T cd05871           2 EEKVVYGVENNSTFLECLP-KSPQASV   27 (91)
T ss_pred             cceEEEEecCCcEEEEEEC-CCCCceE
Confidence            4568899999999999996 4787754

Ig_Semaphorin_class III; Immunoglobulin (Ig)-like domain of class III semaphorins. Semaphorins are classified into various classes on the basis of structural features additional to the Sema domain. Class III semaphorins are a vertebrate class having a Sema domain, an Ig domain, a short basic domain, and are secreted. They have been shown to be axonal guidance cues and have a part in the regulation of the cardiovascular, immune and respiratory systems. Sema3A, the prototype member of this class III subfamily, induces growth cone collapse and is an inhibitor of axonal sprouting. In perinatal rat cortex as a chemoattractant, it functions to direct, for pyramidal neurons, the orientated extension of apical dendrites. It may play a role, prior to the development of apical dendrites, in signaling the radial migration of newborn cortical neurons towards the upper layers. Sema3A selectively inhibits vascula

>cd05755 Ig2_ICAM-1_like Second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54) and similar proteins

Probab=89.67  E-value=0.38  Score=31.02  Aligned_cols=27  Identities=26%  Similarity=0.437  Sum_probs=20.5

Q ss_pred             EEEecceEEeccCCcEEEEEEEee-eCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHA-EPHAD   68 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A-~P~a~   68 (70)
                      |....+|+  .+|+..+|.|.|.+ .|.+.
T Consensus         6 l~~~p~~~--~eG~~~tL~C~v~g~~P~a~   33 (100)
T cd05755           6 LSPLPSWQ--PVGKNYTLQCDVPGVAPRQN   33 (100)
T ss_pred             EecCCCcc--cCCCcEEEEEEEcCcCCCCc
Confidence            44445666  57999999999988 67665

Ig2_ ICAM-1_like: domain similar to the second immunoglobulin (Ig)-like domain of intercellular cell adhesion molecule-1 (ICAM-1, CD54). During the inflammation process, these molecules recruit leukocytes onto the vascular endothelium before extravasation to the injured tissues. ICAM-1 may be involved in organ targeted tumor metastasis. The interaction of ICAM-1 with leukocyte function-associated antigen-1 (LFA-1) plays a part in leukocyte-endothelial cell recognition. This group also contains ICAM-2, which also interacts with LFA-1. Transmigration of immature dendritic cells across resting endothelium is dependent on the interaction of ICAM-2 with, yet unidentified, ligand(s) on the dendritic cells. ICAM-1 has five Ig-like domains and ICAM-2 has two. ICAM-1 may also act as host receptor for viruses and parasites.

>PF07686 V-set: Immunoglobulin V-set domain; InterPro: IPR013106 The basic structure of immunoglobulin (Ig) molecules is a tetramer of two light chains and two heavy chains linked by disulphide bonds

Probab=89.11  E-value=0.99  Score=26.25  Aligned_cols=24  Identities=25%  Similarity=0.259  Sum_probs=21.2

Q ss_pred             eEEEecceEEeccCCcEEEEEEEe
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVH   62 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~   62 (70)
                      .|+.+..+|.+.+|..+.|.|...
T Consensus         3 ~vt~~~~~v~~~~G~~v~L~C~~~   26 (114)
T PF07686_consen    3 QVTQPPSPVTVQEGESVTLPCSYS   26 (114)
T ss_dssp             EEEEEESEEEEETTSEEEEEEEEE
T ss_pred             eEEEeCCeEEEecCCCEEEEEEEe
Confidence            366777899999999999999998

There are two types of light chains: kappa and lambda, each composed of a constant domain (CL) and a variable domain (VL). There are five types of heavy chains: alpha, delta, epsilon, gamma and mu, all consisting of a variable domain (VH) and three (in alpha, delta and gamma) or four (in epsilon and mu) constant domains (CH1 to CH4). Ig molecules are highly modular proteins, in which the variable and constant domains have clear, conserved sequence patterns. The domains in Ig and Ig-like molecules are grouped into four types: V-set (variable; IPR013106 from INTERPRO), C1-set (constant-1; IPR003597 from INTERPRO), C2-set (constant-2; IPR008424 from INTERPRO) and I-set (intermediate; IPR013098 from INTERPRO) []. Structural studies have shown that these domains share a common core Greek-key beta-sandwich structure, with the types differing in the number of strands in the beta-sheets as well as in their sequence patterns [, ]. Immunoglobulin-like domains that are related in both sequence and structure can be found in several diverse protein families. Ig-like domains are involved in a variety of functions, including cell-cell recognition, cell-surface receptors, muscle structure and the immune system []. This entry represents the V-set domains, which are Ig-like domains resembling the antibody variable domain. V-set domains are found in diverse protein families, including immunoglobulin light and heavy chains; in several T-cell receptors such as CD2 (Cluster of Differentiation 2), CD4, CD80, and CD86; in myelin membrane adhesion molecules; in junction adhesion molecules (JAM); in tyrosine-protein kinase receptors; and in the programmed cell death protein 1 (PD1).; PDB: 1PY9_A 2NXY_D 1U9K_B 3RNK_A 3BP6_A 3BIK_B 3SBW_A 1NPU_A 3BP5_A 3RNQ_A ....

>cd04983 IgV_TCR_alpha_like Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) alpha chain and similar proteins

Probab=88.01  E-value=0.59  Score=28.11  Aligned_cols=24  Identities=17%  Similarity=0.200  Sum_probs=19.2

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +...+.+..|+.++|.|.+.+.+.
T Consensus         4 ~~~~v~~~~G~~v~L~C~~~~~~~   27 (109)
T cd04983           4 SPQSLSVQEGENVTLNCNYSTSTF   27 (109)
T ss_pred             cCCceEEcCCCCEEEEEEECCCCc
Confidence            445677899999999999987643

IgV_TCR_alpha: immunoglobulin (Ig) variable domain of the alpha chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group represents the variable domain of the alpha chain of TCRs and also includes the variable domain of delta chains of TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd04980 IgV_L_kappa Immunoglobulin (Ig) light chain, kappa type, variable (V) domain

Probab=87.62  E-value=0.94  Score=27.58  Aligned_cols=26  Identities=12%  Similarity=0.187  Sum_probs=19.8

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |+...+.+.+.+|+.++|.|.+.+.+
T Consensus         3 v~Q~p~~~~v~~G~~v~L~C~~~~~~   28 (106)
T cd04980           3 LTQSPATLSVSPGESATISCKASQSV   28 (106)
T ss_pred             EEECCCcEEECCCCCEEEEEEECCCC
Confidence            34444567779999999999997654

IgV_L_kappa: Immunoglobulin (Ig) light chain, kappa type, variable (V) domain. The basic structure of Ig molecules is a tetramer of two light chains and two heavy chains linked by disulfide bonds. In Ig, each chain is composed of one variable domain (IgV) and one or more constant domains (IgC); these names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. There are five types of heavy chains (alpha, gamma, delta, epsilon, and mu), which determine the type of immunoglobulin: IgA, IgG, IgD, IgE, and IgM, respectively. In higher vertebrates, there are two types of light chain, designated kappa and lambda, which seem to be functionally identical, and can associate with any of the heavy chains.

>smart00410 IG_like Immunoglobulin like

Probab=87.18  E-value=0.83  Score=24.37  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+....|+.++|.|.+.+.+.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~   25 (86)
T smart00410        3 SVTVKEGESVTLSCEVSGSPPPE   25 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCe
Confidence            34557899999999999875554

IG domains that cannot be classified into one of IGv1, IGc1, IGc2, IG.

>smart00409 IG Immunoglobulin

Probab=87.18  E-value=0.83  Score=24.37  Aligned_cols=23  Identities=30%  Similarity=0.446  Sum_probs=17.9

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+....|+.++|.|.+.+.+.+.
T Consensus         3 ~~~~~~g~~~~l~C~~~~~~~~~   25 (86)
T smart00409        3 SVTVKEGESVTLSCEVSGSPPPE   25 (86)
T ss_pred             cEEEeCCCeEEEEEEEccCCCCe
Confidence            34557899999999999875554

>KOG4194|consensus

Probab=86.57  E-value=0.68  Score=39.86  Aligned_cols=47  Identities=13%  Similarity=0.210  Sum_probs=40.3

Q ss_pred             ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         23 KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        23 ~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |..-+...+|.|+-.|..+--..-..-..|+-|.|+|...|+|+|++
T Consensus       598 GStysqk~KltV~~~PsFtktP~dltl~tg~mArl~CaAtG~P~PeI  644 (873)
T KOG4194|consen  598 GSTYSQKAKLTVNQAPSFTKTPEDLTLRTGQMARLECAATGHPRPEI  644 (873)
T ss_pred             CcchhheeEEEeeccCccccCcccceeecccceeeeeeccCCCCcce
Confidence            55667889999999999887766666677999999999999999976

>cd05767 IgC_MHC_II_alpha Class II major histocompatibility complex (MHC) alpha chain immunoglobulin domain

Probab=86.06  E-value=1.8  Score=27.11  Aligned_cols=30  Identities=27%  Similarity=0.322  Sum_probs=20.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      ||.+.+-..- ....|..++|.|.|.+ +|+.
T Consensus         1 ~P~V~v~~~~-~~~~~~~~tL~C~a~gFyP~~   31 (94)
T cd05767           1 PPEVTVFSLK-PVELGEPNTLICFVDNFFPPV   31 (94)
T ss_pred             CCEEEEEeCC-cccCCCCeEEEEEEEEEECCc
Confidence            5777665332 2245677899999999 5654

IgC_MHC_II_alpha: Immunoglobulin (Ig) domain of major histocompatibility complex (MHC) class II alpha chain. MHC class II molecules play a key role in the initiation of the antigen-specific immune reponse. In both humans and in mice these molecules have been shown to be expressed constitutively on the cell surface of professional antigen-presenting cells (APCs), for example on B-lymphocytes, monocytes, and macrophages. The expression of these molecules has been shown to be induced in nonprofessional APCs such as keratinocyctes, and they are expressed on the surface of activated human T cells and on T cells from other species. The MHC II molecules present antigenic peptides to CD4(+) T-lymphocytes. These peptides derive mostly from protelytic processing via the endocytic pathway, of antigens internalized by the APC. These peptides bind to the MHC class II molecules in the endosom

>cd05845 Ig2_L1-CAM_like Second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM) and similar proteins

Probab=85.90  E-value=0.58  Score=29.85  Aligned_cols=26  Identities=19%  Similarity=0.059  Sum_probs=22.8

Q ss_pred             cceEEeccCCcEEEEEE-EeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCI-VHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~Ci-V~A~P~a~V   69 (70)
                      ++.|.+.+|+.+.|.|. ..++|.+.|
T Consensus        10 ~~~v~V~eG~~~~L~C~pP~g~P~P~i   36 (95)
T cd05845          10 IRPVEVEEGDSVVLPCNPPKSAVPLRI   36 (95)
T ss_pred             cceeEEecCCCEEEEecCCCCCCCCEE
Confidence            57788899999999997 699999875

Ig2_L1-CAM_like: domain similar to the second immunoglobulin (Ig)-like domain of the L1 cell adhesion molecule (CAM). L1 belongs to the L1 subfamily of cell adhesion molecules (CAMs) and is comprised of an extracellular region having six Ig-like domains, five fibronectin type III domains, a transmembrane region and an intracellular domain. L1 is primarily expressed in the nervous system and is involved in its development and function. L1 is associated with an X-linked recessive disorder, X-linked hydrocephalus, MASA syndrome, or spastic paraplegia type 1, that involves abnormalities of axonal growth.

>cd05770 IgC_beta2m Class I major histocompatibility complex (MHC) beta2-microglobulin

Probab=85.19  E-value=1.9  Score=27.03  Aligned_cols=29  Identities=28%  Similarity=0.416  Sum_probs=20.9

Q ss_pred             CCeEEEe-cceEEeccCCcEEEEEEEee-eCCC
Q psy15736         37 LPEIEVE-RSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        37 pPeI~v~-~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      ||.+.|- +..  ...|..++|.|.|.+ +|+.
T Consensus         1 pP~v~v~~~~~--~~~g~~~~L~C~a~gFyP~~   31 (93)
T cd05770           1 TPKVQVYSRFP--AENGKPNVLNCYVTGFHPPD   31 (93)
T ss_pred             CCEEEEEecCC--CcCCCceEEEEEEEEEeCCC
Confidence            6888885 333  345788899999999 5554

IgC_beta2m: Immunoglobulin-like domain in beta2-Microglobulin (beta2m). Beta2m is the non-covalently bound light chain of the human class I major histocompatibility complex (MHC-I). Beta2m is structured as a beta-sandwich domain composed of two facing beta-sheets (four stranded and three stranded), that is typical of the C-type immunoglobulin superfamily. This structure is stabilized by an intramolecular disulfide bridge connecting two Cys residues in the facing beta -sheets. In vivo, MHC-I continuously exposes beta2m on the cell surface, where it may be released to plasmatic fluids, transported to the kidneys, degraded and then excreted.

>cd05899 IgV_TCR_beta Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) bet a chain

Probab=85.11  E-value=1.1  Score=27.47  Aligned_cols=21  Identities=19%  Similarity=0.415  Sum_probs=17.7

Q ss_pred             ecceEEeccCCcEEEEEEEee
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      ....+.+.+|..++|.|.+.+
T Consensus         4 ~p~~~~v~~G~~v~l~C~~~~   24 (110)
T cd05899           4 SPRYLIKGRGQSVTLRCSQTS   24 (110)
T ss_pred             CCCceEEcCCCcEEEEEEECC
Confidence            345677889999999999987

IgV_TCR_beta: immunoglobulin (Ig) variable domain of the beta chain of alpha/beta T-cell antigen receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are composed of alpha and beta, or gamma and delta, polypeptide chains with variable (V) and constant (C) regions. This group includes the variable domain of the alpha chain of alpha/beta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. The variable domain of TCRs is responsible for antigen recognition, and is located at the N-terminus of the receptor. Gamma/delta TCRs recognize intact protein antigens; they recognize proteins antigens directly and without antigen processing, and MHC independently of the bound peptide.

>cd05881 Ig1_Necl-2 First (N-terminal) immunoglobulin (Ig)-like domain of nectin-like molecule 2 (also known as cell adhesion molecule 1 (CADM1))

Probab=83.99  E-value=1.1  Score=28.39  Aligned_cols=21  Identities=29%  Similarity=0.235  Sum_probs=17.9

Q ss_pred             ceEEeccCCcEEEEEEEeeeC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +-|...+|+.|+|.|.|....
T Consensus         5 ~nvtv~~G~ta~L~C~v~~~~   25 (95)
T cd05881           5 EDVTVVEGEVAIISCRVKNND   25 (95)
T ss_pred             CceEEcCCCcEEEEEEEccCC
Confidence            457789999999999999864

Ig1_Necl-2: domain similar to the N-terminal immunoglobulin (Ig)-like domain of nectin-like molecule-2, Necl-2 (also known as cell adhesion molecule 1 (CADM1), SynCAM1, IGSF4A, Tslc1, sgIGSF, and RA175). Nectin-like molecules have similar domain structures to those of nectins. At least five nectin-like molecules have been identified (Necl-1 - Necl-5). They all have an extracellular region containing three Ig-like domains, a transmembrane region, and a cytoplasmic region. The N-terminal Ig-like domain of the extracellular region, belongs to the V-type subfamily of Ig domains, is essential to cell-cell adhesion, and plays a part in the interaction with the envelope glycoprotein D of various viruses. Necl-2 has Ca(2+)-independent homophilic and heterophilic cell-cell adhesion activity. Necl-2 is expressed in a wide variety of tissues, and is a

>cd04982 IgV_TCR_gamma Immunoglobulin (Ig) variable (V) domain of T-cell receptor (TCR) gamma chain

Probab=83.37  E-value=1.2  Score=27.37  Aligned_cols=20  Identities=15%  Similarity=0.252  Sum_probs=17.2

Q ss_pred             cceEEeccCCcEEEEEEEee
Q psy15736         44 RSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A   63 (70)
                      ...+.+.+|..++|.|.+..
T Consensus         5 p~~~~~~~G~~v~l~C~~~~   24 (116)
T cd04982           5 QLSITREESKSVTISCKVSG   24 (116)
T ss_pred             CCeEEeCCCCCEEEEEEEeC
Confidence            45777889999999999977

IgV_TCR_gamma: immunoglobulin (Ig) variable (V) domain of the gamma chain of gamma/delta T-cell receptors (TCRs). TCRs mediate antigen recognition by T lymphocytes, and are heterodimers consisting of alpha and beta chains or gamma and delta chains. Each chain contains a variable (V) and a constant (C) region. The majority of T cells contain alpha/beta TCRs but a small subset contain gamma/delta TCRs. Alpha/beta TCRs recognize antigen as peptide fragments presented by major histocompatibility complex (MHC) molecules. Gamma/delta TCRs recognize intact protein antigens; they recognize protein antigens directly and without antigen processing, and MHC independently of the bound peptide. Gamma/delta T cells can also be stimulated by non-peptide antigens such as small phosphate- or amine-containing compounds. The variable domain of gamma/delta TCRs is responsible for antigen recognition and is

>cd04970 Ig6_Contactin_like Sixth Ig domain of contactin

Probab=82.02  E-value=1.3  Score=25.84  Aligned_cols=23  Identities=4%  Similarity=-0.012  Sum_probs=20.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLP   38 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypP   38 (70)
                      .|.+++....+++...|.|..||
T Consensus        63 ~C~a~n~~g~~~~~~~l~V~~pP   85 (85)
T cd04970          63 TCTAQTVVDSLSASADLIVRGPP   85 (85)
T ss_pred             EEEEecCCCcEEEEEEEEEECCC
Confidence            48889988899999999999998

Ig6_Contactin_like: Sixth Ig domain of contactins. Contactins are neural cell adhesion molecules and are comprised of six Ig domains followed by four fibronectin type III(FnIII) domains anchored to the membrane by glycosylphosphatidylinositol. The first four Ig domains form the intermolecular binding fragment, which arranges as a compact U-shaped module via contacts between Ig domains 1 and 4, and between Ig domains 2 and 3. Contactin-2 (TAG-1, axonin-1) may play a part in the neuronal processes of neurite outgrowth, axon guidance and fasciculation, and neuronal migration. This group also includes contactin-1 and contactin-5. The different contactins show different expression patterns in the central nervous system. During development and in adulthood, contactin-2 is transiently expressed in subsets of central and peripheral neurons. Contactin-5 is expressed specifically in the rat postnatal nervous system, peaking at about 3 week

>cd07690 Ig1_CD4 First immunoglobulin (Ig) domain of CD4

Probab=81.51  E-value=1.5  Score=27.50  Aligned_cols=23  Identities=22%  Similarity=0.281  Sum_probs=18.9

Q ss_pred             EEeccCCcEEEEEEEeeeCCCCC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |-+.+|.+|+|.|...+.|.+.+
T Consensus         2 v~~~~G~~VtL~C~~s~~~~~~i   24 (94)
T cd07690           2 VLGKKGDTAELPCTASQKKSIQF   24 (94)
T ss_pred             eEeeCCCCEEEEEEeCCCCCcEE
Confidence            56788999999999988776543

Ig1_CD4; first immunoglobulin (Ig) domain of CD4. CD4 and CD8 are the two primary co-receptor proteins found on the surface of T cells, and the presence of either CD4 or CD8 determines the function of the T cell. CD4 is found on helper T cells, where it is required for the binding of MHC (major histocompatibility complex) class II molecules, while CD8 is found on cytotoxic T cells, where it is required for the binding of MHC class I molecules. CD4 contains four immunoglobulin domains, with the first three included in this hierarchy. The fourth domain has a general Ig architecture, but has slight topological changes in the arrangement of beta strands relative to the other structures in this family and is not specifically included in the hierarchy.

>cd05711 Ig_FcalphaRI Immunoglobulin (IG)-like domain of of FcalphaRI

Probab=81.37  E-value=1.9  Score=26.33  Aligned_cols=25  Identities=24%  Similarity=0.262  Sum_probs=20.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEe
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVH   62 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~   62 (70)
                      +|.|+.+.+.|-+ .|.+++|.|...
T Consensus         1 kP~l~a~p~~vV~-~G~~VTL~C~~~   25 (94)
T cd05711           1 KPFLSAHPSPVVP-SGENVTLQCHSD   25 (94)
T ss_pred             CCEEEecCCCccC-CCCeEEEEEecC
Confidence            5889998877774 699999999654

IG_FcalphaRI : immunoglobulin (IG)-like domain of of FcalphaRI. FcalphaRI (CD89) is an IgA-specific receptor that is expressed on monocytes, eosinophils, neutrophils and macrophages. FcalphaRI mediates IgA-induced immune effector responses such as phagocytosis, antibody-dependent cell-mediated cytotoxicity and respiratory burst. Both monomeric and dimeric IgA can bind to FcalphaRI, and monomeric or dimeric IgA immune complexes can activate phagocytosis and other immune responses through the clustering of FcalphaRI. The Fc RI ectodomain is comprised of two Ig-like domains oriented at about 90 degree to each another.

>cd00098 IgC Immunoglobulin Constant domain

Probab=80.17  E-value=2.2  Score=24.90  Aligned_cols=17  Identities=24%  Similarity=0.333  Sum_probs=14.6

Q ss_pred             ccCCcEEEEEEEeee-CC
Q psy15736         50 GEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~-P~   66 (70)
                      ..|..++|.|.+.++ |.
T Consensus        11 ~~~~~~~L~C~a~g~~P~   28 (95)
T cd00098          11 LLGGSVTLTCLATGFYPP   28 (95)
T ss_pred             HcCCCeEEEEEEeeEECC
Confidence            358999999999998 64

IgC: Immunoglobulin constant domain (IgC). Members of the IgC family are components of immunoglobulin, T-cell receptors, CD1 cell surface glycoproteins, secretory glycoproteins A/C, and Major Histocompatibility Complex (MHC) class I/II molecules. In immunoglobulins, each chain is composed of one variable domain (IgV) and one or more IgC domains. These names reflect the fact that the variability in sequences is higher in the variable domain than in the constant domain. The IgV domain is responsible for antigen binding, and the IgC domain is involved in oligomerization and molecular interactions.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	70
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	98.39
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	98.37
2cry_A	122	KIN of IRRE-like protein 3; IG fold, KIN of irregu	98.34
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	98.29
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	98.22
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	98.19
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	98.19
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	98.17
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	98.12
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	98.12
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	98.11
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	98.1
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	98.09
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	98.09
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	98.06
3kvq_A	108	Vascular endothelial growth factor receptor 2; veg	98.02
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	97.97
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	97.96
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	97.96
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	97.96
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	97.95
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	97.93
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	97.93
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	97.91
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	97.91
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	97.89
2yr3_A	99	Myosin light chain kinase, smooth muscle; IG domai	97.87
3qp3_A	103	Titin; I-SET IG-like, sarcomere, M-BAND, transfera	97.84
3b43_A	570	Titin; I-SET IG fold, extended poly-IG filament, e	97.84
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	97.84
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.83
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.83
1fhg_A	154	Telokin; immunoglobulin fold, beta barrel, contrac	97.83
2v9t_A	117	Roundabout homolog 1; structural protein-receptor	97.82
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.8
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	97.79
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	97.79
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	97.78
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	97.77
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.76
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	97.76
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.76
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	97.73
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	97.73
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	97.72
2kdg_A	100	Myotilin; immonoglobulin domain, actin-binding, st	97.72
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.71
2rik_A	284	Titin; I-SET IG fold, poly-IG linear array, struct	97.71
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.7
2e7c_A	118	Myosin-binding protein C, fast-type; IG-like domai	97.67
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	97.66
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	97.64
1qz1_A	291	Neural cell adhesion molecule 1, 140 kDa isoform;	97.64
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	97.61
3qs7_E	423	FL cytokine receptor; immunoglobulin-like domain,	97.61
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	97.58
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.57
2dm3_A	110	KIAA0992 protein, palladin; beta-sandwich, myopall	97.57
2edh_A	113	Obscurin; structural genomics, NPPSFA, national pr	97.56
2yd9_A	304	Receptor-type tyrosine-protein phosphatase S; hydr	97.56
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.55
1wit_A	93	Twitchin 18TH IGSF module; immunoglobulin superfam	97.51
3knb_A	100	Titin; IG-like, titin, OBSL1, ATP-binding, calmodu	97.49
1u2h_A	99	APEG-1, aortic preferentially expressed protein 1;	97.49
2ec8_A	524	MAST/stem cell growth factor receptor; glycoprotei	97.48
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	97.48
3puc_A	99	Titin; I-SET IG-like domain, M-BAND, transferase;	97.47
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	97.47
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	97.44
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	97.43
2r15_A	212	Myomesin-1; sarcomeric protein, IG-like domains, h	97.4
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	97.4
1wwb_X	103	Protein (brain derived neurotrophic factor recepto	97.38
3irg_A	100	Titin; IG-like, titin, OBSL1, complex, alternative	97.35
1wwc_A	118	Protein (NT-3 growth factor receptor TRKC); TRK re	97.35
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	97.34
1z7z_I	450	Intercellular adhesion molecule-1; ICAM-1,kilifi,C	97.32
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	97.32
1g1c_A	99	Immunoglobulin-like domain I1 from titin; immunogl	97.28
2cr6_A	115	KIAA1556 protein, obscurin; IG-fold, immunoglobuli	97.28
3so5_A	112	LIG-3, leucine-rich repeats and immunoglobulin-lik	97.28
3knb_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, AT	97.27
3d9a_H	210	Heavy chain of hyhel10 antibody fragment (FAB); ly	97.27
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	97.27
1nct_A	106	Titin; cell adhesion, glycoprotein, transmembrane,	97.23
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	97.23
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	97.22
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	97.22
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	97.2
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	97.2
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	97.2
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	97.18
3umt_A	256	SCFV heavy chain and light chain; stability engine	97.16
3lcy_A	197	Titin; A-BAND, IG tandem domains, ATP-binding, cal	97.16
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	97.14
3mtr_A	215	N-CAM-1, NCAM-1, neural cell adhesion molecule 1;	97.13
3qr2_A	137	Basigin; CD147, EMMPRIN, immunoglobulin-like domai	97.13
3irg_B	107	Obscurin-like protein 1; IG-like, titin, OBSL1, co	97.12
2edj_A	100	Roundabout homolog 2; KIAA1568 protein, beta sandw	97.12
3eow_R	221	Poliovirus receptor; immunoglobulin super family,	97.12
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	97.11
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	97.11
3dmk_A	816	DOWN syndrome cell adhesion molecule (dscam) ISOF	97.11
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	97.11
2wim_A	291	N-CAM 2, NCAM2, neural cell adhesion molecule 2; c	97.11
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	97.08
2cqv_A	114	MLCK, myosin light chain kinase, smooth muscle and	97.08
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	97.08
1c5d_H	215	Monoclonal antibody against the main immunogenic t	97.07
1pz5_B	220	Heavy chain of FAB (SYA/J6); antibody-antigen stru	97.06
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	97.05
3ejj_X	289	Macrophage colony-stimulating factor 1 receptor; g	97.03
1q9r_B	222	S25-2 FAB (IGG1K) heavy chain; antigen-binding fra	97.02
3laf_A	403	Deleted in colorectal cancer; netrin-1 receptor, i	97.02
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	97.02
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	97.01
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	97.01
2dm2_A	110	Palladin; beta-sandwich, KIAA0992, actin-associate	97.01
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	97.0
2ocw_A	585	Polymeric-immunoglobulin receptor; SC, secretory,	97.0
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	97.0
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	96.99
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	96.95
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	96.94
3u83_A	331	Poliovirus receptor-related protein 1; nectin-1, h	96.94
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	96.94
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.93
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	96.93
2o26_X	290	MAST/stem cell growth factor receptor; stem cell f	96.92
3bae_H	228	WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO	96.91
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	96.91
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	96.88
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	96.87
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	96.87
3bfo_A	91	Mucosa-associated lymphoid tissue lymphoma translo	96.84
1dee_B	223	IGM RF 2A2; FAB-IBP complex 2.7A resolution bindin	96.83
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	96.82
2oz4_A	265	Intercellular adhesion molecule 1; IGSF domain, st	96.82
2yd6_A	212	PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sa	96.81
1e07_A	642	Carcinoembryonic antigen; glycoprotein, CEA, tumou	96.8
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	96.8
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	96.78
2xot_A	361	Amphoterin-induced protein 1; cell adhesion, neuro	96.77
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	96.77
3v2a_R	772	Vascular endothelial growth factor receptor 2; IG-	96.76
4dkd_C	292	Macrophage colony-stimulating factor 1 receptor; d	96.75
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	96.74
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	96.73
2wng_A	327	Tyrosine-protein phosphatase non-receptor type sub	96.72
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	96.72
2iep_A	192	Muscle-specific kinase receptor; beta-sandwich, si	96.69
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	96.69
2v9r_A	212	Roundabout homolog 1; proto-oncogene, differentiat	96.67
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	96.66
1dr9_A	201	B7-1 (CD80), T lymphocyte activation antigen; IG s	96.65
2lvc_A	91	Obscurin-like protein 1; structural genomics, nort	96.65
3qs9_E	527	FL cytokine receptor; immunoglobulin-like domain,	96.64
2xzc_L	216	FAB A.17 light chain; immune system; HET: XOP; 1.3	96.63
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	96.62
1ry7_B	334	FGFR-3, fibroblast growth factor receptor 3; FGF-F	96.62
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	96.61
3nl4_H	215	Antigen binding fragment,immunoglobulin IGG - HEA;	96.6
2e7b_A	103	Obscurin; IG-like domain, structural genomics, NPP	96.58
2eo9_A	118	Roundabout homolog 1; beta-sandwich, IG-fold, H-RO	96.58
1hng_A	176	CD2; T lymphocyte adhesion glycoprotein; 2.80A {Ra	96.56
2edf_A	103	Obscurin; beta-sandwich, IG-fold, structural genom	96.55
2yd1_A	212	Tyrosine-protein phosphatase LAR; hydrolase; 1.80A	96.54
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	96.53
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	96.52
1he7_A	126	High affinity nerve growth factor receptor; transf	96.51
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	96.48
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	96.48
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	96.48
2j8h_A	197	Titin, connectin; cardiomyopathy, nuclear protein,	96.47
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	96.46
2ens_A	96	Advanced glycosylation END product-specific recept	96.43
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	96.41
3liz_H	253	4C3 monoclonal antibody heavy chain; hydrolase-imm	96.41
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	96.4
2edk_A	101	Myosin-binding protein C, fast-type; IG fold, fast	96.4
1za6_B	344	IGG heavy chain; immunoglobulin fold, CH2-domain-d	96.4
2va4_A	192	NCAM2, N-CAM 2, neural cell adhesion molecule 2; t	96.39
1iam_A	185	ICAM-1, CD54, intercellular adhesion molecule-1; r	96.38
2a38_A	194	Titin; Z1Z2, structural protein; 2.00A {Homo sapie	96.38
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	96.36
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	96.35
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	96.35
3caf_A	100	Fibroblast growth factor receptor 2; FGFR2, D2, AT	96.34
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	96.33
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	96.31
1igy_B	434	IGG1 intact antibody MAB61.1.3; intact immunoglobu	96.29
2vr9_A	217	Roundabout 1, ROBO; immunoglobulin-like domain, AX	96.28
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	96.28
2rcj_C	523	Light chain; immunoglobulin M, polymeric antibodie	96.28
3m45_A	108	Cell adhesion molecule 2; IG fold, dimer, disulfid	96.27
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	96.26
1bih_A	395	Hemolin; insect immunity, LPS-binding, homophilic	96.25
2kkq_A	116	Myotilin; unknown function, actin-binding, cell me	96.25
4i0k_A	222	CD276 antigen; immunoglobulin domain, glycoprotein	96.24
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	96.24
1qok_A	282	MFE-23 recombinant antibody fragment; immunoglobul	96.24
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	96.23
2c1o_A	254	IGK-C protein; FAB fragment, enantioselective, fin	96.21
3cx2_A	108	Myosin-binding protein C, cardiac-type; protonatio	96.21
2zg1_A	214	Sialic acid-binding IG-like lectin 5; siglec-5 inh	96.2
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	96.2
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	96.11
3oq3_B	329	IFN-alpha/beta binding protein C12R; mousepox viru	96.11
3sob_L	237	Antibody light chain; beta propeller, protein bind	96.07
3p3y_A	404	Neurofascin; IG domains, cell adhesion; HET: NAG;	96.07
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	96.06
3ux9_B	256	SCFV antibody; five helices, long loop connecting	96.04
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	96.04
2ckn_A	95	Basic fibroblast growth factor receptor 1; kinase,	96.03
2nzi_A	305	Titin; IG-domain, FNIII-domain, transferase; 2.90A	96.02
2xqy_G	261	A13-D6.3 monoclonal antibody, envelope glycoprotei	96.02
2wv3_A	190	Neuroplastin; igcam, membrane, glycoprotein, cell	96.0
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	95.97
2dku_A	103	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	95.97
2c5d_C	195	AXL oncogene, tyrosine-protein kinase receptor UFO	95.96
1fnl_A	175	Low affinity immunoglobulin gamma FC region recept	95.94
1gl4_B	98	Basement membrane-specific heparan sulfate proteog	95.93
2ifg_A	347	High affinity nerve growth factor receptor; TRK, T	95.92
2e6p_A	104	Obscurin-like protein 1; IG-like domain, structura	95.91
2aty_A	376	Complement receptor chimeric conjugate CR2-IG; imm	95.9
4fqp_A	313	Poliovirus receptor; immunoglobulin-like domain, I	95.82
2v5m_A	388	Dscam; neurobiology SPL immunoglobulin domain, cel	95.82
1dn0_B	232	IGM-kappa cold agglutinin (heavy chain); FAB, anti	95.77
3qhz_H	232	Human monoclonal antibody DEL2D1, FAB heavy chain;	95.75
1qgc_4	438	Protein (immunoglobulin); virus-antibody complex,	95.72
1hzh_H	457	IGG, immunoglobulin heavy chain; antibody, immune	95.71
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	95.71
2if7_A	193	SLAM family member 6; NTB-A, homophilic receptor,	95.71
2dlt_A	106	Myosin binding protein C, fast-type; IG-like domai	95.7
4acp_A	240	IG gamma-1 chain C region; immune system, antibody	95.7
1waa_A	93	Titin; metal binding protein, calmodulin-binding,	95.67
2bk8_A	97	Connectin, M1, titin heart isoform N2-B; IG domain	95.66
2y23_A	312	Myomesin; structural protein, sarcomere, M-BAND, i	95.6
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	95.58
2gki_A	291	Nuclease; anti-DNA antibody, catalytic antibody, i	95.58
1f97_A	212	Junction adhesion molecule; immunoglobulin superfa	95.57
1rhf_A	182	Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3	95.56
2eny_A	104	Obscurin; beta-sandwich, IG-fold, structural genom	95.56
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	95.55
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	95.51
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	95.49
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	95.48
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	95.47
1igt_B	444	IGG2A intact antibody - MAB231; intact immunoglobu	95.44
2yuv_A	100	Myosin-binding protein C, SLOW-type; SLOW-type myo	95.44
3kld_A	384	Contactin 4, axcam, BIG-2; cell adhesion, protein	95.43
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	95.43
1x44_A	103	Myosin-binding protein C, SLOW-type; IG-like domai	95.43
3o4o_C	339	Interleukin-1 receptor type 2; cytokine-receptor c	95.42
1cs6_A	382	Axonin-1; neural cell adhesion, cell adhesion; 1.8	95.42
2j6e_L	234	IGM, FAB light chain; autoimmune complex human IGM	95.42
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	95.42
4dep_C	349	Interleukin-1 receptor accessory protein; B-trefoi	95.39
1bec_A	238	14.3.D T cell antigen receptor; T cell receptor; 1	95.39
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	95.38
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	95.37
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	95.34
2dm7_A	108	KIAA1556 protein; beta-sandwich, IG-fold, obscurin	95.29
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	95.27
3nl4_L	213	Antigen binding fragment, immunoglobulin IGG - LI;	95.19
2k1m_A	95	Myosin-binding protein C, cardiac-type; IG-I domai	95.18
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	95.18
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	95.18
3rjd_A	262	High affinity immunoglobulin gamma FC receptor I;	95.16
3r06_A	213	Anti-mouse CD3epsilon antibody 2C11 FAB light CHA;	95.15
3o3u_N	581	Maltose-binding periplasmic protein, advanced Gly	95.13
1jhl_L	108	IGG1-kappa D11.15 FV (light chain); complex(antibo	95.1
4f80_A	226	Butyrophilin subfamily 3 member A1; B7 superfamily	95.09
2v5t_A	189	NCAM2, N-CAM 2, neural cell adhesion molecule 2; p	95.08
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	95.04
3bn9_D	257	E2 FAB heavy chain; antibody-protease complex, pro	95.02
2jll_A	389	NCAM2, neural cell adhesion molecule 2; immunoglob	95.02
1epf_A	191	NCAM, protein (neural cell adhesion molecule); imm	94.97
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	94.94
1wio_A	363	CD4, T-cell surface glycoprotein CD4; immunoglobul	94.92
3ry4_A	170	Low affinity immunoglobulin gamma FC region recep;	94.89
1iga_A	475	IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg	94.88
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	94.88
3bn3_B	196	ICAM-5, intercellular adhesion molecule 5, telence	94.84
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	94.82
1pd6_A	104	Cardiac MYBP-C;, myosin-binding protein C, cardiac	94.82
1ccz_A	171	Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.8	94.8
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	94.79
2q20_A	109	VK1 O18/O8 germline light chain variable domain; A	94.76
2yuz_A	100	Myosin-binding protein C, SLOW-type; immunoglobuli	94.68
3m8o_H	221	Immunoglobulin A1 heavy chain; immunoglobulin fold	94.68
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	94.67
3sgj_C	204	Human FCG3A receptor; receptor complex, FC recepto	94.64
3ojm_B	231	Fibroblast growth factor receptor 2; beta trefoil	94.62
1itb_B	315	Type 1 interleukin-1 receptor; immunoglobulin fold	94.6
3vh8_G	316	Killer cell immunoglobulin-like receptor 3DL1; imm	94.53
2gi7_A	184	GPVI protein; IG-like domains, blood clotting, cel	94.48
1f2q_A	176	High affinity immunoglobulin epsilon receptor ALP	94.41
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	94.4
3k0w_A	218	Mucosa-associated lymphoid tissue lymphoma translo	94.35
1nbq_A	209	JAM, junctional adhesion molecule 1, PAM-1; reovir	94.3
2cpc_A	113	KIAA0657 protein; immunoglobulin domain, IG domain	94.26
3mj8_L	213	Stimulatory hamster antibody HL4E10 FAB light CHA;	94.26
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	94.24
1z9m_A	145	GAPA225; nectin-like, IG-like domain, V domain, ce	94.24
2v5y_A	731	Receptor-type tyrosine-protein phosphatase MU; mem	94.17
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	94.16
3mjg_X	289	Beta-type platelet-derived growth factor receptor;	94.09
3u2s_H	248	PG9 heavy chain; greek KEY, immunoglobulin, immune	94.06
3rbs_A	207	Myomesin-1; immunoglobulin C-SET domain, contractI	94.05
2lu7_A	84	Obscurin-like protein 1; structural genomics, nort	94.05
3s96_B	218	3B5H10 FAB light chain; huntingtin, immune system;	94.05
3n9g_H	230	FAB fragment of MAB CR4354, heavy chain; human neu	94.03
3fku_X	280	Neutralizing antibody F10; influenza, hemagglutini	94.02
1qfw_M	108	FV, antibody (anti beta subunit) (light chain); gl	93.94
1vca_A	202	VCAM-D1,2, human vascular cell adhesion molecule-1	93.93
4fom_A	308	Poliovirus receptor-related protein 3; immunoglobu	93.87
3mlr_H	226	Human monoclonal anti-HIV-1 GP120 V3 antibody 255	93.84
3d9a_L	213	Light chain of hyhel10 antibody fragment (FAB); ly	93.81
2e27_L	119	Anti-ciguatoxin antibody, light chain; immunoglobu	93.81
3omz_A	259	Human vdelta1 gamma delta T cell receptor delta1A;	93.8
1lk2_B	99	Beta-2-microglobulin; class I MHC-peptide complex,	93.76
2y25_A	317	Myomesin; structural protein, sarcomere, M-BAND, i	93.71
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	93.69
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	93.66
1i8k_A	107	Epidermal growth factor receptor antibody MR1SCFV	93.65
1hnf_A	182	CD2; T lymphocyte adhesion glycoprotein; HET: NAG;	93.64
1mq8_A	291	ICAM-1, intercellular adhesion molecule-1, CD54 an	93.64
1gxe_A	139	Myosin binding protein C, cardiac-type; cytoskelet	93.63
1k5n_B	100	Beta-2-microglobulin, light chain; MHC(major histo	93.56
3tv3_H	239	PGT128 heavy chain, IG gamma-1 chain C region; FAB	93.54
1oga_E	252	TRBC1, T-cell receptor beta chain C region; immune	93.52
2dru_A	180	Chimera of CD48 antigen and T-cell surface antige;	93.5
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	93.49
1ugn_A	198	LIR1, leukocyte immunoglobulin-like receptor 1; im	93.45
3esu_F	250	Antibody 14B7* light chain and antibody 14B7* heav	93.44
2d3v_A	196	Leukocyte immunoglobulin-like receptor subfamily A	93.41
3sob_L	237	Antibody light chain; beta propeller, protein bind	93.27
1mqk_L	120	Antibody 7E2 FV fragment, light chain; membrane pr	93.26
2vsd_A	105	CHIR AB1; immune system receptor, FC receptor; HET	93.21
3p2t_A	196	Leukocyte immunoglobulin-like receptor subfamily 4	93.2
2znx_A	242	SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, s	93.2
2ywz_A	111	NEW antigen receptor variable domain; IG VNAR, imm	93.08
1i3g_L	111	Antibody FV fragment; antibiotic; 2.44A {Mus muscu	93.04
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	93.03
4dzb_B	246	Vbeta2 (MAIT T cell receptor); immune system; 1.70	92.99
3nfj_J	245	T cell receptor beta chain; immunoglobulin family,	92.97
3rbg_A	124	Cytotoxic and regulatory T-cell molecule; IGV, crt	92.92
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	92.92
3f8u_B	401	Tapasin; endoplasmic reticulum, glycoprotein, immu	92.67
1eaj_A	126	Coxsackie virus and adenovirus receptor; virus/vir	92.44
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	92.33
1bii_B	119	Beta-2 microglobulin, MHC class I H-2DD; complex (	92.3
3auv_A	276	SC-DSFV derived from the G6-FAB; SC-DSFV (disulfid	92.27
4ffy_L	126	DENV1-E111 single chain variable fragment (light;	92.26
4frw_A	218	Poliovirus receptor-related protein 4; immunoglobu	92.16
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	92.09
4gos_A	125	V-SET domain-containing T-cell activation inhibit;	92.05
2rgs_A	218	I, IG gamma-2B heavy chain; FC-fragment, immunoglo	92.04
2ghw_B	247	Anti-SARS SCFV antibody, 80R; S protein, neutraliz	91.98
1oll_A	188	NK receptor; immune system/receptor, NK cell trigg	91.95
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	91.9
3sob_H	256	Antibody heavy chain, low-density lipoprotein rece	91.87
2yz1_A	120	Tyrosine-protein phosphatase non-receptor type sub	91.81
1ntl_A	551	CRRY-IG; immunology, complement, glycoprotein, SCR	91.76
3tf7_C	256	42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE;	91.75
3bp6_B	202	Programmed cell death 1 ligand 2; PD-1, PD-L2, com	91.71
3bqu_C	233	3H6 FAB light chain; beta sheet, immune system; 3.	91.68
3grw_A	241	Fibroblast growth factor receptor 3; FGFR3, protei	91.61
1l6x_A	207	Immunoglobulin gamma-1 heavy chain constant regio;	91.59
2fbo_J	250	V1V2;, variable region-containing chitin-binding p	91.52
1lk3_L	210	9D7 light chain; antigen-antibody complex, immune	91.48
3p73_B	99	Beta-2-microglobulin; IG-like C1-type (immunoglobu	91.39
2wqr_A	323	IG epsilon chain C region; immune system, immunogl	91.38
2v44_A	189	NCAM2, neural cell adhesion molecule 2; phosphoryl	91.35
2e6q_A	112	Obscurin-like protein 1; IG-like domain, structura	91.24
1sq2_N	113	Novel antigen receptor; immunoglobulin fold, prote	91.22
3zyj_A	440	Leucine-rich repeat-containing protein 4C; cell ad	91.04
1uct_A	218	Immunoglobulin alpha FC receptor; beta stands, imm	90.99
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	90.97
2dav_A	126	SLOW MYBP-C, myosin-binding protein C, SLOW-type;	90.86
1moe_A	240	Anti-CEA MAB T84.66; anti carcinoembryonic antigen	90.85
3sbw_C	222	Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-	90.82
3bkj_L	252	WO2 IGG2A FAB fragment light chain kappa; abeta, F	90.79
1pko_A	139	Myelin oligodendrocyte glycoprotein; IGV-domain, i	90.73
2id5_A	477	Lingo-1, leucine rich repeat neuronal 6A; CNS-spec	90.62
3iu4_H	263	CHP3 FAB heavy chain; antibody, ganglioside, idiot	90.55
2ny1_B	184	T-cell surface glycoprotein CD4; HIV, GP120, CD4,	90.52
3juy_B	256	3B3 single chain variant HIV-1 antibody; envelope	90.47
1j05_L	111	T84.66 antibody, anti-CEA MAB T84.66, light chain;	90.41
2wbj_D	279	OB TCR; transmembrane, immune response, T cell rec	90.33
1b6u_A	257	KIR2DL3, P58 killer cell inhibitory receptor; natu	90.25
1eeq_A	114	Kappa-4 immunoglobulin (light chain); protein stab	90.08
2coq_A	108	NEW antigen receptor variable domain; IG VNAR, nat	90.05
2eo1_A	102	OBSCN protein, cDNA FLJ14124 FIS, clone mamma10024	89.96
2yc1_B	146	Single chain antibody fragment 9004G; immune syste	89.92
1h5b_A	113	Murine T cell receptor (TCR) valpha domain; immune	89.76
1nkr_A	201	P58-CL42 KIR; inhibitory receptor, natural killer	89.71
1svz_A	247	Immunoglobulin;, single-chain FV fragment 1696; an	89.64
3pv7_A	248	B7-H6, IG-like domain-containing protein DKFZP686O	89.63
1nez_G	128	T-cell surface glycoprotein CD8 alpha chain; immun	89.6
2edn_A	118	Myosin-binding protein C, fast-type; beta-sandwich	89.59
3o81_A	119	Beta-2-microglobulin; IG-like C1-type (immunoglobu	89.47
1ypz_F	230	T-cell receptor gamma chain, beta-2-microglobulin;	89.47
2p1y_A	238	Bispecific alpha/beta TCR; autoimmunity, immunoglo	89.44
2jju_A	127	Signal regulatory protein beta-1; immunoglobulin d	89.4
2gjj_A	264	A21 single-chain antibody fragment against ERBB2;	89.28
1i1c_A	239	IGG2A, IG gamma-2A chain C region; FC, immune syst	89.04
3jts_B	119	Beta-2-microglobulin; alpha helix, beta sheet, bet	88.99
3jz7_A	214	MCAR, CAR, coxsackievirus and adenovirus receptor	88.94
1hxm_B	242	Gamma-delta T-cell receptor; IG domain, TCR, GDTCR	88.85
2x1w_L	213	Vascular endothelial growth factor receptor 2; hor	88.78
3udw_C	118	Poliovirus receptor; PVR tigit IGSF signal transdu	88.73
1x9q_A	268	SCFV, 4M5.3 anti-fluorescein single chain antibody	88.55
3moq_A	126	NEW antigen receptor variable domain, P3(40) PEPT	88.52
3r4d_A	208	CEA-related cell adhesion molecule 1, isoform 1/2;	88.48
3tv3_L	211	PGT128 light chain, IG lambda-2 chain C regions; F	88.33
1zxq_A	192	ICAM-2, intercellular adhesion molecule-2; immunog	88.25
1xt5_A	135	Variable region-containing chitin-binding protein	88.22
1q0x_L	212	FAB 9B1, light chain; anti-morphine antibody, FAB	88.14
1jbj_A	186	CD3 epsilon and gamma ectodomain fragment complex;	88.06
4ei6_B	245	Vbeta16 XV19 type II natural killer T cell recept	88.05
1dlf_L	113	Anti-dansyl immunoglobulin IGG2A(S); FV fragment;	87.88
2d9c_A	136	Signal-regulatory protein beta-1; beta-sandwich, S	87.86
4hwn_A	108	FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG	87.77
4fmk_A	225	Poliovirus receptor-related protein 2; immunoglobu	87.53
3q5y_A	240	TCR N15 beta; IG, T cell receptor, antigen peptide	87.38
3umt_A	256	SCFV heavy chain and light chain; stability engine	87.31
1f3r_B	257	FV antibody fragment; IG-fold, immuno complex, ant	87.1
4gjt_B	123	Poliovirus receptor-related protein 4; six-bladed	87.03
4fa8_A	203	Secreted protein BARF1; immunoglobulin-like domain	86.97
1p6f_A	242	NKP46, natural cytotoxicity triggering receptor 1;	86.91
1gsm_A	210	Madcam-1, mucosal addressin cell adhesion molecule	86.8
3gbl_A	97	BETA2-microglobulin; immune response, immunoglobul	86.78
2z35_A	112	T-cell receptor alpha-chain; immune receptor, immu	86.76
2vol_A	207	Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry,	86.72
1nfd_E	212	H57 FAB; complex (immunoreceptor-immunoglobulin),	86.71
1sy6_A	204	T-cell surface glycoprotein CD3 gamma/epsilon chai	86.67
3c5j_B	190	MHC class II antigen; HLA, MHC class II, glycoprot	86.6
3u1s_H	267	FAB PGT145 heavy chain; IGG, broadly neutralizing	86.45
2w59_A	231	IGY FCU3-4; immunoglobulin, avian, immune system;	86.42
1u3h_A	110	T-cell receptor alpha-chain; complex, immune syste	86.25
1uvq_B	198	HLA class II histocompatibility antigen; immunolog	86.14
1fo0_B	112	Protein (BM3.3 T cell receptor beta-chain); class	86.12
1zvo_C	512	Myeloma immunoglobulin D delta; immunoglobulin fol	85.76
2cr3_A	99	Basic fibroblast growth factor receptor 1; IG fold	85.54
2bnu_A	203	TCR alpha chain, T-cell receptor alpha chain C reg	85.51
3ux9_B	256	SCFV antibody; five helices, long loop connecting	85.39
1oaq_L	120	Light chain; antibody, allergy, IGE, conformationa	85.35
3gkz_A	257	Anti-methamphetamine single chain FV; therapeutic	85.35
3b5h_A	184	Cervical EMMPRIN, HAB18G/CD147; IG-like domain, ce	84.99
3c5j_A	181	HLA class II histocompatibility antigen, DR alpha;	84.57
3s97_C	201	Contactin-1; carbonic anhdyrase like immunoglobuli	84.44
3s6c_A	392	Beta-2-microglobulin, T-cell surface glycoprotein	84.41
2bc4_B	211	HLA class II histocompatibility antigen, DM beta c	84.38
2fbj_H	220	IGA-kappa J539 FAB (heavy chain); immunoglobulin;	84.21
3r0n_A	128	Poliovirus receptor-related protein 2; IG-domain,	84.19
3to4_D	253	NKT vbeta2 (mouse variable domain, human constant;	84.19
1op3_H	225	FAB 2G12, heavy chain; domain-swapped FAB 2G12, an	84.0
3khq_A	133	B-cell antigen receptor complex-associated protei	83.88
1tvd_A	116	T cell receptor, ES204 V delta; immunoreceptor, TC	83.44
3qib_D	270	2B4 beta chain; IG domain, immune system; HET: NAG	83.44
3uto_A	573	Twitchin; kinase, muscle sarcomere, transferase; H	83.4
3t0v_A	123	Immunoglobulin variable lambda domain; immunoglobu	83.35
1k5n_A	276	Major histocompatibility complex molecule HLA-B*2;	83.28
3mj6_A	268	Junctional adhesion molecule-like; immunoglobulin	83.25
1ow0_A	214	IG alpha-1 chain C region; IGA1, fcari, CD89, anti	83.21
1n4x_H	120	Immunoglobulin heavy chain variable region; immune	83.17
1a2y_B	116	IGG1-kappa D1.3 FV (heavy chain); complex (immunog	83.04
1p4b_L	135	Antibody variable light chain; FV antibody, antige	83.01
1lp9_E	194	T-cell receptor alpha chain; immunoregulatory comp	82.9
2oyp_A	109	Hepatitis A virus cellular receptor 2; TIM-3, T-ce	82.8
3kgr_A	106	LAIR-1, hlair1, leukocyte-associated immunoglobuli	82.79
1ncn_A	110	T lymphocyte activation antigen CD86; IG V, beta s	82.49
1fo0_A	116	Protein (BM3.3 T cell receptor alpha-chain); class	82.49
3u6r_L	143	Antibody 1:7 (light chain); IG-like domain, neutra	82.47
1c1e_H	219	Catalytic antibody 1E9 (heavy chain); diels-alder,	82.33
1nqb_A	256	Single-chain antibody fragment; multivalent antibo	82.32
3r08_E	82	T-cell surface glycoprotein CD3 epsilon chain; ant	82.29
3q0h_A	117	T cell immunoreceptor with IG and ITIM domains; im	82.17
2i24_N	121	NEW antigen receptor PBLA8; immunoglobulin fold, i	81.98
1mju_H	227	Immunoglobulin MS6-12; catalytic antibody, ester h	81.81
3b9v_A	120	Heavy chain variable domain; antibody engineering,	81.78
2atp_B	115	T-cell surface glycoprotein CD8 beta chain; CD8AB,	81.77
1uvq_A	197	HLA class II histocompatibility antigen; immunolog	81.58
3uzq_A	253	Anti-dengue MAB 4E11; dengue antibody neutralizati	81.46
3s35_X	122	Vascular endothelial growth factor receptor 2; ant	81.39
1onq_A	283	T-cell surface glycoprotein CD1A; protein-glycolip	81.34
1pew_A	109	JTO2, A lambda-6 type immunoglobulin light chain,	81.24
3pl6_D	268	MBP peptide / T-cell receptor beta chain chimera;	81.22
3r8b_B	125	G5-8, enterotoxin type B; immunoglobulin-like, OB-	81.17
2ak4_D	211	SB27 T cell receptor alpha chain; bulged epitopes,	80.83
2xt1_B	121	Camelid VHH 9; viral protein-immune system complex	80.76
2yc1_A	117	Single chain antibody fragment 9004G; immune syste	80.67
1j05_H	121	T84.66 antibody, anti-CEA MAB T84.66, heavy chain;	80.52
3zyi_A	452	Leucine-rich repeat-containing protein 4; cell adh	80.43
3tpk_A	136	Immunoglobulin heavy chain antibody variable DOMA;	80.27
2pet_A	231	Lutheran blood group glycoprotein; immunoglobulin	80.07

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=98.39  E-value=2.3e-07  Score=61.43  Aligned_cols=54  Identities=15%  Similarity=0.113  Sum_probs=49.8

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+....++..+.|.|..||.+....+.+...+|..++|.|.+.|.|.|.|
T Consensus        85 ~C~a~n~~g~~~~~~~l~V~~p~~~~~~~~~~~v~~g~~~~l~C~~~G~P~P~v  138 (203)
T 4fa8_A           85 LCRMKLGETEVTKQEHLSVVKPLTLSVHSERSQFPDFSVLTVTCTVNAFPHPHV  138 (203)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEEEEEEECCSSCSCCEEEEEEEEEESCCEE
T ss_pred             EEEEEcCCCcEEEEEEEEecCCceeeecceeEEEcCCCEEEEEEEcCCCCCCEE
Confidence            488888888899999999999999999988888899999999999999999975

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=98.37  E-value=7.7e-07  Score=55.36  Aligned_cols=53  Identities=17%  Similarity=0.164  Sum_probs=47.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+. ...+..+.|.|.++|.|......+....|..++|.|.+.+.|.+.|
T Consensus        72 ~C~~~n~-~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i  124 (190)
T 2wv3_A           72 HCVYHFV-SAPKANATIEVKAAPDITGHKRSENKNEGQDAMMYCKSVGYPHPEW  124 (190)
T ss_dssp             EEEEEET-TEEEEEEEEEEECCCEEEEECSEEEEETTSCEEEEEEEECSSCCEE
T ss_pred             EEEEEeC-CcccccEEEEEecCCcccccCCcceeeCCCcEEEEEEeCccCCCce
Confidence            4777777 6788999999999999999887788899999999999999998864

>2cry_A KIN of IRRE-like protein 3; IG fold, KIN of irregular chiasm-like protein 3, nephrin- like 2, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.1

Probab=98.34  E-value=5.3e-08  Score=58.46  Aligned_cols=42  Identities=19%  Similarity=0.291  Sum_probs=38.0

Q ss_pred             eeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         26 VRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        26 vs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ..+.+.|+|++||.|.. ...+.+.+|..+.|.|.+.+.|.|.
T Consensus         3 ~~~~~~l~V~~~P~i~~-~~~~~~~~G~~v~l~C~~~g~P~p~   44 (122)
T 2cry_A            3 SGSSGTLTVNGPPIISS-TQTQHALHGEKGQIKCFIRSTPPPD   44 (122)
T ss_dssp             SSCCCCCCCCSSCCEEE-ECCCCCCTTSCCCCCEEECCSSCCS
T ss_pred             cceEEEEEEecCCCccC-CCeEEEecCCCEEEEEEEeecCCCc
Confidence            45788999999999999 6778889999999999999999986

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=98.29  E-value=1.4e-06  Score=53.48  Aligned_cols=52  Identities=17%  Similarity=0.139  Sum_probs=45.1

Q ss_pred             hcCcCCC-ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+. +...+..+.|.|.++|.|......+....|..++|.|.+.+.|.+
T Consensus        76 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p  128 (182)
T 1rhf_A           76 WCQVEDGGETEISQPVWLTVEGVPFFTVEPKDLAVPPNAPFQLSCEAVGPPEP  128 (182)
T ss_dssp             EEEESSCTTCEECCCEEEEEECSCEEEECCCCEEECTTCCEEEEEEEECSSSC
T ss_pred             EEEEEcCCCcEEEEEEEEEEecCCeEEecCcceEecCCCEEEEEeEecCCCCC
Confidence            4777766 345778999999999999998777888999999999999999988

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=98.22  E-value=9.1e-07  Score=60.06  Aligned_cols=54  Identities=17%  Similarity=0.178  Sum_probs=48.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+....+++.+.|+|.++|.|..+...+.+..|..+.|.|.+.+.|.+.|
T Consensus        79 ~C~a~n~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i  132 (389)
T 2jll_A           79 DCEAASRIGGHQKSMYLDIEYAPKFISNQTIYYSWEGNPINISCDVKSNPPASI  132 (389)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECCSCCEEEECTTCCEEEEECEEEESCCEE
T ss_pred             EEEEEeCCCCcceEEEEEEEeCCEEecCcceEEeccCCEEEEEEEEEecCCCeE
Confidence            488888877889999999999999998888778899999999999999998764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=98.19  E-value=2.4e-06  Score=57.99  Aligned_cols=54  Identities=7%  Similarity=-0.051  Sum_probs=48.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.+||.+....+.+....|..++|.|.+.+.|.+.|
T Consensus       286 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  339 (388)
T 2v5m_A          286 LCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV  339 (388)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEEEEESSEEEECTTSCEEEEEEEEEECCCEE
T ss_pred             EEEEecCCCceeEEEEEEEeCCCccccCCCcEEecCCCCEEEEEEeccccCCeE
Confidence            588888888889999999999999998888888899999999999999998864

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=98.19  E-value=1.3e-06  Score=56.94  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=48.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.+||.|......+....|..++|.|.+.+.|.+.|
T Consensus       171 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v  224 (284)
T 2rik_A          171 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV  224 (284)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCBCCSCCCCEEECTTCCEEEEEECBSSSCCEE
T ss_pred             EEEEEcCCCceeEEEEEEEecCCcceeCCCcceecCCCeEEEEEEEEecCCCEE
Confidence            477888878889999999999999998877788899999999999999998764

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=98.17  E-value=1.9e-06  Score=58.35  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=48.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|.|.++|.|......+....|..++|.|.+.+.|.+.|
T Consensus       291 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v  344 (404)
T 3p3y_A          291 FCLASNKMGSIRHTISVRVKAAPYWLDEPKNLILAPGEDGRLVCRANGNPKPTV  344 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEE
T ss_pred             EEEEEeCCCcEEEEEEEEEeCCCeeeccCCcceeecCCcEEEEEEccccCCCce
Confidence            488888888899999999999999998877788889999999999999998865

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=98.12  E-value=3.8e-06  Score=52.21  Aligned_cols=54  Identities=15%  Similarity=0.046  Sum_probs=43.9

Q ss_pred             hcCcCCCcc-ceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC-CC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA-DP   69 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a-~V   69 (70)
                      .|.+.+... ..+..+.|.|.++|.|......+....|..++|.|.+.+.|.+ .|
T Consensus        84 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~~v  139 (195)
T 2c5d_C           84 QCLVFLGHQTFVSQPGYVGLEGLPYFLEEPEDRTVAANTPFNLSCQAQGPPEPVDL  139 (195)
T ss_dssp             EEEEEETTEEEECCCEEEEECCSCEEEECCCCEEECTTCCEEEEEEEECSSCCCEE
T ss_pred             EEEEEeCCCceecccEEEEEecCCeEEcCCCcEEEcCCCEEEEEeECCCCCCCCEE
Confidence            466666544 3455599999999999988777788899999999999999988 54

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=98.12  E-value=4.1e-06  Score=56.77  Aligned_cols=54  Identities=13%  Similarity=0.191  Sum_probs=45.2

Q ss_pred             hcCcCCCcccee-eeEEEEeecCCeEEEecce-EEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVR-RRRRRNQKNLPEIEVERSW-VHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs-~~I~L~V~ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+...... ..+.|.|.++|.|.....- +....|..++|.|.+.+.|.+.|
T Consensus       286 ~C~a~n~~g~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  341 (395)
T 1bih_A          286 TCEVDNGVGKPQKHSLKLTVVSAPKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV  341 (395)
T ss_dssp             EEEECCSSSSCEEEEEEEEEEEEEEEEECCCSEEEECTTSCEEEECEEEEESCCCC
T ss_pred             EEEEEeCCCCceEEEEEEEEEcCCccccCCCcceEecCCCeEEEEEEECcccCCee
Confidence            477777655544 4999999999999987554 77789999999999999999876

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=98.11  E-value=2.2e-06  Score=52.84  Aligned_cols=51  Identities=24%  Similarity=0.178  Sum_probs=42.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeC-CCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP-HADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P-~a~V   69 (70)
                      .|.+.+   ..+..+.|+|+|+|.|...........|..++|.|.+.+.| .+.|
T Consensus        65 ~C~~~n---~~~~~~~l~V~~~P~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~~i  116 (184)
T 3b5h_A           65 SCVFLP---EPMGTANIQLHGPPRVKAVKSSEHINEGETAMLVCKSESVPPVTDW  116 (184)
T ss_dssp             EEEEES---TTSCEEEEEECCSCCCEESCSEEEECTTSCEEEEEECCCSSCCCEE
T ss_pred             EEEEEC---CcCcEEEEEEecCCceeecCCCcEEcCCCcEEEEEEECCCCCCCeE
Confidence            366665   23478999999999999998888889999999999999999 5654

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=98.10  E-value=1.9e-06  Score=58.53  Aligned_cols=54  Identities=13%  Similarity=0.065  Sum_probs=49.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|.|.+||.+....+.+....|..++|.|.+.+.|.+.|
T Consensus       291 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v  344 (403)
T 3laf_A          291 TCVVTYKNENISASAELTVLVPPWFLNHPSNLYAYESMDIEFECAVSGKPVPTV  344 (403)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEECCTTCCEEECCEEEEESCCEE
T ss_pred             EEEEEcCCCceEEEEEEEEECCCcEeecCcceEEecCCeEEEEEEEeeccCCEE
Confidence            488888888899999999999999999888888999999999999999999864

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=98.09  E-value=3.2e-06  Score=52.03  Aligned_cols=54  Identities=11%  Similarity=-0.021  Sum_probs=46.7

Q ss_pred             hcCcCCCc-cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDK-EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~-~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.. ...++.+.|.|.++|.+......+....|..++|.|.+.+.|.+.|
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  132 (191)
T 1epf_A           78 KCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI  132 (191)
T ss_dssp             EEEEEETTTEEEEEEEEEEEECCSEEEECCSSEECCTTSCEEECCEEECSSCCEE
T ss_pred             EEEEEcCCCcceEEEEEEEeecCceEecCCCcEeecCCCeEEEEEEECCCCCCEE
Confidence            46666654 6788999999999999998887888899999999999999998864

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=98.09  E-value=2.3e-06  Score=52.90  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=45.8

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec-----ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER-----SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~-----~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.++|.+..+.     ..+....|..++|.|.+.+.|.+.|
T Consensus        78 ~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i  136 (197)
T 2j8h_A           78 QVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI  136 (197)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEECCSSCBTTBEEEEEETTCCCEEEEEEEEESCCEE
T ss_pred             EEEEEECCCceeEEEEEEEcCCCcCCCCccccccCeEEEeCCCEEEEEEEEEecCCCcE
Confidence            47777777778999999999999997765     4566788999999999999998864

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=98.06  E-value=4.5e-06  Score=61.24  Aligned_cols=54  Identities=15%  Similarity=0.171  Sum_probs=49.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.|....++..+.|.|.+||.+......+.+..|..++|.|.+.+.|.+.|
T Consensus       363 ~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~v  416 (570)
T 3b43_A          363 TCEAHNAAGSASSSTSLKVKEPPVFRKKPHPVETLKGADVHLECELQGTPPFQV  416 (570)
T ss_dssp             EEEEEBTTBCCEEEEEECEECCCEECSCCCCEEECTTCCEEEEEEEESSSSCCC
T ss_pred             EEEEEeCCCEEEEEEEEEecCCCeeecCCCceeecCCCEEEEEEEEecCCCCEE
Confidence            588899988999999999999999998877888899999999999999999876

>3kvq_A Vascular endothelial growth factor receptor 2; vegfr2, angiogenesis, ATP-binding, developmental protein, differentiation, glycoprotein; 2.70A {Homo sapiens} SCOP: b.1.1.0

Probab=98.02  E-value=1e-06  Score=50.89  Aligned_cols=42  Identities=14%  Similarity=0.190  Sum_probs=26.1

Q ss_pred             eeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         28 RRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        28 ~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +++.|.|.++|.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         1 ~~~~v~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i   42 (108)
T 3kvq_A            1 RQLTVLERVAPTITGNLENQTTSIGESIEVSCTASGNPPPQI   42 (108)
T ss_dssp             ----------CCCBSCCCCEEEETTCCEEEECBCC----CCE
T ss_pred             CceeECccCCCceecCCCCeEEeCCCeEEEEEECcCcCCCeE
Confidence            467899999999999988899999999999999999998865

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=97.97  E-value=8.5e-06  Score=50.03  Aligned_cols=54  Identities=11%  Similarity=0.052  Sum_probs=46.8

Q ss_pred             hcCcCCCccceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+........+.|.|.   +||.|......+....|..++|.|.+.+.|.+.|
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  135 (194)
T 2a38_A           79 SLKATNGSGQATSTAELLVKAETAPPNFVQRLQSMTVRQGSQVRLQVRVTGIPTPVV  135 (194)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCEEEEEEECCCCEEECTTEEEEEEEEEEEESCCEE
T ss_pred             EEEEEcCCceEeEEEEEEEccCCCCCEEEeCCccEEEcCCCEEEEEEEEEEecCCeE
Confidence            47777777777888899998   8999998888888899999999999999998864

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=97.96  E-value=7.3e-06  Score=54.70  Aligned_cols=53  Identities=15%  Similarity=0.117  Sum_probs=40.1

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEec-ceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVER-SWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      -|.+++.  ..+.+..+.|.|+|||.|.+.. +......|..++|.|.+.|.|.|.
T Consensus       193 ~C~a~n~~~~~~~~~~~~l~V~~~P~v~~~~~~~~~~~~g~~v~l~C~~~g~P~p~  248 (313)
T 4fqp_A          193 TCKVEHESFEKPQLLTVNLTVYYPPEVSISGYDNNWYLGQNEATLTCDARSNPEPT  248 (313)
T ss_dssp             EEEEECTTSSSCEEEEEECCBCEEEEEEEECCCSCEETTCCCEEEEEEEEEESCCC
T ss_pred             EEEEEccCcCccceeeeecccccCCccccccccceeecCCCeEEEEEEecCCCCCc
Confidence            3666654  3456778899999999998763 333345688999999999999883

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=97.96  E-value=4.6e-06  Score=55.38  Aligned_cols=53  Identities=17%  Similarity=0.187  Sum_probs=45.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec-ceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER-SWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      -|.+.+.....++.+.|+|.|+|.|.+.. +......|..++|.|.+.+.|.+.
T Consensus       210 ~C~a~n~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~  263 (331)
T 3u83_A          210 ACIVNYHMDRFKESLTLNVQYEPEVTIEGFDGNWYLQRMDVKLTCKADANPPAT  263 (331)
T ss_dssp             EEEEEETTEEEEEEEECCEEEEEEEEEECCCSCCBTTCCCEEEEEEEEEESCCC
T ss_pred             EEEEecCCCcceeeEEEEEecCCeEEEecCCCceEeCCCeEEEEEeCcCCCCCC
Confidence            48888888889999999999999998654 334467899999999999999986

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=97.95  E-value=1.1e-05  Score=51.00  Aligned_cols=54  Identities=15%  Similarity=0.078  Sum_probs=45.8

Q ss_pred             hcCcCCCccc-eeeeEEEEeecC-------CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKNL-------PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~yp-------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.... .+..+.|.|.++       |.|....+.+....|..++|.|.+.+.|.+.|
T Consensus        81 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i  142 (212)
T 2yd1_A           81 ECVAENGVGDAVSADATLTIYEGDKTPAGFPVITQGPGTRVIEVGHTVLMTCKAIGNPTPNI  142 (212)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECTTCSCTTCCEEEECCCCEEEETTCCEEECCEEECSSCCEE
T ss_pred             EEEEEeCCCCeEEeeEEEEEecccCCCCCCCeeEeCCCceEeecCCeEEEEEEeccCCCCeE
Confidence            4777766555 889999999998       88988877778889999999999999998864

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=97.93  E-value=1.5e-05  Score=50.58  Aligned_cols=54  Identities=15%  Similarity=0.209  Sum_probs=45.7

Q ss_pred             hcCcCCCccceeeeEEEEeecC-------CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL-------PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp-------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.++       |.|....+......|..++|.|.+.+.|.+.|
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~p~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~v  140 (212)
T 2yd6_A           80 ECVASNNVGEISVSTRLTVLREDQIPRGFPTIDMGPQLKVVERTRTATMLCAASGNPDPEI  140 (212)
T ss_dssp             EEEEEETTEEEEEEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEEEEEEECSSCCEE
T ss_pred             EEEEEcCCCcEEEEEEEEEeccCccCCCcceeecCCcceeEecCCCEEEEEEecCCCCCeE
Confidence            4777777777889999999886       78888766677788999999999999998865

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=97.91  E-value=9e-06  Score=56.40  Aligned_cols=54  Identities=11%  Similarity=0.041  Sum_probs=49.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.++|....+.....|.|.++|.+....+-+....|..++|.|.+.+.|.+.|
T Consensus       274 ~C~a~N~~G~~~~~~~l~v~~~P~~~~~~~~~~v~~g~~v~l~C~~~g~P~p~i  327 (384)
T 3kld_A          274 ECVAENSRGKNVAKGQLTFYAQPNWVQIINDIHVAMEESVFWECKANGRPKPTY  327 (384)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEECTTCCEEEECEEEEESCCEE
T ss_pred             EEEEEcCCCeEEEEEEEEEecCCccccCCCceEecCCCCEEEEeECCccCCCeE
Confidence            588999888899999999999999988877888899999999999999999865

