Psyllid ID: psy15800

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------11
Protein Sequence
MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Secondary Structure (PSIPRED)
cccccccccEEEEEcccccccccHHHHHHcccEEcccccccHHHHHHHHHHHHHHHHccHHHHHHHHHHcccccccccccccccccccccEEEEEEcccEEEEEccccc
Secondary Structure Prediction (SSPRO)
ccHcccccccEEEEEccccccEcHHHHHHcccEEEccccccHHHHHHHHHHHHHHHHccHHHHHHHHHccccccccHHHHHHHcccccccHHHEEEEHHHHHHHccccc
Coil and Loop (DISEMBL)
mssragenlKVISTFsvghdhlhldqiksrgirvgtvgpvssdaVAEFNIGLAIAVSRRFqqghnciasgtekSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Flexible Loop (DISEMBL)
mssragenLKVIstfsvghdhlhldqiksrgiRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Low Complexity Region (SEG)
MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Disordered region (IsUnstruct)
********LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASG*******AITELITQSDTNHTQRCLASIMQLVYSTCY**
Disordered Region (DISOPRED)
*SS*AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYS*C***
Disordered Region (DISEMBL)
MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Disordered Region (DISPRO)
*****GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
ooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (MEMSAT_SVM)
oooooooooooooooooooooooooooooooooooooooohhhhhhhhhhhhhhhhiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQRCLASIMQLVYSTCYNQ
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	109	2.2.26 [Sep-21-2011]
Q91Z53	328	Glyoxylate reductase/hydr	yes	N/A	0.605	0.201	0.5	1e-10
Q9UBQ7	328	Glyoxylate reductase/hydr	yes	N/A	0.605	0.201	0.5	2e-10
A1RYE4	339	Glyoxylate reductase OS=T	yes	N/A	0.605	0.194	0.484	3e-10
P36234	322	Glycerate dehydrogenase O	N/A	N/A	0.788	0.267	0.352	7e-07
Q2FVW4	317	Putative 2-hydroxyacid de	yes	N/A	0.541	0.186	0.322	0.0001
Q6GEC9	317	Putative 2-hydroxyacid de	yes	N/A	0.541	0.186	0.322	0.0001
Q5HDQ4	317	Putative 2-hydroxyacid de	yes	N/A	0.541	0.186	0.322	0.0001
Q2FEI9	317	Putative 2-hydroxyacid de	N/A	N/A	0.541	0.186	0.322	0.0001
Q8NV80	317	Putative 2-hydroxyacid de	yes	N/A	0.541	0.186	0.322	0.0001
Q6G716	317	Putative 2-hydroxyacid de	yes	N/A	0.541	0.186	0.322	0.0001

>sp|Q91Z53|GRHPR_MOUSE Glyoxylate reductase/hydroxypyruvate reductase OS=Mus musculus GN=Grhpr PE=1 SV=1

 Score = 65.1 bits (157), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NL+VIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +  
Sbjct: 71  AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAI 130

Query: 65  NCIASG 70
             + +G
Sbjct: 131 EEVKNG 136

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.
Mus musculus (taxid: 10090)
EC: 1EC: .EC: 1EC: .EC: 1EC: .EC: 8EC: 1

>sp|Q9UBQ7|GRHPR_HUMAN Glyoxylate reductase/hydroxypyruvate reductase OS=Homo sapiens GN=GRHPR PE=1 SV=1

 Score = 64.7 bits (156), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 40/66 (60%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL LD+IK RGIRVG    V +D  AE  + L +   RR  +  
Sbjct: 71  AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 130

Query: 65  NCIASG 70
             + +G
Sbjct: 131 EEVKNG 136

Enzyme with hydroxy-pyruvate reductase, glyoxylate reductase and D-glycerate dehydrogenase enzymatic activities. Reduces hydroxypyruvate to D-glycerate, glyoxylate to glycolate oxidizes D-glycerate to hydroxypyruvate.

Homo sapiens (taxid: 9606)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 8

EC: 1

>sp|A1RYE4|GYAR_THEPD Glyoxylate reductase OS=Thermofilum pendens (strain Hrk 5) GN=gyaR PE=3 SV=1

 Score = 63.9 bits (154), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 32/66 (48%), Positives = 42/66 (63%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A  NLKVIST+SVG DH+ + +   RGI V     V +DAVAEF +GL +AV+RR  +  
Sbjct: 66  AAPNLKVISTYSVGFDHIDIPEATKRGIYVTHTPGVLTDAVAEFTVGLILAVTRRIVEAD 125

Query: 65  NCIASG 70
             I +G
Sbjct: 126 KIIRTG 131

Thermofilum pendens (strain Hrk 5) (taxid: 368408)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 6

>sp|P36234|DHGY_HYPME Glycerate dehydrogenase OS=Hyphomicrobium methylovorum PE=1 SV=2

 Score = 52.8 bits (125), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           R  EN+K IST+S+G DH+ LD  K+RGI+VG      + A AE  + L +  +RR  +G
Sbjct: 65  RIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEG 124

Query: 64  HNCIASGTEKSQQHAITELITQSDTNHT 91
              I + +    +    EL+ +   N T
Sbjct: 125 EKMIRTRSWPGWEP--LELVGEKLDNKT 150

Active on hydroxypyruvate and glyoxylate.

Hyphomicrobium methylovorum (taxid: 84)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: 2

EC: 9

>sp|Q2FVW4|Y2577_STAA8 Putative 2-hydroxyacid dehydrogenase SAOUHSC_02577 OS=Staphylococcus aureus (strain NCTC 8325) GN=SAOUHSC_02577 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain NCTC 8325) (taxid: 93061)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6GEC9|Y2389_STAAR Putative 2-hydroxyacid dehydrogenase SAR2389 OS=Staphylococcus aureus (strain MRSA252) GN=SAR2389 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain MRSA252) (taxid: 282458)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q5HDQ4|Y2296_STAAC Putative 2-hydroxyacid dehydrogenase SACOL2296 OS=Staphylococcus aureus (strain COL) GN=SACOL2296 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain COL) (taxid: 93062)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q2FEI9|Y2254_STAA3 Putative 2-hydroxyacid dehydrogenase SAUSA300_2254 OS=Staphylococcus aureus (strain USA300) GN=SAUSA300_2254 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain USA300) (taxid: 367830)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q8NV80|Y2224_STAAW Putative 2-hydroxyacid dehydrogenase MW2224 OS=Staphylococcus aureus (strain MW2) GN=MW2224 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain MW2) (taxid: 196620)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

>sp|Q6G716|Y2196_STAAS Putative 2-hydroxyacid dehydrogenase SAS2196 OS=Staphylococcus aureus (strain MSSA476) GN=SAS2196 PE=3 SV=1

 Score = 45.1 bits (105), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 19/59 (32%), Positives = 37/59 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG++LK+I+ +  G +++ ++  + + I V      S++A A+  IGL +AV+RR  +G
Sbjct: 63  AGKDLKIIANYGAGFNNIDIEYAREKSIDVTNTPKASTNATADLTIGLVLAVARRIVEG 121

Staphylococcus aureus (strain MSSA476) (taxid: 282459)

EC: 1

EC: .

EC: 1

EC: .

EC: 1

EC: .

EC: -

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
317575680	327	glyoxylate reductase/hydroxypyruvate red	0.660	0.220	0.513	3e-12
47215537	319	unnamed protein product [Tetraodon nigro	0.660	0.225	0.5	5e-12
392881520	355	glyoxylate reductase/hydroxypyruvate red	0.541	0.166	0.610	6e-12
392883490	355	glyoxylate reductase/hydroxypyruvate red	0.541	0.166	0.610	6e-12
387914882	355	glyoxylate reductase/hydroxypyruvate red	0.541	0.166	0.610	6e-12
66472696	327	glyoxylate reductase/hydroxypyruvate red	0.605	0.201	0.530	8e-12
33468556	327	novel protein similar to human glyoxylat	0.605	0.201	0.530	8e-12
392876574	355	glyoxylate reductase/hydroxypyruvate red	0.541	0.166	0.610	1e-11
225706132	328	Glyoxylate reductase/hydroxypyruvate red	0.605	0.201	0.530	2e-11
348514536	328	PREDICTED: glyoxylate reductase/hydroxyp	0.605	0.201	0.530	6e-11

>gi|317575680|ref|NP_001187384.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus] gi|308322871|gb|ADO28573.1| glyoxylate reductase/hydroxypyruvate reductase [Ictalurus punctatus]

 Score = 75.9 bits (185), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 37/72 (51%), Positives = 46/72 (63%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL +D+IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct: 71  AGPNLKVISTMSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGI 130

Query: 65  NCIASGTEKSQQ 76
             + SG   S +
Sbjct: 131 QEVKSGGWSSWK 142

Source: Ictalurus punctatus

Species: Ictalurus punctatus

Genus: Ictalurus

Family: Ictaluridae

Order: Siluriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|47215537|emb|CAG06267.1| unnamed protein product [Tetraodon nigroviridis]

 Score = 75.1 bits (183), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 36/72 (50%), Positives = 47/72 (65%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG+DHL L++IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct: 65  AGPNLKVISTLSVGYDHLVLEEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGI 124

Query: 65  NCIASGTEKSQQ 76
             + +G   S +
Sbjct: 125 EEVKNGGWSSWK 136

Source: Tetraodon nigroviridis

Species: Tetraodon nigroviridis

Genus: Tetraodon

Family: Tetraodontidae

Order: Tetraodontiformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392881520|gb|AFM89592.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 41/59 (69%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG NLKVIST SVGHDHL LD+IK RGIRVG    V +DA AE  + L +A SRR  + 
Sbjct: 98  AGPNLKVISTMSVGHDHLSLDEIKKRGIRVGYTPDVLTDATAELTVALLLATSRRLMEA 156

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392883490|gb|AFM90577.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 41/59 (69%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG NLKVIST SVGHDHL LD+IK RGIRVG    V +DA AE  + L +A SRR  + 
Sbjct: 98  AGPNLKVISTMSVGHDHLSLDEIKKRGIRVGYTPDVLTDATAELTVALLLATSRRLMEA 156

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|387914882|gb|AFK11050.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii] gi|392876936|gb|AFM87300.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii] gi|392877568|gb|AFM87616.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii] gi|392877738|gb|AFM87701.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii] gi|392882350|gb|AFM90007.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii]

 Score = 74.7 bits (182), Expect = 6e-12,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 41/59 (69%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG NLKVIST SVGHDHL LD+IK RGIRVG    V +DA AE  + L +A SRR  + 
Sbjct: 98  AGPNLKVISTMSVGHDHLSLDEIKKRGIRVGYTPDVLTDATAELTVALLLATSRRLMEA 156

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|66472696|ref|NP_001018361.1| glyoxylate reductase/hydroxypyruvate reductase [Danio rerio] gi|63100524|gb|AAH95040.1| Glyoxylate reductase/hydroxypyruvate reductase [Danio rerio]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL +D+IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct: 71  AGPNLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGV 130

Query: 65  NCIASG 70
             + +G
Sbjct: 131 EEVKNG 136

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|33468556|emb|CAE30406.1| novel protein similar to human glyoxylate reductase/hydroxypyruvate reductase (GRHPR) [Danio rerio]

 Score = 74.3 bits (181), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL +D+IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct: 71  AGPNLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGV 130

Query: 65  NCIASG 70
             + +G
Sbjct: 131 EEVKNG 136

Source: Danio rerio

Species: Danio rerio

Genus: Danio

Family: Cyprinidae

Order: Cypriniformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|392876574|gb|AFM87119.1| glyoxylate reductase/hydroxypyruvate reductase [Callorhinchus milii]

 Score = 73.6 bits (179), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 36/59 (61%), Positives = 40/59 (67%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           AG NLKVIST SVGHDHL LD IK RGIRVG    V +DA AE  + L +A SRR  + 
Sbjct: 98  AGPNLKVISTMSVGHDHLSLDAIKKRGIRVGYTPDVLTDATAELTVALLLATSRRLMEA 156

Source: Callorhinchus milii

Species: Callorhinchus milii

Genus: Callorhinchus

Family: Callorhinchidae

Order: Chimaeriformes

Class: Chondrichthyes

Phylum: Chordata

Superkingdom: Eukaryota

>gi|225706132|gb|ACO08912.1| Glyoxylate reductase/hydroxypyruvate reductase [Osmerus mordax]

 Score = 73.2 bits (178), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL LD++K RG+RVG    V +DA AE  + L +A +RR  +G 
Sbjct: 72  AGPNLKVISTMSVGFDHLSLDEVKKRGVRVGYTPDVLTDATAELTVALLLATARRLPEGV 131

Query: 65  NCIASG 70
             + SG
Sbjct: 132 EEVKSG 137

Source: Osmerus mordax

Species: Osmerus mordax

Genus: Osmerus

Family: Osmeridae

Order: Osmeriformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

>gi|348514536|ref|XP_003444796.1| PREDICTED: glyoxylate reductase/hydroxypyruvate reductase-like [Oreochromis niloticus]

 Score = 71.6 bits (174), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL +D+IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct: 72  AGPNLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGV 131

Query: 65  NCIASG 70
             + +G
Sbjct: 132 EEVKNG 137

Source: Oreochromis niloticus

Species: Oreochromis niloticus

Genus: Oreochromis

Family: Cichlidae

Order: Perciformes

Class: Actinopterygii

Phylum: Chordata

Superkingdom: Eukaryota

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Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	109
ZFIN|ZDB-GENE-040724-230	327	grhpra "glyoxylate reductase/h	0.605	0.201	0.530	3.5e-12
UNIPROTKB|F1NX57	345	GRHPR "Uncharacterized protein	0.605	0.191	0.515	4e-11
UNIPROTKB|F1MB84	328	GRHPR "Uncharacterized protein	0.605	0.201	0.515	1.6e-10
UNIPROTKB|Q9UBQ7	328	GRHPR "Glyoxylate reductase/hy	0.605	0.201	0.5	3.5e-10
MGI|MGI:1923488	328	Grhpr "glyoxylate reductase/hy	0.605	0.201	0.5	3.5e-10
UNIPROTKB|Q5T946	395	GRHPR "Glyoxylate reductase/hy	0.605	0.167	0.5	5.4e-10
UNIPROTKB|F1PJS0	328	GRHPR "Uncharacterized protein	0.605	0.201	0.5	5.8e-10
RGD|1308851	328	Grhpr "glyoxylate reductase/hy	0.532	0.176	0.551	5.8e-10
UNIPROTKB|E9PSJ6	335	Grhpr "Protein Grhpr" [Rattus	0.532	0.173	0.551	6.1e-10
UNIPROTKB|D4A6S1	336	Grhpr "Protein Grhpr" [Rattus	0.532	0.172	0.551	6.2e-10

ZFIN|ZDB-GENE-040724-230 grhpra "glyoxylate reductase/hydroxypyruvate reductase a" [Danio rerio (taxid:7955)]

 Score = 168 (64.2 bits), Expect = 3.5e-12, P = 3.5e-12
 Identities = 35/66 (53%), Positives = 44/66 (66%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NLKVIST SVG DHL +D+IK RGIRVG    V +DA AE  + L +A +RR  +G 
Sbjct:    71 AGPNLKVISTLSVGFDHLAIDEIKKRGIRVGYTPDVLTDATAELTVALLLATARRLPEGV 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVKNG 136

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

GO:0008152 "metabolic process" evidence=IEA

GO:0000166 "nucleotide binding" evidence=IEA

GO:0055114 "oxidation-reduction process" evidence=IEA

GO:0048037 "cofactor binding" evidence=IEA

UNIPROTKB|F1NX57 GRHPR "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 159 (61.0 bits), Expect = 4.0e-11, P = 4.0e-11
 Identities = 34/66 (51%), Positives = 44/66 (66%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG +LKVIST SVG DHL LD+IK RGIRVG    V +DA AE ++ L +A  RR  +  
Sbjct:    88 AGPSLKVISTMSVGFDHLALDEIKKRGIRVGYTPDVLTDATAELSVALLLATCRRLPEAV 147

Query:    65 NCIASG 70
             + + +G
Sbjct:   148 SEVKTG 153

GO:0051287 "NAD binding" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0070402 "NADPH binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

UNIPROTKB|F1MB84 GRHPR "Uncharacterized protein" [Bos taurus (taxid:9913)]

 Score = 153 (58.9 bits), Expect = 1.6e-10, P = 1.6e-10
 Identities = 34/66 (51%), Positives = 41/66 (62%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NLKVIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +  
Sbjct:    71 AGANLKVISTMSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAI 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVKNG 136

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|Q9UBQ7 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 33/66 (50%), Positives = 40/66 (60%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NLKVIST SVG DHL LD+IK RGIRVG    V +D  AE  + L +   RR  +  
Sbjct:    71 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVKNG 136

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IDA;NAS

GO:0008152 "metabolic process" evidence=NAS

GO:0007588 "excretion" evidence=IMP

GO:0016618 "hydroxypyruvate reductase activity" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=IDA

GO:0051287 "NAD binding" evidence=TAS

GO:0008465 "glycerate dehydrogenase activity" evidence=IDA

GO:0051259 "protein oligomerization" evidence=IDA

GO:0042803 "protein homodimerization activity" evidence=IDA

GO:0070402 "NADPH binding" evidence=IDA

GO:0005782 "peroxisomal matrix" evidence=TAS

GO:0034641 "cellular nitrogen compound metabolic process" evidence=TAS

GO:0044281 "small molecule metabolic process" evidence=TAS

GO:0046487 "glyoxylate metabolic process" evidence=TAS

GO:0005737 "cytoplasm" evidence=IDA

MGI|MGI:1923488 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Mus musculus (taxid:10090)]

 Score = 150 (57.9 bits), Expect = 3.5e-10, P = 3.5e-10
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NL+VIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +  
Sbjct:    71 AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPEAI 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVKNG 136

GO:0000166 "nucleotide binding" evidence=IEA

GO:0005829 "cytosol" evidence=ISO

GO:0007588 "excretion" evidence=ISO

GO:0008152 "metabolic process" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=ISO

GO:0016491 "oxidoreductase activity" evidence=IEA

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISO

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISO

GO:0031406 "carboxylic acid binding" evidence=ISO

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=ISO

GO:0048037 "cofactor binding" evidence=IEA

GO:0050661 "NADP binding" evidence=ISO

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051287 "NAD binding" evidence=ISO

GO:0055114 "oxidation-reduction process" evidence=IEA;ISO

GO:0070402 "NADPH binding" evidence=ISO

UNIPROTKB|Q5T946 GRHPR "Glyoxylate reductase/hydroxypyruvate reductase" [Homo sapiens (taxid:9606)]

 Score = 150 (57.9 bits), Expect = 5.4e-10, P = 5.4e-10
 Identities = 33/66 (50%), Positives = 40/66 (60%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NLKVIST SVG DHL LD+IK RGIRVG    V +D  AE  + L +   RR  +  
Sbjct:    71 AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVKNG 136

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|F1PJS0 GRHPR "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 148 (57.2 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 33/66 (50%), Positives = 41/66 (62%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             AG NLKVIST SVG DHL L++IK RGIRVG    V +DA AE  + L +   RR  +  
Sbjct:    71 AGANLKVISTMSVGVDHLALEEIKKRGIRVGYTPDVLTDATAELAMSLLLTTCRRLPEAI 130

Query:    65 NCIASG 70
               + +G
Sbjct:   131 EEVRNG 136

GO:0070402 "NADPH binding" evidence=IEA

GO:0051259 "protein oligomerization" evidence=IEA

GO:0042803 "protein homodimerization activity" evidence=IEA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=IEA

GO:0016618 "hydroxypyruvate reductase activity" evidence=IEA

GO:0008465 "glycerate dehydrogenase activity" evidence=IEA

GO:0007588 "excretion" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

RGD|1308851 Grhpr "glyoxylate reductase/hydroxypyruvate reductase" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 5.8e-10, P = 5.8e-10
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
             AG NL+VIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +
Sbjct:    71 AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPE 128

GO:0005737 "cytoplasm" evidence=ISO

GO:0005829 "cytosol" evidence=IDA

GO:0007588 "excretion" evidence=ISO

GO:0008465 "glycerate dehydrogenase activity" evidence=ISO;IDA

GO:0016618 "hydroxypyruvate reductase activity" evidence=ISO;IDA

GO:0030267 "glyoxylate reductase (NADP) activity" evidence=ISO;IDA

GO:0031406 "carboxylic acid binding" evidence=IPI

GO:0042803 "protein homodimerization activity" evidence=ISO

GO:0043648 "dicarboxylic acid metabolic process" evidence=IDA

GO:0050661 "NADP binding" evidence=IDA

GO:0051259 "protein oligomerization" evidence=ISO

GO:0051287 "NAD binding" evidence=IDA

GO:0055114 "oxidation-reduction process" evidence=ISO

GO:0070402 "NADPH binding" evidence=ISO

UNIPROTKB|E9PSJ6 Grhpr "Protein Grhpr" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 6.1e-10, P = 6.1e-10
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
             AG NL+VIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +
Sbjct:    78 AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPE 135

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

UNIPROTKB|D4A6S1 Grhpr "Protein Grhpr" [Rattus norvegicus (taxid:10116)]

 Score = 148 (57.2 bits), Expect = 6.2e-10, P = 6.2e-10
 Identities = 32/58 (55%), Positives = 38/58 (65%)

Query:     5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
             AG NL+VIST SVG DHL LD+IK RGIRVG    V +DA AE  + L +   RR  +
Sbjct:    78 AGANLRVISTLSVGVDHLALDEIKKRGIRVGYTPGVLTDATAELAVSLLLTTCRRLPE 135

GO:0016616 "oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor" evidence=IEA

GO:0051287 "NAD binding" evidence=IEA

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Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

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Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	109
cd05301	309	cd05301, GDH, D-glycerate dehydrogenase/hydroxypyr	3e-17
pfam00389	312	pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxy	6e-16
COG1052	324	COG1052, LdhA, Lactate dehydrogenase and related d	1e-15
cd12156	301	cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase,	2e-14
cd05198	302	cd05198, formate_dh_like, Formate/glycerate and re	3e-13
cd12172	306	cd12172, PGDH_like_2, Putative D-3-Phosphoglycerat	7e-12
COG0111	324	COG0111, SerA, Phosphoglycerate dehydrogenase and	2e-11
cd12161	315	cd12161, GDH_like_1, Putative glycerate dehydrogen	4e-11
cd12178	317	cd12178, 2-Hacid_dh_13, Putative D-isomer specific	3e-10
cd12175	311	cd12175, 2-Hacid_dh_11, Putative D-isomer specific	4e-10
cd05303	301	cd05303, PGDH_2, Phosphoglycerate dehydrogenase (P	7e-10
cd01619	323	cd01619, LDH_like, D-Lactate and related Dehydroge	7e-10
cd12187	329	cd12187, LDH_like_1, D-Lactate and related Dehydro	6e-09
cd12165	314	cd12165, 2-Hacid_dh_6, Putative D-isomer specific	9e-08
cd12173	304	cd12173, PGDH_4, Phosphoglycerate dehydrogenases,	1e-07
cd12157	318	cd12157, PTDH, Thermostable Phosphite Dehydrogenas	7e-07
cd12168	321	cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-l	2e-06
cd12169	308	cd12169, PGDH_like_1, Putative D-3-Phosphoglycerat	2e-06
cd05299	312	cd05299, CtBP_dh, C-terminal binding protein (CtBP	3e-06
PRK13243	333	PRK13243, PRK13243, glyoxylate reductase; Reviewed	3e-06
cd12185	322	cd12185, HGDH_LDH_like, Putative Lactate dehydroge	4e-06
cd12177	321	cd12177, 2-Hacid_dh_12, Putative D-isomer specific	2e-05
cd12171	310	cd12171, 2-Hacid_dh_10, Putative D-isomer specific	2e-05
cd12183	328	cd12183, LDH_like_2, D-Lactate and related Dehydro	4e-05
cd12186	329	cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydr	6e-05
PRK07574	385	PRK07574, PRK07574, formate dehydrogenase; Provisi	7e-05
cd12155	314	cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2	3e-04
cd12184	330	cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydro	3e-04
cd12162	307	cd12162, 2-Hacid_dh_4, Putative D-isomer specific	4e-04
cd12174	305	cd12174, PGDH_like_3, Putative D-3-Phosphoglycerat	5e-04
cd05302	348	cd05302, FDH, NAD-dependent Formate Dehydrogenase	0.002
TIGR01327	525	TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenas	0.003
cd05300	313	cd05300, 2-Hacid_dh_1, Putative D-isomer specific	0.003

>gnl|CDD|240626 cd05301, GDH, D-glycerate dehydrogenase/hydroxypyruvate reductase (GDH)

 Score = 74.4 bits (184), Expect = 3e-17
 Identities = 27/67 (40%), Positives = 40/67 (59%), Gaps = 2/67 (2%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           A   LKVI+ +SVG+DH+ +D  K+RGI V  T   V +DA A+    L +A +RR  +G
Sbjct: 62  AAPPLKVIANYSVGYDHIDVDAAKARGIPVTNTPD-VLTDATADLAFALLLAAARRVVEG 120

Query: 64  HNCIASG 70
              + +G
Sbjct: 121 DRFVRAG 127

D-glycerate dehydrogenase (GDH, also known as hydroxypyruvate reductase, HPR) catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. In humans, HPR deficiency causes primary hyperoxaluria type 2, characterized by over-excretion of L-glycerate and oxalate in the urine, possibly due to an imbalance in competition with L-lactate dehydrogenase, another formate dehydrogenase (FDH)-like enzyme. GDH, like FDH and other members of the D-specific hydroxyacid dehydrogenase family that also includes L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase, typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form, despite often low sequence identity. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 309

>gnl|CDD|215893 pfam00389, 2-Hacid_dh, D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain

 Score = 70.8 bits (174), Expect = 6e-16
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   LKVI+   VG D++ LD    RGI V  V   S+++VAE  +GL +A++RR  +  
Sbjct: 57  AAPGLKVIARRGVGVDNIDLDAATERGILVTNVPGYSTESVAELTVGLILALARRIPEAD 116

Query: 65  NCIASG 70
             + +G
Sbjct: 117 ASVRAG 122

This family represents the largest portion of the catalytic domain of 2-hydroxyacid dehydrogenases as the NAD binding domain is inserted within the structural domain. Length = 312

>gnl|CDD|223980 COG1052, LdhA, Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 25/67 (37%), Positives = 39/67 (58%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
                LK+I+T S G+D++ L+  K RGI V  V   S++AVAE  + L +A++RR  +G
Sbjct: 62  EKLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEG 121

Query: 64  HNCIASG 70
              +  G
Sbjct: 122 DRRVREG 128

Length = 324

>gnl|CDD|240633 cd12156, HPPR, Hydroxy(phenyl)pyruvate Reductase, D-isomer-specific 2-hydroxyacid-related dehydrogenase

 Score = 66.3 bits (163), Expect = 2e-14
 Identities = 24/63 (38%), Positives = 38/63 (60%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
            L++I++F VG+D + LD  ++RGIRV     V +D VA+  +GL +AV RR       +
Sbjct: 64  ALELIASFGVGYDGIDLDAARARGIRVTNTPGVLTDDVADLAVGLLLAVLRRIPAADRFV 123

Query: 68  ASG 70
            +G
Sbjct: 124 RAG 126

Hydroxy(phenyl)pyruvate reductase (HPPR) catalyzes the NADP-dependent reduction of hydroxyphenylpyruvates, hydroxypyruvate, or pyruvate to its respective lactate. HPPR acts as a dimer and is related to D-isomer-specific 2-hydroxyacid dehydrogenases, a superfamily that includes groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 301

>gnl|CDD|240622 cd05198, formate_dh_like, Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family

 Score = 63.4 bits (155), Expect = 3e-13
 Identities = 23/67 (34%), Positives = 33/67 (49%)

Query: 7   ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 66
             LK I     G D++ LD  K RGI V  V   +++AVAE  +GL +A+ RR  +    
Sbjct: 62  PKLKFIQVAGAGVDNIDLDAAKKRGITVTNVPGANAEAVAEHALGLLLALLRRLPRADAA 121

Query: 67  IASGTEK 73
           +  G   
Sbjct: 122 VRRGWGW 128

Formate dehydrogenase, D-specific 2-hydroxy acid dehydrogenase, Phosphoglycerate Dehydrogenase, Lactate dehydrogenase, Thermostable Phosphite Dehydrogenase, and Hydroxy(phenyl)pyruvate reductase, among others, share a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. 2-hydroxyacid dehydrogenases are enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase, among others. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 302

>gnl|CDD|240649 cd12172, PGDH_like_2, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 59.4 bits (145), Expect = 7e-12
 Identities = 26/67 (38%), Positives = 40/67 (59%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A   LKVIS + VG+D++ L+  K RGI V      +S++VAE  IGL +A++R+  Q 
Sbjct: 64  AAAPRLKVISRYGVGYDNIDLEAAKKRGIVVTNTPGANSNSVAELTIGLMLALARQIPQA 123

Query: 64  HNCIASG 70
              + +G
Sbjct: 124 DREVRAG 130

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 306

>gnl|CDD|223189 COG0111, SerA, Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

 Score = 58.5 bits (142), Expect = 2e-11
 Identities = 23/79 (29%), Positives = 34/79 (43%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A  NLK I     G D++ L+    RGI V      ++ +VAE  + L +A++RR    
Sbjct: 62  AAAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDA 121

Query: 64  HNCIASGTEKSQQHAITEL 82
                 G    +    TEL
Sbjct: 122 DASQRRGEWDRKAFRGTEL 140

Length = 324

>gnl|CDD|240638 cd12161, GDH_like_1, Putative glycerate dehydrogenase and related proteins of the D-specific 2-hydroxy dehydrogenase family

 Score = 57.6 bits (140), Expect = 4e-11
 Identities = 29/69 (42%), Positives = 36/69 (52%), Gaps = 1/69 (1%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A +NLK+IS    G DH+ L+  K RGI V      S++AVAE  IGLAI + R     
Sbjct: 65  EACKNLKMISVAFTGVDHVDLEACKERGITVSNAAGYSTEAVAELTIGLAIDLLRNIVPC 124

Query: 64  -HNCIASGT 71
                A GT
Sbjct: 125 DAAVRAGGT 133

This group contains a variety of proteins variously identified as glycerate dehydrogenase (GDH, aka Hydroxypyruvate Reductase) and other enzymes of the 2-hydroxyacid dehydrogenase family. GDH catalyzes the reversible reaction of (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 315

>gnl|CDD|240655 cd12178, 2-Hacid_dh_13, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 54.9 bits (133), Expect = 3e-10
 Identities = 21/55 (38%), Positives = 34/55 (61%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
           A +NLK+I+ +  G D++ +D  K +GI V     VS++  AE   GL +A++RR
Sbjct: 62  AAKNLKIIANYGAGFDNIDVDYAKEKGIPVTNTPAVSTEPTAELTFGLILALARR 116

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 317

>gnl|CDD|240652 cd12175, 2-Hacid_dh_11, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 54.5 bits (132), Expect = 4e-10
 Identities = 19/67 (28%), Positives = 35/67 (52%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A   L++I    VG D + L+   +RGI V  +   ++++VAE  + L +A+ RR  + 
Sbjct: 61  AAAPRLRLIQQPGVGLDGVDLEAATARGIPVANIPGGNAESVAEHAVMLMLALLRRLPEA 120

Query: 64  HNCIASG 70
              + +G
Sbjct: 121 DRELRAG 127

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 311

>gnl|CDD|240628 cd05303, PGDH_2, Phosphoglycerate dehydrogenase (PGDH) NAD-binding and catalytic domains

 Score = 54.1 bits (131), Expect = 7e-10
 Identities = 21/61 (34%), Positives = 38/61 (62%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A +NLK+I+   VG D++ ++  K +GI+V      SS++VAE  IGL ++++R   + +
Sbjct: 60  AAKNLKIIARAGVGLDNIDVEYAKKKGIKVINTPGASSNSVAELVIGLMLSLARFIHRAN 119

Query: 65  N 65
            
Sbjct: 120 R 120

Phosphoglycerate dehydrogenase (PGDH) catalyzes the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDH comes in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 301

>gnl|CDD|240620 cd01619, LDH_like, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 53.8 bits (130), Expect = 7e-10
 Identities = 22/52 (42%), Positives = 29/52 (55%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
            LK IS  + G+D++ LD  K  GI V  V   S +AVAE  I L +A+ R 
Sbjct: 67  GLKFISLRATGYDNIDLDYAKELGIGVTNVPEYSPNAVAEHTIALILALLRN 118

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. D-HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. Similar to the structurally distinct L-HicDH, D-HicDH exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. (R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 323

>gnl|CDD|240663 cd12187, LDH_like_1, D-Lactate and related Dehydrogenase like proteins, NAD-binding and catalytic domains

 Score = 51.1 bits (123), Expect = 6e-09
 Identities = 21/57 (36%), Positives = 31/57 (54%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
            LK+I+T S G DH+ L+  + RGI V  V       VAE    L +A+SR+ ++  
Sbjct: 63  RLKLIATRSTGFDHIDLEACRERGIAVCNVPDYGEATVAEHAFALLLALSRKLREAI 119

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-Hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|240642 cd12165, 2-Hacid_dh_6, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 48.0 bits (115), Expect = 9e-08
 Identities = 22/62 (35%), Positives = 35/62 (56%), Gaps = 4/62 (6%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           A + LK+I   S G DHL L+++   G+ V    G  +S AVAE  + L +A+++R  + 
Sbjct: 57  ALKRLKLIQVPSAGVDHLPLERLPE-GVVVANNHG--NSPAVAEHALALILALAKRIVEY 113

Query: 64  HN 65
            N
Sbjct: 114 DN 115

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240650 cd12173, PGDH_4, Phosphoglycerate dehydrogenases, NAD-binding and catalytic domains

 Score = 47.4 bits (114), Expect = 1e-07
 Identities = 24/80 (30%), Positives = 39/80 (48%), Gaps = 2/80 (2%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVS-SDAVAEFNIGLAIAVSRRFQQ 62
            A   LKVI    VG D++ ++   +RGI V    P + + +VAE  I L +A++R   Q
Sbjct: 58  EAAPRLKVIGRAGVGVDNIDVEAATARGILV-VNAPGANTISVAEHTIALMLALARNIPQ 116

Query: 63  GHNCIASGTEKSQQHAITEL 82
               + +G    ++    EL
Sbjct: 117 ADASLRAGKWDRKKFMGVEL 136

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases. PGDH in E. coli and Mycobacterium tuberculosis form tetramers, with subunits containing a Rossmann-fold NAD binding domain. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Length = 304

>gnl|CDD|240634 cd12157, PTDH, Thermostable Phosphite Dehydrogenase

 Score = 45.4 bits (108), Expect = 7e-07
 Identities = 21/71 (29%), Positives = 33/71 (46%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A   LK+I+    G+D+  ++   +RGI V  V  + ++  AE  IGL I + R    G
Sbjct: 62  DACPRLKIIACALKGYDNFDVEACTARGIWVTIVPDLLTEPTAELTIGLLIGLGRHILAG 121

Query: 64  HNCIASGTEKS 74
              + SG    
Sbjct: 122 DRFVRSGKFGG 132

Phosphite dehydrogenase (PTDH), a member of the D-specific 2-hydroxyacid dehydrogenase family, catalyzes the NAD-dependent formation of phosphate from phosphite (hydrogen phosphonate). PTDH has been suggested as a potential enzyme for cofactor regeneration systems. The D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD-binding domain. Length = 318

>gnl|CDD|240645 cd12168, Mand_dh_like, D-Mandelate Dehydrogenase-like dehydrogenases

 Score = 44.1 bits (105), Expect = 2e-06
 Identities = 15/58 (25%), Positives = 28/58 (48%)

Query: 7   ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
            +LK+I+    G+D + +D +  RGI+V        +A A+  + L +   R F +  
Sbjct: 75  PSLKIIAHAGAGYDQIDVDALTKRGIQVSNTPGAVDEATADTALFLILGALRNFSRAE 132

D-Mandelate dehydrogenase (D-ManDH), identified as an enzyme that interconverts benzoylformate and D-mandelate, is a D-2-hydroxyacid dehydrogenase family member that catalyzes the conversion of c3-branched 2-ketoacids. D-ManDH exhibits broad substrate specificities for 2-ketoacids with large hydrophobic side chains, particularly those with C3-branched side chains. 2-hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Glycerate dehydrogenase catalyzes the reaction (R)-glycerate + NAD+ to hydroxypyruvate + NADH + H+. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 321

>gnl|CDD|240646 cd12169, PGDH_like_1, Putative D-3-Phosphoglycerate Dehydrogenases

 Score = 44.0 bits (105), Expect = 2e-06
 Identities = 19/56 (33%), Positives = 28/56 (50%), Gaps = 3/56 (5%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
           NLK++ T  + +  + L   K RGI V GT G     A AE    L +A++R   +
Sbjct: 69  NLKLLVTTGMRNASIDLAAAKERGIVVCGTGG--GPTATAELTWALILALARNLPE 122

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 308

>gnl|CDD|240624 cd05299, CtBP_dh, C-terminal binding protein (CtBP), D-isomer-specific 2-hydroxyacid dehydrogenases related repressor

 Score = 43.7 bits (104), Expect = 3e-06
 Identities = 18/65 (27%), Positives = 32/65 (49%)

Query: 7   ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNC 66
             LKVI  + VG D++ +     RGI V  V    ++ VA+  + L +A++R+       
Sbjct: 64  PRLKVIVRYGVGVDNVDVAAATERGIPVCNVPDYCTEEVADHALALILALARKLPFLDRA 123

Query: 67  IASGT 71
           + +G 
Sbjct: 124 VRAGG 128

The transcriptional corepressor CtBP is a dehydrogenase with sequence and structural similarity to the d2-hydroxyacid dehydrogenase family. CtBP was initially identified as a protein that bound the PXDLS sequence at the adenovirus E1A C terminus, causing the loss of CR-1-mediated transactivation. CtBP binds NAD(H) within a deep cleft, undergoes a conformational change upon NAD binding, and has NAD-dependent dehydrogenase activity. Length = 312

>gnl|CDD|183914 PRK13243, PRK13243, glyoxylate reductase; Reviewed

 Score = 43.6 bits (103), Expect = 3e-06
 Identities = 20/69 (28%), Positives = 40/69 (57%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   L++++ ++VG+D++ +++   RGI V     V ++A A+F   L +A +RR  +  
Sbjct: 64  AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEAD 123

Query: 65  NCIASGTEK 73
           + + SG  K
Sbjct: 124 HFVRSGEWK 132

Length = 333

>gnl|CDD|240661 cd12185, HGDH_LDH_like, Putative Lactate dehydrogenase and (R)-2-Hydroxyglutarate Dehydrogenase-like proteins, NAD-binding and catalytic domains

 Score = 43.4 bits (103), Expect = 4e-06
 Identities = 20/50 (40%), Positives = 31/50 (62%), Gaps = 1/50 (2%)

Query: 10  KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
           K IST S+G+DH+ LD  K  GI+V  V   S ++VA++ + L +   R+
Sbjct: 70  KYISTRSIGYDHIDLDAAKELGIKVSNV-TYSPNSVADYTVMLMLMALRK 118

This group contains various putative dehydrogenases related to D-lactate dehydrogenase (LDH), (R)-2-hydroxyglutarate dehydrogenase (HGDH), and related enzymes, members of the 2-hydroxyacid dehydrogenases family. LDH catalyzes the interconversion of pyruvate and lactate, and HGDH catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. Despite often low sequence identity within this 2-hydroxyacid dehydrogenase family, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 322

>gnl|CDD|240654 cd12177, 2-Hacid_dh_12, Putative D-isomer specific 2-hydroxyacid dehydrogenases, NAD-binding and catalytic domains

 Score = 41.5 bits (98), Expect = 2e-05
 Identities = 21/64 (32%), Positives = 32/64 (50%), Gaps = 1/64 (1%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVSSDAVAEFNIGLAIAVSRRFQQGHNC 66
            LK+I+   +G+D++ L      G+ V  V G V  DAVAE  + L + V R+  Q    
Sbjct: 69  GLKLIARHGIGYDNVDLKAATEHGVIVTRVPGAVERDAVAEHAVALILTVLRKINQASEA 128

Query: 67  IASG 70
           +  G
Sbjct: 129 VKEG 132

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 321

>gnl|CDD|240648 cd12171, 2-Hacid_dh_10, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 41.0 bits (97), Expect = 2e-05
 Identities = 20/67 (29%), Positives = 34/67 (50%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A   LK+I     G +++ ++    RGI V      +++AVAEF +GL +A +R   + 
Sbjct: 63  EAAPKLKLIGVCRGGPENVDVEAATERGIPVLNTPGRNAEAVAEFTVGLMLAETRNIARA 122

Query: 64  HNCIASG 70
           H  +  G
Sbjct: 123 HAALKDG 129

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 310

>gnl|CDD|240659 cd12183, LDH_like_2, D-Lactate and related Dehydrogenases, NAD-binding and catalytic domains

 Score = 40.5 bits (96), Expect = 4e-05
 Identities = 18/56 (32%), Positives = 30/56 (53%)

Query: 10  KVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 65
           K+I+    G +++ L   K  GI V  V   S  AVAE  + L +A++R+  + +N
Sbjct: 70  KLIALRCAGFNNVDLKAAKELGITVVRVPAYSPYAVAEHAVALLLALNRKIHRAYN 125

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenase family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase (D-HicDH) and shares the 2-domain structure of formate dehydrogenase. D-2-hydroxyisocaproate dehydrogenase-like (HicDH) proteins are NAD-dependent members of the hydroxycarboxylate dehydrogenase family, and share the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 328

>gnl|CDD|240662 cd12186, LDH, D-Lactate dehydrogenase and D-2-Hydroxyisocaproic acid dehydrogenase (D-HicDH), NAD-binding and catalytic domains

 Score = 39.8 bits (94), Expect = 6e-05
 Identities = 17/53 (32%), Positives = 27/53 (50%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
            +K I+  S G D + LD  K  G+++  V   S  A+AEF +  A+ + R  
Sbjct: 68  GIKQIALRSAGVDMIDLDLAKENGLKITNVPAYSPRAIAEFAVTQALNLLRNT 120

D-Lactate dehydrogenase (LDH) catalyzes the interconversion of pyruvate and lactate, and is a member of the 2-hydroxyacid dehydrogenases family. LDH is homologous to D-2-hydroxyisocaproic acid dehydrogenase(D-HicDH) and shares the 2 domain structure of formate dehydrogenase. D-HicDH is a NAD-dependent member of the hydroxycarboxylate dehydrogenase family, and shares the Rossmann fold typical of many NAD binding proteins. HicDH from Lactobacillus casei forms a monomer and catalyzes the reaction R-CO-COO(-) + NADH + H+ to R-COH-COO(-) + NAD+. D-HicDH, like the structurally distinct L-HicDH, exhibits low side-chain R specificity, accepting a wide range of 2-oxocarboxylic acid side chains. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 329

>gnl|CDD|181041 PRK07574, PRK07574, formate dehydrogenase; Provisional

 Score = 39.7 bits (93), Expect = 7e-05
 Identities = 20/63 (31%), Positives = 31/63 (49%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
           NLK+  T  +G DH+ L      GI V  V   +S +VAE  + + +A+ R ++  H   
Sbjct: 114 NLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQA 173

Query: 68  ASG 70
             G
Sbjct: 174 VEG 176

Length = 385

>gnl|CDD|240632 cd12155, PGDH_1, Phosphoglycerate Dehydrogenase, 2-hydroxyacid dehydrogenase family

 Score = 37.9 bits (89), Expect = 3e-04
 Identities = 17/55 (30%), Positives = 31/55 (56%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
           NLK I  +S G D+L L+ IK +GI +     + S  +AE+ +G  + + +  ++
Sbjct: 60  NLKWIQLYSAGVDYLPLEYIKKKGILLTNNSGIHSIPIAEWIVGYILEIYKGLKK 114

Phosphoglycerate Dehydrogenase (PGDH) catalyzes the NAD-dependent conversion of 3-phosphoglycerate into 3-phosphohydroxypyruvate, which is the first step in serine biosynthesis. Over-expression of PGDH has been implicated as supporting proliferation of certain breast cancers, while PGDH deficiency is linked to defects in mammalian central nervous system development. PGDH is a member of the 2-hydroxyacid dehydrogenase family, enzymes that catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-Adenosylhomocysteine Hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann-fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 314

>gnl|CDD|240660 cd12184, HGDH_like, (R)-2-Hydroxyglutarate Dehydrogenase and related dehydrogenases, NAD-binding and catalytic domains

 Score = 38.0 bits (89), Expect = 3e-04
 Identities = 17/54 (31%), Positives = 29/54 (53%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQ 61
            +K + T +VG +H+ L+  K  G ++  V   S +A+AE    LA+ +SR   
Sbjct: 68  GIKYVFTRTVGFNHIDLEAAKELGFKMARVPSYSPNAIAELAFTLAMTLSRHTA 121

(R)-2-hydroxyglutarate dehydrogenase (HGDH) catalyzes the NAD-dependent reduction of 2-oxoglutarate to (R)-2-hydroxyglutarate. HGDH is a member of the D-2-hydroxyacid NAD(+)-dependent dehydrogenase family; these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Length = 330

>gnl|CDD|240639 cd12162, 2-Hacid_dh_4, Putative D-isomer specific 2-hydroxyacid dehydrogenases

 Score = 37.8 bits (89), Expect = 4e-04
 Identities = 25/81 (30%), Positives = 43/81 (53%), Gaps = 6/81 (7%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
           NLK+I   + G++++ L   K RGI V  V   S+D+VA+    L +A++R     ++ +
Sbjct: 65  NLKLIGVLATGYNNVDLAAAKERGITVTNVPGYSTDSVAQHTFALLLALARLVAYHNDVV 124

Query: 68  ASGT-EKSQQ-----HAITEL 82
            +G  +KS       + I EL
Sbjct: 125 KAGEWQKSPDFCFWDYPIIEL 145

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine yydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Length = 307

>gnl|CDD|240651 cd12174, PGDH_like_3, Putative D-3-Phosphoglycerate Dehydrogenases, NAD-binding and catalytic domains

 Score = 37.2 bits (87), Expect = 5e-04
 Identities = 21/67 (31%), Positives = 35/67 (52%), Gaps = 2/67 (2%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRV-GTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
              +LK I+    G +++ +D    RGI V  T G  +++AVAE  I + +A+SR   Q 
Sbjct: 47  FAPSLKAIARAGAGVNNIDVDAASKRGIVVFNTPGA-NANAVAELVIAMMLALSRNIIQA 105

Query: 64  HNCIASG 70
              + +G
Sbjct: 106 IKWVTNG 112

Phosphoglycerate dehydrogenases (PGDHs) catalyze the initial step in the biosynthesis of L-serine from D-3-phosphoglycerate. PGDHs come in 3 distinct structural forms, with this first group being related to 2-hydroxy acid dehydrogenases, sharing structural similarity to formate and glycerate dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily, which also include groups such as L-alanine dehydrogenase and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. Many, not all, members of this family are dimeric. Length = 305

>gnl|CDD|240627 cd05302, FDH, NAD-dependent Formate Dehydrogenase (FDH)

 Score = 35.8 bits (83), Expect = 0.002
 Identities = 20/63 (31%), Positives = 30/63 (47%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
           NLK+  T  +G DH+ L     RGI V  V   +  +VAE  + + + + R +  GH   
Sbjct: 84  NLKLALTAGIGSDHVDLQAANDRGITVAEVTGSNVVSVAEHVVMMILILVRNYVPGHEQA 143

Query: 68  ASG 70
             G
Sbjct: 144 IEG 146

NAD-dependent formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of a formate anion to carbon dioxide coupled with the reduction of NAD+ to NADH. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxy acid dehydrogenase family have 2 highly similar subdomains of the alpha/beta form, with NAD binding occurring in the cleft between subdomains. NAD contacts are primarily to the Rossmann-fold NAD-binding domain which is inserted within the linear sequence of the more diverse flavodoxin-like catalytic subdomain. Some related proteins have similar structural subdomain but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production from C1 compounds such as methanol, and in the stress responses of plants. NAD-dependent FDH is useful in cofactor regeneration in asymmetrical biocatalytic reduction processes, where FDH irreversibly oxidizes formate to carbon dioxide, while reducing the oxidized form of the cofactor to the reduced form. Length = 348

>gnl|CDD|233358 TIGR01327, PGDH, D-3-phosphoglycerate dehydrogenase

 Score = 35.0 bits (81), Expect = 0.003
 Identities = 21/78 (26%), Positives = 35/78 (44%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   LKVI    VG D++ ++   +RGI V      ++ + AE  + + +A +R   Q  
Sbjct: 59  AAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQAD 118

Query: 65  NCIASGTEKSQQHAITEL 82
             +  G    +    TEL
Sbjct: 119 ASLKEGEWDRKAFMGTEL 136

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli [Amino acid biosynthesis, Serine family]. Length = 525

>gnl|CDD|240625 cd05300, 2-Hacid_dh_1, Putative D-isomer specific 2-hydroxyacid dehydrogenase

 Score = 34.8 bits (81), Expect = 0.003
 Identities = 13/57 (22%), Positives = 26/57 (45%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
            A   L+ I + S G D L   ++  R + +     +    +AE+ +G  +A +R+ 
Sbjct: 55  PAAPRLRWIQSTSAGVDALLFPELLERDVVLTNARGIFGPPIAEYVLGYMLAFARKL 111