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=97.91  E-value=9.3e-06  Score=55.11  Aligned_cols=54  Identities=17%  Similarity=0.139  Sum_probs=48.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.++|.+.....-+....|..++|.|.+.+.|.+.|
T Consensus       273 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  326 (382)
T 1cs6_A          273 ECEAENIKGRDTYQGRIIIHAQPDWLDVITDTEADIGSDLRWSCVASGKPRPAV  326 (382)
T ss_dssp             EEEEEETTEEEEEEEEEEEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEE
T ss_pred             EEEEEcCCCeEEEEEEEEEecCCCcccCCCccEEcCCCeEEEEEEeeeecCCEE
Confidence            477888777889999999999999988877778899999999999999999865

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=97.89  E-value=1.2e-05  Score=49.27  Aligned_cols=54  Identities=20%  Similarity=0.151  Sum_probs=44.8

Q ss_pred             hcCcCCC-ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+. +...+..+.|.|.++|.|......+....|..++|.|.+.+.|.+.|
T Consensus        78 ~C~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~v  132 (192)
T 2iep_A           78 CCTANNGVGGAVESCGALQVKMKPKITRPPINVKIIEGLKAVLPCTTMGNPKPSV  132 (192)
T ss_dssp             EEEEECSSSCCEEEEEEEEEEEEEEEEECCCCEEEETTSCEEECCEEEEESCCEE
T ss_pred             EEEEEcCCCceeEeEEEEEEEeCCccccCCcceEEeCCCcEEEEEEEeccCCceE
Confidence            3666554 34467889999999999999877788889999999999999998864

>2yr3_A Myosin light chain kinase, smooth muscle; IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.87  E-value=9.3e-06  Score=46.44  Aligned_cols=38  Identities=18%  Similarity=0.147  Sum_probs=34.1

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.|.+||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         6 ~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   43 (99)
T 2yr3_A            6 SGMEVAPSFSSVLKDCAVIEGQDFVLQCSVRGTPVPRI   43 (99)
T ss_dssp             SCCCEEEEEEECCCCEEECTTCCEEEECEEEEESCCCC
T ss_pred             CCcccCCceeecCCCCEEeCCCeEEEEEEEeeeCCCeE
Confidence            45789999999888888999999999999999999875

>3qp3_A Titin; I-SET IG-like, sarcomere, M-BAND, transferase; 2.00A {Homo sapiens}

Probab=97.84  E-value=7e-06  Score=47.13  Aligned_cols=38  Identities=16%  Similarity=0.215  Sum_probs=34.2

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|..+|.|..+.+.+...+|..+.|.|.+.+.|.+.|
T Consensus         3 l~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~i   40 (103)
T 3qp3_A            3 FTLDHAPRITLRMRSHRVPCGQNTRFILNVQSKPTAEV   40 (103)
T ss_dssp             TTTCEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred             CCCCCCCEEEeCCcceEEeCCCeEEEEEEEEecCCCEE
Confidence            46788999999988888999999999999999999865

>3b43_A Titin; I-SET IG fold, extended poly-IG filament, elastic FIL structural protein; 3.30A {Oryctolagus cuniculus}

Probab=97.84  E-value=2.6e-05  Score=57.19  Aligned_cols=54  Identities=15%  Similarity=0.038  Sum_probs=49.8

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.++|....++....|.|.+||.|....+-+.+..|..++|.|.+.+.|.+.|
T Consensus       456 ~C~A~N~~G~~~~~~~l~v~~~P~~~~~~~~~~~~~g~~~~l~c~~~g~p~~~v  509 (570)
T 3b43_A          456 QCKASNDVGSDTCVGSITLKAPPRFVKKLSDISTVVGEEVQLQATIEGAEPISV  509 (570)
T ss_dssp             EEEEECSSCEEEEEEEEEECCCCEEEECCCCBCCBTTCCEEEEEEEESCSSCCC
T ss_pred             EEEEEECCCeEEEEEEEEeccCCcccccCCCceecCCCeEEEEEEEecCCCCEE
Confidence            589999988999999999999999998888888899999999999999999876

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=97.84  E-value=1.2e-05  Score=52.75  Aligned_cols=54  Identities=11%  Similarity=0.081  Sum_probs=46.6

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec-----ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER-----SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~-----~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+....+++.+.|.|.++|.|..+.     ..+....|..+.|.|.+.+.|.+.|
T Consensus        78 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~i  136 (305)
T 2nzi_A           78 QVRATNQGGSVSGTASLEVEVPAKIHLPKTLEGMGAVHALRGEVVSIKIPFSGKPDPVI  136 (305)
T ss_dssp             EEEEEETTEEEEEEEEEEECEEEEECCCHHHHSSCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred             EEEEEcCCCCccceEEEEEecCCccCCCccccccccEEecCCCEEEEEEEECCCCCCEE
Confidence            48888887788999999999999998765     4567788999999999999998864

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.83  E-value=4.8e-05  Score=54.32  Aligned_cols=53  Identities=11%  Similarity=0.028  Sum_probs=47.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec---ceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER---SWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~---~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .|.+.+.....+..+.|.|.++|.|....   +.+...+|..++|.|.+.++|.+.
T Consensus       289 ~C~a~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~  344 (524)
T 2ec8_A          289 MCYANNTFGSANVTTTLEVVDKGFINIFPMINTTVFVNDGENVDLIVEYEAFPKPE  344 (524)
T ss_dssp             EEEEECSSCEEEEEEEEEEESSCEEEEEESSCSEEEECTTCCEEEEEEEEEESCCC
T ss_pred             EEEEEecCCceEEEEEEEEeccCceEeecCCCceEEEcCCCcEEEEEEEeecCCCc
Confidence            58888888888899999999999998864   368889999999999999999987

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.83  E-value=1.8e-05  Score=57.24  Aligned_cols=51  Identities=10%  Similarity=-0.119  Sum_probs=43.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec--ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER--SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~--~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.++|.   .++.+.|+|.++|.|....  ..+...+|..+.|.|.+.|+|.|.|
T Consensus       306 ~C~A~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i  358 (423)
T 3qs7_E          306 TCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC  358 (423)
T ss_dssp             EEEETTE---EEEEEEEEEESSCEEEEC---CEECCCTTCCCCEEEEEEEESCCEE
T ss_pred             EEEEecC---CCceEEEEEEeCCcceEcCCCccEEecCCCeEEEEEEEEEcCCCeE
Confidence            4888887   8899999999999988653  5677889999999999999999865

>1fhg_A Telokin; immunoglobulin fold, beta barrel, contractIle protein; 2.00A {Meleagris gallopavo} SCOP: b.1.1.4 PDB: 1tlk_A

Probab=97.83  E-value=8.2e-06  Score=50.96  Aligned_cols=45  Identities=16%  Similarity=0.130  Sum_probs=36.7

Q ss_pred             ceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         25 EVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        25 pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -......|.|.+||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus        29 ~~~~~~~~~v~~~P~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~v   73 (154)
T 1fhg_A           29 FLEEVAEEKPHVKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEV   73 (154)
T ss_dssp             -----CCCCCCEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             eeeehhcccCCCCCeEEccCCcEEEeCCCeEEEEEEEEEecCCEE
Confidence            344556788999999999988899999999999999999999865

>2v9t_A Roundabout homolog 1; structural protein-receptor complex, developmental protein, domain, roundabout, chemotaxis, LRR domain; 1.70A {Homo sapiens}

Probab=97.82  E-value=7.8e-06  Score=48.20  Aligned_cols=38  Identities=24%  Similarity=0.269  Sum_probs=33.9

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..|.+||.|....+.+.+..|..++|.|.+.+.|.+.|
T Consensus         4 ~~~~~pP~i~~~p~~~~v~~G~~v~L~C~~~g~P~p~v   41 (117)
T 2v9t_A            4 RQEDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI   41 (117)
T ss_dssp             CCCCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEE
T ss_pred             ccccCCCeeEcCCCCEEEcCCCcEEEEEECCccCCCeE
Confidence            35789999999888888899999999999999999865

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.80  E-value=3.5e-05  Score=50.00  Aligned_cols=54  Identities=20%  Similarity=0.181  Sum_probs=45.9

Q ss_pred             hcCcC-CCccceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         16 EEEPE-KDKEEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        16 ~~~~~-~~~~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      -|.+. +.....++.+.|.|.    ++|.|...........|..++|.|.+.+ .|.+.|
T Consensus       160 ~C~a~~~~~~~~~~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i  219 (289)
T 3ejj_X          160 VCKTMVNGRESTSTGIWLKVNRVHPEPPQIKLEPSKLVRIRGEAAQIVCSATNAEVGFNV  219 (289)
T ss_dssp             EEEEEETTEEEECCCEEEEEESSCCCCCEEEEESSSEECCSSSCEEEEEEEEESSSCCEE
T ss_pred             EEEEEeCCCccccccEEEEEEECCCCCCeEEecCCceEEEeCCcEEEEEEeCCCCCceEE
Confidence            47777 667778899999999    8999999987777789999999999999 687754

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=97.79  E-value=3.5e-05  Score=48.33  Aligned_cols=53  Identities=15%  Similarity=0.019  Sum_probs=40.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+ +...++.+.|.|..||..-..........|..++|.|.+.++|.+.|
T Consensus        96 ~C~~~~-~~~~~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~L~C~~~g~P~p~i  148 (222)
T 3sbw_C           96 RCMISY-GGADYKRITVKVNAPYNKINQRILVVDPVTSEHELTCQAEGYPKAEV  148 (222)
T ss_dssp             EEEEES-SSEEEEEEEEEEEBCCCCCEEEEEEEETTTTEEEEEEEEEEBSCCEE
T ss_pred             EEEEEe-CCCceeEEEEEEECCCCCCCceeeeeecCCCcEEEEEEecCCCCCeE
Confidence            477877 55678899999998886543332235678999999999999998865

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=97.79  E-value=1.7e-05  Score=59.69  Aligned_cols=54  Identities=13%  Similarity=0.061  Sum_probs=48.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -|.+.+.....+..+.|.|.+||.|....+-+....|..++|.|.+.+.|.+.|
T Consensus       693 ~C~a~N~~g~~~~~~~l~V~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i  746 (816)
T 3dmk_A          693 TCHARNLAGHQQFTTPLNVYVPPRWILEPTDKAFAQGSDAKVECKADGFPKPQV  746 (816)
T ss_dssp             EEEEECSSCEEEEEEEECEEEEEEEEECCCCEEEETTCCEEEECEEEEESCCEE
T ss_pred             EEEEEeCCccEEEEEEEEEEeCCceeeecccceecCCCcEEEEEEEecCCCCeE
Confidence            588888888899999999999999998877777789999999999999999865

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=97.78  E-value=1.4e-05  Score=49.22  Aligned_cols=54  Identities=9%  Similarity=-0.110  Sum_probs=44.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|+|.++|.+...........|..++|.|.+ .+.|.+.|
T Consensus       100 ~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v  154 (214)
T 3jz7_A          100 QCKVKKAPGVANKKFLLTVLVKPSGTRCFVDGSEEIGNDFKLKCEPKEGSLPLQF  154 (214)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCBSCEEEEESCCBTTCCEEEEEECSBCCSSCEE
T ss_pred             EEEEEeCCCccccEEEEEEEcCCCCceeeeecceecCCcEEEEecCCCCCCCCEE
Confidence            4777777777799999999999998766555557889999999999 89998865

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=97.77  E-value=1.8e-05  Score=48.84  Aligned_cols=54  Identities=11%  Similarity=-0.032  Sum_probs=43.1

Q ss_pred             hcCcCCCc--cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEE-EeeeCCCCC
Q psy15736         16 EEEPEKDK--EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCI-VHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~--~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~Ci-V~A~P~a~V   69 (70)
                      .|.+.+..  ...++.+.|.|.++|.+.....-.....|..++|.|. +.+.|.+.|
T Consensus        81 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~i  137 (212)
T 1f97_A           81 TCMVSEEGGQNYGEVSIHLTVLVPPSKPTISVPSSVTIGNRAVLTCSEHDGSPPSEY  137 (212)
T ss_dssp             EEEEEETTSSSEEEEEEEEEEEBCCCCCEEECCSEEETTSCEEEEEECSCCBSCCEE
T ss_pred             EEEEEccCCCcccEEEEEEEEEcCCCCcccCCccccCCCCeEEEEEEcccCcCCCEE
Confidence            46666553  3678899999999999876655566788999999999 799998864

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.76  E-value=2.7e-05  Score=47.56  Aligned_cols=54  Identities=11%  Similarity=0.073  Sum_probs=45.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEe---cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVE---RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~---~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+........+.|.|.++|.+...   ...+....|..+.|.|.+.+.|.+.|
T Consensus        79 ~C~~~n~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v  135 (197)
T 3lcy_A           79 TCIATNEVGEVETSSKLLLQATPQFHPGYPLKEKYYGAVGSTLRLHVMYIGRPVPAM  135 (197)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEEEECTTSCCCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             EEEEECCCCceeEEEEEEEEcCCCCCCCccCCcceeecCCCeEEEEEEEeeeeCCee
Confidence            4778877778899999999999998753   34566688999999999999999865

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=97.76  E-value=2.4e-05  Score=51.31  Aligned_cols=53  Identities=11%  Similarity=0.142  Sum_probs=43.0

Q ss_pred             hcCcCCCccc-eeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .|.+.+.+.. .++.+.|+|.    ++|.|....+-....+|..++|.|.+.+.|.+.
T Consensus       162 ~C~a~n~~~~~~s~~~~l~V~~~~~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~  219 (290)
T 2o26_X          162 RCAAQRDGTWLHSDKFTLKVREAIKAIPVVSVPETSHLLKKGDTFTVVCTIKDVSTSV  219 (290)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCSCCEEECSCSBCCCCTTCCEEEEEEEEESSTTC
T ss_pred             EEEEEECCceEEeEEEEEEEEeCCCCCCccccCCCcceEecCCcEEEEEEEecCCcce
Confidence            4677766554 3556888887    899998886666889999999999999999885

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.76  E-value=3.4e-05  Score=50.10  Aligned_cols=54  Identities=17%  Similarity=0.091  Sum_probs=42.7

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.  +...++.+.|.|.++|.|.....  -+....|..++|.|.+.+.|.+.|
T Consensus       171 ~C~a~n~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~p~i  228 (291)
T 1qz1_A          171 RCEGRILARGEINFKDIQVIVNVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM  228 (291)
T ss_dssp             EEEEEEGGGTEEEEEEEEEEEEEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred             EEEEEecCCCceeeEEEEEEEecCCcccccccccccccccCceEEEEEEEEEeCCCcE
Confidence            3666543  44567889999999999988654  446688999999999999999864

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=97.73  E-value=4.8e-06  Score=54.54  Aligned_cols=54  Identities=9%  Similarity=0.044  Sum_probs=41.9

Q ss_pred             hcCcC----CCccceeeeEEEEeecCCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPE----KDKEEVRRRRRRNQKNLPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~----~~~~pvs~~I~L~V~ypPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.++    |.....+..+.|+|+|+|.+.....  -+...+|..++|.|.+.+.|.+.|
T Consensus       158 ~C~a~n~~~g~~~~~s~~~~l~V~~~p~~~~~~~p~~~~v~~g~~~~l~C~~~g~P~p~i  217 (265)
T 2oz4_A          158 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL  217 (265)
T ss_dssp             EEEEEEECSSSEEEEEEEEEEEEEEEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred             EEEEEcCCCCCcccccccEEEEEEeCCccccccCCCccEEcCCCeEEEEeECccCCCCeE
Confidence            46665    3333445889999999999976642  556678999999999999999865

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=97.73  E-value=2.4e-05  Score=50.61  Aligned_cols=50  Identities=12%  Similarity=0.082  Sum_probs=39.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCe-EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPE-IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPe-I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+.....++.+.|.|.++|. +.+..+ ....+|..++|.|.+.+.|.
T Consensus        70 ~C~a~n~~~~~~~~~~l~V~~~p~~~~~~~~-~~~~~G~~~~L~C~~~~~~p  120 (202)
T 1vca_A           70 LCTATCESRKLEKGIQVEIYSFPKDPEIHLS-GPLEAGKPITVKCSVADVYP  120 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCSCCEEEES-SCEETTSCEEEEEEEEEEBS
T ss_pred             EEEEEECCceEeeEEEEEEEeCCCCCEeCCc-eEEcCCCCEEEEEEECCcCC
Confidence            488888888889999999999875 344433 55678999999999998643

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=97.72  E-value=9.5e-06  Score=55.87  Aligned_cols=50  Identities=12%  Similarity=-0.042  Sum_probs=42.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|.|.+||.|    .......|..++|.|.+.|.|.|.|
T Consensus       229 ~C~a~n~~g~~~~~~~l~V~~~P~i----~~~~~~~g~~v~l~C~~~g~P~p~i  278 (347)
T 2ifg_A          229 TCWAENDVGRAEVSVQVNVSFPASV----QLHTAVEMHHWCIPFSVDGQPAPSL  278 (347)
T ss_dssp             EECCEETTEECCEEECCCCBEEEEE----EECCCEESSSEEEEEEEEEESCCEE
T ss_pred             EEEEEcCCCCEEEEEEEEEcCCCee----eeccCccCceEEEEEEeeecCCCcE
Confidence            5788888888899999999999998    2233457999999999999999865

>2kdg_A Myotilin; immonoglobulin domain, actin-binding, structural protein, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=97.72  E-value=1.1e-05  Score=45.84  Aligned_cols=36  Identities=17%  Similarity=0.087  Sum_probs=31.9

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.+||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         2 ~~~~P~~~~~p~~~~~~~G~~~~l~C~~~g~p~p~v   37 (100)
T 2kdg_A            2 AMGPPRFIQVPENMSIDEGRFCRMDFKVSGLPAPDV   37 (100)
T ss_dssp             CCEEEECCCCCCCEEEETTCCEEEEEECEEESCCEE
T ss_pred             CCCCCeEEeCCCCEEecCCCEEEEEEEEEeeCCCEE
Confidence            568999988877888899999999999999998865

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.71  E-value=3.2e-06  Score=59.00  Aligned_cols=54  Identities=9%  Similarity=0.070  Sum_probs=43.6

Q ss_pred             hcCcCCCcc----ceeeeEEEEeecCCeEEEec--ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKE----EVRRRRRRNQKNLPEIEVER--SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~----pvs~~I~L~V~ypPeI~v~~--~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+++...    ..+..+.|+|+|+|.|....  +-+...+|..++|.|.+.|.|.|.|
T Consensus       343 ~C~a~n~~~g~~~~~~~~~~l~V~~~P~~~~~~~p~~~~~~~g~~~~l~C~~~g~P~p~i  402 (450)
T 1z7z_I          343 SCSATLEVAGQLIHKNQTRELRVLYGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL  402 (450)
T ss_dssp             EEEEEEEETTEEEEEEEEEECEEEEEEECCSTTSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred             EEEEEcCCCCcccccceeEEEEEecCCceeeccCCCceeEcCCCeEEEEEecccCCCCcE
Confidence            377763222    45688999999999998875  5667789999999999999999875

>2rik_A Titin; I-SET IG fold, poly-IG linear array, structural protein; 1.60A {Oryctolagus cuniculus} PDB: 2rjm_A

Probab=97.71  E-value=6.9e-05  Score=48.66  Aligned_cols=54  Identities=6%  Similarity=-0.002  Sum_probs=44.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.++|.+... .+......|..++|.|.+.+.|.+.|
T Consensus        77 ~C~~~n~~g~~~~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~~~v  131 (284)
T 2rik_A           77 TCYASNVAGKDSCSAQLGVQEPPRFIKKLEPSRIVKQDEHTRYECKIGGSPEIKV  131 (284)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCEEEECCCSEEEEETTCCEEEEEEEESSSCCEE
T ss_pred             EEEEEECCceEEEEEEEEccCCCcccccCCCceEecCCceEEEEEEEeeeCCCEE
Confidence            4777777777899999999999997765 44555678999999999999998764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.70  E-value=3.2e-05  Score=51.23  Aligned_cols=54  Identities=13%  Similarity=0.204  Sum_probs=47.1

Q ss_pred             hcCcCCCccceeeeEEEEeecC-------CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL-------PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp-------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|+|.++       |.|....+.+....|..++|.|.+.+.|.+.|
T Consensus        80 ~C~a~n~~g~~~~~~~l~V~~~~~~p~~~p~i~~~~~~~~v~~g~~v~l~C~~~g~p~~~v  140 (304)
T 2yd9_A           80 ECVAQNSVGEITVHAKLTVLREDQLPSGFPNIDMGPQLKVVERTRTATMLCAASGNPDPEI  140 (304)
T ss_dssp             EEEEECSSCEECCEEEEEEECGGGCCTTCCEEEECCCCEEEETTSCEEECCEEECSSCCEE
T ss_pred             EEEEECCCCeEEEEEEEEEeccccCCCCCCeeecCCccEEEeCCCeEEEEEECccCCCCeE
Confidence            4788887777899999999987       88888877788889999999999999998864

>2e7c_A Myosin-binding protein C, fast-type; IG-like domain, fast MYBP-C, C-protein, skeletal muscle fast-isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.67  E-value=1.5e-05  Score=47.29  Aligned_cols=49  Identities=14%  Similarity=0.133  Sum_probs=37.0

Q ss_pred             CCccceeeeEEE---EeecCCeEEEe---cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         21 KDKEEVRRRRRR---NQKNLPEIEVE---RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        21 ~~~~pvs~~I~L---~V~ypPeI~v~---~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.|......|   .|..+|.|.++   .+.+....|..+.|.|.+.+.|.+.|
T Consensus         2 G~s~p~~~~~~v~~~~v~~~P~i~~~~~~~~~~~v~~G~~~~l~C~~~g~P~p~i   56 (118)
T 2e7c_A            2 SSGSSGTLAQPVTIREIAEPPKIRLPRHLRQTYIRKVGEQLNLVVPFQGKPRPQV   56 (118)
T ss_dssp             CCCCCCCCCCCCCCCCCSEEEEECCCTTTSSCEEEESSSCEEEEEEEEEESCCEE
T ss_pred             CcCCccccCCCEEEEeeccCCeEecCcccCCCEEEECCCEEEEEEEEccCCCCEE
Confidence            344444444444   67789999874   46677789999999999999999865

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=97.66  E-value=3.4e-05  Score=50.39  Aligned_cols=54  Identities=15%  Similarity=0.079  Sum_probs=42.1

Q ss_pred             hcCcCC-CccceeeeEEEEeec--CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEK-DKEEVRRRRRRNQKN--LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~-~~~pvs~~I~L~V~y--pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+ .+...+..+.|.|.+  +|.|.+..+-....+|..++|.|.+.+.|.+.|
T Consensus       157 ~C~a~n~~~~~~s~~~~l~v~~~~~p~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~v  213 (289)
T 3mjg_X          157 ICKTTIGDREVDSDAYYVYRLQVSSINVSVNAVQTVVRQGENITLMCIVIGNEVVNF  213 (289)
T ss_dssp             EEEEEETTEEEECCCEEEEECCCCCCCCEEEESCSEEETTSCEEEEEEEESCSSBEE
T ss_pred             EEEEEeCCceeeeeeEEEEecCCCCCCcEEeCCcceeEcCCCEEEEEEECCCCCcce
Confidence            366763 344456667888887  899998866666789999999999999998764

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=97.64  E-value=4.3e-05  Score=46.48  Aligned_cols=53  Identities=17%  Similarity=0.115  Sum_probs=41.5

Q ss_pred             cCcCCC--ccceeeeEEEEeecCCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKD--KEEVRRRRRRNQKNLPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~--~~pvs~~I~L~V~ypPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.+.  +...++.+.|.|.++|.+.....  .+....|..++|.|.+.+.|.+.|
T Consensus        74 C~~~~~~~~~~~~~~~~l~v~~~p~~~~~~~~~~~~~~~g~~v~l~C~~~g~p~~~v  130 (189)
T 2v5t_A           74 CEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  130 (189)
T ss_dssp             EEEEETTTTEEEEEEEEEEEEEEEEEECSCCEEEEETTSCCCEEEECEEEEESCCEE
T ss_pred             EEEEEcCCCceEEEEEEEEecCCCCcccccccccccccCCCcEEEEEEEccCCCCeE
Confidence            555443  44556789999999999988754  456678999999999999998864

>1qz1_A Neural cell adhesion molecule 1, 140 kDa isoform; IG modules, NCAM; 2.00A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ie5_A

Probab=97.64  E-value=5.9e-05  Score=48.97  Aligned_cols=54  Identities=11%  Similarity=-0.021  Sum_probs=45.3

Q ss_pred             hcCcCCCc-cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDK-EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~-~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.. ...++.+.|+|..+|.+......+...+|..+.|.|.+.+.|.+.|
T Consensus        78 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~p~~~v  132 (291)
T 1qz1_A           78 KCVVTAEDGTQSEATVNVKIFQKLMFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI  132 (291)
T ss_dssp             EEEEECTTSCEEEEEEEEEEECCSEEEECCSSEEEETTSCEEECCEEECSSCCEE
T ss_pred             EEEEEcCCCCeeEEEEEEEeeccccccCCCCcccccCCCeEEEEEEeccCCCCEE
Confidence            46666654 5677899999999999998877777889999999999999998764

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=97.61  E-value=8.6e-05  Score=46.64  Aligned_cols=54  Identities=11%  Similarity=0.033  Sum_probs=44.4

Q ss_pred             hcCcCCCc-cceeeeEEEEeecC---CeEEEecceEEeccCCcE-EEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKDK-EEVRRRRRRNQKNL---PEIEVERSWVHSGEGYEA-QLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~-~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a-~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+.. ...+..+.|.|.++   |.|....+.+....|..+ +|.|.+ .+.|.+.|
T Consensus        93 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~~g~~~~~l~C~~~~~~p~p~i  152 (231)
T 2pet_A           93 VCVVRAGAAGTAEATARLNVFAKPEATEVSPNKGTLSVMEDSAQEIATCNSRNGNPAPKI  152 (231)
T ss_dssp             EEEEECGGGCEEEEEEEEEEEBCCCCCEEEECCSSCCTTCCSEEEEEEEEEEEEBSCCEE
T ss_pred             EEEEEecCCCceEEEEEEEEEecCCCcEEecCCcceeecCCCceEEEEEEeECcccCCEE
Confidence            47776665 77889999999998   567777777777889988 999999 99999865

>3qs7_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, CY receptor complex, extracellular complex; HET: NAG; 4.30A {Homo sapiens}

Probab=97.61  E-value=3.7e-05  Score=55.53  Aligned_cols=53  Identities=13%  Similarity=0.078  Sum_probs=39.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+....++..+.|+|.++|.|...++.+. ..|..+.|.|.+.+.|.|.|
T Consensus       119 ~C~a~N~~g~~~~~~~l~V~~~p~~~~~~p~~~-~~~~~~~L~C~a~G~P~P~i  171 (423)
T 3qs7_E          119 LLFIQSEATNYTILFTVSIRNTLLYTLRRPYFR-KMENQDALVCISESVPEPIV  171 (423)
T ss_dssp             EEEEEC--CEEEEEEEEEEC-----CEEEEEEE-ECSSSSCEEEEEEESSCCEE
T ss_pred             EEEEEcCCCcEEEEEEEEEecCccccccCCcEe-ccCCceEEEEEEeeecCCeE
Confidence            478888888899999999999999977777665 45888999999999999875

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=97.58  E-value=9.6e-05  Score=46.14  Aligned_cols=53  Identities=13%  Similarity=-0.085  Sum_probs=39.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|+|..+|..- .-.......|..++|.|.+.++|.+.|
T Consensus        83 ~C~~~~~~~~~~~~~~l~V~~~~~~p-~~~~~~~~~g~~v~l~C~~~g~P~p~v  135 (202)
T 3bp6_B           83 RCLVICGAAWDYKYLTVKVKASYMRI-DTRILEVPGTGEVQLTCQARGYPLAEV  135 (202)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCCCE-EEEEEECTTTCCEEEEEEEEEBSCCEE
T ss_pred             EEEEEeCCCcceEEEEEEecCCCCcc-cEEEEecCCCCeEEEEEEccccCCceE
Confidence            47777777777899999999875211 111234578999999999999999865

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.57  E-value=5e-05  Score=54.64  Aligned_cols=54  Identities=9%  Similarity=0.013  Sum_probs=46.8

Q ss_pred             hcCcCCCccce----eeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEV----RRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pv----s~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.+...    ++.+.|.|.++|.|....+.+...+|..++|.|.+.+.|.+.+
T Consensus       306 ~C~a~n~g~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~G~~v~l~C~~~~~p~p~i  363 (585)
T 2ocw_A          306 LCGAHSDGQLQEGSPIQAWQLFVNEESTIPRSPTVVKGVAGSSVAVLCPYNRKESKSI  363 (585)
T ss_pred             EEEEEcCCCccccCceeeEEEEEecccccccCCcceEEEeCCcEEEEEecCCCCCccE
Confidence            47788876655    3899999999999998888888899999999999999998864

>2dm3_A KIAA0992 protein, palladin; beta-sandwich, myopalladin, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.57  E-value=4.5e-05  Score=44.14  Aligned_cols=35  Identities=20%  Similarity=0.189  Sum_probs=31.9

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|+|.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         7 ~~~P~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   41 (110)
T 2dm3_A            7 GFRPHFLQAPGDLTVQEGKLCRMDCKVSGLPTPDL   41 (110)
T ss_dssp             CCCCEEEECCCEEEEESSSCBCCEEEEECSSCCEE
T ss_pred             CCCCcEEeCCCcEEEeCCCEEEEEEEEEEcCCCEE
Confidence            58999999988899999999999999999998864

>2edh_A Obscurin; structural genomics, NPPSFA, national project on P structural and functional analyses, riken structural genomics/proteomics initiative; NMR {Homo sapiens}

Probab=97.56  E-value=5.1e-05  Score=44.53  Aligned_cols=44  Identities=14%  Similarity=0.011  Sum_probs=36.8

Q ss_pred             CccceeeeEEEEee-cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         22 DKEEVRRRRRRNQK-NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        22 ~~~pvs~~I~L~V~-ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ++...+....|+|. .||.|....+.+.+.+|..++|.|.+.+.|
T Consensus         3 s~g~~~~~~~l~V~~~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p   47 (113)
T 2edh_A            3 SGSSGRTSAMLTVRALPIKFTEGLRNEEATEGATAVLRCELSKMA   47 (113)
T ss_dssp             CCCCCCCCCCCCCCCSCCCEEECCCCCEECTTSCEEEEEEESSCC
T ss_pred             CCCCCcEEEEEEEEcCCCcccccCCceEEeCCCeEEEEEEECCCC
Confidence            45667788899999 556998887788899999999999998764

>2yd9_A Receptor-type tyrosine-protein phosphatase S; hydrolase; HET: NAG B3P; 2.60A {Homo sapiens}

Probab=97.56  E-value=5.9e-05  Score=49.92  Aligned_cols=54  Identities=9%  Similarity=0.016  Sum_probs=40.8

Q ss_pred             hcCcCCCcccee---eeEEEEe-ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVR---RRRRRNQ-KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs---~~I~L~V-~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+......   ..+.|.| .++|.|......+....|..++|.|.+.+.|.+.|
T Consensus       180 ~C~a~n~~g~~~~~~~~l~v~~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v  237 (304)
T 2yd9_A          180 ECVATNSAGVRYSSPANLYVRVQNVAPRFSILPMSHEIMPGGNVNITCVAVGSPMPYV  237 (304)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCEEEEEEECCCCBCCCTTCCEEEEEEEEEESCCEE
T ss_pred             EEEEEeCCCCEEeccEEEEEEeeccCCcEEecCCceEEcCCCeEEEEEEEeeeCCCEE
Confidence            366666554443   4455555 48999998877777889999999999999999865

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.55  E-value=2.4e-05  Score=50.80  Aligned_cols=54  Identities=17%  Similarity=0.116  Sum_probs=42.4

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.  +...++.+.|.|.+||.|.....  .+....|..++|.|.+.+.|.+.|
T Consensus       169 ~C~~~n~~~~~~~~~~~~~~v~~~p~~~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  226 (291)
T 2wim_A          169 RCEGRVEARGEIDFRDIIVIVNVPPAISMPQKSFNATAERGEEMTFSCRASGSPEPAI  226 (291)
T ss_dssp             EEEEEETTTTEEEEEEEEEEEEBCCCCBCSCSEEECCSSSCCEEEEECBCCCBSCCEE
T ss_pred             EEEEEECCCCeeEEeeEEEEeccCCccccCcccccceecCCCeEEEEEEeecCCCCeE
Confidence            3655543  34466889999999999988754  345678999999999999998864

>1wit_A Twitchin 18TH IGSF module; immunoglobulin superfamily, I SET, muscle protein; NMR {Caenorhabditis elegans} SCOP: b.1.1.4 PDB: 1wiu_A

Probab=97.51  E-value=7.1e-05  Score=42.51  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=29.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|..+...+....|..+.|.|.+.+.|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~C~~~g~P~p~i   34 (93)
T 1wit_A            2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA   34 (93)
T ss_dssp             CCEECCCCCEEEECTTBCCEEEEEEECCSSCEE
T ss_pred             CCeEEcCCCceEEeCCCEEEEEEEEEEcCCCEE
Confidence            788888877888999999999999999999865

>3knb_A Titin; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 3q5o_A 2wp3_T* 2wwk_T 2wwm_D 2y9r_T*

Probab=97.49  E-value=5.6e-05  Score=44.79  Aligned_cols=34  Identities=26%  Similarity=0.353  Sum_probs=29.2

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|....+-+...+|+.+.|.|.+.|.|.|.|
T Consensus         4 ~PP~i~~~p~~~~v~~G~~~~l~C~~~g~P~p~v   37 (100)
T 3knb_A            4 IPPKIEALPSDISIDEGKVLTVACAFTGEPTPEV   37 (100)
T ss_dssp             EEEEECCCCSEEEEETTSEEEEEEEEEEESCCEE
T ss_pred             CCCEEEeCCCcEEEeCCCeEEEEEEEEEecCCEE
Confidence            4788877766778889999999999999999875

>1u2h_A APEG-1, aortic preferentially expressed protein 1; structural genomics, IG-fold I-SET, RGD motif, homophilic adhesion, arterial smooth muscle cells; 0.96A {Homo sapiens}

Probab=97.49  E-value=9e-05  Score=41.94  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=30.5

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   37 (99)
T 1u2h_A            3 KAPPTFKVSLMDQSVREGQDVIMSIRVQGEPKPVV   37 (99)
T ss_dssp             CEEEEEEECCCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred             CCCCEEEEcCCceEecCCCEEEEEEEEEEcCCCEE
Confidence            35788888877788899999999999999999865

>2ec8_A MAST/stem cell growth factor receptor; glycoprotein, receptor tyrosine kinase, growth factor cytoki dimerization, transferase; HET: NAG; 3.00A {Homo sapiens} PDB: 2e9w_A*

Probab=97.48  E-value=7.8e-05  Score=53.22  Aligned_cols=48  Identities=15%  Similarity=0.067  Sum_probs=42.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+++....+++.+.|.|.+||.|.....   ...|   +|.|.+.|.|.|.|
T Consensus       391 ~C~a~N~~g~~~~~~~l~V~~~P~i~~~~~---~~~g---~l~C~~~g~P~p~i  438 (524)
T 2ec8_A          391 TFLVSNSDVNAAIAFNVYVNTKPEILTYDR---LVNG---MLQCVAAGFPEPTI  438 (524)
T ss_dssp             EEEEECSSCEEEEEEEEEECEEEEEEEEEC---CSSS---CEEEEEEEESCCEE
T ss_pred             EEEEEecCceEEEEEEEEEecCCeEeeccc---CcCc---EEEEEEEeecCCEE
Confidence            588899888899999999999999998876   3456   99999999999865

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=97.48  E-value=1.5e-05  Score=49.06  Aligned_cols=54  Identities=11%  Similarity=0.005  Sum_probs=42.3

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+.  ....+..+.|+|.++|.+...........|..++|.|.+ .+.|.+.|
T Consensus        84 ~C~~~~~~g~~~~~~~~~l~V~~~p~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v  140 (209)
T 1nbq_A           84 TCMVSEEGGNSYGEVKVKLIVLVPPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY  140 (209)
T ss_dssp             EEEEEETTSSCEECCEEECCEEBCCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEE
T ss_pred             EEEEecCCCCccceEEEEEEEecCCcCCCcccccceecCCEEEEEEeCCCCCCCcee
Confidence            3555554  345678899999999998766555567889999999997 99998864

>3puc_A Titin; I-SET IG-like domain, M-BAND, transferase; 0.96A {Homo sapiens}

Probab=97.47  E-value=0.0001  Score=41.59  Aligned_cols=36  Identities=14%  Similarity=0.086  Sum_probs=31.4

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +..||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         3 ~~~~P~i~~~~~~~~v~~G~~~~l~C~~~g~p~p~v   38 (99)
T 3puc_A            3 ISSKPVIVTGLQDTTVSSDSVAKFAVKATGEPRPTA   38 (99)
T ss_dssp             CCEEEEEEECCCCEEEESSSCEEEEEEEEEESCCEE
T ss_pred             CCCCCEEEecCccEEEeCCCcEEEEEEEEecCCCEE
Confidence            456888888888888899999999999999998864

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=97.47  E-value=0.00016  Score=46.22  Aligned_cols=54  Identities=15%  Similarity=0.111  Sum_probs=43.8

Q ss_pred             hcCcCCC-ccceeeeEEEEeecC---------------CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNL---------------PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~yp---------------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -|.+.+. +...+..+.|.|.++               |.+......+....|..++|.|.+.+.|.+.|
T Consensus        81 ~C~~~n~~~~~~s~~~~l~V~~~~~~~~~~~~~~~~~~p~~~~~~~~~~v~~G~~v~L~C~~~g~p~~~v  150 (218)
T 3k0w_A           81 VCRVNNNFTFEFSQWSQLDVCDIPESFQRSVDGVSESKLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY  150 (218)
T ss_dssp             EEEEECTTCCEECCCEEEEEECCCGGGCTTCCSBCCSSCEEEECCCCEEECTTCCEEEECEEEBSSCCEE
T ss_pred             EEEEEcCCCCceeeEEEEEEEccCcccccccccccCCCceEEECCCceeecCCCcEEEEEEecccCCCeE
Confidence            3666655 344577899999988               78888877788899999999999999998864

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=97.44  E-value=3.2e-05  Score=51.11  Aligned_cols=52  Identities=15%  Similarity=0.121  Sum_probs=39.9

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEec-ceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVER-SWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.  ..+.+..+.|+|+++|.|.+.. +......|..++|.|.+.|.|.+
T Consensus       188 ~C~a~n~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p  242 (308)
T 4fom_A          188 TCVVKHPALEKDIRYSFILDIQYAPEVSVTGYDGNWFVGRKGVNLKCNADANPPP  242 (308)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCEEEEECCBCCCSCEETTCCSCEEECCEEEESCE
T ss_pred             EEEEEccCCCCceEEeEEEEEecCCeeEEcccceeeeeccccEEEEEEEecCCCC
Confidence            3666654  3456778999999999998763 33444668899999999999987

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=97.43  E-value=0.00031  Score=45.59  Aligned_cols=52  Identities=13%  Similarity=0.107  Sum_probs=42.5

Q ss_pred             hcCcCCCccc-eeeeEEEEeec----CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKN----LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~y----pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.+.. .+..+.|.|.+    +|.|....+......|..++|.|.+.+.|.+
T Consensus       160 ~C~a~n~~~~~~s~~~~l~V~~~~~~~p~i~~~~~~~~~~~g~~v~l~C~~~~~~~~  216 (292)
T 4dkd_C          160 QCSALMGGRKVMSISIRLKVQKVIPGPPALTLVPAELVRIRGEAAQIVCSASSVDVN  216 (292)
T ss_dssp             EEEECSTTSCEECCCEEEEEECCCCSSCEEEEESSCBCCCSSSCEEEEEEEEESSSC
T ss_pred             EEEEEeCCCceeEEEEEEEEeCCCCCCCeEEccCCceeEecCCCEEEEEEecCCCCc
Confidence            4777765554 46689999997    9999998777766799999999999998864

>2r15_A Myomesin-1; sarcomeric protein, IG-like domains, homodimer, immunoglobul domain, muscle protein, thick filament, contractIle protein; 2.24A {Homo sapiens}

Probab=97.40  E-value=0.00017  Score=44.70  Aligned_cols=54  Identities=17%  Similarity=0.113  Sum_probs=41.3

Q ss_pred             hcCcCCCccceeeeEEEEeec---------------------CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN---------------------LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y---------------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+........+.|.|..                     ||.+......+....|..++|.|.+.+.|.+.|
T Consensus        75 ~C~~~n~~~~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v  149 (212)
T 2r15_A           75 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV  149 (212)
T ss_dssp             EEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHHHHSCEEEEBCCSEEEEETTCCEEEEEEEECSSCCEE
T ss_pred             EEEEecCCcceEEEEEEEEeeccchhhhccccCcccccccCCCcccccCCCcEEEccCCeEEEEEEEcCCCCceE
Confidence            477777777778888888773                     444444455677788999999999999999865

>1wwb_X Protein (brain derived neurotrophic factor receptor TRKB); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 2.10A {Homo sapiens} SCOP: b.1.1.4 PDB: 1hcf_X

Probab=97.38  E-value=6.2e-05  Score=44.44  Aligned_cols=33  Identities=12%  Similarity=0.067  Sum_probs=26.6

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+|||.|..-.   ....|+.+.|.|.|.|.|.|.|
T Consensus         1 V~~pP~i~~~~---~~~~~~~~~~~c~v~G~P~P~i   33 (103)
T 1wwb_X            1 VHFAPTITFLE---SPTSDHHWCIPFTVKGNPKPAL   33 (103)
T ss_dssp             CCCCCCCCCCC---CCCCCCEEEEEEEEECSSCCEE
T ss_pred             CCCCCEEEecc---CceECcEEEEEEEEEEeCCCEE
Confidence            78999985322   2456899999999999999875

>1wwc_A Protein (NT-3 growth factor receptor TRKC); TRK receptor, receptor tyrosine kinase, 3D-domain swapping, transferase; 1.90A {Homo sapiens} SCOP: b.1.1.4

Probab=97.35  E-value=5.2e-05  Score=44.91  Aligned_cols=37  Identities=11%  Similarity=-0.013  Sum_probs=26.7

Q ss_pred             EEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         30 RRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        30 I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|+|+|||.|......   ..+..+.|.|.+.|.|.+.|
T Consensus         1 v~L~V~~pP~i~~~~~~---~~~~~~~l~C~~~g~P~p~i   37 (118)
T 1wwc_A            1 VALTVYYPPRVVSLEEP---ELRLEHCIEFVVRGNPPPTL   37 (118)
T ss_dssp             ---CCCCCCCCCCCCCC---CCCCEEEEEEEEECSSCCEE
T ss_pred             CEEEEecCCceeccCCC---eeccceEEEEEeeeeCCCeE
Confidence            57999999998766332   23467899999999999865

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=97.34  E-value=0.00026  Score=45.64  Aligned_cols=51  Identities=14%  Similarity=0.059  Sum_probs=37.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      .|.+.+......+.+.|.|..+|.|.+..... +..|..++|.|.+.+ .|.+
T Consensus        98 ~C~~~~~~~~~~~~~~L~V~~~P~v~~~~~~~-~~~~~~~~L~C~~~g~~P~p  149 (248)
T 3pv7_A           98 RCEVVVTPLKAQGTVQLEVVASPASRLLLDQV-GMKENEDKYMCESSGFYPEA  149 (248)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCEEEEECC---------CEEEEEEEEEBSSC
T ss_pred             EEEEEeCCccceeEEEEEEecCCceEEecCCc-cccCCCcEEEEEEccEECCC
Confidence            37777777778899999999999999876643 356888999999999 7887

>1z7z_I Intercellular adhesion molecule-1; ICAM-1,kilifi,CD54,human coxsackievirus A21, cryo-electron microscopy,virus-receptor complex, icosahedral virus; HET: NAG NDG; 8.00A {Homo sapiens} SCOP: b.1.1.3 b.1.1.3 b.1.1.4 b.1.1.4 b.1.1.4

Probab=97.32  E-value=0.00019  Score=49.96  Aligned_cols=52  Identities=12%  Similarity=-0.086  Sum_probs=42.9

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec-ceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER-SWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.+...++.+.|.|.++|.+.... +-+...+|+.++|.|.+.+.|.+
T Consensus        64 ~C~a~~~~~~~~~~~~l~V~~~P~~~~~~~~~~~v~~G~~v~L~C~~~g~~~~  116 (450)
T 1z7z_I           64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKNLTLRCQVEGGAPR  116 (450)
T ss_dssp             EEEEEETTEEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCG
T ss_pred             EEEEeCCCCcceeEEEEEEEeCCCcceecCCCceEeeCCeEEEEEEecCCCCC
Confidence            47777777788899999999999988543 33566789999999999999876

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=97.32  E-value=0.00028  Score=46.55  Aligned_cols=43  Identities=19%  Similarity=0.120  Sum_probs=35.2

Q ss_pred             eeeEEEEee-----cCCeEEEecc-eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         27 RRRRRRNQK-----NLPEIEVERS-WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        27 s~~I~L~V~-----ypPeI~v~~~-~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.+.|.|.     ++|.|..+.+ .+...+|..++|.|.+.+.|.+.|
T Consensus       193 ~~~~~~~~~~~~~~~~P~~~~~~~~~~~~~~g~~v~l~C~~~g~P~p~i  241 (315)
T 1itb_B          193 TRVIEFITLEENKPTRPVIVSPANETMEVDLGSQIQLICNVTGQLSDIA  241 (315)
T ss_dssp             EEEEEEEEECCCCCCCCEECSCCSEEEECCSSSCEEEEEEEEECTTSEE
T ss_pred             EEEEEEEEecCCCCCCCEEecCCCCcEEEeCCCcEEEEEEEecCCCCee
Confidence            566666565     8999987755 467899999999999999999864

>1g1c_A Immunoglobulin-like domain I1 from titin; immunoglobulin domain, beta-sandwhich, I-SET, structural protein; 2.10A {Homo sapiens} SCOP: b.1.1.4

Probab=97.28  E-value=0.00022  Score=40.32  Aligned_cols=34  Identities=21%  Similarity=0.263  Sum_probs=29.5

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         4 ~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   37 (99)
T 1g1c_A            4 EAPKIFERIQSQTVGQGSDAHFRVRVVGKPDPEC   37 (99)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCCceEecCcceEEcCCCcEEEEEEEEEeCCCEE
Confidence            4788888777788899999999999999998865

>2cr6_A KIAA1556 protein, obscurin; IG-fold, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.28  E-value=0.00012  Score=43.48  Aligned_cols=41  Identities=15%  Similarity=0.056  Sum_probs=33.7

Q ss_pred             eEEEEeecCC-eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         29 RRRRNQKNLP-EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        29 ~I~L~V~ypP-eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ...|.|+.+| .|....+-+.+.+|+.++|.|.+.+.|.+.|
T Consensus         4 ~a~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   45 (115)
T 2cr6_A            4 GSSGLVQGRRVHIIEDLEDVDVQEGSSATFRCRISPANYEPV   45 (115)
T ss_dssp             CCCCCCCSSCCEEEECCCEEEEETTSCEECCCEEESTTCCSC
T ss_pred             cEEEEEcCCCCeEeccCccEEEeCCCcEEEEEEEcCCCCCcc
Confidence            3457788877 6777777788899999999999999998865

>3so5_A LIG-3, leucine-rich repeats and immunoglobulin-like DOMA protein 3; structural genomics, joint center for struct genomics, JCSG; HET: MLY MSE; 1.70A {Mus musculus}

Probab=97.28  E-value=0.00056  Score=38.40  Aligned_cols=37  Identities=14%  Similarity=0.195  Sum_probs=28.6

Q ss_pred             EEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         30 RRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        30 I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +......+|.|....+.+.+..|..++|.|.+.+.|.
T Consensus         3 ~~c~~~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~   39 (112)
T 3so5_A            3 FVCDDFPXPQITVQPETQSAIXGSDVSFTCSAASSSD   39 (112)
T ss_dssp             -----CCSCEEEECCCCEEECTTCCEEEEEEEEESCC
T ss_pred             eecCCCCCCeEEeCCCCcEEECCCCEEEEEEEecCCC
Confidence            3455678999999887788899999999999997764

>3knb_B Obscurin-like protein 1; IG-like, titin, OBSL1, ATP-binding, calmodulin-BIN cardiomyopathy, disease mutation, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2wp3_O* 2wwm_C 2wwk_O

Probab=97.27  E-value=0.00021  Score=42.96  Aligned_cols=33  Identities=30%  Similarity=0.255  Sum_probs=28.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|...-+-+...+|+.+.|.|.+.|.|.+.|
T Consensus        13 pP~f~~~p~~~~v~~G~~~~l~C~~~G~P~p~v   45 (107)
T 3knb_B           13 PPCFLRFPRPVRVVSGAEAELKCVVLGEPPPVV   45 (107)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCEEEeCCCcEEEeCCCcEEEEEEEEEecCCEE
Confidence            677777666677889999999999999999875

>3d9a_H Heavy chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_H 1gpo_H 3ks0_H* 1dqd_H 1ndm_B 1nak_H 1dqq_B 1dqm_H 1dqj_B 1nby_B 1nbz_B 1xgu_B 1ndg_B 1xgt_B 1xgp_B 1xgq_B 1xgr_B 1s5i_H 1f8t_H 1f90_H ...

Probab=97.27  E-value=0.00032  Score=44.28  Aligned_cols=50  Identities=10%  Similarity=-0.002  Sum_probs=36.4

Q ss_pred             cCcCCCccceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |.+.+.. .....+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus        95 C~~~~~~-~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p  149 (210)
T 3d9a_H           95 CANWDGD-YWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  149 (210)
T ss_dssp             EEETTSS-CBCCCEEEEECCCCCBCCEEEEECCTTSCCCSSEEEEEEEEEEEBSSC
T ss_pred             EEEecCc-ccccceEEEeccCCCCCCEEEEecCCcccccCCcEEEEEEEeeEecCC
Confidence            6666542 23345677776    68898876644455789999999999998 876

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=97.27  E-value=0.00023  Score=52.09  Aligned_cols=54  Identities=9%  Similarity=-0.020  Sum_probs=41.7

Q ss_pred             hcCcCCCccc-eeeeEEEEeecCCe-EEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKNLPE-IEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~ypPe-I~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.... .+..+.|+|.++|. +.+..+-+....|..++|.|.+.+.|.+.|
T Consensus       536 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~v  591 (642)
T 1e07_A          536 VCGIQNSVSANRSDPVTLDVLYGPDTPIISPPDSSYLSGANLNLSCHSASNPSPQY  591 (642)
T ss_pred             EEEeEcCCCCccCCCEEEEEEeCCCcceecCCceeEEcCCcEEEEEEeccCCCCeE
Confidence            4777766443 45679999999775 555555567788999999999999999865

>1nct_A Titin; cell adhesion, glycoprotein, transmembrane, repeat, brain, immunoglobulin fold, alternative splicing, signal, muscle protein; NMR {Homo sapiens} SCOP: b.1.1.4 PDB: 1ncu_A 1tnm_A 1tnn_A

Probab=97.23  E-value=0.00033  Score=41.32  Aligned_cols=36  Identities=19%  Similarity=0.185  Sum_probs=32.2

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -.++|.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus        11 ~~~~~~i~~~p~~~~v~~G~~v~L~C~~~g~p~p~v   46 (106)
T 1nct_A           11 TTLAARILTKPRSMTVYEGESARFSCDTDGEPVPTV   46 (106)
T ss_dssp             SSCCCEEEECCCCEEESSSSCEECCEEEECSSCCBC
T ss_pred             CCCCCEEEECCCCEEEeCCCcEEEEEEEEEcCCCEE
Confidence            357889988888899999999999999999999876

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=97.23  E-value=0.00027  Score=44.23  Aligned_cols=50  Identities=10%  Similarity=0.064  Sum_probs=39.5

Q ss_pred             cCcCCCcc---ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDKE---EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~~---pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |.+.+...   .....+.|.|.    .+|.|.+..+......|..++|.|.+.+.|.
T Consensus        87 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~l~C~~~g~~p  143 (213)
T 3mj8_L           87 CQSWDGTNSAWVFGSGTKVTVLGQPNAAPSVTLFPPSSEELKTNQATLVCMINGFYP  143 (213)
T ss_dssp             EEEEETTTTEEEEBCCEEEEEECSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEeccCCcceeEEcCceEEEEeCCCCCCCeEEccCCCcccccCCcEEEEEEeeceeC
Confidence            66666554   56788899999    8999998765555558999999999999744

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=97.22  E-value=0.00064  Score=45.05  Aligned_cols=52  Identities=8%  Similarity=-0.133  Sum_probs=40.7

Q ss_pred             hcCcCCCcc-----ceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKE-----EVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~-----pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+...     .....+.|.|..+|.|....+.+...+|..++|.|.+.+.|.+
T Consensus        95 ~C~~~n~~g~~~~~~~~~~~~L~V~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  151 (256)
T 1nqb_A           95 YCARYDYYGSSYFDYWGQGTTVTVSSDIELTQTPLSLPVSLGDQASISCRSSQSIVH  151 (256)
T ss_dssp             EEEECCTTSSSSCSEECCCEEEEECCCCCEEEECSEEEECTTCCEEEEEEESSCCBC
T ss_pred             EEEEeeccCccceeEEcCceeeeecccccEEecCcEEEEecCCcEEEEeEecCcccc
Confidence            366665521     2345689999999998887777788999999999999999875

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=97.22  E-value=0.00038  Score=44.06  Aligned_cols=54  Identities=11%  Similarity=0.114  Sum_probs=41.8

Q ss_pred             hcCcCCCccceeeeEEEEeec----CCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN----LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y----pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.+    +|.+... ...+....|..++|.|.+.+.|.+.|
T Consensus        88 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~g~~v~L~C~~~~~p~p~v  146 (241)
T 3grw_A           88 TCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI  146 (241)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCCCEEEECTTCSEECCTTCCEEEEEEEECSSCCEE
T ss_pred             EEEEeecCCceEEEEEEEEeccCCCCceeecCCCccceecCCCEEEEEEEEecCCCCEE
Confidence            477777777788899999987    3444443 44566788999999999999998854

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=97.20  E-value=0.00029  Score=52.62  Aligned_cols=51  Identities=10%  Similarity=-0.119  Sum_probs=41.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec--ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER--SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~--~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+++.   .++.+.|+|.++|.|....  ..+...+|..+.|.|.+.|+|.|.|
T Consensus       306 ~C~a~N~---~~~~~~L~V~~~p~i~~~~~~~~~~v~~G~~v~L~C~~~g~P~p~i  358 (527)
T 3qs9_E          306 TCSSSKH---PSQSALVTIVEKGFINATNSSEDYEIDQYEEFCFSVRFKAYPQIRC  358 (527)
T ss_dssp             EEEETTE---EEEEEEEEEC--CEEECCCSCCEECCCTTCCCCEEEEEEEESCCEE
T ss_pred             EEEEEeC---CCceEEEEEEccCccccccCcccEEEcCCCeEEEEEEEEecCCCEE
Confidence            4778877   7899999999999987653  3466788999999999999999865

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=97.20  E-value=0.00033  Score=44.32  Aligned_cols=53  Identities=9%  Similarity=-0.009  Sum_probs=38.1

Q ss_pred             cCcCCCcc----ceeeeEEEEeecC----CeEEEecceEEeccCCcEEEEEEEee-eCCC-CC
Q psy15736         17 EEPEKDKE----EVRRRRRRNQKNL----PEIEVERSWVHSGEGYEAQLVCIVHA-EPHA-DP   69 (70)
Q Consensus        17 ~~~~~~~~----pvs~~I~L~V~yp----PeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a-~V   69 (70)
                      |.+.+...    .....+.|.|..+    |.|....+......|..++|.|.+.+ +|.+ .|
T Consensus        96 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p~~v  158 (219)
T 1c1e_H           96 CARGTTIVRAMDYWGQGTSLTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEPVTV  158 (219)
T ss_dssp             EEEEETTTTEEEEECCCEEEEECCCCCBCCEEEEECCCSSSCCSSEEEEEEEEEEEBSSCCEE
T ss_pred             EEEeccCcccceeecCceEEEEecCCCCCCeEEEecCccccccCCeEEEEEEcccccCCCeEE
Confidence            66665531    2335677888764    88887665555678999999999999 8987 44

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=97.20  E-value=0.00056  Score=41.72  Aligned_cols=35  Identities=23%  Similarity=0.208  Sum_probs=31.5

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .++|.|....+.+....|..++|.|.+.+.|.+.|
T Consensus       111 ~~~p~~~~~~~~~~~~~g~~~~l~C~~~g~p~p~v  145 (201)
T 3s97_C          111 PYPADIVVQFKDVYALMGQNVTLECFALGNPVPDI  145 (201)
T ss_dssp             CEEEEEEEECCCEEEETTCCEEEEEEEEEESCCEE
T ss_pred             CCCCceEecCCceEEecCCcEEEEEEccCCCCCce
Confidence            48999999988888899999999999999998865

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=97.18  E-value=0.00036  Score=44.64  Aligned_cols=52  Identities=6%  Similarity=0.040  Sum_probs=37.2

Q ss_pred             hcCcCCCcc--ceeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKE--EVRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+++...  +..+.|.|  .+..+|.|.+..+......|..++|.|.+.+++.+
T Consensus        84 ~C~a~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~  139 (207)
T 2vol_A           84 KCRVNSAAFPAPIEKTISKTKGRPKAPQVYTLPPPKEQMAKDKVSLTCMITDFFPE  139 (207)
T ss_dssp             EEEEECTTCSSCEEEEECCCCCCCBCCEEEEECCCTGGGSSSEEEEEEEEEEEBSS
T ss_pred             EEEEEccCCCCceEEEeccCCCCCcCCeEEEeCCCHHHhcCCceEEEEEEeeEECC
Confidence            466666544  34566666  78999999887554434469999999999996443

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=97.16  E-value=0.00086  Score=43.77  Aligned_cols=53  Identities=6%  Similarity=-0.009  Sum_probs=41.6

Q ss_pred             cCcCCC----ccceeeeEEEEeec----------------CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKD----KEEVRRRRRRNQKN----------------LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~----~~pvs~~I~L~V~y----------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.+.    .......+.|.|.-                +|.|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus        98 C~~~~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v  170 (256)
T 3umt_A           98 CARDDRYPAWFAYWGQGTTVTVSSGGGGSGGGGSGGGGSTDIQLTQSPSSLSASLGERVSITCRASQDIGSNL  170 (256)
T ss_dssp             EEECCSTTCCSCEECCCEEEEECC---------------CCCCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             EEEccCCCccccEECCCEEEEEcCCCccccCcccCCCCccccEEEcCCCeEEEECCCCEEEEEEEecCCCcEE
Confidence            666554    33345677888883                889988888888899999999999999887654

>3lcy_A Titin; A-BAND, IG tandem domains, ATP-binding, calmodulin-BI cardiomyopathy, disease mutation, disulfide bond, immunoglo domain, isopeptide bond; 2.50A {Homo sapiens}

Probab=97.16  E-value=0.00032  Score=42.70  Aligned_cols=37  Identities=30%  Similarity=0.320  Sum_probs=33.0

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+||.|....+-+...+|..++|.|.+.+.|.+.|
T Consensus         3 ~~~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v   39 (197)
T 3lcy_A            3 MSGEAPGIRKEMKDVTTKLGEAAQLSCQIVGRPLPDI   39 (197)
T ss_dssp             CCCEEEEEEECCCCEEEETTSEEEEEEEEEEESCCEE
T ss_pred             ccCCCCcccccCCceEEeCCCcEEEEEEEecCCCCEE
Confidence            3678999999988899999999999999999998754

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=97.14  E-value=0.00048  Score=43.81  Aligned_cols=50  Identities=12%  Similarity=-0.023  Sum_probs=41.4

Q ss_pred             hcCcCCCccceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+.....++.+.|.|..   +|.|.... ......|..++|.|.+.+.|.
T Consensus       147 ~C~~~n~~~~~~~~~~l~V~~~~~~p~~~~~~-~~~~~~g~~~~l~C~~~~~p~  199 (262)
T 3rjd_A          147 HCSGMGKHRYTSAGISVTVKELFPAPVLNASV-TSPLLEGNLVTLSCETKLLLQ  199 (262)
T ss_dssp             EEEEESSSEEEEECEEEEEECSSCCCEEEESS-CSSEETTCCEEEEEECCCCCC
T ss_pred             EEEEeCCCCccccceEEEeccCCCCCeEeecC-ceeecCCCeEEEEeEcccCCC
Confidence            488888888888999999984   78887776 344577999999999999986

>3mtr_A N-CAM-1, NCAM-1, neural cell adhesion molecule 1; immunoglobulin domain, fibronectin type III repeat, CE adhesion; 1.80A {Homo sapiens}

Probab=97.13  E-value=0.00028  Score=44.71  Aligned_cols=35  Identities=26%  Similarity=0.359  Sum_probs=29.9

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..|||.|..+.. +.+..|..++|.|.+.+.|.+.|
T Consensus        16 ~~~~P~~~~p~~-~~~~~G~~v~l~C~~~g~p~p~i   50 (215)
T 3mtr_A           16 HMYAPKLQGPVA-VYTWEGNQVNITCEVFAYPSATI   50 (215)
T ss_dssp             CCEEEEEECCSE-EEECTTCCEEEEEEEEEESCCEE
T ss_pred             eecCCcccCCce-EEEECCCCEEEEEEEeecCCCEE
Confidence            568999965554 88899999999999999999865

>3qr2_A Basigin; CD147, EMMPRIN, immunoglobulin-like domain, beta sheet, STRU genomics, berkeley structural genomics center, BSGC, cell A; 2.30A {Homo sapiens} PDB: 3qqn_A

Probab=97.13  E-value=0.00052  Score=41.47  Aligned_cols=36  Identities=11%  Similarity=0.074  Sum_probs=30.1

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.-||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus        18 ~~~pP~~~~~p~~~~v~~G~~v~L~C~~~g~P~p~i   53 (137)
T 3qr2_A           18 GSHMAGFVQAPLSQQRWVGGSVELHCEAVGSPVPEI   53 (137)
T ss_dssp             ---CCEEEECCCCEEEETTSCEEEEEEEECSSCCEE
T ss_pred             CCCCCeEEcCCCCEEEeCCCCEEEEEEEeeecCCeE
Confidence            346899998888888899999999999999998865

>2edj_A Roundabout homolog 2; KIAA1568 protein, beta sandwich, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=97.12  E-value=0.0003  Score=40.05  Aligned_cols=35  Identities=17%  Similarity=0.053  Sum_probs=30.3

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         6 ~~~P~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~v   40 (100)
T 2edj_A            6 SGPPIILQGPANQTLAVDGTALLKCKATGDPLPVI   40 (100)
T ss_dssp             CSSCEEEECCCCEEEESSSEEEECCEEECSSCCEE
T ss_pred             CCCCEEEeCcCCEEEcCCCcEEEEEEEEEcCCCEE
Confidence            45888988877778889999999999999998864

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=97.11  E-value=0.00063  Score=46.80  Aligned_cols=50  Identities=10%  Similarity=0.001  Sum_probs=39.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .|.+.+.+...++++.|.|.++|..-.-.+. ....|..+ |.|.+++. |.+
T Consensus        75 ~C~a~n~~~~~~~~~~ltV~~~P~~~~i~~~-~~~~g~~~-l~C~a~g~~P~~  125 (210)
T 1gsm_A           75 VCVGSCGGRTFQHTVQLLVYAFPNQLTVSPA-ALVPGDPE-VACTAHKVTPVD  125 (210)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCSEEEEESS-SBCTTCCE-EEEEEEEEBCCC
T ss_pred             EEEEEeCCCceEEEEEEEEEecCCCcEEccc-eEEeCCce-EEEEeCCCCCCC
Confidence            5888888888899999999999976554343 44568888 99999996 654

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=97.11  E-value=0.00061  Score=42.20  Aligned_cols=48  Identities=13%  Similarity=0.116  Sum_probs=39.7

Q ss_pred             hcCcCCC-ccceeeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+. +...+..+.|.|.++   |.|......  ...|..++|.|.+.+.|
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~i~~~~~~--~~~g~~v~l~C~~~~~p  138 (208)
T 3r4d_A           87 TLDMTDENYRRTQATVRFHVHQPVTQPFLQVTNTT--VKELDSVTLTCLSNDIG  138 (208)
T ss_dssp             EEEEECSSCEEEEEEEEEEEECCCCCCEEEESCSS--CCTTCCEEEEEECSCTT
T ss_pred             EEEEEcccCceeEEEEEEEeccCCCCCEEecCCce--EeeCCCEEEEEECCCCC
Confidence            4666666 477888999999888   888887666  78899999999999977

>3dmk_A DOWN syndrome cell adhesion molecule (dscam) ISOF 1.30.30, N-terminal eight IG domains...; immunoglobulin domain; HET: NAG NDG; 4.19A {Drosophila melanogaster}

Probab=97.11  E-value=0.00066  Score=51.06  Aligned_cols=54  Identities=7%  Similarity=-0.051  Sum_probs=48.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|+|..||.+.+..+......|..++|.|.+.+.|.+.|
T Consensus       322 ~C~a~n~~g~~~~~~~l~V~~~~~~~~~~~~~~v~~G~~v~l~C~~~g~p~~~v  375 (816)
T 3dmk_A          322 LCVVNNSVGGESVETVLTVTAPLSAKIDPPTQTVDFGRPAVFTCQYTGNPIKTV  375 (816)
T ss_dssp             EEEEECSSCEEEEEEEEEECEEEEEEEESSEEECCTTSCEEEEEEEEEECCCEE
T ss_pred             EEEEEcCCCceEEEEEEEEcCCCceeeCCCceEecCCCCEEEEEEEeccCCCEE
Confidence            488888877788999999999999998888888899999999999999998865

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=97.11  E-value=0.00074  Score=43.43  Aligned_cols=53  Identities=8%  Similarity=0.028  Sum_probs=38.5

Q ss_pred             cCcCCC--ccceeeeEEEEeecC---------------CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKD--KEEVRRRRRRNQKNL---------------PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~--~~pvs~~I~L~V~yp---------------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.+.  .........|.|..+               |.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus        98 C~~~n~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v  167 (247)
T 2ghw_B           98 CARDRSYYLDYWGQGTLVTVSSGGGGSGGGGSGGGGSETTLTQSPATLSLSPGERATLSCRASQSVRSNL  167 (247)
T ss_dssp             EEEEETTEEEEECCCEEEEECSCC------------CCCCEEEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             EeeeccCCccccCCceEEEEecccccccccccCCCCcceEEEccCCEEEecCCCcEEEEEEeCCCccceE
Confidence            666665  222344567888754               55776666778889999999999999997754

>2wim_A N-CAM 2, NCAM2, neural cell adhesion molecule 2; cell membrane, transmembrane, immunoglobulin; HET: NDG NAG; 3.00A {Homo sapiens}

Probab=97.11  E-value=0.00019  Score=46.51  Aligned_cols=54  Identities=15%  Similarity=0.084  Sum_probs=43.3

Q ss_pred             hcCcCCCc-cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDK-EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~-~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.. ...++.+.|+|..+|.+....+.+....|..++|.|.+.+.|.+.|
T Consensus        76 ~C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v  130 (291)
T 2wim_A           76 RCQATDAKGQTQEATVVLEIYQKLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV  130 (291)
T ss_dssp             EEEEECSSSCEEEEEEEEEEECCCBCCSCCCSEEEETTSCEEECCCCBCSSCCEE
T ss_pred             EEEEecccCceEEEEEEEEecCCcceEeCCCChhhcCCCCEEEEEEEccCCCCEE
Confidence            36666653 3346889999999999887766677789999999999999998764

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=97.08  E-value=0.00019  Score=52.83  Aligned_cols=54  Identities=9%  Similarity=0.025  Sum_probs=20.6

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec---ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER---SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~---~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|+|.++|.|.+..   +.+....|..++|.|.+.++|.+.|
T Consensus       306 ~C~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v  362 (772)
T 3v2a_R          306 TCAASSGLMTKKNSTFVRVHEKPFVAFGSGMESLVEATVGERVRIPAKYLGYPPPEI  362 (772)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCC---------------------------------
T ss_pred             EEEEEcCCcceeEEEEEEEeCCCeeEeccCCCCcEEEcCCCcEEEEEEEeeeCCCeE
Confidence            47777777778899999999999987653   4566788999999999999998875

>2cqv_A MLCK, myosin light chain kinase, smooth muscle and non- muscle isozymes; IG fold, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=97.08  E-value=0.00038  Score=40.77  Aligned_cols=34  Identities=15%  Similarity=-0.026  Sum_probs=29.7

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         6 ~pp~i~~~~~~~~v~~G~~v~l~C~~~g~p~p~i   39 (114)
T 2cqv_A            6 SGPQIIQFPEDQKVRAGESVELFGKVTGTQPITC   39 (114)
T ss_dssp             CCCEESCCCCSEEEETTCCEEEEEEEESSSSCEE
T ss_pred             CCCEEEeCCCCeEEeCCCeEEEEEEEEcCCCCEE
Confidence            4788888777888899999999999999998865

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=97.08  E-value=0.00042  Score=43.44  Aligned_cols=50  Identities=10%  Similarity=-0.001  Sum_probs=39.0

Q ss_pred             cCcCCCcc--ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDKE--EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~~--pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |.+.+...  .....+.|.|.    .+|.|.+..+......|..++|.|.+.+.|.
T Consensus        85 C~~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p  140 (211)
T 3tv3_L           85 CGSLVGNWDVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFYP  140 (211)
T ss_dssp             EEEEETTTEEEECCCEEEEECCSCCBCCEEEEECCCHHHHHTTCEEEEEEEEEEBS
T ss_pred             EEEecCCCceeECCCceEEEeCCCCcCCeeEecCCchhhhcCCCeEEEEEeeeecC
Confidence            66666554  56777899999    8999998765444457999999999999754

>1c5d_H Monoclonal antibody against the main immunogenic the human muscle acetylcholine receptor...; immunoglobulin, immune system; 2.40A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 2arj_H 3b9k_H* 2gk0_H 2gjz_H 1fn4_B 3mj8_H 3mj9_H*

Probab=97.07  E-value=0.00071  Score=43.34  Aligned_cols=51  Identities=12%  Similarity=0.046  Sum_probs=35.9

Q ss_pred             cCcCCCc---cceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDK---EEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~---~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |...+.+   ......+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus        95 C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  153 (215)
T 1c5d_H           95 CTREDGWNYFDYWGPGTMVTVSSAQTTAPSVYPLAPGCGDTTSSTVTLGCLVKGYFPEP  153 (215)
T ss_dssp             EEECCSSSCSCCBCCCEEEEECSSCCBCCCEEEECCCSSCCCCSSEEEEEEEEEEBSSC
T ss_pred             EEEecCCcccceEcCCEEEEecCCCCCCCeEEeccCChhhccCCcEEEEEEEeeeEcCC
Confidence            5555543   123345788887    57899876544445679999999999998 876

>1pz5_B Heavy chain of FAB (SYA/J6); antibody-antigen structure, peptide-carbohydrate mimicry, VA design, immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1m7d_B* 1m71_B* 1m7i_B* 1r24_B 1uz6_F 1uz8_B* 1clz_H*

Probab=97.06  E-value=0.0008  Score=42.70  Aligned_cols=51  Identities=12%  Similarity=0.061  Sum_probs=36.2

Q ss_pred             cCcCCCcc---ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDKE---EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~~---pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |.+.+.+.   .....+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus        98 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  156 (220)
T 1pz5_B           98 CTRGGAVGAMDYWGQGTSVTVSSATTTAPSVYPLVPGCSDTSGSSVTLGCLVKGYFPEP  156 (220)
T ss_dssp             EEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCSCCSCSSSEEEEEEEEEEBSSC
T ss_pred             EEEecCCcccceECCCEEEEEccCCCCCCeEEEcccccccCCCCcEEEEEEEEEEeCCC
Confidence            55555431   12245677776    68998876544445789999999999998 887

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=97.05  E-value=0.00011  Score=50.17  Aligned_cols=51  Identities=10%  Similarity=0.010  Sum_probs=42.6

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEee-----eCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-----EPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-----~P~a~V   69 (70)
                      .|.+.+.+..+...+.|.|.++|.+.   +.+.+.+|..++|.|.+.+     +|.+.|
T Consensus       158 ~C~a~~~~~~~~~~~~l~v~~~p~~~---~~~~~~~G~~v~l~C~~~~~~~~~~P~p~i  213 (363)
T 1wio_A          158 TCTVLQNQKKVEFKIDIVVLAFQKAS---SIVYKKEGEQVEFSFPLAFTVEKLTGSGEL  213 (363)
T ss_dssp             EEEEEETTEEEEECCEECEECCSCSE---EEEEEETBCCEEEECCCCCCCCSSCEEEEE
T ss_pred             EEEEecCCCeEEEEEEEEEecCCCCC---CceEEecCCEEEEEEEEecccccCCCceeE
Confidence            48888889999999999999888865   5677788999999999988     666543

>3ejj_X Macrophage colony-stimulating factor 1 receptor; growth factor-receptor complex, receptor tyrosine kinase, CY 4-helix bundle, ATP-binding; HET: NAG; 2.40A {Mus musculus} PDB: 4exp_X*

Probab=97.03  E-value=0.00084  Score=43.42  Aligned_cols=52  Identities=17%  Similarity=0.079  Sum_probs=39.5

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeE-EEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEI-EVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI-~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.....+..+.|.|.++|.+ ....+.+....|..+.|.|.+.+.|.+
T Consensus        67 ~C~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~L~C~~~~~~~~  119 (289)
T 3ejj_X           67 RCTELEDPMAGSTTIHLYVKDPAHSWNLLAQEVTVVEGQEAVLPCLITDPALK  119 (289)
T ss_dssp             EEECCC-----CEEEEEEECCSSCSEEESCSEEEEETTSCEEECEEESCGGGG
T ss_pred             EEEEeccCCcceeEEEEEEeCCCcceecccceEEEecCCceEeEEEccCCCcc
Confidence            4777777677899999999999984 555677788899999999999998765

>1q9r_B S25-2 FAB (IGG1K) heavy chain; antigen-binding fragment, anti-carbohydrate, anti-LPS, antibody, immunoglobulin, KDO, complex, immune system; HET: KDA KDO; 1.45A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q9l_B 1q9k_B* 1q9q_B* 1q9v_B* 2r1w_B* 2r1x_B* 2r1y_B* 2r2b_B* 2r2e_B* 2r2h_B* 3bpc_B* 3sy0_B* 3t4y_B* 3t65_B* 2r23_B* 1q9t_B* 3t77_B* 3okl_B* 3okk_B* 3okm_B ...