2-Hydroxyacid dehydrogenases catalyze the conversion of a wide variety of D-2-hydroxy acids to their corresponding keto acids. The general mechanism is (R)-lactate + acceptor to pyruvate + reduced acceptor. Formate/glycerate and related dehydrogenases of the D-specific 2-hydroxyacid dehydrogenase superfamily include groups such as formate dehydrogenase, glycerate dehydrogenase, L-alanine dehydrogenase, and S-adenosylhomocysteine hydrolase. Despite often low sequence identity, these proteins typically have a characteristic arrangement of 2 similar subdomains of the alpha/beta Rossmann fold NAD+ binding form. The NAD+ binding domain is inserted within the linear sequence of the mostly N-terminal catalytic domain, which has a similar domain structure to the internal NAD binding domain. Structurally, these domains are connected by extended alpha helices and create a cleft in which NAD is bound, primarily to the C-terminal portion of the 2nd (internal) domain. Some related proteins have similar structural subdomains but with a tandem arrangement of the catalytic and NAD-binding subdomains in the linear sequence. While many members of this family are dimeric, alanine DH is hexameric and phosphoglycerate DH is tetrameric. Formate dehydrogenase (FDH) catalyzes the NAD+-dependent oxidation of formate ion to carbon dioxide with the concomitant reduction of NAD+ to NADH. FDHs of this family contain no metal ions or prosthetic groups. Catalysis occurs though direct transfer of the hydride ion to NAD+ without the stages of acid-base catalysis typically found in related dehydrogenases. FDHs are found in all methylotrophic microorganisms in energy production and in the stress responses of plants. Length = 313

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	109
COG1052	324	LdhA Lactate dehydrogenase and related dehydrogena	100.0
PRK08410	311	2-hydroxyacid dehydrogenase; Provisional	99.97
COG0111	324	SerA Phosphoglycerate dehydrogenase and related de	99.97
PRK06487	317	glycerate dehydrogenase; Provisional	99.97
PRK15409	323	bifunctional glyoxylate/hydroxypyruvate reductase	99.97
PRK11790	409	D-3-phosphoglycerate dehydrogenase; Provisional	99.96
PRK13243	333	glyoxylate reductase; Reviewed	99.96
PRK06932	314	glycerate dehydrogenase; Provisional	99.96
TIGR01327	525	PGDH D-3-phosphoglycerate dehydrogenase. This mode	99.96
PLN03139	386	formate dehydrogenase; Provisional	99.96
PRK07574	385	formate dehydrogenase; Provisional	99.95
PRK13581	526	D-3-phosphoglycerate dehydrogenase; Provisional	99.95
PLN02306	386	hydroxypyruvate reductase	99.95
PLN02928	347	oxidoreductase family protein	99.94
PRK12480	330	D-lactate dehydrogenase; Provisional	99.94
PRK06436	303	glycerate dehydrogenase; Provisional	99.94
PRK08605	332	D-lactate dehydrogenase; Validated	99.93
KOG0069|consensus	336		99.93
KOG0068|consensus	406		99.93
PRK15469	312	ghrA bifunctional glyoxylate/hydroxypyruvate reduc	99.9
PRK15438	378	erythronate-4-phosphate dehydrogenase PdxB; Provis	99.9
PRK00257	381	erythronate-4-phosphate dehydrogenase; Validated	99.88
PF00389	133	2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydr	99.56
KOG0067|consensus	435		99.45
PF02826	178	2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehy	99.38
TIGR02853	287	spore_dpaA dipicolinic acid synthetase, A subunit.	99.12
PTZ00075	476	Adenosylhomocysteinase; Provisional	98.75
PRK08306	296	dipicolinate synthase subunit A; Reviewed	98.13
PRK05476	425	S-adenosyl-L-homocysteine hydrolase; Provisional	95.98
PRK13403	335	ketol-acid reductoisomerase; Provisional	95.82
PLN02494	477	adenosylhomocysteinase	95.35
PF00670	162	AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase	94.49
TIGR00936	406	ahcY adenosylhomocysteinase. This enzyme hydrolyze	93.52
cd01075	200	NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of l	93.01
cd00401	413	AdoHcyase S-adenosyl-L-homocysteine hydrolase (Ado	91.1
COG0027	394	PurT Formate-dependent phosphoribosylglycinamide f	89.55
TIGR00518	370	alaDH alanine dehydrogenase. The family of known L	87.19
TIGR02964	246	xanthine_xdhC xanthine dehydrogenase accessory pro	85.61
PRK05479	330	ketol-acid reductoisomerase; Provisional	84.01
PF03720	106	UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogen	82.94
PLN02545	295	3-hydroxybutyryl-CoA dehydrogenase	82.82
PRK14619	308	NAD(P)H-dependent glycerol-3-phosphate dehydrogena	82.69
PLN02712	667	arogenate dehydrogenase	81.76
PLN02256	304	arogenate dehydrogenase	80.87
TIGR02114	227	coaB_strep phosphopantothenate--cysteine ligase, s	80.21

>COG1052 LdhA Lactate dehydrogenase and related dehydrogenases [Energy production and conversion / Coenzyme metabolism / General function prediction only]

Probab=100.00  E-value=1.2e-32  Score=200.36  Aligned_cols=106  Identities=27%  Similarity=0.312  Sum_probs=96.5

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc----c
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ----H   77 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~----~   77 (109)
                      |+ .+|+||+|++.|+||||||+++++++||.|+|+|++++++||||+++++|++.|++.+.++.+++|+|..+.    .
T Consensus        61 l~-~~p~LKlIa~~~~G~D~vDl~aa~~~gI~Vtnvp~~~t~sVAe~~~aLiLa~~R~~~~~~~~~r~g~w~~~~~~~~~  139 (324)
T COG1052          61 LE-KLPGLKLIATRSAGYDNVDLEAAKERGITVTNVPGYSTEAVAEHAVALILALARRIHEGDRRVREGNWSLSGGPDPL  139 (324)
T ss_pred             HH-hCCCcEEEEEeccccCcccHHHHHHCCcEEEeCCCCCchHHHHHHHHHHHHHhhchHHHHHHHhcCcccccCCcccc
Confidence            44 569999999999999999999999999999999999999999999999999999999999999999997653    2


Q ss_pred             hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+.++.         |+||+++|+++++|||+|+||||++
T Consensus       140 ~~~~l~gktvGIiG~GrIG~avA~r~~~Fgm~v~y~~~~~  179 (324)
T COG1052         140 LGFDLRGKTLGIIGLGRIGQAVARRLKGFGMKVLYYDRSP  179 (324)
T ss_pred             cccCCCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCC
Confidence            233332         7999999999999999999999986

>PRK08410 2-hydroxyacid dehydrogenase; Provisional

Probab=99.97  E-value=6.3e-31  Score=190.65  Aligned_cols=104  Identities=19%  Similarity=0.261  Sum_probs=94.0

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A   78 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~   78 (109)
                      .+|+||||++.|+|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|.....      .
T Consensus        60 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~VAE~a~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  139 (311)
T PRK08410         60 QLPNLKLICITATGTNNVDIEYAKKKGIAVKNVAGYSTESVAQHTFAMLLSLLGRINYYDRYVKSGEYSESPIFTHISRP  139 (311)
T ss_pred             hCCCCeEEEEcccccccccHHHHHhCCCEEEcCCCCCChHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCCccccCcc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999964311      1


Q ss_pred             hhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.++.         |+||+++|+++++|||+|++|||+.
T Consensus       140 ~~~L~gktvGIiG~G~IG~~vA~~~~~fgm~V~~~d~~~  178 (311)
T PRK08410        140 LGEIKGKKWGIIGLGTIGKRVAKIAQAFGAKVVYYSTSG  178 (311)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhhcCCEEEEECCCc
Confidence            12333         7899999999999999999999864

>COG0111 SerA Phosphoglycerate dehydrogenase and related dehydrogenases [Amino acid transport and metabolism]

Probab=99.97  E-value=7.1e-31  Score=191.10  Aligned_cols=104  Identities=26%  Similarity=0.282  Sum_probs=95.8

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+|+.++.+||||+++++|+++|+++.+++.+++|.|.+....+.++. 
T Consensus        63 ~~~~Lk~I~~~g~Gvd~id~~~~~~~gi~V~nap~~na~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~g~el~g  142 (324)
T COG0111          63 AAPNLKAIGRAGAGVDNIDLEAATKRGILVVNAPGGNAISVAELVLALLLALARRIPDADASQRRGEWDRKAFRGTELAG  142 (324)
T ss_pred             hCCCceEEEEccccccccCHHHHhhcCCEEEeCCCcchHHHHHHHHHHHHHHhcCchhhHHHHHcCCccccccccccccC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999986333334443 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |+||+++|+++++|||+|++|||+.
T Consensus       143 kTvGIiG~G~IG~~va~~l~afgm~v~~~d~~~  175 (324)
T COG0111         143 KTVGIIGLGRIGRAVAKRLKAFGMKVIGYDPYS  175 (324)
T ss_pred             CEEEEECCCHHHHHHHHHHHhCCCeEEEECCCC
Confidence                    7899999999999999999999964

>PRK06487 glycerate dehydrogenase; Provisional

Probab=99.97  E-value=4e-30  Score=186.90  Aligned_cols=103  Identities=21%  Similarity=0.284  Sum_probs=93.4

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A   78 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~   78 (109)
                      .+|+||||++.++|+|++|++++.++||.|+|+||+++++||||++++||++.|+++.+++.+++|.|.....      .
T Consensus        63 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~  142 (317)
T PRK06487         63 AAPQLKLILVAATGTNNVDLAAARERGITVCNCQGYGTPSVAQHTLALLLALATRLPDYQQAVAAGRWQQSSQFCLLDFP  142 (317)
T ss_pred             hCCCCeEEEEcCccccccCHHHHHHCCCEEEeCCCCCcchHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCcccccccCc
Confidence            5899999999999999999999999999999999999999999999999999999999999999999964421      1


Q ss_pred             hhhhc---------cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +.++.         |+||+++|+++++|||+|++|||+
T Consensus       143 ~~~l~gktvgIiG~G~IG~~vA~~l~~fgm~V~~~~~~  180 (317)
T PRK06487        143 IVELEGKTLGLLGHGELGGAVARLAEAFGMRVLIGQLP  180 (317)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            12332         789999999999999999999986

>PRK15409 bifunctional glyoxylate/hydroxypyruvate reductase B; Provisional

Probab=99.97  E-value=4.1e-30  Score=187.23  Aligned_cols=106  Identities=21%  Similarity=0.246  Sum_probs=94.9

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---ch
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HA   78 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~   78 (109)
                      |+ .+|+||+|++.++|+|+||++++.++||.|+|+||+++++||||++++||++.|+++.+++.+++|+|....   ..
T Consensus        61 l~-~~p~Lk~I~~~g~G~d~id~~~~~~~gI~V~n~~~~~~~~VAE~~~~l~L~~~R~i~~~~~~~~~g~w~~~~~~~~~  139 (323)
T PRK15409         61 LE-KMPKLRAASTISVGYDNFDVDALTARKILLMHTPTVLTETVADTLMALVLSTARRVVEVAERVKAGEWTASIGPDWF  139 (323)
T ss_pred             Hh-hCCCCeEEEECceecccccHHHHHHCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCcccCccccc
Confidence            44 689999999999999999999999999999999999999999999999999999999999999999996431   12


Q ss_pred             hhhhc---------cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800         79 ITELI---------TQSDTNHTQRCL-ASIMQLVYSTCYN  108 (109)
Q Consensus        79 ~~~l~---------G~IG~~va~~~~-~fg~~V~~~~r~~  108 (109)
                      +.++.         |+||+++|++++ +|||+|+||||+.
T Consensus       140 g~~L~gktvGIiG~G~IG~~va~~l~~~fgm~V~~~~~~~  179 (323)
T PRK15409        140 GTDVHHKTLGIVGMGRIGMALAQRAHFGFNMPILYNARRH  179 (323)
T ss_pred             cCCCCCCEEEEEcccHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            33443         789999999998 9999999999874

>PRK11790 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.96  E-value=4.7e-30  Score=191.78  Aligned_cols=104  Identities=22%  Similarity=0.232  Sum_probs=94.8

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||||++.|+|+|+||++++.++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|+|......+.+|. 
T Consensus        72 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~aVAE~~i~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~L~g  151 (409)
T PRK11790         72 AAEKLVAIGCFCIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGEIILLLRGIPEKNAKAHRGGWNKSAAGSFEVRG  151 (409)
T ss_pred             hCCCCeEEEECceecccccHHHHHhCCCEEEeCCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCcccccccCcccCCC
Confidence            6899999999999999999999999999999999999999999999999999999999999999999975432233443 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |+||+++|+++++|||+|++|||+.
T Consensus       152 ktvGIiG~G~IG~~vA~~~~~fGm~V~~~d~~~  184 (409)
T PRK11790        152 KTLGIVGYGHIGTQLSVLAESLGMRVYFYDIED  184 (409)
T ss_pred             CEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence                    7899999999999999999999864

>PRK13243 glyoxylate reductase; Reviewed

Probab=99.96  E-value=1.7e-29  Score=184.69  Aligned_cols=104  Identities=22%  Similarity=0.365  Sum_probs=94.1

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc----c---
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ----H---   77 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~----~---   77 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|....    +   
T Consensus        64 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~~  143 (333)
T PRK13243         64 AAPRLRIVANYAVGYDNIDVEEATRRGIYVTNTPGVLTEATADFAWALLLATARRLVEADHFVRSGEWKRRGVAWHPLMF  143 (333)
T ss_pred             hCCCCeEEEecCccccccCHHHHHHcCCEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccc
Confidence            689999999999999999999999999999999999999999999999999999999999999999996421    1   


Q ss_pred             hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+.++.         |+||+.+|+++++|||+|++|||+.
T Consensus       144 ~g~~L~gktvgIiG~G~IG~~vA~~l~~~G~~V~~~d~~~  183 (333)
T PRK13243        144 LGYDVYGKTIGIIGFGRIGQAVARRAKGFGMRILYYSRTR  183 (333)
T ss_pred             cccCCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            223443         7899999999999999999999874

>PRK06932 glycerate dehydrogenase; Provisional

Probab=99.96  E-value=1.8e-29  Score=183.32  Aligned_cols=104  Identities=22%  Similarity=0.196  Sum_probs=93.4

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc------h
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH------A   78 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~------~   78 (109)
                      .+|+||||++.++|+|+||.+++.++||.|+|+||+++++||||+++++|++.|+++.+++.++++.|.....      .
T Consensus        62 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~i~l~l~~~R~~~~~~~~~~~~~W~~~~~~~~~~~~  141 (314)
T PRK06932         62 QLPKLKLIAITATGTNNVDLVAAKELGIAVKNVTGYSSTTVPEHVLGMIFALKHSLMGWYRDQLSDRWATCKQFCYFDYP  141 (314)
T ss_pred             hCcCCeEEEEecccccccCHHHHHhCCCEEEeCCCCChhHHHHHHHHHHHHHHhChHHHHHHHHcCCCCcCccccccCCc
Confidence            6899999999999999999999999999999999999999999999999999999999999999999964311      1


Q ss_pred             hhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         79 ITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        79 ~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.++.         |+||+++|+++++|||+|++|||+.
T Consensus       142 ~~~l~gktvgIiG~G~IG~~va~~l~~fg~~V~~~~~~~  180 (314)
T PRK06932        142 ITDVRGSTLGVFGKGCLGTEVGRLAQALGMKVLYAEHKG  180 (314)
T ss_pred             ccccCCCEEEEECCCHHHHHHHHHHhcCCCEEEEECCCc
Confidence            12332         7899999999999999999999853

>TIGR01327 PGDH D-3-phosphoglycerate dehydrogenase

Probab=99.96  E-value=9e-29  Score=189.68  Aligned_cols=105  Identities=24%  Similarity=0.285  Sum_probs=95.3

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      |+ .+|+||||+..++|+|+||++++.++||.|+|+||+++.+||||++++||++.|+++.+++.+++|+|.+....+.+
T Consensus        57 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~  135 (525)
T TIGR01327        57 IA-AAPKLKVIGRAGVGVDNIDIEAATARGILVVNAPTGNTISAAEHALAMLLAAARNIPQADASLKEGEWDRKAFMGTE  135 (525)
T ss_pred             Hh-hCCCceEEEECCcccchhcHHHHHHCCCEEEeCCCcChHHHHHHHHHHHHHHhcCHHHHHHHHHcCCccccccCccc
Confidence            44 58999999999999999999999999999999999999999999999999999999999999999999754323334


Q ss_pred             hc---------cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         82 LI---------TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        82 l~---------G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +.         |+||+++|+++++|||+|++|||+
T Consensus       136 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~  170 (525)
T TIGR01327       136 LYGKTLGVIGLGRIGSIVAKRAKAFGMKVLAYDPY  170 (525)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCC
Confidence            43         789999999999999999999986

This model represents a long form of D-3-phosphoglycerate dehydrogenase, the serA gene of one pathway of serine biosynthesis. Shorter forms, scoring between trusted and noise cutoff, include SerA from E. coli.

>PLN03139 formate dehydrogenase; Provisional

Probab=99.96  E-value=1.5e-28  Score=182.22  Aligned_cols=104  Identities=22%  Similarity=0.241  Sum_probs=93.8

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL   82 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l   82 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|++|+++++||||++++||++.|++..+++.+++|.|....  ..+.++
T Consensus       118 ~ap~LK~I~~~g~G~D~iDl~aa~~~gI~V~n~~g~na~sVAE~al~liL~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L  197 (386)
T PLN03139        118 KAKNLELLLTAGIGSDHIDLPAAAAAGLTVAEVTGSNVVSVAEDELMRILILLRNFLPGYHQVVSGEWNVAGIAYRAYDL  197 (386)
T ss_pred             hCCCccEEEECCccccccCHHHHHHCCeEEEECCCcCcHHHHHHHHHHHHHHHcCcHHHHHHHHhCCCccccccCCCcCC
Confidence            589999999999999999999999999999999999999999999999999999999999999999996421  122333


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       198 ~gktVGIVG~G~IG~~vA~~L~afG~~V~~~d~~~  232 (386)
T PLN03139        198 EGKTVGTVGAGRIGRLLLQRLKPFNCNLLYHDRLK  232 (386)
T ss_pred             CCCEEEEEeecHHHHHHHHHHHHCCCEEEEECCCC
Confidence            2         7899999999999999999999874

>PRK07574 formate dehydrogenase; Provisional

Probab=99.95  E-value=1.7e-28  Score=182.05  Aligned_cols=104  Identities=23%  Similarity=0.267  Sum_probs=94.2

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL   82 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l   82 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+++.++++||||+++++|++.|++..+++.+++|+|....  ..+.++
T Consensus       111 ~~p~LK~I~~~g~G~D~id~~aa~~~gI~V~n~~g~~a~~VAE~al~l~L~l~R~~~~~~~~~~~g~W~~~~~~~~~~~L  190 (385)
T PRK07574        111 KAPNLKLAITAGIGSDHVDLQAASEHGITVAEVTGSNSISVAEHVVMMILALVRNYEPSHRQAVEGGWNIADCVSRSYDL  190 (385)
T ss_pred             hCCCCcEEEECCcccccccHHHHHHCCcEEEcCCCCchHHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCcccccccceec
Confidence            689999999999999999999999999999999999999999999999999999999999999999996432  112233


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|++|++|||+|++|||+.
T Consensus       191 ~gktVGIvG~G~IG~~vA~~l~~fG~~V~~~dr~~  225 (385)
T PRK07574        191 EGMTVGIVGAGRIGLAVLRRLKPFDVKLHYTDRHR  225 (385)
T ss_pred             CCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            2         7899999999999999999999974

>PRK13581 D-3-phosphoglycerate dehydrogenase; Provisional

Probab=99.95  E-value=2.2e-28  Score=187.58  Aligned_cols=106  Identities=26%  Similarity=0.316  Sum_probs=95.5

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      |+ .+|+||||++.|+|+|++|++++.++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|.|.+....+.+
T Consensus        59 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~p~~~~~~vAE~~l~l~L~~~R~~~~~~~~~~~g~W~~~~~~g~~  137 (526)
T PRK13581         59 LE-AAKNLKVIGRAGVGVDNVDVPAATRRGIIVVNAPTGNTISAAEHTIALMLALARNIPQAHASLKAGKWERKKFMGVE  137 (526)
T ss_pred             Hh-hCCCCeEEEECCcccccccHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHcCHHHHHHHHHcCCCCccCccccc
Confidence            44 68999999999999999999999999999999999999999999999999999999999999999999753322333


Q ss_pred             hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.         |+||+.+|+++++|||+|++|||+.
T Consensus       138 l~gktvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~  173 (526)
T PRK13581        138 LYGKTLGIIGLGRIGSEVAKRAKAFGMKVIAYDPYI  173 (526)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEECCCC
Confidence            32         7899999999999999999999863

>PLN02306 hydroxypyruvate reductase

Probab=99.95  E-value=5.4e-28  Score=179.48  Aligned_cols=104  Identities=21%  Similarity=0.292  Sum_probs=92.3

Q ss_pred             CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hh
Q psy15800          5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AI   79 (109)
Q Consensus         5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~   79 (109)
                      .+|+  ||+|++.++|+|+||++++.++||+|+|+||+++++||||+++++|++.|+++.+++.+++|+|..+.+   .+
T Consensus        81 ~~~~l~lk~I~~~~~G~D~iD~~aa~~~gI~V~n~pg~~~~~VAE~al~liLal~R~i~~~~~~~~~g~w~~~~~~~~~g  160 (386)
T PLN02306         81 ALSKAGGKAFSNMAVGYNNVDVEAANKYGIAVGNTPGVLTETTAELAASLSLAAARRIVEADEFMRAGLYEGWLPHLFVG  160 (386)
T ss_pred             hCCcCCceEEEECCcccccccHHHHHHCCCEEEECCCcCHHHHHHHHHHHHHHHHhChHHHHHHHHcCCCccccccccCC
Confidence            4674  699999999999999999999999999999999999999999999999999999999999999864421   23


Q ss_pred             hhhc---------cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800         80 TELI---------TQSDTNHTQRCL-ASIMQLVYSTCYN  108 (109)
Q Consensus        80 ~~l~---------G~IG~~va~~~~-~fg~~V~~~~r~~  108 (109)
                      .++.         |+||+++|++++ +|||+|++|||+.
T Consensus       161 ~~L~gktvGIiG~G~IG~~vA~~l~~~fGm~V~~~d~~~  199 (386)
T PLN02306        161 NLLKGQTVGVIGAGRIGSAYARMMVEGFKMNLIYYDLYQ  199 (386)
T ss_pred             cCCCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCC
Confidence            3343         789999999985 9999999999874

>PLN02928 oxidoreductase family protein

Probab=99.94  E-value=5.5e-27  Score=172.24  Aligned_cols=101  Identities=17%  Similarity=0.212  Sum_probs=91.3

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCC---CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV---SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~---~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      .+|+||||++.++|+|++|++++.++||.|+|+|++   ++.+||||+++++|++.|++..+.+.++++.|...  .+.+
T Consensus        79 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~~~~vAE~av~l~L~~~R~~~~~~~~~~~~~w~~~--~~~~  156 (347)
T PLN02928         79 RASQMKLIMQFGVGLEGVDVDAATKHGIKVARIPSEGTGNAASCAEMAIYLMLGLLRKQNEMQISLKARRLGEP--IGDT  156 (347)
T ss_pred             cCCCceEEEECCcccCcCcHHHHHhCCCEEEECCCCCCcChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCcccc--cccC
Confidence            589999999999999999999999999999999985   78999999999999999999999999999999542  2222


Q ss_pred             h---------ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         82 L---------ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        82 l---------~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +         .|+||+++|+++++|||+|++|||+
T Consensus       157 l~gktvGIiG~G~IG~~vA~~l~afG~~V~~~dr~  191 (347)
T PLN02928        157 LFGKTVFILGYGAIGIELAKRLRPFGVKLLATRRS  191 (347)
T ss_pred             CCCCEEEEECCCHHHHHHHHHHhhCCCEEEEECCC
Confidence            3         2799999999999999999999986

>PRK12480 D-lactate dehydrogenase; Provisional

Probab=99.94  E-value=5.3e-27  Score=171.32  Aligned_cols=104  Identities=18%  Similarity=0.217  Sum_probs=91.5

Q ss_pred             CCC--CceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhh
Q psy15800          5 AGE--NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITE   81 (109)
Q Consensus         5 ~~p--~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~   81 (109)
                      .+|  +||+|++.++|+|+||++++.++||.|+|+|++++++||||+++++|++.|+++.+++.+++|.|.... ..+.+
T Consensus        64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~~~~w~~~~~~~~  143 (330)
T PRK12480         64 KLESYGIKQIAQRTAGFDMYDLDLAKKHNIVISNVPSYSPETIAEYSVSIALQLVRRFPDIERRVQAHDFTWQAEIMSKP  143 (330)
T ss_pred             hhhhcCceEEEecccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHHHhHHHHHHHHHhCCcccccccCccc
Confidence            455  899999999999999999999999999999999999999999999999999999999999998763211 12233


Q ss_pred             hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.         |.||+.+|+++++|||+|++|||+.
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~G~~V~~~d~~~  179 (330)
T PRK12480        144 VKNMTVAIIGTGRIGAATAKIYAGFGATITAYDAYP  179 (330)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            32         7899999999999999999999874

>PRK06436 glycerate dehydrogenase; Provisional

Probab=99.94  E-value=2.5e-26  Score=166.14  Aligned_cols=101  Identities=20%  Similarity=0.178  Sum_probs=89.1

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||||++.++|+|++|.+++.++++.++|. |.++++||||+++++|++.|+++.+.+.+++|+|....  ..++. 
T Consensus        46 ~~~~Lk~I~~~~aG~D~id~~~~~~~~i~~~~~-g~~~~~VAE~~l~l~L~l~R~i~~~~~~~~~g~w~~~~--~~~L~g  122 (303)
T PRK06436         46 PGKKTKMIQSLSAGVDHIDVSGIPENVVLCSNA-GAYSISVAEHAFALLLAWAKNICENNYNMKNGNFKQSP--TKLLYN  122 (303)
T ss_pred             CCCCeEEEEECCcccCcccHHHHHhCCeEEEcC-CCCcHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCCCC--CCCCCC
Confidence            468999999999999999999999888777775 77899999999999999999999999999999997432  22332 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |+||+++|+++++|||+|++|||+.
T Consensus       123 ktvgIiG~G~IG~~vA~~l~afG~~V~~~~r~~  155 (303)
T PRK06436        123 KSLGILGYGGIGRRVALLAKAFGMNIYAYTRSY  155 (303)
T ss_pred             CEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence                    7899999999999999999999864

>PRK08605 D-lactate dehydrogenase; Validated

Probab=99.93  E-value=2.5e-26  Score=167.92  Aligned_cols=104  Identities=16%  Similarity=0.152  Sum_probs=91.7

Q ss_pred             CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhh
Q psy15800          5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITE   81 (109)
Q Consensus         5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~   81 (109)
                      .+|+  ||+|++.|+|+|++|++++.++||.|+|+||+++++||||+++++|++.|++..+++.+++|.|.... ..+.+
T Consensus        64 ~~~~~~lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~~~~~~~~~~~~~~  143 (332)
T PRK08605         64 LLNELGIKQIAQRSAGFDTYDLELATKYNLIISNVPSYSPESIAEFTVTQAINLVRHFNQIQTKVREHDFRWEPPILSRS  143 (332)
T ss_pred             hhhhcCceEEEEcccccchhhHHHHHHCCCEEEeCCCCChHHHHHHHHHHHHHHhcChHHHHHHHHhCCcccccccccce
Confidence            5676  99999999999999999999999999999999999999999999999999999999999999873211 12333


Q ss_pred             hc---------cchHHHHHHHH-hhcCCEEEEEcccc
Q psy15800         82 LI---------TQSDTNHTQRC-LASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~---------G~IG~~va~~~-~~fg~~V~~~~r~~  108 (109)
                      +.         |.||+.+|+++ ++|||+|++|||+.
T Consensus       144 l~g~~VgIIG~G~IG~~vA~~L~~~~g~~V~~~d~~~  180 (332)
T PRK08605        144 IKDLKVAVIGTGRIGLAVAKIFAKGYGSDVVAYDPFP  180 (332)
T ss_pred             eCCCEEEEECCCHHHHHHHHHHHhcCCCEEEEECCCc
Confidence            43         78999999999 79999999999864

>KOG0069|consensus

Probab=99.93  E-value=3.2e-26  Score=166.34  Aligned_cols=105  Identities=30%  Similarity=0.420  Sum_probs=93.4

Q ss_pred             ccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---h-
Q psy15800          3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---A-   78 (109)
Q Consensus         3 ~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~-   78 (109)
                      .+.+|+||+|.+.|+|+||||+++|+++||+|+|+|+...++|||++++++|.+.|++...++.+++|+| .+..   . 
T Consensus        79 ~a~~p~lK~i~t~~vG~D~vDl~a~~krgI~V~nvp~~~~~~vAd~~~~lil~~~R~~~~g~~~~~~g~w-~~~~~~~~g  157 (336)
T KOG0069|consen   79 SALSPNLKLIVTMSVGYDHVDLEAARKRGIRVANVPDVLTDDVADLAVSLLLALLRRFSEGNEMVRNGGW-GWAGGWPLG  157 (336)
T ss_pred             hhcCCCeeEEEEeecccchhhHHHHHhcCceEeccCCcchHHHHHHHHHHHHHHHhhhhhhhhhhhcCCc-cccCCcccc
Confidence            3457999999999999999999999999999999999999999999999999999999999999999999 3321   1 


Q ss_pred             ----hhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         79 ----ITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        79 ----~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                          +.++    .|+||+.+|++|++|||.+.|++|+.
T Consensus       158 ~~~~gK~vgilG~G~IG~~ia~rL~~Fg~~i~y~~r~~  195 (336)
T KOG0069|consen  158 YDLEGKTVGILGLGRIGKAIAKRLKPFGCVILYHSRTQ  195 (336)
T ss_pred             ccccCCEEEEecCcHHHHHHHHhhhhccceeeeecccC
Confidence                1121    28999999999999999999999864

>KOG0068|consensus

Probab=99.93  E-value=1.5e-26  Score=167.03  Aligned_cols=106  Identities=23%  Similarity=0.259  Sum_probs=97.5

Q ss_pred             ccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhh
Q psy15800          3 SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL   82 (109)
Q Consensus         3 ~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l   82 (109)
                      +++..+||+|.+.++|+|++|++++.++||.|.|+|.+++.++||+++++++++.|++++....+++|+|.+....+.++
T Consensus        65 ~aa~~~lkvVgrag~G~dNVDL~AAte~gi~Vvn~P~~Ns~saAEltigli~SLaR~i~~A~~s~k~g~wnr~~~~G~el  144 (406)
T KOG0068|consen   65 EAAAGGLKVVGRAGIGVDNVDLKAATENGILVVNTPTANSRSAAELTIGLILSLARQIGQASASMKEGKWNRVKYLGWEL  144 (406)
T ss_pred             HhhcCCeEEEEecccCccccChhhHHhCCeEEEeCCCCChHHHHHHHHHHHHHHhhhcchhheeeecCceeecceeeeEE
Confidence            33567899999999999999999999999999999999999999999999999999999999999999998766555554


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+++|+++++|||+|++|||..
T Consensus       145 ~GKTLgvlG~GrIGseVA~r~k~~gm~vI~~dpi~  179 (406)
T KOG0068|consen  145 RGKTLGVLGLGRIGSEVAVRAKAMGMHVIGYDPIT  179 (406)
T ss_pred             eccEEEEeecccchHHHHHHHHhcCceEEeecCCC
Confidence            3         7899999999999999999999974

>PRK15469 ghrA bifunctional glyoxylate/hydroxypyruvate reductase A; Provisional

Probab=99.90  E-value=8.6e-24  Score=153.47  Aligned_cols=103  Identities=12%  Similarity=0.081  Sum_probs=86.5

Q ss_pred             CCCceEEEecCccCCcccHHH-----HhhcCcEEEecCC-CCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc--
Q psy15800          6 GENLKVISTFSVGHDHLHLDQ-----IKSRGIRVGTVGP-VSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH--   77 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~-----~~~~gi~v~n~~g-~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~--   77 (109)
                      .|+||||++.++|+|++|.+.     +.++||+|+|.++ .++.+||||+++++|++.|+++.+.+.++++.|.....  
T Consensus        54 ~~~Lk~I~~~~aG~d~i~~~~~~~~~~~~~~i~v~~~~~~~~~~~vAE~~l~~~L~~~r~~~~~~~~~~~~~w~~~~~~~  133 (312)
T PRK15469         54 GRDLKAVFALGAGVDSILSKLQAHPEMLDPSVPLFRLEDTGMGEQMQEYAVSQVLHWFRRFDDYQALQNSSHWQPLPEYH  133 (312)
T ss_pred             cCCceEEEEcccccchhhhhhccccccCCCCceEEEecCCcccHHHHHHHHHHHHHHHcChHHHHHHHHhCCcCCCCCCC
Confidence            489999999999999998332     3458999999864 68999999999999999999999999999999964321  


Q ss_pred             -hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 -AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 -~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                       .+..+    .|+||+++|+++++|||+|++|||+.
T Consensus       134 l~g~tvgIvG~G~IG~~vA~~l~afG~~V~~~~~~~  169 (312)
T PRK15469        134 REDFTIGILGAGVLGSKVAQSLQTWGFPLRCWSRSR  169 (312)
T ss_pred             cCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCC
Confidence             11222    28999999999999999999999865

>PRK15438 erythronate-4-phosphate dehydrogenase PdxB; Provisional

Probab=99.90  E-value=2.7e-23  Score=153.93  Aligned_cols=93  Identities=16%  Similarity=0.139  Sum_probs=79.1

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcc-cchhhhhcc
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQ-QHAITELIT   84 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~-~~~~~~l~G   84 (109)
                      .|+||||++.++|+||||.+++.++||.|+|+||+++.+||||+++++|++.|+..          |.-. ...+.--.|
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~~~~~lL~l~r~~g----------~~L~gktvGIIG~G  125 (378)
T PRK15438         56 GKPIKFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSSLLMLAERDG----------FSLHDRTVGIVGVG  125 (378)
T ss_pred             CCCCeEEEECcccccccCHHHHHHCCCEEEECCCcCchHHHHHHHHHHHHHhccCC----------CCcCCCEEEEECcC
Confidence            58999999999999999999999999999999999999999999999999999731          2111 111111248


Q ss_pred             chHHHHHHHHhhcCCEEEEEcccc
Q psy15800         85 QSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        85 ~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +||+++|+++++|||+|++|||..
T Consensus       126 ~IG~~vA~~l~a~G~~V~~~dp~~  149 (378)
T PRK15438        126 NVGRRLQARLEALGIKTLLCDPPR  149 (378)
T ss_pred             HHHHHHHHHHHHCCCEEEEECCcc
Confidence            999999999999999999999864

>PRK00257 erythronate-4-phosphate dehydrogenase; Validated

Probab=99.88  E-value=1.6e-22  Score=149.96  Aligned_cols=94  Identities=14%  Similarity=0.167  Sum_probs=78.4

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccc
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQ   85 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~   85 (109)
                      .|+||||++.++|+||||.+++.++||.|+|+||+++.+||||+++++|++.|+..        .+.. ....+.--.|+
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~napg~na~aVAE~v~~~lL~l~r~~g--------~~l~-gktvGIIG~G~  126 (381)
T PRK00257         56 GSRVRFVGTCTIGTDHLDLDYFAEAGITWSSAPGCNARGVVDYVLGSLLTLAEREG--------VDLA-ERTYGVVGAGH  126 (381)
T ss_pred             CCCCeEEEECCccccccCHHHHHHCCCEEEECCCcChHHHHHHHHHHHHHHhcccC--------CCcC-cCEEEEECCCH
Confidence            48999999999999999999999999999999999999999999999999998621        0110 11111112489


Q ss_pred             hHHHHHHHHhhcCCEEEEEcccc
Q psy15800         86 SDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        86 IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ||+.+|+++++|||+|++|||..
T Consensus       127 IG~~va~~l~a~G~~V~~~Dp~~  149 (381)
T PRK00257        127 VGGRLVRVLRGLGWKVLVCDPPR  149 (381)
T ss_pred             HHHHHHHHHHHCCCEEEEECCcc
Confidence            99999999999999999999864

>PF00389 2-Hacid_dh: D-isomer specific 2-hydroxyacid dehydrogenase, catalytic domain; InterPro: IPR006139 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.56  E-value=1.6e-15  Score=97.74  Aligned_cols=45  Identities=44%  Similarity=0.573  Sum_probs=40.9

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHH
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN   49 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~   49 (109)
                      .+|+||||+..|+|+|+||++++.++||.|+|+||+++.+||||+
T Consensus        57 ~~~~Lk~I~~~~~G~d~id~~~a~~~gI~V~n~~g~~~~aVAE~a  101 (133)
T PF00389_consen   57 AAPNLKLISTAGAGVDNIDLEAAKERGIPVTNVPGYNAEAVAEHA  101 (133)
T ss_dssp             HHTT-SEEEESSSSCTTB-HHHHHHTTSEEEE-TTTTHHHHHHHH
T ss_pred             ccceeEEEEEcccccCcccHHHHhhCeEEEEEeCCcCCcchhccc
Confidence            469999999999999999999999999999999999999999999

The catalytic domain contains a number of conserved charged residues which may play a role in the catalytic mechanism. The NAD-binding domain is described in IPR006140 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0008152 metabolic process, 0055114 oxidation-reduction process; PDB: 2DLD_A 2G76_B 3DC2_B 1YGY_B 3DDN_A 3KB6_B 3K5P_A 3EVT_A 1WWK_B 1GDH_A ....

>KOG0067|consensus

Probab=99.45  E-value=5e-14  Score=103.35  Aligned_cols=105  Identities=16%  Similarity=0.185  Sum_probs=92.5

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhh----
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAIT----   80 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~----   80 (109)
                      .++.||++...+.|+|++|+.++.+.+|.|||.|+..-+.+|+-++-++|.++|+-....+..++|.|........    
T Consensus        92 kfkalRv~~rig~g~dn~dikaAseL~iavC~ip~~~Ve~~a~stl~hIl~l~rrntw~cq~l~eg~~~q~~~q~~e~a~  171 (435)
T KOG0067|consen   92 KFKALRVIVRIGSGYDNIDIKAASELGIAVCNIPSDAVEETADSTLCHILNLYRRNTWLCQALREGTCTQGLEQVREAAC  171 (435)
T ss_pred             HhhhhceeeeeccccchhhhhhhhhheeeeecccchhHHHHHHHHHHHHHhhhcccchhhhhhcccceeechhhhhhhhh
Confidence            5678999999999999999999999999999999999999999999999999999999999999999964321111    


Q ss_pred             --------hh----ccchHHHHHHHHhhcCCEEEEEccccC
Q psy15800         81 --------EL----ITQSDTNHTQRCLASIMQLVYSTCYNQ  109 (109)
Q Consensus        81 --------~l----~G~IG~~va~~~~~fg~~V~~~~r~~~  109 (109)
                              .+    .|++|+.++.++++||..|+.|||+.+
T Consensus       172 g~~~~~G~~~g~~g~gr~g~av~~~A~afg~~~ifydp~~~  212 (435)
T KOG0067|consen  172 GLARIRGPTLGLIGFGRTGQAVALRAKAFGFVVIFYDPYLI  212 (435)
T ss_pred             ccccccccceeeeccccccceehhhhhcccceeeeecchhh
Confidence                    11    268999999999999999999999853

>PF02826 2-Hacid_dh_C: D-isomer specific 2-hydroxyacid dehydrogenase, NAD binding domain; InterPro: IPR006140 A number of NAD-dependent 2-hydroxyacid dehydrogenases which seem to be specific for the D-isomer of their substrate have been shown to be functionally and structurally related

Probab=99.38  E-value=3.4e-13  Score=90.92  Aligned_cols=59  Identities=20%  Similarity=0.168  Sum_probs=47.3

Q ss_pred             HHHHHHHhcCchHhHHHHHcCCC-Ccccchhhhh---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         50 IGLAIAVSRRFQQGHNCIASGTE-KSQQHAITEL---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        50 l~~~L~l~R~~~~~~~~~~~g~w-~~~~~~~~~l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ++++|++.|+++.+++.++++.| ......+.++         .|+||+++|+++++|||+|++|||+.
T Consensus         1 i~l~L~~~R~~~~~~~~~~~~~W~~~~~~~~~~l~g~tvgIiG~G~IG~~vA~~l~~fG~~V~~~d~~~   69 (178)
T PF02826_consen    1 IALMLALLRRLPEYHEAQRNGEWASRERFPGRELRGKTVGIIGYGRIGRAVARRLKAFGMRVIGYDRSP   69 (178)
T ss_dssp             HHHHHHHHTTHHHHHHHHHTTBHHHHTTTTBS-STTSEEEEESTSHHHHHHHHHHHHTT-EEEEEESSC
T ss_pred             ChHHHHHHhCHHHHHHHHHcCCCCCCcCCCccccCCCEEEEEEEcCCcCeEeeeeecCCceeEEecccC
Confidence            58999999999999999999999 1111222233         27999999999999999999999985

All contain a glycine-rich region located in the central section of these enzymes, this region corresponds to the NAD-binding domain. The catalytic domain is described in IPR006139 from INTERPRO ; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0048037 cofactor binding, 0055114 oxidation-reduction process; PDB: 3JTM_A 3NAQ_B 3N7U_J 3KB6_B 3GG9_A 1QP8_B 2CUK_C 2W2L_D 2W2K_A 1WWK_A ....

>TIGR02853 spore_dpaA dipicolinic acid synthetase, A subunit

Probab=99.12  E-value=6.9e-11  Score=85.23  Aligned_cols=88  Identities=17%  Similarity=0.053  Sum_probs=68.7

Q ss_pred             ceEEEecCccCCcccHH-HHhhcCcEEE------ecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          9 LKVISTFSVGHDHLHLD-QIKSRGIRVG------TVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         9 Lk~i~~~~~G~d~id~~-~~~~~gi~v~------n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      ++.++...+|+++.|++ .+.++||+|+      |++.+++.++||+++++++...           .-++.... ..--
T Consensus        90 ~~~~~~~~~G~~~~~l~~~a~~~gi~v~~~~~~~~va~~n~~~~Ae~ai~~al~~~-----------~~~l~gk~-v~Ii  157 (287)
T TIGR02853        90 TKGHCTIYVGISNPYLEQLAADAGVKLIELFERDDVAIYNSIPTAEGAIMMAIEHT-----------DFTIHGSN-VMVL  157 (287)
T ss_pred             cCCCCEEEEecCCHHHHHHHHHCCCeEEEEEeccceEEEccHhHHHHHHHHHHHhc-----------CCCCCCCE-EEEE
Confidence            44688899999999998 9999999999      8999999999999999888531           01221111 1111


Q ss_pred             hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      -.|.||+.+|+.|++||++|++++|..
T Consensus       158 G~G~iG~avA~~L~~~G~~V~v~~R~~  184 (287)
T TIGR02853       158 GFGRTGMTIARTFSALGARVFVGARSS  184 (287)
T ss_pred             cChHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            138999999999999999999999864

This predicted Rossman fold-containing protein is the A subunit of dipicolinic acid synthetase as found in most, though not all, endospore-forming low-GC Gram-positive bacteria; it is absent in Clostridium. The B subunit is represented by TIGR02852. This protein is also known as SpoVFA.

>PTZ00075 Adenosylhomocysteinase; Provisional

Probab=98.75  E-value=1.5e-08  Score=77.41  Aligned_cols=85  Identities=8%  Similarity=-0.078  Sum_probs=62.9

Q ss_pred             ecCccCCccc-HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhh----ccchHH
Q psy15800         14 TFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL----ITQSDT   88 (109)
Q Consensus        14 ~~~~G~d~id-~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l----~G~IG~   88 (109)
                      -.++|+..+- +....+.+|+|+|+|+.+..+++|+++++++++.      +..++.+...   ..+..+    .|.||+
T Consensus       197 eTttGv~rl~~m~~~g~L~iPV~nv~d~~tk~~aD~~~G~~~s~~------d~~~R~~~~~---LaGKtVgVIG~G~IGr  267 (476)
T PTZ00075        197 ETTTGVHRLYKMLKKGELLFPAINVNDSVTKSKFDNIYGCRHSLI------DGIFRATDVM---IAGKTVVVCGYGDVGK  267 (476)
T ss_pred             cchHHHHHHHHHHHCCCCCceEEEeCCcchHHHHHHHHHHHHHHH------HHHHHhcCCC---cCCCEEEEECCCHHHH
Confidence            4567777652 3333456899999999999999999999999988      3344444321   111212    389999


Q ss_pred             HHHHHHhhcCCEEEEEccc
Q psy15800         89 NHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        89 ~va~~~~~fg~~V~~~~r~  107 (109)
                      .+|+++++|||+|+++++.
T Consensus       268 ~vA~rL~a~Ga~ViV~e~d  286 (476)
T PTZ00075        268 GCAQALRGFGARVVVTEID  286 (476)
T ss_pred             HHHHHHHHCCCEEEEEeCC
Confidence            9999999999999999654

>PRK08306 dipicolinate synthase subunit A; Reviewed

Probab=98.13  E-value=5.7e-06  Score=60.02  Aligned_cols=90  Identities=12%  Similarity=-0.052  Sum_probs=63.2

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCC------CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccch
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPV------SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHA   78 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~------~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~   78 (109)
                      ..|++..+. .|.+.++++ +.+.++||.+.+....      ++.+++|.++...+...           ..++....-.
T Consensus        90 ~l~~~~~v~-~G~~~~~~~-~~~~~~gi~~~~~~~~~~~~~~ns~~~aegav~~a~~~~-----------~~~l~g~kvl  156 (296)
T PRK08306         90 LTPEHCTIF-SGIANPYLK-ELAKETNRKLVELFERDDVAILNSIPTAEGAIMMAIEHT-----------PITIHGSNVL  156 (296)
T ss_pred             hcCCCCEEE-EecCCHHHH-HHHHHCCCeEEEEeccchhhhhccHhHHHHHHHHHHHhC-----------CCCCCCCEEE
Confidence            466776444 488889988 7888999999987754      88899999777644211           1122111100


Q ss_pred             hhhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         79 ITELITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        79 ~~~l~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                       ---.|.+|+.+++.|+.+|++|.++||+.
T Consensus       157 -ViG~G~iG~~~a~~L~~~Ga~V~v~~r~~  185 (296)
T PRK08306        157 -VLGFGRTGMTLARTLKALGANVTVGARKS  185 (296)
T ss_pred             -EECCcHHHHHHHHHHHHCCCEEEEEECCH
Confidence             01138999999999999999999999874

>PRK05476 S-adenosyl-L-homocysteine hydrolase; Provisional

Probab=95.98  E-value=0.0033  Score=47.96  Aligned_cols=90  Identities=7%  Similarity=-0.004  Sum_probs=51.6

Q ss_pred             EecCccCCcc-cHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHH
Q psy15800         13 STFSVGHDHL-HLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHT   91 (109)
Q Consensus        13 ~~~~~G~d~i-d~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va   91 (109)
                      =-.++|+..+ .+..-.+.+++|.|++.......-|...+.-.+....+....    +-..... ...---.|.||+.+|
T Consensus       154 EeTttGv~rl~~~~~~~~l~~Pv~~vn~s~~K~~~dn~~gt~~s~~~ai~rat----~~~l~Gk-~VlViG~G~IG~~vA  228 (425)
T PRK05476        154 EETTTGVHRLYAMAKDGALKFPAINVNDSVTKSKFDNRYGTGESLLDGIKRAT----NVLIAGK-VVVVAGYGDVGKGCA  228 (425)
T ss_pred             ecchHHHHHHHHHHHcCCCCCCEEecCCcccCccccccHHHHhhhHHHHHHhc----cCCCCCC-EEEEECCCHHHHHHH
Confidence            3456777765 333334578999999988777654433322222221111110    0011111 000111389999999


Q ss_pred             HHHhhcCCEEEEEccc
Q psy15800         92 QRCLASIMQLVYSTCY  107 (109)
Q Consensus        92 ~~~~~fg~~V~~~~r~  107 (109)
                      ++++++|++|+++|+.
T Consensus       229 ~~lr~~Ga~ViV~d~d  244 (425)
T PRK05476        229 QRLRGLGARVIVTEVD  244 (425)
T ss_pred             HHHHhCCCEEEEEcCC
Confidence            9999999999999865

>PRK13403 ketol-acid reductoisomerase; Provisional

Probab=95.82  E-value=0.0085  Score=44.36  Aligned_cols=25  Identities=12%  Similarity=-0.010  Sum_probs=22.7

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|+||+++|++|++|||+|+++++.
T Consensus        24 ~GsIG~amA~nL~d~G~~ViV~~r~   48 (335)
T PRK13403         24 YGSQGHAQAQNLRDSGVEVVVGVRP   48 (335)
T ss_pred             EcHHHHHHHHHHHHCcCEEEEEECc
Confidence            3899999999999999999999764

>PLN02494 adenosylhomocysteinase

Probab=95.35  E-value=0.016  Score=44.81  Aligned_cols=25  Identities=4%  Similarity=-0.063  Sum_probs=22.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+.+|+++++|||+|+++++.+
T Consensus       263 G~IGr~vA~~aka~Ga~VIV~e~dp  287 (477)
T PLN02494        263 GDVGKGCAAAMKAAGARVIVTEIDP  287 (477)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            6899999999999999999997643

>PF00670 AdoHcyase_NAD: S-adenosyl-L-homocysteine hydrolase, NAD binding domain; InterPro: IPR015878 S-adenosyl-L-homocysteine hydrolase (3

Probab=94.49  E-value=0.037  Score=37.03  Aligned_cols=25  Identities=0%  Similarity=-0.160  Sum_probs=20.5

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +|.+|+.+|+.|+++|++|+.++..
T Consensus        31 YG~vG~g~A~~lr~~Ga~V~V~e~D   55 (162)
T PF00670_consen   31 YGKVGKGIARALRGLGARVTVTEID   55 (162)
T ss_dssp             -SHHHHHHHHHHHHTT-EEEEE-SS
T ss_pred             CCcccHHHHHHHhhCCCEEEEEECC
Confidence            3899999999999999999998754

3.1.1 from EC) (AdoHcyase) is an enzyme of the activated methyl cycle, responsible for the reversible hydration of S-adenosyl-L-homocysteine into adenosine and homocysteine. AdoHcyase is an ubiquitous enzyme which binds and requires NAD+ as a cofactor. AdoHcyase is a highly conserved protein [] of about 430 to 470 amino acids. This entry represents the glycine-rich region in the central part of AdoHcyase, which is thought to be involved in NAD-binding.; GO: 0004013 adenosylhomocysteinase activity; PDB: 2ZJ1_C 3DHY_B 2ZIZ_C 2ZJ0_D 3CE6_B 3GLQ_B 3D64_A 3G1U_C 1A7A_A 3NJ4_C ....