Probab=97.02  E-value=0.001  Score=42.30  Aligned_cols=51  Identities=12%  Similarity=0.046  Sum_probs=35.6

Q ss_pred             cCcCCCcc-----ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDKE-----EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~~-----pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |.+.+...     .....+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus        98 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  158 (222)
T 1q9r_B           98 CARDHDGYYERFSYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  158 (222)
T ss_dssp             EEECCCSSCCSCCCBCCCEEEEECSSCCBCCEEEEECCCSCCCCSSEEEEEEEEEEEBSSC
T ss_pred             EEEeccCCcccceEeCCceEEEeccCCCCCCeEEEccccccccCCCcEEEEEEEccEECCC
Confidence            66665442     22345677776    57888876544445679999999999997 887

>3laf_A Deleted in colorectal cancer; netrin-1 receptor, immunoglobulin superfamily, horseshoe, AP; HET: NAG BMA; 2.40A {Rattus norvegicus}

Probab=97.02  E-value=0.00026  Score=47.96  Aligned_cols=54  Identities=13%  Similarity=0.071  Sum_probs=45.3

Q ss_pred             hcCcCC--CccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEK--DKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~--~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+  .+...+..+.|.|..||.+....+.+....|..+.|.|.+.+.|.+.|
T Consensus        98 ~C~~~~~~~~~~~s~~~~l~v~~p~~~~~~~~~~~~~~G~~v~l~C~~~~~p~~~v  153 (403)
T 3laf_A           98 QCEASLGDSGSIISRTAKVMVAGPLRFLSQTESITAFMGDTVLLKCEVIGDPMPTI  153 (403)
T ss_dssp             EEEEECGGGCEEECCCEEEEECCCCEECSCCCCEEEETTSCEEECCCEECSSCCEE
T ss_pred             EEEEEeCCCccEEEEEEEEEecCCCccccCCCcEEEEcCCeEEEEEEEcccCCCeE
Confidence            477763  455567889999999999988888888899999999999999998754

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=97.02  E-value=0.00063  Score=46.87  Aligned_cols=52  Identities=12%  Similarity=0.029  Sum_probs=38.5

Q ss_pred             hcCcCCCcc-----ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDKE-----EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~~-----pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .|.++++..     .......|.|.    ++|.|....+......|..++|.|.+.++ |.+
T Consensus       313 ~C~a~n~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~~  374 (438)
T 1qgc_4          313 YCVRREDGGDEGFAYWGQGTVVTVSAAKTTPPSVYPLAPGSAAAAASMVTLGCLVKGYFPEP  374 (438)
T ss_dssp             EEEECCSSSCCCCCSBCCCEEEEECSSCCBCCEEEEECCCGGGCCSSEEEEEEEEESCBSSC
T ss_pred             EEEEEccCCCccceeeCCCEEEEEecCCCCCCeEEEcCcccccccCCcEEEEEEeccccCCC
Confidence            377776322     33456678887    68988877655556789999999999998 876

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=97.01  E-value=0.00023  Score=43.99  Aligned_cols=54  Identities=13%  Similarity=0.017  Sum_probs=39.7

Q ss_pred             hcCcCCCcc-ceeeeEEEEeec-CCeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQKN-LPEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~y-pPeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+... ..+..+.|.|.+ +|.+....+.+....|..++|.|.+ .+.|.+.|
T Consensus        88 ~C~~~n~~g~~~~~~~~l~V~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~p~~~v  144 (212)
T 2v9r_A           88 VCVARNYLGEAVSHDASLEVAILRDDFRQNPSDVMVAVGEPAVMECQPPRGHPEPTI  144 (212)
T ss_dssp             EEEEEETTEEEECCCEEEEECEECSSCSBCCCCEEEETTSCEEEECBCCCEESCCEE
T ss_pred             EEEEECCCCceeecceEEEEEeccccceeCCCceEecCCCcEEEEEecCCCCCCCEE
Confidence            366665433 346788999988 4455555556677889999999999 99998864

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=97.01  E-value=0.00035  Score=45.15  Aligned_cols=52  Identities=12%  Similarity=0.189  Sum_probs=36.1

Q ss_pred             hcCcCCCccc--eeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         16 EEEPEKDKEE--VRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p--vs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      .|.+.+.+..  ..+.+.+  .+.++|.|.+..+-.....|..++|.|.+.+ +|.+
T Consensus        92 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~g~~P~~  148 (218)
T 2rgs_A           92 KCKVNNKDLPSPIERTISKIKGLVRAPQVYILPPPAEQLSRKDVSLTCLVVGFNPGD  148 (218)
T ss_dssp             EEEEEETTCSSCEEEEECCCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSC
T ss_pred             EEEEECCcCCCcceEEEeecCCCCCCCEEEEECCChHHhcCCceEEEEEEEeeeCCC
Confidence            3666655433  3555544  7889999987654433345999999999999 5654

>2dm2_A Palladin; beta-sandwich, KIAA0992, actin-associated scaffold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=97.01  E-value=0.00027  Score=41.01  Aligned_cols=35  Identities=20%  Similarity=0.298  Sum_probs=30.0

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .-||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         6 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~g~p~p~v   40 (110)
T 2dm2_A            6 SGAPFFEMKLKHYKIFEGMPVTFTCRVAGNPKPKI   40 (110)
T ss_dssp             SCCCCBSSCCCCEEEETTCCEEEEEEBCCSSCCEE
T ss_pred             CCCCEEEecCcCeEEeCCCeEEEEEEEEecCCCEE
Confidence            34788888877888899999999999999998865

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=97.00  E-value=0.00093  Score=45.54  Aligned_cols=54  Identities=15%  Similarity=0.022  Sum_probs=40.4

Q ss_pred             hcCcCCCccceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CC-CCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PH-ADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~-a~V   69 (70)
                      .|.+.+........+.|.|.    .+|.|....+......|..++|.|.+.++ |. +.|
T Consensus        95 ~C~~~n~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~~~v  154 (344)
T 1za6_B           95 FCTRSLNMAYWGQGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEPVTV  154 (344)
T ss_dssp             EEEETTTTCEECCCEEEEECSSCCBCCEEEEECCSCTTTSSSEEEEEEEEEEEBSSCCCE
T ss_pred             EEEEecCcceecCcEEEEEecCCCCCCeEEEccccccccCCCcEEEEEEEeeEECCCeEE
Confidence            47777755455567788888    68888876655556789999999999998 54 443

>2ocw_A Polymeric-immunoglobulin receptor; SC, secretory, antibody, immunity, immune system; NMR {Homo sapiens} PDB: 3chn_S 3cm9_S 3chn_J 3cm9_J

Probab=97.00  E-value=0.00086  Score=48.19  Aligned_cols=51  Identities=8%  Similarity=0.006  Sum_probs=44.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+.....+..+.|.|..+|.+......+...+|..++|.|.+.+.|.
T Consensus        91 ~C~~~n~~~~~~~~~~l~V~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~  141 (585)
T 2ocw_A           91 KCGLGINSRGLSFDVSLEVSQGPGLLNDTKVYTVDLGRTVTINCPFKTENA  141 (585)
T ss_pred             EEEcccCCCCceEEEEEEEecCccccCCCccEEEEcCCCEEEEEEecCCCC
Confidence            477777776778999999999999998888888899999999999997654

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=97.00  E-value=0.0016  Score=43.92  Aligned_cols=49  Identities=10%  Similarity=0.026  Sum_probs=36.9

Q ss_pred             hcCcCC------CccceeeeEEEEeecCC----eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEK------DKEEVRRRRRRNQKNLP----EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~------~~~pvs~~I~L~V~ypP----eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+      ....+++.+.|.|.++|    -+- ..+.+...+|..++|.|.+.+.|
T Consensus       198 ~C~a~n~~~~g~~~~~~s~~~~l~V~~~~~~~~~~~-~~~~~~v~~G~~~~l~C~~~g~p  256 (329)
T 3oq3_B          198 DCYVHYDDVRIKNDIVVSRCKILTVIPSQDHRFKLI-LDPKINVTIGEPANITCTAVSTS  256 (329)
T ss_dssp             EEEEEECCTTSSSCEEEEEEEEEEEECCCCCCEEEE-CCSEEEECTTSCEEEEEEEEETT
T ss_pred             EEEEEecccCCCceeEEEeeEEEEEECCCCCCCcee-cCCeeEEecCCCEEEEEEEEECC
Confidence            366664      34455667999999987    333 44457778999999999999998

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=96.99  E-value=0.00047  Score=43.71  Aligned_cols=53  Identities=11%  Similarity=0.084  Sum_probs=39.0

Q ss_pred             cCcCCCccc-----eeeeEEEEeecC---CeEEEec-ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKDKEE-----VRRRRRRNQKNL---PEIEVER-SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~~~p-----vs~~I~L~V~yp---PeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.+....     +++.+.|.|..+   |.+.+.. +.+...+|..++|.|.+.+.|.|.|
T Consensus       107 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~v~~g~~v~L~C~~~g~p~p~v  168 (250)
T 2fbo_J          107 CQVAQWSIRTEFGLDAKSVVLKVTGHTPSNNVHVSTAEVVQVDEGNDITMTCPCTDCANANV  168 (250)
T ss_dssp             EEEECTTCCSGGGEEEEEEEEEETTTSCCSCCEECCCSEEECCTTCCEEECCCEESCTTCEE
T ss_pred             EEeccCccCCcccccceeEEEEEeccCCCCeEEEecCceEEecCCCcEEEEEEecCCCCCee
Confidence            555554332     367899999985   6666643 3577778999999999999998854

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=96.95  E-value=0.0011  Score=42.20  Aligned_cols=52  Identities=12%  Similarity=0.041  Sum_probs=34.2

Q ss_pred             hcCcCCCccce-eeeEEEEeec--CCeEEEe-cceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEV-RRRRRRNQKN--LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pv-s~~I~L~V~y--pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.+... +..+.|+|.-  +|.+.+. .+.+...+|..++|.|.+.+.|.+
T Consensus        80 ~C~a~n~~~~~~s~~~~l~v~~~~~p~~~~~~~~~~~v~~G~~v~L~C~~~g~p~~  135 (213)
T 2x1w_L           80 FCEAKINDESYQSIMYIVVVVGYRIYDVVLSPSHGIELSVGEKLVLNCTARTELNV  135 (213)
T ss_dssp             EEEEC----CEECCCEEEEECBCCEEEEEEESCSCEEEETTCCEEEEEEEEECTTB
T ss_pred             EEEEEECCeeEEEEEEEEEEeCCcccceEEcCCCCeEEcCCCCEEEEEEEECCCCC
Confidence            47777655543 3347888854  5666665 344577899999999999997754

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=96.94  E-value=0.00022  Score=44.62  Aligned_cols=53  Identities=17%  Similarity=0.119  Sum_probs=40.5

Q ss_pred             cCcCCCc-cceeeeEEEEeec-CCeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         17 EEPEKDK-EEVRRRRRRNQKN-LPEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        17 ~~~~~~~-~pvs~~I~L~V~y-pPeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      |.+.+.. ...++.+.|.|.+ +|.+....+.+....|..++|.|.+ .+.|.+.|
T Consensus        86 C~~~n~~g~~~~~~~~l~v~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~g~p~~~v  141 (217)
T 2vr9_A           86 CVAKNRVGQAVSRHASLQIAVLRDDFRVEPKDTRVAKGETALLECGPPKGIPEPTL  141 (217)
T ss_dssp             EEEEETTEEEECCCEEEEECEECCSCSBCCCCEEECTTSCEEECCBCCCEESCCEE
T ss_pred             EEEecCCCccccccceEEEEEeCCCcEECCCccEEcCCCeEEEEEECCCCCCCCeE
Confidence            5565433 3346678888887 6777777667778899999999999 99998864

>3u83_A Poliovirus receptor-related protein 1; nectin-1, hinge region plasiticity, cell adhesion; HET: PG6; 2.50A {Homo sapiens} PDB: 3alp_A* 3u82_B 4fmf_A* 3sku_E* 2l7j_A

Probab=96.94  E-value=0.0019  Score=42.73  Aligned_cols=54  Identities=9%  Similarity=0.049  Sum_probs=41.7

Q ss_pred             hcC-cCCCccceeeeEEEEeecCCeEEE--ecceEEeccC---CcEEEEEE-EeeeCCCCC
Q psy15736         16 EEE-PEKDKEEVRRRRRRNQKNLPEIEV--ERSWVHSGEG---YEAQLVCI-VHAEPHADP   69 (70)
Q Consensus        16 ~~~-~~~~~~pvs~~I~L~V~ypPeI~v--~~~~Vha~~G---~~a~L~Ci-V~A~P~a~V   69 (70)
                      .|. ..+.....+..+.|+|.++|.+.+  ..+.+....|   ..+.|.|. +.+.|.+.|
T Consensus       108 ~C~~~~~~~~~~~~~~~l~V~~~p~~~~~~~~~~~~~~~g~~~~~~~l~C~~~~~~p~~~i  168 (331)
T 3u83_A          108 ICEFATFPTGNRESQLNLTVMAKPTNWIEGTQAVLRAKKGQDDKVLVATCTSANGKPPSVV  168 (331)
T ss_dssp             EEEEEEETTEEEEEEEEEEEEBCCEEEEEECSSCEEECTTCCCCEEEEEEEEEEEBSCCEE
T ss_pred             EEEEEecCCCccEEEEEEEEecCCcceeecCCCceeecCCCccceEEEEEEecCCcCCceE
Confidence            355 444455688999999999999965  4556667778   77999997 999998865

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=96.94  E-value=0.00098  Score=41.67  Aligned_cols=52  Identities=12%  Similarity=-0.019  Sum_probs=39.9

Q ss_pred             hcCcCCC-ccceeeeEEEEe---ecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQ---KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V---~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+. +......+.|.|   ..+|.|.+..+......|..++|.|.+.+.|.+
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~~~~v~l~C~~~g~~p~  142 (213)
T 3r06_A           87 YCQQYYNYPWTFGPGTKLEIKRADAKPTVSIFPPSSEQLGTGSATLVCFVNNFYPK  142 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             EEecccCCceEEcCCceEEEeccCCCceeeeeCCCceecCCCCcEEEEEEeeecCC
Confidence            3777665 334566778888   899999987666666678899999999998753

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.93  E-value=0.00041  Score=46.44  Aligned_cols=50  Identities=14%  Similarity=0.066  Sum_probs=36.4

Q ss_pred             hcCcCCCcc---ceeee--EEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKE---EVRRR--RRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~---pvs~~--I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+...   +....  +.+.|.+||.|.+....  ..+|..++|.|.+.+.|.+
T Consensus       196 ~C~a~n~~~~~~~~~~~~~~~~~v~~~P~i~~~~~~--~~~G~~v~l~C~~~g~~p~  250 (327)
T 2wng_A          196 ICEVAHVTLQGDPLRGTANLSETIRVPPTLEVTQQP--VRAENQVNVTCQVRKFYPQ  250 (327)
T ss_dssp             EEEEECTTSCSCCEEEEEEGGGTBCBCCEEEEEEEC--CSSTTCCEEEEEEEEEBSS
T ss_pred             EEEEeccccCCCcccceEEeccccCCCCEEEEecCC--cCCCCcEEEEEEEccccCC
Confidence            477766432   23334  44478999999988665  5789999999999996544

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=96.93  E-value=0.00043  Score=43.48  Aligned_cols=51  Identities=12%  Similarity=-0.060  Sum_probs=29.1

Q ss_pred             hcCcCCCcc--ceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKDKE--EVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .|.+.+...  ..+..+.|.|.+   +|.|....+ ....+|..++|.|.+.+.| +.
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~p-~~  129 (196)
T 2d3v_A           74 RCYYYSPAGWSEPSDPLELVVTGFYNKPTLSALPS-PVVTSGENVTLQCGSRLRF-DR  129 (196)
T ss_dssp             EEEEEETTEECBCCCCEEEEEECSSCCCEEEC------------CEEEEEESSCC-SE
T ss_pred             EEEEeCCCCcCCcCccEEEEecCCCCCCeEEccCC-ccccCCCcEEEEEEcCCCC-CE
Confidence            366654422  235678888888   688887643 3567899999999999998 54

>2o26_X MAST/stem cell growth factor receptor; stem cell factor, receptor tyrosine kinase, class III, recep ligand complex, cytokine, 4-helix bundle; HET: NAG FUL MAN NDG; 2.50A {Mus musculus}

Probab=96.92  E-value=0.0003  Score=46.06  Aligned_cols=50  Identities=8%  Similarity=0.007  Sum_probs=41.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC-CCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH-ADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~-a~V   69 (70)
                      .|.+.+ |.  +..+.|.|.++|.+....+.+....|..+.|.|.+.+ |. +.|
T Consensus        73 ~C~~~n-g~--~~~~~l~V~~~~~~~~~~~~~~~~~g~~v~l~C~~~~-p~~~~v  123 (290)
T 2o26_X           73 TCSNSN-GL--TSSIYVFVRDPAKLFLVGLPLFGKEDSDALVRCPLTD-PQVSQY  123 (290)
T ss_dssp             EEEESS-SC--EEEEEEEEECSSCCBCCCCCEEEETTSCEEECCCBSC-CSCEEE
T ss_pred             EEEeeC-Cc--cEEEEEEEeCCCcccccccceEEecCCeEEEeCcCCC-CCCceE
Confidence            477777 43  7889999999999888777888889999999999995 76 543

>3bae_H WO2 IGG2A FAB fragment heavy chain; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} SCOP: b.1.1.2 PDB: 3bkc_H 3bkj_H 3bkm_H 3mck_H 2r0w_H* 2iqa_H 2iq9_H 1ggi_H 1ggb_H 1ggc_H 3eys_H* 2ipt_H 2ipu_H 3eyu_H* 2r0z_H* 3rkd_H 1r0a_H* 1n5y_H* 1n6q_H* 1t03_H* ...

Probab=96.91  E-value=0.0011  Score=42.82  Aligned_cols=40  Identities=15%  Similarity=0.211  Sum_probs=29.2

Q ss_pred             eeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      +.+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus       117 ~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~g~~P~p  161 (228)
T 3bae_H          117 QGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP  161 (228)
T ss_dssp             CCEEEEECSCCCBCCEEEEECC-----CCSEEEEEEEEEEEBSSC
T ss_pred             CcEEEEecCCCCCCCEEEEecccccccCCCCEEEEEEEccEeCCC
Confidence            45788887    68999876654445789999999999997 776

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.91  E-value=0.0002  Score=47.61  Aligned_cols=54  Identities=11%  Similarity=0.114  Sum_probs=42.1

Q ss_pred             hcCcCCCccceeeeEEEEeec----CCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN----LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y----pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|.+    +|.+... ...+....|..++|.|.+.+.|.+.|
T Consensus       196 ~C~a~n~~g~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~p~p~v  254 (334)
T 1ry7_B          196 TCVVENKFGSIRQTYTLDVLERSPHRPILQAGLPANQTAVLGSDVEFHCKVYSDAQPHI  254 (334)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCSSCBCCTTCSCCEEEESSCCEEECCCCBCSSCEEE
T ss_pred             EEEEEeCCCCEEEEEEEEEecCCCCCCceEecCCCceEEeCCCCEEEEEEEecCCCCeE
Confidence            577777777788999999987    4556542 24456678999999999999998754

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=96.88  E-value=0.00067  Score=42.21  Aligned_cols=54  Identities=11%  Similarity=0.148  Sum_probs=41.3

Q ss_pred             hcCcCCCccceeeeEEEEeec----CCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN----LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y----pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|..    +|.+... ...+....|..++|.|.+.+.|.+.|
T Consensus        92 ~C~~~n~~~~~~~~~~l~V~~~~~~~p~~~~~~~~~~~~~~g~~~~l~C~~~~~p~p~v  150 (231)
T 3ojm_B           92 TCVVENEYGSINHTYHLDVVERSRHRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI  150 (231)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCCCEECTTCSCCEEEETTCCEEEECCEECSSCCEE
T ss_pred             EEEEecccCcccccEEEEEEcCCCCCCceeeccCCceEEEeCCcEEEEEEEecCCCCEE
Confidence            477877777788889999986    4444432 34566688999999999999998854

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=96.87  E-value=0.00025  Score=47.57  Aligned_cols=54  Identities=13%  Similarity=0.074  Sum_probs=30.5

Q ss_pred             hcCcCCC--ccc--eeeeEEEEeec------CCeEEEecc--eEEeccCCcEEEEEEEee----eCCCCC
Q psy15736         16 EEEPEKD--KEE--VRRRRRRNQKN------LPEIEVERS--WVHSGEGYEAQLVCIVHA----EPHADP   69 (70)
Q Consensus        16 ~~~~~~~--~~p--vs~~I~L~V~y------pPeI~v~~~--~Vha~~G~~a~L~CiV~A----~P~a~V   69 (70)
                      .|.+.+.  +..  +++.+.|+|..      +|.|..+..  .+....|..++|.|.+.+    .|.+.|
T Consensus       193 ~C~a~n~~~g~~~~~~~~~~l~v~~~~~~~~~p~i~~~~~~~~~~v~~G~~v~l~C~~~~~~~g~p~p~v  262 (349)
T 4dep_C          193 TCVVTYPENGRTFHLTRTLTVKVVGSPKNAVPPVIHSPNDHVVYEKEPGEELLIPCTVYFSFLMDSRNEV  262 (349)
T ss_dssp             EEEEEEEETTEEEEEEEEEEEEEECCGGGCCSCEEC----------------CCCEEEEECCCTTCCCEE
T ss_pred             EEEEEEeeCCEEEEEEEEEEEEEEccCCCCCCCeEecCCCceeEEEecCCcEEEEEEEEEccCCCCCCEE
Confidence            4677664  343  68999999988      799877753  337788999999999995    566654

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=96.87  E-value=0.0005  Score=43.03  Aligned_cols=51  Identities=14%  Similarity=0.143  Sum_probs=38.2

Q ss_pred             cCcCCCcc-----ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         17 EEPEKDKE-----EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        17 ~~~~~~~~-----pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      |.+.+...     .....+.|.|.    .+|.|.+..+......|..++|.|.+.+ .|.+
T Consensus        92 C~~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~~~~~~~~~~~~~~~~v~L~C~~~g~~p~~  152 (218)
T 3s96_B           92 CGVGDTIKEQFVYVFGGGTKVTVLGQPKSTPTLTVFPPSSEELKENKATLVCLISNFSPSG  152 (218)
T ss_dssp             EEEEEEETTEEEEEECCCEEEEEESCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSC
T ss_pred             EEEecCCCCceeEEEcCcEEEEEecCCCCCceEEeeCCCcccccCCcEEEEEEECcccCCC
Confidence            66665543     45667889998    8999998655555566899999999999 4655

>3bfo_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1 (isoform 2); hydrolase, immunoglobulin domain, nucleus, protease; 1.15A {Homo sapiens}

Probab=96.84  E-value=0.0011  Score=37.34  Aligned_cols=33  Identities=21%  Similarity=0.168  Sum_probs=27.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|.+..+.+....|..+.|.|.+.+.|.+.+
T Consensus         3 ~~~i~~~p~~~~v~~G~~~~l~C~~~g~p~p~i   35 (91)
T 3bfo_A            3 KLQICVEPTSQKLMPGSTLVLQCVAVGSPIPHY   35 (91)
T ss_dssp             CCEEEECCCCEEECTTSCEEEECEEECSSCCEE
T ss_pred             ceEEEECCCccEecCCCcEEEEEEeccCCCCEE
Confidence            466666666677889999999999999998854

>1dee_B IGM RF 2A2; FAB-IBP complex 2.7A resolution binding outside the antigen combining site superantigen FAB VH3 specificity; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1hez_B 1adq_H

Probab=96.83  E-value=0.0013  Score=42.46  Aligned_cols=41  Identities=12%  Similarity=0.113  Sum_probs=31.1

Q ss_pred             eeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         27 RRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        27 s~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ...+.|+|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus       112 ~~~~~L~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  157 (223)
T 1dee_B          112 GQGTLVTVSSGSASAPTLFPLVSCENSNPSSTVAVGCLAQDFLPDS  157 (223)
T ss_dssp             CCCEEEEECSSCCBCCEEEEEECTTCCCSSSEEEEEEEEEEEBSSC
T ss_pred             cCcEEEEEccCCCCCCEEEEecCCcccCCCCcEEEEEEEEEEeCCC
Confidence            356788887    58898865433334689999999999998 765

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=96.82  E-value=0.0009  Score=46.89  Aligned_cols=52  Identities=13%  Similarity=0.151  Sum_probs=36.5

Q ss_pred             hcCcCCCccce--eeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDKEEV--RRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~~pv--s~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .|.+.+.....  .+.|.+  .+.++|.|.+..+......|..++|.|.+.++ |.+
T Consensus       321 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~~  377 (444)
T 1igt_B          321 KCKVNNKDLPAPIERTISKPKGSVRAPQVYVLPPPEEEMTKKQVTLTCMVTDFMPED  377 (444)
T ss_dssp             EEEEECTTCSSCEEEEEECCCCCCBCCEEEEECCCGGGTTSSEEEEEEEEEEEBSSC
T ss_pred             EEEEEcCCCCCceEEEEeccCCCCCCCEEEEeCCChHHccCCeEEEEEEEEeeeCCC
Confidence            47777765544  667766  88999999876554333345569999999995 544

>2oz4_A Intercellular adhesion molecule 1; IGSF domain, structural plasticity, cell-surface dimerizatio adhesion; HET: NAG FUC; 2.70A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 b.1.1.4 PDB: 1p53_A*

Probab=96.82  E-value=0.0015  Score=42.49  Aligned_cols=50  Identities=16%  Similarity=0.203  Sum_probs=39.1

Q ss_pred             hcCcCCCccceeeeEEEEeec--CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN--LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y--pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|+|..  +|.|......  ..+|..++|.|.+.  |.+.|
T Consensus        77 ~C~a~n~~~~~~~~~~l~V~~~p~p~~~~~~~~--v~~G~~v~l~C~~~--p~~~i  128 (265)
T 2oz4_A           77 TCAVILGNQSQETLQTVTIYSFPAPNVILTKPE--VSEGTEVTVKCEAH--PRAKV  128 (265)
T ss_dssp             EEEEEETTEEEEEEEEEEEECCCCCEEEESCSE--EETTCEEEEEEECC--TTSEE
T ss_pred             EEEEecCCCCcEEEEEEEEeCCCCceeecCCce--ecCCCcEEEEEEcc--CCCEE
Confidence            478888877788999999987  5677765554  45699999999998  77654

>2yd6_A PTPRD protein; hydrolase; HET: FLC; 1.35A {Homo sapiens} PDB: 2yd7_A 2yd2_A 2yd3_A 2yd4_A* 2yd8_A* 2yd5_A* 3pxh_A

Probab=96.81  E-value=0.00095  Score=42.13  Aligned_cols=36  Identities=14%  Similarity=0.196  Sum_probs=31.0

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +..||.|....+-+...+|..+.|.|.+.+.|.+.|
T Consensus         3 ~~~~P~~~~~p~~~~v~~G~~v~L~C~~~g~p~~~v   38 (212)
T 2yd6_A            3 GETPPRFTRTPVDQTGVSGGVASFICQATGDPRPKI   38 (212)
T ss_dssp             -CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCCCCeEEeCcceeEEecCCeEEEEEEEeeCCCCEE
Confidence            467899998877788899999999999999998864

>1e07_A Carcinoembryonic antigen; glycoprotein, CEA, tumour marker, immunoglobulin-fold; NMR {Homo sapiens} PDB: 2dks_A

Probab=96.80  E-value=0.0013  Score=48.17  Aligned_cols=54  Identities=17%  Similarity=0.143  Sum_probs=40.0

Q ss_pred             hcCcCCCcc-ceeeeEEEEeecCCeE-EEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQKNLPEI-EVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~ypPeI-~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+... ..+..+.|+|.++|.+ .+..+-.....|..++|.|.+.+.|.+.|
T Consensus       358 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~~~~g~~~~l~C~~~g~p~~~i  413 (642)
T 1e07_A          358 ECGIQNELSVDHSDPVILNVLYGPDDPTISPSYTYYRPGVNLSLSCHAASNPPAQY  413 (642)
T ss_pred             EEEEeCCCCCcceeeEEEEEEcCCCCCeecCCceEecCCCcEEEEEEcCccCCCeE
Confidence            466666544 3467799999999864 33333455678999999999999999865

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=96.80  E-value=0.00092  Score=43.66  Aligned_cols=54  Identities=17%  Similarity=0.131  Sum_probs=41.8

Q ss_pred             hcCcCCCccceeeeEEEEeec--------------------CCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN--------------------LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y--------------------pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|..                    +|.+... .+.+....|..++|.|.+.+.|.+.|
T Consensus       180 ~C~a~n~~g~~~~~~~l~v~~~~~~~~~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~g~~~~l~C~~~g~p~p~i  254 (317)
T 2y25_A          180 VMELFDGKTGHQKTVDLSGQAYDEAYAEFQRLKQAAIAEKNRARVLGGLPDVVTIQEGKALNLTCNVWGDPPPEV  254 (317)
T ss_dssp             EEEEECSSCEEEEEEEECHHHHHHHHHHHHHHHHHHHHTTTSCEEEEBCCSEEEEETTSBBCEEEEEECSSCCEE
T ss_pred             EEEEEeCCceEEEEEEEeeeeccccchhhcccCCcccCcCCCCcccccCCccEEEEcCCEEEEEEEEecCCCCEE
Confidence            477888777888888888752                    4555544 55677789999999999999998864

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=96.78  E-value=0.003  Score=41.13  Aligned_cols=46  Identities=7%  Similarity=-0.046  Sum_probs=36.3

Q ss_pred             ccceeeeEEEEeec---------------CCeEEEecceEEeccCCcEEEEEEEeeeCC-CC
Q psy15736         23 KEEVRRRRRRNQKN---------------LPEIEVERSWVHSGEGYEAQLVCIVHAEPH-AD   68 (70)
Q Consensus        23 ~~pvs~~I~L~V~y---------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~-a~   68 (70)
                      .........|.|..               +|.|....+.+.+.+|..++|.|.+.+.|. +.
T Consensus       120 ~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~~  181 (256)
T 3juy_B          120 MDVWGKGTTVIVSSGGGGSGGGGSGGGGSEIVLTQAPGTLSLSPGERATFSCRSSHSIRSRR  181 (256)
T ss_dssp             CCEECCCEEEEECSCC----------CCCCCCEEEECSEEEECTTSCEEEEEEESSCCTTCC
T ss_pred             eeEECCceEEeecCCcccccccccCCCcceeEEEecCCeEEEeCCCCEEEEEEECCCcCCee
Confidence            34455677889988               566777777888899999999999999875 44

>2xot_A Amphoterin-induced protein 1; cell adhesion, neuronal protein, neurite growth regulation; HET: NAG BMA; 2.00A {Mus musculus}

Probab=96.77  E-value=0.00057  Score=47.97  Aligned_cols=43  Identities=9%  Similarity=-0.088  Sum_probs=21.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+++....++..+.|+|..+|           ..|..++|.|.+.|+|.|.|
T Consensus       317 ~C~a~N~~g~~~~~~~l~V~~~~-----------~~g~~~~l~C~~~g~P~P~i  359 (361)
T 2xot_A          317 TCYAMGETFNETLSVELKVYNFT-----------LHGHHDTLNAAADPWSHPQF  359 (361)
T ss_dssp             EEEEECSSCEEEEEEEEEEESSC-----------CC------------------
T ss_pred             EEEEecCCCccEEEEEEEEEeee-----------ccCCceEEEEEeCCCCCCcc
Confidence            58899999999999999997755           56889999999999999986

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=96.77  E-value=0.0011  Score=41.53  Aligned_cols=49  Identities=14%  Similarity=0.053  Sum_probs=36.3

Q ss_pred             hcCcCCCc---cceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDK---EEVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~---~pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+..   ...+..+.|.|.+   +|.|..... ....+|..++|.|.+.+.|
T Consensus        74 ~C~a~n~~~g~~~~s~~~~l~V~~~~~~p~i~~~~~-~~v~~G~~v~L~C~~~~~~  128 (198)
T 1ugn_A           74 RCYYGSDTAGRSESSDPLELVVTGAYIKPTLSAQPS-PVVNSGGNVTLQCDSQVAF  128 (198)
T ss_dssp             EEEEEETTTEECCCCCCEEEEEECSSCCCEEEEESC-SEEETTCCEEEEEECSSCC
T ss_pred             EEEEECCCCCcccCCccEEEEEcccccCCccccCCc-cccCCCCcEEEEEecCCCC
Confidence            46665543   2446788999988   688887753 3456899999999999873

>3v2a_R Vascular endothelial growth factor receptor 2; IG-homology domain, vegfr-2, growth factor receptor, VEGF LI hormone-signaling protein complex, angiogenesis; 3.20A {Homo sapiens} PDB: 3v6b_R

Probab=96.76  E-value=0.00022  Score=52.56  Aligned_cols=53  Identities=15%  Similarity=0.141  Sum_probs=0.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....++.+.|+|..+|.|.+... ....+|..++|.|.+.+.|.+.|
T Consensus       529 ~C~a~N~~g~~~~~~~l~V~~~p~i~~~p~-~~~~~G~~v~l~C~~~~~p~~~v  581 (772)
T 3v2a_R          529 KCEAVNKVGRGERVISFHVTRGPEITLQPD-MQPTEQESVSLWCTADRSTFENL  581 (772)
T ss_dssp             ------------------------------------------------------
T ss_pred             EEEEEccccccceeEEEEEECCceeeccCC-cccccCCceEEEEeccCCCCCCc
Confidence            588888888889999999999999988754 34678999999999999998765

>4dkd_C Macrophage colony-stimulating factor 1 receptor; dimeric four-helix bundle cytokine, receptor tyrosine kinase glycosylation; HET: NAG BMA; 3.00A {Homo sapiens}

Probab=96.75  E-value=0.0009  Score=43.36  Aligned_cols=50  Identities=18%  Similarity=0.043  Sum_probs=38.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeE-EEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEI-EVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI-~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+.....+..+.|.|..+|.+ ....+.+....|..+.|.|.+.+ |.
T Consensus        67 ~C~~~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~v~~g~~v~l~C~~~~-~~  117 (292)
T 4dkd_C           67 RCTEPGDPLGGSAAIHLYVKDPARPWNVLAQEVVVFEDQDALLPCLLTD-PV  117 (292)
T ss_dssp             EECCCC----CCEEECCEECCSSCCEEESCSEEEEETTSCEECCEEESS-GG
T ss_pred             EEEEccCCCCcceEEEEEEcCccccccccCCeEEEcCCCcEEEeeeCCC-CC
Confidence            5888887777799999999999985 44455677789999999999998 54

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=96.74  E-value=0.00031  Score=46.93  Aligned_cols=53  Identities=17%  Similarity=0.171  Sum_probs=42.4

Q ss_pred             hcCcCCCcc----ceeeeEEEEee-----cCCeEEEecceEEeccCCcEEEEEEE---eeeC-CCC
Q psy15736         16 EEEPEKDKE----EVRRRRRRNQK-----NLPEIEVERSWVHSGEGYEAQLVCIV---HAEP-HAD   68 (70)
Q Consensus        16 ~~~~~~~~~----pvs~~I~L~V~-----ypPeI~v~~~~Vha~~G~~a~L~CiV---~A~P-~a~   68 (70)
                      .|.+.+...    .+++.+.|+|.     ++|.|..+.+.+....|..++|.|.+   .+.| .+.
T Consensus       196 ~C~a~n~~g~~~~~~~~~~~l~V~~~~~~~~P~i~~~~~~~~v~~G~~v~L~C~~~~~~g~P~~~~  261 (339)
T 3o4o_C          196 RCVLTFAHEGQQYNITRSIELRIKKKKEETIPVIISPLKTISASLGSRLTIPCKVFLGTGTPLTTM  261 (339)
T ss_dssp             EEEEECCBTTBCCEEEEEEEEEEECCCCCCCCEECCCSCCCCCCCCSCCCCCCCEEESSSCCSSCE
T ss_pred             EEEEEECCCCeEEEEEEEEEEEEEcCCCCCCCEEecCCceeEeccCCCEEEEEEEECCCCCCCCce
Confidence            366665443    67889999997     47788888777888999999999999   8999 543

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=96.73  E-value=0.0022  Score=41.31  Aligned_cols=48  Identities=6%  Similarity=-0.136  Sum_probs=37.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.++  ..+..+.|.|.++|.+....+ ....+|..++|.|.+.+.|.
T Consensus        70 ~C~a~n~--~~s~~~~l~V~~~p~~~~~~~-~~v~~G~~v~L~C~~~~~~p  117 (204)
T 3sgj_C           70 RCQTQLS--TLSDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTA  117 (204)
T ss_dssp             EEEETTS--BCCCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEEGGGCC
T ss_pred             EEEeCCC--cccccEEEEEecCceEecCCc-eeEeCCCcEEEEEEecCCCC
Confidence            3666653  456789999999998877765 44567999999999977643

>2wng_A Tyrosine-protein phosphatase non-receptor type substrate 1; signal regulatory protein alpha, immunoglobulin superfamily, phosphoprotein; HET: NAG; 2.49A {Homo sapiens}

Probab=96.72  E-value=0.0015  Score=43.68  Aligned_cols=52  Identities=8%  Similarity=-0.019  Sum_probs=36.2

Q ss_pred             hcCcCCCccc-----eeeeEEEEeecCCeE-EEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEE-----VRRRRRRNQKNLPEI-EVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p-----vs~~I~L~V~ypPeI-~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.+.+     .++.+.|.|..+|.. .+..+.+....|..++|.|.+.+.|.+
T Consensus        90 ~C~a~n~~~~~~~~~~~~~~~l~V~~~p~~p~i~~~~~~~~~g~~~~l~C~~~g~p~~  147 (327)
T 2wng_A           90 YCVKFRKGSPDTEFKSGAGTELSVRAKPSAPVVSGPAARATPQHTVSFTCESHGFSPR  147 (327)
T ss_dssp             EEEEEESSTTCEEEEECCCEEEEEEBCCCCCEEECCSSCBCTTCEEEEEEEEEEEBSS
T ss_pred             EEEeecCCCcceeEeecCcEEEEEEecCCCceeeccccccCCCCEEEEEEEEeCccCC
Confidence            4777766543     235678899877643 222333556789999999999999876

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=96.72  E-value=0.0013  Score=41.84  Aligned_cols=51  Identities=10%  Similarity=0.087  Sum_probs=35.1

Q ss_pred             hcCcCCCccc--eeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEE--VRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~p--vs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+....  .++.|.+  .+..+|.|.+..+......|..++|.|.+.+++.
T Consensus        84 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P  138 (207)
T 1l6x_A           84 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYP  138 (207)
T ss_dssp             EEEEECTTSSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             EEEEEcCcCCcceEEEeccCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeCeEC
Confidence            4777766543  3555555  6789999988654433345677999999999643

>2iep_A Muscle-specific kinase receptor; beta-sandwich, signaling protein,transferase; 2.21A {Rattus norvegicus}

Probab=96.69  E-value=0.0005  Score=41.92  Aligned_cols=37  Identities=19%  Similarity=0.210  Sum_probs=32.0

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+..||.|..+...+...+|..++|.|.+.+.|.+.|
T Consensus         3 ~~~~~P~i~~~~~~~~~~~G~~v~l~C~~~~~p~~~i   39 (192)
T 2iep_A            3 KLPKAPVITTPLETVDALVEEVATFMCAVESYPQPEI   39 (192)
T ss_dssp             -CCEEEEESSCCCEEEEETTSCEEEECCEEEESCCEE
T ss_pred             ccCCCceeecCccceeeeCCCcEEEEeeCCCCCCCeE
Confidence            3577899999888888999999999999999998754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=96.69  E-value=0.0013  Score=41.09  Aligned_cols=52  Identities=12%  Similarity=0.087  Sum_probs=36.8

Q ss_pred             hcCcCCCccc-eeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      .|.+.+.... ....+.|.|..   +|.|.+..+......|..++|.|.+.+ .|.+
T Consensus        87 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~~~l~C~~~g~~p~~  143 (213)
T 3d9a_L           87 FCQQSNSWPYTFGGGTKLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPKD  143 (213)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSSC
T ss_pred             EEeeecCCcceeCCCEEEEEecCCCCceeEeECCChhhcCCCcEEEEEEEeeecCCc
Confidence            3777665433 33455777775   999998765555567999999999998 5554

>2v9r_A Roundabout homolog 1; proto-oncogene, differentiation, phosphorylation, disease MU neuronal development, immunoglobulin domain, chemotaxis; 2.00A {Homo sapiens} PDB: 2v9q_A

Probab=96.67  E-value=0.00083  Score=41.41  Aligned_cols=36  Identities=22%  Similarity=0.234  Sum_probs=31.8

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         6 ~~~pp~i~~~p~~~~v~~G~~v~l~C~~~~~p~~~v   41 (212)
T 2v9r_A            6 EDFPPRIVEHPSDLIVSKGEPATLNCKAEGRPTPTI   41 (212)
T ss_dssp             CCEEEEEEECCCCEEECTTCCEEECCEEEEESCCEE
T ss_pred             ccCCcceecCCCceEEeCCCcEEEEEEcCCCCCCEE
Confidence            357999999888888999999999999999998754

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=96.66  E-value=0.0021  Score=45.79  Aligned_cols=52  Identities=10%  Similarity=0.045  Sum_probs=35.6

Q ss_pred             hcCcCCCccceeeeEEEE----eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRN----QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~----V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+.+........|.    +.++|.|.+..+......|.+++|.|.+.+.|.+
T Consensus       400 ~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~  455 (523)
T 2rcj_C          400 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSREEMTKNQVSLTCLVKGFYPS  455 (523)
T ss_pred             EEEEeCCCCCCceeEEEEcccCCCCCCEEEEeCCChHHccCCceEEEEEEEeeECC
Confidence            488876655544333333    7899999886544333445669999999998776

>1dr9_A B7-1 (CD80), T lymphocyte activation antigen; IG superfamily, immune system; HET: NAG; 3.00A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1i8l_A*

Probab=96.65  E-value=0.0026  Score=39.47  Aligned_cols=50  Identities=14%  Similarity=0.044  Sum_probs=35.1

Q ss_pred             hcCcCCCcc-ce----eeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         16 EEEPEKDKE-EV----RRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~-pv----s~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      .|.+.+... ..    .+.+.|.|..+   |.|.+..    ...|..++|.|.+. ++|.|.|
T Consensus        81 ~C~~~~~~g~~~~~~~~~~~~l~V~~~~~~p~~~~~~----~~~g~~~~l~C~~~~g~P~p~i  139 (201)
T 1dr9_A           81 ECVVLKYEKDAFKREHLAEVTLSVKADFPTPSISDFE----IPTSNIRRIICSTSGGFPEPHL  139 (201)
T ss_dssp             EEEEEECCTTSCEEEEEEEEEEEEECCCCCCEEEEEE----CSSTTEEEEEEEEEEESSCEEE
T ss_pred             EEEEEcCCCCccccccccEEEEEEcCCCCCCceEecc----CCCCCeEEEEEecCCccCCCEE
Confidence            366665432 22    46888999887   6766532    25589999999995 9998865

>2lvc_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=96.65  E-value=0.0013  Score=38.75  Aligned_cols=34  Identities=24%  Similarity=0.174  Sum_probs=26.1

Q ss_pred             ecCCeEEEecc--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERS--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.||.|.-+..  .|++.+|+.+.|.|.|.+ |.+.|
T Consensus         2 ~~P~~i~~p~~~~~v~~~~g~~v~l~C~v~~-p~~~v   37 (91)
T 2lvc_A            2 HMPVHIVDPREHVFVHAITSECVMLACEVDR-EDAPV   37 (91)
T ss_dssp             CCCCCCCBCCSCEEEECCTTCCEEEEEECSC-TTSCC
T ss_pred             CCCcEEeccCCCeEEEEECCCcEEEEEEECC-CCcEE
Confidence            35777766643  577889999999999965 87765

>3qs9_E FL cytokine receptor; immunoglobulin-like domain, four-helical bundle cytokine, hematopoietic cytokine-receptor complex, cell surface, EXTR complex; 7.80A {Homo sapiens}

Probab=96.64  E-value=0.0024  Score=47.63  Aligned_cols=52  Identities=8%  Similarity=-0.036  Sum_probs=40.5

Q ss_pred             hcCcCCCccce-eeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         16 EEEPEKDKEEV-RRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pv-s~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      .|.+.|..... ++.+.|+|.++|.+  +.+-+....|..+.|.|.+. +.|.+.|
T Consensus       207 ~C~A~N~~G~~~~~~~~l~V~~~p~~--~p~~~~v~~G~~v~L~C~~~~g~p~p~i  260 (527)
T 3qs9_E          207 RCCARNELGRECTRLFTIDLNQTPQT--TLPQLFLKVGEPLWIRCKAVHVNHGFGL  260 (527)
T ss_dssp             EEEEECSSCEEEEECEEEESSSCCCC--SCCEEEECTTSCEEEEEEEEESSSCCCE
T ss_pred             EEEEEeCCCcccceEEEEEEeccCcc--CCCceEEeCCCeEEEEEEEccCCCCeEE
Confidence            48888665444 44599999999988  44456668899999999996 8998865

>2xzc_L FAB A.17 light chain; immune system; HET: XOP; 1.36A {Homo sapiens} PDB: 2xza_L* 3kdm_L* 3nps_C 1dn0_A 1qlr_A* 2v7n_A 3eo0_A 3eo1_A 2agj_L* 2fx7_L 1tzg_L 2fx8_L 2fx9_L* 1u6a_L 3hi1_L* 3kym_A 3kyk_L 3qwo_L* 3ixt_L* 3qeg_L ...

Probab=96.63  E-value=0.0017  Score=40.94  Aligned_cols=50  Identities=10%  Similarity=-0.032  Sum_probs=34.5

Q ss_pred             hcCcCCCcc--ceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKE--EVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+...  .....+.|.|.   .+|.|.+..+...+..|..++|.|.+.+.+
T Consensus        88 ~C~~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~  142 (216)
T 2xzc_L           88 YCGTWDSSLNPVFGGGTKLEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFY  142 (216)
T ss_dssp             EEEEECTTSCEEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEB
T ss_pred             EEEEEeCCCcceECCCEEEEEcCCCCCCceEEeCCChhhccCCcEEEEEEEEeEc
Confidence            366666543  33455677776   789998854433334689999999999954

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=96.62  E-value=0.0021  Score=41.34  Aligned_cols=40  Identities=20%  Similarity=0.140  Sum_probs=30.1

Q ss_pred             eeEEEEeec----CCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQKN----LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~y----pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      +.+.|.|..    +|.|.+..+......|..++|.|.+.++ |.+
T Consensus       115 ~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p  159 (225)
T 1op3_H          115 PGTVVTVSPASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  159 (225)
T ss_dssp             CCEEEEEESCSCBCCEEEEECCCTTCCCCCEEEEEEEEEEEBSSC
T ss_pred             CCEEEecccCCCcCCeEEEecccccccCCCcEEEEEEEEeEECCC
Confidence            567888875    6888775443334679999999999998 765

>1ry7_B FGFR-3, fibroblast growth factor receptor 3; FGF-FGFR complex, beta trefoil, IG domain, growth factor/growth factor receptor complex; 3.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=96.62  E-value=0.00053  Score=45.57  Aligned_cols=53  Identities=8%  Similarity=0.090  Sum_probs=21.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEE----------------------E----ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIE----------------------V----ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~----------------------v----~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+. ...+..+.|+|.++|.+.                      .    ....+....|..++|.|.+.+.|.+.|
T Consensus        77 ~C~a~n~-~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~p~~~~p~~~~~~~~~v~~g~~v~l~C~~~g~p~~~v  155 (334)
T 1ry7_B           77 SCRQRLT-QRVLCHFSVRVTDAPSSGDDEDGEDEAEDTGVDTGAPYWTRPERMDKKLLAVPAANTVRFRCPAAGNPTPSI  155 (334)
T ss_dssp             -------------------------------------------CCCCSCCTTCCCCEEEEETTCCEEEECCCCCSSCCEE
T ss_pred             EEEEEeC-CeEEEEEEEEEeccCccccccccccccccccccCCCCEEeccccccceeEEecCCCcEEEEEEccCCCCCeE
Confidence            4777777 567888999998876432                      1    223456678999999999999998764

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=96.61  E-value=0.0022  Score=41.70  Aligned_cols=51  Identities=8%  Similarity=-0.016  Sum_probs=37.5

Q ss_pred             cCcCCC----ccceeeeEEEEeecC--------------CeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKD----KEEVRRRRRRNQKNL--------------PEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~----~~pvs~~I~L~V~yp--------------PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+.    .......+.|.|.-+              |.|......+.+.+|..++|.|.+.+.|.+
T Consensus       103 C~~~n~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~  171 (257)
T 3gkz_A          103 CSYFDSDDYAMEYWGQGTSVTVSGGGGSGGGGSGGGGSQIVLTQSPAIMSASPGEKVTLTCSASSSVSS  171 (257)
T ss_dssp             EEEECTTCTTCEEECCCEEEEEC---------CTTCCCCCCEECSCSEEEECTTCCEEEEEEESSCCCG
T ss_pred             EEEecCCCcceeEEcCCEEEeecCchhhcccccCCCccceEEEcCCceEEEeCCCcEEEEEEEccCccc
Confidence            666654    223445677888765              777777777888999999999999998875

>2e7b_A Obscurin; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2yz8_A

Probab=96.58  E-value=0.0012  Score=37.82  Aligned_cols=32  Identities=16%  Similarity=0.135  Sum_probs=28.0

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .||.|..+.+.+.+.+|..++|.|.+.+.|.+
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p~~   38 (103)
T 2e7b_A            7 GPVRFQEALKDLEVLEGGAATLRCVLSSVAAP   38 (103)
T ss_dssp             CCCCCTBCCCCEEEESSSCEEEEEECSSCCCS
T ss_pred             CCCEEEecCccEEEECCCcEEEEEEEeCCCCC
Confidence            47888777777888999999999999999987

>2eo9_A Roundabout homolog 1; beta-sandwich, IG-fold, H-ROBO-1, deleted in U twenty twenty, neurogenesis, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.58  E-value=0.0005  Score=40.45  Aligned_cols=34  Identities=15%  Similarity=0.098  Sum_probs=29.7

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|....+.+....|..++|.|.+.+.|.+.|
T Consensus         7 ~pP~i~~~p~~~~v~~G~~v~l~C~~~g~p~p~i   40 (118)
T 2eo9_A            7 GPPVIRQGPVNQTVAVDGTFVLSCVATGSPVPTI   40 (118)
T ss_dssp             CSCCCSBCCCCEEEETTCEEEEECBCCCSSCCEE
T ss_pred             CCCEEEcCCCCEEEcCCCeEEEEEEEEecCCCEE
Confidence            5788888877788899999999999999998864

>1hng_A CD2; T lymphocyte adhesion glycoprotein; 2.80A {Rattus rattus} SCOP: b.1.1.1 b.1.1.3

Probab=96.56  E-value=0.0019  Score=40.68  Aligned_cols=49  Identities=10%  Similarity=0.036  Sum_probs=33.9

Q ss_pred             hcCcCCCccce--eeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEV--RRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pv--s~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+.....  ++.+.|+|.++|.    ++.+. ..+..++|.|.+.+.|.+.|
T Consensus        77 ~C~~~n~~g~~~~~~~~~l~V~~~~~----~p~i~-~~~~~v~L~C~~~g~p~p~i  127 (176)
T 1hng_A           77 NVTVYSTNGTRILNKALDLRILEMVS----KPMIY-WECSNATLTCEVLEGTDVEL  127 (176)
T ss_dssp             EEEEEETTCCEEEEEEEEEEEECCCC----CCEEE-EETTTTEEEEECSSCSSCEE
T ss_pred             EEEEEeCCCCEEEEEEEEEEEeCCCC----CCEEE-ecCCcEEEEEEecCCCCcEE
Confidence            47777655554  7889999988631    22232 22556999999999998765

>2edf_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=96.55  E-value=0.0022  Score=36.64  Aligned_cols=33  Identities=12%  Similarity=0.045  Sum_probs=28.1

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -||.|..+.+.+....|..++|.|.+.+ |.+.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v   39 (103)
T 2edf_A            7 GPAAIIKPLEDQWVAPGEDVELRCELSR-AGTPV   39 (103)
T ss_dssp             CCCCEEECCCCEEECTTSCEEECCEESS-SSCCC
T ss_pred             CCcEEEecCCccEEcCCCCEEEEEEEeC-CCCcE
Confidence            4788888877788899999999999997 77665

>2yd1_A Tyrosine-protein phosphatase LAR; hydrolase; 1.80A {Drosophila melanogaster} PDB: 3pxj_A

Probab=96.54  E-value=0.0028  Score=39.77  Aligned_cols=34  Identities=21%  Similarity=0.227  Sum_probs=30.6

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         5 ~pP~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v   38 (212)
T 2yd1_A            5 HPPEIIRKPQNQGVRVGGVASFYCAARGDPPPSI   38 (212)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEE
T ss_pred             CCCEEEcCCCceEEecCCEEEEEEEEccCCCCeE
Confidence            5899999988888899999999999999998754

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=96.53  E-value=0.0028  Score=39.67  Aligned_cols=51  Identities=10%  Similarity=-0.001  Sum_probs=35.9

Q ss_pred             cCcCCCcc-ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+... .....+.|.|.    .+|.|.+..+......|..++|.|.+.+.|.+
T Consensus        90 C~~~~~~~~~~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  145 (212)
T 1q0x_L           90 CALWSNNKLVFGGGTKLTVLGQPKSSPTVTLFPPSSEELSTAKATLVCTITDFYPG  145 (212)
T ss_dssp             EEEECSSCEEECCCEEEEECCSCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBSS
T ss_pred             EEEecCchhhcCCCeEEEEecCCCCCCeeEEeCCCHHHccCCcEEEEEEEEEEeCC
Confidence            66665432 23455677773    79999986554445679999999999997654

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=96.52  E-value=0.0017  Score=42.57  Aligned_cols=43  Identities=9%  Similarity=-0.007  Sum_probs=32.8

Q ss_pred             eeeEEEEeecCC---------------eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         27 RRRRRRNQKNLP---------------EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        27 s~~I~L~V~ypP---------------eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+.|.|..+|               .|....+.+...+|..++|.|.+.+.|.+.|
T Consensus       114 ~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~v  171 (257)
T 1f3r_B          114 GPGTMVTVSSGGGGSGGGGSGGGGSDIKLTQSPSLLSASVGDRVTLSCKGSQNINNYL  171 (257)
T ss_dssp             CCCEEEEECSSCCSSCCSSSCCCCCEECSCEETSEECCCTTCCEEEEEECSSCCBTCE
T ss_pred             CCceEEEEEeCCccccccccCCCccceEEEccCCEEEEcCCCCEEEEEEECCcCCCcE
Confidence            356789998864               3444455677889999999999999987654

>1he7_A High affinity nerve growth factor receptor; transferase, TRK-receptor, strand-swapping; 2.0A {Homo sapiens} SCOP: b.1.1.4 PDB: 1wwa_X 1www_X

Probab=96.51  E-value=0.00096  Score=42.97  Aligned_cols=31  Identities=10%  Similarity=0.037  Sum_probs=26.7

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|||.|.++.    ...|+.+.|.|.|.|.|+|.|
T Consensus         2 ~~pP~I~l~~----~~~~~~~~l~c~v~G~P~P~I   32 (126)
T 1he7_A            2 HMPASVQLHT----AVEMHHWCIPFSVDGQPAPSL   32 (126)
T ss_dssp             CCCCCCCCCC----CCCCCEEEEEEEECCSSCCEE
T ss_pred             CCCCEEEccC----CccCccEEEEEEEeeeCCCeE
Confidence            5999997776    347899999999999999976

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=96.48  E-value=0.004  Score=40.48  Aligned_cols=51  Identities=6%  Similarity=-0.074  Sum_probs=38.7

Q ss_pred             cCcCCCccce-eeeEEEEeec---------------CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKEEV-RRRRRRNQKN---------------LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~pv-s~~I~L~V~y---------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+..... .....|.|.-               +|.|....+.+.+.+|..++|.|.+.+.|.+
T Consensus        97 C~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  163 (253)
T 3uzq_A           97 CSRGWEGFAYWGQGTLVTVSAGGGGSGGGGSGGGGSELVMTQTPASLAVSLGQRATISCRASENVDR  163 (253)
T ss_dssp             EEECSSSCCEECCCEEEEECSSSCCCCC---------CCEEEECSEEEECTTSCEEEEEEESSCCEE
T ss_pred             EEEeeCCccEECCCcEEEEecCCccccccccCCCcccceEECcCCeEEEeCCCCEEEEEEecCcccc
Confidence            6666543333 4667788874               6888888878888999999999999998865

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=96.48  E-value=0.003  Score=42.50  Aligned_cols=52  Identities=12%  Similarity=0.172  Sum_probs=33.1

Q ss_pred             hcCcCCCc--cceeeeEEEE--eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDK--EEVRRRRRRN--QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~--~pvs~~I~L~--V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+..  .+....|.+.  +.++|.|.+..+......|..++|.|.+.++|.+
T Consensus       194 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~g~~p~  249 (323)
T 2wqr_A          194 QCRVTHPHLPRALMRSTTKTSGPRAAPEVYAFATPEWPGSRDKRTLACLIQNFMPE  249 (323)
T ss_dssp             EEEEECTTSSSCEEEEECCCCSCCBCCEEEEEECCCCTTCTTEEEEEEEEEEEBSS
T ss_pred             EEEEECCCCCCCeeeEEEccCCCCCCCEEEEeCCChHHhcCCcEEEEEEeeeeeCC
Confidence            37776653  2233333333  5589999886544333349999999999995543

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=96.48  E-value=0.003  Score=40.20  Aligned_cols=42  Identities=12%  Similarity=0.035  Sum_probs=33.1

Q ss_pred             eeEEEEeecCC------------eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         28 RRRRRNQKNLP------------EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        28 ~~I~L~V~ypP------------eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ....|.|..+|            .|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus       106 ~~~~l~V~~~~~~~~p~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i  159 (238)
T 2p1y_A          106 HGTKLSVLGSADDAKKDAAKKDGQVRQSPQSLTVWEGETAILNCSYENSAFDYF  159 (238)
T ss_dssp             CCEEEEEECCCHHHHHHHHHHHTCCEEECSEEEEETTSCEEEEEECCCTTCCEE
T ss_pred             CCeEEEEeccCCCCcCCcccceeeEEccCceEEEeCCCeEEEEEEEecCCCCcE
Confidence            45678887765            6666666778889999999999999987654

>2j8h_A Titin, connectin; cardiomyopathy, nuclear protein, serine/threonine-protein KI LIMB-girdle muscular dystrophy, phosphorylation; 1.99A {Homo sapiens} PDB: 2j8o_A 2ill_A

Probab=96.47  E-value=0.0034  Score=38.46  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=29.7

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|..+.+-+...+|..++|.|.+.+.|.+.|
T Consensus         3 ~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v   36 (197)
T 2j8h_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIV   36 (197)
T ss_dssp             CCCEEEECCCCEEEETTSCEEEEEEEECSSCCEE
T ss_pred             CCCEEEEcCCccEEcCCCEEEEEEEEeecCCCEE
Confidence            4788888877888899999999999999998754

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=96.46  E-value=0.0054  Score=37.73  Aligned_cols=49  Identities=6%  Similarity=-0.176  Sum_probs=36.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+...  +..+.|.|.++|.+..... ....+|..++|.|.+.+.|.+
T Consensus        70 ~C~~~n~~~--s~~~~l~V~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~~~  118 (175)
T 1fnl_A           70 RCQTNLSTL--SDPVQLEVHIGWLLLQAPR-WVFKEEDPIHLRCHSWKNTAL  118 (175)
T ss_dssp             EEECSSSCC--CCCEEEEEECSSEEEECSC-SEEETTCCEEEEEEECTTCCC
T ss_pred             EEEeeCCcc--cccEEEEEeCCCceeeCCC-ceecCCCCEEEEEEcCCCCCc
Confidence            477766433  6778899988877655543 445789999999999988764

>2ens_A Advanced glycosylation END product-specific receptor; beta-sandwich, C2-SET, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.43  E-value=0.0012  Score=37.57  Aligned_cols=33  Identities=24%  Similarity=0.234  Sum_probs=26.9

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|.+..+.+....|..++|.|.+.+.|.+.|
T Consensus        10 ~~~i~~~p~~~~v~~G~~v~l~C~~~g~p~~~v   42 (96)
T 2ens_A           10 EVQLVVEPEGGAVAPGGTVTLTCEVPAQPSPQI   42 (96)
T ss_dssp             SCCCEEESTTSEECTTCEEEEECCCSSCSSCCC
T ss_pred             CCEEEECCCCCEEcCCCeEEEEEEEccCCCCEE
Confidence            466666655566789999999999999998865

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=96.41  E-value=0.0036  Score=40.35  Aligned_cols=47  Identities=9%  Similarity=-0.109  Sum_probs=27.1

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.++|.   ....+.|.+..+|.|....+.+.+.+|..++|.|.+.+.|
T Consensus        20 ~C~a~g~---~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~   66 (254)
T 2c1o_A           20 SCKASGY---SFTNYWMNWLRELVMTQSPLTLSVTIGQPASISCKSSQSL   66 (254)
T ss_dssp             ---------------------CCCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             EEcCchh---hhhhhhhheeeceeEEeCCceEEecCCCcEEEEeeccCcc
Confidence            4777732   3345667777799999888889999999999999999988

>3liz_H 4C3 monoclonal antibody heavy chain; hydrolase-immune system complex; HET: NAG BMA MAN; 1.80A {Mus musculus} PDB: 3rvv_D* 3rvu_D 3rvt_D* 3rvw_D* 3rvx_D 1lo4_H 1ub6_H 3r06_B 3r08_H

Probab=96.41  E-value=0.0054  Score=40.33  Aligned_cols=51  Identities=10%  Similarity=0.015  Sum_probs=32.9

Q ss_pred             cCcCCCc----cceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         17 EEPEKDK----EEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        17 ~~~~~~~----~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      |...+.+    ....+.+.|.|.    .+|.|.+..+......|..++|.|.+.+ +|.+
T Consensus        96 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~~  155 (253)
T 3liz_H           96 CTRDPAGRAWFAYWGQGTLVTVSAAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  155 (253)
T ss_dssp             EEECCBTTTBCCEECCCEEEEECSSCCBCCEEEEECC------CCEEEEEEEEEEEBSSC
T ss_pred             EEEecCCcceeeEECCCEEEEEeccCCCCCeEEEecCCcccCCCCcEEEEEEEeeEeCCC
Confidence            5555542    223455678886    8999987666555567999999999999 6655

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=96.40  E-value=0.0053  Score=38.30  Aligned_cols=49  Identities=10%  Similarity=-0.018  Sum_probs=35.8

Q ss_pred             hcCcCCCcc--ceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKE--EVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+...  ..+..+.|.|.+   +|.|....+. ....|..++|.|.+.+.|
T Consensus        74 ~C~a~n~~g~~~~s~~~~l~V~~~~~~p~~~~~~~~-~v~~G~~v~L~C~~~~~~  127 (196)
T 3p2t_A           74 RCYYRSPVGWSQPSDPLELVMTGAYSKPTLSALPSP-LVTSGKSVTLLCQSRSPM  127 (196)
T ss_dssp             EEEEEETTEEBCCCCCEEEEEECSSCCCEEEEESCS-EECTTCCEEEEEEEEEEE
T ss_pred             EEEEeCCCcccCCCccEEEEecCCCCCCEEEeCCcc-eecCCCeEEEEEecCCCC
Confidence            366666543  457778888864   6788877654 447899999999998855

>2edk_A Myosin-binding protein C, fast-type; IG fold, fast MYBP-C, C-protein, skeletal muscle fast- isoform, MYBPCF, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=96.40  E-value=0.0017  Score=37.31  Aligned_cols=33  Identities=15%  Similarity=-0.074  Sum_probs=28.3

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|..+.+-+.+.+|+.++|.|.+.+.| +.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~-~~v   39 (101)
T 2edk_A            7 GPVLIVTPLEDQQVFVGDRVEMAVEVSEEG-AQV   39 (101)
T ss_dssp             CCCCEEECCCCEEEESSCCCBCCEEESCSS-CCC
T ss_pred             CCCEEEecCCceEEcCCCCEEEEEEEeCCC-CEE
Confidence            578888877778889999999999999998 654

>1za6_B IGG heavy chain; immunoglobulin fold, CH2-domain-deletion, immune system; 2.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2

Probab=96.40  E-value=0.0026  Score=43.27  Aligned_cols=34  Identities=15%  Similarity=0.121  Sum_probs=25.5

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +.++|.|.+..+...+..|..++|.|.+.++|.+
T Consensus       239 ~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P~  272 (344)
T 1za6_B          239 QPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS  272 (344)
T ss_dssp             CCBCCEEEEECCCGGGGGSSSEEEEEEEEEEBSS
T ss_pred             CCcCCEEEEeCCChHhccCCcEEEEEEEeeEECC
Confidence            4689999887654444557789999999996443

>1iam_A ICAM-1, CD54, intercellular adhesion molecule-1; rhinovirus receptor, cell adhesion, integrin ligand, glycopr LFA-1 ligand, immunoglobulin fold; HET: NAG; 2.10A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ic1_A* 1d3l_A 1d3e_I 1d3i_I 3tcx_A

Probab=96.38  E-value=0.0048  Score=41.70  Aligned_cols=52  Identities=15%  Similarity=0.017  Sum_probs=38.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEE-ecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEV-ERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v-~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      -|-....+....+.+.|.|.++|..-. ..+--...+|++.+|.|.|++ .|.+
T Consensus        64 ~C~~~c~~~~~~~~~~l~V~~~P~~v~i~~~~~~~~~G~~~tL~C~v~g~~P~~  117 (185)
T 1iam_A           64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRA  117 (185)
T ss_dssp             EEEEECSSCEEEEECEEEEEBCCSEEEECCCCSEECTTSEEEEEEEEECCBCGG
T ss_pred             EEEEECCCCceEEEEEEEEeCCCCCCEEccCCccccCCCcEEEEEEcCCccCCC
Confidence            366667778899999999999886522 222112578999999999999 5554

>2a38_A Titin; Z1Z2, structural protein; 2.00A {Homo sapiens} PDB: 1ya5_A 2f8v_A

Probab=96.38  E-value=0.003  Score=38.49  Aligned_cols=35  Identities=17%  Similarity=0.116  Sum_probs=30.1

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .-||.|..+.+.+...+|..++|.|.+.+.|.+.|
T Consensus         3 ~~~P~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v   37 (194)
T 2a38_A            3 TQAPTFTQPLQSVVVLEGSTATFEAHISGFPVPEV   37 (194)
T ss_dssp             CEEEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCCCeEEccCCceEEECCCEEEEEEEEEecCCCEE
Confidence            34788888877888899999999999999998754

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=96.36  E-value=0.0039  Score=39.07  Aligned_cols=51  Identities=10%  Similarity=0.012  Sum_probs=35.5

Q ss_pred             hcCcCCCccc-eeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+.... ....+.|.|..   +|.|.+..+......|..++|.|.+.+.+.
T Consensus        86 ~C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p  140 (210)
T 1lk3_L           86 FCQQSWNGPLTFGAGTKLELKRADAAPTVSIFPPSTEQLATGGASVVCLMNNFYP  140 (210)
T ss_dssp             EEEECSSSSCEECCCEEEEECCCCBCCEEEEECCCHHHHTTTEEEEEEEEEEEBS
T ss_pred             EEEEEcCCCceeCCCEEEEEcCCCcCCeEEEECCchhhccCCcEEEEEEEEeEeC
Confidence            3777665432 23455777775   899998655444557999999999998543

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=96.35  E-value=0.0032  Score=41.94  Aligned_cols=52  Identities=6%  Similarity=0.041  Sum_probs=35.9

Q ss_pred             hcCcCCCccc--eeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEE--VRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p--vs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+.+....  ..+.|.+  .+..+|.|.+..+......|..++|.|.+.+++.+
T Consensus        98 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P~  153 (239)
T 1i1c_A           98 KCKVNSGAFPAPIEKSISKPEGTPRGPQVYTMAPPKEEMTQSQVSITCMVKGFYPP  153 (239)
T ss_dssp             EEEEECSSSSSCEEEEECCCSSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS
T ss_pred             EEEEecccCCCCcEEEEecCCCCCcCCEEEEECCChHHhcCCcEEEEEEEeeeECC
Confidence            3666665443  4556655  78899999887554333458899999999995443

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=96.35  E-value=0.0019  Score=45.23  Aligned_cols=51  Identities=6%  Similarity=0.038  Sum_probs=37.3

Q ss_pred             hcCcCCCccc--eeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEE--VRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~p--vs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+....  ..+.|.+  .+.++|.|.+..+......|..++|.|.+.++|.
T Consensus       311 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~L~C~~~g~~P  365 (434)
T 1igy_B          311 KCRVNSAAFPAPIEKTISKTKGKPRAPQVYTIPPPKEQMAKDKVSLTCMITDFFP  365 (434)
T ss_dssp             BCCBCCSSCSSCCCCCCCCCCSCCBCCCCEEECCCSSSSSSSEEEEEEEEEEEBC
T ss_pred             EEEEECCCCCCceeEEEeccCCCCcCCEEEEECCCHHHhcCCcEEEEEEEEeeEC
Confidence            4787776553  4566655  7889999988765444456888999999999643

>3caf_A Fibroblast growth factor receptor 2; FGFR2, D2, ATP-binding, disease MU ectodermal dysplasia, glycoprotein, heparin-binding, immuno domain, kinase; 1.96A {Homo sapiens} PDB: 3cu1_A* 3euu_A 3dar_A 1wvz_A

Probab=96.34  E-value=0.0011  Score=37.45  Aligned_cols=26  Identities=8%  Similarity=0.133  Sum_probs=22.5

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+...+|..++|.|.+.+.|.+.|
T Consensus        15 ~~~~~v~~G~~v~l~C~~~g~p~p~v   40 (100)
T 3caf_A           15 KRLHAVPAANTVKFRCPAGGNPMPTM   40 (100)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCCEE
T ss_pred             ccEEEecCCCEEEEEEEccccCCCEE
Confidence            35677889999999999999998864

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=96.33  E-value=0.0073  Score=38.42  Aligned_cols=51  Identities=10%  Similarity=0.010  Sum_probs=34.7

Q ss_pred             hcCcCCCcc-ceeeeEEEEeecCC-----eE-EEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQKNLP-----EI-EVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~ypP-----eI-~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+... .......|.|..+|     .+ ....+.+.+..|..++|.|.+.+.|.
T Consensus        91 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~g~p~  148 (240)
T 1moe_A           91 YCQQTNEDPYTFGGGTKLEIKGGGSGGGGEVQLQQSGAELVEPGASVKLSCTASGFNI  148 (240)
T ss_dssp             EEEECSSSSCCBCCCEEEEECCCSCCCCCCCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred             EEEEccCCceeecCCEEEEEecCCCCCCceEEEeCCCceEEeCCCcEEEEEEEcCccC
Confidence            466666533 24566788888753     22 22334456788999999999999884

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=96.31  E-value=0.0035  Score=40.75  Aligned_cols=53  Identities=9%  Similarity=0.060  Sum_probs=39.7

Q ss_pred             hcCcCCCccceeeeEEEEeec------------CCeEEEecc-eEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKN------------LPEIEVERS-WVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~y------------pPeI~v~~~-~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      .|.+.+... ......|.|.+            +|.+....+ .+....|..++|.|.+. +.|.+.|
T Consensus        74 ~C~~~n~~g-~~~s~~l~v~~~~~~~~~~~~~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v  140 (312)
T 2y23_A           74 SCDVTDTDG-IASSYLIDEEELKRLLALSHEHKFPTVPVKSELAVEILEKGQVRFWMQAEKLSGNAKV  140 (312)
T ss_dssp             EEEESSSCC-CCEEEEECHHHHHHHHHHHHHHHSCBCCEEEEEEEEECSSSCEEEEEEESCCCSSCEE
T ss_pred             EEEEEeCCC-cEEEEEEEEeeeeeeecccccCCCCccccccCCceEEeeCCCEEEEEEEEeCCCCCEE
Confidence            466766544 23367788875            888777654 77788999999999999 8898764

>1igy_B IGG1 intact antibody MAB61.1.3; intact immunoglobulin, V region, C region, hinge region, immunoglobulin; HET: NAG FUL NDG BMA MAN GAL FUC; 3.20A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=96.29  E-value=0.0053  Score=42.95  Aligned_cols=52  Identities=12%  Similarity=0.021  Sum_probs=37.8

Q ss_pred             hcCcCCCccceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .|.+.+........+.|.|.    .+|.|....+......|..++|.|.+.+. |.+
T Consensus        94 ~C~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~G~~v~L~C~~~g~~P~p  150 (434)
T 1igy_B           94 YCVREGEVPYWGQGTTVTVSSAKTTPPSVYPLAPGSAAQTNSMVTLGCLVKGYFPEP  150 (434)
T ss_dssp             CCCCSSSSCCCCCCEECEECCSCCBCCCEEEECCCCCCCCTTEEEEEEEEEEEBSSC
T ss_pred             EEEEEccccccCCceEEEEccCCCCCCeEEEcCCccccCCCCcEEEEEEEeeecCCC
Confidence            47777754445566788886    47888865544445789999999999997 765

>2vr9_A Roundabout 1, ROBO; immunoglobulin-like domain, AXON guidance, cell adhesion, immunoglobulin domain; 3.2A {Drosophila melanogaster} PDB: 2vra_A*

Probab=96.28  E-value=0.0028  Score=39.55  Aligned_cols=35  Identities=20%  Similarity=0.198  Sum_probs=31.0

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         7 ~~~P~i~~~p~~~~v~~G~~v~L~C~~~g~p~~~v   41 (217)
T 2vr9_A            7 YQSPRIIEHPTDLVVKKNEPATLNCKVEGKPEPTI   41 (217)
T ss_dssp             CCCCEEEECCCCEEECTTSCEEECCEEECSSCCEE
T ss_pred             cCCCEEecCCCceEEeCCCcEEEEEEcCCCCCCeE
Confidence            56889999888888999999999999999998754

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=96.28  E-value=0.0055  Score=39.66  Aligned_cols=51  Identities=12%  Similarity=0.037  Sum_probs=30.7

Q ss_pred             cCcCCCcc-ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |.+.+... .....+.|.|.    .+|.|.+..+......|..++|.|.+.++ |.+
T Consensus        96 C~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~P~p  152 (227)
T 1mju_H           96 CANKLGWFPYWGQGTLVTVSAAKTTAPSVYPLAPVCGDTSGSSVTLGCLVKGYFPEP  152 (227)
T ss_dssp             EEEEETTEEEECCCEEEEECSSCCBCCEEEEECCCC------CEEEEEEEEEEBSSC
T ss_pred             EEECCCCceEEcCcEEEEEcCCCCCCCEEEEecCCccccCCCcEEEEEEeecEeCCC
Confidence            55544321 22355688887    47888876554445679999999999997 765

>2rcj_C Light chain; immunoglobulin M, polymeric antibodies, immunology, X-RAY solution scattering, constrained modelling, immune system; NMR {Homo sapiens}

Probab=96.28  E-value=0.0026  Score=45.30  Aligned_cols=52  Identities=17%  Similarity=0.182  Sum_probs=39.9

Q ss_pred             hcCcCCCccceeeeEEE----EeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDKEEVRRRRRR----NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L----~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .|.+.+.+..+...+.+    .+.++|.|....+......|..++|.|.+.+. |.+
T Consensus       194 ~C~a~n~~~~~~~~~~~~~~~~~~~~P~v~~~~~~~~~~~G~~~~l~C~~~g~~P~p  250 (523)
T 2rcj_C          194 SCQVTHEGSTVEKTVAPTECSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPQP  250 (523)
T ss_pred             EEEEEecCcccccceeeeecCCCCcCCEEEecCCCcccccCCceEEEEEEeceeCCC
Confidence            47777777766666665    45789999866555566789999999999987 766

>3m45_A Cell adhesion molecule 2; IG fold, dimer, disulfide bond, glycoprotein, immunoglobulin membrane, transmembrane; HET: NAG; 2.21A {Mus musculus}

Probab=96.27  E-value=0.0034  Score=35.41  Aligned_cols=35  Identities=23%  Similarity=0.086  Sum_probs=25.3

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .-+|.+....+-+.+.+|..++|.|.+.+.|.+.|
T Consensus         4 ~~~p~~~~~~~~~~v~~G~~v~L~C~~~~~~~~~v   38 (108)
T 3m45_A            4 KGSQGQFPLTQNVTVVEGGTAILTCRVDQNDNTSL   38 (108)
T ss_dssp             ----CCCEECCCEEEETTSCEEEEEEESSCSSCCE
T ss_pred             ccCCCccccCCeeEEEeCCcEEEEeEEcCCCccEE
Confidence            34566666666677789999999999999997754

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=96.26  E-value=0.0058  Score=39.24  Aligned_cols=51  Identities=8%  Similarity=0.018  Sum_probs=35.0

Q ss_pred             hcCcCCCcc--ceeeeEE-EEeecCCeEEEecceE-EeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE--EVRRRRR-RNQKNLPEIEVERSWV-HSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~-L~V~ypPeI~v~~~~V-ha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+...  +..+.|. +.+.++|.|.+..+.. ....|..++|.|.+.+++.
T Consensus        82 ~C~~~~~~~~~~~~~~i~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P  136 (214)
T 1ow0_A           82 TCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSP  136 (214)
T ss_dssp             EEEECCSSCSSCEEEEEECCSSCCCCEEEEECCCTTTTTSSSEEEEEEEEEEESS
T ss_pred             EEEEecCCCCCceeEeeccCCCCCCCEEEecCCCHHHhccCCceEEEEEEeeeEC
Confidence            466666543  3445554 3678999998765432 2457999999999999643

>1bih_A Hemolin; insect immunity, LPS-binding, homophilic adhesion; 3.10A {Hyalophora cecropia} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4

Probab=96.25  E-value=0.0016  Score=43.97  Aligned_cols=38  Identities=16%  Similarity=0.179  Sum_probs=30.8

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      |.|..||.|....+.+...+|..++|.|.+.+ .|.+.|
T Consensus         1 l~v~~~P~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v   39 (395)
T 1bih_A            1 LPVDKYPVLKDQPAEVLFRENNPTVLECIIEGNDQGVKY   39 (395)
T ss_dssp             ----CCCEECCCCSEEEEETTSCEEECCCEESCCSSCEE
T ss_pred             CCcCCCCEeecCCCceEEeCCCEEEEEEEEecCCCCceE
Confidence            56889999999988899999999999999999 787654

>2kkq_A Myotilin; unknown function, actin-binding, cell membrane, cytoplasm, cytoskeleton, disease mutation, immunoglobulin domain; NMR {Homo sapiens}

Probab=96.25  E-value=0.0017  Score=38.67  Aligned_cols=36  Identities=22%  Similarity=0.238  Sum_probs=30.5

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ...+|.|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus        12 ~~~~p~f~~~p~~~~v~~G~~v~L~C~~~g~p~p~v   47 (116)
T 2kkq_A           12 HKRAPMFIYKPQSKKVLEGDSVKLECQISAIPPPKL   47 (116)
T ss_dssp             CCBCCCBSSCCCCEEEETTEEEEEEEEBCCBSCCEE
T ss_pred             CCCCCeEEeCCCcEEEeCCCcEEEEEEEeccCCCEE
Confidence            445788887777788899999999999999998865

>4i0k_A CD276 antigen; immunoglobulin domain, glycoprotein, immunity, adaptive IMMU structural genomics, protein structure initiative; HET: NAG BMA MAN; 2.97A {Mus musculus}

Probab=96.24  E-value=0.0018  Score=40.56  Aligned_cols=51  Identities=12%  Similarity=0.057  Sum_probs=34.8

Q ss_pred             cCcCCCccceeeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      |...+.+ ..++.+.|.|..+   |.|....+. ....|..++|.|.+ .+.|.+.|
T Consensus        89 C~~~~~~-~~~~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~~~l~C~~~~g~P~~~v  143 (222)
T 4i0k_A           89 CFVSIQD-FDSAAVSLQVAAPYSKPSMTLEPNK-DLRPGNMVTITCSSYQGYPEAEV  143 (222)
T ss_dssp             EEEEECC-CCCCCCCCCCCBCCCCCEEECCC------CCSEEEEEEEEEEEBSCCEE
T ss_pred             EEEEeCC-CceEEEEEEEEcCCCCCcEEeCCCc-eecCCceEEEEEecccccCCCeE
Confidence            5555432 3467778888876   888876543 34679999999999 89998765

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=96.24  E-value=0.004  Score=43.84  Aligned_cols=52  Identities=10%  Similarity=0.092  Sum_probs=35.0

Q ss_pred             hcCcCCCcc--ceeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKE--EVRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+.+.+.  ++++.|.+  .+.++|.|.+..+......|.+++|.|.+.++|.+
T Consensus       330 ~C~a~n~~~~~~~~~~v~~~~~~~~~P~v~~~~~~~~~~~~~~~~l~C~~~g~~p~  385 (457)
T 1hzh_H          330 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPS  385 (457)
T ss_dssp             EEEEECTTSSSCEEEEECCCCCCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSS
T ss_pred             EEEEeCCCCCCcceEEEEcccCCCCCCeEEEECCCccccCCCcEEEEEEEEeEECC
Confidence            477775433  34555655  67899999887544333345559999999998654

>1qok_A MFE-23 recombinant antibody fragment; immunoglobulin, single-chain FV, anti-carcinoembryonic antigen; 2.4A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=96.24  E-value=0.01  Score=39.65  Aligned_cols=52  Identities=4%  Similarity=-0.033  Sum_probs=36.0

Q ss_pred             cCcCCCcc-----ceeeeEEEEeecCC---------------eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         17 EEPEKDKE-----EVRRRRRRNQKNLP---------------EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        17 ~~~~~~~~-----pvs~~I~L~V~ypP---------------eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+.+...     .....+.|.|..+|               .|....+.+.+.+|..++|.|.+.+.| +.|
T Consensus       122 C~~~n~~g~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~-~~v  193 (282)
T 1qok_A          122 CNEGTPTGPYYFDYWGQGTTVTVSSGGGGSGGGGSGGGGSENVLTQSPAIMSASPGEKVTITCSASSSV-SYM  193 (282)
T ss_dssp             EEEECSSSSCCCEEECCCEEEEEEC---------------CCCEEEECSEEEECTTCCEEEEEEESSCC-SCC
T ss_pred             EEeccCCCccceeeeCCCEEEEEecCCcccCCccCCCCccceEEecCCCEEEEcCCCcEEEEEEecCCC-ceE
Confidence            66655432     22355688888754               466666677889999999999999988 544

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=96.23  E-value=0.001  Score=41.74  Aligned_cols=40  Identities=23%  Similarity=0.248  Sum_probs=30.0

Q ss_pred             eeeEEEEe----ecCCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         27 RRRRRRNQ----KNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        27 s~~I~L~V----~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      .....|.|    ..+|.|.+..+......|..++|.|.+.+. |.
T Consensus        99 ~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  143 (212)
T 1nfd_E           99 GSGTQLTVLRGPKSSPKVTVFPPSPEELRTNKATLVCLVNDFYPG  143 (212)
T ss_dssp             CCCEEEEEECCCCBCCEEECCCCCHHHHHTTEECCCEEEEEEBSS
T ss_pred             CCceEEEEccCCCCCCEEEeeCCchHhccCCceEEEEEEEeeECC
Confidence            34566777    478999886554445679999999999998 44

>2c1o_A IGK-C protein; FAB fragment, enantioselective, finrozole, immune system, antibody, ENA11His antibody, immunoglobulin domain; 2.75A {Mus musculus}

Probab=96.21  E-value=0.0053  Score=39.53  Aligned_cols=51  Identities=10%  Similarity=0.006  Sum_probs=34.7

Q ss_pred             cCcCCCccc-eeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKEE-VRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~p-vs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+.... ......|.|.   ++|.|.+..+......|..++|.|.+.+.|.+
T Consensus       130 C~a~n~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~g~~p~  184 (254)
T 2c1o_A          130 CVQGSHFPPTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  184 (254)
T ss_dssp             EEECSSSSCEEBCCEEEEECCCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             EEEEcCcceEecCCEEEEECCCCCCCeeEeecCChhhccCCcEEEEEEEecccCC
Confidence            777665432 2334466665   48999986555444568899999999996544

>3cx2_A Myosin-binding protein C, cardiac-type; protonation states, actin-binding, cardiomyopathy, cell adhesion, disease mutation, immunoglobulin domain; 1.30A {Homo sapiens} PDB: 2v6h_A 2avg_A

Probab=96.21  E-value=0.0026  Score=37.11  Aligned_cols=29  Identities=7%  Similarity=-0.151  Sum_probs=22.3

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |.+....+.+.+.+|..++|.|.+.+.|.
T Consensus         5 p~f~~~p~~~~v~~G~~v~L~C~~~g~p~   33 (108)
T 3cx2_A            5 GLFVMRPQDGEVTVGGSITFSARVAGASL   33 (108)
T ss_dssp             CSCSBCCCCEEEETTCCEEEEEEEECC-C
T ss_pred             cEEEeCCCcEEEeCCCCEEEEEEECCCcc
Confidence            44444555677789999999999999997

>2zg1_A Sialic acid-binding IG-like lectin 5; siglec-5 inhibitory receptor, two-domain structure, V-SET, C2-SET, IG-like domain, 6'-sialyllactose complex; HET: SIA; 2.70A {Homo sapiens} PDB: 2zg3_A* 2zg2_A

Probab=96.20  E-value=0.0033  Score=39.08  Aligned_cols=39  Identities=15%  Similarity=0.242  Sum_probs=28.8

Q ss_pred             eeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeee----CCCCC
Q psy15736         28 RRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAE----PHADP   69 (70)
Q Consensus        28 ~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~----P~a~V   69 (70)
                      +.+.|+|..   +|.|.++..   ...|..++|.|.+.+.    |.+.|
T Consensus       114 ~~~~l~V~~~~~~p~i~~~~~---~~~G~~v~L~C~~~~~~~~~p~p~v  159 (214)
T 2zg1_A          114 NKLNLEVTALIEKPDIHFLEP---LESGRPTRLSCSLPGSCEAGPPLTF  159 (214)
T ss_dssp             SCEEEEEECCCCCCEEC--CC---CCTTCCEEEEEECTTCCSCSSCCEE
T ss_pred             CceEEEEecCCCCCceecCcc---ccCCCeEEEEEEeccCCCCCCCceE
Confidence            578888887   678887654   3579999999999874    76654

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=96.20  E-value=0.009  Score=38.40  Aligned_cols=49  Identities=6%  Similarity=-0.066  Sum_probs=31.6

Q ss_pred             hcCcCCCccc-eeeeEEEEeecCC--------------eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKNLP--------------EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~ypP--------------eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+.... ....+.|.|..+|              .|..+.+. .+.+|..++|.|.+.+.|
T Consensus        92 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~-~v~~G~~v~L~C~~~~~~  155 (247)
T 1svz_A           92 YCFQGSHFPPTFGGGTKLEIKGGGGSGGGGSGGGGSEVQLQQSGPE-LKKPGETVKISCKATNYA  155 (247)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEECCCE-EECTTCCEEEEEEEESSC
T ss_pred             EEEEccCCccEECCCEEEEEECCccccccccccccCceEEeCCCce-eecCCCcEEEEEEEcCcc
Confidence            3666665332 3456788888763              34433443 478999999999999885

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=96.11  E-value=0.006  Score=36.71  Aligned_cols=49  Identities=10%  Similarity=-0.029  Sum_probs=35.4

Q ss_pred             cCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEee-eCCCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHAD   68 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~   68 (70)
                      |.+.+.  ..+..+.|.|.++|.+...... ...+|..++|.|.+.+ .|.+.
T Consensus        68 C~~~~~--~~s~~~~l~v~~~~~~~~~~~~-~~~~g~~~~l~C~~~~~~p~~~  117 (170)
T 3ry4_A           68 CQTGQT--SLSDPVHLTVLFEWLVLQTPHL-EFQEGETIMLRCHSWKDKPLVK  117 (170)
T ss_dssp             EEETTS--BCCCCEEEEEECCSEEEECSCS-EECTTCCEEEEEEEGGGCCEEE
T ss_pred             EEEeCC--CceEeEEEEEECCceEecCCCc-eeecCCeEEEEEECCCCCCCce
Confidence            666543  3466799999999977766544 4578999999999954 45443

>3oq3_B IFN-alpha/beta binding protein C12R; mousepox virus, moscow strain, cytokine decoy RE virus/viral protein, type-1 interferon, soluble A/B-IFNR; HET: EPE; 2.10A {Ectromelia virus}

Probab=96.11  E-value=0.0021  Score=43.38  Aligned_cols=54  Identities=13%  Similarity=0.075  Sum_probs=39.0

Q ss_pred             hcCcCCCc-cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeC-CCCC
Q psy15736         16 EEEPEKDK-EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP-HADP   69 (70)
Q Consensus        16 ~~~~~~~~-~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P-~a~V   69 (70)
                      .|.+.+.. ......+.+.+..||.+..+...+.+.+|..+.|.|.+.+.| .+.|
T Consensus       106 ~C~a~n~~g~~~~~~~~~v~~~~p~~~~~~~~~~~~~G~~v~L~C~~~g~p~~~~i  161 (329)
T 3oq3_B          106 LCTVTTKNGDCVQGIVRSHIRKPPSCIPETYELGTHDKYGIDLYCGILYAKHYNNI  161 (329)
T ss_dssp             EEEEECTTSCEEEEEEEEEECCCCSCEEEEEETTSSTTTCEEEECCCCSCCCCCEE
T ss_pred             EEEEEeCCCceeeEEEEEEEcCCCcEeccccceEEeCCCcEEEEeccCCCCCCceE
Confidence            36666655 333333446666788887777777778899999999999999 7654

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=96.07  E-value=0.0036  Score=39.38  Aligned_cols=51  Identities=8%  Similarity=-0.003  Sum_probs=35.5

Q ss_pred             hcCcCCCcc-ceeeeEEEEe---ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQ---KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V---~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+... .....+.|.|   ..+|.|.+..+-.....|..++|.|.+.+.|.
T Consensus       110 ~C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~l~C~~~~~~p  164 (237)
T 3sob_L          110 YCQQSYTTPPTFGQGTKVEIKRTVAAPSVFIFPPSDEQLKSGTASVVCLLNNFYP  164 (237)
T ss_dssp             EEEECSSSSCEECCCEEEEEECCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBS
T ss_pred             EEeeccCCceEEcCcEEEEEecCCCCCceEEeCCChhhccCCceEEEEEEcccCC
Confidence            366655442 2345566776   78999988766555556899999999999553

>3p3y_A Neurofascin; IG domains, cell adhesion; HET: NAG; 2.60A {Homo sapiens} PDB: 3p40_A*

Probab=96.07  E-value=0.0024  Score=43.04  Aligned_cols=54  Identities=19%  Similarity=0.091  Sum_probs=40.6

Q ss_pred             hcCcCCC-ccceeeeEEEEeecCCeEEEec-ceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNLPEIEVER-SWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~ypPeI~v~~-~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+. |...+..+.|.|.++|.+.... .-+...+|+.++|.|.+ .+.|.+.+
T Consensus        93 ~C~a~n~~g~~~s~~~~l~V~~~p~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v  149 (404)
T 3p3y_A           93 QCFARNKFGTALSNRIRLQVSKSPLWPKENLDPVVVQEGAPLTLQCNPPPGLPSPVI  149 (404)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCCCCCCCCCCCEEEETTSCEEECCCCCCCSSCCEE
T ss_pred             EEEEEcCCCeEeeeeEEEEEeccCccccCCCCCeEEccCCcEEEEeCCCCCCCCCeE
Confidence            4777665 4444688999999999765432 33666889999999999 88887754

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=96.06  E-value=0.0026  Score=40.37  Aligned_cols=51  Identities=10%  Similarity=0.015  Sum_probs=31.9

Q ss_pred             cCcCCCcc-ceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+... .....+.|.|..   +|.|.+..+......|..++|.|.+.+.|++
T Consensus       110 C~~~~~~~~~~~~~~~l~V~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  164 (233)
T 3bqu_C          110 CLQSDNLPYTFGGGTNLEIKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  164 (233)
T ss_dssp             EEECSSSSCCBCCCCBC---CCCBCCEEEEECCCHHHHHTTEEEEEEEEEEEBSS
T ss_pred             EEEecCCceeecCCEEEEEeCCCCCCEEEEeCCCHHhhcCCceEEEEEEccccCC
Confidence            66655432 223345566664   8999886554444579999999999996543

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=96.04  E-value=0.0076  Score=38.96  Aligned_cols=48  Identities=6%  Similarity=-0.035  Sum_probs=31.6

Q ss_pred             cCcCCCc---cceeeeEEEEeecCC---------------------eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         17 EEPEKDK---EEVRRRRRRNQKNLP---------------------EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        17 ~~~~~~~---~pvs~~I~L~V~ypP---------------------eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |.+.+..   ......+.|.|..+|                     .|..+.+.. ..+|..++|.|.+.+.|
T Consensus        91 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-v~~G~~v~L~C~~~~~~  162 (256)
T 3ux9_B           91 CQVRDNNENEWVFGGGTKLTVLGSGGSTITSYNVYYTKLSSSGSEVQLVESGGGL-VQPGGSLRLSCAASGFT  162 (256)
T ss_dssp             EEEEETTTTEEEECCCEEEEEC----------------------CCEEEEECCEE-ECTTCCEEEEEEEESSC
T ss_pred             EEEEECCCCceEECCCEEEEEECCCCCcCccceeEEeecCCCccceeEEcCCCeE-EcCCCeEEEEEEEeCCc
Confidence            5555432   234466789998876                     565555444 78999999999999876

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=96.04  E-value=0.012  Score=38.19  Aligned_cols=49  Identities=6%  Similarity=-0.018  Sum_probs=31.3

Q ss_pred             hcCcCCCccc-eeeeEEEEeecCCe--------------EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKNLPE--------------IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~ypPe--------------I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+.... ....+.|.|..+|.              |..+.+ +.+.+|..++|.|.+.+.|
T Consensus        87 ~C~~~n~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~-~~v~~G~~v~L~C~~~g~~  150 (242)
T 2znx_A           87 FCQQSNSXPYTFGGGTKLEITGGGGSGGGGSGGGGSDIQLQESGP-SLVKPSQTLSLTCSVTGDS  150 (242)
T ss_dssp             EEEECSSSSCEECCCEEEEEC---------------CCEEEEECC-SEECTTSCEEEEEEEESSC
T ss_pred             EEeEecCCceEECCCEEEEEcCCCCCCcccccccccceeeecCCc-ceecCCCeEEEEEEEEccc
Confidence            3666665432 34567899998773              333333 3478999999999999876

>2ckn_A Basic fibroblast growth factor receptor 1; kinase, transferase, heparin-binding, nucleotide-binding, immunoglobulin domain, alternatice splicing; NMR {Mus musculus}

Probab=96.03  E-value=0.0016  Score=37.05  Aligned_cols=31  Identities=19%  Similarity=0.113  Sum_probs=26.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ||.|....+.+....|..++|.|.+.+.| +.
T Consensus         9 pp~~~~~~~~~~v~~G~~v~l~C~~~g~p-p~   39 (95)
T 2ckn_A            9 PWGVPVEVESLLVHPGDLLQLRCRLRDDV-QS   39 (95)
T ss_dssp             SCCBTTBBCCEEECTTSCEEEECCEESSC-CE
T ss_pred             CCEEEcCcceEEEcCCCeEEEEEECCCCC-Cc
Confidence            57777777778889999999999999998 54

>2nzi_A Titin; IG-domain, FNIII-domain, transferase; 2.90A {Homo sapiens}

Probab=96.02  E-value=0.0075  Score=39.31  Aligned_cols=34  Identities=24%  Similarity=0.246  Sum_probs=30.2

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|....+.+...+|..++|.|.+.+.|.+.|
T Consensus         3 ~~P~~~~~p~~~~v~~G~~v~l~C~~~g~p~~~v   36 (305)
T 2nzi_A            3 MAPHFKEELRNLNVRYQSNATLVCKVTGHPKPIV   36 (305)
T ss_dssp             CCCEEEECCCCEEECTTCCEEEEEEEECSSCCEE
T ss_pred             CCCeeeecccceEEeCCCcEEEEEEEeCCCCCeE
Confidence            4899988878888899999999999999998764

>2xqy_G A13-D6.3 monoclonal antibody, envelope glycoprotein H; immune system-viral protein complex, envelope protein; HET: NAG; 2.05A {Mus musculus}

Probab=96.02  E-value=0.0083  Score=40.40  Aligned_cols=51  Identities=12%  Similarity=0.060  Sum_probs=33.8

Q ss_pred             cCcCCCc---cceeeeEEEEeec----CCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDK---EEVRRRRRRNQKN----LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~---~pvs~~I~L~V~y----pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |...+..   ......+.|+|..    +|.|.+..+......|..++|.|.+.++ |.+
T Consensus       102 C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~p~~~v~~g~~v~L~C~~~g~~P~~  160 (261)
T 2xqy_G          102 CGRLGYVYGFDYWGQGTTLTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP  160 (261)
T ss_dssp             EEEECTTSSEEEECCCEEEEECSSCCBCCEEEEECCCCC--CCSEEEEEEEEEEEBSSC
T ss_pred             EEEecCCCcceEECCCEEEEEccCCCCCCeEEEeCCCccccCCCcEEEEEEEEeEeCCC
Confidence            5555532   1233567888874    7888876544444679999999999986 765

>2wv3_A Neuroplastin; igcam, membrane, glycoprotein, cell membrane, cell adhesion, transmembrane, disulfide bond, alternative splicing; HET: NAG; 1.95A {Rattus norvegicus}

Probab=96.00  E-value=0.0062  Score=37.41  Aligned_cols=32  Identities=19%  Similarity=0.287  Sum_probs=25.8

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +.||.|..+........|..++|.|.+.+.|.
T Consensus         1 Q~~P~i~~~~~~~v~~~G~~v~l~C~~~~~~~   32 (190)
T 2wv3_A            1 QNEPRIVTSEEVIIRDSLLPVTLQCNLTSSSH   32 (190)
T ss_dssp             --CCEEEECCCEECCCSSSCEEEEEEEEECSS
T ss_pred             CCCCcccccceEEEccCCceEEEEEEeccCCC
Confidence            46899999877666555999999999999987

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=95.97  E-value=0.0063  Score=39.09  Aligned_cols=49  Identities=10%  Similarity=-0.046  Sum_probs=33.3

Q ss_pred             cCcCCCcc---ceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         17 EEPEKDKE---EVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        17 ~~~~~~~~---pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      |...+...   .....+.|+|.    .+|.|.+..+ .....|..++|.|.+.++ |.
T Consensus        96 C~~~~~~~~~~~~~~~~~L~V~~~~~~~P~v~~~~~-~~~~~g~~v~L~C~~~g~~P~  152 (220)
T 2fbj_H           96 CARLHYYGYNAYWGQGTLVTVSAESARNPTIYPLTL-PPALSSDPVIIGCLIHDYFPS  152 (220)
T ss_dssp             EEEEETTTEEEEECCCEEEEECSSCCBCCEEEEECC-CSSSCCSSEEEEEEEEEEBSC
T ss_pred             EEEeccccccceecCCEEEEecCCCCCCCEEEEeec-ccccCCCcEEEEEEEEeEECC
Confidence            55554432   13355688887    4688887652 234679999999999998 75

>2dku_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.97  E-value=0.0038  Score=35.63  Aligned_cols=32  Identities=19%  Similarity=0.136  Sum_probs=26.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|....+.+.+.+|..++|.|.+ +.|.+.|
T Consensus         8 pp~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v   39 (103)
T 2dku_A            8 ANCFTEELTNLQVEEKGTAVFTCKT-EHPAATV   39 (103)
T ss_dssp             CCCCSSCCCCEEEETTSEEEEEEEC-SSCCSCC
T ss_pred             CCEeEecCCcEEEeCCCcEEEEEEe-CCCCCeE
Confidence            6777777777888999999999995 8888765

>2c5d_C AXL oncogene, tyrosine-protein kinase receptor UFO; signaling protein/receptor, growth regulation/complex, vitamin K-dependent protein; HET: NAG; 3.3A {Homo sapiens}

Probab=95.96  E-value=0.012  Score=36.12  Aligned_cols=33  Identities=9%  Similarity=0.144  Sum_probs=29.1

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      ||.|..+.+.+...+|..++|.|.+. +.|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~~p~~~v   35 (195)
T 2c5d_C            2 ESPFVGNPGNITGARGLTGTLRCQLQVQGEPPEV   35 (195)
T ss_dssp             CCSEEECCCCEEECTTCCEEEEEEEEEESSCCCC
T ss_pred             CCeeccChhheEEecCCcEEEecccccCCCCcEE
Confidence            67788888888889999999999999 9998865

>1fnl_A Low affinity immunoglobulin gamma FC region receptor III-B; beta sandwich, immunoglobulin-like, immune system receptor; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1e4j_A 1e4k_C* 1t83_C* 1t89_C* 3ay4_C*

Probab=95.94  E-value=0.0078  Score=37.00  Aligned_cols=35  Identities=17%  Similarity=0.205  Sum_probs=30.4

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ...+|.|++..+.+...+|..++|.|.+.+.|.+.
T Consensus         4 ~~~~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~   38 (175)
T 1fnl_A            4 DLPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDN   38 (175)
T ss_dssp             CCCCCEEEEESCCSEEETTCCEEEEEECCCBTTBC
T ss_pred             CCCCCEEEEcCCceeeeCCCcEEEEeeCCCCCCCc
Confidence            34689999998887888999999999999998775

>1gl4_B Basement membrane-specific heparan sulfate proteoglycan core protein; immunoglobulin-like domain, extracellular matrix; HET: EPE; 2.0A {Mus musculus} SCOP: b.1.1.4

Probab=95.93  E-value=0.0088  Score=33.77  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=24.0

Q ss_pred             CCeEEEec-ceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         37 LPEIEVER-SWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        37 pPeI~v~~-~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      ||.+.+.. +.+...+|..++|.|.+. +.|.+.|
T Consensus         9 ~~~~~~~~~~~~~v~~G~~v~l~C~~~~~~p~~~v   43 (98)
T 1gl4_B            9 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTL   43 (98)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEE
T ss_pred             CcEEEEeCCCCeEEecCCCEEEEEeCCCCCCCcEE
Confidence            44455543 445678899999999999 5887754

>2ifg_A High affinity nerve growth factor receptor; TRK, TRKA, receptor-ligand complex transferase; HET: NAG NDG MAN BMA; 3.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 c.10.2.7

Probab=95.92  E-value=0.0051  Score=42.14  Aligned_cols=43  Identities=14%  Similarity=0.175  Sum_probs=36.7

Q ss_pred             eeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         27 RRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        27 s~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+.+.+-.+|.|.+..+.+...+|..+.|.|.+.+.|.+.|
T Consensus       148 l~~l~~~~c~~P~i~~~~~~~~v~~G~~v~L~C~~~g~p~p~i  190 (347)
T 2ifg_A          148 LAHMPNASCGVPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQA  190 (347)
T ss_dssp             SSCCCCTTCCCCEEEEECCSSCCBTTCCEEEEEEEECSSCCCC
T ss_pred             HhcCCcccCCCCceeccCCceEEeCCCcEEEEEEEecCCCCEE
Confidence            3455566667999999988888999999999999999999876

>2e6p_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.91  E-value=0.0024  Score=36.53  Aligned_cols=32  Identities=9%  Similarity=-0.008  Sum_probs=26.0

Q ss_pred             cCCeEEEecce---EEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEVERSW---VHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v~~~~---Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .||.+.+..+.   +...+|..++|.|.+.+.|.+
T Consensus         6 ~~P~~~~~p~~~~~~~v~~G~~v~l~C~~~~~p~~   40 (104)
T 2e6p_A            6 SGPVHILSPQDKVSLTFTTSERVVLTCELSRVDFP   40 (104)
T ss_dssp             SSSCCCCBCCSCEEEEEESSSCEECCEECSSTTCC
T ss_pred             CCCCEEECCCCCccEEEeCCCcEEEEEEecCCCCc
Confidence            46666666555   778999999999999999987

>2aty_A Complement receptor chimeric conjugate CR2-IG; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=95.90  E-value=0.0058  Score=43.13  Aligned_cols=51  Identities=6%  Similarity=0.039  Sum_probs=37.2

Q ss_pred             hcCcCCCcc--ceeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE--EVRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~--pvs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      -|.+.+...  +..+.+.+  .+..+|.|.+..+......|..++|.|.|.+++.
T Consensus       249 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~g~~~~L~C~~~g~~P  303 (376)
T 2aty_A          249 KCRVNSAAFPAPIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFP  303 (376)
T ss_pred             EEEEecCCCCCceEEEEcCCCCCCcCCeEEeeCCCHHHhcCCceEEEEEEEEeEC
Confidence            355554433  45555555  7889999999877666666999999999999643

>4fqp_A Poliovirus receptor; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA FUC MAN; 3.60A {Homo sapiens} PDB: 1nn8_R 1dgi_R

Probab=95.82  E-value=0.017  Score=38.30  Aligned_cols=53  Identities=11%  Similarity=-0.073  Sum_probs=43.5

Q ss_pred             cCc-CCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         17 EEP-EKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        17 ~~~-~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      |.+ .+.+...+..+.|+|..+|.+....+.+....|..+.|.|.+. +.|.+.|
T Consensus        96 C~v~~~~~~~~~~~~~l~v~~~P~~~~~~~~~~~~~~~~~~~~C~~~~~~P~~~i  150 (313)
T 4fqp_A           96 CLFVTFPQGSRSVDIWLRVLAKPQNTAEVQKVQLTGEPVPMARCVSTGGRPPAQI  150 (313)
T ss_dssp             EEEECSSSCEEEEEEEECCBBCCEEEEEECCBCCCSSCEEEEEEEEEEEBSCCEE
T ss_pred             EEEeeccCcceeeeeeeeeccCCcceecccceEeecCceEEEEEEccCccCCcEE
Confidence            555 3455677889999999999999998888888899999999875 7788764

>2v5m_A Dscam; neurobiology SPL immunoglobulin domain, cell adhesion, membrane, development protein; HET: NAG; 1.95A {Drosophila melanogaster} PDB: 2v5s_A* 2v5r_A*

Probab=95.82  E-value=0.0027  Score=42.86  Aligned_cols=51  Identities=12%  Similarity=0.030  Sum_probs=41.6

Q ss_pred             hcCcCCCcc-ceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+... ..++.+.|+|.++|.+....+-+....|..++|.|.+.+.|.
T Consensus        81 ~C~a~n~~g~~~s~~~~v~v~~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~  132 (388)
T 2v5m_A           81 ACLARNQFGSIISRDVHVRAVVAQYYEADVNKEHVIRGNSAVIKCLIPSFVA  132 (388)
T ss_dssp             EEEEEETTEEEECCCEEEEEECCCCCCCBCCCEEEETTSCEEECCBCCTTTT
T ss_pred             EEEEEccCCeEEecceEEEEccccccccCccceeeecCCcEEEEEECcCCCC
Confidence            467766544 357889999999999988877778889999999999998764

>1dn0_B IGM-kappa cold agglutinin (heavy chain); FAB, antibody, human, immune system; 2.28A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1qlr_B* 2j6e_H* 2agj_H* 2h32_H

Probab=95.77  E-value=0.015  Score=37.85  Aligned_cols=41  Identities=12%  Similarity=0.102  Sum_probs=27.3

Q ss_pred             eeeEEEEeec----CCeEEEecceEEeccC-CcEEEEEEEeee-CCC
Q psy15736         27 RRRRRRNQKN----LPEIEVERSWVHSGEG-YEAQLVCIVHAE-PHA   67 (70)
Q Consensus        27 s~~I~L~V~y----pPeI~v~~~~Vha~~G-~~a~L~CiV~A~-P~a   67 (70)
                      ...+.|+|..    +|.|.+..+......| ..++|.|.+.++ |.+
T Consensus       111 ~~~~~L~V~~~~~~~P~v~~~~p~~~~~~g~~~v~L~C~~~g~~P~p  157 (232)
T 1dn0_B          111 GQGTLVTVSSGSASAPTLFPLVSCENSPSDTSSVAVGCLAQDFLPDS  157 (232)
T ss_dssp             CCCEEEEECSSCCBCCEEEEEECC------CCSEEEEEEEEEEBSSC
T ss_pred             ccceEEEEccCCCCCCceEEeccccccCCCCCcEEEEEEEEEEeCCC
Confidence            3567888875    5888876544444578 999999999997 765

>3qhz_H Human monoclonal antibody DEL2D1, FAB heavy chain; immunoglobulin, immune recognition, influenza A hemagglutini system; 1.55A {Homo sapiens} PDB: 3lzf_H* 3qrg_H* 3mod_H 3mob_H 3moa_H 3lev_H* 3idg_B 3d0l_B 3d0v_B 3idi_B 3idj_B 3idm_B* 3idn_B* 1tjg_H* 1tjh_H* 1tji_H* 2pr4_H 3drq_B 2p8m_B 2p8p_B ...

Probab=95.75  E-value=0.021  Score=36.65  Aligned_cols=42  Identities=19%  Similarity=0.056  Sum_probs=26.5

Q ss_pred             eeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         26 VRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        26 vs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ......|.|.    .+|.|.+..+......|..++|.|.+.++|.+
T Consensus       117 ~~~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P~  162 (232)
T 3qhz_H          117 WGRGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (232)
T ss_dssp             ECCCEEEEECSSCCBCCEEEEECC-------CEEEEEEEEEEEBSS
T ss_pred             eCCCeEEEEecCCCCCCEEEEecccccccCCCcEEEEEEEeeEeCC
Confidence            3455667775    78999865554444569999999999997653

>1qgc_4 Protein (immunoglobulin); virus-antibody complex, icosahedral virus, virus-immune SYST complex; 30.00A {Mus musculus} SCOP: i.6.1.1

Probab=95.72  E-value=0.013  Score=40.31  Aligned_cols=49  Identities=10%  Similarity=-0.056  Sum_probs=31.3

Q ss_pred             hcCcCCCccceeeeEEEEee-cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQK-NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~-ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+.+......+.+.+. .++.+..+ +.+.+.+|..++|.|.+.+.|
T Consensus       197 ~C~a~n~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~g~p  246 (438)
T 1qgc_4          197 TCEATHKTSTSPIVKSFNRNECEVMLVES-GGGLVKPGGSLKLSCTASGFI  246 (438)
T ss_dssp             EEEEEETTCSSCEEEEEETTC-CCEEEEE-CCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEEecccCCceecccccccceeEEecC-CceEEecCCcEEEEEEEcccc
Confidence            46777665554333444433 33444444 445578999999999999998

>1hzh_H IGG, immunoglobulin heavy chain; antibody, immune system; HET: NAG BMA MAN GAL FUC; 2.70A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2 PDB: 2ig2_H 1mco_H*

Probab=95.71  E-value=0.012  Score=41.33  Aligned_cols=40  Identities=20%  Similarity=0.161  Sum_probs=31.1

Q ss_pred             eeeEEEEeec----CCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         27 RRRRRRNQKN----LPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        27 s~~I~L~V~y----pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      .....|.|..    +|.|....+......|..++|.|.+.+. |.
T Consensus       118 ~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~  162 (457)
T 1hzh_H          118 GKGTTVIVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPE  162 (457)
T ss_dssp             CCCEEEEECSCCCBCCEEEEECCCSCCCTTCCEEEEEEEESBBSC
T ss_pred             CCcEEEEecCCCCCCCeEEecCccccccCCCcEEEEEEEeEEeCC
Confidence            3556788875    7888876655556789999999999988 64

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=95.71  E-value=0.0092  Score=38.87  Aligned_cols=52  Identities=8%  Similarity=-0.084  Sum_probs=37.8

Q ss_pred             cCcCCCcc---ceeeeEEEEeec-----------------CCeEEEecceEEeccCCcEEEEEEEeee-CCCC
Q psy15736         17 EEPEKDKE---EVRRRRRRNQKN-----------------LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHAD   68 (70)
Q Consensus        17 ~~~~~~~~---pvs~~I~L~V~y-----------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a~   68 (70)
                      |.+.+...   .......|.|..                 +|.|....+.+.+.+|..++|.|.+.+. |.+.
T Consensus        96 C~~~~~~~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~~  168 (259)
T 3omz_A           96 CATWDQNYYKKLFGSGTSLVVTDKQGSADDAKKDAAKKDGAQKVTQAQSSVSMPVRKAVTLNCLYETSWWSYY  168 (259)
T ss_dssp             EEEECTTSSCEEECCCEEEEEEC------------------CEEECCCCCEEEETTCCEEECCEEECCCSSCE
T ss_pred             EEEeeCCccccEECCCCEEEEecCCCCccccccccccccCCeeeEEeCCEEEEcCCCCEEEEEECCCccCCce
Confidence            66655433   455667888887                 4677777777888999999999998874 5443

>2if7_A SLAM family member 6; NTB-A, homophilic receptor, immune system; 3.00A {Homo sapiens}

Probab=95.71  E-value=0.014  Score=36.88  Aligned_cols=52  Identities=8%  Similarity=-0.020  Sum_probs=34.2

Q ss_pred             hcCcCCCccceeeeEEEEeecC---CeEEEecceEEeccCC-cEEEEEEEeeeC-CCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL---PEIEVERSWVHSGEGY-EAQLVCIVHAEP-HADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~-~a~L~CiV~A~P-~a~V   69 (70)
                      .|.+.+......+.+.|+|.-+   |.|....+.  ...|. .++|.|.+.+.| .+.|
T Consensus        86 ~C~~~~~~~~~~~~~~L~V~~~~~~p~i~~~~~~--~~~g~~~v~L~C~~~g~~p~p~i  142 (193)
T 2if7_A           86 RAQISTKTSAKLSSYTLRILRQLRNIQVTNHSQL--FQNMTCELHLTCSVEDADDNVSF  142 (193)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCEEEEEEECCC-----CSSEEEEEEEEEESCCTTCEE
T ss_pred             EEEEEecCCCeEEEEEEEEEccCCCCeEecCcee--ecCCCceEEEEEEEecCCCceEE
Confidence            4667666666677899999766   445544322  22365 899999999964 6654

>2dlt_A Myosin binding protein C, fast-type; IG-like domain, mybpc2, structural genomics, NPPSFA; NMR {Mus musculus}

Probab=95.70  E-value=0.004  Score=35.92  Aligned_cols=32  Identities=16%  Similarity=0.091  Sum_probs=27.6

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -||.|..+.+-+.+.+|..++|.|.+.+.|.+
T Consensus         7 ~~p~~~~~~~~~~v~~G~~v~l~C~~~~~~~~   38 (106)
T 2dlt_A            7 GQLEVLQDIADLTVKAAEQAVFKCEVSDEKVT   38 (106)
T ss_dssp             CCCCEEECCCCEEEESSCCEECCCEESCSSCE
T ss_pred             CCCEEecCCCCeEEeCCCeEEEEEEEcCCCcc
Confidence            36888888777888999999999999998875

>4acp_A IG gamma-1 chain C region; immune system, antibody, kifunensine; HET: NAG; 2.49A {Homo sapiens} PDB: 2j6e_A*

Probab=95.70  E-value=0.0093  Score=40.34  Aligned_cols=52  Identities=12%  Similarity=0.175  Sum_probs=36.6

Q ss_pred             hcCcCCCc--cceeeeEEE--EeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         16 EEEPEKDK--EEVRRRRRR--NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        16 ~~~~~~~~--~pvs~~I~L--~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      -|.+.+.+  .+..+.+.+  .+.++|.|.+..+-.....|..++|.|.+.++ |.+
T Consensus       105 tC~v~h~~~~~~~~~~i~~~~~~~~~P~V~v~~~~~~~~~g~~~~L~C~~~gf~P~~  161 (240)
T 4acp_A          105 KCKVSNKALPAPIEKTISKAKGQPREPQVYTLPPSRDELTKNQVSLTCLVKGFYPSD  161 (240)
T ss_dssp             EEEEECC----CEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBSSC
T ss_pred             EEEEEcCCCCccccccccccCCCCCCCEEEEECCChHHhcCCceEEEEEEeEEeCCC
Confidence            47877766  356667663  57799999987554333459999999999995 543

>1waa_A Titin; metal binding protein, calmodulin-binding, cytoskeleton, immunoglobulin domain, muscle protein, phosphorylation, repeat; 1.80A {Homo sapiens} PDB: 1waa_E 1waa_F 1tit_A 1tiu_A 2rq8_A

Probab=95.67  E-value=0.017  Score=33.56  Aligned_cols=33  Identities=21%  Similarity=0.093  Sum_probs=26.4

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -||.|..+-+-+...+|+.++|.|.+.+ |.+.|
T Consensus         4 ~~~~~~~~~~~~~v~~G~~v~l~C~v~~-~~~~v   36 (93)
T 1waa_A            4 ALIEVEKPLYGVEVFVGETAHFEIELSE-PDVHG   36 (93)
T ss_dssp             CCCCEEECCCCEEEETTSCEEEEEEESS-SSCCC
T ss_pred             CCcEeeccCcceEEeCCCCEEEEEEECC-CCCeE
Confidence            3678888777788899999999999986 44544

>2bk8_A Connectin, M1, titin heart isoform N2-B; IG domain, M-BAND, structural protein, muscle, antibo; 1.69A {Homo sapiens}

Probab=95.66  E-value=0.011  Score=33.21  Aligned_cols=30  Identities=13%  Similarity=0.175  Sum_probs=23.5

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee-CCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE-PHADP   69 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~-P~a~V   69 (70)
                      |..+..-+.+.+|..++|.|.+.+. |.+.|
T Consensus         4 v~~~~~~~~v~~G~~v~l~C~~~g~~p~~~v   34 (97)
T 2bk8_A            4 VSGQIMHAVGEEGGHVKYVCKIENYDQSTQV   34 (97)
T ss_dssp             EECCCCCEEECTTCCEEEEEEEESCCTTCEE
T ss_pred             eeccCcCEEEcCCCcEEEEEEEeccCCCCEE
Confidence            4444455677899999999999997 87754

>2y23_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin- like; 2.50A {Homo sapiens}

Probab=95.60  E-value=0.013  Score=38.06  Aligned_cols=32  Identities=19%  Similarity=0.068  Sum_probs=26.6

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ..+|.+....+ +....|..++|.|.+.+.|.+
T Consensus       220 ~~~p~~~~~~~-~~v~~G~~~~l~C~~~~~p~~  251 (312)
T 2y23_A          220 KQGPHFVEYLS-WEVTGECNVLLKCKVANIKKE  251 (312)
T ss_dssp             HHSSEEEEEEE-EEEETTTEEEEEEEEESCCSS
T ss_pred             ccCCceeecce-EEEeCCCEEEEEEEEcCCCCC
Confidence            45688776665 667899999999999999987

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=95.58  E-value=0.01  Score=37.95  Aligned_cols=51  Identities=16%  Similarity=0.077  Sum_probs=34.6

Q ss_pred             cCcCCCc----cceeeeEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDK----EEVRRRRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~----~pvs~~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+.+    ......+.|.|.      ++|.|.+..+. .....|..++|.|.+.+.|.+
T Consensus        94 C~~~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~i~~~~~~~~~~~~g~~v~L~C~~~g~~p~  155 (246)
T 4dzb_B           94 CSARTSGDFGEQFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  155 (246)
T ss_dssp             EEECCSSGGGCCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEecCCCCcceEEcCCEEEEEecCCCcccCCceEeecCCchhccCCCcEEEEEEEccCcCC
Confidence            6665432    234456677776      68988875432 223459999999999998865

>2gki_A Nuclease; anti-DNA antibody, catalytic antibody, immune system; 2.88A {Mus musculus}

Probab=95.58  E-value=0.011  Score=39.85  Aligned_cols=40  Identities=8%  Similarity=0.021  Sum_probs=31.4

Q ss_pred             eeEEEEeec----------------CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         28 RRRRRNQKN----------------LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        28 ~~I~L~V~y----------------pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ..+.|.|..                +|.|....+.+.+.+|..++|.|.+.+.|.+
T Consensus       134 ~~~~L~V~~~~~~~~~~~~~~~~~~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~  189 (291)
T 2gki_A          134 QGTSVTVSSRGGGGSGGGGSGGGGSDLVMSQSPSSLAVSAGEKVTMSCKSSQSLFN  189 (291)
T ss_dssp             CCEEEEECC----------------CCCEECSCSEEEEETTSCEEEEEEESSCCEE
T ss_pred             CCcEEEEecCCccccccccCCCCCccceEEcCCCEEEEcCCCcEEEEEEcCCcccc
Confidence            456888887                4566665567778899999999999988764

>1f97_A Junction adhesion molecule; immunoglobulin superfamily, beta-sandwich fold, cell adhesion; 2.50A {Mus musculus} SCOP: b.1.1.1 b.1.1.4

Probab=95.57  E-value=0.0081  Score=36.73  Aligned_cols=33  Identities=15%  Similarity=0.085  Sum_probs=28.1

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+.|..+.+-+...+|..++|.|.+.+.|.+.|
T Consensus         1 ~~~v~~~~~~~~v~~G~~v~L~C~~~~~p~~~v   33 (212)
T 1f97_A            1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRV   33 (212)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEE
T ss_pred             CceEEecCCCeEEEcCCCEEEEeEeCCCCCcEE
Confidence            466777888888899999999999999887654

>1rhf_A Tyrosine-protein kinase receptor TYRO3; AXL/TYRO3 family, cellular adhesion, ligand-independent DIME mutational analysis, transferase; HET: EPE; 1.96A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4

Probab=95.56  E-value=0.01  Score=35.92  Aligned_cols=33  Identities=15%  Similarity=0.116  Sum_probs=24.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+.+.+...+|..++|.|.+.+.|.+.|
T Consensus         2 ~~~~~~~p~~~~v~~G~~v~l~C~~~~~p~~~v   34 (182)
T 1rhf_A            2 GLKLMGAPVKLTVSQGQPVKLNCSVEGMEEPDI   34 (182)
T ss_dssp             -----CCCEEEEEETTCCEEEEEEEESCSSCCE
T ss_pred             CCEEEeCCcceEEeCCCcEEEEEEEeCCCCCeE
Confidence            456666666788899999999999999998765

>2eny_A Obscurin; beta-sandwich, IG-fold, structural genomics, NPPSFA national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=95.56  E-value=0.0085  Score=35.18  Aligned_cols=31  Identities=16%  Similarity=0.188  Sum_probs=25.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ||.|..+.+-+...+|+.++|.|.+.+.|.+
T Consensus         8 p~~~~~~~~~~~v~~G~~v~l~C~v~~~~~~   38 (104)
T 2eny_A            8 HVGITKRLKTMEVLEGESCSFECVLSHESAS   38 (104)
T ss_dssp             CCCCSBCCCCEEEESSCCEEEEEECSSCCCS
T ss_pred             CCEEEecCCCcEEcCCCcEEEEEEEcCCCCC
Confidence            4466666677888999999999999998854

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=95.55  E-value=0.018  Score=37.59  Aligned_cols=51  Identities=10%  Similarity=-0.012  Sum_probs=29.8

Q ss_pred             hcCcCCCccceeeeEEEE----eecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRRN----QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~----V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+..........|.    ...+|.|.+..+......|..++|.|.+.+++.
T Consensus        93 ~C~~~~~~~~~~~~~~v~~~~~~~~~P~v~v~~~~~~~~~~~~~~L~C~~~g~~P  147 (231)
T 2w59_A           93 TCTVQHEELPLPLSKSVYRNTGPTTPPLIYPFAPHPEELSLSRVTLSCLVRGFRP  147 (231)
T ss_dssp             EEEEECTTCSSCEEEEECCCCSCCBCCEEEEECCCGGGGGSSEEEEEEEEEEEBS
T ss_pred             EEEEEcCCCCCceEEEEecCCCCCcCCEEEEeCCCHHHhccCceEEEEEEEeccC
Confidence            366666543322222232    237899887644322233567999999999744

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=95.51  E-value=0.0018  Score=45.97  Aligned_cols=40  Identities=13%  Similarity=0.096  Sum_probs=8.2

Q ss_pred             ceeeeEEEEeecCCe----EEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         25 EVRRRRRRNQKNLPE----IEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        25 pvs~~I~L~V~ypPe----I~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ..++.+.|+|+|+|.    |..+.   .-.+|..++|.|.+.+.|+|
T Consensus       175 ~~s~~~~L~V~~~P~~~~~~~~p~---~l~eG~~v~l~C~~~g~~P~  218 (291)
T 1mq8_A          175 NTSAPYQLQTFVLPATPPQLVSPR---VLEVDTQGTVVCSLDGLFPV  218 (291)
T ss_dssp             ECCCCEECBC-------------------------------------
T ss_pred             ccccceEEEEEecCCCCceecCCc---CccCCCeEEEEEEcCCCCCC
Confidence            467788999999953    34432   33579999999999998654

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=95.49  E-value=0.011  Score=38.36  Aligned_cols=51  Identities=10%  Similarity=-0.018  Sum_probs=34.0

Q ss_pred             cCcCCCcc-ceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+... .....+.|.|.   .+|.|.+..+......|..++|.|.+.+.|.+
T Consensus       126 C~~~~~~~~~~~~~~~l~V~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  180 (252)
T 3bkj_L          126 CFQASLVPLTFGAGTKLELKRADAAPTVSIFPPSSEQLTSGGASVVCFLNNFYPK  180 (252)
T ss_dssp             EEECSBSSCEECCCEEEEECCCCBCCEEEEECCCHHHHHHTEEEEEEEEEEEBSS
T ss_pred             EEEEcCCccEECCCEEEEEeCCCcCcEEEEeCCChhhcCCCcEEEEEEEeeEeCC
Confidence            66666533 22344567776   47999885443334469999999999996543

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=95.48  E-value=0.0043  Score=37.77  Aligned_cols=30  Identities=20%  Similarity=0.310  Sum_probs=23.6

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |+|+-||+|       .+.+|+.|+|.|.+.+.|.+.
T Consensus         3 v~V~vp~~V-------~~~~G~~v~L~C~~~~~~~~~   32 (225)
T 4fmk_A            3 VRVRVLPEV-------RGRLGGTVELPCHLLPPTTER   32 (225)
T ss_dssp             CSEECCSEE-------EEETTSCEEECCEECSSCCCE
T ss_pred             EEEEeCCEE-------EEecCCCEEEEEEEECCCCCc
Confidence            456677765       456899999999999888763

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=95.47  E-value=0.014  Score=41.54  Aligned_cols=51  Identities=8%  Similarity=0.000  Sum_probs=35.4

Q ss_pred             hcCcCCCccceeeeEEE---EeecCCeEEEecceE-EeccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKEEVRRRRRR---NQKNLPEIEVERSWV-HSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L---~V~ypPeI~v~~~~V-ha~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+..........|   .+.++|.|.+..+.. ....|..++|.|.+.++|.
T Consensus       325 ~C~a~n~~~~~~~~~~v~~~~~~~~P~v~~~~~~~~~v~~g~~~~L~C~~~g~~P  379 (475)
T 1iga_A          325 TCTAAYPESKTPLTATLSKSGNTFRPEVHLLPPPSEELALNELVTLTCLARGFSP  379 (475)
T ss_pred             EEEEEcCCCCCceEEEeecCCCCCCCeEEEECCChHHhccCCceEEEEEEeeeEC
Confidence            57777766654333344   458999998875432 2357999999999999744

>1igt_B IGG2A intact antibody - MAB231; intact immunoglobulin V region C region, immunoglobulin; HET: NAG FUL BMA MAN GAL FUC; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 b.1.1.2 b.1.1.2

Probab=95.44  E-value=0.02  Score=40.03  Aligned_cols=51  Identities=12%  Similarity=0.083  Sum_probs=34.7

Q ss_pred             cCcCCCccc---eeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         17 EEPEKDKEE---VRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        17 ~~~~~~~~p---vs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |.+.+....   ....+.|.|.    .+|.|....+......|..++|.|.+.+. |.+
T Consensus        96 C~~~~~~~~~~~~~~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~g~~P~p  154 (444)
T 1igt_B           96 CARHGGYYAMDYWGQGTTVTVSSAKTTAPSVYPLAPVCGDTTGSSVTLGCLVKGYFPEP  154 (444)
T ss_dssp             EEEECSSSCEEEEBCCEEEEECSCCCBCCEEEEECCCSSCCCSSCEEEEEEEEEEBSSC
T ss_pred             EEEecCCcccccccCcEEEEecCCCCCCCceeEecccccCCCCCcEEEEEEEcceeCCC
Confidence            666554322   3345677777    47888765444344789999999999996 765

>2yuv_A Myosin-binding protein C, SLOW-type; SLOW-type myosin-binding protein C, immunoglobulin domain, structural genomics, NPPSFA; NMR {Homo sapiens} PDB: 2yxm_A

Probab=95.44  E-value=0.015  Score=33.06  Aligned_cols=32  Identities=9%  Similarity=0.070  Sum_probs=25.0

Q ss_pred             CCeEEEecc-eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERS-WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~-~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+.+ .+....|..++|.|.+. .|.+.|
T Consensus         7 ~p~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v   39 (100)
T 2yuv_A            7 GAAFAKILDPAYQVDKGGRVRFVVELA-DPKLEV   39 (100)
T ss_dssp             SCCEEECCCSCEEECTTEEEEEEEEES-CTTSCE
T ss_pred             CCeEEecCCCccEEcCCCcEEEEEEec-CCCceE
Confidence            677776644 46778999999999998 787764

>3kld_A Contactin 4, axcam, BIG-2; cell adhesion, protein complex, receptor protein tyrosine phosphatase; HET: NAG; 2.00A {Mus musculus} PDB: 3jxa_A*

Probab=95.43  E-value=0.023  Score=39.15  Aligned_cols=36  Identities=25%  Similarity=0.358  Sum_probs=29.4

Q ss_pred             eecCCeEEEec-ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVER-SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~-~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..|+|.|.+.. +.+.+.+|..++|.|.+.+.|.+.+
T Consensus       201 ~~~~p~~~~~~~~~~~~~~G~~v~l~C~~~g~P~p~i  237 (384)
T 3kld_A          201 GEYEPKIEVQFPETVPAEKGTTVKLECFALGNPVPTI  237 (384)
T ss_dssp             CCEEEEEEEECCSEEEEETTSCEEEEEEEEEESCCEE
T ss_pred             cccCCceeecCCCceEecCCCcEEEEEEEeecCCCcE
Confidence            35788887763 4667789999999999999999865

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=95.43  E-value=0.02  Score=37.93  Aligned_cols=50  Identities=8%  Similarity=-0.051  Sum_probs=31.1

Q ss_pred             hcCcCCCccc-eeeeEEEEeecCCe-------------EEEe-cceEEeccCCcEEEEEEEeeeC
Q psy15736         16 EEEPEKDKEE-VRRRRRRNQKNLPE-------------IEVE-RSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        16 ~~~~~~~~~p-vs~~I~L~V~ypPe-------------I~v~-~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|.+.+.... .+....|.|..+|.             +.+. .+.+.+.+|..++|.|.+.+.|
T Consensus        98 ~C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~p~~~~~~p~~~~v~~G~~v~L~C~~~g~~  162 (276)
T 3auv_A           98 YCQQHYTTPPTFGCGTKVEIKGGGGGSIEGRSGGGGSEVQLVESGGGLVQPGGSLRLSCAASGFT  162 (276)
T ss_dssp             EEEECSSSSCCCCCCEEEEC-----------------CCEEEEECCEEECTTCCEEEEEEEESSC
T ss_pred             EEEEecCCcccccCCEEEEEecCCCccccccccccCcceEEECCCceEecCCCeEEEEEEecCcc
Confidence            3666665332 44557888888653             3332 2456778999999999999876

>1x44_A Myosin-binding protein C, SLOW-type; IG-like domain, SLOW- type/skeletal muscle SLOW-isoform, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=95.43  E-value=0.0079  Score=34.47  Aligned_cols=32  Identities=16%  Similarity=0.037  Sum_probs=24.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|....+-+.+.+|..++|.|.+.+ |.+.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~~~~-~~~~v   38 (103)
T 1x44_A            7 GIMVTKQLEDTTAYCGERVELECEVSE-DDANV   38 (103)
T ss_dssp             SCCCSBCCCCEEEETTEEEEEEEECSS-SSCCC
T ss_pred             CceeeccCCCEEEECCCCEEEEEEecC-CCCeE
Confidence            344555555677789999999999987 66654

>3o4o_C Interleukin-1 receptor type 2; cytokine-receptor complex, beta-trefoil, IG-like fold, immun; HET: NAG; 3.30A {Homo sapiens}

Probab=95.42  E-value=0.0066  Score=40.44  Aligned_cols=54  Identities=6%  Similarity=-0.157  Sum_probs=41.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEe--cceEEeccCCcEEEEEE-----EeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVE--RSWVHSGEGYEAQLVCI-----VHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~--~~~Vha~~G~~a~L~Ci-----V~A~P~a~V   69 (70)
                      .|.+.+.....+..+.|.|..+|.+..+  ........|..+.|.|.     +.+.|.+.|
T Consensus        97 ~C~~~n~~g~~~~~~~l~V~~~~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~g~p~~~v  157 (339)
T 3o4o_C           97 VCTTRNASYCDKMSIELRVFENTDAFLPFISYPQILTLSTSGVLVCPDLSEFTRDKTDVKI  157 (339)
T ss_dssp             ECCEEETTEEEEEEEEEEEECSCGGGHHHHCEEEEEETTSCEEEECCSCTTTCCSSSCCCB
T ss_pred             EEEEECCcceEEEEEEEEEEcCCCccccccccceEEECCCCEEEEecCCcccccCCCCceE
Confidence            4777777778889999999999875321  11234578999999999     788888876

>1cs6_A Axonin-1; neural cell adhesion, cell adhesion; 1.80A {Gallus gallus} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 b.1.1.4 PDB: 2om5_A

Probab=95.42  E-value=0.0069  Score=40.90  Aligned_cols=35  Identities=20%  Similarity=0.194  Sum_probs=28.6

Q ss_pred             ecCCeEEEecceEEe---ccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHS---GEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha---~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|+|.|..+-+.+..   ..|..++|.|.+.+.|.+.|
T Consensus         2 ~~~P~~~~~p~~~~~~~~~~g~~v~l~C~~~g~p~~~v   39 (382)
T 1cs6_A            2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATY   39 (382)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEE
T ss_pred             CCCCEEEECCCcEEEecCCCCCcEEEEEEecCCCCCEE
Confidence            578999887555554   67999999999999998764

>2j6e_L IGM, FAB light chain; autoimmune complex human IGM rheumatoid factor IGG1-FC, immunoglobulin C region, membrane, glycoprotein, transmembrane; HET: NAG FUL BMA MAN NDG GAL; 3.0A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=95.42  E-value=0.0012  Score=41.91  Aligned_cols=51  Identities=14%  Similarity=0.076  Sum_probs=34.6

Q ss_pred             cCcCCCcc---ceeeeEEEEe----ecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKE---EVRRRRRRNQ----KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~---pvs~~I~L~V----~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+...   .....+.|.|    ..+|.|.+..+......|..++|.|.+.+.|.+
T Consensus       108 C~~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~~~~g~~v~L~C~~~g~~p~  165 (234)
T 2j6e_L          108 CATWDDSLSAVIFGGGTKLTVLGQPKAAPSVTLFPPSSEELQANKATLVCLISDFFPG  165 (234)
T ss_dssp             EEEEETTTTEEEECCCBCCCBCCCCCCCCCCCEECCCHHHHTTSCCCEEECCCBCSSC
T ss_pred             EEEEcCCcceeEecCCEEEEEecCCCCCCcccccCCChhHhcCCceEEEEEEEEEcCC
Confidence            56655543   3345677788    378888875544334468899999999997543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=95.42  E-value=0.013  Score=36.52  Aligned_cols=49  Identities=8%  Similarity=0.040  Sum_probs=33.4

Q ss_pred             cCcCCCc--cceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDK--EEVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~--~pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |.+.+..  ...+..+.|.|.   .+|.|....+ .....|..++|.|.+.+.|.
T Consensus        69 C~a~n~~g~~~~s~~~~l~V~~~~~~p~i~~~p~-~~v~~G~~v~l~C~~~~~~~  122 (184)
T 2gi7_A           69 CSYQNGSLWSLPSDQLELVATGVFAKPSLSAQPG-PAVSSGGDVTLQCQTRYGFD  122 (184)
T ss_dssp             EEEEETTEEBCCCCCEEEEEESSSCCCEEEEECC-CSSCCTTCEEEEEECSSCCC
T ss_pred             EEEEcCCCccCCCCCEEEEecCcCCCCEEEeCCC-ceecCCCcEEEEEEcCCCCc
Confidence            6665543  234566778774   3788887653 34468999999999887663

>4dep_C Interleukin-1 receptor accessory protein; B-trefoil, immunoglobulin, immune system, extracellular; HET: NAG; 3.10A {Homo sapiens} PDB: 3o4o_B*

Probab=95.39  E-value=0.0058  Score=40.89  Aligned_cols=54  Identities=4%  Similarity=-0.261  Sum_probs=41.2

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecc----eEEeccCCcEEEEEEE-----eeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERS----WVHSGEGYEAQLVCIV-----HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~----~Vha~~G~~a~L~CiV-----~A~P~a~V   69 (70)
                      .|.+.+........+.|+|..+|.+..+..    -+...+|..+.|.|.+     .+.|.+.|
T Consensus        95 ~C~a~n~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~g~~~~l~C~~~~~~~~g~p~~~v  157 (349)
T 4dep_C           95 TCMLRNTTYCSKVAFPLEVVQKDSCFNSPMKLPVHKLYIEYGIQRITCPNVDGYFPSSVKPTI  157 (349)
T ss_dssp             EEEEECSSCEEEEEEEEEEECCCTTSCCSCCCCEEEEETTCSEEEEECCSCTTSSCTTSCCEE
T ss_pred             EEEEecCCceEEEEEEEEEecCCcccCcccccCcceeeecCccEEEEcCCCcccccCCCCceE
Confidence            588888888888899999998886554432    3345789999999974     77787764

>1bec_A 14.3.D T cell antigen receptor; T cell receptor; 1.70A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1jck_A 1l0x_A 1sbb_A 1l0y_A 3c6l_B 1mwa_B* 1g6r_B* 1tcr_B* 2ckb_B 2q86_B* 1lp9_F 2j8u_F 2jcc_F 2uwe_F 3mbe_D* 1d9k_B* 2aq3_A 3mc0_A 3byt_A 3bzd_A ...