>TIGR00936 ahcY adenosylhomocysteinase

Probab=93.52  E-value=0.071  Score=40.59  Aligned_cols=24  Identities=4%  Similarity=-0.065  Sum_probs=21.8

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.||+.+|+++++||++|+++|+.
T Consensus       204 G~IG~~vA~~ak~~Ga~ViV~d~d  227 (406)
T TIGR00936       204 GWCGKGIAMRARGMGARVIVTEVD  227 (406)
T ss_pred             CHHHHHHHHHHhhCcCEEEEEeCC
Confidence            689999999999999999999643

This enzyme hydrolyzes adenosylhomocysteine as part of a cycle for the regeneration of the methyl donor S-adenosylmethionine. Species that lack this enzyme are likely to have adenosylhomocysteine nucleosidase (EC 3.2.2.9), an enzyme which also acts as 5'-methyladenosine nucleosidase (see TIGR01704).

>cd01075 NAD_bind_Leu_Phe_Val_DH NAD(P) binding domain of leucine dehydrogenase, phenylalanine dehydrogenase, and valine dehydrogenase

Probab=93.01  E-value=0.083  Score=36.25  Aligned_cols=26  Identities=8%  Similarity=0.088  Sum_probs=23.5

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|++|+.+|+.|..+|++|+++|+..
T Consensus        36 ~G~vG~~~A~~L~~~G~~Vvv~D~~~   61 (200)
T cd01075          36 LGKVGYKLAEHLLEEGAKLIVADINE   61 (200)
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            38999999999999999999999753

Amino acid dehydrogenase (DH) is a widely distributed family of enzymes that catalyzes the oxidative deamination of an amino acid to its keto acid and ammonia with concomitant reduction of NADP+. For example, leucine DH catalyzes the reversible oxidative deamination of L-leucine and several other straight or branched chain amino acids to the corresponding 2-oxoacid derivative. Amino acid DH -like NAD(P)-binding domains are members of the Rossmann fold superfamily and include glutamate, leucine, and phenylalanine DHs, methylene tetrahydrofolate DH, methylene-tetrahydromethanopterin DH, methylene-tetrahydropholate DH/cyclohydrolase, Shikimate DH-like proteins, malate oxidoreductases, and glutamyl tRNA reductase. Amino acid DHs catalyze the deamination of amino acids to keto acids with NAD(P)+ as a cofactor. The NAD(P)-binding Rossmann fold superfamily inc

>cd00401 AdoHcyase S-adenosyl-L-homocysteine hydrolase (AdoHycase) catalyzes the hydrolysis of S-adenosyl-L-homocysteine (AdoHyc) to form adenosine (Ado) and homocysteine (Hcy)

Probab=91.10  E-value=0.22  Score=38.04  Aligned_cols=24  Identities=4%  Similarity=-0.040  Sum_probs=22.2

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.||+.++++++++|++|+++|+.
T Consensus       211 G~IG~~va~~ak~~Ga~ViV~d~d  234 (413)
T cd00401         211 GDVGKGCAQSLRGQGARVIVTEVD  234 (413)
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECC
Confidence            679999999999999999999765

The equilibrium lies far on the side of AdoHyc synthesis, but in nature the removal of Ado and Hyc is sufficiently fast, so that the net reaction is in the direction of hydrolysis. Since AdoHyc is a potent inhibitor of S-adenosyl-L-methionine dependent methyltransferases, AdoHycase plays a critical role in the modulation of the activity of various methyltransferases. The enzyme forms homooligomers of 45-50kDa subunits, each binding one molecule of NAD+.

>COG0027 PurT Formate-dependent phosphoribosylglycinamide formyltransferase (GAR transformylase) [Nucleotide transport and metabolism]

Probab=89.55  E-value=0.37  Score=35.85  Aligned_cols=25  Identities=4%  Similarity=-0.015  Sum_probs=23.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |..|++++--++.+|.+|+++|||.
T Consensus        21 GELGKEvaIe~QRLG~eViAVDrY~   45 (394)
T COG0027          21 GELGKEVAIEAQRLGVEVIAVDRYA   45 (394)
T ss_pred             CccchHHHHHHHhcCCEEEEecCcC
Confidence            7899999999999999999999985

>TIGR00518 alaDH alanine dehydrogenase

Probab=87.19  E-value=0.6  Score=35.02  Aligned_cols=24  Identities=8%  Similarity=-0.141  Sum_probs=22.7

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.+|+.+++.++.+|++|.++|+.
T Consensus       176 G~vG~~aa~~a~~lGa~V~v~d~~  199 (370)
T TIGR00518       176 GVVGTNAAKMANGLGATVTILDIN  199 (370)
T ss_pred             CHHHHHHHHHHHHCCCeEEEEECC
Confidence            789999999999999999999975

The family of known L-alanine dehydrogenases includes representatives from the Proteobacteria, Firmicutes, and Cyanobacteria, all with about 50 % identity or better. An outlier to this group in both sequence and gap pattern is the homolog from Helicobacter pylori, an epsilon division Proteobacteria, which must be considered a putative alanine dehydrogenase. Related proteins include saccharopine dehydrogenase and the N-terminal half of the NAD(P) transhydrogenase alpha subunit. All of these related proteins bind NAD and/or NADP.

>TIGR02964 xanthine_xdhC xanthine dehydrogenase accessory protein XdhC

Probab=85.61  E-value=0.93  Score=32.18  Aligned_cols=25  Identities=0%  Similarity=-0.060  Sum_probs=23.1

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+++.++++++.+|++|+.+|+..
T Consensus       109 G~va~~la~la~~lGf~V~v~D~R~  133 (246)
T TIGR02964       109 GHVGRALVRALAPLPCRVTWVDSRE  133 (246)
T ss_pred             cHHHHHHHHHHhcCCCEEEEEeCCc
Confidence            7899999999999999999999764

Members of this protein family are the accessory protein XdhC for insertion of the molybdenum cofactor into the xanthine dehydrogenase large chain, XdhB, in bacteria. This protein is not part of the mature xanthine dehydrogenase. Xanthine dehydrogenase is an enzyme for purine catabolism, from other purines to xanthine to urate to further breakdown products.

>PRK05479 ketol-acid reductoisomerase; Provisional

Probab=84.01  E-value=1.1  Score=33.28  Aligned_cols=25  Identities=12%  Similarity=-0.025  Sum_probs=22.2

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|++|+++|+.|+.+|++|+++++.
T Consensus        25 ~GsmG~AlA~~L~~sG~~Vvv~~r~   49 (330)
T PRK05479         25 YGSQGHAHALNLRDSGVDVVVGLRE   49 (330)
T ss_pred             eHHHHHHHHHHHHHCCCEEEEEECC
Confidence            3899999999999999999987664

>PF03720 UDPG_MGDP_dh_C: UDP-glucose/GDP-mannose dehydrogenase family, UDP binding domain; InterPro: IPR014027 The UDP-glucose/GDP-mannose dehydrogenases are a small group of enzymes which possesses the ability to catalyse the NAD-dependent 2-fold oxidation of an alcohol to an acid without the release of an aldehyde intermediate [, ]

Probab=82.94  E-value=1.8  Score=26.44  Aligned_cols=29  Identities=3%  Similarity=-0.049  Sum_probs=21.2

Q ss_pred             hhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         80 TELITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        80 ~~l~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ..+..+-+..+++.|+..|++|.+|||+.
T Consensus        12 ~D~R~Sp~~~l~~~L~~~g~~V~~~DP~v   40 (106)
T PF03720_consen   12 DDIRESPALELIEELKERGAEVSVYDPYV   40 (106)
T ss_dssp             S--TT-HHHHHHHHHHHTT-EEEEE-TTS
T ss_pred             cccccCHHHHHHHHHHHCCCEEEEECCcc
Confidence            34556778899999999999999999975

The enzymes have a wide range of functions. In plants UDP-glucose dehydrogenase, 1.1.1.22 from EC, is an important enzyme in the synthesis of hemicellulose and pectin [], which are the components of newly formed cell walls; while in zebrafish UDP-glucose dehydrogenase is required for cardiac valve formation []. In Xanthomonas campestris, a plant pathogen, UDP-glucose dehydrogenase is required for virulence []. GDP-mannose dehydrogenase, 1.1.1.132 from EC, catalyses the formation of GDP-mannuronic acid, which is the monomeric unit from which the exopolysaccharide alginate is formed. Alginate is secreted by a number of bacteria, which include Pseudomonas aeruginosa and Azotobacter vinelandii. In P. aeruginosa, alginate is believed to play an important role in the bacteria's resistance to antibiotics and the host immune response [], while in A. vinelandii it is essential for the encystment process []. This entry represents the C-terminal substrate-binding domain of these enzymes. Structural studies indicate that this domain forms an incomplete dinucleotide binding fold [, ].; GO: 0016616 oxidoreductase activity, acting on the CH-OH group of donors, NAD or NADP as acceptor, 0051287 NAD binding, 0055114 oxidation-reduction process; PDB: 3GG2_D 1DLI_A 1DLJ_A 2Y0E_D 2Y0D_B 2Y0C_D 1MV8_B 1MUU_A 1MFZ_C 3TDK_B ....

>PLN02545 3-hydroxybutyryl-CoA dehydrogenase

Probab=82.82  E-value=1.1  Score=32.22  Aligned_cols=26  Identities=15%  Similarity=-0.032  Sum_probs=23.7

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|..+|..+...|.+|+.||+..
T Consensus        12 ~G~mG~~iA~~l~~~G~~V~~~d~~~   37 (295)
T PLN02545         12 AGQMGSGIAQLAAAAGMDVWLLDSDP   37 (295)
T ss_pred             CCHHHHHHHHHHHhcCCeEEEEeCCH
Confidence            48999999999999999999999864

>PRK14619 NAD(P)H-dependent glycerol-3-phosphate dehydrogenase; Provisional

Probab=82.69  E-value=1.5  Score=31.78  Aligned_cols=26  Identities=4%  Similarity=-0.210  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+|+.+...|.+|..|+|..
T Consensus        12 ~G~~G~~lA~~l~~~G~~V~~~~r~~   37 (308)
T PRK14619         12 AGAWGSTLAGLASANGHRVRVWSRRS   37 (308)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEeCCC
Confidence            48999999999999999999999864

>PLN02712 arogenate dehydrogenase

Probab=81.76  E-value=1.4  Score=35.66  Aligned_cols=24  Identities=0%  Similarity=-0.197  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.||+.+|+.++.+|.+|++|||.
T Consensus       378 G~mG~slA~~L~~~G~~V~~~dr~  401 (667)
T PLN02712        378 GNFGQFLAKTMVKQGHTVLAYSRS  401 (667)
T ss_pred             CHHHHHHHHHHHHCcCEEEEEECC
Confidence            789999999999999999999985

>PLN02256 arogenate dehydrogenase

Probab=80.87  E-value=1.9  Score=31.59  Aligned_cols=25  Identities=0%  Similarity=-0.129  Sum_probs=23.0

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|.+|+.+++.++..|.+|++||+.
T Consensus        44 ~G~mG~slA~~L~~~G~~V~~~d~~   68 (304)
T PLN02256         44 FGNFGQFLAKTFVKQGHTVLATSRS   68 (304)
T ss_pred             eCHHHHHHHHHHHhCCCEEEEEECc
Confidence            4899999999999999999999976

>TIGR02114 coaB_strep phosphopantothenate--cysteine ligase, streptococcal

Probab=80.21  E-value=2.1  Score=29.94  Aligned_cols=24  Identities=13%  Similarity=0.012  Sum_probs=21.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTC  106 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r  106 (109)
                      .|.||+++|+.+...|++|+..++
T Consensus        24 SGgIG~AIA~~la~~Ga~Vvlv~~   47 (227)
T TIGR02114        24 TGHLGKIITETFLSAGHEVTLVTT   47 (227)
T ss_pred             ccHHHHHHHHHHHHCCCEEEEEcC
Confidence            388999999999999999998764

In most bacteria, a single bifunctional protein catalyses phosphopantothenoylcysteine decarboxylase and phosphopantothenate--cysteine ligase activities, sequential steps in coenzyme A biosynthesis (see TIGR00521). These activities reside in separate proteins encoded by tandem genes in some bacterial lineages. This model describes proteins from the genera Streptococcus and Enterococcus homologous to the C-terminal region of TIGR00521, corresponding to phosphopantothenate--cysteine ligase activity.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	109
2gcg_A	330	Ternary Crystal Structure Of Human Glyoxylate Reduc		1e-11
2h1s_A	328	Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE RE		2e-11
1gdh_A	320	Crystal Structure Of A Nad-Dependent D-Glycerate De		5e-08
2d0i_A	333	Crystal Structure Ph0520 Protein From Pyrococcus Ho		1e-07
3ba1_A	333	Structure Of Hydroxyphenylpyruvate Reductase From C		9e-06
4g2n_A	345	Crystal Structure Of Putative D-Isomer Specific 2-H		2e-04
2ekl_A	313	Structure Of St1218 Protein From Sulfolobus Tokodai		2e-04
3kb6_A	334	Crystal Structure Of D-lactate Dehydrogenase From A		3e-04
1wwk_A	307	Crystal Structure Of Phosphoglycerate Dehydrogenase		5e-04

>pdb|2GCG|A Chain A, Ternary Crystal Structure Of Human Glyoxylate ReductaseHYDROXYPYRUVATE REDUCTASE Length = 330

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL LD+IK RGIRVG    V +D  AE  + L +   RR  +  
Sbjct: 73  AGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 132
Query: 65  NCIASG 70
             + +G
Sbjct: 133 EEVKNG 138

>pdb|2H1S|A Chain A, Crystal Structure Of A GlyoxylateHYDROXYPYRUVATE REDUCTASE FROM HOMO Sapiens Length = 328

Iteration: 1
 Score = 63.9 bits (154), Expect = 2e-11,   Method: Composition-based stats.
 Identities = 33/66 (50%), Positives = 40/66 (60%)
Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           AG NLKVIST SVG DHL LD+IK RGIRVG    V +D  AE  + L +   RR  +  
Sbjct: 71  AGANLKVISTXSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAI 130
Query: 65  NCIASG 70
             + +G
Sbjct: 131 EEVKNG 136

>pdb|1GDH|A Chain A, Crystal Structure Of A Nad-Dependent D-Glycerate Dehydrogenase At 2.4 Angstroms Resolution Length = 320

Iteration: 1
 Score = 52.8 bits (125), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 31/88 (35%), Positives = 47/88 (53%), Gaps = 2/88 (2%)
Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           R  EN+K IST+S+G DH+ LD  K+RGI+VG      + A AE  + L +  +RR  +G
Sbjct: 63  RIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEG 122
Query: 64  HNCIASGTEKSQQHAITELITQSDTNHT 91
              I + +    +    EL+ +   N T
Sbjct: 123 EKMIRTRSWPGWEP--LELVGEKLDNKT 148

>pdb|2D0I|A Chain A, Crystal Structure Ph0520 Protein From Pyrococcus Horikoshii Ot3 Length = 333

Iteration: 1
 Score = 51.6 bits (122), Expect = 1e-07,   Method: Composition-based stats.
 Identities = 28/70 (40%), Positives = 39/70 (55%)
Query: 6   GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 65
            E LKVIS  S G+D++ L++   RGI V  V  + S+AVAEF +GL I + R+      
Sbjct: 62  AERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADK 121
Query: 66  CIASGTEKSQ 75
            I  G  +S 
Sbjct: 122 FIRRGEWESH 131

>pdb|3BA1|A Chain A, Structure Of Hydroxyphenylpyruvate Reductase From Coleus Blu Length = 333

Iteration: 1
 Score = 45.1 bits (105), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 24/65 (36%), Positives = 38/65 (58%)
Query: 9   LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 68
           L+++S+FSVG D + L + + +G+RV     V +D VA+  IGL +AV RR  +    + 
Sbjct: 88  LEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVR 147
Query: 69  SGTEK 73
            G  K
Sbjct: 148 RGAWK 152

>pdb|4G2N|A Chain A, Crystal Structure Of Putative D-Isomer Specific 2-Hydroxyacid Dehydrogenase, Nad-Binding From Polaromonas Sp. Js6 66 Length = 345

Iteration: 1
 Score = 41.2 bits (95), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 24/63 (38%), Positives = 33/63 (52%)
Query: 9   LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA 68
           LK I+T SVG+DH+     +S GI+V     V SDA AE    L +   RR  +    + 
Sbjct: 95  LKTIATLSVGYDHIDXAAARSLGIKVLHTPDVLSDACAEIAXLLVLNACRRGYEADRXVR 154
Query: 69  SGT 71
           SG+
Sbjct: 155 SGS 157

>pdb|2EKL|A Chain A, Structure Of St1218 Protein From Sulfolobus Tokodaii Length = 313

Iteration: 1
 Score = 40.8 bits (94), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 21/69 (30%), Positives = 35/69 (50%)
Query: 6   GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHN 65
           G+ LK+I+   +G D++  ++ + R I+V      S+D+  E  IGL IA +R+      
Sbjct: 66  GKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMA 125
Query: 66  CIASGTEKS 74
              SG  K 
Sbjct: 126 LAKSGIFKK 134

>pdb|3KB6|A Chain A, Crystal Structure Of D-lactate Dehydrogenase From Aquifex Aeolicus Complexed With Nad And Lactic Acid Length = 334

Iteration: 1
 Score = 40.4 bits (93), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 20/54 (37%), Positives = 31/54 (57%)
Query: 9   LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
           LK+I T SVG DH+ LD  K +GI V  +   S ++VAE      + + +R ++
Sbjct: 65  LKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAXILTLVKRLKR 118

>pdb|1WWK|A Chain A, Crystal Structure Of Phosphoglycerate Dehydrogenase From Pyrococcus Horikoshii Ot3 Length = 307

Iteration: 1
 Score = 39.7 bits (91), Expect = 5e-04,   Method: Compositional matrix adjust.
 Identities = 23/75 (30%), Positives = 37/75 (49%)
Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
            LKVI+   VG D++ ++  K +GI V      SS +VAE  +GL  +V+R+       +
Sbjct: 66  KLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKM 125
Query: 68  ASGTEKSQQHAITEL 82
             G    ++    EL
Sbjct: 126 REGVWAKKEAMGIEL 140

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	109
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	3e-18
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	2e-17
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	7e-17
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	2e-16
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	3e-16
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	1e-15
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	2e-15
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	9e-15
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	2e-14
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	2e-13
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	2e-13
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	8e-13
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	3e-12
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	6e-12
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	2e-11
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	3e-11
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	6e-11
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	2e-10
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	9e-10
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	1e-08
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	7e-08
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	8e-08
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	5e-07
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	7e-07
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	9e-07
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	3e-06
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	1e-05
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	1e-05
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	2e-04
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	2e-04
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	3e-04

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A Length = 330

 Score = 76.4 bits (189), Expect = 3e-18
 Identities = 34/69 (49%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 3   SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
             AG NLKVIST SVG DHL LD+IK RGIRVG T   V +D  AE  + L +   RR  
Sbjct: 71  DAAGANLKVISTMSVGIDHLALDEIKKRGIRVGYTPD-VLTDTTAELAVSLLLTTCRRLP 129

Query: 62  QGHNCIASG 70
           +    + +G
Sbjct: 130 EAIEEVKNG 138

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1 Length = 320

 Score = 74.5 bits (184), Expect = 2e-17
 Identities = 27/69 (39%), Positives = 39/69 (56%), Gaps = 2/69 (2%)

Query: 3   SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
            R  EN+K IST+S+G DH+ LD  K+RGI+VG       + A AE  + L +  +RR  
Sbjct: 62  DRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPH-GVTVATAEIAMLLLLGSARRAG 120

Query: 62  QGHNCIASG 70
           +G   I + 
Sbjct: 121 EGEKMIRTR 129

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus} Length = 311

 Score = 72.6 bits (179), Expect = 7e-17
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             + LKVI+ +SVG DH+ L+  + RGIRV     V ++A A+  + L +AV+RR  +G 
Sbjct: 62  RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGA 121

Query: 65  NCIASG 70
                G
Sbjct: 122 AYARDG 127

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP} Length = 345

 Score = 71.5 bits (176), Expect = 2e-16
 Identities = 25/69 (36%), Positives = 36/69 (52%), Gaps = 2/69 (2%)

Query: 3   SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVG-TVGPVSSDAVAEFNIGLAIAVSRRFQ 61
            +    LK I+T SVG+DH+ +   +S GI+V  T   V SDA AE  + L +   RR  
Sbjct: 89  RKLQPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPD-VLSDACAEIAMLLVLNACRRGY 147

Query: 62  QGHNCIASG 70
           +    + SG
Sbjct: 148 EADRMVRSG 156

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A* Length = 334

 Score = 71.1 bits (175), Expect = 3e-16
 Identities = 18/66 (27%), Positives = 36/66 (54%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
               L++++ ++VG+D++ +++   RGI V     V +DA A+    L +A +R   +G 
Sbjct: 64  NAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGD 123

Query: 65  NCIASG 70
             + SG
Sbjct: 124 RFVRSG 129

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B Length = 348

 Score = 70.0 bits (172), Expect = 1e-15
 Identities = 16/72 (22%), Positives = 28/72 (38%)

Query: 3   SRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
           S    +LKV +    G D L LD +  RG+           A ++  + L ++V R    
Sbjct: 75  SHLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASY 134

Query: 63  GHNCIASGTEKS 74
                 +G  ++
Sbjct: 135 SERAARTGDPET 146

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A* Length = 330

 Score = 68.8 bits (169), Expect = 2e-15
 Identities = 19/66 (28%), Positives = 31/66 (46%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   L+VI     G D+  +D   +RG+ +  V  + +   AE  IGLA+ + R  +   
Sbjct: 64  ACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAAD 123

Query: 65  NCIASG 70
             + SG
Sbjct: 124 AFVRSG 129

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A* Length = 333

 Score = 67.3 bits (165), Expect = 9e-15
 Identities = 24/66 (36%), Positives = 38/66 (57%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   L+++S+FSVG D + L + + +G+RV     V +D VA+  IGL +AV RR  +  
Sbjct: 84  ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECD 143

Query: 65  NCIASG 70
             +  G
Sbjct: 144 KYVRRG 149

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti} Length = 340

 Score = 66.1 bits (162), Expect = 2e-14
 Identities = 22/66 (33%), Positives = 32/66 (48%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
              +L +I+   VG D + L + + R I V T   V +D VA+  I L +AV RR   G 
Sbjct: 90  KLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGD 149

Query: 65  NCIASG 70
             +  G
Sbjct: 150 RLVREG 155

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1 Length = 303

 Score = 63.0 bits (154), Expect = 2e-13
 Identities = 20/67 (29%), Positives = 29/67 (43%), Gaps = 1/67 (1%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
                LK I   + G DHL  + I    + V      ++DAVAEF + L +A  +R  Q 
Sbjct: 46  AKMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNADAVAEFALALLLAPYKRIIQY 104

Query: 64  HNCIASG 70
              +  G
Sbjct: 105 GEKMKRG 111

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A Length = 393

 Score = 63.5 bits (155), Expect = 2e-13
 Identities = 18/66 (27%), Positives = 31/66 (46%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             +NLK+  T  +G DH+ L     R + V  V   +S +VAE  + + +++ R +   H
Sbjct: 110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSH 169

Query: 65  NCIASG 70
                G
Sbjct: 170 EWARKG 175

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum} Length = 290

 Score = 59.9 bits (146), Expect = 3e-12
 Identities = 15/66 (22%), Positives = 29/66 (43%), Gaps = 1/66 (1%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
            G+  K+I   S G DH+ ++ I    +         S +VAE    L +A ++   + +
Sbjct: 46  LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENN 104

Query: 65  NCIASG 70
             + +G
Sbjct: 105 ELMKAG 110

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii} Length = 333

 Score = 59.1 bits (144), Expect = 6e-12
 Identities = 27/66 (40%), Positives = 37/66 (56%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             E LKVIS  S G+D++ L++   RGI V  V  + S+AVAEF +GL I + R+     
Sbjct: 61  NAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYAD 120

Query: 65  NCIASG 70
             I  G
Sbjct: 121 KFIRRG 126

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum} Length = 324

 Score = 58.1 bits (141), Expect = 2e-11
 Identities = 16/79 (20%), Positives = 33/79 (41%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
           R    LK +   S G D+L L  +++ G+ V     + +DA++E  +   ++V R +   
Sbjct: 57  RPTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAA 116

Query: 64  HNCIASGTEKSQQHAITEL 82
                   + +     + L
Sbjct: 117 WLNQRGARQWALPMTTSTL 135

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A* Length = 333

 Score = 57.2 bits (139), Expect = 3e-11
 Identities = 15/66 (22%), Positives = 30/66 (45%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   +  +S  +VG D++ + + K  G ++  V   S +A+AE     A  + R+ +   
Sbjct: 67  ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMD 126

Query: 65  NCIASG 70
             +A  
Sbjct: 127 EKVARH 132

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1 Length = 333

 Score = 56.5 bits (137), Expect = 6e-11
 Identities = 16/66 (24%), Positives = 32/66 (48%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
               +K ++  +VG D++ +  +K  GIR+  V   S  A+AEF +   + + R   +  
Sbjct: 65  HAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQ 124

Query: 65  NCIASG 70
             + +G
Sbjct: 125 AQLQAG 130

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A Length = 351

 Score = 55.0 bits (133), Expect = 2e-10
 Identities = 19/66 (28%), Positives = 33/66 (50%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             +NLK++ T  +G DH+ L    + G+ V  V   +  +VAE  +   + + R F  G+
Sbjct: 83  KAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGY 142

Query: 65  NCIASG 70
           N +  G
Sbjct: 143 NQVVKG 148

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans} Length = 331

 Score = 53.0 bits (128), Expect = 9e-10
 Identities = 16/63 (25%), Positives = 27/63 (42%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCI 67
            +K I T + G DH+  +  K  G  +  V   S +A+AE  +  A+ + R      +  
Sbjct: 69  GVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRT 128

Query: 68  ASG 70
           A  
Sbjct: 129 AKK 131

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A Length = 364

 Score = 50.0 bits (120), Expect = 1e-08
 Identities = 20/68 (29%), Positives = 30/68 (44%), Gaps = 2/68 (2%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRG--IRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
             + LK++    VG DH+ LD I   G  I V  V   +  +VAE  +   + + R F  
Sbjct: 81  KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVP 140

Query: 63  GHNCIASG 70
            H  I + 
Sbjct: 141 AHEQIINH 148

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A* Length = 347

 Score = 48.0 bits (115), Expect = 7e-08
 Identities = 14/66 (21%), Positives = 26/66 (39%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
             + L++I     G D++ +      GI V  V   S +  A+  +   + + RR    H
Sbjct: 82  KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLH 141

Query: 65  NCIASG 70
             +  G
Sbjct: 142 QALREG 147

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii} Length = 307

 Score = 47.5 bits (114), Expect = 8e-08
 Identities = 21/66 (31%), Positives = 34/66 (51%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           +   LKVI+   VG D++ ++  K +GI V      SS +VAE  +GL  +V+R+     
Sbjct: 63  SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFAD 122

Query: 65  NCIASG 70
             +  G
Sbjct: 123 RKMREG 128

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum} Length = 352

 Score = 45.3 bits (108), Expect = 5e-07
 Identities = 19/70 (27%), Positives = 26/70 (37%), Gaps = 5/70 (7%)

Query: 5   AGENLKVISTFSV----GHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
               LK+IS           H+ L+    +G+ V   G  S  A AE    L +A  RR 
Sbjct: 68  RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVV-LEGKGSPVAPAELTWALVMAAQRRI 126

Query: 61  QQGHNCIASG 70
            Q    +  G
Sbjct: 127 PQYVASLKHG 136

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii} Length = 313

 Score = 44.9 bits (107), Expect = 7e-07
 Identities = 20/66 (30%), Positives = 34/66 (51%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
            G+ LK+I+   +G D++  ++ + R I+V      S+D+  E  IGL IA +R+     
Sbjct: 65  KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSM 124

Query: 65  NCIASG 70
               SG
Sbjct: 125 ALAKSG 130

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp} Length = 381

 Score = 44.6 bits (106), Expect = 9e-07
 Identities = 12/55 (21%), Positives = 24/55 (43%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
           +G  +  + T + G DH+    +K  GI        ++ AV E+     + ++ R
Sbjct: 58  SGTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAER 112

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa} Length = 380

 Score = 43.1 bits (102), Expect = 3e-06
 Identities = 14/55 (25%), Positives = 28/55 (50%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
           AG  ++ + T ++G DHL LD     GI   +    ++  V ++ +G  +A++  
Sbjct: 55  AGSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEV 109

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens} Length = 335

 Score = 41.4 bits (98), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A E L+V+     G D++ L+    +GI V      +S + AE   G+ + ++R+  Q  
Sbjct: 86  AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQAT 145

Query: 65  NCIASGT-EKSQ 75
             +  G  E+ +
Sbjct: 146 ASMKDGKWERKK 157

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A* Length = 529

 Score = 41.5 bits (98), Expect = 1e-05
 Identities = 18/72 (25%), Positives = 34/72 (47%), Gaps = 1/72 (1%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
           A   LK+++   VG D++ +D   +RG+ V      +  + AE  + L +A SR+     
Sbjct: 63  AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAAD 122

Query: 65  NCIASGT-EKSQ 75
             +   T ++S 
Sbjct: 123 ASLREHTWKRSS 134

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp} Length = 324

 Score = 37.7 bits (88), Expect = 2e-04
 Identities = 11/59 (18%), Positives = 22/59 (37%), Gaps = 1/59 (1%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQ 62
                L    +   G D L LD    R  ++  V  +    ++E+  G  +++ R+   
Sbjct: 63  AKANKLSWFQSTYAGVDVL-LDARCRRDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPL 120

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus} Length = 416

 Score = 37.6 bits (88), Expect = 2e-04
 Identities = 24/73 (32%), Positives = 33/73 (45%), Gaps = 5/73 (6%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVS-SDAVAEFNIGLAIAVSRRFQQ 62
           A   L  +  FSVG + + L   + RGI V     P S + +VAE  IG  I + RR   
Sbjct: 77  AANRLIAVGCFSVGTNQVELKAARKRGIPV--FNAPFSNTRSVAELVIGEIIMLMRRIFP 134

Query: 63  GHNCIASGT-EKS 74
                 +G  EK+
Sbjct: 135 RSVSAHAGGWEKT 147

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A* Length = 404

 Score = 37.6 bits (88), Expect = 3e-04
 Identities = 22/74 (29%), Positives = 32/74 (43%), Gaps = 5/74 (6%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTV-GPVS-SDAVAEFNIGLAIAVSRRFQQ 62
           A E L  I  F++G + + LD    RGI V     P S + +VAE  IG  + + R   +
Sbjct: 66  AAEKLVAIGAFAIGTNQVDLDAAAKRGIPV--FNAPFSNTRSVAELVIGELLLLLRGVPE 123

Query: 63  GHNCIASGT-EKSQ 75
            +     G   K  
Sbjct: 124 ANAKAHRGVGNKLA 137

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	109
2pi1_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.97
3kb6_A	334	D-lactate dehydrogenase; oxidoreductase, D-LDH, NA	99.97
4g2n_A	345	D-isomer specific 2-hydroxyacid dehydrogenase, Na;	99.96
4dgs_A	340	Dehydrogenase; structural genomics, PSI-biology, N	99.96
1sc6_A	404	PGDH, D-3-phosphoglycerate dehydrogenase; alloster	99.96
4e5n_A	330	Thermostable phosphite dehydrogenase; D-2-hydroxya	99.96
2g76_A	335	3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidor	99.96
3evt_A	324	Phosphoglycerate dehydrogenase; structural genomic	99.96
3k5p_A	416	D-3-phosphoglycerate dehydrogenase; niaid, ssgcid,	99.96
1wwk_A	307	Phosphoglycerate dehydrogenase; riken structural g	99.96
2cuk_A	311	Glycerate dehydrogenase/glyoxylate reductase; stru	99.95
3jtm_A	351	Formate dehydrogenase, mitochondrial; mitochondrio	99.95
2ekl_A	313	D-3-phosphoglycerate dehydrogenase; structural gen	99.95
1j4a_A	333	D-LDH, D-lactate dehydrogenase; NAD-dependent dehy	99.95
3hg7_A	324	D-isomer specific 2-hydroxyacid dehydrogenase FAM	99.95
3ba1_A	333	HPPR, hydroxyphenylpyruvate reductase; two domain	99.95
1dxy_A	333	D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxyc	99.95
1gdh_A	320	D-glycerate dehydrogenase; oxidoreductase(CHOH (D)	99.95
3gg9_A	352	D-3-phosphoglycerate dehydrogenase oxidoreductase;	99.95
1xdw_A	331	NAD+-dependent (R)-2-hydroxyglutarate dehydrogenas	99.95
2yq5_A	343	D-isomer specific 2-hydroxyacid dehydrogenase; oxi	99.95
2nac_A	393	NAD-dependent formate dehydrogenase; oxidoreductas	99.95
1mx3_A	347	CTBP1, C-terminal binding protein 1; nuclear prote	99.95
4hy3_A	365	Phosphoglycerate oxidoreductase; PSI-biology, stru	99.95
1ygy_A	529	PGDH, D-3-phosphoglycerate dehydrogenase; oxidored	99.94
2j6i_A	364	Formate dehydrogenase; oxidoreductase, D-specific-	99.94
2d0i_A	333	Dehydrogenase; structural genomics, NPPSFA, nation	99.94
2dbq_A	334	Glyoxylate reductase; D-3-phosphoglycerate dehydro	99.94
2gcg_A	330	Glyoxylate reductase/hydroxypyruvate reductase; NA	99.94
1qp8_A	303	Formate dehydrogenase; oxidoreductase; HET: NDP; 2	99.94
2w2k_A	348	D-mandelate dehydrogenase; 2-hydroxyacid dehydroge	99.94
3pp8_A	315	Glyoxylate/hydroxypyruvate reductase A; structural	99.93
3gvx_A	290	Glycerate dehydrogenase related protein; NYSGXRC,	99.93
3oet_A	381	Erythronate-4-phosphate dehydrogenase; structural	99.87
2o4c_A	380	Erythronate-4-phosphate dehydrogenase; erythronate	99.87
3d4o_A	293	Dipicolinate synthase subunit A; NP_243269.1, stru	99.61
1v8b_A	479	Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2	99.34
3d64_A	494	Adenosylhomocysteinase; structural genomics, ssgci	99.3
2rir_A	300	Dipicolinate synthase, A chain; structural genomic	99.25
2vhw_A	377	Alanine dehydrogenase; NAD, secreted, oxidoreducta	98.61
1x13_A	401	NAD(P) transhydrogenase subunit alpha; NAD(H)-bind	98.59
3ce6_A	494	Adenosylhomocysteinase; protein-substrate complex,	98.56
1gpj_A	404	Glutamyl-tRNA reductase; tRNA-dependent tetrapyrro	98.19
1l7d_A	384	Nicotinamide nucleotide transhydrogenase, subunit	98.17
2eez_A	369	Alanine dehydrogenase; TTHA0216, structural genomi	97.81
3h9u_A	436	Adenosylhomocysteinase; NAD CO-factor complex, str	97.71
3n58_A	464	Adenosylhomocysteinase; ssgcid, hydrolase, structu	96.96
3gvp_A	435	Adenosylhomocysteinase 3; protein CO-factor comple	96.03
3ond_A	488	Adenosylhomocysteinase; plant protein, enzyme-subs	95.63
1gtm_A	419	Glutamate dehydrogenase; oxidoreductase, NAD, NADP	95.37
1c1d_A	355	L-phenylalanine dehydrogenase; amino acid dehydrog	95.03
2pv7_A	298	T-protein [includes: chorismate mutase (EC 5.4.99	94.14
3p2y_A	381	Alanine dehydrogenase/pyridine nucleotide transhy;	92.99
4dio_A	405	NAD(P) transhydrogenase subunit alpha PART 1; stru	92.41
3dtt_A	245	NADP oxidoreductase; structural genomics, joint ce	92.3
1leh_A	364	Leucine dehydrogenase; oxidoreductase; 2.20A {Lysi	91.75
3fwz_A	140	Inner membrane protein YBAL; TRKA-N domain, E.coli	91.14
2g1u_A	155	Hypothetical protein TM1088A; structural genomics,	90.67
3llv_A	141	Exopolyphosphatase-related protein; NAD(P)-binding	90.55
3qsg_A	312	NAD-binding phosphogluconate dehydrogenase-like P;	89.42
2raf_A	209	Putative dinucleotide-binding oxidoreductase; NP_7	89.05
3ic5_A	118	Putative saccharopine dehydrogenase; structural ge	88.34
3qha_A	296	Putative oxidoreductase; seattle structural genomi	88.15
3h9e_O	346	Glyceraldehyde-3-phosphate dehydrogenase, testis-;	87.72
1lss_A	140	TRK system potassium uptake protein TRKA homolog;	87.63
3ktd_A	341	Prephenate dehydrogenase; structural genomics, joi	87.59
3doj_A	310	AT3G25530, dehydrogenase-like protein; gamma-hydro	87.46
2hmt_A	144	YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane	87.42
3k6j_A	460	Protein F01G10.3, confirmed by transcript evidenc;	87.36
2yjz_A	201	Metalloreductase steap4; oxidoreductase, metabolic	87.23
3c85_A	183	Putative glutathione-regulated potassium-efflux S	87.19
4e12_A	283	Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1	86.62
3q2o_A	389	Phosphoribosylaminoimidazole carboxylase, ATPase;	86.6
1np3_A	338	Ketol-acid reductoisomerase; A DEEP figure-OF-eigh	86.56
4dll_A	320	2-hydroxy-3-oxopropionate reductase; structural ge	86.53
4ezb_A	317	Uncharacterized conserved protein; structural geno	86.5
1pjc_A	361	Protein (L-alanine dehydrogenase); oxidoreductase,	85.72
2h78_A	302	Hibadh, 3-hydroxyisobutyrate dehydrogenase; APC601	85.65
3l6d_A	306	Putative oxidoreductase; structural genomics, prot	85.49
3ggo_A	314	Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-b	85.08
3g0o_A	303	3-hydroxyisobutyrate dehydrogenase; NAD(P), valine	85.06
4gbj_A	297	6-phosphogluconate dehydrogenase NAD-binding; stru	84.61
3c24_A	286	Putative oxidoreductase; YP_511008.1, structural g	84.45
1id1_A	153	Putative potassium channel protein; RCK domain, E.	84.38
2vns_A	215	Metalloreductase steap3; metal-binding, transmembr	83.85
3oj0_A	144	Glutr, glutamyl-tRNA reductase; structural genomic	83.42
3e8x_A	236	Putative NAD-dependent epimerase/dehydratase; stru	82.85
1dhr_A	241	Dihydropteridine reductase; oxidoreductase(acting	82.77
2uyy_A	316	N-PAC protein; long-chain dehydrogenase, cytokine;	82.74
3cky_A	301	2-hydroxymethyl glutarate dehydrogenase; rossmann	82.73
1ooe_A	236	Dihydropteridine reductase; structural genomics, P	82.7
3orf_A	251	Dihydropteridine reductase; alpha-beta-alpha sandw	82.64
1hdo_A	206	Biliverdin IX beta reductase; foetal metabolism, H	82.2
4e21_A	358	6-phosphogluconate dehydrogenase (decarboxylating;	81.99
1vpd_A	299	Tartronate semialdehyde reductase; structural geno	81.6
3orq_A	377	N5-carboxyaminoimidazole ribonucleotide synthetas;	81.59
3h7a_A	252	Short chain dehydrogenase; oxidoreductase, PSI-2,	81.18
3tpc_A	257	Short chain alcohol dehydrogenase-related dehydro;	80.87
2d5c_A	263	AROE, shikimate 5-dehydrogenase; substrate, dimer,	80.85
4fs3_A	256	Enoyl-[acyl-carrier-protein] reductase [NADPH] FA;	80.31
2o23_A	265	HADH2 protein; HSD17B10, schad, ERAB, type II HADH	80.18
1uzm_A	247	3-oxoacyl-[acyl-carrier protein] reductase; beta-k	80.18
1uay_A	242	Type II 3-hydroxyacyl-COA dehydrogenase; beta oxid	80.17
2we8_A	386	Xanthine dehydrogenase; oxidoreductase; 2.30A {Myc	80.08
3d7l_A	202	LIN1944 protein; APC89317, structural genomics, PS	80.03

>3kb6_A D-lactate dehydrogenase; oxidoreductase, D-LDH, NAD, structural genomics, NPPSFA, NAT project on protein structural and functional analyses; HET: MSE NAD 1PE; 2.12A {Aquifex aeolicus}

Probab=99.97  E-value=2.9e-30  Score=187.69  Aligned_cols=106  Identities=25%  Similarity=0.281  Sum_probs=95.6

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc-hhh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH-AIT   80 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~-~~~   80 (109)
                      |+ .+|+||+|++.++|+||||++++.++||.|+|+||+++++||||+++++|++.|++..+.+.++++.|..+.. .+.
T Consensus        59 l~-~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~r~~~~~~~~~~~~~~~~~~~~~~~  137 (334)
T 3kb6_A           59 LS-KMPRLKLIHTRSVGFDHIDLDYCKKKGILVTHIPAYSPESVAEHTFAMILTLVKRLKRIEDRVKKLNFSQDSEILAR  137 (334)
T ss_dssp             HH-TCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCGGGCBC
T ss_pred             Hh-cCCCCcEEEECCcccchhcHHHHHHCCCEEEECCCcCcHHHHHHHHHHHHHHhhccccccccccccccccccccccc
Confidence            45 6899999999999999999999999999999999999999999999999999999999999999999865432 223


Q ss_pred             hhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         81 ELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        81 ~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ++.         |+||+++|+++++|||+|++|||+.
T Consensus       138 ~l~g~tvGIiG~G~IG~~va~~~~~fg~~v~~~d~~~  174 (334)
T 3kb6_A          138 ELNRLTLGVIGTGRIGSRVAMYGLAFGMKVLCYDVVK  174 (334)
T ss_dssp             CGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             eecCcEEEEECcchHHHHHHHhhcccCceeeecCCcc
Confidence            332         7899999999999999999999875

>4g2n_A D-isomer specific 2-hydroxyacid dehydrogenase, Na; structural genomics, protein structure initiative, nysgrc, P biology; 1.70A {Polaromonas SP}

Probab=99.96  E-value=8.3e-30  Score=185.94  Aligned_cols=103  Identities=26%  Similarity=0.262  Sum_probs=93.8

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hhhhh
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AITEL   82 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~l   82 (109)
                      .|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|..+.+   .+.++
T Consensus        92 ~~~Lk~I~~~~~G~D~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~r~g~W~~~~~~~~~g~~l  171 (345)
T 4g2n_A           92 QPGLKTIATLSVGYDHIDMAAARSLGIKVLHTPDVLSDACAEIAMLLVLNACRRGYEADRMVRSGSWPGWGPTQLLGMGL  171 (345)
T ss_dssp             TTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSCCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCTTTTCBCCC
T ss_pred             cCCceEEEEcCCcccccCHHHHHhCCEEEEECCcccchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCccccccccc
Confidence            479999999999999999999999999999999999999999999999999999999999999999975431   23333


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       172 ~gktvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  206 (345)
T 4g2n_A          172 TGRRLGIFGMGRIGRAIATRARGFGLAIHYHNRTR  206 (345)
T ss_dssp             TTCEEEEESCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CCCEEEEEEeChhHHHHHHHHHHCCCEEEEECCCC
Confidence            2         7899999999999999999999974

>4dgs_A Dehydrogenase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.50A {Sinorhizobium meliloti}

Probab=99.96  E-value=6.9e-30  Score=186.05  Aligned_cols=106  Identities=25%  Similarity=0.244  Sum_probs=93.9

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcc--cchh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQ--QHAI   79 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~--~~~~   79 (109)
                      |+ .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|...  .+.+
T Consensus        88 l~-~~p~Lk~I~~~g~G~d~id~~~a~~~gI~V~n~pg~~~~~vAE~a~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~  166 (340)
T 4dgs_A           88 ME-KLPSLGIIAINGVGTDKVDLARARRRNIDVTTTPGVLADDVADLGIALMLAVLRRVGDGDRLVREGRWAAGEQLPLG  166 (340)
T ss_dssp             HH-HCSSCCEEEEESSCCTTBCHHHHHHTTCEEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCC------CCC
T ss_pred             Hh-hCCCCEEEEECCCCccccCHHHHHhCCEEEEECCCCCcchHHHHHHHHHHHHHhChHHHHHHHhcCCcccccCcCcc
Confidence            44 58999999999999999999999999999999999999999999999999999999999999999999754  1223


Q ss_pred             hhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         80 TELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        80 ~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .++.         |+||+.+|+++++|||+|++|||+.
T Consensus       167 ~~l~gktiGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  204 (340)
T 4dgs_A          167 HSPKGKRIGVLGLGQIGRALASRAEAFGMSVRYWNRST  204 (340)
T ss_dssp             CCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             ccccCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            3333         7899999999999999999999975

>1sc6_A PGDH, D-3-phosphoglycerate dehydrogenase; allosteric regulation phosphoglycerate dehydrogenase PGDH, oxidoreductase; HET: NAD; 2.09A {Escherichia coli} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 PDB: 1psd_A* 1yba_A* 2p9c_A* 2p9e_A* 2pa3_A* 2p9g_A*

Probab=99.96  E-value=6.6e-30  Score=189.73  Aligned_cols=104  Identities=22%  Similarity=0.220  Sum_probs=93.0

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||+|++.++|+|+||++++.++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|+|.+....+.++. 
T Consensus        66 ~~~~Lk~I~~~~~G~d~iD~~~a~~~GI~V~n~p~~n~~~vAE~~~~~~L~~~R~i~~~~~~~~~g~W~~~~~~~~el~g  145 (404)
T 1sc6_A           66 AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSNTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARG  145 (404)
T ss_dssp             HCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTT
T ss_pred             hCCCCcEEEECCcccCccCHHHHHhCCCEEEecCcccHHHHHHHHHHHHHHHHhChHHHHHHHHcCCccccCCCccccCC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999965432233333 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |+||+.+|+++++|||+|++|||+.
T Consensus       146 ktlGiIGlG~IG~~vA~~l~~~G~~V~~~d~~~  178 (404)
T 1sc6_A          146 KKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN  178 (404)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEEcCCc
Confidence                    7899999999999999999999864

>4e5n_A Thermostable phosphite dehydrogenase; D-2-hydroxyacid dehydrogenase, oxidoreductase; HET: NAD; 1.70A {Pseudomonas stutzeri} PDB: 4e5k_A* 4ebf_A* 4e5p_A* 4e5m_A*

Probab=99.96  E-value=1.4e-29  Score=183.78  Aligned_cols=104  Identities=24%  Similarity=0.264  Sum_probs=94.7

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc--hhhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH--AITEL   82 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~--~~~~l   82 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|..+.+  .+.++
T Consensus        64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l  143 (330)
T 4e5n_A           64 ACPELRVIGCALKGFDNFDVDACTARGVWLTFVPDLLTVPTAELAIGLAVGLGRHLRAADAFVRSGKFRGWQPRFYGTGL  143 (330)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCSCCCCCCS
T ss_pred             hCCCCcEEEECCCcccccCHHHHHhcCcEEEeCCCCCchHHHHHHHHHHHHHHhChHHHHHHHHhCCccccCccccCCcc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999975432  22333


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       144 ~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  178 (330)
T 4e5n_A          144 DNATVGFLGMGAIGLAMADRLQGWGATLQYHEAKA  178 (330)
T ss_dssp             TTCEEEEECCSHHHHHHHHHTTTSCCEEEEECSSC
T ss_pred             CCCEEEEEeeCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            2         7899999999999999999999975

>2g76_A 3-PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, phosphoglycerate dehydrogenase deficiency, S metabolism, 2-hydroxyacid dehydrogenases; HET: NAD; 1.70A {Homo sapiens}

Probab=99.96  E-value=1.8e-29  Score=183.62  Aligned_cols=104  Identities=21%  Similarity=0.238  Sum_probs=94.1