Probab=95.39  E-value=0.011  Score=38.31  Aligned_cols=40  Identities=18%  Similarity=0.256  Sum_probs=29.1

Q ss_pred             eeEEEEeec------CCeEEEecce-EEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQKN------LPEIEVERSW-VHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~y------pPeI~v~~~~-Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ..+.|+|..      +|.|.+..+. +....|..++|.|.+.++ |.+
T Consensus       105 ~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  152 (238)
T 1bec_A          105 PGTRLTVLEDLRQVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  152 (238)
T ss_dssp             CCEEEEEESCGGGCBCCEEEEECCCSTTCSSSCSCSEEEEEEEEBSCC
T ss_pred             CCEEEEEeccCCCCCCCceEEECCChHHcccCCceEEEEEEeeEeCCC
Confidence            445677764      8999886543 233479999999999997 654

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=95.38  E-value=0.0041  Score=38.18  Aligned_cols=34  Identities=15%  Similarity=0.253  Sum_probs=26.3

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |..+|.|.+..+.+...+|..++|.|.+.+.|.+
T Consensus         1 v~~~P~i~~~p~~~~v~~G~~v~L~C~~~~~~~~   34 (176)
T 1f2q_A            1 VPQKPKVSLNPPWNRIFKGENVTLTCNGNNFFEV   34 (176)
T ss_dssp             ---CCCCEEESSCSEEETTCCEEEECCTTCC---
T ss_pred             CCCCCEEEcCCCCcceecCCcEEEEEeCCCCCCc
Confidence            5678999999888888999999999999999875

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=95.37  E-value=0.026  Score=35.76  Aligned_cols=52  Identities=8%  Similarity=-0.191  Sum_probs=36.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeee-CCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a~V   69 (70)
                      .|.+.+........+.+.+.  |.+...........|..+.|.|.+.+. |.|.|
T Consensus        99 ~C~a~n~~~~~~~~v~~~~~--~~~~~~~~~~~~~~g~~v~l~c~~~g~~P~p~i  151 (226)
T 4f80_A           99 LCYFQDGDFYEKALVELKVA--ALGSDLHVDVKGYKDGGIHLECRSTGWYPQPQI  151 (226)
T ss_dssp             EEEEEETTEEEEEEEEEEEE--BCCCCCEEEEEEEETTEEEEEEEEEEEBSCCEE
T ss_pred             EEEEECCCcEEEEEEEEeec--cceecccceeeeccCCceeeEEEeccCCCCCEE
Confidence            47777766666555555554  444445555666789999999999984 88865

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=95.34  E-value=0.02  Score=35.76  Aligned_cols=48  Identities=10%  Similarity=0.001  Sum_probs=32.1

Q ss_pred             cCcCCC--ccceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         17 EEPEKD--KEEVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        17 ~~~~~~--~~pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |.+.+.  ....+..+.|.|..   +|.|....+. ...+|..++|.|.+.+.|
T Consensus        74 C~~~~~~~~~~~s~~~~l~V~~~~~~p~i~~~p~~-~v~~G~~v~L~C~~~~~~  126 (188)
T 1oll_A           74 CIYRVGELWSEPSNLLDLVVTEMYDTPTLSVHPGP-EVISGEKVTFYCRLDTAT  126 (188)
T ss_dssp             EEEEETTEECCCCCCEEEEEESCSCCCEEEEESCS-EEETTCEEEEEEECSSSC
T ss_pred             EEecCCCCCCCCCCceEEEecccCCCCeEEECCCC-ccccCCEEEEEEEcCCCC
Confidence            555442  12235667777763   7888876543 347899999999987654

>2dm7_A KIAA1556 protein; beta-sandwich, IG-fold, obscurin, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens} PDB: 2edl_A 2edw_A 2gqh_A 2edt_A 2edq_A 2edr_A

Probab=95.29  E-value=0.0082  Score=34.46  Aligned_cols=30  Identities=17%  Similarity=0.188  Sum_probs=26.1

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .||.|....+.+...+|..++|.|.+.+.|
T Consensus         7 ~pp~~~~~~~~~~v~~G~~v~l~C~~~~~p   36 (108)
T 2dm7_A            7 GPARFTQDLKTKEASEGATATLQCELSKVA   36 (108)
T ss_dssp             CCCCBCSCCBCCEEETTSCEEEEEEBSSSC
T ss_pred             CCCeeeecCCcEEEeCCCcEEEEEEeCCCC
Confidence            688888887788889999999999998764

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=95.27  E-value=0.016  Score=38.57  Aligned_cols=50  Identities=8%  Similarity=0.002  Sum_probs=34.9

Q ss_pred             hcCcCCCccc-----eeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEE-----VRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~p-----vs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+.+...+     .+..+.|.|.   .+|.|.+.... ....|..++|.|.+.. |.+
T Consensus       190 ~C~a~n~~g~~~~s~~s~~~~l~V~~~~~~p~i~~~~~~-~v~~G~~v~L~C~~~~-~~~  247 (316)
T 3vh8_G          190 RCYGSVTHTPYQLSAPSDPLDIVVTGPYEKPSLSAQPGP-KVQAGESVTLSCSSRS-SYD  247 (316)
T ss_dssp             EEEEECTTCTTBCCCCCCCEEEEEECSSCCCEEEEESCS-CCCTTSCCEEEEEESS-CCS
T ss_pred             EEEEecCCCCccccCCCCCEEEEecCCCCCCeEEeCCCC-eecCCCcEEEEEECCC-CCc
Confidence            3777766443     2666777775   57888887543 3478999999999974 443

>2k1m_A Myosin-binding protein C, cardiac-type; IG-I domain, cardiac muscle, hypertrophic cardiomyopathy, actin-binding, cell adhesion, disease mutation; NMR {Homo sapiens}

Probab=95.18  E-value=0.014  Score=33.09  Aligned_cols=31  Identities=10%  Similarity=0.014  Sum_probs=23.7

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|..+.+.+.+..|..++|.|.+ +.|.+.|
T Consensus         9 ~~~~~~~~~~~v~~G~~v~l~C~~-~~p~~~v   39 (95)
T 2k1m_A            9 SAFSKKPRSVEVAAGSPAVFEAET-ERAGVKV   39 (95)
T ss_dssp             CCCSBCCCCEEEETTSCEEEEEEC-SSSSCCC
T ss_pred             CeeEeCCCcEEEeCCCcEEEEEEe-CCCCCeE
Confidence            445554456777899999999999 7887765

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=95.18  E-value=0.02  Score=35.06  Aligned_cols=46  Identities=15%  Similarity=0.015  Sum_probs=31.7

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+..    ..+.|.|.+.   ..+.. .....|..++|.|.+.+.|.+.+
T Consensus        84 ~C~~~~~~----~~~~l~V~~~---~~~~~-~~v~~g~~~~l~C~~~~~p~~~v  129 (184)
T 2ny1_B           84 ICEVEDQK----EEVQLLVFGL---TANSD-THLLQGQSLTLTLESPPGSSPSV  129 (184)
T ss_dssp             EEEETTEE----EEEEEEEEEE---EESSC-SEEETTCCEEEEEECCTTCCCEE
T ss_pred             EEEEEcCC----CcEEEEEEEe---cCCCC-ceeecCCCEEEEEEcCCCCCCEE
Confidence            35555553    4677888863   33322 34478999999999999998764

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=95.18  E-value=0.053  Score=32.69  Aligned_cols=47  Identities=15%  Similarity=0.202  Sum_probs=34.1

Q ss_pred             ccceeeeEEEEeecCCeEEE-ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         23 KEEVRRRRRRNQKNLPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        23 ~~pvs~~I~L~V~ypPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +......+.+.+..+|.... ....+.+..|..+.|.|.+.+.|.|.|
T Consensus       103 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~g~p~p~i  150 (218)
T 4frw_A          103 AGSFQARLRLRVLVPPLPSLNPGPALEEGQGLTLAASCTAEGSPAPSV  150 (218)
T ss_dssp             TEEEEEEEEEEEEBCCCCEEEECSCEETTCCSEEEEEEEEEEBSCCEE
T ss_pred             CceeeeEEEEEEeeeccceeeeeeeeeeeeccccceeeeccCCcCceE
Confidence            33445555666666655544 456677788999999999999999865

>3rjd_A High affinity immunoglobulin gamma FC receptor I; immune system; HET: NAG MAN FUC P33; 2.65A {Homo sapiens}

Probab=95.16  E-value=0.015  Score=36.77  Aligned_cols=31  Identities=23%  Similarity=0.309  Sum_probs=27.9

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +|.|.+..+.+...+|+.++|.|.+.+.|.+
T Consensus         1 kP~i~~~p~~~~v~~G~~v~l~C~~~~~~~~   31 (262)
T 3rjd_A            1 KAVITLQPPWVSVFQEETVTLHCEVLHLPGS   31 (262)
T ss_dssp             CCEEEESSCCSEEETTCCEEEEEECSSCCCT
T ss_pred             CCeEecCCCcEEeeCCCeEEEEEECCCCCCC
Confidence            5889998888888899999999999999876

>3r06_A Anti-mouse CD3epsilon antibody 2C11 FAB light CHA; anti-CD3epsilon, T-cell receptor, signalling, IMMU; 2.50A {Cricetulus migratorius} PDB: 3r08_L 3ld8_B 3ldb_B*

Probab=95.15  E-value=0.029  Score=34.86  Aligned_cols=32  Identities=9%  Similarity=0.068  Sum_probs=26.4

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|..+.+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         2 ~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   33 (213)
T 3r06_A            2 IQMTQSPSSLPASLGDRVTINCQASQDISNYL   33 (213)
T ss_dssp             CCEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             CeeEeCCCEEEecCCCcEEEEEEeCCCcCceE
Confidence            56777666778899999999999999987654

>3o3u_N Maltose-binding periplasmic protein, advanced Gly END product-specific receptor; RAGE, AGER, scavenger receptor; HET: MLR; 1.50A {Escherichia coli} PDB: 3s59_A 3s58_A 3cjj_A 2l7u_A* 2e5e_A

Probab=95.13  E-value=0.032  Score=40.31  Aligned_cols=53  Identities=13%  Similarity=0.067  Sum_probs=36.8

Q ss_pred             hcCcCCCccce-eeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         16 EEEPEKDKEEV-RRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pv-s~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      .|.+.+..... +..+.|+|..   +|.|....+.+. ..+..+.|.|.+.+ +|.+.|
T Consensus       448 ~C~~~n~~~~~~~~~~~l~V~~~~~~p~i~~~~~~~~-~~~~~~~l~C~~~~~~P~~~i  505 (581)
T 3o3u_N          448 RCQAMNRNGKETKSNYRVRVYQIPGKPEIVDSASELT-AGVPNKVGTCVSEGSYPAGTL  505 (581)
T ss_dssp             EEEEECTTSCEEEEEEEEEEEBCCCCCEEESCCSEEC-TTSCEEEEEEEEEEEBSCCEE
T ss_pred             EEEEEcCCCceeEEEEEEEEEcCCCCCEEEcCCcccc-cCCceeEEEEECCCCCCCCeE
Confidence            37776665555 7889999988   566766665532 22344567999999 598765

>1jhl_L IGG1-kappa D11.15 FV (light chain); complex(antibody-antigen); 2.40A {Mus musculus} SCOP: b.1.1.1

Probab=95.10  E-value=0.03  Score=32.42  Aligned_cols=29  Identities=10%  Similarity=0.142  Sum_probs=22.6

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+...+.+.+|..++|.|.+.+.|.+.|
T Consensus         5 ~q~p~~~~~~~G~~v~L~C~~~~~~~~~v   33 (108)
T 1jhl_L            5 TQSPSYLVASPGETITINCRASKSISKSL   33 (108)
T ss_dssp             EEECSEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             eccCCeeEEcCCCCEEEEeEECCCCCceE
Confidence            33345677889999999999999886654

>4f80_A Butyrophilin subfamily 3 member A1; B7 superfamily, CD277, immune system; 1.94A {Homo sapiens} PDB: 4f9l_A* 4f9p_A 4f8t_A 4f8q_A

Probab=95.09  E-value=0.03  Score=35.47  Aligned_cols=26  Identities=19%  Similarity=0.148  Sum_probs=20.7

Q ss_pred             EecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         42 VERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        42 v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|..-|.+.+|..|+|.|.+.+.|.+
T Consensus         9 ~P~~pV~v~~G~~v~L~C~v~~~~~~   34 (226)
T 4f80_A            9 GPSGPILAMVGEDADLPCHLFPTMSA   34 (226)
T ss_dssp             CCSSCEEEETTSCEEEEEEEESCCCC
T ss_pred             CCCCCEEEEcCCcEEEEEEEECCCCC
Confidence            34455777899999999999887765

>2v5t_A NCAM2, N-CAM 2, neural cell adhesion molecule 2; phosphorylation, immunoglobulin domain, membrane, glycoprote adhesion, transmembrane; HET: NAG; 2.00A {Homo sapiens}

Probab=95.08  E-value=0.015  Score=34.97  Aligned_cols=33  Identities=21%  Similarity=0.248  Sum_probs=27.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.+....+-+...+|..++|.|.+.+.|.+.|
T Consensus         2 ~~~~~~~~~~~~v~~G~~v~l~C~~~~~p~~~v   34 (189)
T 2v5t_A            2 MLTFREVVSPQEFKQGEDAEVVCRVSSSPAPAV   34 (189)
T ss_dssp             CCEEEECCSSEEEETTSCEEECCEEECSSCCEE
T ss_pred             CceeeccCCCEEEeCCCcEEEEEEEcCCCCCEE
Confidence            566777766778889999999999999998754

>3bn9_D E2 FAB heavy chain; antibody-protease complex, protein-protein complex, enzyme- inhibitor complex, disease mutation, glycoprotein, hydrolase; 2.17A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kr3_H 2xtj_E

Probab=95.02  E-value=0.0075  Score=40.88  Aligned_cols=40  Identities=20%  Similarity=0.177  Sum_probs=22.8

Q ss_pred             eeEEEEeec----CCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQKN----LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~y----pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ..+.|.|..    +|.|.+..+......|..++|.|.+.++ |.+
T Consensus       120 ~~t~L~V~~~~~~~P~v~~~~p~~~~~~g~~v~L~C~~~g~~P~p  164 (257)
T 3bn9_D          120 QGTMVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFPEP  164 (257)
T ss_dssp             CCEEEEECSSCCBCCEECCCCC-----------CCCEEEEEBSSC
T ss_pred             CcEEEEecCCCCcCCcEEEecCcccccCCCcEEEEEEEeeEECCC
Confidence            456888875    7888876544445679999999999997 776

>2jll_A NCAM2, neural cell adhesion molecule 2; immunoglobulin domain, immunoglobulin superfamily, transmembrane, phosphoprotein, membrane, glycoprotein; HET: NAG; 2.30A {Homo sapiens} PDB: 2xyc_A* 2jlk_A* 2doc_A

Probab=95.02  E-value=0.026  Score=37.99  Aligned_cols=32  Identities=25%  Similarity=0.285  Sum_probs=26.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+.+. .+.+|+.++|.|.+.+.|.+.|
T Consensus         1 ~P~i~~~~~~-~~~~G~~v~l~C~~~g~p~p~v   32 (389)
T 2jll_A            1 QPHIIQLKNE-TTYENGQVTLVCDAEGEPIPEI   32 (389)
T ss_dssp             CCEEEECCCE-EEETTSEEEEEEEEECSSCCEE
T ss_pred             CCeEEecCce-EEeCCCeEEEEEEeecccCCeE
Confidence            6888886654 3466999999999999998865

>1epf_A NCAM, protein (neural cell adhesion molecule); immunoglobulin fold, glycoprotein; 1.85A {Rattus norvegicus} SCOP: b.1.1.4 b.1.1.4 PDB: 2ncm_A 3ncm_A

Probab=94.97  E-value=0.025  Score=34.30  Aligned_cols=32  Identities=16%  Similarity=0.272  Sum_probs=26.1

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeC-CCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEP-HAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P-~a~   68 (70)
                      |+.|.++.+.+...+|..++|.|.+.+.| .+.
T Consensus         2 p~~v~~~p~~~~v~~G~~v~l~C~~~~~~~~~~   34 (191)
T 1epf_A            2 VLQVDIVPSQGEISVGESKFFLCQVAGDAKDKD   34 (191)
T ss_dssp             -CCEEEESSSEEEETTCCEEEEEEECCCSCCCE
T ss_pred             ceEEEecCCCcEEcCCCCEEEEEECCCCCCCce
Confidence            56777777788889999999999999987 443

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=94.94  E-value=0.022  Score=36.49  Aligned_cols=48  Identities=4%  Similarity=-0.030  Sum_probs=30.5

Q ss_pred             cCcCCCcc-ceeeeEEEEeecC--------------------CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQKNL--------------------PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~yp--------------------PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |.+.+... .......|.|..+                    +.+..+ +.+.+.+|..++|.|.+.+.|
T Consensus        91 C~~~n~~~~~~~~~~~l~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~v~~G~~v~L~C~~~~~~  159 (250)
T 3esu_F           91 CQQGNTLPWTFGGGTKLEIRRGGGGSGGGGSGGGGSGGGGSEVQLQQS-GPELVKPGASVKISCKDSGYA  159 (250)
T ss_dssp             EEECSSSSCEECCCEEEEEC------------------------CEEC-CCEEECTTCCEEEEEECCSTT
T ss_pred             EEEeeCCCceECCCEEEEEECCCCcccccccccccccCcccceEEecC-CceEEcCCceEEEEEEecCCc
Confidence            66655432 2345567888774                    234444 445678999999999999876

>1wio_A CD4, T-cell surface glycoprotein CD4; immunoglobulin fold, transmembrane, MHC lipoprotein, polymorphism; 3.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1 b.1.1.3 b.1.1.3 PDB: 1wip_A 1wiq_A 3t0e_E

Probab=94.92  E-value=0.018  Score=39.01  Aligned_cols=40  Identities=8%  Similarity=0.075  Sum_probs=33.6

Q ss_pred             hcCcCCC--ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         16 EEEPEKD--KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        16 ~~~~~~~--~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .|.+.+.  ...+++.+.|.|.   .|          .|..++|.|.+.+.|.+.
T Consensus       271 ~C~a~n~~~~g~~~~~~~l~V~---~v----------~g~~~~l~C~~~g~p~p~  312 (363)
T 1wio_A          271 NLTLALEAKTGKLHQEVNLVVM---RA----------TQLQKNLTCEVWGPTSPK  312 (363)
T ss_dssp             EEEECBTTTTCCEEEEEEEEEE---EE----------CCCSSSEEEEEESSCCTT
T ss_pred             EEEEEEhhhcCeEEEEEeEEEE---Ee----------cCCCeeEEEEEccccCCC
Confidence            4888888  6688999999998   11          199999999999999887

>3ry4_A Low affinity immunoglobulin gamma FC region recep; FC receptor, CD32, immunoglobulin superfamily, low responder polymorphism, cell membrane; HET: NAG; 1.50A {Homo sapiens} PDB: 1fcg_A 3ry5_A 1h9v_A 3d5o_F* 3ry6_C* 2fcb_A

Probab=94.89  E-value=0.02  Score=34.38  Aligned_cols=30  Identities=17%  Similarity=0.377  Sum_probs=26.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +|.|.+..+.+....|..++|.|.+.+.|.
T Consensus         4 ~p~i~~~p~~~~v~~G~~v~l~C~~~~~p~   33 (170)
T 3ry4_A            4 KAVLKLEPPWINVLQEDSVTLTCQGARSPE   33 (170)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEESCCCSS
T ss_pred             CCEEEeCCCCeEEECCCcEEEEEEecCCCC
Confidence            578888888888889999999999999973

>1iga_A IGA1; immunoglobulin; NMR {Homo sapiens} PDB: 2esg_A 2qtj_A 3chn_A 1r70_B 3cm9_A

Probab=94.88  E-value=0.015  Score=41.28  Aligned_cols=51  Identities=14%  Similarity=0.101  Sum_probs=34.1

Q ss_pred             hcCcCCCcc-ceeeeEEEEee------------------cCCeEEEecceEEe-ccCCcEEEEEEEeeeCC
Q psy15736         16 EEEPEKDKE-EVRRRRRRNQK------------------NLPEIEVERSWVHS-GEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        16 ~~~~~~~~~-pvs~~I~L~V~------------------ypPeI~v~~~~Vha-~~G~~a~L~CiV~A~P~   66 (70)
                      .|.+.+... .+++.+.|+|.                  .+|.|.+..+.... .+|..++|.|.+.+.|.
T Consensus       206 ~C~a~n~~~~~~~~~v~l~V~~~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~~~~G~~v~L~C~~~g~~p  276 (475)
T 1iga_A          206 TCHVKHYTNPSQDVTVPCPVPSTPPTPSPSTPPTPSPSCCHPRLSLHRPALEDLLLGSEANLTCTLTGLRD  276 (475)
T ss_pred             EEEEEECCCCceeeeEecccccCcccccccccccCCCCCCCcEEEEcCCChHHhccCCceEEEEEEEcccC
Confidence            376666543 24566666563                  36777665544443 78999999999998754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=94.88  E-value=0.02  Score=37.29  Aligned_cols=51  Identities=12%  Similarity=0.050  Sum_probs=33.8

Q ss_pred             hcCcCCCc--cceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDK--EEVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~--~pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+..  ...+..+.|.|..   +|.|....+. ...+|..++|.|.+.+.|.+
T Consensus        80 ~C~a~n~~~~~~~s~~~~l~V~~~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~~  135 (218)
T 1uct_A           80 QCQYRIGHYRFRYSDTLELVVTGLYGKPFLSADRGL-VLMPGENISLTCSSAHIPFD  135 (218)
T ss_dssp             EEEEEETTTEEEECCCEEEEEECSSCCCEEEESSCS-EECTTCCCEEEEECSSSCCS
T ss_pred             EEEEEcCCCceeecCCEEEEEcCcccCCEEEeCCCC-ccCCCCCEEEEEeCCCCCCC
Confidence            36666542  3345667888864   7888765432 34689999999966555554

>3bn3_B ICAM-5, intercellular adhesion molecule 5, telencephalin; I domain, integrin, allosteric mobility, cell adhesi immune system; HET: NAG; 2.10A {Homo sapiens}

Probab=94.84  E-value=0.016  Score=39.56  Aligned_cols=48  Identities=15%  Similarity=0.095  Sum_probs=36.4

Q ss_pred             cCcCCCccceeeeEEEEeecCCeE---EEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPEI---EVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPeI---~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |...-.+....+.+.|.|.++|+.   ....+|  ..+|++.+|.|.|++...
T Consensus        68 C~~~c~~~~~~~~v~l~Vy~~P~~v~i~~~~~~--~~~G~~~tL~C~v~~~~P  118 (196)
T 3bn3_B           68 CFFRCARRTLQARGLIRTFQRPDRVELMPLPPW--QPVGENFTLSCRVPGAGP  118 (196)
T ss_dssp             EEEEETTEEEEEECEEEEEBCCCCCEECCCCSS--EETTSEEEEEEEETTCBC
T ss_pred             EEEECCCCceEEEEEEEEecCCCcCEEccCCcc--ccCCCcEEEEEEeCCccC
Confidence            555556788999999999998864   333344  467999999999998433

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=94.82  E-value=0.019  Score=37.37  Aligned_cols=51  Identities=18%  Similarity=0.139  Sum_probs=33.9

Q ss_pred             cCcCC--CccceeeeEEEEeec------CCeEEEecce-EEeccCCcEEEEEEEeeeCCC
Q psy15736         17 EEPEK--DKEEVRRRRRRNQKN------LPEIEVERSW-VHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~--~~~pvs~~I~L~V~y------pPeI~v~~~~-Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.+.+  ..........|.|.-      +|.|.+..+- .....|..++|.|.+.++|.+
T Consensus       117 C~~~~~~~~~~~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~p~  176 (268)
T 3pl6_D          117 CATSALGDTQYFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPD  176 (268)
T ss_dssp             EEEESSSSSCEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSS
T ss_pred             EEEecCCCceeeCCcEEEEEecCcccccCCceEEeCCCcccccCCCceEEEEEECcccCC
Confidence            66554  333444566777765      8888775332 223459999999999997765

>1pd6_A Cardiac MYBP-C;, myosin-binding protein C, cardiac-type, domain C2; IG domain, structural protein; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=94.82  E-value=0.02  Score=33.70  Aligned_cols=34  Identities=15%  Similarity=0.190  Sum_probs=25.8

Q ss_pred             ecCCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..+|.+..+ .+.+.+.+|..++|.|.+ +.|.+.|
T Consensus        13 ~~~p~f~~~~~~~~~v~~G~~v~L~C~~-~~p~~~v   47 (104)
T 1pd6_A           13 KKSTAFQKKLEPAYQVSKGHKIRLTVEL-ADHDAEV   47 (104)
T ss_dssp             STTSSCSEECCSEEEEETTSCEEEEEEC-SSSSSCC
T ss_pred             cCCCEEEEcCCCcEEEecCCCEEEEEEE-cCCCCEE
Confidence            346666555 344778899999999999 7888765

>1ccz_A Protein (CD58); LFA-3, glycoprotein; HET: NAG; 1.80A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1ci5_A 1qa9_B

Probab=94.80  E-value=0.028  Score=35.40  Aligned_cols=44  Identities=23%  Similarity=0.165  Sum_probs=31.0

Q ss_pred             hcCcCCCccceeeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+...  ++.+.|+|.-+   |.|....+        ..+|.|.+.+.|.+.+
T Consensus        76 ~C~~~n~~~--~~~~~L~V~~~~~~p~i~~~~~--------~~~L~C~~~~~p~p~i  122 (171)
T 1ccz_A           76 EMESPNITD--TMKFFLYVLEMVSKPMIYWECS--------NATLTCEVLEGTDVEL  122 (171)
T ss_dssp             EEECTTCCS--CEEEEEEEECCCCCCEEEEETT--------TTEEEEECSSCSSCEE
T ss_pred             EEEEeCCCC--cEEEEEEEECcCCCCEEEEecC--------CcEEEEEeCCCCCcEE
Confidence            466665544  78899999876   55554332        2489999999998764

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=94.79  E-value=0.047  Score=34.24  Aligned_cols=38  Identities=11%  Similarity=0.037  Sum_probs=27.7

Q ss_pred             eeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         26 VRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        26 vs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+..+.|.|..   +|.|.+..+. ...+|..++|.|.+.+.
T Consensus        94 ~s~~~~l~V~~~~~~p~i~~~p~~-~v~~G~~v~L~C~~~~~  134 (201)
T 1nkr_A           94 PSDPLDIVIIGLYEKPSLSAQPGP-TVLAGENVTLSCSSRSS  134 (201)
T ss_dssp             CCCCEEEEEECSSCCCEEEEESCS-EECTTCEEEEEEEESSC
T ss_pred             CCCCEEEEeeccCCCCceecCCCC-ccCCCCeEEEEEeCCCC
Confidence            35556677754   5899887552 44789999999998863

>2q20_A VK1 O18/O8 germline light chain variable domain; Al, light chain amyloidosis, amyloid, immunoglobulin, protein fibril; 1.30A {Homo sapiens} PDB: 2kqm_A 3cdf_A 3cdc_A 2kqn_A 3cdy_A 2q1e_A 3dvi_A 1igm_L 1bww_A 1b0w_A 1bre_A 1qp1_A 3dvf_A 1rei_A 1wtl_A 1ar2_A 1fgv_L 2bx5_A 2uzi_L* 1bvk_A ...

Probab=94.76  E-value=0.044  Score=31.99  Aligned_cols=31  Identities=10%  Similarity=0.141  Sum_probs=23.5

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         5 ~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v   35 (109)
T 2q20_A            5 QMTQSPSSLSASVGDRVTITCQASQDISNYL   35 (109)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             cEEeeCCEEEecCCCcEEEEEeeccCCCCcE
Confidence            4445455678899999999999998875543

>2yuz_A Myosin-binding protein C, SLOW-type; immunoglobulin domain, SLOW-type myosin-binding protein C, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=94.68  E-value=0.011  Score=34.69  Aligned_cols=31  Identities=16%  Similarity=0.013  Sum_probs=25.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.|..+.+-+...+|+.+.|.|.+  .|.+.|
T Consensus         7 p~~~~~~~~~~~v~~G~~v~l~C~v--~p~p~v   37 (100)
T 2yuz_A            7 GLKILTPLTDQTVNLGKEICLKCEI--SENIPG   37 (100)
T ss_dssp             CCCCSBCCCCEEEETTSCCCEEEEC--SSCCCE
T ss_pred             CCEEeccCCceEEcCCCCEEEEEEe--CCCCeE
Confidence            6677766667788899999999999  787764

>3m8o_H Immunoglobulin A1 heavy chain; immunoglobulin fold, immune system; 1.55A {Homo sapiens} PDB: 3qnx_B 3qny_B

Probab=94.68  E-value=0.057  Score=34.10  Aligned_cols=49  Identities=10%  Similarity=0.050  Sum_probs=32.0

Q ss_pred             cCcCCCc--cceeeeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEee-eCC
Q psy15736         17 EEPEKDK--EEVRRRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPH   66 (70)
Q Consensus        17 ~~~~~~~--~pvs~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~   66 (70)
                      |...+..  ......+.|.|.    .+|.|....+... ..|..++|.|.+.+ .|.
T Consensus        98 C~~~~~~~~~~~~~~~~l~V~~~~~~~p~v~~~~~~~~-~~g~~v~L~C~~~~~~P~  153 (221)
T 3m8o_H           98 CVIRGDVYNRQWGQGTLVTVSSASPTSPKVFPLSLCST-QPDGNVVIACLVQGFFPQ  153 (221)
T ss_dssp             EEEESCTTCCCBBCCEEEEECSCCCBCCEEEEEECCSC-CCTTEEEEEEEEEEEBSS
T ss_pred             EEEECCChhheECCCEEEEEecCCCCCCeEEEecCccc-ccCCCEEEEEEEEeeECC
Confidence            5555442  234455677775    6788873322222 68999999999999 665

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=94.67  E-value=0.035  Score=36.21  Aligned_cols=29  Identities=10%  Similarity=0.059  Sum_probs=24.1

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+|.|....+.+.+.+|..++|.|.+.+.
T Consensus       136 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~  164 (256)
T 3tf7_C          136 SEAAVTQSPRNKVTVTGENVTLSCRQTNS  164 (256)
T ss_dssp             --CCEEESCSEEEEETTCCEEECEEECSC
T ss_pred             CccEEEecCCEEEEeCCCcEEEEEEcCCC
Confidence            38889888888888899999999999865

>3sgj_C Human FCG3A receptor; receptor complex, FC receptor, antibody, immune system; HET: NAG BMA MAN FUC; 2.20A {Homo sapiens} PDB: 3sgk_C*

Probab=94.64  E-value=0.025  Score=36.26  Aligned_cols=33  Identities=18%  Similarity=0.224  Sum_probs=28.6

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      -+|.|.+..+++...+|..++|.|.+.+.|.+.
T Consensus         6 p~p~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~   38 (204)
T 3sgj_C            6 PKAVVFLEPQWYRVLEKDSVTLKCQGAYSPEDQ   38 (204)
T ss_dssp             CBCEEEEESCCSEEETTCCEEEEEECCSSSSCC
T ss_pred             CCCeEEEcCCCeEEECCCCEEEEEcCCCCCCCc
Confidence            468888888878888999999999999998764

>3ojm_B Fibroblast growth factor receptor 2; beta trefoil motif, immunoglobulin-like domain, growth facto factor receptor, extracellular; 2.10A {Homo sapiens} PDB: 1nun_B* 3oj2_C 2fdb_P 1iil_E 1ev2_E 1e0o_B* 1ii4_E 1djs_A 3ojv_C* 1cvs_C 1fq9_C* 1evt_C

Probab=94.62  E-value=0.011  Score=36.69  Aligned_cols=36  Identities=11%  Similarity=0.110  Sum_probs=27.5

Q ss_pred             eecCCeEEEec----ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVER----SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~----~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ...+|.+..+.    ..+...+|..++|.|.+.+.|.+.|
T Consensus        12 ~~~~P~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~p~~~v   51 (231)
T 3ojm_B           12 NKRAPYWTNTEKMEKRLHAVPAANTVKFRCPAGGNPMPTM   51 (231)
T ss_dssp             -CEEEEESCGGGGCCSCEEEETTSCEEEECCEEEESCCEE
T ss_pred             CccCCccccccccCceeEEEccCCCEEEEEecccCCCCeE
Confidence            34566665554    6777789999999999999998764

>1itb_B Type 1 interleukin-1 receptor; immunoglobulin fold, transmembrane, glycoprotein, signal, complex (immunoglobulin/receptor); 2.50A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 b.1.1.4 PDB: 1ira_Y* 4dep_B* 1g0y_R

Probab=94.60  E-value=0.0091  Score=39.23  Aligned_cols=54  Identities=11%  Similarity=-0.001  Sum_probs=37.0

Q ss_pred             hcCcCCCccceeeeEEEEe-ecCCeEEEecc---eEEeccCCcEEEEEEE------eeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQ-KNLPEIEVERS---WVHSGEGYEAQLVCIV------HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V-~ypPeI~v~~~---~Vha~~G~~a~L~CiV------~A~P~a~V   69 (70)
                      .|.+.+........+.|.| .++|.+.....   ......|..++|.|.+      .+.|.+.|
T Consensus        78 ~C~a~n~~g~~~~~~~v~v~~~~p~~~~~~~~~~~~~~~~g~~v~l~C~~~~~~~~~g~p~~~i  141 (315)
T 1itb_B           78 YCVVRNSSYCLRIKISAKFVENEPNLCYNAQAIFKQKLPVAGDGGLVCPYMEFFKNENNELPKL  141 (315)
T ss_dssp             EECCCSSSCCCCEECCCEEECCCTTSSSCGGGEEEEEEETTSCEEEECSSCTTTCTTTTCCCCC
T ss_pred             EEEEeCCceEEEEEEEEEEeCCCCCcccccccccceEEecCCCeEEEEecccccccCCCCCCEE
Confidence            4778777666666666663 46676643321   2345679999999999      89998865

>3vh8_G Killer cell immunoglobulin-like receptor 3DL1; immunoglobulin fold, natural killer cell receptor, immune SY; HET: NAG; 1.80A {Homo sapiens} PDB: 1im9_D

Probab=94.53  E-value=0.072  Score=35.35  Aligned_cols=41  Identities=10%  Similarity=-0.029  Sum_probs=29.9

Q ss_pred             cceeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         24 EEVRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        24 ~pvs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ...+..+.|.|.+   +|.|......+ ..+|..++|.|.+...|
T Consensus       103 ~~~s~~~~l~V~~~~~~p~~~~~~~~~-v~~G~~v~L~C~~~~~~  146 (316)
T 3vh8_G          103 SAPSNPVVIMVTGNHRKPSLLAHPGPL-VKSGERVILQCWSDIMF  146 (316)
T ss_dssp             CCCCCCEEEEEECSSCCCEEEEESCSE-EETTCCEEEEEEESSCC
T ss_pred             ecCCCcEEEEEecCCCCCeEEecCCCc-cCCCCeEEEEEcCCCCC
Confidence            3456677777754   57888776555 57899999999996543

>2gi7_A GPVI protein; IG-like domains, blood clotting, cell adhesion; 2.40A {Homo sapiens}

Probab=94.48  E-value=0.031  Score=34.74  Aligned_cols=34  Identities=12%  Similarity=-0.079  Sum_probs=27.0

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+..+|.|.+..+. ...+|..++|.|.+.+ |.+.
T Consensus         4 ~~~~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~~   37 (184)
T 2gi7_A            4 GPLPKPSLQALPSS-LVPLEKPVTLRCQGPP-GVDL   37 (184)
T ss_dssp             CCBCCCEEEEESCS-EEETTCCEEEEEECST-TCSE
T ss_pred             CCCCCCeEEeCCCc-cccCCCcEEEEEeCCC-CCCE
Confidence            35678999998775 5688999999999887 5443

>1f2q_A High affinity immunoglobulin epsilon receptor ALP subunit; immunoglobulin fold, glycoprotein, IGE-binding Pro immune system; HET: NAG MAN; 2.40A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1j86_A* 1rpq_A* 2y7q_A* 1f6a_A* 1j88_A* 1j89_A* 1j87_A*

Probab=94.41  E-value=0.045  Score=33.41  Aligned_cols=50  Identities=8%  Similarity=-0.197  Sum_probs=34.3

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEe-eeCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVH-AEPHAD   68 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~   68 (70)
                      .|.+.+..  .+..+.|.|..+|.+....+ .....|..++|.|.+. +.|.+.
T Consensus        67 ~C~~~~~~--~s~~~~l~V~~~~~~~~~~~-~~~~~g~~~~l~C~~~~~~p~~~  117 (176)
T 1f2q_A           67 KCQHQQVN--ESEPVYLEVFSDWLLLQASA-EVVMEGQPLFLRCHGWRNWDVYK  117 (176)
T ss_dssp             EEECTTSS--CCCCEEEEEECSSEEEEESC-SEEETTSCEEEEEEEGGGCCEEE
T ss_pred             EEEcCCcc--ccccEEEEEeCcceeecCCc-ceeeCCCCEEEEEEecCCCCceE
Confidence            36666544  35678888887776655443 3456899999999995 455443

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=94.40  E-value=0.029  Score=35.81  Aligned_cols=43  Identities=19%  Similarity=0.113  Sum_probs=30.3

Q ss_pred             cceeeeEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEeeeCC
Q psy15736         24 EEVRRRRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        24 ~pvs~~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ......+.|.|.      .+|.|.+..+- .....|..++|.|.+.++|.
T Consensus       104 ~~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~l~C~~~g~~p  153 (245)
T 4ei6_B          104 QFFGPGTRLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  153 (245)
T ss_dssp             CEECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBS
T ss_pred             EEEcCCcEEEEecccCCCCCceEEEeCCCcccccCCCceEEEEEEeeEeC
Confidence            344566778887      78988875432 22345999999999999654

>3k0w_A Mucosa-associated lymphoid tissue lymphoma translocation protein 1, isoform 2; hydrolase, immunoglobulin domain, nucleus, protease; 2.80A {Homo sapiens}

Probab=94.35  E-value=0.024  Score=35.92  Aligned_cols=35  Identities=17%  Similarity=0.145  Sum_probs=28.1

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ...|.|.+.-+.+...+|..+.|.|.+.+.|.+.|
T Consensus        16 ~~~~~i~~~p~~~~v~~G~~v~L~C~~~~~p~~~v   50 (218)
T 3k0w_A           16 PRGSKITVNPESKAVLAGQFVKLCCRATGHPFVQY   50 (218)
T ss_dssp             ---CCEEECCCCEEEETTSBEEEECEETTTTSSEE
T ss_pred             CCCCEEEECCCCeEEeCCCcEEEEeeecCCCCCEE
Confidence            45677888878888899999999999999998754

>1nbq_A JAM, junctional adhesion molecule 1, PAM-1; reovirus receptor, tight junction formation, immunoglobulin superfamily, immune system; 2.90A {Homo sapiens} SCOP: b.1.1.1 b.1.1.4 PDB: 3eoy_G

Probab=94.30  E-value=0.014  Score=35.51  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.|..+.+.+...+|..+.|.|.+.+.|.+.|
T Consensus         4 ~~~i~~~~~~~~v~~G~~v~L~C~~~~~p~~~v   36 (209)
T 1nbq_A            4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV   36 (209)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEE
T ss_pred             eEEEEcCCCceEEEcCCCEEEEEEEeCCCCcEE
Confidence            567777777888889999999999999887654

>2cpc_A KIAA0657 protein; immunoglobulin domain, IG domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=94.26  E-value=0.054  Score=31.04  Aligned_cols=22  Identities=23%  Similarity=0.252  Sum_probs=18.6

Q ss_pred             EEeccCCcEEEEEEEeeeCCCCC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.+..|..+.|.|.+. .|.+.|
T Consensus        23 ~~~~~G~~v~L~C~~~-~p~~~v   44 (113)
T 2cpc_A           23 VAAVRLERVVLTCELC-RPWAEV   44 (113)
T ss_dssp             EEEETTCCEEEEEEES-CTTCCC
T ss_pred             EEEEcCCeEEEEEEec-CCCCeE
Confidence            6678899999999995 787765

>3mj8_L Stimulatory hamster antibody HL4E10 FAB light CHA; hamster IGG, immune system; 2.94A {Cricetulus migratorius} PDB: 3mj9_L*

Probab=94.26  E-value=0.025  Score=35.11  Aligned_cols=31  Identities=13%  Similarity=0.078  Sum_probs=24.2

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|..+. .+.+.+|..++|.|.+.+.|.+.|
T Consensus         2 ~~v~~~~-~~~v~~G~~v~L~C~~~~~~~~~v   32 (213)
T 3mj8_L            2 YTLTQPP-LVSVALGQKATITCSGDKLSDVYV   32 (213)
T ss_dssp             CCBBCCS-EEEEETTSCEEEEEECSSTTTSCE
T ss_pred             eeEEeCC-cEEEeCCCCEEEEEEcCCCCCceE
Confidence            4455555 667788999999999998887764

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=94.24  E-value=0.1  Score=34.55  Aligned_cols=50  Identities=10%  Similarity=0.054  Sum_probs=32.6

Q ss_pred             cCcCCCcc-ceeeeEEEEeecCC------------------eEEEe-cceEEeccCCcEEEEEEEeeeCC
Q psy15736         17 EEPEKDKE-EVRRRRRRNQKNLP------------------EIEVE-RSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        17 ~~~~~~~~-pvs~~I~L~V~ypP------------------eI~v~-~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |.+.+... .....+.|.|..+|                  .+.+. .+.+.+.+|..++|.|.+.+.|.
T Consensus        98 C~~~~~~~~~~~~~~~L~V~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~v~~G~~v~L~C~~~~~~~  167 (264)
T 2gjj_A           98 CQQYSNYPWTFGGGTRLEIKRGGGGSGGGGSGGGGSGGGGSEVQLQQSGPEVVKTGASVKISCKASGYSF  167 (264)
T ss_dssp             EEECSSSSCEECCCEEEEEECC-------------------CCEEEECCCEEECTTCCEEEEEEEESSCG
T ss_pred             EEEecCCccEecCCEEEEEEcCCcccccccccccccccccCcEEEeCCCCEEEcCCCcEEEEEEEeCCcc
Confidence            66655432 23456789998874                  33332 22345789999999999998874

>1z9m_A GAPA225; nectin-like, IG-like domain, V domain, cell adhesion; 2.40A {Homo sapiens}

Probab=94.24  E-value=0.021  Score=34.75  Aligned_cols=42  Identities=12%  Similarity=-0.026  Sum_probs=24.8

Q ss_pred             eeEEEEeecCCeE-EEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         28 RRRRRNQKNLPEI-EVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        28 ~~I~L~V~ypPeI-~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ......+.+.|.. ......+.+..|..++|.|.+.+.|.+.|
T Consensus        28 ~~~~~~~~~~~~~~~~~p~~~~v~~G~~v~L~C~~~~~~~~~i   70 (145)
T 1z9m_A           28 DKAMADINLSQDDSQPWTSDETVVAGGTVVLKCQVKDHEDSSL   70 (145)
T ss_dssp             ----------CCTTCCBCCCEEEETTSCEEEEEECSCCTTCCE
T ss_pred             HhHhhhheecccceecCCceEEEEcCCCEEEEEEEcCCCCcEE
Confidence            3344444444433 45556678899999999999999987654

>2v5y_A Receptor-type tyrosine-protein phosphatase MU; membrane, hydrolase, glycoprotein, receptor protei tyrosine phosphatase, cell adhesion; HET: NAG; 3.10A {Homo sapiens}

Probab=94.17  E-value=0.083  Score=39.91  Aligned_cols=46  Identities=13%  Similarity=0.005  Sum_probs=33.9

Q ss_pred             ccceeeeEEEEee---cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         23 KEEVRRRRRRNQK---NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        23 ~~pvs~~I~L~V~---ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.-+...+.+.+.   .||.+..++ -+.+..|..++|.|.+.+.|.+.|
T Consensus       148 G~~~~~~v~~~~~~~~~~p~~~~~~-~~~v~~G~~v~l~C~~~g~P~p~i  196 (731)
T 2v5y_A          148 GYLAIDEVKVLGHPCTRTPHFLRIQ-NVEVNAGQFATFQCSAIGRTVAGD  196 (731)
T ss_dssp             CEEEECCBEEESSCCSSSCEECCCC-CEEEETTSCEEEEEEEESCCCTTC
T ss_pred             eEEEEeeEEeeeccccccccccccc-ceEEeCCCcEEEEEEeCCCCCCce
Confidence            3344445554443   688887554 577789999999999999999875

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=94.16  E-value=0.041  Score=35.13  Aligned_cols=43  Identities=16%  Similarity=0.207  Sum_probs=30.0

Q ss_pred             ceeeeEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEee-eCCC
Q psy15736         25 EVRRRRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        25 pvs~~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      .......|.|.      .+|.|.+..+. .....|..++|.|.+.+ .|.+
T Consensus       103 ~~~~~~~l~V~~~~~~~~~p~~~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  153 (240)
T 3q5y_A          103 YFGPGTRLTVLEDLRNVTPPKVSLFEPSKAEIANKQKATLVCLARGFFPDH  153 (240)
T ss_dssp             EECCCEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             EEcCCEEEEEeccccCCCCCeeEEeCCchhhcccCCceEEEEEEeeEECCC
Confidence            34456677776      88998875432 23346999999999999 4544

>3mjg_X Beta-type platelet-derived growth factor receptor; protein-protein complex, growth factor-receptor complex, TRA hormone complex; HET: NDG NAG; 2.30A {Homo sapiens}

Probab=94.09  E-value=0.023  Score=36.79  Aligned_cols=53  Identities=13%  Similarity=0.035  Sum_probs=33.9

Q ss_pred             hcCcCCCccc---eeeeEEEEeecCCeEEEec--c--eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEE---VRRRRRRNQKNLPEIEVER--S--WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~p---vs~~I~L~V~ypPeI~v~~--~--~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+.+....   .+..+.|.|..|+...++.  .  .+....|..+.|.|.+. .|.+.+
T Consensus        67 ~C~a~n~~g~~~~~~~~~~v~v~~p~~~~~~~~~~~~~~~v~~G~~v~l~C~~~-~p~~~v  126 (289)
T 3mjg_X           67 FCTHNDSRGLETDERKRLYIFVPDPTVGFLPNDAEELFIFLTEITEITIPCRVT-DPQLVV  126 (289)
T ss_dssp             EEECCC------CCCEEEEEECCCTTCCBCCCCHHHHEEEESSCCCEEECCCBS-CTTSCE
T ss_pred             EEEEcccCCCCcCcEEeEEEEEECCCcCcccCCCCcceEEeecCCeEEEEeEcC-CCCceE
Confidence            4667665533   5677788887554433321  1  26678999999999999 777654

>3u2s_H PG9 heavy chain; greek KEY, immunoglobulin, immune recognition, immune system; HET: PCA TYS BU3 NAG BMA MAN; 1.80A {Homo sapiens} PDB: 3u4e_H* 3u36_H 3mug_B* 3lrs_H* 3mme_H* 2qsc_H*

Probab=94.06  E-value=0.11  Score=34.53  Aligned_cols=39  Identities=18%  Similarity=0.091  Sum_probs=25.8

Q ss_pred             eeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ....|.|.    .+|.|.+..+......|..++|.|.+.++++
T Consensus       128 ~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~L~C~~~~~~P  170 (248)
T 3u2s_H          128 KGTTVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  170 (248)
T ss_dssp             CCEEEEECSCCCBCCEEEEECCC------CEEEEEEEEEEEBS
T ss_pred             CCEEEEEcccCCCCCEEEEeCCCccccCCCcEEEEEEEeeEEC
Confidence            44567776    8899997666555566999999999999653

>3rbs_A Myomesin-1; immunoglobulin C-SET domain, contractIle protein; 1.85A {Homo sapiens}

Probab=94.05  E-value=0.055  Score=35.04  Aligned_cols=32  Identities=16%  Similarity=0.009  Sum_probs=26.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeee-CCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAE-PHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a~V   69 (70)
                      +|.+..+.+ ....+|..++|.|.+.+. |.+.|
T Consensus       117 ~P~~~~~~~-~~v~~g~~v~l~C~v~g~~P~p~i  149 (207)
T 3rbs_A          117 GPHFVEYLS-WEVTGECNVLLKCKVANIKKETHI  149 (207)
T ss_dssp             SSEEEEEEE-EEEETTTEEEEEEEEESCCTTCEE
T ss_pred             CCceEecCC-cEEcCCCcEEEEEEEeCCCCCCEE
Confidence            788776654 556789999999999999 88865

>2lu7_A Obscurin-like protein 1; structural genomics, northeast structural genomics consortiu PSI-biology, protein structure initiative, structural prote; NMR {Homo sapiens}

Probab=94.05  E-value=0.023  Score=32.84  Aligned_cols=24  Identities=25%  Similarity=0.304  Sum_probs=20.5

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-|.+.+|..++|.|.|.+ |.|.|
T Consensus         4 t~v~~~~G~~v~l~C~vs~-p~p~v   27 (84)
T 2lu7_A            4 TRVRSTPGGDLELVVHLSG-PGGPV   27 (84)
T ss_dssp             CCEEECTTSCEEEECCCSC-CSTTC
T ss_pred             eEEEEecCCCEEEEEEECC-CCcEE
Confidence            4578899999999999966 88876

>3s96_B 3B5H10 FAB light chain; huntingtin, immune system; 1.90A {Mus musculus} PDB: 2qhr_L 3ffd_B 4dcq_A

Probab=94.05  E-value=0.053  Score=33.63  Aligned_cols=31  Identities=13%  Similarity=0.141  Sum_probs=24.5

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeee-CCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAE-PHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a~V   69 (70)
                      |.|..+. .+.+.+|..++|.|.+.+. |.+.|
T Consensus         2 ~~v~~~p-~~~v~~G~~v~L~C~~~~~~~~~~v   33 (218)
T 3s96_B            2 LVLTQSS-SASFSLGASAKLTCTLNSQHSTYTI   33 (218)
T ss_dssp             CSEECCS-EEEEETTSCEEEEEEECGGGTTCCE
T ss_pred             CeEEeCC-cEEECCCCcEEEEEECCCCCCCcEE
Confidence            4555555 6778899999999999998 77654

>3n9g_H FAB fragment of MAB CR4354, heavy chain; human neutralizing antibody, immun anti-WEST NIle virus; 1.43A {Homo sapiens} PDB: 3iyw_H 3qeh_A 3sqo_H 4hk0_A 4hk3_J 4hkx_A* 3u0t_D 3c08_H 3lmj_H 3lqa_H* 3c09_H* 4dn3_H 3pp4_H 3pp3_H 4hkb_J 2jb5_H* 2jb6_B* 2eh7_H 2eh8_H 3jwd_H* ...

Probab=94.03  E-value=0.11  Score=33.35  Aligned_cols=39  Identities=18%  Similarity=0.064  Sum_probs=29.5

Q ss_pred             eeEEEEe----ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQ----KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V----~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ....|+|    ..+|.|.+..+......|..++|.|.+.+++.
T Consensus       115 ~~~~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~L~C~~~~~~P  157 (230)
T 3n9g_H          115 QGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  157 (230)
T ss_dssp             CCEEEEECSSCCBCCEEEEECCCCCCCTTCEEEEEEEEEEEBS
T ss_pred             CCEEEEEEecCCCCCEEEecCCCccccCCCCEEEEEEEEeEEC
Confidence            4456777    47888887655555568999999999999754

>3fku_X Neutralizing antibody F10; influenza, hemagglutinin, SCFV, F membrane, envelope protein, fusion protein, membrane, trans virion; HET: NAG BMA; 3.20A {Homo sapiens}

Probab=94.02  E-value=0.054  Score=36.23  Aligned_cols=37  Identities=19%  Similarity=0.185  Sum_probs=30.5

Q ss_pred             eeeeEEEEeec---------------CCeEEEecceEEeccCCcEEEEEEEee
Q psy15736         26 VRRRRRRNQKN---------------LPEIEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        26 vs~~I~L~V~y---------------pPeI~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      ......|.|..               +|.|..+.+ +.+.+|..++|.|.+.+
T Consensus       114 ~~~~~~L~V~~~~~~~~~~~~~~~~~~~~v~~~p~-~~v~~G~~v~L~C~~~~  165 (280)
T 3fku_X          114 WGQGTLVTVSSGGGGSGGGGSGGGGIQPGLTQPPS-VSKGLRQTATLTCTGNS  165 (280)
T ss_dssp             ECCCCEEEECC--------------CCCSBBCCSE-EEECTTCCEEEEEECCC
T ss_pred             ECCCEEEEEcCCCCccCCCCCCceEeeeEEEeCCc-EEEecCCCEEEEEEecC
Confidence            44567788877               777877766 88899999999999998

>1qfw_M FV, antibody (anti beta subunit) (light chain); glycoprotein hormone; HET: NAG; 3.50A {Mus musculus} SCOP: b.1.1.1

Probab=93.94  E-value=0.068  Score=31.08  Aligned_cols=29  Identities=10%  Similarity=0.090  Sum_probs=22.0

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |..+.+.+.+.+|..++|.|.+.+.|.+.
T Consensus         4 v~q~p~~~~v~~G~~v~L~C~~~~~~~~~   32 (108)
T 1qfw_M            4 LTQSPKSMSMSVGERVTLSCKASETVDSF   32 (108)
T ss_dssp             EEEECSCEECCTTCCEEEEEEESSCCCSC
T ss_pred             EEEeCCeEEEcCCCCEEEEeeeCCCCCcE
Confidence            33444567889999999999999887543

>1vca_A VCAM-D1,2, human vascular cell adhesion molecule-1; immunoglobulin superfamily, integrin-binding, cell adhesion protein; 1.80A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4 PDB: 1ij9_A 1vsc_A

Probab=93.93  E-value=0.066  Score=34.20  Aligned_cols=24  Identities=13%  Similarity=-0.007  Sum_probs=19.5

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+...+|..++|.|.+.+.|.+.|
T Consensus        10 ~~~~~~G~~v~L~C~~~g~P~p~i   33 (202)
T 1vca_A           10 RYLAQIGDSVSLTCSTTGCESPFF   33 (202)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEE
T ss_pred             cEEEcCCCcEEEEEeecCCCCCeE
Confidence            344458999999999999998764

>4fom_A Poliovirus receptor-related protein 3; immunoglobulin-like domain, IG domain, cell adhesion; HET: NAG BMA MAN FUC; 3.93A {Homo sapiens}

Probab=93.87  E-value=0.099  Score=34.21  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=39.0

Q ss_pred             hcCcCCC-ccceeeeEEEEeecCCeEEEe--cceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         16 EEEPEKD-KEEVRRRRRRNQKNLPEIEVE--RSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~-~~pvs~~I~L~V~ypPeI~v~--~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      .|.+.+. +...+..+.|.|..+|.+..-  ...+....|..+.|.|.+ .+.|.+.|
T Consensus        90 ~C~a~n~~~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~~l~C~~~~g~P~~~i  147 (308)
T 4fom_A           90 ICKAVTFPLGNAQSSTTVTVLVEPTVSLIKGPDSLIDGGNETVAAICIAATGKPVAHI  147 (308)
T ss_dssp             EEEEEETTTEEEEEEEEEEEEBCCEEEEEECSSCCCTTCSCEEEEEEEEEEEBSCCEE
T ss_pred             EEEEeeCCCcceeeeeEEEeeeccccccccccceeEEcCCceEEEEEEecCCcCCceE
Confidence            3666553 556778888999888876543  334445778999999975 68998765

>3mlr_H Human monoclonal anti-HIV-1 GP120 V3 antibody 255 heavy chain; human monoclonal antibody, FAB, third variable antibody-antigen interaction; 1.80A {Homo sapiens} PDB: 3mls_H 3mlt_H 3mlu_H 3mlv_H

Probab=93.84  E-value=0.16  Score=32.77  Aligned_cols=39  Identities=18%  Similarity=0.035  Sum_probs=29.4

Q ss_pred             eeEEEEe----ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQ----KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V----~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ....|.|    ..+|.|.+..+......|..++|.|.+.++++
T Consensus       116 ~~t~l~V~~~~~~~P~i~~~~~~~~~~~g~~~~l~C~~~~~~p  158 (226)
T 3mlr_H          116 QGTMILVSSGTTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  158 (226)
T ss_dssp             CCEEEEECCCCCBCCEEEEEEEEECSTTSSEEEEEEEEEEEBS
T ss_pred             CccEEeeccCCCCCCcEEEecCcccccCCCCEEEEEEEEEEEC
Confidence            3446666    57888987655555668999999999999754

>3d9a_L Light chain of hyhel10 antibody fragment (FAB); lysozyme, antigen, allergen, antimic bacteriolytic enzyme, glycosidase, hydrolase; 1.20A {Mus musculus} PDB: 3hfm_L 1xgp_A 1xgq_A 1xgr_A 1xgt_A 1dqq_A 1dqm_L 1dqj_A 1nby_A 1nbz_A 1ndg_A 1ndm_A 1xgu_A 1fh5_L 1bm3_L 1opg_L 1mlb_A 1mlc_A 1rih_L 1p2c_A ...

Probab=93.81  E-value=0.079  Score=32.81  Aligned_cols=30  Identities=10%  Similarity=0.118  Sum_probs=23.5

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   33 (213)
T 3d9a_L            4 LTQSPATLSVTPGNSVSLSCRASQSIGNNL   33 (213)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             EEeCCccEEEeCCCcEEEEEECCCCCCCCE
Confidence            344445677789999999999999987754

>2e27_L Anti-ciguatoxin antibody, light chain; immunoglobulin fold, immune system; HET: AB0; 1.70A {Mus musculus} PDB: 3iy1_A

Probab=93.81  E-value=0.085  Score=31.74  Aligned_cols=29  Identities=10%  Similarity=0.202  Sum_probs=22.4

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |....+.+.+.+|..++|.|.+.+.|.+.
T Consensus         6 v~q~p~~v~v~~G~~vtL~C~~~~~~~~~   34 (119)
T 2e27_L            6 MTQSPSSLSASLGGKVTITCKANQDIKKK   34 (119)
T ss_dssp             EEEECSEEEEETTCCEEEEEEESSCCTTC
T ss_pred             eEecCCeEEEeCCCCEEEEEEeCCCCCce
Confidence            44444567788999999999999887554

>3omz_A Human vdelta1 gamma delta T cell receptor delta1A; immunoglobulin fold, immune surveillance of cell stress PROT A/B, MIC-A/B binding, epithelium; 3.04A {Homo sapiens}

Probab=93.80  E-value=0.015  Score=37.81  Aligned_cols=33  Identities=15%  Similarity=0.145  Sum_probs=16.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|+...+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         2 s~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   34 (259)
T 3omz_A            2 SSNLEGRTKSVIRQTGSSAEITCDLAEGSTGYI   34 (259)
T ss_dssp             ---------CEEEETTCCEEEECCC-----CEE
T ss_pred             ccccccCCceeEecCCCcEEEEEEEccCCCcEE
Confidence            577777778889999999999999998886543

>1lk2_B Beta-2-microglobulin; class I MHC-peptide complex, high resolution, anisotropic AN refinement, immune system; HET: NAG FUC; 1.35A {Mus musculus} SCOP: b.1.1.2 PDB: 1bqh_B 1cd1_B 1fo0_L* 1fzj_B* 1fzm_B* 1fzo_B* 1g6r_L 1fzk_B* 1g7q_B* 1hoc_B 1inq_B 1juf_B 1k8d_B 1kbg_L* 1kj2_L* 1kj3_L 1kpu_B* 1kpv_B* 1ld9_B 1ldp_L* ...

Probab=93.76  E-value=0.12  Score=30.93  Aligned_cols=30  Identities=27%  Similarity=0.298  Sum_probs=22.4

Q ss_pred             cCCeEEEe-cceEEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -||.|.+- +..  ...|..++|.|.|.++..+
T Consensus         3 ~~P~V~v~~~~~--~~~~~~~~L~C~~~gfyP~   33 (99)
T 1lk2_B            3 KTPQIQVYSRHP--PENGKPNILNCYVTQFHPP   33 (99)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSS
T ss_pred             cCCEEEEEcCCc--ccCCCCEEEEEEEEEEECC
Confidence            48999983 443  3468899999999997544

>2y25_A Myomesin; structural protein, sarcomere, M-BAND, immunoglobulin-like D; 3.50A {Homo sapiens}

Probab=93.71  E-value=0.061  Score=34.90  Aligned_cols=35  Identities=14%  Similarity=-0.020  Sum_probs=28.0

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeee-CCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a~V   69 (70)
                      ...+|.+..+.. +...+|..++|.|.+.+. |.+.|
T Consensus         4 ~~~~P~~~~~~~-~~v~~G~~v~l~C~~~~~~p~~~v   39 (317)
T 2y25_A            4 PFTGPHFVEYLS-WEVTGECNVLLKCKVANIKKETHI   39 (317)
T ss_dssp             SSSCCEEEEEEE-EEEETTTEEEEEEEEESCCTTCEE
T ss_pred             ccCCCcEeeeee-EEECCCCeEEEEEEEcCCCCCCEE
Confidence            346888887765 777899999999999998 66654

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=93.69  E-value=0.047  Score=35.67  Aligned_cols=42  Identities=21%  Similarity=0.221  Sum_probs=29.2

Q ss_pred             eeeeEEEEeec------CCeEEEecceE-EeccCCcEEEEEEEee-eCCC
Q psy15736         26 VRRRRRRNQKN------LPEIEVERSWV-HSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        26 vs~~I~L~V~y------pPeI~v~~~~V-ha~~G~~a~L~CiV~A-~P~a   67 (70)
                      ....+.|.|.-      +|.|.+..+.. ....|..++|.|.+.+ .|.+
T Consensus       131 ~~~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P~~  180 (270)
T 3qib_D          131 FGPGTRLLVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  180 (270)
T ss_dssp             ECCCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             ECCcEEEEEccccccccCCceEEECCCccccccCCceEEEEEecceeCCC
Confidence            34556778776      88887754322 2345999999999999 5554

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=93.66  E-value=0.1  Score=34.18  Aligned_cols=21  Identities=14%  Similarity=0.093  Sum_probs=17.6

Q ss_pred             eEEeccCCcEEEEEEEeeeCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      -+...+|..++|.|.+.+.|.
T Consensus       160 ~~~v~~G~~v~L~C~~~~~~~  180 (268)
T 1x9q_A          160 GGLVQPGGAMKLSCVTSGFTF  180 (268)
T ss_dssp             CEEECTTCCEEEEEEEESSCG
T ss_pred             ceEecCCCcEEEEEEecCccc
Confidence            456788999999999998763

>1i8k_A Epidermal growth factor receptor antibody MR1SCFV light chain; antibody-peptide complex, immunoglobulin fold, type II' beta turn., immune system; 1.80A {Mus musculus} SCOP: b.1.1.1 PDB: 1i8i_A

Probab=93.65  E-value=0.093  Score=30.44  Aligned_cols=29  Identities=10%  Similarity=0.284  Sum_probs=22.0

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |......+.+.+|+.++|.|.+.+.|.+.
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~   32 (107)
T 1i8k_A            4 LTQSPASLSVATGEKVTIRCMTSTDIDDD   32 (107)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESSCCTTC
T ss_pred             eEeCCCeEEecCCCCEEEEEEECCCCCCc
Confidence            33334567789999999999999877554

>1hnf_A CD2; T lymphocyte adhesion glycoprotein; HET: NAG; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 1cdb_A 1gya_A* 1qa9_A

Probab=93.64  E-value=0.059  Score=34.80  Aligned_cols=46  Identities=13%  Similarity=0.135  Sum_probs=31.3

Q ss_pred             hcCcCCCccc--eeeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEE--VRRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~p--vs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|++.+....  .++.+.|+|..+   |.|...        +..++|.|.+.+.|.+.+
T Consensus        82 ~c~~~n~~g~~~~~~~~~L~V~~~~~~P~i~~~--------~~~v~L~C~~~~~p~~~~  132 (182)
T 1hnf_A           82 KVSIYDTKGKNVLEKIFDLKIQERVSKPKISWT--------CINTTLTCEVMNGTDPEL  132 (182)
T ss_dssp             EEEEEETTSCEEEEEEEEEEEECCCCCCEEEEE--------TTTTEEEEECSSCSSCEE
T ss_pred             EEEEEeCCCceeEEEEEEEEEcCcCCCCEEEEc--------cCcEEEEeEccCCCCCEE
Confidence            3666654333  357788999863   555542        347999999999987654

>1mq8_A ICAM-1, intercellular adhesion molecule-1, CD54 antigen; IG superfamily, rossmann fold, metal mediated protein interf immune system; HET: NAG; 3.30A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=93.64  E-value=0.045  Score=38.72  Aligned_cols=50  Identities=16%  Similarity=0.090  Sum_probs=37.4

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeE---EEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEI---EVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI---~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.....+....+.+.|.|.++|..   .....+  ..+|+.++|.|.|.+.+.+
T Consensus        64 ~C~~~~~~~~~~~~v~l~V~~~P~~v~I~~~~~~--~~~G~~~~LtC~v~g~~P~  116 (291)
T 1mq8_A           64 MCYSNCPDGQSTAKTFLTVYWTPERVELAPLPSW--QPVGKNLTLRCQVEGGAPR  116 (291)
T ss_dssp             EEEEECSSCEEEEECEEEECBCCSCCCBCCCCSB--CCSSCCCEEEEEECCCBST
T ss_pred             EEEEEcCCccEEEEEEEEEecCCCCCEEecCCcc--ccCCCCEEEEEEecCccCC
Confidence            3666666678899999999999864   332223  4679999999999986544

>1k5n_B Beta-2-microglobulin, light chain; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 PDB: 1a9b_B 1b0g_B 1b0r_B 1bd2_B 1cg9_B 1a9e_B 1duy_B 1eey_B 1eez_B 1efx_B 1gzp_B* 1gzq_B* 1hhg_B 1hhh_B 1hhi_B 1hhj_B 1hhk_B 1i1f_B 1i1y_B 1duz_B* ...

Probab=93.56  E-value=0.13  Score=30.74  Aligned_cols=30  Identities=27%  Similarity=0.345  Sum_probs=22.2

Q ss_pred             cCCeEEE-ecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -||.|.+ ++..  ...|..++|.|.|.++..+
T Consensus         4 ~~P~V~v~~~~~--~~~~~~~~L~C~~~gFyP~   34 (100)
T 1k5n_B            4 RTPKIQVYSRHP--AENGKSNFLNCYVSGFHPS   34 (100)
T ss_dssp             BCCEEEEEESSC--CCTTSCEEEEEEEEEEBSS
T ss_pred             CCCEEEEEeCCc--ccCCCcEEEEEEEEeeECC
Confidence            4789988 4433  3567899999999997444

>3tv3_H PGT128 heavy chain, IG gamma-1 chain C region; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_H* 3twc_H* 3tje_H* 3thm_H* 4fqq_H 2xzc_H* 2xza_H* 3b2u_H* 3b2v_H* 3mly_H 3mlz_H 4fq2_H 2ykl_H* 3tnm_H 4fqc_H* 4fq1_H* 2yk1_H* 3mlx_H 2jix_D 2vxq_H ...

Probab=93.54  E-value=0.14  Score=33.28  Aligned_cols=39  Identities=21%  Similarity=0.091  Sum_probs=27.2

Q ss_pred             eeEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ....|.|.    .+|.|.+..+......|..++|.|.+.++++
T Consensus       127 ~~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~v~l~C~~~~~~p  169 (239)
T 3tv3_H          127 RGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  169 (239)
T ss_dssp             CCEEEEECCCCCBCCEEEEECCCCCC--TTEEEEEEEEEEEBS
T ss_pred             CCcEEeeccCCCcCCEEEEECCChhhccCCcEEEEEEEeeEeC
Confidence            44566664    7888886655444456999999999999543

>1oga_E TRBC1, T-cell receptor beta chain C region; immune system/receptor, immune system/receptor/complex, TCR, MHC, immunodominance, FLU, complex; 1.40A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 2vlm_E 2vlk_E 2vlj_E 2vlr_E 2xna_B 2xn9_B 2axh_A 2axj_A 3scm_D* 3sda_D* 3sdc_D* 3sdd_D* 3qi9_D* 3mff_B* 2ak4_E 3he7_D* 2eyr_B 3pqy_E 3kxf_E 2cde_B ...

Probab=93.52  E-value=0.05  Score=35.52  Aligned_cols=39  Identities=23%  Similarity=0.274  Sum_probs=27.3

Q ss_pred             eEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEeee-CCC
Q psy15736         29 RRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        29 ~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      .+.|.|.      .+|.|.+..+. +....|..++|.|.+.++ |.+
T Consensus       108 ~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  154 (252)
T 1oga_E          108 GTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  154 (252)
T ss_dssp             CEEEEEESCGGGCBCCEEEEECCCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             CEEEEEecccCCCCCCeEEEECCChhhhccCCceEEEEEEeeEcCCC
Confidence            3456664      68999886433 233469999999999996 653

>2dru_A Chimera of CD48 antigen and T-cell surface antige; CD2 binding domain of CD48, immune system; HET: NAG; 2.60A {Rattus norvegicus}

Probab=93.50  E-value=0.064  Score=33.99  Aligned_cols=45  Identities=18%  Similarity=0.119  Sum_probs=30.7

Q ss_pred             hcCcCCCccceeeeEEEEeecC---CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNL---PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~yp---PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|...+.. ...+.+.|+|.-+   |.|.+        .+..++|.|.+...|.+.|
T Consensus        85 ~C~v~~~~-~~~~~~~L~V~~~~~~P~i~~--------~~~~v~L~C~~~~gp~p~i  132 (180)
T 2dru_A           85 YMRMLHET-EDQWKITMEVYEMVSKPMIYW--------ECSNATLTCEVLEGTDVEL  132 (180)
T ss_dssp             EEEEESSS-EEEEEEEEEEECCCCCCEEEE--------EGGGTEEEEECSSCTTCEE
T ss_pred             EEEEEcCC-eEEEEEEEEEECCCCCCEEEe--------cCCCEEEEEEeCCCCCCEE
Confidence            36655555 6778899999765   55544        2467999999933387754

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=93.49  E-value=0.08  Score=30.69  Aligned_cols=22  Identities=18%  Similarity=0.228  Sum_probs=17.7

Q ss_pred             eEEeccCCcEEEEEEEeeeCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .+...+|..++|.|.+.+.|.+
T Consensus        17 ~v~v~~G~~v~L~C~~~g~p~~   38 (122)
T 3s35_X           17 GIELSVGEKLVLNCTARTELNV   38 (122)
T ss_dssp             CEEEEETCCEEEEEEEEECTTC
T ss_pred             CEEEecCCeEEEEEEEEcCCCC
Confidence            3455679999999999997654

>1ugn_A LIR1, leukocyte immunoglobulin-like receptor 1; immunoglobulin-like folds, immune system; 1.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 3d2u_D* 1g0x_A 1p7q_D 1ufu_A 1vdg_A 2gw5_A 2dyp_D 2otp_A 3q2c_A

Probab=93.45  E-value=0.07  Score=33.13  Aligned_cols=31  Identities=19%  Similarity=0.147  Sum_probs=25.2

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .-+|.|++..+. ...+|..++|.|.+.+.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~   33 (198)
T 1ugn_A            3 LPKPTLWAEPGS-VITQGSPVTLRCQGGQETQ   33 (198)
T ss_dssp             CCCCEEEEESCS-EEETTCCEEEEEECCTTCC
T ss_pred             CCCCeEeccCCC-cccCCCcEEEEEEecCCCc
Confidence            357888887664 5678999999999998875

>3esu_F Antibody 14B7* light chain and antibody 14B7* heavy chain linked with A synthetic...; single-chain FV, monoclonal antibody, immunoglobulin; 1.30A {Mus musculus} PDB: 3et9_F 3esv_F 3etb_F 1h8n_A 1h8s_A* 1h8o_A*

Probab=93.44  E-value=0.076  Score=33.94  Aligned_cols=30  Identities=10%  Similarity=0.091  Sum_probs=23.8

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         7 v~~~p~~~~v~~G~~v~L~C~~~~~~~~~i   36 (250)
T 3esu_F            7 LIQSTSSLSASLGDRVTISCRASQDIRNYL   36 (250)
T ss_dssp             EECSCSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             EEecCCEEEeeCCCcEEEEEEecccCCceE
Confidence            444455677789999999999999998754

>2d3v_A Leukocyte immunoglobulin-like receptor subfamily A member 5 isoform 1; immunoglobulin-like fold, immune system; 1.85A {Homo sapiens}

Probab=93.41  E-value=0.066  Score=33.32  Aligned_cols=31  Identities=13%  Similarity=0.094  Sum_probs=25.1

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .-+|.|++..+. ...+|..++|.|.+.+.|.
T Consensus         3 ~~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~~   33 (196)
T 2d3v_A            3 LSKATLWAEPGS-VISRGNSVTIRCQGTLEAQ   33 (196)
T ss_dssp             CCBCEEEEESCS-EEETTCCEEEEEECCTTCC
T ss_pred             CCCCEEEeCCCC-cccCCCeEEEEEeCCCCCc
Confidence            457889887664 5678999999999988765

>3sob_L Antibody light chain; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_A 3u1s_L*

Probab=93.27  E-value=0.12  Score=32.29  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=26.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus        24 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   56 (237)
T 3sob_L           24 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAV   56 (237)
T ss_dssp             CCCEEEECSEEEEETTCCEEEEEEESSCCTTCE
T ss_pred             cceEEeCCCeEEEeCCCcEEEEEecCCCCCceE
Confidence            355666666788899999999999999877654

>1mqk_L Antibody 7E2 FV fragment, light chain; membrane protein, cytochrome C oxidase, high- resolution structure, immune system; 1.28A {Mus musculus} SCOP: b.1.1.1 PDB: 1ar1_D 3ehb_D* 3hb3_D* 1qle_L* 1f6l_L 3iy2_A 1vfa_A 1dvf_A 1kir_A 1g7i_A 1g7j_A 1a2y_A 1kip_A 1kiq_A 1vfb_A 1g7h_A 1a7o_L 1g7l_A 1g7m_A 1a7n_L ...