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|......+.++. 
T Consensus        86 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~l~g  165 (335)
T 2g76_A           86 AAEKLQVVGRAGTGVDNVDLEAATRKGILVMNTPNGNSLSAAELTCGMIMCLARQIPQATASMKDGKWERKKFMGTELNG  165 (335)
T ss_dssp             HCSSCCEEEESSSSCTTBCHHHHHHHTCEEECCSSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCTGGGCBCCCTT
T ss_pred             hCCCCcEEEECCCCcchhChHHHHhCCeEEEECCCccchHHHHHHHHHHHHHHhchHHHHHHHHcCCCCccCCCCcCCCc
Confidence            5799999999999999999999999999999999999999999999999999999999999999999964322222332 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |.||+.+|+++++|||+|++|||+.
T Consensus       166 ~tvgIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  198 (335)
T 2g76_A          166 KTLGILGLGRIGREVATRMQSFGMKTIGYDPII  198 (335)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             CEEEEEeECHHHHHHHHHHHHCCCEEEEECCCc
Confidence                    7899999999999999999999875

>3evt_A Phosphoglycerate dehydrogenase; structural genomics, PSI-2, protein structure initiative; 2.20A {Lactobacillus plantarum}

Probab=99.96  E-value=1.6e-29  Score=183.08  Aligned_cols=103  Identities=18%  Similarity=0.232  Sum_probs=94.1

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHh-HHHHHcCCCCcccchhhhhc
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG-HNCIASGTEKSQQHAITELI   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~-~~~~~~g~w~~~~~~~~~l~   83 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+ .+.++++.|.... .+.++.
T Consensus        58 ~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~~W~~~~-~~~~l~  136 (324)
T 3evt_A           58 PTNQLKFVQVISAGVDYLPLKALQAAGVVVANTSGIHADAISESVLAAMLSVVRGYHAAWLNQRGARQWALPM-TTSTLT  136 (324)
T ss_dssp             TTCCCCEEECSSSCCTTSCHHHHHHTTCEEECCTTHHHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCSSCSS-CCCCST
T ss_pred             hCCCceEEEECCccccccCHHHHHHCCcEEEECCCcCchHHHHHHHHHHHHHHhChhHHHHHHHhcCCcccCC-CCcccc
Confidence            68999999999999999999999999999999999999999999999999999999999 9999999997543 223332


Q ss_pred             ---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 ---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 ---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                               |.||+.+|+++++|||+|++|||+.
T Consensus       137 gktvGIiGlG~IG~~vA~~l~~~G~~V~~~dr~~  170 (324)
T 3evt_A          137 GQQLLIYGTGQIGQSLAAKASALGMHVIGVNTTG  170 (324)
T ss_dssp             TCEEEEECCSHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CCeEEEECcCHHHHHHHHHHHhCCCEEEEECCCc
Confidence                     7899999999999999999999875

>3k5p_A D-3-phosphoglycerate dehydrogenase; niaid, ssgcid, seattle structural genomics center for infect disease, brucellosis; 2.15A {Brucella melitensis biovar abortus}

Probab=99.96  E-value=2.7e-29  Score=186.79  Aligned_cols=104  Identities=22%  Similarity=0.235  Sum_probs=95.3

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||+|++.++|+|+||++++.++||.|+|+|++++++||||+++++|++.|+++.+++.+++|+|.+....+.++. 
T Consensus        77 ~~p~Lk~I~~~~~G~d~IDl~~a~~~GI~V~n~p~~n~~aVAE~~l~l~L~l~R~i~~~~~~~~~g~W~~~~~~~~el~g  156 (416)
T 3k5p_A           77 AANRLIAVGCFSVGTNQVELKAARKRGIPVFNAPFSNTRSVAELVIGEIIMLMRRIFPRSVSAHAGGWEKTAIGSREVRG  156 (416)
T ss_dssp             HCTTCCEEEECSSCCTTBCHHHHHHTTCCEECCSSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTCCCSTT
T ss_pred             hCCCcEEEEECccccCccCHHHHHhcCcEEEeCCCcccHHHHHHHHHHHHHHhcccHHHHHhhhcccccccCCCCccCCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999976543333443 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |+||+.+|+++++|||+|++|||+.
T Consensus       157 ktvGIIGlG~IG~~vA~~l~~~G~~V~~yd~~~  189 (416)
T 3k5p_A          157 KTLGIVGYGNIGSQVGNLAESLGMTVRYYDTSD  189 (416)
T ss_dssp             CEEEEECCSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CEEEEEeeCHHHHHHHHHHHHCCCEEEEECCcc
Confidence                    7899999999999999999999864

>1wwk_A Phosphoglycerate dehydrogenase; riken structural genomics/proteomics initiative, RSGI, structural genomics, oxidoreductase; HET: NAD; 1.90A {Pyrococcus horikoshii}

Probab=99.96  E-value=3e-29  Score=180.51  Aligned_cols=106  Identities=25%  Similarity=0.317  Sum_probs=94.9

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      |+ .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|......+.+
T Consensus        61 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~  139 (307)
T 1wwk_A           61 IE-SAPKLKVIARAGVGLDNIDVEAAKEKGIEVVNAPAASSRSVAELAVGLMFSVARKIAFADRKMREGVWAKKEAMGIE  139 (307)
T ss_dssp             HT-TCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCGGGGHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCTTTCCBCC
T ss_pred             Hh-hCCCCeEEEECCccccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccCcCCcc
Confidence            44 68999999999999999999999999999999999999999999999999999999999999999999642112223


Q ss_pred             h---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +         .|+||+.+|+++++|||+|++|||+.
T Consensus       140 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (307)
T 1wwk_A          140 LEGKTIGIIGFGRIGYQVAKIANALGMNILLYDPYP  175 (307)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cCCceEEEEccCHHHHHHHHHHHHCCCEEEEECCCC
Confidence            3         27899999999999999999999875

>2cuk_A Glycerate dehydrogenase/glyoxylate reductase; structural genomics, riken structur genomics/proteomics initiative, RSGI, NPPSFA; HET: NHE; 2.00A {Thermus thermophilus}

Probab=99.95  E-value=9.3e-29  Score=178.23  Aligned_cols=104  Identities=32%  Similarity=0.448  Sum_probs=93.7

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AITE   81 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~   81 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|..+.+   .+.+
T Consensus        62 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~~  141 (311)
T 2cuk_A           62 RAKGLKVIACYSVGVDHVDLEAARERGIRVTHTPGVLTEATADLTLALLLAVARRVVEGAAYARDGLWKAWHPELLLGLD  141 (311)
T ss_dssp             HSTTCCEEECSSSCCTTBCHHHHHTTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCC
T ss_pred             hCCCCeEEEECCcCccccCHHHHHhCCcEEEECCCCChHHHHHHHHHHHHHHHcChHHHHHHHHcCCCCccccccccCcC
Confidence            5799999999999999999999999999999999999999999999999999999999999999999963211   1222


Q ss_pred             h---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +         .|+||+.+|+++++|||+|++|||+.
T Consensus       142 l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  177 (311)
T 2cuk_A          142 LQGLTLGLVGMGRIGQAVAKRALAFGMRVVYHARTP  177 (311)
T ss_dssp             CTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEEEECHHHHHHHHHHHHCCCEEEEECCCC
Confidence            2         27899999999999999999999875

>3jtm_A Formate dehydrogenase, mitochondrial; mitochondrion, NAD, oxidoreductase, T peptide; 1.30A {Arabidopsis thaliana} PDB: 3n7u_A* 3naq_A

Probab=99.95  E-value=8.2e-29  Score=181.05  Aligned_cols=104  Identities=23%  Similarity=0.251  Sum_probs=93.7

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL   82 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l   82 (109)
                      .+|+||+|++.++|+|+||++++.++||.|+|+||+++.+||||+++++|++.|++..+++.+++|+|....  ..+.++
T Consensus        83 ~~p~Lk~i~~~g~G~d~id~~~a~~~gI~V~n~~g~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l  162 (351)
T 3jtm_A           83 KAKNLKLLLTAGIGSDHIDLQAAAAAGLTVAEVTGSNVVSVAEDELMRILILMRNFVPGYNQVVKGEWNVAGIAYRAYDL  162 (351)
T ss_dssp             HCSSCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCHHHHHTTCCCS
T ss_pred             hCCCCeEEEEeCeeecccCHHHHHhcCeeEEECCCcCchHHHHHHHHHHHHHhhCcHHHHHHHHcCCCccccccCCcccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999996431  112233


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       163 ~gktvGIIG~G~IG~~vA~~l~~~G~~V~~~dr~~  197 (351)
T 3jtm_A          163 EGKTIGTVGAGRIGKLLLQRLKPFGCNLLYHDRLQ  197 (351)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGCCEEEEECSSC
T ss_pred             cCCEEeEEEeCHHHHHHHHHHHHCCCEEEEeCCCc
Confidence            2         7899999999999999999999864

>2ekl_A D-3-phosphoglycerate dehydrogenase; structural genomics, NPPSFA, national project on protein structural and functional analyses; HET: NAD; 1.77A {Sulfolobus tokodaii}

Probab=99.95  E-value=1.6e-28  Score=177.10  Aligned_cols=104  Identities=24%  Similarity=0.296  Sum_probs=93.0

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---chhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HAITE   81 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~~~~   81 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|....   ..+..
T Consensus        65 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~~  144 (313)
T 2ekl_A           65 KGKKLKIIARAGIGLDNIDTEEAEKRNIKVVYAPGASTDSAVELTIGLMIAAARKMYTSMALAKSGIFKKIEGLELAGKT  144 (313)
T ss_dssp             HCTTCCEEEECSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTTCCCCCCCCCCTTCE
T ss_pred             hCCCCeEEEEcCCCCCccCHHHHHhCCeEEEeCCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCE
Confidence            579999999999999999999999999999999999999999999999999999999999999999995211   11111


Q ss_pred             h----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +    .|+||+.+|+++++|||+|++|||+.
T Consensus       145 vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~  175 (313)
T 2ekl_A          145 IGIVGFGRIGTKVGIIANAMGMKVLAYDILD  175 (313)
T ss_dssp             EEEESCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEeeCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            1    27999999999999999999999875

>1j4a_A D-LDH, D-lactate dehydrogenase; NAD-dependent dehydrogenase, reversible interconversion of pyruvate INTO D-lactate; 1.90A {Lactobacillus delbrueckii subsp} SCOP: c.2.1.4 c.23.12.1 PDB: 1j49_A* 2dld_A*

Probab=99.95  E-value=1e-28  Score=179.43  Aligned_cols=104  Identities=16%  Similarity=0.106  Sum_probs=92.4

Q ss_pred             CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhh
Q psy15800          5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL   82 (109)
Q Consensus         5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l   82 (109)
                      .+|+  ||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|......+.++
T Consensus        65 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~l  144 (333)
T 1j4a_A           65 ALADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYSPNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREV  144 (333)
T ss_dssp             HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCG
T ss_pred             hccccCCeEEEECCcccccccHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHHcCHHHHHHHHHcCCCccCCcccccC
Confidence            3566  99999999999999999999999999999999999999999999999999999999999999984222222233


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       145 ~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (333)
T 1j4a_A          145 RDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR  179 (333)
T ss_dssp             GGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            2         7899999999999999999999875

>3hg7_A D-isomer specific 2-hydroxyacid dehydrogenase FAM protein; structural genomics; 1.80A {Aeromonas salmonicida subsp}

Probab=99.95  E-value=1.6e-28  Score=177.95  Aligned_cols=103  Identities=12%  Similarity=0.070  Sum_probs=92.5

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITE   81 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~   81 (109)
                      |+ .+|+||||++.++|+|+||.+++. +||.|+|+||+++++||||+++++|++.|+++.+.+.+++|.|....  +.+
T Consensus        62 l~-~~~~Lk~I~~~~~G~d~id~~~~~-~gI~v~n~~g~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~--~~~  137 (324)
T 3hg7_A           62 LA-KANKLSWFQSTYAGVDVLLDARCR-RDYQLTNVRGIFGPLMSEYVFGHLLSLMRQLPLYREQQKQRLWQSHP--YQG  137 (324)
T ss_dssp             GG-GCTTCCEEEESSSCCGGGSCTTSC-CSSEEECCCSCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCC--CCC
T ss_pred             Hh-hCCCceEEEECCCCCCccChHHHh-CCEEEEECCCcChHHHHHHHHHHHHHHHhChHHHHHHHhhCCCcCCC--Ccc
Confidence            45 689999999999999999998875 59999999999999999999999999999999999999999996542  122


Q ss_pred             h---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +         .|.||+.+|+++++|||+|++|||+.
T Consensus       138 l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  173 (324)
T 3hg7_A          138 LKGRTLLILGTGSIGQHIAHTGKHFGMKVLGVSRSG  173 (324)
T ss_dssp             STTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccceEEEEEECHHHHHHHHHHHhCCCEEEEEcCCh
Confidence            2         27899999999999999999999875

>3ba1_A HPPR, hydroxyphenylpyruvate reductase; two domain protein, substrate binding domain, cofactor bindi domain, oxidoreductase; 1.47A {Solenostemon scutellarioides} PDB: 3baz_A*

Probab=99.95  E-value=1.9e-28  Score=178.12  Aligned_cols=104  Identities=28%  Similarity=0.359  Sum_probs=93.7

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhhhc
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITELI   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~l~   83 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+.+.+++|.|.... +.+.++.
T Consensus        84 ~~p~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~pg~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~l~  163 (333)
T 3ba1_A           84 ALPKLEIVSSFSVGLDKVDLIKCEEKGVRVTNTPDVLTDDVADLAIGLILAVLRRICECDKYVRRGAWKFGDFKLTTKFS  163 (333)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHHTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTGGGGCCCCCCCCCT
T ss_pred             hCCCCcEEEEcCccccccCHHHHHhCCcEEEECCCcchHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCccccccccccC
Confidence            579999999999999999999999999999999999999999999999999999999999999999995321 1122332


Q ss_pred             ---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 ---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 ---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                               |+||+.+|+++++|||+|++|||+.
T Consensus       164 g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~dr~~  197 (333)
T 3ba1_A          164 GKRVGIIGLGRIGLAVAERAEAFDCPISYFSRSK  197 (333)
T ss_dssp             TCCEEEECCSHHHHHHHHHHHTTTCCEEEECSSC
T ss_pred             CCEEEEECCCHHHHHHHHHHHHCCCEEEEECCCc
Confidence                     7899999999999999999999875

>1dxy_A D-2-hydroxyisocaproate dehydrogenase; D-2-hydroxycarboxylate dehydrogenase, D-lactate dehydrogenas oxidoreductase; HET: NAD; 1.86A {Lactobacillus casei} SCOP: c.2.1.4 c.23.12.1

Probab=99.95  E-value=9.4e-29  Score=179.62  Aligned_cols=104  Identities=18%  Similarity=0.210  Sum_probs=92.1

Q ss_pred             CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCc-ccchhhh
Q psy15800          5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKS-QQHAITE   81 (109)
Q Consensus         5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~-~~~~~~~   81 (109)
                      .+|+  ||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+|.. ....+.+
T Consensus        63 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~  142 (333)
T 1dxy_A           63 KMHAYGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYSPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKE  142 (333)
T ss_dssp             HHHHTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCC
T ss_pred             hCcccCceEEEEcCcccCccCHHHHHhCCCEEEeCCCCCchHHHHHHHHHHHHHhhhHHHHHHHHHcCCcccccCCCccC
Confidence            3566  999999999999999999999999999999999999999999999999999999999999999842 1112223


Q ss_pred             hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.         |+||+.+|+++++|||+|++|||+.
T Consensus       143 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  178 (333)
T 1dxy_A          143 LGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP  178 (333)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            32         7899999999999999999999875

>1gdh_A D-glycerate dehydrogenase; oxidoreductase(CHOH (D)-NAD(P)+ (A)); 2.40A {Hyphomicrobium methylovorum} SCOP: c.2.1.4 c.23.12.1

Probab=99.95  E-value=3.7e-28  Score=175.64  Aligned_cols=104  Identities=27%  Similarity=0.316  Sum_probs=93.3

Q ss_pred             CCCC-ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---chhh
Q psy15800          5 AGEN-LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HAIT   80 (109)
Q Consensus         5 ~~p~-Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~~~   80 (109)
                      .+|+ ||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|..+.   ..+.
T Consensus        63 ~~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~~  142 (320)
T 1gdh_A           63 RIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGVTVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGE  142 (320)
T ss_dssp             HSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBC
T ss_pred             hCCccceEEEECCcccccccHHHHHhCCcEEEEcCCCCHHHHHHHHHHHHHHHHccHHHHHHHHHcCCCCccccccccCc
Confidence            5789 99999999999999999999999999999999999999999999999999999999999999996321   1122


Q ss_pred             hhc---------cchHHHHHHHHhhcCCEEEEEcc-cc
Q psy15800         81 ELI---------TQSDTNHTQRCLASIMQLVYSTC-YN  108 (109)
Q Consensus        81 ~l~---------G~IG~~va~~~~~fg~~V~~~~r-~~  108 (109)
                      ++.         |.||+.+|+++++|||+|++||| +.
T Consensus       143 ~l~g~~vgIIG~G~IG~~~A~~l~~~G~~V~~~d~~~~  180 (320)
T 1gdh_A          143 KLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHRA  180 (320)
T ss_dssp             CCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSCC
T ss_pred             CCCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCCc
Confidence            332         78999999999999999999999 54

>3gg9_A D-3-phosphoglycerate dehydrogenase oxidoreductase; structural genomics, PSI-2, P structure initiative; 1.90A {Ralstonia solanacearum}

Probab=99.95  E-value=6e-28  Score=176.54  Aligned_cols=105  Identities=20%  Similarity=0.083  Sum_probs=94.0

Q ss_pred             cccCCCCceEEEecCccC----CcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-
Q psy15800          2 SSRAGENLKVISTFSVGH----DHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-   76 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~----d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-   76 (109)
                      |+ .+|+||+|+..++|+    |+||++++.++||.|+|+||+ +++||||+++++|++.|+++.+.+.+++|+|.... 
T Consensus        66 l~-~~~~Lk~I~~~g~G~~~~~d~id~~~a~~~gI~V~n~pg~-~~~vAE~al~l~L~~~R~~~~~~~~~~~g~W~~~~~  143 (352)
T 3gg9_A           66 LD-RLPKLKIISQTGRVSRDAGGHIDLEACTDKGVVVLEGKGS-PVAPAELTWALVMAAQRRIPQYVASLKHGAWQQSGL  143 (352)
T ss_dssp             HT-TCTTCCEEEESSCCCCSSSCSBCHHHHHHHTCEEECCCCC-SHHHHHHHHHHHHHHHTTHHHHHHHHHTTCTTCCCC
T ss_pred             Hh-hCCCCeEEEEeCcccCCccCcccHHHHHhCCeEEEECCCC-cHHHHHHHHHHHHHHHhhHHHHHHHHHcCCCCcccc
Confidence            45 689999999999999    999999999999999999999 99999999999999999999999999999997531 


Q ss_pred             ---------chhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         77 ---------HAITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        77 ---------~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                               ..+.++.         |.||+.+|+++++|||+|++|||+.
T Consensus       144 ~~~~~~~~~~~~~~l~g~tvGIIGlG~IG~~vA~~l~~~G~~V~~~d~~~  193 (352)
T 3gg9_A          144 KSTTMPPNFGIGRVLKGQTLGIFGYGKIGQLVAGYGRAFGMNVLVWGREN  193 (352)
T ss_dssp             CCTTSCTTTTSBCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSHH
T ss_pred             cccccccccccCccCCCCEEEEEeECHHHHHHHHHHHhCCCEEEEECCCC
Confidence                     1223332         7899999999999999999999863

>1xdw_A NAD+-dependent (R)-2-hydroxyglutarate dehydrogenase; structural variant of the BAB rossmann fold, oxidoreductase; 1.98A {Acidaminococcus fermentans}

Probab=99.95  E-value=2.5e-28  Score=177.24  Aligned_cols=104  Identities=18%  Similarity=0.130  Sum_probs=92.3

Q ss_pred             CCCC--ceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCc-ccchhhh
Q psy15800          5 AGEN--LKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKS-QQHAITE   81 (109)
Q Consensus         5 ~~p~--Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~-~~~~~~~   81 (109)
                      .+|+  ||+|++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+.+.+++|.|.. ....+.+
T Consensus        64 ~~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~~  143 (331)
T 1xdw_A           64 IYKKLGVKYILTRTAGTDHIDKEYAKELGFPMAFVPRYSPNAIAELAVTQAMMLLRHTAYTTSRTAKKNFKVDAFMFSKE  143 (331)
T ss_dssp             HHHHHTCCEEEESSSCCTTBCHHHHHHTTCCEECCCCCCHHHHHHHHHHHHHHHHTTHHHHHHHHTTTCCCCCSTTCCCC
T ss_pred             hCcccCceEEEEccccccccCHHHHHhCCcEEEeCCCCCcHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCccccCcCccC
Confidence            3566  999999999999999999999999999999999999999999999999999999999999999852 1112223


Q ss_pred             hc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.         |+||+.+|+++++|||+|++|||+.
T Consensus       144 l~g~~vgIiG~G~IG~~~A~~l~~~G~~V~~~d~~~  179 (331)
T 1xdw_A          144 VRNCTVGVVGLGRIGRVAAQIFHGMGATVIGEDVFE  179 (331)
T ss_dssp             GGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCCCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            32         7899999999999999999999875

>2yq5_A D-isomer specific 2-hydroxyacid dehydrogenase; oxidoreductase; HET: NAD; 2.75A {Lactobacillus delbrueckii subsp} PDB: 2yq4_A*

Probab=99.95  E-value=4.3e-28  Score=176.80  Aligned_cols=102  Identities=16%  Similarity=0.099  Sum_probs=89.1

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHH-cCCCCc-ccchhhhhc-
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA-SGTEKS-QQHAITELI-   83 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~-~g~w~~-~~~~~~~l~-   83 (109)
                      ++||+|++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+.+.++ +|+|.. ....+.++. 
T Consensus        69 ~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~~g~~~w~~~~~~~~l~g  148 (343)
T 2yq5_A           69 YGVKCIGLRIVGFNTINFDWTKKYNLLVTNVPVYSPRAIAEMTVTQAMYLLRKIGEFRYRMDHDHDFTWPSNLISNEIYN  148 (343)
T ss_dssp             TTCCEEEESSSCCTTBCSSTTCC--CEEECCSCSCHHHHHHHHHHHHHHHHHTHHHHHHHHHHHCCCCCCGGGCBCCGGG
T ss_pred             cCceEEEECceeecccchhHHHhCCEEEEECCCCCcHHHHHHHHHHHHHHHhchHHHHHHHHHcCCcccccCCCccccCC
Confidence            47999999999999999999999999999999999999999999999999999999999999 887642 122233333 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |.||+.+|+++++|||+|++|||+.
T Consensus       149 ktvgIiGlG~IG~~vA~~l~~~G~~V~~~d~~~  181 (343)
T 2yq5_A          149 LTVGLIGVGHIGSAVAEIFSAMGAKVIAYDVAY  181 (343)
T ss_dssp             SEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CeEEEEecCHHHHHHHHHHhhCCCEEEEECCCh
Confidence                    7899999999999999999999975

>2nac_A NAD-dependent formate dehydrogenase; oxidoreductase(aldehyde(D),NAD+(A)); 1.80A {Pseudomonas SP} SCOP: c.2.1.4 c.23.12.1 PDB: 2nad_A* 2go1_A 2gug_A* 2gsd_A* 3fn4_A

Probab=99.95  E-value=6.6e-28  Score=178.41  Aligned_cols=104  Identities=21%  Similarity=0.249  Sum_probs=93.2

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAITEL   82 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~~l   82 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+|++++++||||+++++|++.|++..+++.+++|.|....  ..+.++
T Consensus       110 ~~p~Lk~I~~~g~G~d~iD~~aa~~~gI~V~n~~g~~~~~VAE~al~liL~~~R~~~~~~~~~~~g~W~~~~~~~~~~~l  189 (393)
T 2nac_A          110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSISVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDL  189 (393)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCC
T ss_pred             hCCCCcEEEEcCccccccCHHHHhcCCEEEEeCCCcccHHHHHHHHHHHHHHHhccHHHHHHHHcCCCCccccccCCccC
Confidence            579999999999999999999999999999999999999999999999999999999999999999996321  111223


Q ss_pred             c---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 I---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .         |+||+.+|+++++|||+|++|||+.
T Consensus       190 ~gktvGIIGlG~IG~~vA~~l~a~G~~V~~~d~~~  224 (393)
T 2nac_A          190 EAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR  224 (393)
T ss_dssp             TTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CCCEEEEEeECHHHHHHHHHHHhCCCEEEEEcCCc
Confidence            2         7899999999999999999999874

>1mx3_A CTBP1, C-terminal binding protein 1; nuclear protein, phosphorylation, transcriptional corepresso transcription repressor; HET: NAD; 1.95A {Homo sapiens} SCOP: c.2.1.4 c.23.12.1 PDB: 1hku_A* 1hl3_A* 2hu2_A* 3ga0_A 2ome_A*