Probab=93.26  E-value=0.12  Score=31.06  Aligned_cols=29  Identities=7%  Similarity=0.027  Sum_probs=22.0

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~~~~v   33 (120)
T 1mqk_L            5 TQTPVSLSASVGETVTITCRASENIYSYL   33 (120)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             EecCCeEEEcCCCcEEEEEEeCCCCCceE
Confidence            33345677889999999999998875543

>2vsd_A CHIR AB1; immune system receptor, FC receptor; HET: NAG NDG MAN; 1.82A {Gallus gallus}

Probab=93.21  E-value=0.063  Score=31.55  Aligned_cols=30  Identities=17%  Similarity=0.176  Sum_probs=24.1

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ..+|.|++..++ ....|..++|.|.+...|
T Consensus         3 ~~kP~i~~~p~~-~v~~G~~VtL~C~~~~~~   32 (105)
T 2vsd_A            3 LPQPSLSLHPSQ-GVSLGDTVTLRCHLPRMA   32 (105)
T ss_dssp             CCCCEEEEESCS-SCCTTCEEEEEEECCSSC
T ss_pred             CCCCEEEeCCCC-CcCcCCCEEEEEEcCCCC
Confidence            357999998777 467899999999987643

>3p2t_A Leukocyte immunoglobulin-like receptor subfamily 4; LILR, IG, inhibitory receptor, disulfide, immune system; 1.70A {Homo sapiens}

Probab=93.20  E-value=0.071  Score=33.05  Aligned_cols=30  Identities=13%  Similarity=0.045  Sum_probs=23.9

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -+|.|+...+. ....|..++|.|.+.+ |.+
T Consensus         4 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~-~~~   33 (196)
T 3p2t_A            4 PKPTLWAEPGS-VISWGNSVTIWCQGTL-EAR   33 (196)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCT-TCC
T ss_pred             CCCEEEccCCC-cCCCCCcEEEEeeCCC-CCC
Confidence            47889888666 5578999999999988 444

>2znx_A SCFV; fluorotryptohpan, 5-fluorotryptophan, 19F, single chain FV, allergen, antimicrobial, bacteriolytic enzyme, glycosidase, hydrolase; HET: FTR 1PG; 2.30A {Homo sapiens} PDB: 2znw_A*

Probab=93.20  E-value=0.11  Score=33.50  Aligned_cols=31  Identities=10%  Similarity=0.094  Sum_probs=24.6

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   33 (242)
T 2znx_A            3 VLTQSPATLSVTPGNSVSLSCRASQSIGNNL   33 (242)
T ss_dssp             CEEEECSEEEECTTCCEEEEEEESSCCTTCE
T ss_pred             cEEEcCCeEEEcCCCcEEEEEEeCCCCCceE
Confidence            4555556677889999999999999886654

>2ywz_A NEW antigen receptor variable domain; IG VNAR, immune system; 2.21A {Orectolobus maculatus} PDB: 2ywy_A

Probab=93.08  E-value=0.15  Score=29.93  Aligned_cols=25  Identities=8%  Similarity=0.304  Sum_probs=20.6

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      |+...+.+.+.+|+.++|.|.+.+.
T Consensus         3 v~q~p~~~~~~~G~~v~L~C~~~~~   27 (111)
T 2ywz_A            3 VDQTPRTITKETGESLTIKCVLKDH   27 (111)
T ss_dssp             EEEECSEEEECTTCCEEEEEEEESC
T ss_pred             eEECCCcEEEccCCCEEEEeEECCC
Confidence            4555567888999999999999876

>1i3g_L Antibody FV fragment; antibiotic; 2.44A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy6_A

Probab=93.04  E-value=0.12  Score=30.19  Aligned_cols=29  Identities=7%  Similarity=0.269  Sum_probs=21.9

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |+...+.+.+.+|..++|.|.+...|.+.
T Consensus         7 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~   35 (111)
T 1i3g_L            7 LTQSHKFMSTSVGDRVSITCKASQDVGTA   35 (111)
T ss_dssp             EEESCSEEECCTTCCEEEEEEESSCCTTC
T ss_pred             EEEeCCEEEEcCCCCEEEEEEeCCCCCCC
Confidence            44444567789999999999998876443

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=93.03  E-value=0.046  Score=36.20  Aligned_cols=39  Identities=21%  Similarity=0.169  Sum_probs=28.0

Q ss_pred             eeEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ..+.|.|.      .+|.|.+..+. +....|..++|.|.+.++|.
T Consensus       134 ~~~~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~v~L~C~~~g~~P  179 (279)
T 2wbj_D          134 PGTRLTVTEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYP  179 (279)
T ss_dssp             CCEEEEEESCGGGCBCCEEEEEECCHHHHHHHSCCEEEEEEEEEBS
T ss_pred             CCEEEEEecCCCCCCCCEEEEECCCcccccCCCceEEEEEEeeEcC
Confidence            44667775      48999876433 23347999999999999844

>4dzb_B Vbeta2 (MAIT T cell receptor); immune system; 1.70A {Homo sapiens} PDB: 1ymm_E* 3o4l_E* 3o6f_D 3t0e_D 1ktk_E 3mfg_B 2ij0_E

Probab=92.99  E-value=0.13  Score=32.79  Aligned_cols=31  Identities=19%  Similarity=0.269  Sum_probs=25.3

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|..+.+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   33 (246)
T 4dzb_B            3 VVSQHPSWVISKSGTSVKIECRSLDFQATTM   33 (246)
T ss_dssp             CEEEECSEEEEETTSCEEEEEEESSSCCCSE
T ss_pred             ccEECCcEEEEeCCCcEEEEeEecCCCceEE
Confidence            4566666788899999999999998887654

>3rbg_A Cytotoxic and regulatory T-cell molecule; IGV, crtam, structural genomics, PSI-biology, NEW YORK struc genomics research consortium, nysgrc; 2.30A {Homo sapiens}

Probab=92.92  E-value=0.044  Score=32.56  Aligned_cols=26  Identities=15%  Similarity=0.265  Sum_probs=21.5

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+-+.+.+|+.++|.|.+.+.|.+.|
T Consensus         8 ~~~~~v~~G~~v~L~C~~~~~p~~~v   33 (124)
T 3rbg_A            8 TETITVEEGQTLTLKCVTSLRKNSSL   33 (124)
T ss_dssp             EEEEEEETTSCEEEEEECCCCTTCEE
T ss_pred             CccEEEcCCCCEEEEeEEeccCCCEE
Confidence            44566789999999999999988754

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=92.92  E-value=0.13  Score=37.48  Aligned_cols=49  Identities=14%  Similarity=-0.021  Sum_probs=33.1

Q ss_pred             hcCcCCCccce-eeeEEEE--e--ecCCeEEEecceEEeccCCcEE-EEEEEeeeCCC
Q psy15736         16 EEEPEKDKEEV-RRRRRRN--Q--KNLPEIEVERSWVHSGEGYEAQ-LVCIVHAEPHA   67 (70)
Q Consensus        16 ~~~~~~~~~pv-s~~I~L~--V--~ypPeI~v~~~~Vha~~G~~a~-L~CiV~A~P~a   67 (70)
                      -|.+.+.+.+. .+.+.+.  +  .++|.|.+..+-.   .|..++ |.|.+.+++.+
T Consensus       377 ~C~a~n~~~~~~~~~~~~~~~~~~~~~p~v~~~~~~~---~~~~~~~L~C~~~g~~P~  431 (512)
T 1zvo_C          377 TCTLNHPSLPPQRLMALREPAAQAPVKLSLNLLASSD---PPEAASWLLCEVSGFSPP  431 (512)
T ss_pred             EEEEEeCCCCCCceeEEeecCCCCCCCCEEEEEccCc---CCCCceEEEEEEeeeCCC
Confidence            47777665443 4445432  2  5899988764433   799999 99999996554

>3f8u_B Tapasin; endoplasmic reticulum, glycoprotein, immunoglobulin domain, microsome, protein disulfide isomerase, thioredoxin-like FO like domain; HET: NAG; 2.60A {Homo sapiens}

Probab=92.67  E-value=0.13  Score=39.00  Aligned_cols=51  Identities=10%  Similarity=0.065  Sum_probs=36.1

Q ss_pred             cCcCCCccceeeeEEEEeecCCeEEEecce-EEeccCC-cEEEEEEEeeeCCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPEIEVERSW-VHSGEGY-EAQLVCIVHAEPHA   67 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPeI~v~~~~-Vha~~G~-~a~L~CiV~A~P~a   67 (70)
                      |...+......+.+.|+|.-+|.|.+..+- +....|+ .++|.|.+.+++.+
T Consensus       271 C~v~~~~~~~~~~v~L~V~~pP~V~v~p~~~~~~~~G~~~vtL~C~a~GfyP~  323 (401)
T 3f8u_B          271 ATIHLPYLQGQVTLELAVYKPPKVSLMPATLARAAPGEAPPELLCLVSHFYPS  323 (401)
T ss_dssp             EEEEETTEEEEEEEEEEEEBCCEEEEESSSCCCCCTTCCCCCEEEEEEEEBSS
T ss_pred             EEEEecccceeEEEEEeeccCCeEeeccCcceeecCCCccEEEEEEecCCcCC
Confidence            444444444567889999999999987433 3245686 89999999997443

>1eaj_A Coxsackie virus and adenovirus receptor; virus/viral protein receptor, immunoglobulin V domain fold, symmetric dimer; 1.35A {Homo sapiens} SCOP: b.1.1.1 PDB: 1f5w_A 2j12_B 2j1k_A 2wbw_B* 2w9l_A* 1rsf_A 1jew_R 1kac_B 1p69_B 1p6a_B

Probab=92.44  E-value=0.059  Score=30.46  Aligned_cols=28  Identities=21%  Similarity=0.369  Sum_probs=22.0

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |..+...+.+.+|..++|.|.+.+.|.+
T Consensus         8 v~~~~~~v~~~~G~~v~L~C~~~~~~~~   35 (126)
T 1eaj_A            8 ITTPEEMIEKAKGETAYLPCKFTLSPED   35 (126)
T ss_dssp             ESSSEEEEEEETTSCEEECCBEECCTTC
T ss_pred             EECCCceEEEEeCCCEEEEEEEecCCCC
Confidence            3334567888999999999999987754

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=92.33  E-value=0.067  Score=34.68  Aligned_cols=39  Identities=8%  Similarity=0.101  Sum_probs=26.1

Q ss_pred             eeEEEEeec-------CCeEEEecce-EEeccCCcEEEEEEEeee-CC
Q psy15736         28 RRRRRNQKN-------LPEIEVERSW-VHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        28 ~~I~L~V~y-------pPeI~v~~~~-Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      ..+.|+|..       +|.+.+-.+. .....|..++|.|.+.++ |.
T Consensus       115 ~~~~L~V~~~~~~~~~~p~~~v~~p~~~~~~~g~~v~L~C~~~g~~P~  162 (242)
T 1hxm_B          115 PGTKLIITDKQLDADVSPKPTIFLPSIAETKLQKAGTYLCLLEKFFPD  162 (242)
T ss_dssp             CCEEEEEESSCCCSCCSCBCCCCCCCGGGGGSSSCEEEEEEEEEESSC
T ss_pred             CcEEEEEcccccCCCcCCCceEECCChhhcccCCCceEEEEEeeEECC
Confidence            467888886       4555443221 123469999999999998 64

>1bii_B Beta-2 microglobulin, MHC class I H-2DD; complex (MHC I/peptide), major histocompatibility complex class I DD, transmembrane, glycoprotein; 2.40A {Mus musculus} SCOP: b.1.1.2

Probab=92.30  E-value=0.24  Score=30.89  Aligned_cols=32  Identities=25%  Similarity=0.330  Sum_probs=23.9

Q ss_pred             ecCCeEEE-ecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         35 KNLPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        35 ~ypPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .-+|.|.+ ++..  ...|..++|.|.|.++.++.
T Consensus        22 ~~~P~V~v~~~~~--~~~~~~~tL~C~a~gFyP~~   54 (119)
T 1bii_B           22 QKTPQIQVYSRHP--PENGKPNILNCYVTQFHPPH   54 (119)
T ss_dssp             CBCCEEEEEESSC--CCSSSCEEEEEEEEEEBSSC
T ss_pred             CcCCEEEEEcCCc--ccCCCCEEEEEEEEeecCCC
Confidence            57899998 4443  35688999999999975543

>3auv_A SC-DSFV derived from the G6-FAB; SC-DSFV (disulfide-stabilized SCFV), SCFV, monovalent antibo antibody engineering, immune system; 2.40A {Homo sapiens} PDB: 2kh2_B 3iy0_L

Probab=92.27  E-value=0.18  Score=33.29  Aligned_cols=33  Identities=9%  Similarity=0.108  Sum_probs=26.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.|..+.+.+...+|..++|.|.+.+.|.+.|
T Consensus        12 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~p~~~i   44 (276)
T 3auv_A           12 DIQMTQSPSSLSASVGDRVTITCRASQDVSTAV   44 (276)
T ss_dssp             CCCEEEECSEEECCTTCCEEEEEEESSCCTTCE
T ss_pred             ceeEEeCCCeEEEcCCCCEEEEeEcCCCCCCcE
Confidence            355666666778899999999999999987654

>4ffy_L DENV1-E111 single chain variable fragment (light; viral envelope proteins, structural genomics, antibody epito flavivirus, niaid; 2.50A {Mus musculus}

Probab=92.26  E-value=0.2  Score=30.03  Aligned_cols=28  Identities=11%  Similarity=0.101  Sum_probs=22.7

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +.|+.+...+.+.+|..++|.|.+...|
T Consensus         2 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~   29 (126)
T 4ffy_L            2 IVLTQSPASLAVSLGQRATISCRASESV   29 (126)
T ss_dssp             CCEEEECSEEEEETTSCEEEEEEESSCC
T ss_pred             CcEEeCCCeEEEeCCCCEEEEEecCCCc
Confidence            4566666678889999999999998876

>4frw_A Poliovirus receptor-related protein 4; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; 3.50A {Homo sapiens}

Probab=92.16  E-value=0.062  Score=32.37  Aligned_cols=23  Identities=22%  Similarity=0.323  Sum_probs=19.6

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .|.+.+|+.++|.|.+.+.|.+.
T Consensus         8 ~vtv~~G~~v~L~C~v~~~~~~~   30 (218)
T 4frw_A            8 VVTVVLGQDAKLPCFYRGDSGEQ   30 (218)
T ss_dssp             EEEEETTSCEEECCEECCCTTCE
T ss_pred             eEEEEcCCCEEEEEEEEcCCCCC
Confidence            46668899999999999998764

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=92.09  E-value=0.059  Score=34.46  Aligned_cols=49  Identities=14%  Similarity=0.100  Sum_probs=31.4

Q ss_pred             hcCcCCCc--cceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEE---eeeCCCCC
Q psy15736         16 EEEPEKDK--EEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIV---HAEPHADP   69 (70)
Q Consensus        16 ~~~~~~~~--~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV---~A~P~a~V   69 (70)
                      .|.+.+..  ...+..+.|.|.  |.   ..+.+....|..++|.|.+   .+.|.+.|
T Consensus       100 ~C~~~~~~~~~~~~~~~~l~V~--~~---~p~~~~v~~G~~v~L~C~~~~~~~~p~~~v  153 (268)
T 3mj6_A          100 TCEIRLKNESMVMKKPVELWVL--PE---EPRDLRVRVGDTTQMRCSIQSTEEKRVTKV  153 (268)
T ss_dssp             EEEEEETTCCCEEEEEEEEEEE--CC---CCSEEEEETTCCEEECCBCEESSSSCCCEE
T ss_pred             EEEEEecCCcceEEEEEEEEEe--cc---CCCccccccCCcEEEEEEecCCCCCCccce
Confidence            36665433  335566777765  21   1224566789999999999   66677754

>4gos_A V-SET domain-containing T-cell activation inhibit; immunoglobulin domain, glycoprotein, disulfide bond, immunit adaptive immunity; HET: NAG BMA MAN; 1.59A {Homo sapiens}

Probab=92.05  E-value=0.11  Score=31.65  Aligned_cols=29  Identities=17%  Similarity=0.213  Sum_probs=23.2

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ..|+++...+.+.+|.+|+|.|.+...+.
T Consensus         6 ~sVt~~~~~v~g~vG~~v~L~C~~~~~~~   34 (125)
T 4gos_A            6 HSITVTTVASAGNIGEDGILSCTFEPDIK   34 (125)
T ss_dssp             CCSCEEEECEEEETTSCEEEEEEECCCSC
T ss_pred             eEEEccCceEEEeCCCCEEEEEEEcCCcc
Confidence            34677777888899999999999975443

>2rgs_A I, IG gamma-2B heavy chain; FC-fragment, immunoglobulin, glycosylation, immune system; HET: NAG FUC MAN GAL; 2.13A {Mus musculus}

Probab=92.04  E-value=0.061  Score=34.47  Aligned_cols=31  Identities=10%  Similarity=0.140  Sum_probs=23.5

Q ss_pred             ecCCeEEEecceEE--eccCCcEEEEEEEeeeC
Q psy15736         35 KNLPEIEVERSWVH--SGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        35 ~ypPeI~v~~~~Vh--a~~G~~a~L~CiV~A~P   65 (70)
                      ..+|.|.+..+...  ..+|..++|.|.+.+.|
T Consensus         7 ~~~p~v~~~pp~~~~~v~~G~~v~L~C~~~g~~   39 (218)
T 2rgs_A            7 EGGPSVFIFPPNIKDVLMISLTPKVTCVVVDVS   39 (218)
T ss_dssp             --CCEEEEECCCHHHHHCTTSCCEEEEEEEEEC
T ss_pred             CCCCEEEEECcCHHHhhccCCCeeEEEEEcCCc
Confidence            45778877766555  57899999999999984

>2ghw_B Anti-SARS SCFV antibody, 80R; S protein, neutralizing antibody, virus/viral protein/antibiotic complex; 2.30A {Homo sapiens} SCOP: b.1.1.1 b.1.1.1

Probab=91.98  E-value=0.21  Score=31.79  Aligned_cols=27  Identities=11%  Similarity=0.084  Sum_probs=21.3

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +.|..+.+ +.+.+|..++|.|.+.+.|
T Consensus         4 ~~v~~p~~-~~v~~G~~v~L~C~~~g~p   30 (247)
T 2ghw_B            4 VQLVQSGG-GVVQPGKSLRLSCAASGFA   30 (247)
T ss_dssp             CEEEEECC-EEECTTCCEEEEEEEESSC
T ss_pred             eEEEecCC-EEEecCCcEEEEEEecccc
Confidence            44555544 6678999999999999987

>1oll_A NK receptor; immune system/receptor, NK cell triggering receptor, immune system, IG domain, cytotoxicity, C2-type IG-like domains; 1.93A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=91.95  E-value=0.14  Score=31.80  Aligned_cols=29  Identities=14%  Similarity=0.122  Sum_probs=23.1

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      -+|.|++..+. ...+|..++|.|.+.+.|
T Consensus         3 ~~P~i~~~p~~-~v~~G~~v~L~C~~~~~~   31 (188)
T 1oll_A            3 PKPFIWAEPHF-MVPKEKQVTICCQGNYGA   31 (188)
T ss_dssp             CCCEEEEESCS-EEETTCCEEEEEECCTTC
T ss_pred             CCCEEEeecCC-cCCCCCCEEEEEecCCCC
Confidence            47899988766 567899999999986543

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=91.90  E-value=0.096  Score=34.05  Aligned_cols=40  Identities=20%  Similarity=0.246  Sum_probs=27.2

Q ss_pred             eeEEEEee------cCCeEEEecce-EEeccCCcEEEEEEEee-eCCC
Q psy15736         28 RRRRRNQK------NLPEIEVERSW-VHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        28 ~~I~L~V~------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      ....|.|.      .+|.|.+..+. .....|..++|.|.+.+ .|.+
T Consensus       108 ~~t~l~V~~~~~~~~~P~v~~~~~~~~~~~~g~~~~L~C~~~g~~P~~  155 (253)
T 3to4_D          108 EGSKLTVLEDLKNVFPPEVAVFEPSEAEISHTQKATLVCLATGFYPDH  155 (253)
T ss_dssp             CCEEEEEESCSTTCBCCEEEEEECCHHHHHHHSEEEEEEEEEEEBSSC
T ss_pred             CCEEEEEecCCCCCCCCeEEEeCCChhhcccCCceEEEEEEceEECCc
Confidence            44566665      78888875432 22235789999999999 4554

>3sob_H Antibody heavy chain, low-density lipoprotein receptor-related protein; beta propeller, protein binding-immune system complex; 1.90A {Homo sapiens} PDB: 1pkq_B 3uls_H 3ulu_D* 3ulv_D*

Probab=91.87  E-value=0.38  Score=31.41  Aligned_cols=39  Identities=18%  Similarity=0.064  Sum_probs=25.1

Q ss_pred             eeEEEEe----ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         28 RRRRRNQ----KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        28 ~~I~L~V----~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ....|.|    ..+|.|.+..+......|..++|.|.+.++++
T Consensus       141 ~~~~l~V~~~~~~~P~i~~~~~~~~~~~g~~v~L~C~~~~~~p  183 (256)
T 3sob_H          141 QGTLVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  183 (256)
T ss_dssp             CCEEEEECSSCCBCCEEEEECCC-----TTEEEEEEEEEEEBS
T ss_pred             CCEEEEEecCCCCCCEEEEECCCcccccCCcEEEEEEEEEEEC
Confidence            3445666    47888886555444567999999999999543

>2yz1_A Tyrosine-protein phosphatase non-receptor type substrate 1; beta-sandwich, structural genomics, NPPSFA; 1.40A {Mus musculus}

Probab=91.81  E-value=0.11  Score=30.35  Aligned_cols=28  Identities=18%  Similarity=0.271  Sum_probs=20.8

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |..+.+.+.+.+|..++|.|.+.+. |..
T Consensus        10 v~q~p~~~~~~~G~~v~L~C~~~~~~~~~   38 (120)
T 2yz1_A           10 VTQPEKSVSVAAGDSTVLNCTLTSLLPVG   38 (120)
T ss_dssp             EECCSSEEEECTTCCEEECCEESCCCSCC
T ss_pred             EECCCceEEEeCCCCEEEEeEECCCCCCc
Confidence            3344456778899999999999875 443

>1ntl_A CRRY-IG; immunology, complement, glycoprotein, SCR, CCP, immune system; NMR {Mus musculus}

Probab=91.76  E-value=0.21  Score=37.19  Aligned_cols=44  Identities=7%  Similarity=0.097  Sum_probs=30.4

Q ss_pred             cceeeeEEEE--eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         24 EEVRRRRRRN--QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        24 ~pvs~~I~L~--V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .+..+.+.+.  +.++|.|.+-.+......|..++|.|.|.++..+
T Consensus       434 ~~~~~~~~~~~~~~~~P~V~~~~~~~~~~~~~~~~L~C~v~gfyP~  479 (551)
T 1ntl_A          434 APIEKTISKTKGRPKAPQLYTIPPPKEQMAKDKVSLTCMITDFFPE  479 (551)
T ss_pred             CCeEEEEecCCCCCcCCceEEeCCChhhccCCceEEEEEEEEeECC
Confidence            3555565554  4599998876444334569999999999994433

>3tf7_C 42F3 MUT7 SCFV (42F3 alpha chain, linker, 42F3 BE; IG and MHC, antigen recognition, TCR-PMHC, membrane receptor system; 2.75A {Mus musculus}

Probab=91.75  E-value=0.1  Score=34.00  Aligned_cols=32  Identities=19%  Similarity=0.166  Sum_probs=25.2

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus         4 ~~v~q~p~~~~v~~G~~v~L~C~~~~~~~~~v   35 (256)
T 3tf7_C            4 QSVTQPDARVTVSEGASLQLRCKYSYSATPYL   35 (256)
T ss_dssp             CEEECSCSEEEEETTSCEEECCEEECSSCCEE
T ss_pred             cEEEecCceEEecCCCeEEEEEEeCCCCCceE
Confidence            45555556777889999999999998887654

>3bp6_B Programmed cell death 1 ligand 2; PD-1, PD-L2, complex, costimulation, glycoprotein, immunoglo domain, membrane, transmembrane, receptor; 1.60A {Mus musculus} PDB: 3bp5_B 3rnq_B 3bov_A 3rnk_B

Probab=91.71  E-value=0.096  Score=32.27  Aligned_cols=27  Identities=11%  Similarity=0.153  Sum_probs=21.3

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |..+...+.+.+|..+.|.|.+.+.|.
T Consensus         5 v~~p~~~v~v~~G~~v~L~C~~~~~p~   31 (202)
T 3bp6_B            5 VTAPKEVYTVDVGSSVSLECDFDRREC   31 (202)
T ss_dssp             EECSCSEEEEETTSCEEEEEEECTTC-
T ss_pred             EecCCcCEEEeCCCcEEEEEEecCCCC
Confidence            444555677889999999999999885

>3bqu_C 3H6 FAB light chain; beta sheet, immune system; 3.00A {Mus musculus}

Probab=91.68  E-value=0.09  Score=33.12  Aligned_cols=33  Identities=12%  Similarity=0.185  Sum_probs=19.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.|....+.+.+.+|..++|.|.+.+.|.+.|
T Consensus        23 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~~~~v   55 (233)
T 3bqu_C           23 ETTVTQSPASLSMSIGEKVTIRCITSTDIDDDM   55 (233)
T ss_dssp             CCCEEEECSBC-------CCEEEEEEEEESSCE
T ss_pred             ceeEEEcCCeEEEecCCCEEEEEecCCcCCCeE
Confidence            466666556677789999999999999886654

>3grw_A Fibroblast growth factor receptor 3; FGFR3, protein-protein complex, receptor tyrosine kinas binding, immunoglobulin domain, kinase, membrane, nucleotid binding; HET: NAG; 2.10A {Homo sapiens}

Probab=91.61  E-value=0.081  Score=33.16  Aligned_cols=26  Identities=8%  Similarity=0.210  Sum_probs=22.0

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+...+|..++|.|.+.+.|.+.|
T Consensus        22 ~~~~~v~~G~~v~L~C~~~~~p~~~v   47 (241)
T 3grw_A           22 KKLLAVPAANTVRFRCPAAGNPTPSI   47 (241)
T ss_dssp             CCEEEEETTSEEEEECCEECSSCCEE
T ss_pred             CcceEEcCCCeEEEEEEecCCCCcee
Confidence            34677789999999999999998754

>1l6x_A Immunoglobulin gamma-1 heavy chain constant regio; IGG1 FC, FC complex, immune system; HET: NAG BMA MAN GAL FUL; 1.65A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2iwg_A* 3v7m_A* 3d6g_A* 3agv_A* 1oqo_A* 1oqx_A* 3v95_A* 2wah_A* 3sgj_A* 3sgk_A* 2dtq_A* 2dts_A* 3ave_A* 3ay4_A* 3do3_A* 2gj7_A* 1t83_A* 1t89_A* 1dn2_A* 3dnk_A ...

Probab=91.59  E-value=0.11  Score=32.85  Aligned_cols=29  Identities=10%  Similarity=0.072  Sum_probs=22.6

Q ss_pred             CCeEEEecceEEe--ccCCcEEEEEEEeeeC
Q psy15736         37 LPEIEVERSWVHS--GEGYEAQLVCIVHAEP   65 (70)
Q Consensus        37 pPeI~v~~~~Vha--~~G~~a~L~CiV~A~P   65 (70)
                      +|.|.+..+....  .+|..++|.|.+.+.|
T Consensus         1 ~P~v~~~pps~~~~~~~G~~v~L~C~~~g~~   31 (207)
T 1l6x_A            1 GPSVFLFPPKPKDTLMISRTPEVTCVVVDVS   31 (207)
T ss_dssp             CCEEEEECCCHHHHHCTTSCCEEEEEEEEEC
T ss_pred             CCeEEEeCcChHHheecCCceEEEEEEeccc
Confidence            4667776555555  5899999999999986

>2fbo_J V1V2;, variable region-containing chitin-binding protein 3; immunoglobulin, VCBP, V-type, V SET, immune system; 1.85A {Branchiostoma floridae}

Probab=91.52  E-value=0.12  Score=32.41  Aligned_cols=29  Identities=14%  Similarity=0.094  Sum_probs=22.0

Q ss_pred             EEecceEEeccCCcEEEEEEEee---eCCCCC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHA---EPHADP   69 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A---~P~a~V   69 (70)
                      ..+.+.+.+.+|..++|.|.+.+   .|.+.|
T Consensus         6 ~~~~~~v~v~~G~~v~L~C~~~~~~~~~~~~v   37 (250)
T 2fbo_J            6 RTTHTEVEVHAGGTVELPCSYQLANDTQPPVI   37 (250)
T ss_dssp             ECSCSEEEECTTSCEEECCEEEECSCCSCCEE
T ss_pred             EcCCCceEEecCCeEEEEEEeEcCCCCCceEE
Confidence            34445677889999999999998   666543

>1lk3_L 9D7 light chain; antigen-antibody complex, immune system; 1.91A {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.2 PDB: 1fn4_A 1c5d_L 1bfo_A 3b9k_L*

Probab=91.48  E-value=0.21  Score=31.02  Aligned_cols=25  Identities=8%  Similarity=0.118  Sum_probs=20.4

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.+.+.+|..++|.|.+.+.|.+.|
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~~~v   32 (210)
T 1lk3_L            8 PALTVSPGEKLTISCKASESVTSRM   32 (210)
T ss_dssp             SEEEECTTSCEEEEEEESSCCTTCE
T ss_pred             CcEEEcCCCCEEEEeeCCCccCCCE
Confidence            3456688999999999999987654

>3p73_B Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, immune system; HET: 16A; 1.32A {Gallus gallus} SCOP: b.1.1.0 PDB: 3p77_B* 4g43_B 4g42_B 4e0r_B 3bev_B 3bew_B 3jvg_C* 2yez_B 2yf5_B 2yf6_B 2yf1_B*

Probab=91.39  E-value=0.34  Score=28.89  Aligned_cols=30  Identities=20%  Similarity=0.293  Sum_probs=21.6

Q ss_pred             CCeEEE-ecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ||.|.+ +++-.  ..|+.++|.|.|.++..+.
T Consensus         4 ~P~V~v~~~~~~--~~~~~~~L~C~~~gFyP~~   34 (99)
T 3p73_B            4 TPKVQVYSRFPA--SAGTKNVLNCFAAGFHPPK   34 (99)
T ss_dssp             CCEEEEEESSCC--CTTSCEEEEEEEEEESSSC
T ss_pred             CCEEEEEeCCcc--cCCCCEEEEEEEeeeECCC
Confidence            788888 33322  3588999999999975543

>2wqr_A IG epsilon chain C region; immune system, immunoglobulin domain, glycoprotein; HET: NAG BMA MAN PG4; 1.90A {Homo sapiens} PDB: 2y7q_B* 1o0v_A* 3h9y_A* 3h9z_A* 3ha0_A* 1fp5_A 1f6a_B 1g84_A

Probab=91.38  E-value=0.039  Score=37.01  Aligned_cols=52  Identities=6%  Similarity=-0.018  Sum_probs=34.8

Q ss_pred             hcCcCCCccceeeeEEE---EeecCCeEEEecc-eEEeccCCcEEEEEEEeeeC-CC
Q psy15736         16 EEEPEKDKEEVRRRRRR---NQKNLPEIEVERS-WVHSGEGYEAQLVCIVHAEP-HA   67 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L---~V~ypPeI~v~~~-~Vha~~G~~a~L~CiV~A~P-~a   67 (70)
                      .|.+.+.+....+.+.+   .+..+|.|.+..+ .+...+|..++|.|.+.+.| .+
T Consensus        88 ~C~a~n~~~~~~~~~~~~~~~~~~~p~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~p  144 (323)
T 2wqr_A           88 TCQVTYQGHTFEDSTKKCADSNPRGVSAYLSRPSPFDLFIRKSPTITCLVVDLAPSK  144 (323)
T ss_dssp             EEEEEETTEEEEEEECCCCCSSGGGCEEEECCCCHHHHHTSSCCEEEEEEEEECCCS
T ss_pred             EEEEEeCCCCcceeeecCCCCCCCCCEEEEcCCCHHHhccCCeEEEEEEEeccCCCC
Confidence            48888777666655543   2345677766533 33456899999999999974 44

>2e6q_A Obscurin-like protein 1; IG-like domain, structural genomics, NPPSFA, national project on protein structural and functional analyses; NMR {Homo sapiens}

Probab=91.24  E-value=0.28  Score=30.21  Aligned_cols=28  Identities=11%  Similarity=-0.044  Sum_probs=21.8

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |.|..+-+-+...+|+++.|.|.|.+.|
T Consensus         9 ~~~~~~l~d~~v~eG~~a~f~C~vs~~p   36 (112)
T 2e6q_A            9 ARLVAGLEDVQVYDGEDAVFSLDLSTII   36 (112)
T ss_dssp             CCEEECCCCEEEETTCEEEEEEEESSCC
T ss_pred             cEEecCCCCeEEcCCCcEEEEEEECCCC
Confidence            4455555567889999999999999833

>1sq2_N Novel antigen receptor; immunoglobulin fold, protein-protein complex, hydrolase/immune system complex; 1.45A {Ginglymostoma cirratum} SCOP: b.1.1.1 PDB: 1t6v_N

Probab=91.22  E-value=0.3  Score=28.79  Aligned_cols=26  Identities=12%  Similarity=0.293  Sum_probs=20.5

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |....+.+.+.+|+.++|.|.+.+.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~~   28 (113)
T 1sq2_N            3 VDQTPRSVTKETGESLTINCVLRDAS   28 (113)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECSCS
T ss_pred             eEeCCccEEEecCCCEEEEEEECCCc
Confidence            34445567778999999999998776

>3zyj_A Leucine-rich repeat-containing protein 4C; cell adhesion, synapse; HET: NAG BMA MAN; 3.25A {Homo sapiens}

Probab=91.04  E-value=0.098  Score=37.16  Aligned_cols=33  Identities=21%  Similarity=0.235  Sum_probs=28.2

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++|.|....+.+...+|..++|.|.+ +.|.+.|
T Consensus       340 ~~P~i~~~~~~~~v~~G~~v~L~C~~-~~p~p~i  372 (440)
T 3zyj_A          340 YAPVIVEPPADLNVTEGMAAELKCRA-STSLTSV  372 (440)
T ss_dssp             CCCCEEECCCCEEECTTSCCEECCEE-SSTTSEE
T ss_pred             CCCcccccccceeeccCceEEEEeec-CCCCCce
Confidence            47999988888999999999999999 5687754

>1uct_A Immunoglobulin alpha FC receptor; beta stands, immune system; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1ovz_A* 1ow0_C*

Probab=90.99  E-value=0.094  Score=34.06  Aligned_cols=32  Identities=13%  Similarity=0.004  Sum_probs=24.9

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +..+|.|++..+. ...+|..++|.|.+.+ |.+
T Consensus         6 ~~~~P~i~~~p~~-~v~~G~~vtL~C~~~~-~~~   37 (218)
T 1uct_A            6 DFPMPFISAKSSP-VIPLDGSVKIQCQAIR-EAY   37 (218)
T ss_dssp             GSCCCCEEESSCS-EEETTCCEEEEECCCT-TCS
T ss_pred             CCCCCEEEecCCC-ccCCCCCEEEEEEcCC-CCC
Confidence            4668999987664 4578999999999876 443

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=90.97  E-value=0.31  Score=32.41  Aligned_cols=39  Identities=10%  Similarity=0.083  Sum_probs=28.1

Q ss_pred             eeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         26 VRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        26 vs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+..+.|.|..   +|.|.+..+. ....|..++|.|.+.+.|
T Consensus        88 ~S~~~~L~V~~~~~~P~i~~~p~~-~v~~G~~vtL~C~~~~~~  129 (242)
T 1p6f_A           88 PSNLLDLVVTEMYDTPTLSVHPGP-EVISGEKVTFYCRLDTAT  129 (242)
T ss_dssp             CCCCEEEEEECCSCCCEEEEESCS-EEETTCEEEEEEECTTSC
T ss_pred             CCcceEEEeecccCCCceEccCCC-ccCCCCcEEEEEecCCCC
Confidence            35567777763   7899876543 346799999999987654

>2dav_A SLOW MYBP-C, myosin-binding protein C, SLOW-type; IG domain, structural genomics, NPPSFA; NMR {Homo sapiens} SCOP: b.1.1.4

Probab=90.86  E-value=0.1  Score=33.22  Aligned_cols=25  Identities=16%  Similarity=0.073  Sum_probs=20.3

Q ss_pred             ceEEeccCCcEEEEEEEeee---CCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAE---PHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~---P~a~V   69 (70)
                      +.+...+|+.++|.|.|.+.   |.+.|
T Consensus        15 ~~v~V~eG~~v~L~C~v~g~~~~p~P~V   42 (126)
T 2dav_A           15 QGGTVKVGEDITFIAKVKAEDLLRKPTI   42 (126)
T ss_dssp             CCCEEETTCCEEEEEEEECCCSSSCCEE
T ss_pred             CCeEEeCCCCEEEEEEEeccCCCCCCcE
Confidence            45566889999999999985   77765

>1moe_A Anti-CEA MAB T84.66; anti carcinoembryonic antigen, diabody, dimer, SCFV, variable domain, immune system; 2.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.1

Probab=90.85  E-value=0.21  Score=31.49  Aligned_cols=27  Identities=11%  Similarity=0.122  Sum_probs=21.7

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|....+.+.+.+|..++|.|.+.+.|
T Consensus         3 ~v~~~p~~~~v~~G~~v~L~C~~~~~~   29 (240)
T 1moe_A            3 VLTQSPASLAVSLGQRATMSCRAGESV   29 (240)
T ss_dssp             CEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             ceEeeCCeEEecCCCCEEEEEeCCCcc
Confidence            344555567778999999999999988

>3sbw_C Programmed cell death 1 ligand 1; PD-1, PD-L1, B7-H1, programmed death-1 ligand 1, complex, costimulatory, immune system; 2.28A {Homo sapiens} PDB: 3fn3_A 3bis_A 3bik_A

Probab=90.82  E-value=0.15  Score=31.45  Aligned_cols=26  Identities=15%  Similarity=0.195  Sum_probs=21.0

Q ss_pred             EecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         42 VERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        42 v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .+...|.+.+|..+.|.|.+.+.|..
T Consensus         6 ~p~~~v~~~~G~~v~L~C~~~~~p~~   31 (222)
T 3sbw_C            6 VPKDLYVVEYGSNMTIECKFPVEKQL   31 (222)
T ss_dssp             CSCSEEEEETTSCEEEEEECCCCSSC
T ss_pred             cCCccEEEEcCCcEEEEeEecCCCCC
Confidence            34556778899999999999988854

>3bkj_L WO2 IGG2A FAB fragment light chain kappa; abeta, FAB, WO2, alzheimer'S disease, immunotherapies, APP, immune system; 1.59A {Mus musculus} PDB: 3bkc_L 3bkm_L 2zuq_B* 1h3p_L

Probab=90.79  E-value=0.31  Score=31.38  Aligned_cols=29  Identities=10%  Similarity=-0.015  Sum_probs=24.5

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.|....+.+.+.+|..++|.|.+.+.|
T Consensus        34 ~~~v~~~p~~~~v~~G~~v~L~C~~~~~~   62 (252)
T 3bkj_L           34 DVLMTQTPLSLPVNLGEQASISCRSSQSI   62 (252)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             ccEEEeCCceEEEeCCCcEEEEEEcCCCc
Confidence            56677766778889999999999999887

>1pko_A Myelin oligodendrocyte glycoprotein; IGV-domain, immune system; 1.45A {Rattus norvegicus} SCOP: b.1.1.1 PDB: 1pkq_E 3csp_A 1py9_A

Probab=90.73  E-value=0.28  Score=29.24  Aligned_cols=24  Identities=21%  Similarity=0.246  Sum_probs=19.1

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +...+.+.+|..++|.|.+.+.|.
T Consensus        12 ~~~~v~~~~G~~v~L~C~~~~~~~   35 (139)
T 1pko_A           12 PGHPIRALVGDEAELPCRISPGKN   35 (139)
T ss_dssp             CSSCEEEETTSCEEEEEEEESCCC
T ss_pred             CCCCEEEEeCCCEEEeeEccCCCC
Confidence            344577889999999999987653

>2id5_A Lingo-1, leucine rich repeat neuronal 6A; CNS-specific LRR-IG containing, ligand binding protein,membr protein; HET: NAG MAN; 2.70A {Homo sapiens}

Probab=90.62  E-value=0.062  Score=38.16  Aligned_cols=32  Identities=25%  Similarity=0.363  Sum_probs=24.7

Q ss_pred             CeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|... .+.+.+..|..++|.|.+.+.|.|.|
T Consensus       385 P~i~~~~~~~~~v~~G~~v~l~C~~~g~P~p~i  417 (477)
T 2id5_A          385 ARIRDRKAQQVFVDEGHTVQFVCRADGDPPPAI  417 (477)
T ss_dssp             EEESCCSCEEEEEETTCCEEECCCEEEESCCEE
T ss_pred             ccccccccccEEEeCCCeEEEEEeccccCCCEE
Confidence            444333 35677789999999999999999865

>2ny1_B T-cell surface glycoprotein CD4; HIV, GP120, CD4, viral protein-immune system compl; HET: NAG SUC; 1.99A {Homo sapiens} SCOP: b.1.1.1 b.1.1.3 PDB: 2nxz_B* 2ny0_B* 2nxy_B* 2ny2_B* 2ny3_B* 2ny4_B* 2ny5_C* 2ny6_B* 3jwd_C* 3jwo_C* 1g9m_C* 1g9n_C* 1gc1_C* 1rzj_C* 1rzk_C* 3o2d_A 3cd4_A 3lqa_C* 2b4c_C* 2qad_B* ...

Probab=90.52  E-value=0.083  Score=32.20  Aligned_cols=26  Identities=15%  Similarity=0.245  Sum_probs=21.9

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.|.+.+|..++|.|.+.+.|.+.|
T Consensus         2 ~~~v~~~~G~~v~L~C~~~~~~~~~i   27 (184)
T 2ny1_B            2 KKVVLGKKGDTVELTCTASQKKSIQF   27 (184)
T ss_dssp             CCEEEEETTSCEEECCBCSSSSCCCE
T ss_pred             CCcEEEeCCCCEEEEEEEcCCCceEE
Confidence            35678899999999999998887764

>3juy_B 3B3 single chain variant HIV-1 antibody; envelope protein GP120, broadly neutralizing antibody, 3B3 single chain variable fragment, immune system; 2.50A {Homo sapiens}

Probab=90.47  E-value=0.3  Score=31.55  Aligned_cols=28  Identities=11%  Similarity=0.025  Sum_probs=23.1

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      +|.+......+.+.+|..++|.|.+.+.
T Consensus         6 ~~~~~~~~~~~~v~~G~~v~L~C~~~~~   33 (256)
T 3juy_B            6 HQVQLVQSGAEVKKPGASVKVSCQASGY   33 (256)
T ss_dssp             -CCEEEECCCEEECTTCCEEEEEEEESS
T ss_pred             ceEEEEecCCceecCCCeEEEEEEeecc
Confidence            5666777778888999999999999883

>1j05_L T84.66 antibody, anti-CEA MAB T84.66, light chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1qfw_L* 1qnz_L 3iy3_A 3iy4_A

Probab=90.41  E-value=0.37  Score=27.87  Aligned_cols=26  Identities=12%  Similarity=0.151  Sum_probs=20.4

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |....+.+.+.+|+.++|.|.+.+.|
T Consensus         4 v~q~p~~~~~~~G~~v~L~C~~~~~~   29 (111)
T 1j05_L            4 LTQSPASLAVSLGQRATMSCRAGESV   29 (111)
T ss_dssp             EEEECSEEECCTTSCEEEEEEESSCC
T ss_pred             EEEeCCEEEEeCCCCEEEEeecCCCc
Confidence            33444567889999999999998876

>2wbj_D OB TCR; transmembrane, immune response, T cell receptor, MHC II, MEM receptor, molecular mimicry, multiple sclerosis, immune SYS autoimmunity; HET: NAG BMA MAN; 3.00A {Homo sapiens}

Probab=90.33  E-value=0.21  Score=33.03  Aligned_cols=32  Identities=19%  Similarity=0.243  Sum_probs=25.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+.|..+.+.+.+.+|..++|.|.+.+.|.+.
T Consensus        24 ~~~v~~~p~~v~v~~G~~v~L~C~~~~~~~~~   55 (279)
T 2wbj_D           24 GAVVSQHPSWVISKSGTSVKIECRSLDFQATT   55 (279)
T ss_dssp             CCCEEEECSEEEEETTSCEEEEEEESSSCEEE
T ss_pred             cceEEeCCCeEEecCCCeEEEEEEeCCCCCCe
Confidence            35666666778889999999999998766543

>1b6u_A KIR2DL3, P58 killer cell inhibitory receptor; natural killer cell, HLA, major histocompatibility complex class I (MHC class I); 3.00A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=90.25  E-value=0.19  Score=34.05  Aligned_cols=39  Identities=10%  Similarity=0.022  Sum_probs=28.5

Q ss_pred             eeeeEEEEeec---CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         26 VRRRRRRNQKN---LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        26 vs~~I~L~V~y---pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+..+.|.|..   +|.|.+.... ....|..++|.|.+.+.|
T Consensus        93 ~S~~~~L~V~~~~~~P~l~~~p~~-~V~~G~~vtL~C~~~~~~  134 (257)
T 1b6u_A           93 PSDPLDIVITGLYEKPSLSAQPGP-TVLAGESVTLSCSSRSSY  134 (257)
T ss_dssp             CCCCEEEEEECSSCCCEEECSSCT-TCBTTCEEEEEEECSSCC
T ss_pred             cCCCEEEecccCCCCcceEccCCC-ccCCCCEEEEEEeCCCCC
Confidence            45666777764   5788876542 347899999999998765

>1eeq_A Kappa-4 immunoglobulin (light chain); protein stability, hydrogen bonds, immune system; 1.50A {Homo sapiens} SCOP: b.1.1.1 PDB: 1eeu_A 1lve_A 2lve_A 3lve_A 5lve_A 4lve_A 1efq_A 1qac_A 1ek3_A 2imm_A 1mvu_A 2ap2_A 1ap2_A 3bd3_A* 3bd4_A* 3bd5_A* 2imn_A 3dus_A* 3duu_A* 3dv4_A* ...

Probab=90.08  E-value=0.45  Score=27.73  Aligned_cols=26  Identities=12%  Similarity=0.118  Sum_probs=20.3

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |....+.+.+.+|..++|.|.+.+.|
T Consensus         4 v~q~p~~v~v~~G~~v~L~C~~~~~~   29 (114)
T 1eeq_A            4 LTQSPDSLAVSLGERATINCKSSQSV   29 (114)
T ss_dssp             EEEECSEEEECTTSCEEEEEEESSCC
T ss_pred             eEecCCeEEEcCCCeEEEEEEcCCCc
Confidence            33444567788999999999998776

>2coq_A NEW antigen receptor variable domain; IG VNAR, natural TYPE2, immune system; 2.10A {Orectolobus maculatus}

Probab=90.05  E-value=0.43  Score=27.62  Aligned_cols=25  Identities=8%  Similarity=0.274  Sum_probs=19.7

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      |....+.+.+.+|..++|.|.+.+.
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~~~~~   27 (108)
T 2coq_A            3 VDQTPRIATKETGESLTINCVLRDT   27 (108)
T ss_dssp             EEEECSEEEECTTCCEEEEEEECCS
T ss_pred             eEeCCceEEEcCCCCEEEEeEeCCC
Confidence            4444556778899999999999865

>2eo1_A OBSCN protein, cDNA FLJ14124 FIS, clone mamma1002498; beta-sandwich, IG-fold, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.96  E-value=0.091  Score=29.61  Aligned_cols=24  Identities=25%  Similarity=0.370  Sum_probs=19.5

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-+.+.+|..++|.|.+. .|.+.|
T Consensus        19 ~~~~v~~G~~v~L~C~~~-~p~~~v   42 (102)
T 2eo1_A           19 REVQAEAGASATLSCEVA-QAQTEV   42 (102)
T ss_dssp             EEEEEETTCCEEECCBCS-CSSSCC
T ss_pred             ccEEEeCCCcEEEEEEec-CCCCce
Confidence            345678899999999998 887765

>2yc1_B Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_B 3lh2_L 3h3p_L 3lhp_L

Probab=89.92  E-value=0.46  Score=30.19  Aligned_cols=31  Identities=13%  Similarity=0.109  Sum_probs=23.5

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .+.|+.+.+.+.+.+|..++|.|.+...+..
T Consensus        16 ~~~v~q~p~~v~v~~G~sVtL~C~~s~~~~~   46 (146)
T 2yc1_B           16 EIVLTQSPATLSVSPGERATLSCRASQSVRS   46 (146)
T ss_dssp             CCCEEEECSEEEECTTSCEEEEEEESSCCTT
T ss_pred             cceEEEeCCEEEEecCCCEEEEEEECCCCCC
Confidence            3455555566778899999999999887644

>1h5b_A Murine T cell receptor (TCR) valpha domain; immune response, immunoglobulin fold; 1.85A {Mus musculus} SCOP: b.1.1.1 PDB: 1h5b_C 1h5b_B

Probab=89.76  E-value=0.45  Score=27.57  Aligned_cols=25  Identities=24%  Similarity=0.250  Sum_probs=19.2

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ....+.+.+.+|+.++|.|.+.+.+
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~   29 (113)
T 1h5b_A            5 EQSPSALSLHEGTDSALRCNFTTTM   29 (113)
T ss_dssp             EEECSEEEEETTCCEEEEEEESSCC
T ss_pred             EECCCEEEEecCCcEEEEEEECCCC
Confidence            3344566778999999999998754

>1nkr_A P58-CL42 KIR; inhibitory receptor, natural killer cells, immunological receptors, immunoglobulin fold; 1.70A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1m4k_A 1efx_D 2dli_A 2dl2_A 3h8n_A

Probab=89.71  E-value=0.32  Score=30.31  Aligned_cols=32  Identities=9%  Similarity=0.037  Sum_probs=23.0

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +.-+|.|++..+ ....+|..++|.|.+.. |.+
T Consensus         5 ~~~~P~i~~~p~-~~v~~G~~v~L~C~~~~-~~~   36 (201)
T 1nkr_A            5 VHRKPSLLAHPG-PLVKSEETVILQCWSDV-MFE   36 (201)
T ss_dssp             --CCCEEEEESC-SEEETTCCEEEEEEESS-CCS
T ss_pred             cCCCCeEEEEcC-CccCCCCcEEEEEeccC-CCC
Confidence            456788988766 44578999999999874 443

>1svz_A Immunoglobulin;, single-chain FV fragment 1696; antibody-antigen complex, HIV inhibiting antibody; 1.89A {Mus musculus} PDB: 1jp5_A

Probab=89.64  E-value=0.41  Score=30.50  Aligned_cols=26  Identities=12%  Similarity=0.183  Sum_probs=21.1

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |....+.+.+.+|..++|.|.+.+.|
T Consensus         4 v~~~p~~~~v~~G~~v~L~C~~~~~~   29 (247)
T 1svz_A            4 MTQTPLYLPVSLGDQASISCRSSQTI   29 (247)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCC
T ss_pred             EEecCCeEEecCCCCEEEEEeCCCcc
Confidence            44444567778999999999999888

>3pv7_A B7-H6, IG-like domain-containing protein DKFZP686O24166/DKFZP686I21167; NK cell receptor, receptor-ligand complex, immune system; HET: NAG; 2.00A {Homo sapiens} PDB: 3pv6_A*

Probab=89.63  E-value=0.23  Score=31.63  Aligned_cols=23  Identities=4%  Similarity=0.014  Sum_probs=19.1

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+.+.+|..++|.|.+.+.|.+.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p~~~   34 (248)
T 3pv7_A           12 TQITPLNDNVTIFCNIFYSQPLN   34 (248)
T ss_dssp             EEEEETTSCEEECCEEEESSCCC
T ss_pred             CeEEeCCCCEEEeeEEecCCCcC
Confidence            44567899999999999988764

>1nez_G T-cell surface glycoprotein CD8 alpha chain; immune system; HET: NAG; 2.10A {Synthetic} SCOP: b.1.1.1 PDB: 1bqh_G* 3b9k_A* 2atp_A* 2arj_R

Probab=89.60  E-value=0.6  Score=28.64  Aligned_cols=29  Identities=24%  Similarity=0.361  Sum_probs=23.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ++.|+.....+.+.+|+.++|.|.+.+.+
T Consensus         4 ~~~v~Q~p~~~~v~~G~~vtL~C~~s~~~   32 (128)
T 1nez_G            4 APELRIFPKKMDAELGQKVDLVCEVLGSV   32 (128)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCC
T ss_pred             CCeeEECCCeEEEcCCCCEEEEEEeCccC
Confidence            56777766667788999999999997654

>2edn_A Myosin-binding protein C, fast-type; beta-sandwich, IG-fold, fast MYBP-C, C-protein, skeletal muscle fast isoform, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=89.59  E-value=0.12  Score=32.55  Aligned_cols=25  Identities=20%  Similarity=0.190  Sum_probs=20.1

Q ss_pred             ceEEeccCCcEEEEEEEeee---CCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAE---PHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~---P~a~V   69 (70)
                      +.|...+|..|+|.|.|.+.   |.|.|
T Consensus        20 ~~v~V~eG~~v~L~C~v~g~~~~p~P~V   47 (118)
T 2edn_A           20 DSVSVETGKDAVVVAKVNGKELPDKPTI   47 (118)
T ss_dssp             CCCEEETTSCEECCEEEETTTSSSCCCC
T ss_pred             CCeEEeCCCCEEEEEEEeccCCCCCCcE
Confidence            44556789999999999985   77776

>3o81_A Beta-2-microglobulin; IG-like C1-type (immunoglobulin-like) domain, histocompatibi antigen, MHC class I molecule from B21 chicken, immune SYST; 2.00A {Gallus gallus}

Probab=89.47  E-value=0.57  Score=29.21  Aligned_cols=35  Identities=17%  Similarity=0.208  Sum_probs=25.1

Q ss_pred             EeecCCeEEE-ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         33 NQKNLPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        33 ~V~ypPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ...-||.|.+ +++-.  ..|+.++|.|.+.++..+.|
T Consensus        20 ~~~~~P~V~v~~~~~~--~~g~~~~L~C~v~gFyP~~I   55 (119)
T 3o81_A           20 QADLTPKVQVYSRFPA--SAGTKNVLNCFAAGFHPPKI   55 (119)
T ss_dssp             -CCCSCEEEEEESSCC--CTTSCEEEEEEEEEESSSCC
T ss_pred             CCccCCceEEEcCCcc--cCCCcEEEEEEEecccCCCc
Confidence            4557999998 34332  35889999999999866543

>1ypz_F T-cell receptor gamma chain, beta-2-microglobulin; H2-T22 protein, T cell receptor delta, immune system; HET: NAG MAN FUC; 3.40A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=89.47  E-value=0.14  Score=33.09  Aligned_cols=40  Identities=10%  Similarity=0.086  Sum_probs=26.3

Q ss_pred             eeEEEEee---------cCCeEEEecce-EEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQK---------NLPEIEVERSW-VHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~---------ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ..+.|+|.         .||.+.+-.+. .....|..++|.|.+.++ |.+
T Consensus       111 ~~~~L~V~~~~~~l~~~~~p~~~v~~p~~~~v~~g~~~~L~C~~~g~~P~~  161 (230)
T 1ypz_F          111 EGTKLIVIPSDKRLDADISPKPTIFLPSVAETNLHKTGTYLCLLEAFFPDV  161 (230)
T ss_dssp             SCEEEEEECCCTTCCSCCSCCCCEECCCHHHHHHHSCEEEEEEEEEESSCC
T ss_pred             CCEEEEEecccccCcccCCCCceEECCCchhhccCCcceEEEEEeeecCCC
Confidence            56788886         45655443221 112358999999999988 763

>2p1y_A Bispecific alpha/beta TCR; autoimmunity, immunoglobulin fold, diabody, immune system; 2.42A {Mus musculus} PDB: 1bwm_A

Probab=89.44  E-value=0.36  Score=30.37  Aligned_cols=29  Identities=14%  Similarity=0.162  Sum_probs=22.0

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |....+.+.+.+|..++|.|. .+.|.+.|
T Consensus         3 v~q~p~~~~v~~G~~v~L~C~-~~~~~~~i   31 (238)
T 2p1y_A            3 VTQSPRNKVAVTGGKVTLSCN-QTNNHNNM   31 (238)
T ss_dssp             EEEECSEEEEETTCCEEEEEE-ECSCCSEE
T ss_pred             ceECccceEEeCCCEEEEEee-cCCCCccE
Confidence            455556677889999999999 67776643

>2jju_A Signal regulatory protein beta-1; immunoglobulin domain, immunoglobulin superfamily, immune system, transmembrane, paired receptor; 1.19A {Homo sapiens} PDB: 2jjv_A 2uv3_A* 2jjt_A* 2jjs_A* 2jjw_A

Probab=89.40  E-value=0.23  Score=29.73  Aligned_cols=24  Identities=25%  Similarity=0.331  Sum_probs=19.0

Q ss_pred             ceEEeccCCcEEEEEEEeee-CCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAE-PHAD   68 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~-P~a~   68 (70)
                      +.+.+.+|..++|.|.+.+. |.+.
T Consensus        11 ~~~~v~~G~~vtL~C~~~~~~~~~~   35 (127)
T 2jju_A           11 KSVSVAAGESATLRCAMTSLIPVGP   35 (127)
T ss_dssp             SEEEEETTSCEEECCEESCCCSCCC
T ss_pred             CeEEEeCCCCEEEEEEEeCCCCCCE
Confidence            46778899999999999875 4443

>2gjj_A A21 single-chain antibody fragment against ERBB2; IG family, SCFV, immune system; 2.10A {Mus musculus} PDB: 3h3b_C

Probab=89.28  E-value=0.33  Score=32.02  Aligned_cols=28  Identities=11%  Similarity=0.079  Sum_probs=22.6

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +.|....+.+.+.+|..++|.|.+.+.|
T Consensus         6 ~~v~q~p~~v~v~~G~~v~L~C~~~~~~   33 (264)
T 2gjj_A            6 IVLTQTPSSLPVSVGEKVTMTCKSSQTL   33 (264)
T ss_dssp             CCEEEECSEEEEETTCCEEEEEEESSCC
T ss_pred             cceEecCCeEEecCCCcEEEEeEcCCcc
Confidence            4555555677788999999999999887

>1i1c_A IGG2A, IG gamma-2A chain C region; FC, immune system; HET: NAG FUL BMA MAN FUC; 2.70A {Rattus norvegicus} SCOP: b.1.1.2 b.1.1.2 PDB: 1i1a_D*

Probab=89.04  E-value=0.17  Score=33.50  Aligned_cols=31  Identities=13%  Similarity=0.243  Sum_probs=21.9

Q ss_pred             CCeEEEecceEE--eccCCcEEEEEEEeee---CCC
Q psy15736         37 LPEIEVERSWVH--SGEGYEAQLVCIVHAE---PHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vh--a~~G~~a~L~CiV~A~---P~a   67 (70)
                      +|.|.+..+.+.  ..+|..++|.|.+.+.   |.+
T Consensus        15 ~P~v~~~pp~~~~~v~~G~~v~L~C~~~g~~~~P~~   50 (239)
T 1i1c_A           15 VSSVFIFPPKTKDVLGGGLTPKVTCVVVDISQNDPE   50 (239)
T ss_dssp             --CEEEECCCHHHHTTSSSCCEEEEEEEEECTTCCC
T ss_pred             CCEEEEECCChHHhcccCCcEEEEEEEecCccCCCC
Confidence            555555544444  4689999999999988   765

>3jts_B Beta-2-microglobulin; alpha helix, beta sheet, beta barrel, immune response, MHC I membrane, transmembrane, disease mutation; 2.80A {Homo sapiens}

Probab=88.99  E-value=0.72  Score=28.75  Aligned_cols=33  Identities=27%  Similarity=0.357  Sum_probs=24.3

Q ss_pred             eecCCeEEE-ecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         34 QKNLPEIEV-ERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        34 V~ypPeI~v-~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ..-||.|.+ +++-  ...|+.++|.|.+.++..+.
T Consensus        21 ~~~~P~V~v~~~~~--~~~g~~~~L~C~~~gFyP~~   54 (119)
T 3jts_B           21 IQRTPKIQVYSRHP--AENGKSNFLNCYVSGFHPSD   54 (119)
T ss_dssp             CCBCCEEEEEESSC--CCTTSCEEEEEEEEEEBSSC
T ss_pred             CccCCEEEEEccCc--ccCCCcEEEEEEEeCccCCC
Confidence            456999999 4432  24688999999999975553

>3jz7_A MCAR, CAR, coxsackievirus and adenovirus receptor homolog; cell adhesion molecule, immunoglobuline superfamily, alternative splicing, cell adhesion; 2.19A {Mus musculus} PDB: 3mj7_B* 2npl_X

Probab=88.94  E-value=0.14  Score=31.06  Aligned_cols=28  Identities=21%  Similarity=0.362  Sum_probs=21.4

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |..+.+.+.+.+|..++|.|.+.+.|..
T Consensus         3 i~~~~~~v~v~~G~~v~L~C~~~~~~~~   30 (214)
T 3jz7_A            3 ITTPEQRIEKAKGETAYLPCKFTLSPED   30 (214)
T ss_dssp             ---CEEEEEEETTSCEEECCBCCCCTTC
T ss_pred             eecCCceEEEecCCCEEEEEEEecCCCC
Confidence            4455677888999999999999998843

>1hxm_B Gamma-delta T-cell receptor; IG domain, TCR, GDTCR, immune system; 3.12A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2

Probab=88.85  E-value=0.54  Score=30.32  Aligned_cols=26  Identities=19%  Similarity=0.206  Sum_probs=20.8

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeee
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+....+.+.+.+|..++|.|.+.+.
T Consensus         3 ~v~q~p~~v~~~~G~~v~L~C~~~~~   28 (242)
T 1hxm_B            3 HLEQPQISSTKTLSKTARLECVVSGI   28 (242)
T ss_dssp             EEECCCSEEEEETTCCEEEEEEEESS
T ss_pred             ccCcCCceEEecCCCcEEEEEEeCCc
Confidence            44555567888999999999999875

>2x1w_L Vascular endothelial growth factor receptor 2; hormone-signaling protein complex, angiogenesis, glycoprotein, HOST-virus interaction, membrane; HET: NAG BMA; 2.70A {Homo sapiens} PDB: 2x1x_R*

Probab=88.78  E-value=0.15  Score=32.21  Aligned_cols=33  Identities=9%  Similarity=0.115  Sum_probs=22.2

Q ss_pred             cCCeEEEecceEEeccC--CcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEG--YEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G--~~a~L~CiV~A~P~a~V   69 (70)
                      |.|......+.|...+|  ..+.|.|.+.+ |.+.|
T Consensus         6 f~~~~~~~p~~v~v~eG~~~~v~L~C~~~~-p~~~v   40 (213)
T 2x1w_L            6 FIASVSDQHGVVYITENKNKTVVIPCLGSI-SNLNV   40 (213)
T ss_dssp             BCCC----CEEEEECCSTTCEEEECCCBSS-TTCCE
T ss_pred             ccccCcCCceEEEEecCCCccEEEeeccCC-CCcEE
Confidence            44444444467888899  99999999986 76654

>3udw_C Poliovirus receptor; PVR tigit IGSF signal transduction immunology, IGSF, cell SU receptor signalling, glycosylation, membrane protein; HET: NAG; 2.90A {Homo sapiens}

Probab=88.73  E-value=0.3  Score=27.43  Aligned_cols=21  Identities=19%  Similarity=0.226  Sum_probs=16.1

Q ss_pred             EEeccCCcEEEEEEEe-eeCCC
Q psy15736         47 VHSGEGYEAQLVCIVH-AEPHA   67 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~-A~P~a   67 (70)
                      +.+.+|..++|.|.+. ..|.+
T Consensus        10 v~~~~G~~v~L~C~~~~~~~~~   31 (118)
T 3udw_C           10 VPGFLGDSVTLPCYLQVPNMEV   31 (118)
T ss_dssp             EEEETTSCEEECCEEECCTTCC
T ss_pred             EEEeeCCcEEEEEEeECCCCCC
Confidence            6667899999999994 44443

>1x9q_A SCFV, 4M5.3 anti-fluorescein single chain antibody fragment; VERY high affinity, antibody binding, electrostatics, directed evolution; HET: FLU; 1.50A {Homo sapiens}

Probab=88.55  E-value=0.44  Score=31.13  Aligned_cols=30  Identities=10%  Similarity=0.008  Sum_probs=24.8

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      -.+.|....+.+.+.+|..++|.|.+.+.|
T Consensus        14 ~~~~v~~~p~~~~v~~G~~v~L~C~~~~~~   43 (268)
T 1x9q_A           14 SDVVMTQTPLSLPVSLGDQASISCRSSQSL   43 (268)
T ss_dssp             CCCCEEEECSEECCCTTCCEEEEEEESSCC
T ss_pred             ccceEEeeCCeEEecCCCCEEEEeEecCCc
Confidence            356677766778889999999999999887

>3moq_A NEW antigen receptor variable domain, P3(40) PEPT amyloid beta A4 protein; AB-ignar, AB-12Y-2, glycoprotein, membran protease inhibitor; 2.05A {Orectolobus maculatus} PDB: 2z8w_C 2z8v_C 1ves_A 1ver_A

Probab=88.52  E-value=0.65  Score=28.70  Aligned_cols=26  Identities=8%  Similarity=0.188  Sum_probs=21.5

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeee
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .|+.+...+...+|+.++|.|.+...
T Consensus         2 ~V~Q~p~~v~v~~G~svtL~C~~s~~   27 (126)
T 3moq_A            2 WVDQTPRTATKETGESLTINCVLRDA   27 (126)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESC
T ss_pred             ceEECCceEEEeCCCCEEEEEEeecC
Confidence            46666677888999999999999865

>3r4d_A CEA-related cell adhesion molecule 1, isoform 1/2; immunoglobulin, beta-sandwich, mceacam1A - immunoglobulin FO spike NTD - galectin-like beta-sandwich fold; HET: NAG; 3.10A {Mus musculus} PDB: 1l6z_A*

Probab=88.48  E-value=0.2  Score=30.59  Aligned_cols=29  Identities=10%  Similarity=-0.084  Sum_probs=21.1

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++...-+.+.+|..++|.|.+.+.|.+.|
T Consensus         3 ~i~~~~~~v~~G~~v~L~C~~~~~~~~~v   31 (208)
T 3r4d_A            3 TIEAVPPQVAEDNNVLLLVHNLPLALGAF   31 (208)
T ss_dssp             EEEEESSEEETTCCEEEEEECCCSSCSEE
T ss_pred             cccCccceeecCCcEEEEEeCCCCCceEE
Confidence            34444466778999999999877776543

>3tv3_L PGT128 light chain, IG lambda-2 chain C regions; FAB, HIV-1 neutralizing antibody, GP120, immune system; HET: PCA MAN GOL EPE; 1.29A {Homo sapiens} PDB: 3tyg_L* 3twc_L* 3tnm_L 2mcg_1 1mcw_M 1a8j_L 3mcg_1 1dcl_A 1mcb_A* 1mcc_A* 1mcd_A* 1mce_A* 1mcf_A* 1mch_A 1mci_A* 1mcj_A* 1mck_A 1mcl_A* 1mcn_A* 1mcq_A ...

Probab=88.33  E-value=0.26  Score=30.51  Aligned_cols=27  Identities=7%  Similarity=0.065  Sum_probs=19.7

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |..+. .+.+.+|..++|.|.+.  |.+.|
T Consensus         4 v~~~~-~~~v~~G~~v~L~C~~~--~~~~v   30 (211)
T 3tv3_L            4 LTQPP-SASGSPGQSITISCTGT--SNNFV   30 (211)
T ss_dssp             CBCCS-EEEECTTCEEEEEEECC--CSSCE
T ss_pred             EEeCc-eEEEcCCCCEEEEEEEC--CCCeE
Confidence            44444 56778899999999998  65543

>1zxq_A ICAM-2, intercellular adhesion molecule-2; immunoglobulin fold, cell adhesion, glycoprotein, transmembr; HET: NAG; 2.20A {Homo sapiens} SCOP: b.1.1.3 b.1.1.4

Probab=88.25  E-value=0.5  Score=32.34  Aligned_cols=50  Identities=12%  Similarity=0.134  Sum_probs=35.0

Q ss_pred             cCcCCCccceeeeEEEEeecCCe---EEEecceEEeccCCcEEEEEEEee-eCCCC
Q psy15736         17 EEPEKDKEEVRRRRRRNQKNLPE---IEVERSWVHSGEGYEAQLVCIVHA-EPHAD   68 (70)
Q Consensus        17 ~~~~~~~~pvs~~I~L~V~ypPe---I~v~~~~Vha~~G~~a~L~CiV~A-~P~a~   68 (70)
                      |-..-.+..-.+.+.|.|-.+|+   |+....|  ..+|++.+|.|.|++ +|.+.
T Consensus        67 C~~~c~~~~~~~~~~itVy~~P~~v~i~~~p~~--~~~G~~~tL~C~v~~v~P~~~  120 (192)
T 1zxq_A           67 CHFTCSGKQESMNSNVSVYQPPRQVILTLQPTL--VAVGKSFTIECRVPTVEPLDS  120 (192)
T ss_dssp             EEEEETTEEEEEEEEEEECBCCCCCEEEEESSE--ECTTSEEEEEEEECSCBCGGG
T ss_pred             EEEECCCcceEEEEEEEEEeCCCCceEccCCcc--ccCCCcEEEEEEeCCeECCCC
Confidence            33444455667899999998884   3332345  467999999999995 77654

>1xt5_A Variable region-containing chitin-binding protein 3; innate immunity, VCBP, primordial antigen receptor, florida lancelet, amphioxus; 1.15A {Branchiostoma floridae}

Probab=88.22  E-value=0.34  Score=28.34  Aligned_cols=21  Identities=19%  Similarity=0.227  Sum_probs=17.1

Q ss_pred             ecceEEeccCCcEEEEEEEee
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      +.+.+.+.+|..++|.|.+..
T Consensus        10 ~~~~v~v~~G~~v~L~C~~~~   30 (135)
T 1xt5_A           10 THTEVEVHAGGTVELPCSYQL   30 (135)
T ss_dssp             SCSEEEEETTSCEEECCEEEE
T ss_pred             CCceEEEeCCCCEEEeeEeec
Confidence            345677889999999999864

>1q0x_L FAB 9B1, light chain; anti-morphine antibody, FAB fragment, immune system; HET: PG4; 1.60A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1q0y_L* 1ngp_L* 1ngq_L 3ks0_L* 1gig_L 2vir_A 2vis_A* 2vit_A 1sm3_L 4a6y_L 1ind_L* 1ine_L* 1yuh_L* 2zpk_L 3rhw_K* 3ri5_K* 3ria_K* 3rif_K* 1mfe_L* 1mfb_L* ...

Probab=88.14  E-value=0.58  Score=28.90  Aligned_cols=22  Identities=18%  Similarity=0.235  Sum_probs=18.3

Q ss_pred             ceEEeccCCcEEEEEEEeeeCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +.+.+.+|..++|.|.+.+.|.
T Consensus         8 ~~~~v~~G~~v~L~C~~~~~~~   29 (212)
T 1q0x_L            8 SALTTSPGETVTLTCRSSTGAV   29 (212)
T ss_dssp             SEEEECTTCCEEEEEEESSSCC
T ss_pred             CeEeecCCCCEEEEEEeccccc
Confidence            3556688999999999999873

>1jbj_A CD3 epsilon and gamma ectodomain fragment complex; beta-sheet, C2-SET immunoglobulin superfamily, H-bonded G strand PAIR, single-chain; NMR {Mus musculus} SCOP: b.1.1.4 b.1.1.4 PDB: 1xmw_A

Probab=88.06  E-value=0.1  Score=32.67  Aligned_cols=17  Identities=12%  Similarity=0.067  Sum_probs=14.2

Q ss_pred             ccCCcEEEEEEEeeeCCCCC
Q psy15736         50 GEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+|..++|.|.+   |.+.|
T Consensus       120 ~~G~~v~l~C~~---p~p~i  136 (186)
T 1jbj_A          120 RGDGSVLLTCGL---TDKTI  136 (186)
T ss_dssp             SSSCEEEEECSS---SCSCE
T ss_pred             CCCCeEEEEeeC---CCCeE
Confidence            489999999998   77654

>4ei6_B Vbeta16 XV19 type II natural killer T cell recept variable domain, human constant...; natural killer T cell receptor, immune system; 1.60A {Mus musculus} PDB: 4ei5_D 4elk_B 4elm_F* 2esv_E 3ffc_E 3utt_E 3utp_E* 3uts_E 3qjf_B 3qjh_B 3qiw_D* 3qiu_D

Probab=88.05  E-value=0.43  Score=30.24  Aligned_cols=30  Identities=20%  Similarity=0.132  Sum_probs=22.6

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      +.|..+.+.+.+.+|+.++|.| ..+.|.+.
T Consensus         3 ~~v~~~p~~v~v~~G~~v~L~C-~~~~~~~~   32 (245)
T 4ei6_B            3 PKVLQIPSHQIIDMGQMVTLNC-DPVSNHLY   32 (245)
T ss_dssp             CCCEEECSEEEEETTCCEEEEE-ECCTTCCE
T ss_pred             cceEeCCceEEecCCCCEEEEE-EcCCCCCE
Confidence            4566666778889999999999 55666544

>1dlf_L Anti-dansyl immunoglobulin IGG2A(S); FV fragment; 1.45A {Mus musculus} SCOP: b.1.1.1 PDB: 1wz1_L* 2dlf_L 1maj_A 1mak_A 1ktr_L 2cju_L* 2uud_K* 1dsf_L 3nn8_B 1n4x_L 1bfv_L* 1cfv_L* 2bfv_L* 1wt5_C

Probab=87.88  E-value=0.72  Score=26.75  Aligned_cols=25  Identities=12%  Similarity=0.085  Sum_probs=19.5

Q ss_pred             EEecceEEeccCCcEEEEEEEeeeC
Q psy15736         41 EVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        41 ~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ....+.+.+.+|..++|.|.+...+
T Consensus         5 ~q~p~~~~v~~G~~v~L~C~~~~~~   29 (113)
T 1dlf_L            5 TQTPLSLPVSLGNQASISCRSSQSL   29 (113)
T ss_dssp             EEECSEEEECTTCCEEEEEEESSCC
T ss_pred             EEeCCEEEEcCCCCEEEEEEccccc
Confidence            3333467788999999999998766

>2d9c_A Signal-regulatory protein beta-1; beta-sandwich, SIRP-beta-1, CD172B antigen, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=87.86  E-value=0.41  Score=28.67  Aligned_cols=21  Identities=24%  Similarity=0.298  Sum_probs=17.4

Q ss_pred             cceEEeccCCcEEEEEEEeee
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      ...+.+.+|+.++|.|.+...
T Consensus        15 p~~~~v~~G~~v~L~C~~~~~   35 (136)
T 2d9c_A           15 EKSVSVAAGESATLRCAMTSL   35 (136)
T ss_dssp             CSEEEEETTSCEEECCEESCC
T ss_pred             CcEEEEcCCCCEEEEEEEcCC
Confidence            345777889999999999875

>4hwn_A FC receptor-like A; FCRLA, FCRL, IG-C2 domain, IG superfamily, immune system, ST genomics, PSI-biology; 2.01A {Homo sapiens}

Probab=87.77  E-value=0.38  Score=28.32  Aligned_cols=31  Identities=16%  Similarity=0.110  Sum_probs=20.7

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      .-+|.|++..+.+ ...|..++|.|.+...|.
T Consensus         6 ~~kP~l~~~p~~~-v~~G~~VtL~C~~~~~~~   36 (108)
T 4hwn_A            6 FPAPILRAVPSAE-PQAGSPMTLSCQTKLPLQ   36 (108)
T ss_dssp             CCCCEEEEESCSS-CBTTCCEEEEEEC-----
T ss_pred             CCCCEEEecCCCc-CCCCCcEEEEEcccCCCC
Confidence            3468998887653 357999999999987654

>4fmk_A Poliovirus receptor-related protein 2; immunoglobulin-like domain, IG domain, viral entry receptor, adhesion; HET: NAG BMA MAN FUC; 2.56A {Mus musculus} PDB: 4fn0_A* 4fs0_A*

Probab=87.53  E-value=2.5  Score=25.25  Aligned_cols=52  Identities=21%  Similarity=0.090  Sum_probs=38.0

Q ss_pred             cCcCCC-ccceeeeEEEEeecCCeEEEecceEEeccCCcEEEEEEEee-eCCCC
Q psy15736         17 EEPEKD-KEEVRRRRRRNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHAD   68 (70)
Q Consensus        17 ~~~~~~-~~pvs~~I~L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~   68 (70)
                      |.+.+. +........+.+..+|.+....+......|..+.|.|.+.+ .|.+.
T Consensus       100 C~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~c~~~~~~P~~~  153 (225)
T 4fmk_A          100 CEFATFPNGTRRGVTWLRVIAQPENHAEAQEVTIGPQSVAVARCVSTGGRPPAR  153 (225)
T ss_dssp             EEEEEETTEEEEEEEEEEEEBCCEEEEEECCBCCSSSCEEEEEEEEEEEBSCCE
T ss_pred             EEEEeCCCcceeeeeeeeeecCCceeecccceeecceeeeeeeeeecCCCCCCE
Confidence            555443 44566677889999999998888888888888888877655 55543

>3q5y_A TCR N15 beta; IG, T cell receptor, antigen peptide/MHC, membrane, immune S; HET: EPE; 1.90A {Mus musculus} PDB: 1nfd_B* 3q5t_A

Probab=87.38  E-value=0.41  Score=30.36  Aligned_cols=28  Identities=18%  Similarity=0.279  Sum_probs=21.2

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|..+.+.+.+.+|..++|.|.+.+ |.+
T Consensus         4 ~v~~~p~~v~v~~G~~v~L~C~~~~-~~~   31 (240)
T 3q5y_A            4 GVVQSPRHIIKEKGGRSVLTCIPIS-GHS   31 (240)
T ss_dssp             CCEEECSEEEEETTCCEEEEEECCT-TCC
T ss_pred             ccccCcceeeecCCCcEEEEEEeCC-CCc
Confidence            4555556778889999999999875 444

>3umt_A SCFV heavy chain and light chain; stability engineering, anthrax, anti-BCLA antibody, immunoglobulin fold (VH and VL domains), antibody, immune S; HET: NHE; 1.80A {Mus musculus} PDB: 1xiw_D

Probab=87.31  E-value=0.72  Score=29.69  Aligned_cols=26  Identities=8%  Similarity=0.137  Sum_probs=19.1

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|..+.+ +.+.+|..++|.|.+.+.|
T Consensus         5 ~v~~~~~-~~v~~G~~v~L~C~~~~~~   30 (256)
T 3umt_A            5 QLQQSGL-ELVKPGASVKISCKTSGYT   30 (256)
T ss_dssp             EEEECCC-EEECTTCCEEEEEEEESSC
T ss_pred             eEEccCc-eEEcCCCCEEEEEEEeccc
Confidence            3444433 4478899999999999865

>1f3r_B FV antibody fragment; IG-fold, immuno complex, antibody-antigen, beta-turn, immune system; HET: NLE; NMR {Rattus norvegicus} SCOP: b.1.1.1 b.1.1.1

Probab=87.10  E-value=0.89  Score=29.44  Aligned_cols=25  Identities=12%  Similarity=0.025  Sum_probs=19.3

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |..+.+ +.+.+|..++|.|.+.+.|
T Consensus         4 ~~~p~~-~~v~~G~~v~L~C~~~g~p   28 (257)
T 1f3r_B            4 LLESGP-GLVRPSETLSLTCTVSGFS   28 (257)
T ss_dssp             EEEECC-SEECTTSEEEEEEEEESSC
T ss_pred             EECCCC-ccccCCceEEEEEEEeccc
Confidence            444444 4578899999999999886

>4gjt_B Poliovirus receptor-related protein 4; six-bladed -propeller, IGV-like fold, viral entry, MV-H, NEC BETA4/BETA5 groove; HET: NAG; 3.10A {Homo sapiens}

Probab=87.03  E-value=0.31  Score=28.96  Aligned_cols=22  Identities=23%  Similarity=0.324  Sum_probs=18.2

Q ss_pred             eEEeccCCcEEEEEEEeeeCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+|..|+|.|.+.+.|..
T Consensus         9 ~vtv~~G~~v~L~C~~~~~~~~   30 (123)
T 4gjt_B            9 VVTVVLGQDAKLPCFYRGDSGE   30 (123)
T ss_dssp             EEECCTTSEEEECCEECCCTTC
T ss_pred             EEEEEcCCCEEEEEEEeCCccC
Confidence            4667889999999999877654

>4fa8_A Secreted protein BARF1; immunoglobulin-like domains, 4-helix bundle fold, viral PROT cytokine complex; HET: NAG BMA; 2.20A {Human herpesvirus 4} PDB: 2ch8_A* 3uez_A* 4adf_A* 4adq_A*

Probab=86.97  E-value=0.14  Score=33.34  Aligned_cols=24  Identities=21%  Similarity=0.137  Sum_probs=19.6

Q ss_pred             eEEeccCCcEEEEEE---EeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCI---VHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~Ci---V~A~P~a~V   69 (70)
                      -|.+.+|.+++|.|.   |.+.|.+.|
T Consensus         2 ~Vta~~Ge~v~L~C~~~~v~~~p~~~V   28 (203)
T 4fa8_A            2 AVTAFLGERVTLTSYWRRVSLGPEIEV   28 (203)
T ss_dssp             CCEEETTCCEEEEEECSSTTCSTTSEE
T ss_pred             CeEEEcCCCEEEEeeeeccCCCCCcEE
Confidence            477899999999995   677787765

>1p6f_A NKP46, natural cytotoxicity triggering receptor 1; natural cytotoxicity receptor, NK cell receptor, immunoglobulin fold, immune system; 2.20A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=86.91  E-value=0.57  Score=31.12  Aligned_cols=29  Identities=14%  Similarity=0.103  Sum_probs=23.9

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEee
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      +.-+|.|++..++ ....|..++|.|.+..
T Consensus         4 ~~~kP~i~~~P~~-~v~~G~~VtL~C~~~~   32 (242)
T 1p6f_A            4 TLPKPFIWAEPHF-MVPKEKQVTICCQGNY   32 (242)
T ss_dssp             CCCCCEEEEESCS-EEETTCCEEEEEECCT
T ss_pred             CCCCCEEEeeCCC-ccCCCCcEEEEEeeCC
Confidence            3568999998877 5678999999999864

>1gsm_A Madcam-1, mucosal addressin cell adhesion molecule-1; cell adhesion protein, immunoglobulin fold, I-SET fold, cell adhesion glycoprotein; 1.9A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 1bqs_A*

Probab=86.80  E-value=0.55  Score=31.94  Aligned_cols=22  Identities=27%  Similarity=0.277  Sum_probs=18.6

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +.|.+..|..++|.|.+ +.|.+
T Consensus        15 ~~v~v~~G~sv~L~C~a-~~p~P   36 (210)
T 1gsm_A           15 PVVAVALGASRQLTCRL-ACADR   36 (210)
T ss_dssp             SEEEEETTCCEEEEEEE-CCSST
T ss_pred             CceEEeCCCCEEEEEEC-CCCCC
Confidence            44667789999999999 88877

>3gbl_A BETA2-microglobulin; immune response, immunoglobulin domain, MHC I, secreted, immune system; 2.10A {Ctenopharyngodon idella} SCOP: b.1.1.0

Probab=86.78  E-value=0.8  Score=27.14  Aligned_cols=30  Identities=27%  Similarity=0.410  Sum_probs=21.1

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      -||.|.+-.+- ....|+.++|.|.|.++-.
T Consensus         3 ~~P~V~v~~~~-~~~~~~~~~L~C~~~gFyP   32 (97)
T 3gbl_A            3 SSPKIQVYSHY-PGEYGKENTLICYVSGFHP   32 (97)
T ss_dssp             BCCEEEEEESS-CCCTTCCEEEEEEEECCBS
T ss_pred             CCCEEEEEcCC-cccCCCcEEEEEEEcceeC
Confidence            47888885331 1235889999999999733

>2z35_A T-cell receptor alpha-chain; immune receptor, immune system; 2.20A {Mus musculus} PDB: 2pxy_A 2z31_A 1ac6_A

Probab=86.76  E-value=0.41  Score=27.80  Aligned_cols=24  Identities=17%  Similarity=-0.000  Sum_probs=18.7

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      ...+.+.+|..++|.|.+...+..
T Consensus         7 p~~~~~~~G~~v~L~C~~~~~~~~   30 (112)
T 2z35_A            7 GGQVALSEEDFLTIHCNYSASGYP   30 (112)
T ss_dssp             CSEEEEETTCCEEECCEEECSSCC
T ss_pred             CCcEEEcCCCCEEEEEEECCCCCC
Confidence            445677889999999999876443

>2vol_A Murine IGG FC; FC, zinc, B30.2, nucleus, pryspry, cytoplasm, mouse IGG, zinc-finger, DNA-binding, RNA-binding, tripartite motif (TRIM) protein; HET: NAG MAN GAL FUC; 1.95A {Mus musculus} PDB: 3hkf_A 1i1a_C* 1cqk_A

Probab=86.72  E-value=0.4  Score=30.23  Aligned_cols=28  Identities=7%  Similarity=0.044  Sum_probs=20.3

Q ss_pred             CeEEEecceE-E-eccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWV-H-SGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~V-h-a~~G~~a~L~CiV~A~P   65 (70)
                      |.|.+..+.. . ..+|+.++|.|.+.+.|
T Consensus         2 p~v~~~~P~~~~~v~~G~~v~L~C~~~g~~   31 (207)
T 2vol_A            2 SSVFIFPPKPKDVLTITLTPKVTCVVVDIS   31 (207)
T ss_dssp             CEEEEECCCHHHHHSTTSCCEEEEEEEEEC
T ss_pred             CcEEEeCcChhhhhccCCceEEEEEEeCcc
Confidence            5555544331 2 57899999999999985

>1nfd_E H57 FAB; complex (immunoreceptor-immunoglobulin), complex (immunorece immunoglobulin) complex; HET: NAG NDG; 2.80A {Mus musculus} SCOP: b.1.1.1 b.1.1.2

Probab=86.71  E-value=0.38  Score=29.72  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=19.6

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+.+|..++|.|.+.+.|.+.|
T Consensus         8 ~~~v~~G~~v~L~C~~~~~~~~~v   31 (212)
T 1nfd_E            8 SASVTVGETVKITCSGDQLPKNFA   31 (212)
T ss_dssp             EEEEETTSCCCEEEEETTGGGSCC
T ss_pred             eEEEeCCCcEEEEEecCCCCCCeE
Confidence            455678999999999998887654

>1sy6_A T-cell surface glycoprotein CD3 gamma/epsilon chain; CD3 epsilon, OKT3 FAB, signaling protein/antibiotic complex; 2.10A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4 PDB: 2atp_E*

Probab=86.67  E-value=0.42  Score=30.52  Aligned_cols=18  Identities=22%  Similarity=0.296  Sum_probs=15.1

Q ss_pred             ccCCcEEEEEEEeeeCCCCC
Q psy15736         50 GEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ..|..++|.|.  +.|.+.|
T Consensus       126 ~~G~~v~L~C~--g~p~p~i  143 (204)
T 1sy6_A          126 ISGTTVILTCP--QYPGSEI  143 (204)
T ss_dssp             EETTEEEEECS--CCCSSCE
T ss_pred             ecCCcEEEEcC--CCCCCce
Confidence            37999999998  7888764

>3c5j_B MHC class II antigen; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 2q6w_B 1a6a_B* 1d5m_B* 1j8h_B* 1d5z_B* 1d5x_B* 1d6e_B* 2seb_B* 2wbj_B* 1ymm_B* 3l6f_B* 3s4s_B 3s5l_B 1fyt_B* 1seb_B 1bx2_B* 1zgl_B 1fv1_B 1h15_B* 1hqr_B ...

Probab=86.60  E-value=0.75  Score=29.67  Aligned_cols=34  Identities=21%  Similarity=0.264  Sum_probs=21.9

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ...-||.|.+-.+-.. ..|..++|.|.|.++ |+.
T Consensus        92 ~r~~~P~v~v~~~~~~-~~~~~~~L~C~~~gFyP~~  126 (190)
T 3c5j_B           92 QRRVHPQVTVYPAKTQ-PLQHHNLLVCSVSGFYPGS  126 (190)
T ss_dssp             TCCBCCEEEEEEEC------CCCEEEEEEEEEBSSC
T ss_pred             ccccCceEEEEeCCcc-ccCCceEEEEEEeeEECCc
Confidence            3456899998643322 357889999999996 543

>3u1s_H FAB PGT145 heavy chain; IGG, broadly neutralizing antibody, HIV-1 GP120, immune SYST; HET: TYS; 2.30A {Homo sapiens}

Probab=86.45  E-value=1  Score=29.86  Aligned_cols=38  Identities=18%  Similarity=0.066  Sum_probs=25.5

Q ss_pred             eEEEEee----cCCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         29 RRRRNQK----NLPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        29 ~I~L~V~----ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ...|+|.    .+|.|.+..+-.....|..++|.|.+.++.+
T Consensus       156 ~t~l~V~~~~~~~P~v~~~~~~~~~~~g~~~~l~C~~~~~~p  197 (267)
T 3u1s_H          156 GTAVTVSSASTKGPSVFPLAPSSKSTSGGTAALGCLVKDYFP  197 (267)
T ss_dssp             CEEEEECCCCCBCCEEEEECCCGGGEETTEEEEEEEEEEEBS
T ss_pred             CeEEEecCCCCCCCEEEEecCCcccCCCCcEEEEEEEeEEEC
Confidence            3456664    6888885333322346999999999998543

>2w59_A IGY FCU3-4; immunoglobulin, avian, immune system; HET: NAG MAN; 1.75A {Gallus gallus}

Probab=86.42  E-value=0.27  Score=31.86  Aligned_cols=30  Identities=17%  Similarity=0.017  Sum_probs=20.3

Q ss_pred             CCeEEEe-cceEEeccCCcEEEEEEEeee-CC
Q psy15736         37 LPEIEVE-RSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        37 pPeI~v~-~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      +|.|.+. .+.+...+|..++|.|.+.++ |.
T Consensus        12 ~P~v~~~~p~~~~v~~G~~v~L~C~~~g~~P~   43 (231)
T 2w59_A           12 PIQLYAIPPSPGELYISLDAKLRCLVVNLPSD   43 (231)
T ss_dssp             CCEEEEECCCHHHHHTSCCCEEEEEEEEESCC
T ss_pred             CCEEEEeCcChhhcccCCceEEEEEEeCccCC
Confidence            4555432 223345689999999999996 63

>1u3h_A T-cell receptor alpha-chain; complex, immune system; 2.42A {Mus musculus} SCOP: b.1.1.1 PDB: 1b88_A 1kj2_A* 1kb5_A 1d9k_A*

Probab=86.25  E-value=0.14  Score=29.86  Aligned_cols=25  Identities=20%  Similarity=0.073  Sum_probs=19.6

Q ss_pred             ceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.+.+.+|..++|.|.+.+.|.+.|
T Consensus         7 ~~v~v~~G~~v~L~C~~~~~~~~~v   31 (110)
T 1u3h_A            7 QSLTVWEGETAILNCSYENSAFDYF   31 (110)
Confidence            4566788999999999987765543

>1uvq_B HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_B* 1jk8_B* 2nna_B 1s9v_B 2iad_B 1muj_B* 1d9k_D* 1iak_B* 1jl4_B 1f3j_B* 2pxy_D 1k2d_B* 1u3h_D 2z31_D 3mbe_B* 1aqd_B 3pdo_B 3pgc_B 3pgd_B 1klu_B ...

Probab=86.14  E-value=0.79  Score=29.91  Aligned_cols=32  Identities=22%  Similarity=0.311  Sum_probs=19.1

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      ..-||.|.+-.+-.. ..|..++|.|.|.++ |+
T Consensus        91 r~~~P~V~v~~~~~~-~~~~~~~L~C~v~gFyP~  123 (198)
T 1uvq_B           91 RRVEPTVTISPSRTE-ALNHHNLLVCSVTDFYPG  123 (198)
T ss_dssp             CCBCCEEEEEEC---------CEEEEEEEEEBSS
T ss_pred             ccccceEEEEecCcc-cCCCCcEEEEEEeeEeCC
Confidence            346899998754332 357889999999996 54

>1fo0_B Protein (BM3.3 T cell receptor beta-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_B* 2ol3_B* 1kb5_B 1kj2_B*

Probab=86.12  E-value=0.84  Score=26.67  Aligned_cols=27  Identities=22%  Similarity=0.444  Sum_probs=19.9

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ++...+.+.+.+|+.++|.|.+...+.
T Consensus         4 v~q~p~~~~v~~G~~vtL~C~~~~~~~   30 (112)
T 1fo0_B            4 LEQNPRWRLVPRGQAVNLRCILKNSQY   30 (112)
T ss_dssp             EEEECSEEECCTTCCEEEEEEESCTTC
T ss_pred             EEeCCCeEEEecCCcEEEEEEeCCCCC
Confidence            444455677889999999999865443

>1zvo_C Myeloma immunoglobulin D delta; immunoglobulin fold, antibody, immune system; NMR {Homo sapiens}

Probab=85.76  E-value=0.86  Score=33.18  Aligned_cols=40  Identities=15%  Similarity=0.238  Sum_probs=27.0

Q ss_pred             eeEEEEee----cCCeEEEecce-EEeccCCcEEEEEEEeee-CCC
Q psy15736         28 RRRRRNQK----NLPEIEVERSW-VHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        28 ~~I~L~V~----ypPeI~v~~~~-Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      ..+.|+|.    -+|.|.+..+- .....|..++|.|.+.++ |.+
T Consensus       121 ~~~~L~V~~~~~~~P~i~~~~~~~~~~~~~~~v~L~C~~~g~~P~p  166 (512)
T 1zvo_C          121 QGTTVHVSSAPTKAPDVFPIISGCRHPKDNSPVVLACLITGYHPTS  166 (512)
T ss_pred             CceEEEecccCCcCCeEEeccCCcccccCCCeEEEEEEEEeeecCc
Confidence            55678887    36888744321 112247899999999998 764

>2cr3_A Basic fibroblast growth factor receptor 1; IG fold, FGFR1, BFGF-R, structural genomics, NPPSFA; NMR {Homo sapiens}

Probab=85.54  E-value=0.16  Score=28.76  Aligned_cols=22  Identities=18%  Similarity=0.137  Sum_probs=17.7

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      .+...+|..++|.|.+.+.| +.
T Consensus        12 ~~~v~~G~~v~L~C~~~g~p-p~   33 (99)
T 2cr3_A           12 SFLVHPGDLLQLRCRLRDDV-QS   33 (99)
T ss_dssp             ECCBCTTSCEEEECCCCSSC-CE
T ss_pred             CeEEeCCCcEEEEEEecCCC-Ce
Confidence            34457899999999999987 44

>2bnu_A TCR alpha chain, T-cell receptor alpha chain C region; superagonist peptide T-cell vaccines, transmembrane, immunoglobulin domain; 1.40A {Homo sapiens} PDB: 2bnq_D 2bnr_D 2f54_D 2pyf_A* 2pye_D* 2f53_D 2p5e_D* 2p5w_D* 3mv7_D 3mv8_D 3mv9_D 3utt_D 2cdg_A

Probab=85.51  E-value=1.3  Score=28.69  Aligned_cols=35  Identities=11%  Similarity=0.154  Sum_probs=0.0

Q ss_pred             EEEEee-----cCCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         30 RRRNQK-----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        30 I~L~V~-----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      ..|.|.     -+|.|.+..+     .+..++|.|.+.+ +|.+.|
T Consensus       107 t~L~V~~~~~~~~P~V~~~~~-----~~~~~~L~C~~~g~~P~p~v  147 (203)
T 2bnu_A          107 TSLIVHPYIQNPDPAVYQLRR-----SKSSDKSVCLFTDFDSQTNV  147 (203)
T ss_dssp             EEEEEECCCSSCCCEEEEECC-----SSSSSCEEEEEESCCTTCCC
T ss_pred             EEEEEeCCCCCCCCeEEecCC-----CCCCcEEEEEccccccCccc

>3ux9_B SCFV antibody; five helices, long loop connecting helix, hydrophobic intera cytokine-immune system complex; 2.80A {Homo sapiens}

Probab=85.39  E-value=0.47  Score=30.39  Aligned_cols=24  Identities=13%  Similarity=0.117  Sum_probs=18.7

Q ss_pred             eEEeccCCcEEEEEEEeee--CCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAE--PHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~--P~a~V   69 (70)
                      .+.+.+|..++|.|.+.+.  |.+.|
T Consensus        11 ~~~v~~G~~v~L~C~~~~~~~~~~~v   36 (256)
T 3ux9_B           11 SVSGAPGQRVTISCSGSSSNIGSNYV   36 (256)
T ss_dssp             EEEECTTCCEEEEEECCTTTTTTSCC
T ss_pred             cEEEcCCCcEEEEEecCCCCCCCceE
Confidence            3666889999999999886  55443

>1oaq_L Light chain; antibody, allergy, IGE, conformational diversity, multispecificity; 1.50A {Rattus rattus} SCOP: b.1.1.1 PDB: 1ocw_L 2bjm_L* 1oau_L* 1oar_L* 1oaz_L 1mfa_L* 1a6v_L* 1oax_L* 1oay_L* 1a6w_L* 1a6u_L 1dl7_L*

Probab=85.35  E-value=0.86  Score=26.79  Aligned_cols=25  Identities=16%  Similarity=0.332  Sum_probs=19.2

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |+.+.+ +.+.+|..++|.|.+...+
T Consensus         4 v~q~~~-~~~~~G~~v~L~C~~~~~~   28 (120)
T 1oaq_L            4 VTQESA-LTTSPGETVTLTCRSSTGA   28 (120)
T ss_dssp             EEECSE-EEECTTCEEEEEEEETTBC
T ss_pred             EEcCCc-EEEcCCCCEEEEEEeCCCc
Confidence            334444 7788999999999998765

>3gkz_A Anti-methamphetamine single chain FV; therapeutic antibody, MDMA, IGG, immune system; HET: B40; 1.90A {Mus musculus} PDB: 3gm0_A* 1rvf_L 3ab0_C 2a0l_C 3iy5_A

Probab=85.35  E-value=0.94  Score=29.04  Aligned_cols=21  Identities=14%  Similarity=0.128  Sum_probs=17.1

Q ss_pred             ceEEeccCCcEEEEEEEeeeC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +.+.+.+|..++|.|.+.+.|
T Consensus        16 ~~~~v~~G~~v~L~C~~~~~~   36 (257)
T 3gkz_A           16 GPSLVKPSQTLSLTCSVTGDS   36 (257)
T ss_dssp             CCSEECTTCCEEEEEEEEESC
T ss_pred             CCeEEcCCCcEEEEEEEEccc
Confidence            345578999999999999854

>3b5h_A Cervical EMMPRIN, HAB18G/CD147; IG-like domain, cell invasion; 2.80A {Homo sapiens} SCOP: b.1.1.4 b.1.1.4

Probab=84.99  E-value=1.4  Score=26.45  Aligned_cols=18  Identities=17%  Similarity=0.324  Sum_probs=16.3

Q ss_pred             ccCCcEEEEEEEeeeCCC
Q psy15736         50 GEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~P~a   67 (70)
                      .+|..++|.|.+.+.|.+
T Consensus        11 ~~G~~v~l~C~~~~~~~p   28 (184)
T 3b5h_A           11 DLGSKILLTCSLNDSATE   28 (184)
T ss_dssp             EETTEEEEEEEEESCSSC
T ss_pred             ecCCCEEEEEECCCCCCC
Confidence            679999999999998877

>3c5j_A HLA class II histocompatibility antigen, DR alpha; HLA, MHC class II, glycoprotein, immune response, membrane, transmembrane, GTP-binding, methylation; HET: NAG; 1.80A {Homo sapiens} PDB: 1d5x_A* 1d5z_A* 1d6e_A* 1d5m_A 1fyt_A* 1hqr_A 1j8h_A* 1r5i_A 1seb_A 1zgl_A 2seb_A* 1fv1_A* 2ipk_A* 3pdo_A 3pgc_A 3pgd_A 1ymm_A* 1aqd_A 2g9h_A* 1h15_A ...

Probab=84.57  E-value=1.3  Score=28.91  Aligned_cols=34  Identities=18%  Similarity=0.213  Sum_probs=24.0

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEee-eCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPH   66 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~   66 (70)
                      |...-||.|.+-..-. +..|..++|.|.|.+ +|+
T Consensus        81 l~r~~~P~v~v~~~~~-~~~~~~~~L~C~a~gFyP~  115 (181)
T 3c5j_A           81 PITNVPPEVTVLTNSP-VELREPNVLICFIDKFTPP  115 (181)
T ss_dssp             CCCCBCCEEEEEESSC-CCTTSCEEEEEEEEEEBSS
T ss_pred             cccccCCceecccCCh-hhcCCCCeEEEEEeEEECC
Confidence            3445689998864321 245888999999999 454

>3s97_C Contactin-1; carbonic anhdyrase like immunoglobulin, cell adhesion comple adhesion; HET: NAG; 2.30A {Homo sapiens}

Probab=84.44  E-value=0.21  Score=30.01  Aligned_cols=27  Identities=30%  Similarity=0.254  Sum_probs=21.9

Q ss_pred             ecceEEeccCCcEEEEEE-EeeeCC-CCC
Q psy15736         43 ERSWVHSGEGYEAQLVCI-VHAEPH-ADP   69 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~Ci-V~A~P~-a~V   69 (70)
                      +.+-+...+|..+.|.|. +.+.|. +.|
T Consensus        14 ~~~~~~v~~G~~v~L~C~~~~~~p~~~~v   42 (201)
T 3s97_C           14 ERPEVRVKEGKGMVLLCDPPYHFPDDLSY   42 (201)
T ss_dssp             CCCCEEEETTCCEEECCCCCSEESSCCEE
T ss_pred             CCceEEEECCCCEEEeccccccCCCceEE
Confidence            345667789999999999 999998 654

>3s6c_A Beta-2-microglobulin, T-cell surface glycoprotein membrane-associated; MHC, immunoglobulin domain, immune system, antigen presentat glycosylation; HET: NAG FUC; 2.90A {Homo sapiens}

Probab=84.41  E-value=1  Score=33.14  Aligned_cols=34  Identities=26%  Similarity=0.293  Sum_probs=25.1

Q ss_pred             eecCCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+-||.|.+- +.-  +..|..++|.|.|.++-++.|
T Consensus         1 v~~~P~V~v~~~~~--~~~~~~~tL~C~v~~FyP~~i   35 (392)
T 3s6c_A            1 IQRTPKIQVYSRHP--AENGKSNFLNCYVSGFHPSDI   35 (392)
T ss_dssp             CCBCCCCEEEESSC--CCSSSCEEEEEEEEEEBSSCC
T ss_pred             CCCCCEEEEEcCCc--cccCCcEEEEEEEeeEECCCc
Confidence            4568999983 332  246888999999999877754

>2bc4_B HLA class II histocompatibility antigen, DM beta chain; MHC class II, immune system; HET: NDG BMA; 2.27A {Homo sapiens} PDB: 1hdm_B 1k8i_B*

Probab=84.38  E-value=1.4  Score=29.05  Aligned_cols=36  Identities=19%  Similarity=0.238  Sum_probs=25.1

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      |...-+|.|.+-..-. ...|..++|.|.|.++-++.
T Consensus        91 l~~~~~P~V~v~~~~~-~~~~~~~~L~C~v~gFyP~~  126 (211)
T 2bc4_B           91 TNRTRPPSVQVAKTTP-FNTREPVMLACYVWGFYPAE  126 (211)
T ss_dssp             HTCCBCCEEEEEECCC-CSCSSSEEEEEEEEEEBSSC
T ss_pred             ccccCCCeeEEEeCCc-ccCCCceEEEEEEeeeECCC
Confidence            3445789999864322 23578899999999974443

>2fbj_H IGA-kappa J539 FAB (heavy chain); immunoglobulin; HET: NAG FUC; 1.95A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mcp_H 2mcp_H*

Probab=84.21  E-value=1.3  Score=28.01  Aligned_cols=20  Identities=15%  Similarity=0.017  Sum_probs=17.3

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~   28 (220)
T 2fbj_H            9 GGLVQPGGSLKLSCAASGFD   28 (220)
T ss_dssp             CEEECTTCCEEEEEEEESSC
T ss_pred             CeEecCCCcEEEEEEecCcc
Confidence            46778999999999998866

>3r0n_A Poliovirus receptor-related protein 2; IG-domain, cell-adhesion molecule, virus entry receptor, STR genomics, PSI-biology; 1.30A {Homo sapiens} PDB: 4dfh_A 4dfi_A

Probab=84.19  E-value=0.71  Score=26.93  Aligned_cols=22  Identities=18%  Similarity=0.145  Sum_probs=18.1

Q ss_pred             eEEeccCCcEEEEEEEeeeCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .|.+.+|..++|.|.+...+.+
T Consensus        11 ~v~~~~G~~v~L~C~~~~~~~~   32 (128)
T 3r0n_A           11 EVRGQLGGTVELPCHLLPPVPG   32 (128)
T ss_dssp             EEECCTTSCEEECCEEESCCTT
T ss_pred             eEEEEcCCCEEEEEEeecCCCC
Confidence            3567889999999999887654

>3to4_D NKT vbeta2 (mouse variable domain, human constant; mouse CD1D, mouse NKT, immune system; HET: AGH NAG; 3.10A {Homo sapiens}

Probab=84.19  E-value=0.85  Score=29.47  Aligned_cols=27  Identities=19%  Similarity=0.294  Sum_probs=20.7

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ....+.+.+|..++|.|.+.+.|.+.|
T Consensus         7 ~p~~v~v~~G~~v~L~C~~~~~~~~~v   33 (253)
T 3to4_D            7 NPRWRLVPRGQAVNLRCILKNSQYPWM   33 (253)
T ss_dssp             ECSEEEEESSCCEEEEEECSCTTCCCE
T ss_pred             CCCeEEEeCCCcEEEEEEeCCCCcceE
Confidence            344677789999999999887776543

>1op3_H FAB 2G12, heavy chain; domain-swapped FAB 2G12, anti-carbohydrate antibody, immune system; HET: MAN; 1.75A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 1om3_H* 1op5_H* 3oay_M* 1zlu_H* 1zlv_H* 1zlw_H* 2oqj_B 1zls_H* 3ob0_H* 3oau_H* 3oaz_H* 3ghe_H 3eyf_B 3eyo_B 3ghb_H 3c2a_H 1q1j_H 2fl5_H*

Probab=84.00  E-value=0.96  Score=28.69  Aligned_cols=20  Identities=20%  Similarity=-0.056  Sum_probs=17.1

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~   28 (225)
T 1op3_H            9 GGLVKAGGSLILSCGVSNFR   28 (225)
T ss_dssp             CEEEETTCCEEEEEEEESSC
T ss_pred             CeEecCCCCEEEEEEecCcc
Confidence            35678899999999999876

>3khq_A B-cell antigen receptor complex-associated protei chain; CD79B, CD79A, IG-beta, BCR, IG domain, V-SET, immunoglobulin protein binding; HET: FLC GSH; 1.70A {Mus musculus} PDB: 3kho_A*

Probab=83.88  E-value=1.4  Score=26.92  Aligned_cols=26  Identities=8%  Similarity=0.143  Sum_probs=20.4

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeee
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .|......+.+.+|+.++|.|.+.+.
T Consensus        19 ~v~q~p~~~~v~~G~~v~L~C~~~~~   44 (133)
T 3khq_A           19 QIWQHPRFAAKKRSSMVKFHCYTNHS   44 (133)
T ss_dssp             SEEEECSEEEECTTCCEEEEEEESSS
T ss_pred             ceEEcCceEEEeCCCeEEEEEEeCCC
Confidence            34555556778899999999999876

>1tvd_A T cell receptor, ES204 V delta; immunoreceptor, TCR, delta chain, variable domain; 1.90A {Homo sapiens} SCOP: b.1.1.1

Probab=83.44  E-value=0.85  Score=26.47  Aligned_cols=23  Identities=17%  Similarity=0.193  Sum_probs=17.8

Q ss_pred             EecceEEeccCCcEEEEEEEeee
Q psy15736         42 VERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        42 v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .....+.+.+|..++|.|.+...
T Consensus         5 q~p~~~~~~~G~~vtL~C~~~~~   27 (116)
T 1tvd_A            5 QSSPDQTVASGSEVVLLCTYDTV   27 (116)
T ss_dssp             CCSCCEEEETTCCEEECCEEECC
T ss_pred             cCCCcEEEecCCeEEEEeEeEcC
Confidence            33455677899999999998754

>3qib_D 2B4 beta chain; IG domain, immune system; HET: NAG FUC BMA; 2.70A {Mus musculus}

Probab=83.44  E-value=0.81  Score=29.67  Aligned_cols=26  Identities=19%  Similarity=0.428  Sum_probs=19.7

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEee
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      +.|..+.+.+.+.+|..++|.|.+.+
T Consensus        28 ~~v~~~p~~v~v~~G~~v~L~C~~~~   53 (270)
T 3qib_D           28 MKVIQTPRYLVKGQGQKAKMRCIPEK   53 (270)
T ss_dssp             CCCEEECSEEEEETTSCEEEEEECCT
T ss_pred             eeEEeCCCeEEEcCCCCEEEEEEecC
Confidence            34445555677889999999999865

>3uto_A Twitchin; kinase, muscle sarcomere, transferase; HET: FLC P33; 2.40A {Caenorhabditis elegans} PDB: 1koa_A

Probab=83.40  E-value=1.5  Score=33.41  Aligned_cols=37  Identities=24%  Similarity=0.275  Sum_probs=30.6

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .-.-.|.+..+..-+....|+.+.|.|.|.+.|.|+|
T Consensus       478 ~~~~~P~~~~~~~~~~v~~G~~~~~~~~v~g~P~P~v  514 (573)
T 3uto_A          478 RSEAQPRFIVKPYGTEVGEGQSANFYCRVIASSPPVV  514 (573)
T ss_dssp             GGGGSCEEEECCCCEEECTTSCEEEEEEEECSSCCEE
T ss_pred             ccccCCccccCCCCcEEeCCCcEEEEEEEEccCCCeE
Confidence            3445787777766777889999999999999999976

>3t0v_A Immunoglobulin variable lambda domain; immunoglobulin fold, fluorogen activation, dimethylindole RE binding protein; HET: 1PE PE3; 1.45A {Homo sapiens} PDB: 3t0w_A* 3t0x_A* 3lrg_A 3lrh_A 2rhe_A

Probab=83.35  E-value=0.8  Score=27.86  Aligned_cols=27  Identities=15%  Similarity=0.256  Sum_probs=21.5

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |.|+-+. .+.+.+|..++|.|.+...+
T Consensus         2 p~v~Qp~-~v~v~~G~~vtL~C~~s~~~   28 (123)
T 3t0v_A            2 PVLTQSP-SVSGTPGQKVTIFCSGSSSN   28 (123)
T ss_dssp             CSBEECC-CEEECTTCCEEEEEECCTTT
T ss_pred             CccCccC-eEEEcCCCCEEEEEecCCCc
Confidence            6666664 67778999999999998754

>1k5n_A Major histocompatibility complex molecule HLA-B*2; MHC(major histocompatibility complex), HLA(human leukocyte A immune system; 1.09A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1jgd_A 1of2_A 1uxw_A 1w0w_A 3b3i_A* 3bp7_A 3czf_A* 3hcv_A* 3d18_A* 2bss_A 2bsr_A 2a83_A 1jge_A 1hsa_A 1uxs_A 1w0v_A 1ogt_A 2bst_A 3b6s_A* 3bp4_A ...

Probab=83.28  E-value=1.7  Score=30.07  Aligned_cols=31  Identities=23%  Similarity=0.208  Sum_probs=23.5

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -||.|.+-..-.   .|..++|.|.|.++.++.|
T Consensus       183 ~~P~v~v~~~~~---~~~~~~L~C~~~gFyP~~i  213 (276)
T 1k5n_A          183 DPPKTHVTHHPI---SDHEATLRCWALGFYPAEI  213 (276)
T ss_dssp             BCCEEEEEEEEE---ETTEEEEEEEEEEEBSSCC
T ss_pred             cCceeEEEcCCC---CCCceeEEEEEeCeECCcE
Confidence            578888865432   4669999999999877654

>3mj6_A Junctional adhesion molecule-like; immunoglobulin tandem domain, cell adhesion, cell junction, glycoprotein, immunoglobulin domain, membrane; HET: NAG FUC; 2.19A {Mus musculus} PDB: 3mj7_A* 3mj9_A*

Probab=83.25  E-value=0.43  Score=30.37  Aligned_cols=42  Identities=7%  Similarity=-0.185  Sum_probs=18.5

Q ss_pred             hcCcCCCccceeeeEEEEe-ecCCeEEEecceEEeccCCcEEE
Q psy15736         16 EEEPEKDKEEVRRRRRRNQ-KNLPEIEVERSWVHSGEGYEAQL   57 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V-~ypPeI~v~~~~Vha~~G~~a~L   57 (70)
                      -|.+.+....+++.+.|.| ..+|.+.+..+......|+.+..
T Consensus       217 ~C~a~n~~g~~~~~~~l~V~~~~p~~~~~p~~~~~~~~q~~~~  259 (268)
T 3mj6_A          217 TCSIYVGKLESRKTIVLHVVQDEFQRTISPTPPTDKGQQGILN  259 (268)
T ss_dssp             EEEEEETTEEEEEEEEEEEECC---------------------
T ss_pred             EEEEEcCCceEEEEEEEEEEcCCCeeeeCCCCCCCCcceeccc
Confidence            4888888888999999999 77888888888888888887653

>1ow0_A IG alpha-1 chain C region; IGA1, fcari, CD89, antibody, immunoglobulin-LIK immune system; HET: NAG FUL BMA GAL SIA FUC MAN NDG; 3.10A {Homo sapiens} SCOP: b.1.1.2 b.1.1.2 PDB: 2qej_A*

Probab=83.21  E-value=0.19  Score=31.99  Aligned_cols=30  Identities=20%  Similarity=0.279  Sum_probs=22.1

Q ss_pred             CCeEEEe-cceEEeccCCcEEEEEEEeeeCC
Q psy15736         37 LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        37 pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +|.|.+. .+.+.+.+|..++|.|.+.+.|.
T Consensus         3 ~p~v~~~~P~~~~v~~G~~v~L~C~~~g~~p   33 (214)
T 1ow0_A            3 HPRLSLHRPALEDLLLGSEANLTCTLTGLRD   33 (214)
T ss_dssp             CCCCEEECCCHHHHHHCSSCCCEEEETTCCS
T ss_pred             CCEEEEECcChHHhccCCCcEEEEEEeeeEC
Confidence            5666555 33344578999999999999864

>1n4x_H Immunoglobulin heavy chain variable region; immune system; 1.70A {Mus musculus} SCOP: b.1.1.1 PDB: 3iy4_B

Probab=83.17  E-value=1.8  Score=25.21  Aligned_cols=19  Identities=11%  Similarity=0.057  Sum_probs=15.8

Q ss_pred             eEEeccCCcEEEEEEEeee
Q psy15736         46 WVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+.+.+|..++|.|.+.+.
T Consensus         9 ~~~~~~G~~vtL~C~~~~~   27 (120)
T 1n4x_H            9 PELKKPGETVKISCKATNY   27 (120)
T ss_dssp             CEEECTTCCEEEEEEEESS
T ss_pred             CEEEcCCCeEEEEEEecCc
Confidence            3667899999999999754

>1a2y_B IGG1-kappa D1.3 FV (heavy chain); complex (immunoglobulin/hydrolase), immunoglobulin V region, signal, hydrolase, glycosidase, bacteriolytic enzyme, egg white; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1a7r_H 1dvf_B 1g7h_B 1g7i_B 1g7j_B 1g7l_B 1g7m_B 1kir_B 1vfa_B 1vfb_B 1kiq_B 1a7o_H 1a7n_H 1a7p_H 1kip_B 1a7q_H 1dl7_H* 1bvk_B 1bvl_A 1p4i_H ...

Probab=83.04  E-value=1.4  Score=25.64  Aligned_cols=25  Identities=8%  Similarity=0.106  Sum_probs=18.4

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ++.+.+ +.+.+|..++|.|.+...+
T Consensus         4 v~q~~~-~~~~~G~~vtL~C~~~~~~   28 (116)
T 1a2y_B            4 LQESGP-GLVAPSQSLSITCTVSGFS   28 (116)
T ss_dssp             EEEECC-SEECTTSCEEEEEEEESSC
T ss_pred             EEcCCC-EEEeCCCcEEEEEEEcCCC
Confidence            344433 5678999999999998654

>1p4b_L Antibody variable light chain; FV antibody, antigen peptide binder, SCFV, picomolar binder, immune system; 2.35A {Mus musculus} SCOP: b.1.1.1 PDB: 1p4i_L

Probab=83.01  E-value=0.94  Score=28.05  Aligned_cols=26  Identities=15%  Similarity=0.295  Sum_probs=19.4

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|+.+.+ +.+.+|..++|.|.+...+
T Consensus         8 ~v~q~~~-v~v~~G~~vtL~C~~~~~~   33 (135)
T 1p4b_L            8 VVTQESA-LTTSPGETVTLTCRSSTGA   33 (135)
T ss_dssp             CEECCSE-EEECTTCEEEEEEEETTSS
T ss_pred             eEEECCc-EEEcCCCCEEEEEEecCCC
Confidence            3444444 7778999999999998764

>1lp9_E T-cell receptor alpha chain; immunoregulatory complex, class I MHC:TCR CO-crystal, immune; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 2j8u_E 2jcc_E 2uwe_E 1nfd_A*

Probab=82.90  E-value=1.8  Score=27.89  Aligned_cols=35  Identities=6%  Similarity=0.142  Sum_probs=0.0

Q ss_pred             EEEEee-----cCCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         30 RRRNQK-----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        30 I~L~V~-----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      ..|.|.     -.|.|.+..+     ....++|.|.+.+ +|.+.|
T Consensus       108 t~L~V~~~~~~~~P~V~~~~~-----~~~~~tL~Cl~~gf~P~~~V  148 (194)
T 1lp9_E          108 TSLSVVPNIQNPEPAVYQLKD-----PRSQDSTLCLFTDFDSQINV  148 (194)
T ss_dssp             EEEEEECCCSSCCCEEEEEEC-----TTSSSCEEEEEESCCTTSCC
T ss_pred             ceEEecCcCCCCCCeeEecCC-----CCCCcEEEEEeecccCCccc

>2oyp_A Hepatitis A virus cellular receptor 2; TIM-3, T-cell immunoglobulin mucin, signaling protein; 1.95A {Mus musculus} PDB: 3kaa_A*

Probab=82.80  E-value=0.5  Score=26.37  Aligned_cols=22  Identities=18%  Similarity=0.110  Sum_probs=18.2

Q ss_pred             eEEeccCCcEEEEEEEeeeCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+.+|..++|.|.+.+.|.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~   24 (109)
T 2oyp_A            3 GYKVEVGKNAYLPCSYTLPTSG   24 (109)
T ss_dssp             EEEECTTSCEEECCBCCCCTTC
T ss_pred             CEEEEcCCCEEEEEEeECCCCC
Confidence            4677899999999999887644

>3kgr_A LAIR-1, hlair1, leukocyte-associated immunoglobulin-like receptor; IG-like domain, cell membrane, glycoprotein; 1.80A {Homo sapiens} PDB: 3rp1_A

Probab=82.79  E-value=1.8  Score=25.27  Aligned_cols=28  Identities=25%  Similarity=0.234  Sum_probs=22.3

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEe
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVH   62 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~   62 (70)
                      ..-+|.|+...+++- ..|..++|.|...
T Consensus         6 ~~pkPsL~a~P~~vv-~~G~~VtL~C~~~   33 (106)
T 3kgr_A            6 DLPRPSISAEPGTVI-PLGSHVTFVCRGP   33 (106)
T ss_dssp             CCCCCEEEEESCSEE-ETTCCEEEEEEEC
T ss_pred             CCCCCEEEEeCCCcc-CCCCeEEEEEEcc
Confidence            345799999987765 5699999999864

>1ncn_A T lymphocyte activation antigen CD86; IG V, beta strands, immune system; 2.70A {Homo sapiens} SCOP: b.1.1.1 PDB: 1i85_A

Probab=82.49  E-value=0.55  Score=26.78  Aligned_cols=22  Identities=14%  Similarity=0.104  Sum_probs=17.6

Q ss_pred             eEEeccCCcEEEEEEEeeeCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      -|.+.+|..++|.|.+.+.|.+
T Consensus         3 ~v~~~~G~~v~L~C~~~~~~~~   24 (110)
T 1ncn_A            3 KIQAYFNETADLPCQFANSQNQ   24 (110)
T ss_dssp             EEEEETTSCEEEECCCCCTTCC
T ss_pred             EEEEEeCCCEEEEeEeCCCCcC
Confidence            3667889999999999876643

>1fo0_A Protein (BM3.3 T cell receptor alpha-chain); class I MHC, H-2KB, TCR-PMHC complex, immune system; 2.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1nam_A*

Probab=82.49  E-value=0.74  Score=26.91  Aligned_cols=21  Identities=10%  Similarity=0.237  Sum_probs=17.5

Q ss_pred             cceEEeccCCcEEEEEEEeee
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      ...+.+.+|..++|.|.+...
T Consensus         7 p~~~~~~~G~~vtL~C~~~~~   27 (116)
T 1fo0_A            7 QTSISVMEKTTVTMDCVYETQ   27 (116)
T ss_dssp             CCEEEEETTCCEEECCEECCC
T ss_pred             CCcEEEecCCcEEEEeEecCC
Confidence            445777899999999999876

>3u6r_L Antibody 1:7 (light chain); IG-like domain, neutralizing single chain FV, immune system; 2.67A {Homo sapiens}

Probab=82.47  E-value=1.8  Score=27.22  Aligned_cols=27  Identities=15%  Similarity=0.195  Sum_probs=20.7

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |+.....+.+.+|..++|.|.+...+.
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~~~   29 (143)
T 3u6r_L            3 LTQSPATLSLSPGERATLSCRASQSVN   29 (143)
T ss_dssp             EEEECSEEEECTTCCEEEEEEESSCCT
T ss_pred             EEECCCEEEEeCCCCEEEEEEECCCCc
Confidence            444455677889999999999987653

>1c1e_H Catalytic antibody 1E9 (heavy chain); diels-alder, immunoglobulin, immune system; HET: ENH; 1.90A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1dbb_H* 1dba_H* 1dbj_H* 1dbk_H* 1dbm_H* 2dbl_H* 3ojd_B 1jgl_H* 1jhk_H 1ghf_H 1tet_H* 3e8u_H 1fj1_B 1cl7_H

Probab=82.33  E-value=1.1  Score=27.84  Aligned_cols=19  Identities=11%  Similarity=0.118  Sum_probs=16.3

Q ss_pred             EEeccCCcEEEEEEEeeeC
Q psy15736         47 VHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P   65 (70)
                      +.+.+|..++|.|.+.+.|
T Consensus        10 ~~v~~G~~v~L~C~~~~~~   28 (219)
T 1c1e_H           10 ELKKPGETVKISCKASGYM   28 (219)
T ss_dssp             EEECTTCCEEEEEEEESSC
T ss_pred             eEecCCCcEEEEEEEeCcc
Confidence            4567899999999999876

>1nqb_A Single-chain antibody fragment; multivalent antibody, diabody, domain SWA immunoglobulin; 2.00A {Mus musculus} SCOP: b.1.1.1 b.1.1.1 PDB: 1lmk_A 1qnz_H

Probab=82.32  E-value=1.3  Score=28.91  Aligned_cols=20  Identities=15%  Similarity=0.109  Sum_probs=16.9

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.|
T Consensus         9 ~~~v~~G~~v~L~C~~~g~~   28 (256)
T 1nqb_A            9 AELVKPGASVKLSCKASGYT   28 (256)
T ss_dssp             CEEECTTCCEEEEEEECSSC
T ss_pred             CeeecCCCcEEEEEEecccc
Confidence            35568899999999999876

>3r08_E T-cell surface glycoprotein CD3 epsilon chain; antibody, T-cell receptor, signalling, immune SY; 4.10A {Cricetulus migratorius}

Probab=82.29  E-value=0.37  Score=28.76  Aligned_cols=19  Identities=21%  Similarity=0.391  Sum_probs=16.1

Q ss_pred             EeccCCcEEEEEEEeeeCC
Q psy15736         48 HSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        48 ha~~G~~a~L~CiV~A~P~   66 (70)
                      .+..|..++|.|.+.+.|.
T Consensus        10 v~~~G~~v~L~C~~~g~P~   28 (82)
T 3r08_E           10 VSISGTSVELTCPLDSDEN   28 (82)
T ss_dssp             EEEETTEEEEECSSCCCSS
T ss_pred             EEEcCCeEEEEEECCCCCc
Confidence            3456999999999999994

>3q0h_A T cell immunoreceptor with IG and ITIM domains; immune receptor, adhesion, structural genomics, NEW YORK STR genomics research consortium, nysgrc; 1.70A {Homo sapiens} PDB: 3rq3_A 3udw_A* 3ucr_A

Probab=82.17  E-value=1.5  Score=25.95  Aligned_cols=26  Identities=19%  Similarity=0.302  Sum_probs=21.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEee
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      ++.|..+.+ |.+.+|..++|.|.+..
T Consensus         4 ~~~v~~~~~-v~~~~G~~v~L~C~~~~   29 (117)
T 3q0h_A            4 TGTIETTGN-ISAEKGGSIILQCHLSS   29 (117)
T ss_dssp             SCEEEESCC-EEEETTCCEEECEEEES
T ss_pred             eEEEEccCC-EEEecCCCEEEEEEecC
Confidence            566777765 56688999999999986

>2i24_N NEW antigen receptor PBLA8; immunoglobulin fold, immune system; 1.35A {Ginglymostoma cirratum} PDB: 2i25_N 2i27_N 2i26_N

Probab=81.98  E-value=1.9  Score=26.11  Aligned_cols=25  Identities=12%  Similarity=0.347  Sum_probs=18.8

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      |+.....+.+.+|..++|.|.+.+.
T Consensus         3 v~Q~p~~v~v~~G~~vtL~C~~s~~   27 (121)
T 2i24_N            3 VDQTPQRITKETGESLTINCVVRDS   27 (121)
T ss_dssp             EEEECSEEEEETTCCEEEEEEECSC
T ss_pred             cEECCcEEEEecCCcEEEEeEccCC
Confidence            3343455677899999999999765

>1mju_H Immunoglobulin MS6-12; catalytic antibody, ester hydrolysis, esterolytic, FAB, immune system; 1.22A {Mus musculus} SCOP: b.1.1.1 b.1.1.2 PDB: 1mjj_B 1mie_H 1mj7_H* 1mj8_H 1mh5_B* 4aeh_H 2y5t_A 2vwe_E 2op4_H 2ntf_H 3loh_C 1e4x_H 2vl5_A 1e4x_I 1e4w_H 3opz_H 3oz9_H 1plg_H 1hi6_B 1cfn_B ...

Probab=81.81  E-value=1.4  Score=28.19  Aligned_cols=20  Identities=15%  Similarity=0.109  Sum_probs=17.1

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.|
T Consensus         9 ~~~v~~G~~v~L~C~~~~~~   28 (227)
T 1mju_H            9 AELVKPGASVKLSCKASGYT   28 (227)
T ss_dssp             EEEECTTCCEEEEEEEESSC
T ss_pred             CeEEcCCCCEEEEEEecCCc
Confidence            45578899999999999876

>3b9v_A Heavy chain variable domain; antibody engineering, phage display, immune system; 1.80A {Homo sapiens} PDB: 1fvc_B 3p9w_B 1fgv_H 2vh5_H*

Probab=81.78  E-value=2.4  Score=24.67  Aligned_cols=24  Identities=13%  Similarity=-0.000  Sum_probs=17.8

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      ++.+. .+.+.+|..++|.|.+...
T Consensus         4 v~qp~-~~~~~~G~~vtL~C~~~~~   27 (120)
T 3b9v_A            4 LVESG-GGLVQPGGSLRLSCAASGF   27 (120)
T ss_dssp             EEEEC-CEEECTTCCEEEEEEEESS
T ss_pred             EECCC-CEEEeCCccEEEEEEeeCc
Confidence            34444 3567899999999999754

>2atp_B T-cell surface glycoprotein CD8 beta chain; CD8AB, CD8AA, MHC, immune system; HET: NAG; 2.40A {Mus musculus} SCOP: b.1.1.1 PDB: 3b9k_B*

Probab=81.77  E-value=1.2  Score=25.79  Aligned_cols=21  Identities=19%  Similarity=0.173  Sum_probs=16.9

Q ss_pred             cceEEeccCCcEEEEEEEeee
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+.+.+.+|..++|.|.+.+.
T Consensus         5 p~~~~~~~G~~vtL~C~~~~~   25 (115)
T 2atp_B            5 PSSLLVQTNHTAKMSCEVKSI   25 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSS
T ss_pred             CCCEEEcCCCcEEEEEEecCC
Confidence            345667899999999999764

>1uvq_A HLA class II histocompatibility antigen; immunology, MHC class II, diabetes, narcolepsy, autoimmune disease, structural proteomics in europe, spine, structural genomics; HET: NAG FUC BMA; 1.8A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 3pl6_A* 4d8p_A 1s9v_A 2nna_A 1jk8_A*

Probab=81.58  E-value=1.9  Score=28.72  Aligned_cols=35  Identities=23%  Similarity=0.374  Sum_probs=24.7

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      |...-||.|.+-..-. ...|..++|.|.|.++ |+.
T Consensus        84 l~~~~~P~V~v~~~~~-~~~~~~~tL~C~a~gFyP~~  119 (197)
T 1uvq_A           84 AATNEVPEVTVFSKSP-VTLGQPNTLICLVDNIFPPV  119 (197)
T ss_dssp             CCCCCCCEEEEEESSC-CCTTSCEEEEEEEEEECSSC
T ss_pred             ccccCCCCcccccCCc-cccCCccEEEEEEEeEcCCC
Confidence            4456789998865421 2357889999999995 543

>3uzq_A Anti-dengue MAB 4E11; dengue antibody neutralization, immune system; HET: MES; 1.60A {Mus musculus} PDB: 3uze_A* 3uyp_A* 3uzv_B 1dzb_A

Probab=81.46  E-value=1.3  Score=28.33  Aligned_cols=22  Identities=14%  Similarity=0.092  Sum_probs=17.5

Q ss_pred             cceEEeccCCcEEEEEEEeeeC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ..-+.+.+|..++|.|.+.+.|
T Consensus         8 p~~~~v~~G~~v~L~C~~~g~~   29 (253)
T 3uzq_A            8 SGAELVKPGASVRLSCTASGFN   29 (253)
T ss_dssp             CCCEEECTTCCEEEEEEECSSC
T ss_pred             CCCeeecCCCcEEEEEEeeCCc
Confidence            3445678899999999998854

>3s35_X Vascular endothelial growth factor receptor 2; antibody, KDR, VEGF receptor, cancer, immune system-transfer complex; HET: NAG; 2.20A {Homo sapiens} PDB: 3s36_X 3s37_X

Probab=81.39  E-value=0.45  Score=27.40  Aligned_cols=29  Identities=3%  Similarity=-0.075  Sum_probs=23.0

Q ss_pred             hcCcCCCccceeeeEEEEeecCCeEEEec
Q psy15736         16 EEEPEKDKEEVRRRRRRNQKNLPEIEVER   44 (70)
Q Consensus        16 ~~~~~~~~~pvs~~I~L~V~ypPeI~v~~   44 (70)
                      .|.+.+......+.+.|.|..+|.|.+..
T Consensus        90 ~C~a~n~~g~~~~~~~l~V~~~p~i~~~p  118 (122)
T 3s35_X           90 TCAASSGLMTKKNSTFVRVHEKPFVAFGS  118 (122)
T ss_dssp             EEEEECSSCEEEEEEEEEEEEEECC----
T ss_pred             EEEEccCCCceEEEEEEEEeccCeEEeec
Confidence            58899988889999999999999998764

>1onq_A T-cell surface glycoprotein CD1A; protein-glycolipid complex, beta sheet platform,, immune SYS; HET: NAG FUC SLF; 2.15A {Homo sapiens} SCOP: b.1.1.2 d.19.1.1 PDB: 1xz0_A*

Probab=81.34  E-value=2  Score=29.96  Aligned_cols=30  Identities=30%  Similarity=0.247  Sum_probs=21.9

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      -||.|.+-..-  +..|..++|.|.|.+ +|+.
T Consensus       185 ~~P~v~v~~~~--~~~~~~~~L~C~a~gFyP~~  215 (283)
T 1onq_A          185 VKPEAWLSHGP--SPGPGHLQLVCHVSGFYPKP  215 (283)
T ss_dssp             BCCEEEEEEEC--CCSTTEEEEEEEEEEEBSSC
T ss_pred             cCceEEEEecc--CCCCCceeEEEEEEeEECCc
Confidence            57888886432  234678999999999 5654

>1pew_A JTO2, A lambda-6 type immunoglobulin light chain, domain; beta sheet, immune system; 1.60A {Homo sapiens} SCOP: b.1.1.1 PDB: 1cd0_A 1pw3_A 2cd0_A 2w0k_A 3b5g_A 3bdx_A* 2w0l_A

Probab=81.24  E-value=1.4  Score=25.29  Aligned_cols=21  Identities=14%  Similarity=0.234  Sum_probs=17.2

Q ss_pred             ceEEeccCCcEEEEEE-EeeeC
Q psy15736         45 SWVHSGEGYEAQLVCI-VHAEP   65 (70)
Q Consensus        45 ~~Vha~~G~~a~L~Ci-V~A~P   65 (70)
                      +.+.+.+|..++|.|. +.+.|
T Consensus         8 ~~~~v~~G~~v~L~C~v~~~~~   29 (109)
T 1pew_A            8 HSVSESPGKTVTISCTRSSGNI   29 (109)
T ss_dssp             SEEEECTTSCEEEEEEESSSCG
T ss_pred             CCEEEcCCCCEEEEEEeCCCCC
Confidence            4567789999999999 77665

>3pl6_D MBP peptide / T-cell receptor beta chain chimera; TCR-MHC complex, immunoglobulin fold, immune receptor, membr immune system; HET: NAG; 2.55A {Homo sapiens}

Probab=81.22  E-value=0.59  Score=30.21  Aligned_cols=26  Identities=15%  Similarity=0.028  Sum_probs=20.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEe
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVH   62 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~   62 (70)
                      .|.|..+...+.+.+|..++|.|.+.
T Consensus        26 ~~~v~~~p~~v~v~~G~~v~L~C~~~   51 (268)
T 3pl6_D           26 GAGVSQTPSNKVTEKGKYVELRCDPI   51 (268)
T ss_dssp             -SSCBCCCSEEEEETTCCEEEEEBCB
T ss_pred             CceeEeCCCEEEecCCCCEEEEEEeC
Confidence            45566666778889999999999986

>3r8b_B G5-8, enterotoxin type B; immunoglobulin-like, OB-fold, toxin-immune system complex; 2.95A {Rattus norvegicus}

Probab=81.17  E-value=2.2  Score=25.54  Aligned_cols=27  Identities=11%  Similarity=0.047  Sum_probs=20.4

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .|+.+...+.+.+|..++|.|.+...+
T Consensus         7 ~V~Q~p~~~~v~~G~~vtL~C~~~~~~   33 (125)
T 3r8b_B            7 AVTQSPRNKVAVTGEKVTLSCKQTNSY   33 (125)
T ss_dssp             EEEEECSEEEEETTCCEEEEEEEESCC
T ss_pred             cEEecCCeEEEcCCCcEEEEEEECCCC
Confidence            345555667778999999999987654

>2ak4_D SB27 T cell receptor alpha chain; bulged epitopes, PMHC/TCR complex, immune system; 2.50A {Homo sapiens} SCOP: b.1.1.1 b.1.1.2 PDB: 3kxf_D 3nfj_I 3ffc_D

Probab=80.83  E-value=2.7  Score=27.47  Aligned_cols=35  Identities=14%  Similarity=0.170  Sum_probs=24.0

Q ss_pred             EEEEee-----cCCeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         30 RRRNQK-----NLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        30 I~L~V~-----ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      ..|.|.     -+|.|.+..+.     +..++|.|.+.+ +|.+.|
T Consensus       111 t~L~V~~~~~~~~P~V~~~~~~-----~~~vtL~Cl~~gf~P~~~v  151 (211)
T 2ak4_D          111 TRLQVFPNIQNPDPAVYQLRDS-----KSSDKSVCLFTDFDSQTNV  151 (211)
T ss_dssp             EEEEEECCCSSCCCEEEEEBCC-----SSSCCEEEEEESCCTTCCC
T ss_pred             EEEEEeCcCCCCCCEEEEccCC-----CCceEEEEEeeeecCCccc
Confidence            456664     45788776542     347999999998 777654

>2xt1_B Camelid VHH 9; viral protein-immune system complex; 1.32A {Vicugna pacos} PDB: 2xv6_B 2xxc_B 2xxm_B

Probab=80.76  E-value=2.5  Score=25.17  Aligned_cols=20  Identities=15%  Similarity=0.042  Sum_probs=16.3

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.+
T Consensus        11 ~~~v~~G~~vtL~C~~s~~~   30 (121)
T 2xt1_B           11 GGLVQAGGSLRLSCAASGSF   30 (121)
T ss_dssp             CEEEETTCCEEEEEEEESSS
T ss_pred             CEEEeCCCCEEEEEEecCee
Confidence            45678899999999998644

>2yc1_A Single chain antibody fragment 9004G; immune system-toxin complex, scorpion toxin; 1.90A {Homo sapiens} PDB: 2ybr_A 1dql_H 3cfi_C

Probab=80.67  E-value=2.6  Score=24.33  Aligned_cols=19  Identities=16%  Similarity=-0.025  Sum_probs=15.7

Q ss_pred             eEEeccCCcEEEEEEEeee
Q psy15736         46 WVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~   64 (70)
                      .+.+.+|..++|.|.+...
T Consensus         9 ~~~~~~G~~vtL~C~~~~~   27 (117)
T 2yc1_A            9 GGLVQPGGSLRLSCTGSGF   27 (117)
T ss_dssp             CEEECTTCCEEEEEEEESS
T ss_pred             CEEEcCCCeEEEEEEecCc
Confidence            3567889999999999754

>1j05_H T84.66 antibody, anti-CEA MAB T84.66, heavy chain; immunoglobulin, immune system; 1.50A {Mus musculus} SCOP: b.1.1.1 PDB: 1dvf_D 1mvu_B 1ap2_B 2ap2_B

Probab=80.52  E-value=2.5  Score=24.71  Aligned_cols=20  Identities=15%  Similarity=0.102  Sum_probs=16.1

Q ss_pred             eEEeccCCcEEEEEEEeeeC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P   65 (70)
                      .+.+.+|..++|.|.+.+.+
T Consensus         9 ~~~~~~G~~vtL~C~~~~~~   28 (121)
T 1j05_H            9 AELVEPGASVKLSCTASGFN   28 (121)
T ss_dssp             CEEECTTCCEEEEEEEESSC
T ss_pred             CEEEeCCCcEEEEEEecCcc
Confidence            34668899999999998643

>3zyi_A Leucine-rich repeat-containing protein 4; cell adhesion, LRRC4 complex, synapse; HET: NAG; 2.60A {Homo sapiens} PDB: 3zyo_A* 3zyn_A* 2dl9_A

Probab=80.43  E-value=0.3  Score=34.79  Aligned_cols=31  Identities=26%  Similarity=0.258  Sum_probs=25.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|....+-+...+|..++|.|.+.  |.|.|
T Consensus       352 ~P~i~~~~~~~~v~~G~~~~l~C~~~--p~p~i  382 (452)
T 3zyi_A          352 APFIMDAPRDLNISEGRMAELKCRTP--PMSSV  382 (452)
T ss_dssp             CCCCSBCCCCEECCTTSCCEECCBCC--TTSEE
T ss_pred             CcccccccccccccCCCEEEEEEeCC--CCCcE
Confidence            57777776778889999999999988  87754

>3tpk_A Immunoglobulin heavy chain antibody variable DOMA; immunoglobulin heavy chain domains, VHH, complementarity DET regions, CDR, oligomer-specific; 1.30A {Camelidae} PDB: 3ln9_A* 1zv5_A

Probab=80.27  E-value=2.3  Score=26.26  Aligned_cols=29  Identities=14%  Similarity=0.106  Sum_probs=18.2

Q ss_pred             cCCeEEEe-cceEEeccCCcEEEEEEEeee
Q psy15736         36 NLPEIEVE-RSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        36 ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      |..+|.+. .+.+.+.+|..++|.|.+...
T Consensus         2 ~~~~~~l~q~~~~~v~~G~~vtL~C~~s~~   31 (136)
T 3tpk_A            2 YKDEVQLVESGGGSVQPGGSLRLSCTASGY   31 (136)
T ss_dssp             ---CEEEEEECCEEECTTCCEEEEEEEEES
T ss_pred             CCccEEEEeeCCEEEccCCCEEEEEEEccc
Confidence            34444333 234567899999999998753

>2pet_A Lutheran blood group glycoprotein; immunoglobulin superfamily., cell adhesion; 1.70A {Homo sapiens} PDB: 2pf6_A

Probab=80.07  E-value=0.4  Score=29.62  Aligned_cols=20  Identities=20%  Similarity=0.205  Sum_probs=16.8

Q ss_pred             EEeccCCcEEEEEEEeeeCC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +...+|..++|.|.+.+.|.
T Consensus        10 ~~v~~G~~v~L~C~~~~~~~   29 (231)
T 2pet_A           10 VEVMRGKSVILDCTPTGTHD   29 (231)
T ss_dssp             EEEETTCCEEECCCCBSCCS
T ss_pred             EEEEcCCCEEEecccCCCCC
Confidence            44477999999999999885

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	70
d1qz1a3	100	Neural cell adhesion molecule (NCAM) {Rat (Rattus	97.96
d1cs6a3	91	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	97.95
d2crya1	115	Kin of IRRE-like protein 3, KIRREL3 {Human (Homo s	97.74
d3b5ha1	101	Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 960	97.68
d2ifga1	92	High affinity nerve growth factor receptor TrkA, d	97.61
d1wiua_	93	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.36
d1iray3	107	Type-1 interleukin-1 receptor {Human (Homo sapiens	97.33
d1g1ca_	98	Titin {Human (Homo sapiens), different modules [Ta	97.23
d1f2qa1	82	IgE high affinity receptor alpha subunit {Human (H	97.22
d1biha4	89	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	97.17
d1koaa1	97	Twitchin {Nematode (Caenorhabditis elegans) [TaxId	97.13
d2fdbp2	109	Fibroblast growth factor receptor, FGFR {Human (Ho	97.13
d1gxea_	130	Cardiac myosin binding protein C, different domain	97.09
d1f97a1	102	Junction adhesion molecule, JAM, N-terminal domain	97.08
d1iama1	103	Intercellular cell adhesion molecule-1 (ICAM-1) {H	97.04
d1fnla1	84	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.98
d1wwbx_	103	Ligand binding domain of trkB receptor {Human (Hom	96.94
d1fhga_	102	Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103	96.93
d1nbqa1	105	Junction adhesion molecule, JAM, N-terminal domain	96.93
d1cs6a1	97	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.87
d2oz4a3	84	Intercellular adhesion molecule-1, ICAM-1 {Human (	96.76
d1vcaa2	90	Vascular cell adhesion molecule-1 (VCAM-1) {Human	96.69
d1rhfa2	85	Tyrosine-protein kinase receptor tyro3, second dom	96.68
d1cs6a4	89	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	96.6
d1wwca_	105	NT3 binding domain of trkC receptor {Human (Homo s	96.5
d2fcba1	85	Fc gamma receptor ectodomain (CD32) {Human (Homo s	96.45
d1biha1	94	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.4
d1gl4b_	89	Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId:	96.29
d1biha3	97	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	96.27
d2cqva1	101	Telokin {Human (Homo sapiens) [TaxId: 9606]}	96.24
d1gsma1	90	Mucosal addressin cell adhesion molecule-1 (MADCAM	96.08
d2c9aa1	96	Receptor-type tyrosine-protein phosphatase mu {Hum	96.04
d2nxyb2	84	CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9	96.02
d1n26a1	93	Interleukin-6 receptor alpha chain, N-terminal dom	95.99
d3dara1	97	Fibroblast growth factor receptor, FGFR {Human (Ho	95.84
d1rhfa1	91	Tyrosine-protein kinase receptor tyro3, N-terminal	95.71
d1nbqa2	104	Junction adhesion molecule, JAM, C-terminal domain	95.69
d1tnna_	91	Titin {Human (Homo sapiens), different modules [Ta	95.65
d1vcaa1	109	Vascular cell adhesion molecule-1 (VCAM-1) {Human	95.63
d1epfa1	97	Neural cell adhesion molecule (NCAM) {Rat (Rattus	95.6
d1epfa2	92	Neural cell adhesion molecule (NCAM) {Rat (Rattus	95.58
d1f97a2	110	Junction adhesion molecule, JAM, C-terminal domain	95.32
d1dr9a2	95	CD80, second domain {Human (Homo sapiens) [TaxId:	94.85
d2avga1	110	Cardiac myosin binding protein C, different domain	94.69
d1nezg_	122	CD8 {Mouse (Mus musculus) [TaxId: 10090]}	94.54
d1x44a1	90	Myosin-binding protein C, slow-type {Human (Homo s	93.68
d2dava1	113	Myosin-binding protein C, slow-type {Human (Homo s	93.62
d2aw2a1	104	B- and T-lymphocyte attenuator CD272 {Human (Homo	93.54
d1pkoa_	126	Myelin oligodendrocyte glycoprotein (MOG) {Rat (Ra	93.4
d1eaja_	124	Coxsackie virus and adenovirus receptor (Car), dom	93.3
d1zxqa1	106	Intercellular cell adhesion molecule-2 (ICAM-2) {H	93.22
d1biha2	111	Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}	93.14
d1pd6a_	94	Cardiac myosin binding protein C, different domain	92.84
d1de4a1	94	Hemochromatosis protein Hfe, alpha-3 domain {Human	92.39
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	92.38
d1cs6a2	105	Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}	91.96
d1t7va1	94	Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Hu	91.64
d2mhaa1	89	Class I MHC, alpha-3 domain {Mouse (Mus musculus)	91.25
d1k5na1	95	Class I MHC, alpha-3 domain {Human (Homo sapiens)	90.71
d1k5nb_	100	beta2-microglobulin {Human (Homo sapiens) [TaxId:	90.0
d1tiua_	89	Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxI	89.97
d1lk2b_	99	beta2-microglobulin {Mouse (Mus musculus) [TaxId:	88.26
d3frua1	91	Fc (IgG) receptor, alpha-3 domain {Rat (Rattus nor	88.26
d1l6za2	96	Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-t	87.29
d1hxma1	120	T-cell antigen receptor {Human (Homo sapiens), gam	86.46
d1fp5a2	105	Immunoglobulin heavy chain epsilon constant domain	85.72
d1lp9e1	115	T-cell antigen receptor {Mouse (Mus musculus), alp	85.51
d1muja1	100	Class II MHC alpha chain, C-terminal domain {Mouse	84.39
d1hyrc1	94	Class I MHC homolog, alpha-3 domain {Human (Homo s	83.41
d1ccza1	93	CD2-binding domain of CD58, N-terminal domain {Hum	83.06
d2fcba2	88	Fc gamma receptor ectodomain (CD32) {Human (Homo s	82.91
d1rzfl2	102	Immunoglobulin light chain lambda constant domain,	82.63
d1hdmb1	98	Class II MHC beta chain, C-terminal domain {Human	82.44
d1olla1	95	Ligand binding domain of NK receptor NKp46 {Human	81.51
d1fnla2	89	Fc gamma receptor ectodomain (CD32) {Human (Homo s	81.17
d2atpb1	115	CD8 {Mouse (Mus musculus), beta-chain [TaxId: 1009	81.02
d1ucta1	99	Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sa	80.55
d2bnqd1	113	T-cell antigen receptor {Human (Homo sapiens), alp	80.53
d1tvda_	116	T-cell antigen receptor {Human (Homo sapiens), del	80.12

>d1qz1a3 b.1.1.4 (A:190-289) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=97.96  E-value=2.7e-06  Score=49.05  Aligned_cols=35  Identities=23%  Similarity=0.345  Sum_probs=30.0

Q ss_pred             ecCCeEEEecceE--EeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWV--HSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~V--ha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++||.|....+.+  .+.+|..++|.|.+.|.|.|.|
T Consensus         1 nvPP~i~~~~~~~~~t~~~G~~v~l~C~~~g~P~p~i   37 (100)
T d1qz1a3           1 NVPPTVQARQSIVNATANLGQSVTLVCDADGFPEPTM   37 (100)
T ss_dssp             EEEEEEEESCSEEEEETTSCCCEEEEEEEEEESCCEE
T ss_pred             CcCCEEEeCCCceeEEEcCCCCEEEEEEEEEecCCEE
Confidence            5799999887766  4578999999999999999875

>d1cs6a3 b.1.1.4 (A:209-299) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=97.95  E-value=2.4e-06  Score=48.95  Aligned_cols=35  Identities=17%  Similarity=0.247  Sum_probs=31.1

Q ss_pred             ecCCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|||.|.+. .+.+.+.+|..++|.|.+.|.|.|.|
T Consensus         2 ~~~P~i~~~~p~~~~~~~G~~v~l~C~~~g~P~p~i   37 (91)
T d1cs6a3           2 QYAPSIKAKFPADTYALTGQMVTLECFAFGNPVPQI   37 (91)
T ss_dssp             CEEEEEEECCCSEEEEETTCCEEEECEEEEESCCEE
T ss_pred             ccCCeEEeeCCCcEEEecCCcEEEEEEEEEccCCEE
Confidence            589999987 47888899999999999999999875

>d2crya1 b.1.1.1 (A:8-122) Kin of IRRE-like protein 3, KIRREL3 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Kin of IRRE-like protein 3, KIRREL3
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.74  E-value=2.9e-06  Score=49.40  Aligned_cols=35  Identities=20%  Similarity=0.351  Sum_probs=30.0

Q ss_pred             EEeecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         32 RNQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        32 L~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |.|++||.|..++ .+.+.+|..+.|.|.+.|.|.+
T Consensus         2 L~V~~Pp~i~~~~-~~~~~~G~~~~l~C~v~~~~p~   36 (115)
T d2crya1           2 LTVNGPPIISSTQ-TQHALHGEKGQIKCFIRSTPPP   36 (115)
T ss_dssp             CCCCSSCCEEEEC-CCCCCTTSCCCCCEEECCSSCC
T ss_pred             eEEecCCEEecCC-CEEEecCCEEEEEEEeecCCCe
Confidence            7899999998765 4678899999999999997654

>d3b5ha1 b.1.1.4 (A:103-203) Cervical EMMPRIN {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cervical EMMPRIN
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.68  E-value=1.6e-05  Score=45.28  Aligned_cols=32  Identities=31%  Similarity=0.452  Sum_probs=29.9

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      ||.|....+.+++.+|..++|.|.+.|.|.+.
T Consensus         2 PP~i~~~~~~~~v~~G~~v~l~C~v~g~P~p~   33 (101)
T d3b5ha1           2 PPRVKAVKSSEHINEGETAMLVCKSESVPPVT   33 (101)
T ss_dssp             SCCCEESCSEEEECTTSCEEEEEECCCSSCCC
T ss_pred             CceEEEcCCcEEECcCCeEEEEEEEEecCCee
Confidence            89999999999999999999999999999874

>d2ifga1 b.1.1.4 (A:192-283) High affinity nerve growth factor receptor TrkA, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: High affinity nerve growth factor receptor TrkA, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.61  E-value=2.8e-05  Score=44.19  Aligned_cols=33  Identities=18%  Similarity=0.298  Sum_probs=30.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.|.+..+-+...+|+.++|.|.+.|.|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~v~l~C~~~g~P~p~v   34 (92)
T d2ifga1           2 VPTLKVQVPNASVDVGDDVLLRCQVEGRGLEQA   34 (92)
T ss_dssp             CCEEEEECCSSCCBTTCCEEEEEEEECSSCCCC
T ss_pred             CCEEEEeCCCEEEeCCCEEEEeeeccCCCCcEE
Confidence            588999888888999999999999999999986

>d1wiua_ b.1.1.4 (A:) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.36  E-value=6.3e-05  Score=42.61  Aligned_cols=33  Identities=15%  Similarity=0.220  Sum_probs=29.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+..-+.+..|..++|.|.+.|.|.|.|
T Consensus         2 ~P~i~~~~~~~~v~~G~~~~l~c~~~g~P~p~v   34 (93)
T d1wiua_           2 KPKILTASRKIKIKAGFTHNLEVDFIGAPDPTA   34 (93)
T ss_dssp             CCEECCCCCEEEECSSBCCEEEEEEECCSSCEE
T ss_pred             CCeEEeCCCcEEEeCCCeEEEEEEEEEecCCeE
Confidence            688888877888999999999999999999875

>d1iray3 b.1.1.4 (Y:205-311) Type-1 interleukin-1 receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Type-1 interleukin-1 receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.33  E-value=7.8e-05  Score=42.81  Aligned_cols=32  Identities=22%  Similarity=0.259  Sum_probs=26.4

Q ss_pred             CeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.|..+ +..+.+.+|.+++|.|.|.|.|.+.|
T Consensus         2 P~i~~p~~~~i~v~~G~~v~l~C~v~g~P~p~i   34 (107)
T d1iray3           2 PVIVSPANETMEVDLGSQIQLICNVTGQLSDIA   34 (107)
T ss_dssp             CEEEECCSEEEECCTTCCEEEEEEEEECTTCEE
T ss_pred             CCEEEECCCEEEEeCCCEEEEEEEeccCCCCeE
Confidence            556554 46678889999999999999999875

>d1g1ca_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=97.23  E-value=0.00012  Score=41.73  Aligned_cols=33  Identities=21%  Similarity=0.262  Sum_probs=28.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+-+-+....|+.++|.|.+.|.|.|.|
T Consensus         4 aP~f~~~~~~~~v~~g~~v~l~c~v~g~P~p~v   36 (98)
T d1g1ca_           4 APKIFERIQSQTVGQGSDAHFRVRVVGKPDPEC   36 (98)
T ss_dssp             EEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCeEecCCCcEEEcCCCcEEEEEEEEEecCCeE
Confidence            577777777788899999999999999999875

>d1f2qa1 b.1.1.4 (A:4-85) IgE high affinity receptor alpha subunit {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: IgE high affinity receptor alpha subunit
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.22  E-value=4.1e-05  Score=43.22  Aligned_cols=33  Identities=15%  Similarity=0.283  Sum_probs=26.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|++..++....+|+.++|.|.+.+.|.+..
T Consensus         1 KP~It~~P~~~~v~~G~~v~L~C~~~~~~~~~~   33 (82)
T d1f2qa1           1 KPKVSLNPPWNRIFKGENVTLTCNGNNFFEVSS   33 (82)
T ss_dssp             CCCCEEESSCSEEETTCCEEEECCTTCC----C
T ss_pred             CCEEEEcCCCeEEeCCCeEEEEEEEeeeeeecc
Confidence            589999988888889999999999999998754

>d1biha4 b.1.1.4 (A:307-395) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=97.17  E-value=0.00019  Score=40.68  Aligned_cols=33  Identities=18%  Similarity=0.357  Sum_probs=27.2

Q ss_pred             CCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.+... .+.+....|..+.|.|.+.|.|.|.|
T Consensus         2 aP~f~~~p~~~~~v~~G~~~~l~C~~~g~P~p~v   35 (89)
T d1biha4           2 APKYEQKPEKVIVVKQGQDVTIPCKVTGLPAPNV   35 (89)
T ss_dssp             EEEEEECCCSEEEECTTSCEEEECEEEEESCCCC
T ss_pred             CCeEEECCCCCEEEeCCCeEEEEEEEEEeCCCEE
Confidence            4666654 45677789999999999999999986

>d1koaa1 b.1.1.4 (A:6265-6361) Twitchin {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=97.13  E-value=0.00019  Score=40.75  Aligned_cols=33  Identities=27%  Similarity=0.294  Sum_probs=28.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|.+..+-+-+.+.+|..+.|.|.+.|.|.+.|
T Consensus         1 ~P~f~~~p~~~~v~~G~~~~l~C~~~g~P~p~v   33 (97)
T d1koaa1           1 QPRFIVKPYGTEVGEGQSANFYCRVIASSPPVV   33 (97)
T ss_dssp             SCEEEECCCCCEEETTSCEEEEEEEECSSCCEE
T ss_pred             CCEEEEeCCCEEEeCCCcEEEEEEEEEcCCCEE
Confidence            377777766778899999999999999999875

>d2fdbp2 b.1.1.4 (P:2252-2360) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR1 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR1 [TaxId: 9606]

Probab=97.13  E-value=0.00014  Score=41.32  Aligned_cols=34  Identities=15%  Similarity=0.266  Sum_probs=27.7

Q ss_pred             cCCeEEEe-cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+|.|... .+-+.+.+|..++|.|.|.|.|.|.|
T Consensus         3 ~~P~i~~~~P~~~tv~~G~~v~l~C~v~g~P~p~v   37 (109)
T d2fdbp2           3 HRPILQAGLPANASTVVGGDVEFVCKVYSDAQPHI   37 (109)
T ss_dssp             SCCEECTTCSCCEEECTTCCEEEEEEEECSSCCEE
T ss_pred             CCCEEcCCCCCCEEEecCCcEEEEEEEEEcCCCeE
Confidence            46888754 24567899999999999999999875

>d1gxea_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.09  E-value=5.3e-05  Score=43.56  Aligned_cols=35  Identities=14%  Similarity=0.210  Sum_probs=28.0

Q ss_pred             ecCCeEEE-----ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEV-----ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v-----~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++||.|..     ..+.|....|..++|.|.+.|.|.+.|
T Consensus         2 q~PP~i~~~~~~~~~~~v~v~~G~~v~L~C~v~G~P~p~i   41 (130)
T d1gxea_           2 QEPPKIHLDCPGRIPDTIVVVAGNKLRLDVPISGDPAPTV   41 (130)
T ss_dssp             CBCCCSCCSSSCCCCCEEEESSSSCCCCEEECCSBSCCEE
T ss_pred             CCCCEEECCCCCCCCCCEEEEcCCeEEEEEEEEEecCCeE
Confidence            57888843     134666789999999999999999875

>d1f97a1 b.1.1.1 (A:27-128) Junction adhesion molecule, JAM, N-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=97.08  E-value=0.00015  Score=41.16  Aligned_cols=33  Identities=15%  Similarity=0.085  Sum_probs=29.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|.|..+.+-+...+|+.++|.|.+.+.|.+.|
T Consensus         1 k~sV~t~~~~v~v~~G~~v~l~C~~~g~p~p~v   33 (102)
T d1f97a1           1 KGSVYTAQSDVQVPENESIKLTCTYSGFSSPRV   33 (102)
T ss_dssp             CCEEECSCSEEEEETTCCEEEECEEESCSSEEE
T ss_pred             CCCEEccCCcEEEeCCCEEEEEEEcCCCCCCeE
Confidence            478888999999999999999999999998765

>d1iama1 b.1.1.3 (A:83-185) Intercellular cell adhesion molecule-1 (ICAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-1 (ICAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.04  E-value=0.00022  Score=41.96  Aligned_cols=34  Identities=21%  Similarity=0.222  Sum_probs=28.8

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEee-eCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHA-EPHAD   68 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~   68 (70)
                      .|||.|.+..+-....+|++++|.|.|.+ .|.|.
T Consensus         2 ~~P~~v~i~p~~~~v~~G~~~~L~C~v~g~~P~p~   36 (103)
T d1iama1           2 WTPERVELAPLPSWQPVGKQLTLRCQVEGGAPRAQ   36 (103)
T ss_dssp             BCCSEEEECCCCSEECTTSEEEEEEEEECCBCGGG
T ss_pred             CCCCceEEeCCCceEeCCCEEEEEEEecCCCCCCc
Confidence            47999999977777889999999999996 67664

>d1fnla1 b.1.1.4 (A:3-86) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=96.98  E-value=0.00037  Score=39.23  Aligned_cols=35  Identities=17%  Similarity=0.200  Sum_probs=29.6

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +=+|.|++.-+.....+|+.++|.|.+.+.|.+.+
T Consensus         3 lPkpvi~~~P~~~~v~~G~~vtL~C~~~~~~~~~~   37 (84)
T d1fnla1           3 LPKAVVFLEPQWYSVLEKDSVTLKCQGAYSPEDNS   37 (84)
T ss_dssp             CCCCEEEEESCCSEEETTCCEEEEEECCCBTTBCC
T ss_pred             CCCCEEEECCCCcEEeCCCeEEEEEEeccCCCCeE
Confidence            34788998877777789999999999999998754

>d1wwbx_ b.1.1.4 (X:) Ligand binding domain of trkB receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of trkB receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.94  E-value=0.00017  Score=42.00  Aligned_cols=33  Identities=15%  Similarity=0.091  Sum_probs=26.6

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+|||.|+.-+.   ...++...|.|.|.|+|.|.|
T Consensus         1 v~~pP~it~~~~---~~~~~~~~i~~~v~G~P~P~i   33 (103)
T d1wwbx_           1 VHFAPTITFLES---PTSDHHWCIPFTVKGNPKPAL   33 (103)
T ss_dssp             CCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEE
T ss_pred             CccCCeeEEcCC---CccceeEEEEEEEEEeCCCEE
Confidence            789999975432   246888999999999999976

>d1fhga_ b.1.1.4 (A:) Telokin {Turkey (Meleagris gallopavo) [TaxId: 9103]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Turkey (Meleagris gallopavo) [TaxId: 9103]

Probab=96.93  E-value=0.00034  Score=40.02  Aligned_cols=34  Identities=21%  Similarity=0.190  Sum_probs=28.6

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -+|.|...-+-+.+..|+.+.|.|.+.|.|.+.|
T Consensus         7 ~~P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v   40 (102)
T d1fhga_           7 VKPYFTKTILDMEVVEGSAARFDCKVEGYPDPEV   40 (102)
T ss_dssp             EEEEEEECCCCEEEETTSCEEEEEEEEEESCCEE
T ss_pred             CCCeEEcCCCcEEEecCCcEEEEEEEEeccCCeE
Confidence            3688776666677889999999999999999875

>d1nbqa1 b.1.1.1 (A:25-129) Junction adhesion molecule, JAM, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Junction adhesion molecule, JAM, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.93  E-value=0.00012  Score=41.45  Aligned_cols=33  Identities=12%  Similarity=0.072  Sum_probs=27.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++.|....+.|.+.+|+.++|.|.+.|.|.|.|
T Consensus         4 ~v~V~~~~~~v~v~~g~~v~L~C~~~g~p~p~v   36 (105)
T d1nbqa1           4 SVTVHSSEPEVRIPENNPVKLSCAYSGFSSPRV   36 (105)
T ss_dssp             CCEEECSCSBCCEETTCCCEEECEEESCSSEEE
T ss_pred             ceEEECCCCeEEEeCCCeEEEEEEeCCCCCCee
Confidence            356667777888889999999999999998865

>d1cs6a1 b.1.1.4 (A:7-103) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.87  E-value=0.00021  Score=40.61  Aligned_cols=35  Identities=23%  Similarity=0.210  Sum_probs=26.5

Q ss_pred             ecCCeEEEecceEEecc---CCcEEEEEEEeeeCCCCC
Q psy15736         35 KNLPEIEVERSWVHSGE---GYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~---G~~a~L~CiV~A~P~a~V   69 (70)
                      .|+|.+..+-+-+....   |+.+.|.|.|.|.|.+.|
T Consensus         2 ~~~P~f~~~P~~~~~~~g~~~~~v~l~C~~~g~P~p~v   39 (97)
T d1cs6a1           2 SYGPVFEEQPAHTLFPEGSAEEKVTLTCRARANPPATY   39 (97)
T ss_dssp             CEEEEEEECCCCEEEETTCSCCEEEECCEEEEESCCEE
T ss_pred             CcCCEEEEeCCCEEEECccCCCeEEEEEEEEEeCCCEE
Confidence            47888877654444444   478999999999999865

>d2oz4a3 b.1.1.4 (A:367-450) Intercellular adhesion molecule-1, ICAM-1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Intercellular adhesion molecule-1, ICAM-1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.76  E-value=4.2e-05  Score=44.13  Aligned_cols=34  Identities=12%  Similarity=0.138  Sum_probs=27.0

Q ss_pred             cCCeEEEe--cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVE--RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~--~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |+|.|...  .+-+....|.+++|.|.+.|.|.|.|
T Consensus         1 Y~P~i~~~~~p~~~~~~~G~~~~l~C~a~G~P~P~v   36 (84)
T d2oz4a3           1 YGPRLDERDCPGNWTWPENSQQTPMCQAWGNPLPEL   36 (84)
T ss_dssp             EEEECCGGGSCSEEEEETTCEECCCCCCEEESCCEE
T ss_pred             CCCceeecCCCccEEEeCCCEEEEEEEEeEcCccEE
Confidence            67877533  23456678999999999999999976

>d1vcaa2 b.1.1.4 (A:1-90) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.69  E-value=0.00058  Score=38.28  Aligned_cols=24  Identities=13%  Similarity=-0.007  Sum_probs=20.4

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -+.+..|..+.|.|.+.+.|.|.|
T Consensus        10 ~~~~~~G~~v~l~C~~~g~p~p~i   33 (90)
T d1vcaa2          10 RYLAQIGDSVSLTCSTTGCESPFF   33 (90)
T ss_dssp             EEEEETTSCEEEEEEEESCSSCEE
T ss_pred             cEEEECCCEEEEEEeccCCCCceE
Confidence            344578999999999999999875

>d1rhfa2 b.1.1.4 (A:98-182) Tyrosine-protein kinase receptor tyro3, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Tyrosine-protein kinase receptor tyro3, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.68  E-value=0.00096  Score=37.79  Aligned_cols=32  Identities=22%  Similarity=0.181  Sum_probs=27.4

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCC-CC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHA-DP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a-~V   69 (70)
                      |.|..+-+-+....|+.+.|.|.+.|.|.| +|
T Consensus         2 P~f~~~P~~~~v~~G~~~~l~C~~~g~P~P~~i   34 (85)
T d1rhfa2           2 PFFTVEPKDLAVPPNAPFQLSCEAVGPPEPVTI   34 (85)
T ss_dssp             CEEEECCCCEEECTTCCEEEEEEEECSSSCCEE
T ss_pred             CcEEEeCCcEEEcCCCEEEEEEEEecCCcceEE
Confidence            777777777778899999999999999987 44

>d1cs6a4 b.1.1.4 (A:300-388) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=96.60  E-value=0.00076  Score=38.14  Aligned_cols=32  Identities=13%  Similarity=0.234  Sum_probs=25.3

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+...-+-+.+..|..+.|.|.+.|.|.|.|
T Consensus         2 P~f~~~~~~~~v~~G~~~~l~C~~~g~P~p~v   33 (89)
T d1cs6a4           2 PDWLDVITDTEADIGSDLRWSCVASGKPRPAV   33 (89)
T ss_dssp             EEEEECCCCEEEETTCCEEEECEEEEESCCEE
T ss_pred             CCeEEECCCEEECCCCcEEEEEEEEEEcCCEE
Confidence            55444444566788999999999999999875

>d1wwca_ b.1.1.4 (A:) NT3 binding domain of trkC receptor {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: NT3 binding domain of trkC receptor
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.50  E-value=0.00049  Score=39.62  Aligned_cols=34  Identities=12%  Similarity=0.086  Sum_probs=24.1

Q ss_pred             EeecCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         33 NQKNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        33 ~V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +|+|||.|.--..   ...+....|.|.|.|+|.|.|
T Consensus         1 tV~~PP~i~~~~~---~~~~~~~~i~~~v~G~P~P~v   34 (105)
T d1wwca_           1 TVYYPPRVVSLEE---PELRLEHCIEFVVRGNPPPTL   34 (105)
T ss_dssp             CCCCCCCCCCCCC---CCCCCEEEEEEEEECSSCCEE
T ss_pred             CEEcCCeeEEeCC---CEEEEEEEEEEEEEEeCCCeE
Confidence            4899999853322   123455668889999999975

>d2fcba1 b.1.1.4 (A:6-90) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=96.45  E-value=0.0013  Score=36.76  Aligned_cols=32  Identities=19%  Similarity=0.410  Sum_probs=26.4

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      +|.|++..+.....+|..++|.|.+.+.|.+.
T Consensus         4 kp~i~~~P~~~~v~~G~~v~L~C~~~~~~~~~   35 (85)
T d2fcba1           4 KAVLKLEPQWINVLQEDSVTLTCRGTHSPESD   35 (85)
T ss_dssp             BCEEEEESCCSEEETTCEEEEEEECSSCCCTT
T ss_pred             CCEEEECCCCeEEcCCCeEEEEEEEeecccee
Confidence            46788876666667899999999999999764

>d1biha1 b.1.1.4 (A:5-98) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.40  E-value=0.00075  Score=37.75  Aligned_cols=32  Identities=19%  Similarity=0.251  Sum_probs=27.3

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHAD   68 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~   68 (70)
                      +|.|..+.+-+...+|+.++|.|.+.+.|.+.
T Consensus         2 ~P~i~~~p~~~~v~~g~~~~l~C~~~g~p~p~   33 (94)
T d1biha1           2 YPVLKDQPAEVLFRENNPTVLECIIEGNDQGV   33 (94)
T ss_dssp             CCEECCCCSEEEEETTSCEEECCCEESCCSSC
T ss_pred             CCEEEecCCcEEEeCCCeEEEEEEecCCCCee
Confidence            47777777778889999999999999999763

>d1gl4b_ b.1.1.4 (B:) Perlecan Ig3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Perlecan Ig3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=96.29  E-value=0.0021  Score=35.34  Aligned_cols=33  Identities=15%  Similarity=0.222  Sum_probs=25.7

Q ss_pred             CCeEEEec-ceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         37 LPEIEVER-SWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        37 pPeI~v~~-~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      ||.|.++. ..+...+|..+.|.|.+. +.|.+.|
T Consensus         1 P~~v~~~~p~~~~v~~G~~~~l~C~~~~~~p~~~v   35 (89)
T d1gl4b_           1 PIMVTVEEQRSQSVRPGADVTFICTAKSKSPAYTL   35 (89)
T ss_dssp             CEEEEECSCCEEEECTTCCEEEEEEEEESSSCCEE
T ss_pred             CCEEEEcCCCeEEEeCCCcEEEEEEccCCCCCCEE
Confidence            67788864 356678999999999998 5677654

>d1biha3 b.1.1.4 (A:210-306) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=96.27  E-value=0.0039  Score=35.20  Aligned_cols=24  Identities=17%  Similarity=0.326  Sum_probs=21.2

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -+.+..|..+.|.|.+.|.|.|.|
T Consensus        12 ~~~~~~G~~v~l~C~~~g~P~~~v   35 (97)
T d1biha3          12 DMMAKAGDVTMIYCMYGSNPMGYP   35 (97)
T ss_dssp             SEEEETTSCEEEEEEEECSSCCCC
T ss_pred             CEEEecCCeEEEEEEEEEecCCEE
Confidence            456688999999999999999976

>d2cqva1 b.1.1.4 (A:8-108) Telokin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Telokin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.24  E-value=0.0014  Score=37.27  Aligned_cols=31  Identities=13%  Similarity=-0.072  Sum_probs=23.7

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .|....+-+....|+.+.|.|.+.|.|.+.|
T Consensus         2 ~~~~~p~~~~v~~G~~~~l~C~v~g~p~p~v   32 (101)
T d2cqva1           2 QIIQFPEDQKVRAGESVELFGKVTGTQPITC   32 (101)
T ss_dssp             EESCCCCSEEEETTCCEEEEEEEESSSSCEE
T ss_pred             eEEeeCCcEEEeCCCcEEEEEEEEecCCCEE
Confidence            3333334556788999999999999999865

>d1gsma1 b.1.1.4 (A:1-90) Mucosal addressin cell adhesion molecule-1 (MADCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Mucosal addressin cell adhesion molecule-1 (MADCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.08  E-value=0.002  Score=36.72  Aligned_cols=33  Identities=24%  Similarity=0.241  Sum_probs=27.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      |+.|..+.+.+...+|..++|.|.+. +.|.+.|
T Consensus         3 P~~i~~p~~~~~~~~G~~~~l~C~~~~g~p~p~v   36 (90)
T d1gsma1           3 PLQVEPPEPVVAVALGASRQLTCRLACADRGASV   36 (90)
T ss_dssp             SEEEESCCSEEEEETTCCEEEEEEECCSSTTCEE
T ss_pred             CcEEeCCCCeEEEEeCCcEEEEEEecCCCCccEE
Confidence            56677777778888999999999885 7888765

>d2c9aa1 b.1.1.4 (A:184-279) Receptor-type tyrosine-protein phosphatase mu {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Receptor-type tyrosine-protein phosphatase mu
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.04  E-value=0.0041  Score=34.74  Aligned_cols=31  Identities=19%  Similarity=0.177  Sum_probs=23.9

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      |.+. .-+-+...+|+.++|.|.+.+.|.|.+
T Consensus         3 P~f~-~~~~~~v~~G~~v~l~C~~~g~p~p~~   33 (96)
T d2c9aa1           3 PHFL-RIQNVEVNAGQFATFQCSAIGRTVAGD   33 (96)
T ss_dssp             CEEC-CCCCEEECSSSCEEEEEEEESCCCSSC
T ss_pred             Ceec-ccCCEEEeCCCEEEEEEEEeecCCCcE
Confidence            5554 334466788999999999999998754

>d2nxyb2 b.1.1.3 (B:1098-1181) CD4 C2-set domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD4 C2-set domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=96.02  E-value=0.0013  Score=36.62  Aligned_cols=23  Identities=13%  Similarity=0.024  Sum_probs=20.1

Q ss_pred             EEeccCCcEEEEEEEeeeCCCCC
Q psy15736         47 VHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ++..+|+.++|.|.+.|.|.|.|
T Consensus         9 ~~v~~G~~~~L~C~~~g~p~P~i   31 (84)
T d2nxyb2           9 THLLQGQSLTLTLESPPGSSPSV   31 (84)
T ss_dssp             SCEETTCCEEEEEECCTTCCCEE
T ss_pred             eEEECCCeEEEEEEeEcCCchhe
Confidence            35578999999999999999975

>d1n26a1 b.1.1.4 (A:1-93) Interleukin-6 receptor alpha chain, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Interleukin-6 receptor alpha chain, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.99  E-value=0.00075  Score=39.06  Aligned_cols=33  Identities=24%  Similarity=0.267  Sum_probs=29.5

Q ss_pred             ecCCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         35 KNLPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        35 ~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      .-+|.|+++.+.+.+..|+.++|.|.+.+.|.+
T Consensus         4 ~~~P~~~~~~~~v~~~~G~~v~L~C~~~g~~~~   36 (93)
T d1n26a1           4 RRCPAQEVARGVLTSLPGDSVTLTCPGVEPEDN   36 (93)
T ss_dssp             SCCCCCCCCTTEEEECTTCCEEEECTTSCTTCC
T ss_pred             CCCCcEEeCCCCEEEeCCCcEEEEEEeecCCCC
Confidence            457999999999999999999999999987754

>d3dara1 b.1.1.4 (A:153-249) Fibroblast growth factor receptor, FGFR {Human (Homo sapiens), FGFR2a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fibroblast growth factor receptor, FGFR
species: Human (Homo sapiens), FGFR2a [TaxId: 9606]

Probab=95.84  E-value=0.002  Score=36.48  Aligned_cols=26  Identities=8%  Similarity=0.133  Sum_probs=21.8

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +.......|+.+.|.|.+.|.|.|.|
T Consensus        12 ~~~~~v~~G~~v~l~C~~~g~P~p~i   37 (97)
T d3dara1          12 KRLHAVPAANTVKFRCPAGGNPMPTM   37 (97)
T ss_dssp             CCEEEECTTCCEEEECCEEEESCCEE
T ss_pred             cccEEECCCCcEEEEEEEeEECCCEE
Confidence            34556678999999999999999875

>d1rhfa1 b.1.1.1 (A:7-97) Tyrosine-protein kinase receptor tyro3, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Tyrosine-protein kinase receptor tyro3, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.71  E-value=0.0042  Score=34.31  Aligned_cols=24  Identities=21%  Similarity=0.296  Sum_probs=20.6

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -+.+..|+.++|.|.+.+.|.+.|
T Consensus         5 ~~~v~~G~~~~l~C~v~g~p~p~v   28 (91)
T d1rhfa1           5 KLTVSQGQPVKLNCSVEGMEEPDI   28 (91)
T ss_dssp             EEEEETTCCEEEEEEEESCSSCCE
T ss_pred             eEEEcCCCeEEEEEEEEecCCceE
Confidence            345578999999999999999876

>d1nbqa2 b.1.1.4 (A:130-233) Junction adhesion molecule, JAM, C-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.69  E-value=0.00075  Score=38.03  Aligned_cols=33  Identities=18%  Similarity=0.176  Sum_probs=22.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      ||.|.+-..-....+|..++|.|.+ .+.|.+.|
T Consensus         2 PP~~p~~~~~~~v~~G~~v~l~C~~~~g~p~p~v   35 (104)
T d1nbqa2           2 PPSKPTVNIPSSATIGNRAVLTCSEQDGSPPSEY   35 (104)
T ss_dssp             CCCCCCCCCBSEEETTSCEEECCCCCSCBSCCEE
T ss_pred             CCcccccCCCCEEecCCcEEEEEEeecCCCCCEE
Confidence            4544443333345679999999998 57998865

>d1tnna_ b.1.1.4 (A:) Titin {Human (Homo sapiens), different modules [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Titin
species: Human (Homo sapiens), different modules [TaxId: 9606]

Probab=95.65  E-value=0.0019  Score=36.14  Aligned_cols=24  Identities=25%  Similarity=0.306  Sum_probs=21.4

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -+.+..|+.+.|.|.+.|.|.|.|
T Consensus         8 ~~~v~~G~~~~l~C~~~g~P~p~v   31 (91)
T d1tnna_           8 SMTVYEGESARFSCDTDGEPVPTV   31 (91)
T ss_dssp             CEECSSSSCCCEEEECCCSSCCCC
T ss_pred             CEEEeCCCcEEEEEEEEEEeCCeE
Confidence            366788999999999999999976

>d1vcaa1 b.1.1.3 (A:91-199) Vascular cell adhesion molecule-1 (VCAM-1) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Vascular cell adhesion molecule-1 (VCAM-1)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=95.63  E-value=0.0071  Score=35.12  Aligned_cols=28  Identities=25%  Similarity=0.361  Sum_probs=23.2

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEee-eCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      +|+|++..+++   .|+.++|.|.|.+ .|.+
T Consensus         4 ~P~I~~~~~l~---~G~~~~l~C~v~~~~P~~   32 (109)
T d1vcaa1           4 DPEIHLSGPLE---AGKPITVKCSVADVYPFD   32 (109)
T ss_dssp             CCEEEESSCEE---TTSCEEEEEEEEEEBSGG
T ss_pred             CCEEecCCCcc---CCCeEEEEeEeCCcCCCC
Confidence            49999988754   6999999999986 6765

>d1epfa1 b.1.1.4 (A:1-97) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.60  E-value=0.0056  Score=34.32  Aligned_cols=25  Identities=20%  Similarity=0.218  Sum_probs=19.8

Q ss_pred             ceEEeccCCcEEEEEEEeeeCC-CCC
Q psy15736         45 SWVHSGEGYEAQLVCIVHAEPH-ADP   69 (70)
Q Consensus        45 ~~Vha~~G~~a~L~CiV~A~P~-a~V   69 (70)
                      +-+...+|+.+.|.|.+.+.|. +.|
T Consensus         8 ~~~~v~~G~~~~l~C~v~g~p~~~~v   33 (97)
T d1epfa1           8 SQGEISVGESKFFLCQVAGDAKDKDI   33 (97)
T ss_dssp             SSEEEETTCCEEEEEEECCCSCCCEE
T ss_pred             CCEEEccCCcEEEEEEEEeccCCCEE
Confidence            4455678999999999999986 443

>d1epfa2 b.1.1.4 (A:98-189) Neural cell adhesion molecule (NCAM) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Neural cell adhesion molecule (NCAM)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=95.58  E-value=0.0039  Score=35.01  Aligned_cols=31  Identities=19%  Similarity=0.116  Sum_probs=24.2

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+...-+-+...+|..+.|.|.+.+.|.+.|
T Consensus         3 ~F~~~P~~~~v~~G~~~~l~C~v~g~p~p~v   33 (92)
T d1epfa2           3 MFKNAPTPQEFKEGEDAVIVCDVVSSLPPTI   33 (92)
T ss_dssp             EEEECCSSEECCTTSCEEECCEEECSSCCEE
T ss_pred             EEEEcCCCEEEeCCCcEEEEEEEeecCCCeE
Confidence            3333444567789999999999999999865

>d1f97a2 b.1.1.4 (A:129-238) Junction adhesion molecule, JAM, C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Junction adhesion molecule, JAM, C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=95.32  E-value=0.0037  Score=35.44  Aligned_cols=29  Identities=34%  Similarity=0.507  Sum_probs=21.7

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEe-eeCCCCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVH-AEPHADP   69 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~-A~P~a~V   69 (70)
                      |.|.++.+   +.+|..+.|.|.+. +.|.+.|
T Consensus         6 p~~~~~~~---v~~G~~v~L~C~~~~g~p~~~v   35 (110)
T d1f97a2           6 PTISVPSS---VTIGNRAVLTCSEHDGSPPSEY   35 (110)
T ss_dssp             CEEECCSE---EETTSCEEEEEECSCCBSCCEE
T ss_pred             ceeCCCCE---EecCCeEEEEEEeecCCCCCEE
Confidence            55555543   45799999999985 7998865

>d1dr9a2 b.1.1.3 (A:106-200) CD80, second domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: CD80, second domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.85  E-value=0.013  Score=33.91  Aligned_cols=31  Identities=13%  Similarity=0.140  Sum_probs=22.3

Q ss_pred             ecC-CeEEEecceEEeccCCcEEEEEEEee-eCCCCC
Q psy15736         35 KNL-PEIEVERSWVHSGEGYEAQLVCIVHA-EPHADP   69 (70)
Q Consensus        35 ~yp-PeI~v~~~~Vha~~G~~a~L~CiV~A-~P~a~V   69 (70)
                      +|| |.|++-.    ..-|..++|.|.+.+ +|++.|
T Consensus         2 ~f~~P~V~~~~----~~s~~~~~L~C~~~g~~P~~~V   34 (95)
T d1dr9a2           2 DFPTPSISDFE----IPTSNIRRIICSTSGGFPEPHL   34 (95)
T ss_dssp             CCCCCEEEEEE----CSSTTEEEEEEEEEEESSCEEE
T ss_pred             cCCCCEEEecc----cCCCCEEEEEEEECcccCCCEE
Confidence            355 7876442    345788999999998 598754

>d2avga1 b.1.1.4 (A:1-110) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=94.69  E-value=0.016  Score=32.96  Aligned_cols=21  Identities=10%  Similarity=-0.146  Sum_probs=18.3

Q ss_pred             eEEeccCCcEEEEEEEeeeCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      -+.+..|..++|.|.|.|.|.
T Consensus        13 ~~~v~~G~~v~l~C~v~g~p~   33 (110)
T d2avga1          13 DGEVTVGGSITFSARVAGASL   33 (110)
T ss_dssp             CEEEETTSEEEEEEEEECCSC
T ss_pred             eEEEECCCCEEEEEeecCCCC
Confidence            366788999999999999994

>d1nezg_ b.1.1.1 (G:) CD8 {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=94.54  E-value=0.027  Score=33.52  Aligned_cols=30  Identities=23%  Similarity=0.347  Sum_probs=25.1

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      +|+|....+-+.+.+|+.++|.|.+.....
T Consensus         1 a~~~~~~P~~~~~~~G~~vtL~C~~~~~~~   30 (122)
T d1nezg_           1 APELRIFPKKMDAELGQKVDLVCEVLGSVS   30 (122)
T ss_dssp             CCEEEEESSCEEECTTCCEEEEEEEESCCS
T ss_pred             CCceEEcCCEEEECCCCCEEEEEEEcCccC
Confidence            588998877888899999999999866543

>d1x44a1 b.1.1.4 (A:8-97) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.68  E-value=0.015  Score=32.27  Aligned_cols=27  Identities=22%  Similarity=0.177  Sum_probs=21.0

Q ss_pred             EecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         42 VERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        42 v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+-+-+.+.+|+++.|.|.+ +.|.+.|
T Consensus         5 ~~l~~~~v~~G~~v~l~C~v-~~p~~~v   31 (90)
T d1x44a1           5 KQLEDTTAYCGERVELECEV-SEDDANV   31 (90)
T ss_dssp             BCCCCEEEETTEEEEEEEEC-SSSSCCC
T ss_pred             cCCCCEEEeCCCcEEEEEEE-CCCCceE
Confidence            34445677899999999999 5788765

>d2dava1 b.1.1.4 (A:8-120) Myosin-binding protein C, slow-type {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Myosin-binding protein C, slow-type
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.62  E-value=0.019  Score=32.67  Aligned_cols=21  Identities=19%  Similarity=0.083  Sum_probs=18.2

Q ss_pred             eEEeccCCcEEEEEEEeeeCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      -+.+.+|..++|.|.|.|.|.
T Consensus         9 ~~~v~~G~~v~l~C~v~g~p~   29 (113)
T d2dava1           9 GGTVKVGEDITFIAKVKAEDL   29 (113)
T ss_dssp             CCEEETTCCEEEEEEEECCCS
T ss_pred             eEEEeCCCEEEEEEEEccCCC
Confidence            356778999999999999994

>d2aw2a1 b.1.1.1 (A:34-137) B- and T-lymphocyte attenuator CD272 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: B- and T-lymphocyte attenuator CD272
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.54  E-value=0.024  Score=31.91  Aligned_cols=24  Identities=17%  Similarity=0.005  Sum_probs=19.5

Q ss_pred             eEEeccCCcEEEEEEEeeeCC-CCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPH-ADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~-a~V   69 (70)
                      -....+|+.+.|.|.|.+.|. |.|
T Consensus        12 ~~~v~~G~~v~L~C~v~g~p~~P~v   36 (104)
T d2aw2a1          12 EHSILAGDPFELECPVKYCANRPHV   36 (104)
T ss_dssp             EEEEETTSCEEEEEEEECSSSCCEE
T ss_pred             eEEEeCCCeEEEEEEEEeeCCCCEE
Confidence            344578999999999999995 654

>d1pkoa_ b.1.1.1 (A:) Myelin oligodendrocyte glycoprotein (MOG) {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Myelin oligodendrocyte glycoprotein (MOG)
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=93.40  E-value=0.056  Score=30.61  Aligned_cols=28  Identities=21%  Similarity=0.205  Sum_probs=21.2

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |..+...|.+.+|..++|.|.+.+.+.+
T Consensus         5 V~~p~~~V~~~~G~~v~L~C~~~~~~~~   32 (126)
T d1pkoa_           5 VIGPGHPIRALVGDEAELPCRISPGKNA   32 (126)
T ss_dssp             EECCSSCEEEETTSCEEEEEEEESCCCC
T ss_pred             EECCCCCEEEEcCCcEEEEEEEECcCCC
Confidence            4455556888999999999999754443

>d1eaja_ b.1.1.1 (A:) Coxsackie virus and adenovirus receptor (Car), domain 1 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: Coxsackie virus and adenovirus receptor (Car), domain 1
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.30  E-value=0.015  Score=32.63  Aligned_cols=29  Identities=21%  Similarity=0.336  Sum_probs=24.4

Q ss_pred             CeEEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         38 PEIEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        38 PeI~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      ..|+++.+.|.+..|..++|.|.+.+.|.
T Consensus         5 l~Vt~p~~~v~~~~G~~v~L~C~~~~~~~   33 (124)
T d1eaja_           5 LSITTPEEMIEKAKGETAYLPCKFTLSPE   33 (124)
T ss_dssp             CEESSSEEEEEEETTSCEEECCBEECCTT
T ss_pred             eEEEccCceEEEECCCcEEEeEEEecccC
Confidence            46777888899999999999999976654

>d1zxqa1 b.1.1.3 (A:87-192) Intercellular cell adhesion molecule-2 (ICAM-2) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C2 set domains
domain: Intercellular cell adhesion molecule-2 (ICAM-2)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=93.22  E-value=0.016  Score=33.42  Aligned_cols=21  Identities=24%  Similarity=0.319  Sum_probs=15.9

Q ss_pred             EEeccCCcEEEEEEEee-eCCC
Q psy15736         47 VHSGEGYEAQLVCIVHA-EPHA   67 (70)
Q Consensus        47 Vha~~G~~a~L~CiV~A-~P~a   67 (70)
                      ....+|..++|.|.|.+ .|.+
T Consensus        12 ~~v~~G~~v~l~C~v~g~~p~p   33 (106)
T d1zxqa1          12 TLVAVGKSFTIECRVPTVEPLD   33 (106)
T ss_dssp             SEECTTSEEEEEEEECSCBCGG
T ss_pred             CEEeCCCEEEEEEEEeCcccCC
Confidence            34567999999999986 4443

>d1biha2 b.1.1.4 (A:99-209) Hemolin {Moth (Hyalophora cecropia) [TaxId: 7123]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Hemolin
species: Moth (Hyalophora cecropia) [TaxId: 7123]

Probab=93.14  E-value=0.0076  Score=35.46  Aligned_cols=21  Identities=33%  Similarity=0.390  Sum_probs=18.5

Q ss_pred             eccCCcEEEEEEE-eeeCCCCC
Q psy15736         49 SGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        49 a~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      +.+|+.++|.|.+ .|+|.|.|
T Consensus        14 ~~EG~~~~L~C~v~~G~P~p~v   35 (111)
T d1biha2          14 PIEGRPFQLDCVLPNAYPKPLI   35 (111)
T ss_dssp             CBTTEEEEECCCCCEEESCCEE
T ss_pred             ccCCCeEEEEEEcccCCCCCEE
Confidence            4689999999986 89999876

>d1pd6a_ b.1.1.4 (A:) Cardiac myosin binding protein C, different domains {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Cardiac myosin binding protein C, different domains
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.84  E-value=0.052  Score=30.26  Aligned_cols=25  Identities=12%  Similarity=0.159  Sum_probs=19.2

Q ss_pred             cceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .+.+....|+.+.|.|.|. .|.+.|
T Consensus        13 ~~~~~v~~G~~v~l~c~v~-~p~~~v   37 (94)
T d1pd6a_          13 EPAYQVSKGHKIRLTVELA-DHDAEV   37 (94)
T ss_dssp             CSEEEEETTSCEEEEEECS-SSSSCC
T ss_pred             CCCEEECcCCeEEEEEEEC-CCCceE
Confidence            4445567899999999995 588765

>d1de4a1 b.1.1.2 (A:182-275) Hemochromatosis protein Hfe, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Hemochromatosis protein Hfe, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=92.39  E-value=0.13  Score=29.67  Aligned_cols=28  Identities=18%  Similarity=0.203  Sum_probs=21.2

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      -||.|.+-+    ...+..++|.|.+.++ |+.
T Consensus         3 vpP~V~v~~----~~~~~~~tL~C~~~gFyP~~   31 (94)
T d1de4a1           3 VPPLVKVTH----HVTSSVTTLRCRALNYYPQN   31 (94)
T ss_dssp             BCCEEEEEE----EECSSCEEEEEEEEEEBSSC
T ss_pred             CCCEEEEEE----cCCCCCEEEEEEEeeEECCC
Confidence            489998743    3457789999999995 654

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=92.38  E-value=0.034  Score=30.83  Aligned_cols=27  Identities=22%  Similarity=0.262  Sum_probs=20.5

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      +|.|.+.+..|  .+|+.++|.|.+.+.|
T Consensus         5 ~P~i~~~~~~v--~~g~~v~l~C~~~~~~   31 (96)
T d1l6za2           5 QPFLQVTNTTV--KELDSVTLTCLSNDIG   31 (96)
T ss_dssp             CCCEECSCSEE--CTTSCEEEEECCCCSS
T ss_pred             CCeEEcCceEE--eCCCeEEEEEccCCCC
Confidence            57777766554  6799999999987743

>d1cs6a2 b.1.1.4 (A:104-208) Axonin-1 {Chicken (Gallus gallus) [TaxId: 9031]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Axonin-1
species: Chicken (Gallus gallus) [TaxId: 9031]

Probab=91.96  E-value=0.02  Score=32.70  Aligned_cols=26  Identities=23%  Similarity=0.286  Sum_probs=21.9

Q ss_pred             cceEEeccCCcEEEEEEE-eeeCCCCC
Q psy15736         44 RSWVHSGEGYEAQLVCIV-HAEPHADP   69 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV-~A~P~a~V   69 (70)
                      ++-|...+|+.+.|.|.+ .+.|.+.|
T Consensus        11 ~~~v~v~eG~~~~l~C~~~~~~p~~~v   37 (105)
T d1cs6a2          11 RDPVKITEGWGVMFTCSPPPHYPALSY   37 (105)
T ss_dssp             CCCEEEETTSCEEECCCCCSEESCCEE
T ss_pred             CCCEEEeCCCeEEEEEEccCCCCCCEE
Confidence            456778899999999998 78998865

>d1t7va1 b.1.1.2 (A:184-277) Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Zinc-alpha-2-glycoprotein, ZAG, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=91.64  E-value=0.17  Score=28.62  Aligned_cols=27  Identities=26%  Similarity=0.479  Sum_probs=21.0

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      ||.|.+-.   +...|.+++|.|.+.++ |+
T Consensus         3 PP~V~v~~---~~~~~~~~tL~C~~~gFyP~   30 (94)
T d1t7va1           3 PPSVVVTS---HQAPGEKKKLKCLAYDFYPG   30 (94)
T ss_dssp             CCEEEEEE---EECTTSCEEEEEEEEEEBSS
T ss_pred             CCEeEEec---cCCCCCCEEEEEEEEeEECC
Confidence            88888854   34558899999999994 54

>d2mhaa1 b.1.1.2 (A:182-270) Class I MHC, alpha-3 domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=91.25  E-value=0.14  Score=28.89  Aligned_cols=31  Identities=26%  Similarity=0.255  Sum_probs=22.5

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      .||.|.+-.   +...+.+++|.|.+.++-...|
T Consensus         2 ~pP~v~v~~---~~~~~~~~~L~C~a~gFyP~~i   32 (89)
T d2mhaa1           2 DSPKAHVTH---HSRPEDKVTLRCWALGFYPADI   32 (89)
T ss_dssp             BCCEEEECC---EESCSSEEEEEEEEESCBSSCC
T ss_pred             CCCEeEEEc---cCCCCCCEEEEEEEEeEECCCC
Confidence            478888844   3455779999999999655443

>d1k5na1 b.1.1.2 (A:182-276) Class I MHC, alpha-3 domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC, alpha-3 domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.71  E-value=0.23  Score=28.21  Aligned_cols=30  Identities=23%  Similarity=0.166  Sum_probs=21.8

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      ||.+.+-..   ...+..++|.|.+.++-...|
T Consensus         3 PP~v~v~~~---~~~~~~~~L~C~~~gFyP~~i   32 (95)
T d1k5na1           3 PPKTHVTHH---PISDHEATLRCWALGFYPAEI   32 (95)
T ss_dssp             CCEEEEEEE---EEETTEEEEEEEEEEEBSSCC
T ss_pred             CCccEEEec---cCCCCCEEEEEEEEeEeCCCC
Confidence            788887532   233668999999999876654

>d1k5nb_ b.1.1.2 (B:) beta2-microglobulin {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Human (Homo sapiens) [TaxId: 9606]

Probab=90.00  E-value=0.26  Score=28.49  Aligned_cols=32  Identities=25%  Similarity=0.289  Sum_probs=23.1

Q ss_pred             eecCCeEEEe-cceEEeccCCcEEEEEEEeeeCCC
Q psy15736         34 QKNLPEIEVE-RSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        34 V~ypPeI~v~-~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      |+=||.|++- +.-  +..|..++|.|.+.++=.+
T Consensus         2 v~~~P~V~v~~~~~--~~~~~~~tL~C~~~gFyP~   34 (100)
T d1k5nb_           2 IQRTPKIQVYSRHP--AENGKSNFLNCYVSGFHPS   34 (100)
T ss_dssp             CCBCCEEEEEESSC--CCTTSCEEEEEEEEEEBSS
T ss_pred             ccCCCeeEEEcCCc--ccCCCCEEEEEEECccCCC
Confidence            4568988883 322  2568999999999998443

>d1tiua_ b.1.1.4 (A:) Twitchin {Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Twitchin
species: Human (Homo sapiens), Ig repeat 27 [TaxId: 9606]

Probab=89.97  E-value=0.042  Score=30.55  Aligned_cols=26  Identities=19%  Similarity=0.056  Sum_probs=20.5

Q ss_pred             ecceEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         43 ERSWVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        43 ~~~~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      +-+-+...+|.++.|.|.+ +.|.+.|
T Consensus         7 ~l~d~~v~~G~~~~~~c~v-s~p~~~v   32 (89)
T d1tiua_           7 PLYGVEVFVGETAHFEIEL-SEPDVHG   32 (89)
T ss_dssp             CCCCEEEETTSCCCEEEBC-SSSSCCC
T ss_pred             CCcCEEEeCCCcEEEEEEE-CCCCcEE
Confidence            3445667889999999998 5788865

>d1lk2b_ b.1.1.2 (B:) beta2-microglobulin {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: beta2-microglobulin
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=88.26  E-value=0.32  Score=27.70  Aligned_cols=31  Identities=23%  Similarity=0.274  Sum_probs=21.4

Q ss_pred             eecCCeEEEecceEEeccCCcEEEEEEEeeeC
Q psy15736         34 QKNLPEIEVERSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        34 V~ypPeI~v~~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      |+=||.|.+-.+- -...|+.++|.|.+.++=
T Consensus         1 v~~~P~V~v~~~~-~~~~~~~~tL~C~v~gf~   31 (99)
T d1lk2b_           1 IQKTPQIQVYSRH-PPENGKPNILNCYVTQFH   31 (99)
T ss_dssp             CCBCCEEEEEESS-CCCTTSCEEEEEEEEEEB
T ss_pred             CCCCCEEEEEcCC-CccCCCcEEEEEEEEEEE
Confidence            3457888874221 124688999999999963

>d3frua1 b.1.1.2 (A:179-269) Fc (IgG) receptor, alpha-3 domain {Rat (Rattus norvegicus) [TaxId: 10116]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Fc (IgG) receptor, alpha-3 domain
species: Rat (Rattus norvegicus) [TaxId: 10116]

Probab=88.26  E-value=0.53  Score=26.58  Aligned_cols=29  Identities=17%  Similarity=0.392  Sum_probs=21.2

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee-CCC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PHA   67 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~a   67 (70)
                      -||.|++-..   ...+..++|.|.+.++ |+.
T Consensus         2 ~PP~V~v~~~---~~~~~~~~L~C~~~gF~P~~   31 (91)
T d3frua1           2 EPPSMRLKAR---PGNSGSSVLTCAAFSFYPPE   31 (91)
T ss_dssp             BCCEEEEEEE---ECSTTEEEEEEEEEEEBSSC
T ss_pred             CCCEEEEEec---CCCCCCEEEEEEEEeEECCC
Confidence            3899988543   3346689999999995 653

>d1l6za2 b.1.1.4 (A:108-203) Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain {Mouse (Mus musculus) [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Biliary glycoprotein C (CD66a, CEACAM1A[1,4]), C-terminal domain
species: Mouse (Mus musculus) [TaxId: 10090]

Probab=87.29  E-value=0.09  Score=28.96  Aligned_cols=24  Identities=8%  Similarity=-0.115  Sum_probs=18.7

Q ss_pred             hcCcCCCccce-eeeEEEEeecCCe
Q psy15736         16 EEEPEKDKEEV-RRRRRRNQKNLPE   39 (70)
Q Consensus        16 ~~~~~~~~~pv-s~~I~L~V~ypPe   39 (70)
                      -|.+++..... +..+.|+|.|+|.
T Consensus        72 ~C~a~N~~g~~~S~~~~L~V~~~Ps   96 (96)
T d1l6za2          72 QCEISNPVSVRRSNSIKLDIIFDPS   96 (96)
T ss_dssp             EEEEESSSCCEECCCCEEEECCSCC
T ss_pred             EEEEEeCCCCeEEEeEEEEEEcCCC
Confidence            47888765544 6789999999993

>d1hxma1 b.1.1.1 (A:1-120) T-cell antigen receptor {Human (Homo sapiens), gamma-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), gamma-chain [TaxId: 9606]

Probab=86.46  E-value=0.35  Score=28.52  Aligned_cols=26  Identities=31%  Similarity=0.360  Sum_probs=20.5

Q ss_pred             eEEEecceEEeccCCcEEEEEEEeee
Q psy15736         39 EIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        39 eI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      +|..+.+.|.+.+|+.++|.|.+.+.
T Consensus         3 ~vv~~~~sv~v~~G~~vtL~C~~s~~   28 (120)
T d1hxma1           3 ELVPEHQTVPVSIGVPATLRCSMKGE   28 (120)
T ss_dssp             CEEESCSEEEEETTCCEEEEEEECSS
T ss_pred             eEeccCCCEEECCCCCEEEEEEEecc
Confidence            35556677778899999999998754

>d1fp5a2 b.1.1.2 (A:439-543) Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin heavy chain epsilon constant domain 4, CH4-epsilon
species: Human (Homo sapiens) [TaxId: 9606]

Probab=85.72  E-value=0.58  Score=26.80  Aligned_cols=28  Identities=18%  Similarity=0.267  Sum_probs=17.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      +|.|.+=.+.-.-..+..++|.|.+.++
T Consensus         4 ~P~V~v~~p~~~~~~~~~vtL~Clv~~f   31 (105)
T d1fp5a2           4 APEVYAFATPEWPGSRDKRTLACLIQNF   31 (105)
T ss_dssp             CCEEEEEECCCCSSSSCCEEEEEEEEEE
T ss_pred             CCEEEEECCChHHhcCCcEEEEEEEEee
Confidence            4555543332233346789999999985

>d1lp9e1 b.1.1.1 (E:0-117) T-cell antigen receptor {Mouse (Mus musculus), alpha-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Mouse (Mus musculus), alpha-chain [TaxId: 10090]

Probab=85.51  E-value=0.47  Score=27.33  Aligned_cols=27  Identities=19%  Similarity=0.257  Sum_probs=21.5

Q ss_pred             EEEecceEEeccCCcEEEEEEEeeeCC
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~P~   66 (70)
                      |+.+...|...+|..++|.|.......
T Consensus         4 V~Q~~~~v~v~~G~~vtL~C~~~~~~~   30 (115)
T d1lp9e1           4 VTQTEGLVTLTEGLPVMLNCTYQSTYS   30 (115)
T ss_dssp             EEECCSEEEEETTSCEEECEEEECSSS
T ss_pred             EEcCCCeEEECCCCCEEEEEEEeCCCc
Confidence            556677888899999999999875443

>d1muja1 b.1.1.2 (A:84-183) Class II MHC alpha chain, C-terminal domain {Mouse (Mus musculus), I-A group [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC alpha chain, C-terminal domain
species: Mouse (Mus musculus), I-A group [TaxId: 10090]

Probab=84.39  E-value=0.79  Score=26.43  Aligned_cols=28  Identities=21%  Similarity=0.224  Sum_probs=20.3

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      =||.|++-.+. -...|..++|.|.|.++
T Consensus         2 ~pP~V~v~p~~-~~~~~~~~tL~C~v~gF   29 (100)
T d1muja1           2 EAPQATVFPKS-PVLLGQPNTLICFVDNI   29 (100)
T ss_dssp             CCCEEEEEESS-CCCTTSCEEEEEEEEEE
T ss_pred             CCCEEEEEcCC-ccccCCCEEEEEEEEeE
Confidence            37888774322 13568999999999997

>d1hyrc1 b.1.1.2 (C:181-274) Class I MHC homolog, alpha-3 domain {Human (Homo sapiens), Mic-a [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class I MHC homolog, alpha-3 domain
species: Human (Homo sapiens), Mic-a [TaxId: 9606]

Probab=83.41  E-value=1  Score=25.16  Aligned_cols=28  Identities=21%  Similarity=0.308  Sum_probs=21.0

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee-CC
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE-PH   66 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~-P~   66 (70)
                      .||.|.+-+.   ...+..++|.|.+.++ |+
T Consensus         2 vpP~V~v~~~---~~~~~~~~L~C~~~gFyP~   30 (94)
T d1hyrc1           2 VPPMVNVTRS---EASEGNITVTCRASGFYPW   30 (94)
T ss_dssp             BCCEEEEEEC---CCSSSEEEEEEEEEEEBSS
T ss_pred             cCCEEEEEec---CCCCCCEEEEEEEEEEECC
Confidence            5899988543   3446689999999996 54

>d1ccza1 b.1.1.1 (A:1-93) CD2-binding domain of CD58, N-terminal domain {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD2-binding domain of CD58, N-terminal domain
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.06  E-value=0.15  Score=27.65  Aligned_cols=23  Identities=4%  Similarity=-0.166  Sum_probs=17.9

Q ss_pred             eEEeccCCcEEEEEEEeeeCCCCC
Q psy15736         46 WVHSGEGYEAQLVCIVHAEPHADP   69 (70)
Q Consensus        46 ~Vha~~G~~a~L~CiV~A~P~a~V   69 (70)
                      -|++.+|..++|.|.+. .|.+.|
T Consensus         4 ~v~~~~G~sVtl~c~~~-~p~~~v   26 (93)
T d1ccza1           4 QIYGVVYGNVTFHVPSN-VPLKEV   26 (93)
T ss_dssp             EEEEETTCCEEECCCCS-SCCSCE
T ss_pred             EEEEEECCCEEEEecCC-CCCcEE
Confidence            47889999999999875 466544

>d2fcba2 b.1.1.4 (A:91-178) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), IIb [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), IIb [TaxId: 9606]

Probab=82.91  E-value=0.63  Score=25.40  Aligned_cols=18  Identities=22%  Similarity=0.213  Sum_probs=14.3

Q ss_pred             eccCCcEEEEEEEeeeCC
Q psy15736         49 SGEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        49 a~~G~~a~L~CiV~A~P~   66 (70)
                      ..+|+.++|.|.+.+.|.
T Consensus        12 v~eG~~v~L~C~~~~~~p   29 (88)
T d2fcba2          12 FQEGETIVLRCHSWKDKP   29 (88)
T ss_dssp             ECTTCCEEEEEEEGGGCC
T ss_pred             EecCCeEEEEEEecCCCC
Confidence            357999999999976543

>d1rzfl2 b.1.1.2 (L:109-210) Immunoglobulin light chain lambda constant domain, CL-lambda {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Immunoglobulin light chain lambda constant domain, CL-lambda
species: Human (Homo sapiens) [TaxId: 9606]

Probab=82.63  E-value=0.44  Score=26.98  Aligned_cols=31  Identities=16%  Similarity=0.217  Sum_probs=19.5

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEEeeeCCC
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIVHAEPHA   67 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV~A~P~a   67 (70)
                      +|.|.+-.+.-....|..++|.|.|.++-..
T Consensus         5 ~P~V~~~~ps~~~~~~~~~tL~C~v~~f~P~   35 (102)
T d1rzfl2           5 APSVTLFPPSSEELQANKATLVCLISDFYPG   35 (102)
T ss_dssp             CCEEEEECCCHHHHHTTCEEEEEEEEEEBSS
T ss_pred             CCEEEEECCCHHHhcCCcEEEEEEEEeeCCC
Confidence            5666653322222336789999999995433

>d1hdmb1 b.1.1.2 (B:88-185) Class II MHC beta chain, C-terminal domain {Human (Homo sapiens), HLA-DM [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: C1 set domains (antibody constant domain-like)
domain: Class II MHC beta chain, C-terminal domain
species: Human (Homo sapiens), HLA-DM [TaxId: 9606]

Probab=82.44  E-value=0.97  Score=25.92  Aligned_cols=28  Identities=18%  Similarity=0.233  Sum_probs=21.0

Q ss_pred             cCCeEEEecceEEeccCCcEEEEEEEeee
Q psy15736         36 NLPEIEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        36 ypPeI~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      -||.|.+-.+.- ...|..++|.|.+.++
T Consensus         2 ~PP~V~v~~~~~-~~~~~~~tL~C~~~gF   29 (98)
T d1hdmb1           2 RPPSVQVAKTTP-FNTREPVMLACYVWGF   29 (98)
T ss_dssp             BCCEEEEEECCC-CSSSCSEEEEEEEEEE
T ss_pred             CCCEEEEEcCCC-ccCCCcEEEEEEEEEE
Confidence            378888864332 3457889999999997

>d1olla1 b.1.1.4 (A:1-95) Ligand binding domain of NK receptor NKp46 {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ligand binding domain of NK receptor NKp46
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.51  E-value=0.83  Score=25.63  Aligned_cols=24  Identities=17%  Similarity=0.206  Sum_probs=19.7

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEE
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIV   61 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV   61 (70)
                      +|.|++....+- ..|.+++|.|..
T Consensus         4 KPsLsa~P~~~V-~~G~~VTL~C~~   27 (95)
T d1olla1           4 KPFIWAEPHFMV-PKEKQVTICCQG   27 (95)
T ss_dssp             CCEEEEESCSEE-ETTCCEEEEEEC
T ss_pred             CCEEEeeCCCcc-cCCCcEEEEEec
Confidence            599999876665 479999999964

>d1fnla2 b.1.1.4 (A:87-175) Fc gamma receptor ectodomain (CD32) {Human (Homo sapiens), III [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Fc gamma receptor ectodomain (CD32)
species: Human (Homo sapiens), III [TaxId: 9606]

Probab=81.17  E-value=0.73  Score=25.24  Aligned_cols=17  Identities=18%  Similarity=0.161  Sum_probs=13.8

Q ss_pred             ccCCcEEEEEEEeeeCC
Q psy15736         50 GEGYEAQLVCIVHAEPH   66 (70)
Q Consensus        50 ~~G~~a~L~CiV~A~P~   66 (70)
                      .+|+.++|.|.+.+.|.
T Consensus        15 ~eG~~v~L~C~~~~~~p   31 (89)
T d1fnla2          15 KEEDPIHLRCHSWKNTA   31 (89)
T ss_dssp             ETTCCEEEEEEECTTCC
T ss_pred             ccCCeEEEEEEecCCCC
Confidence            57999999999985543

>d2atpb1 b.1.1.1 (B:1-115) CD8 {Mouse (Mus musculus), beta-chain [TaxId: 10090]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: CD8
species: Mouse (Mus musculus), beta-chain [TaxId: 10090]

Probab=81.02  E-value=0.76  Score=26.09  Aligned_cols=22  Identities=18%  Similarity=0.172  Sum_probs=17.3

Q ss_pred             cceEEeccCCcEEEEEEEeeeC
Q psy15736         44 RSWVHSGEGYEAQLVCIVHAEP   65 (70)
Q Consensus        44 ~~~Vha~~G~~a~L~CiV~A~P   65 (70)
                      ...+.+.+|+.++|.|.++...
T Consensus         5 P~~~~v~~G~sv~l~C~~~~~~   26 (115)
T d2atpb1           5 PSSLLVQTNHTAKMSCEVKSIS   26 (115)
T ss_dssp             CSEEEECTTSCEEEEEECCSSC
T ss_pred             CCcEEEcCCCCEEEEEEEeCCC
Confidence            3456678999999999987643

>d1ucta1 b.1.1.4 (A:2-100) Ig alpha Fc receptor, FCARI (CD89) {Human (Homo sapiens) [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: I set domains
domain: Ig alpha Fc receptor, FCARI (CD89)
species: Human (Homo sapiens) [TaxId: 9606]

Probab=80.55  E-value=0.66  Score=25.83  Aligned_cols=24  Identities=21%  Similarity=0.206  Sum_probs=18.5

Q ss_pred             CCeEEEecceEEeccCCcEEEEEEE
Q psy15736         37 LPEIEVERSWVHSGEGYEAQLVCIV   61 (70)
Q Consensus        37 pPeI~v~~~~Vha~~G~~a~L~CiV   61 (70)
                      +|.|++....+- ..|.+++|.|..
T Consensus         7 kPsLsa~P~~~V-~~G~~VTL~C~~   30 (99)
T d1ucta1           7 MPFISAKSSPVI-PLDGSVKIQCQA   30 (99)
T ss_dssp             CCCEEESSCSEE-ETTCCEEEEECC
T ss_pred             CCEEEecCCCce-eCCCeEEEEEcC
Confidence            499999765553 359999999964

>d2bnqd1 b.1.1.1 (D:2-114) T-cell antigen receptor {Human (Homo sapiens), alpha-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), alpha-chain [TaxId: 9606]

Probab=80.53  E-value=0.75  Score=26.19  Aligned_cols=25  Identities=16%  Similarity=0.153  Sum_probs=18.3

Q ss_pred             EEEecceEEeccCCcEEEEEEEeee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHAE   64 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A~   64 (70)
                      |+...+-|.+.+|+.++|.|.+...
T Consensus         3 V~Q~P~~v~v~~G~sv~L~C~~s~~   27 (113)
T d2bnqd1           3 VTQIPAALSVPEGENLVLNCSFTDS   27 (113)
T ss_dssp             EECSSSEEEEETTCCEEEEEEESCC
T ss_pred             cEeeCCEEEEcCCCCEEEEEEEecC
Confidence            3444455677889999999997653

>d1tvda_ b.1.1.1 (A:) T-cell antigen receptor {Human (Homo sapiens), delta-chain [TaxId: 9606]}

class: All beta proteins
fold: Immunoglobulin-like beta-sandwich
superfamily: Immunoglobulin
family: V set domains (antibody variable domain-like)
domain: T-cell antigen receptor
species: Human (Homo sapiens), delta-chain [TaxId: 9606]

Probab=80.12  E-value=0.52  Score=27.19  Aligned_cols=24  Identities=17%  Similarity=0.253  Sum_probs=18.3

Q ss_pred             EEEecceEEeccCCcEEEEEEEee
Q psy15736         40 IEVERSWVHSGEGYEAQLVCIVHA   63 (70)
Q Consensus        40 I~v~~~~Vha~~G~~a~L~CiV~A   63 (70)
                      |+...+.+.+.+|+.++|.|....
T Consensus         3 VtQ~p~~~~~~~G~~vtL~C~~~~   26 (116)
T d1tvda_           3 VTQSSPDQTVASGSEVVLLCTYDT   26 (116)
T ss_dssp             EECCSCCEEEETTCCEEECCEEEC
T ss_pred             EEccCCCEEEcCCCCEEEEEEEcC
Confidence            445556677789999999998753