Probab=99.95  E-value=1.2e-27  Score=174.75  Aligned_cols=106  Identities=17%  Similarity=0.213  Sum_probs=93.7

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccch---
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHA---   78 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~---   78 (109)
                      |+ .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+.+.+++|+|......   
T Consensus        80 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gI~V~n~~~~~~~~vAE~~~~l~L~~~R~~~~~~~~~~~g~w~~~~~~~~~  158 (347)
T 1mx3_A           80 LE-KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASVEETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIRE  158 (347)
T ss_dssp             HT-TCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHH
T ss_pred             Hh-hCCCCCEEEEcccccCcccHHHHHhCCceEEECCCCCHHHHHHHHHHHHHHHHHhHHHHHHHHHcCCcccccccccc
Confidence            34 58999999999999999999999999999999999999999999999999999999999999999999532100   


Q ss_pred             ---h-hhh---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         79 ---I-TEL---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        79 ---~-~~l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                         + .++         .|+||+.+|+++++|||+|++|||+.
T Consensus       159 ~~~~~~~l~g~tvGIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  201 (347)
T 1mx3_A          159 VASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDPYL  201 (347)
T ss_dssp             HTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             cccCccCCCCCEEEEEeECHHHHHHHHHHHHCCCEEEEECCCc
Confidence               0 122         27899999999999999999999864

>4hy3_A Phosphoglycerate oxidoreductase; PSI-biology, structural genomics, protein structure initiati acid transport and metabolism, NAD binding domain.; 2.80A {Rhizobium etli}

Probab=99.95  E-value=6.2e-28  Score=177.11  Aligned_cols=106  Identities=18%  Similarity=0.171  Sum_probs=92.9

Q ss_pred             cccCCCCceEEEec-CccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCC--CCccc-c
Q psy15800          2 SSRAGENLKVISTF-SVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGT--EKSQQ-H   77 (109)
Q Consensus         2 l~~~~p~Lk~i~~~-~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~--w~~~~-~   77 (109)
                      |+ .+|+||+|+.. ++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|+  |.... .
T Consensus        91 l~-~~p~Lk~I~~~~~~G~d~iD~~~a~~~GI~V~n~~~~~~~~vAE~~l~l~L~~~R~~~~~~~~~r~g~~~w~~~~~~  169 (365)
T 4hy3_A           91 LA-RMPALRSILNVESNLLNNMPYEVLFQRGIHVVTTGQVFAEPVAEIGLGFALALARGIVDADIAFQEGTELWGGEGNA  169 (365)
T ss_dssp             HT-TCTTCCEEECCSSSCCSCSCTTHHHHSCCEEEECGGGGHHHHHHHHHHHHHHHHHTTTHHHHHHHHTCCCCSSSSTT
T ss_pred             Hh-hCCCCeEEEEecccccCcccHHHHhcCCeEEEeCCCccchHHHHHHHHHHHHHHhchhHHHHHHHcCCccccccccc
Confidence            45 68999999975 89999999999999999999999999999999999999999999999999999998  43221 1


Q ss_pred             hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+.++.         |.||+.+|+++++|||+|++|||+.
T Consensus       170 ~~~~l~gktvGIIGlG~IG~~vA~~l~~fG~~V~~~d~~~  209 (365)
T 4hy3_A          170 SARLIAGSEIGIVGFGDLGKALRRVLSGFRARIRVFDPWL  209 (365)
T ss_dssp             SCCCSSSSEEEEECCSHHHHHHHHHHTTSCCEEEEECSSS
T ss_pred             cccccCCCEEEEecCCcccHHHHHhhhhCCCEEEEECCCC
Confidence            223332         7899999999999999999999874

>1ygy_A PGDH, D-3-phosphoglycerate dehydrogenase; oxidoreductase, serine biosy structural genomics, PSI, protein structure initiative; HET: TAR; 2.30A {Mycobacterium tuberculosis} SCOP: c.2.1.4 c.23.12.1 d.58.18.1 d.81.2.2 PDB: 3dc2_A* 3ddn_A*

Probab=99.94  E-value=1.9e-27  Score=181.46  Aligned_cols=104  Identities=24%  Similarity=0.261  Sum_probs=94.6

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc-
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI-   83 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~-   83 (109)
                      .+|+||||+..++|+|++|++++.++||.|+|+|++++.+||||+++++|++.|+++.+++.+++|+|.+....+.++. 
T Consensus        63 ~~~~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~p~~~~~~vAE~~~~~~l~~~R~~~~~~~~~~~g~w~~~~~~~~~l~g  142 (529)
T 1ygy_A           63 AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSNIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFG  142 (529)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTT
T ss_pred             hCCCCcEEEECCcCcCccCHhHHHhCCeEEEECCCcchHHHHHHHHHHHHHHHhhhHHHHHHHHhCCCcccCcCccccCC
Confidence            5899999999999999999999999999999999999999999999999999999999999999999975322223332 


Q ss_pred             --------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 --------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 --------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                              |.||+.+|+++++|||+|++|||+.
T Consensus       143 ~~vgIIG~G~IG~~vA~~l~~~G~~V~~~d~~~  175 (529)
T 1ygy_A          143 KTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV  175 (529)
T ss_dssp             CEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CEEEEEeeCHHHHHHHHHHHhCCCEEEEECCCC
Confidence                    7899999999999999999999874

>2j6i_A Formate dehydrogenase; oxidoreductase, D-specific-2- hydroxy acid dehydrogenase, cofactor regenerator, yeast, CBFDH; HET: PG4; 1.55A {Candida boidinii} PDB: 2fss_A

Probab=99.94  E-value=1.6e-27  Score=174.93  Aligned_cols=104  Identities=21%  Similarity=0.233  Sum_probs=92.8

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhc--CcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSR--GIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAIT   80 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~--gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~~   80 (109)
                      .+|+||||++.++|+|+||++++.++  ||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|....  ..+.
T Consensus        81 ~~~~Lk~I~~~~~G~d~id~~~~~~~~~gI~V~n~pg~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~~~~~~~~  160 (364)
T 2j6i_A           81 KAKKLKLVVVAGVGSDHIDLDYINQTGKKISVLEVTGSNVVSVAEHVVMTMLVLVRNFVPAHEQIINHDWEVAAIAKDAY  160 (364)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHHTCCCEEEECTTSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCC
T ss_pred             hCCCCeEEEECCcccccccHHHHHhcCCCEEEEECCCcCcHHHHHHHHHHHHHHHhChHHHHHHHHhCCCCcCcccCCcc
Confidence            57999999999999999999999999  9999999999999999999999999999999999999999996321  1122


Q ss_pred             hhc---------cchHHHHHHHHhhcCCE-EEEEcccc
Q psy15800         81 ELI---------TQSDTNHTQRCLASIMQ-LVYSTCYN  108 (109)
Q Consensus        81 ~l~---------G~IG~~va~~~~~fg~~-V~~~~r~~  108 (109)
                      ++.         |+||+.+|+++++|||+ |++|||+.
T Consensus       161 ~l~g~tvgIIG~G~IG~~vA~~l~~~G~~~V~~~d~~~  198 (364)
T 2j6i_A          161 DIEGKTIATIGAGRIGYRVLERLVPFNPKELLYYDYQA  198 (364)
T ss_dssp             CSTTCEEEEECCSHHHHHHHHHHGGGCCSEEEEECSSC
T ss_pred             cCCCCEEEEECcCHHHHHHHHHHHhCCCcEEEEECCCc
Confidence            232         78999999999999997 99999864

>2d0i_A Dehydrogenase; structural genomics, NPPSFA, national project protein structural and functional analyses; 1.95A {Pyrococcus horikoshii}

Probab=99.94  E-value=1.8e-27  Score=172.81  Aligned_cols=106  Identities=30%  Similarity=0.385  Sum_probs=94.6

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc--chh
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ--HAI   79 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~--~~~   79 (109)
                      |+ .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|..+.  ..+
T Consensus        59 l~-~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~~  137 (333)
T 2d0i_A           59 LE-NAERLKVISCHSAGYDNIDLEEATKRGIYVTKVSGLLSEAVAEFTVGLIINLMRKIHYADKFIRRGEWESHAKIWTG  137 (333)
T ss_dssp             HT-TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCHHHHHTT
T ss_pred             Hh-hCCCceEEEECCcccccccHHHHHhCCcEEEeCCCcChHHHHHHHHHHHHHHHhHHHHHHHHHHcCCCCcCcccccC
Confidence            44 689999999999999999999999999999999999999999999999999999999999999999996421  112


Q ss_pred             ----hhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         80 ----TELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        80 ----~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                          .++.         |.||+.+|+++++|||+|++|||+.
T Consensus       138 ~~~~~~l~g~~vgIIG~G~iG~~vA~~l~~~G~~V~~~d~~~  179 (333)
T 2d0i_A          138 FKRIESLYGKKVGILGMGAIGKAIARRLIPFGVKLYYWSRHR  179 (333)
T ss_dssp             SCCCCCSTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             CcccCCCCcCEEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence                2332         7899999999999999999999875

>2dbq_A Glyoxylate reductase; D-3-phosphoglycerate dehydrogenase, ST genomics, NPPSFA; HET: NAP; 1.70A {Pyrococcus horikoshii} PDB: 2dbr_A* 2dbz_A*

Probab=99.94  E-value=1.6e-27  Score=173.07  Aligned_cols=104  Identities=21%  Similarity=0.364  Sum_probs=93.3

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCC----cccc---
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEK----SQQH---   77 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~----~~~~---   77 (109)
                      .+|+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.|.    .+.+   
T Consensus        64 ~~~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~  143 (334)
T 2dbq_A           64 NAPKLRIVANYAVGYDNIDIEEATKRGIYVTNTPDVLTDATADLAFALLLATARHVVKGDRFVRSGEWKKRGVAWHPKWF  143 (334)
T ss_dssp             TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHHTHHHHHHHHHTSHHHHTTCCCCTTTT
T ss_pred             hCCCceEEEECCcccccccHHHHHhCCCEEEeCCCcCHHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccccccccccc
Confidence            589999999999999999999999999999999999999999999999999999999999999999995    2211   


Q ss_pred             hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+.++.         |.||+.+|+++++|||+|++|||+.
T Consensus       144 ~~~~l~g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  183 (334)
T 2dbq_A          144 LGYDVYGKTIGIIGLGRIGQAIAKRAKGFNMRILYYSRTR  183 (334)
T ss_dssp             CCCCCTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             cccCCCCCEEEEEccCHHHHHHHHHHHhCCCEEEEECCCc
Confidence            122332         7899999999999999999999875

>2gcg_A Glyoxylate reductase/hydroxypyruvate reductase; NAD(P) rossmann fold, formate/glycerate dehydrogenase substr binding domain, oxidoreductase; HET: NDP; 2.20A {Homo sapiens} PDB: 2wwr_A 2h1s_A 2q50_A

Probab=99.94  E-value=3.6e-27  Score=170.93  Aligned_cols=102  Identities=35%  Similarity=0.395  Sum_probs=92.2

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hhhhhc
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AITELI   83 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~l~   83 (109)
                      |+||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+.+.+++|.|..+.+   .+.++.
T Consensus        75 ~~Lk~I~~~~~G~d~id~~~~~~~gi~v~n~~~~~~~~vAe~~~~~~L~~~R~~~~~~~~~~~~~w~~~~~~~~~~~~l~  154 (330)
T 2gcg_A           75 ANLKVISTMSVGIDHLALDEIKKRGIRVGYTPDVLTDTTAELAVSLLLTTCRRLPEAIEEVKNGGWTSWKPLWLCGYGLT  154 (330)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCSCCTTSSCBCCCT
T ss_pred             CCceEEEECCcccccccHHHHHhCCceEEeCCCCChHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCcccCcccccCcCCC
Confidence            99999999999999999999999999999999999999999999999999999999999999999964321   122332


Q ss_pred             ---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 ---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 ---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                               |.||+.+|+++++|||+|++|||+.
T Consensus       155 g~~vgIIG~G~iG~~iA~~l~~~G~~V~~~d~~~  188 (330)
T 2gcg_A          155 QSTVGIIGLGRIGQAIARRLKPFGVQRFLYTGRQ  188 (330)
T ss_dssp             TCEEEEECCSHHHHHHHHHHGGGTCCEEEEESSS
T ss_pred             CCEEEEECcCHHHHHHHHHHHHCCCEEEEECCCC
Confidence                     7899999999999999999999864

>1qp8_A Formate dehydrogenase; oxidoreductase; HET: NDP; 2.80A {Pyrobaculum aerophilum} SCOP: c.2.1.4 c.23.12.1

Probab=99.94  E-value=2.1e-27  Score=170.70  Aligned_cols=103  Identities=22%  Similarity=0.181  Sum_probs=91.5

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc----hhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH----AIT   80 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~----~~~   80 (109)
                      .+|+||||++.++|+|+||++++ ++||.|+|+||+++.+||||+++++|++.|+++.+++.+++|.|....+    .+.
T Consensus        47 ~~~~Lk~I~~~~~G~d~id~~~~-~~gi~v~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~~l~g~  125 (303)
T 1qp8_A           47 KMPRLKFIQVVTAGLDHLPWESI-PPHVTVAGNAGSNADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGE  125 (303)
T ss_dssp             HCTTCCCEEBSSSCCTTSCCTTS-CTTSCEECCCSSSHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTC
T ss_pred             hCCCCcEEEECCcCcccccHHHH-hcCCEEEECCCCCchHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCCCCCC
Confidence            57999999999999999999885 7999999999999999999999999999999999999999999964311    111


Q ss_pred             hh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         81 EL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        81 ~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+    .|+||+.+|+++++|||+|++|||+.
T Consensus       126 ~vgIIG~G~IG~~~A~~l~~~G~~V~~~dr~~  157 (303)
T 1qp8_A          126 KVAVLGLGEIGTRVGKILAALGAQVRGFSRTP  157 (303)
T ss_dssp             EEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             EEEEEccCHHHHHHHHHHHHCCCEEEEECCCc
Confidence            22    28999999999999999999999875

>2w2k_A D-mandelate dehydrogenase; 2-hydroxyacid dehydrogenase, oxidoreductase; 1.85A {Rhodotorula graminis} PDB: 2w2l_A* 2w2l_D* 2w2k_B

Probab=99.94  E-value=3.8e-27  Score=172.01  Aligned_cols=106  Identities=19%  Similarity=0.237  Sum_probs=93.1

Q ss_pred             cccCCC-CceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCC---CCccc-
Q psy15800          2 SSRAGE-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGT---EKSQQ-   76 (109)
Q Consensus         2 l~~~~p-~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~---w~~~~-   76 (109)
                      |+ .+| +||||++.++|+|+||++++.++||.|+|+||+++++||||+++++|++.|+++.+++.+++|.   |.... 
T Consensus        74 l~-~~~~~Lk~I~~~~~G~d~id~~~~~~~gI~v~n~p~~~~~~vAe~~~~l~L~~~R~~~~~~~~~~~g~~~~w~~~~~  152 (348)
T 2w2k_A           74 IS-HLPSSLKVFAAAGAGFDWLDLDALNERGVAFANSRGAGDTATSDLALYLILSVFRLASYSERAARTGDPETFNRVHL  152 (348)
T ss_dssp             HT-TSCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHTHHHHHHHHTTCCHHHHHHHHH
T ss_pred             HH-hcccCceEEEECCccccccCHHHHHhCCcEEEECCCCCcHHHHHHHHHHHHHHHhChHHHHHHHHcCCCcccccccc
Confidence            44 567 6999999999999999999999999999999999999999999999999999999999999999   93211 


Q ss_pred             ---chhhhhc---------cchHHHHHHHHh-hcCCEEEEEcccc
Q psy15800         77 ---HAITELI---------TQSDTNHTQRCL-ASIMQLVYSTCYN  108 (109)
Q Consensus        77 ---~~~~~l~---------G~IG~~va~~~~-~fg~~V~~~~r~~  108 (109)
                         ..+.++.         |+||+.+|++++ +|||+|++|||+.
T Consensus       153 ~~~~~~~~l~g~~vgIIG~G~IG~~vA~~l~~~~G~~V~~~d~~~  197 (348)
T 2w2k_A          153 EIGKSAHNPRGHVLGAVGLGAIQKEIARKAVHGLGMKLVYYDVAP  197 (348)
T ss_dssp             HHHTTCCCSTTCEEEEECCSHHHHHHHHHHHHTTCCEEEEECSSC
T ss_pred             cccccCcCCCCCEEEEEEECHHHHHHHHHHHHhcCCEEEEECCCC
Confidence               1122232         789999999999 9999999999874

>3pp8_A Glyoxylate/hydroxypyruvate reductase A; structural genomics, center for structural genomics of infec diseases, csgid; 2.10A {Salmonella enterica subsp} PDB: 3kbo_A

Probab=99.93  E-value=2.1e-26  Score=166.28  Aligned_cols=105  Identities=12%  Similarity=0.077  Sum_probs=88.8

Q ss_pred             cccCCCCceEEEecCccCCcc-c-HHH---HhhcCcEEEecCCCC-ccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcc
Q psy15800          2 SSRAGENLKVISTFSVGHDHL-H-LDQ---IKSRGIRVGTVGPVS-SDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQ   75 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~i-d-~~~---~~~~gi~v~n~~g~~-~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~   75 (109)
                      |+ . |+||||++.++|+|+| | +++   +.++||+|+|+++.. +.+||||+++++|++.|+++.+.+.+++|.|...
T Consensus        55 l~-~-~~Lk~I~~~~aG~d~i~d~~~a~~~~~~~gi~v~~~~~~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~W~~~  132 (315)
T 3pp8_A           55 LA-G-RRLKAVFVLGAGVDAILSKLNAHPEMLDASIPLFRLEDTGMGLQMQEYAVSQVLHWFRRFDDYQALKNQALWKPL  132 (315)
T ss_dssp             HT-T-CCCSEEEESSSCCHHHHHHHHHCTTSSCTTSCEEEC--CCCHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCC
T ss_pred             hC-C-CCceEEEECCEecccccchhhhhhhhhcCCCEEEEcCCCCccHHHHHHHHHHHHHHHhCChHHHHHHHhcccCCC
Confidence            45 5 9999999999999999 7 876   678899999998764 7999999999999999999999999999999654


Q ss_pred             cc---hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         76 QH---AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        76 ~~---~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ..   .+..+    .|+||+.+|+++++|||+|++|||+.
T Consensus       133 ~~~~l~g~tvGIiG~G~IG~~vA~~l~~~G~~V~~~dr~~  172 (315)
T 3pp8_A          133 PEYTREEFSVGIMGAGVLGAKVAESLQAWGFPLRCWSRSR  172 (315)
T ss_dssp             CCCCSTTCCEEEECCSHHHHHHHHHHHTTTCCEEEEESSC
T ss_pred             CCCCcCCCEEEEEeeCHHHHHHHHHHHHCCCEEEEEcCCc
Confidence            21   11111    27999999999999999999999875

>3gvx_A Glycerate dehydrogenase related protein; NYSGXRC, PSI-II, 11143J, structural genomics, protein structure initiative; 2.20A {Thermoplasma acidophilum}

Probab=99.93  E-value=2.6e-26  Score=164.20  Aligned_cols=103  Identities=18%  Similarity=0.193  Sum_probs=88.6

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hhhh
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AITE   81 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~   81 (109)
                      .+|+||||++.++|+|+||++++.++++.++|. |.++++||||+++++|++.|+++.+++.+++|+|.....   .+..
T Consensus        46 ~~~~Lk~I~~~~~G~d~id~~~~~~~~~~~~~~-~~~~~~vAE~~~~~~L~~~R~~~~~~~~~~~g~w~~~~~~~l~g~t  124 (290)
T 3gvx_A           46 LGKRTKMIQAISAGVDHIDVNGIPENVVLCSNA-GAYSISVAEHAFALLLAHAKNILENNELMKAGIFRQSPTTLLYGKA  124 (290)
T ss_dssp             CCSSCCEEEECSSCCTTSCGGGSCTTSEEECCH-HHHHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCCCCCTTCE
T ss_pred             hhhhhHHHHHHhcCCceeecCCCccceEEeecC-CcceeeHHHHHHHHHHHHHHhhhhhhhHhhhcccccCCceeeecch
Confidence            479999999999999999999998876665554 778999999999999999999999999999999965432   1111


Q ss_pred             h----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +    .|.||+.+|+++++|||+|++|||+.
T Consensus       125 vGIIGlG~IG~~vA~~l~~~G~~V~~~dr~~  155 (290)
T 3gvx_A          125 LGILGYGGIGRRVAHLAKAFGMRVIAYTRSS  155 (290)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCEEEEECSSC
T ss_pred             heeeccCchhHHHHHHHHhhCcEEEEEeccc
Confidence            1    27899999999999999999999975

>3oet_A Erythronate-4-phosphate dehydrogenase; structural genomics, center for structural genomics of infec diseases, csgid; HET: NAD; 2.36A {Salmonella enterica subsp}

Probab=99.87  E-value=8.1e-23  Score=150.57  Aligned_cols=94  Identities=15%  Similarity=0.136  Sum_probs=78.4

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccc
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQ   85 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~   85 (109)
                      .++||||++.++|+|+||++++.++||.|+|+||+++.+||||+++++|++.|+..        .++.. ...+.--.|+
T Consensus        59 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~VAE~~l~~lL~l~r~~g--------~~l~g-ktvGIIGlG~  129 (381)
T 3oet_A           59 GTPINFVGTATAGTDHVDEAWLKQAGIGFSAAPGCNAIAVVEYVFSALLMLAERDG--------FSLRD-RTIGIVGVGN  129 (381)
T ss_dssp             TSCCCEEEESSSCCTTBCHHHHHHTTCEEECCTTTTHHHHHHHHHHHHHHHHHHTT--------CCGGG-CEEEEECCSH
T ss_pred             CCCCEEEEEccccccccCHHHHHhCCEEEEECCCcCcchhHHHHHHHHHHHHHhcC--------CccCC-CEEEEEeECH
Confidence            46799999999999999999999999999999999999999999999999998641        11110 1111112489


Q ss_pred             hHHHHHHHHhhcCCEEEEEcccc
Q psy15800         86 SDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        86 IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ||+.+|+++++|||+|++|||+.
T Consensus       130 IG~~vA~~l~a~G~~V~~~d~~~  152 (381)
T 3oet_A          130 VGSRLQTRLEALGIRTLLCDPPR  152 (381)
T ss_dssp             HHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHCCCEEEEECCCh
Confidence            99999999999999999999863

>2o4c_A Erythronate-4-phosphate dehydrogenase; erythronate-4-phsphate, NAD, tartrate, phosph oxidoreductase; HET: NAD TLA; 2.30A {Pseudomonas aeruginosa}

Probab=99.87  E-value=2.4e-22  Score=148.14  Aligned_cols=94  Identities=15%  Similarity=0.162  Sum_probs=78.8

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccc
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQ   85 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~   85 (109)
                      +|+||||++.++|+|+||++++.++||.|+|+||+++.+||||+++++|++.|+..        .+... ...+.--.|+
T Consensus        56 ~~~Lk~I~~~~~G~D~iD~~~~~~~gI~v~n~pg~~~~~vAE~~l~~lL~l~r~~~--------~~l~g-~tvGIIGlG~  126 (380)
T 2o4c_A           56 GSPVRFVGTCTIGTDHLDLDYFAEAGIAWSSAPGCNARGVVDYVLGCLLAMAEVRG--------ADLAE-RTYGVVGAGQ  126 (380)
T ss_dssp             TSCCCEEEECSSCSTTBCHHHHHHHTCEEECCTTTTHHHHHHHHHHHHHHHHHHHT--------CCGGG-CEEEEECCSH
T ss_pred             CCCceEEEEcCcccchhhHHHHHhCCCEEEeCCCcChHHHHHHHHHHHHHHHhhhh--------cccCC-CEEEEEeCCH
Confidence            69999999999999999999999999999999999999999999999999999731        01100 0111111489


Q ss_pred             hHHHHHHHHhhcCCEEEEEcccc
Q psy15800         86 SDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        86 IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ||+.+|+++++|||+|++|||+.
T Consensus       127 IG~~vA~~l~~~G~~V~~~d~~~  149 (380)
T 2o4c_A          127 VGGRLVEVLRGLGWKVLVCDPPR  149 (380)
T ss_dssp             HHHHHHHHHHHTTCEEEEECHHH
T ss_pred             HHHHHHHHHHHCCCEEEEEcCCh
Confidence            99999999999999999999864

>3d4o_A Dipicolinate synthase subunit A; NP_243269.1, structural GEN joint center for structural genomics, JCSG, protein structu initiative, PSI-2; HET: MSE TAR; 2.10A {Bacillus halodurans}

Probab=99.61  E-value=2.1e-16  Score=112.45  Aligned_cols=89  Identities=15%  Similarity=-0.007  Sum_probs=70.9

Q ss_pred             CCCCceEEEecCccCCcccH-HHHhhcCcEEEecC------CCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc
Q psy15800          5 AGENLKVISTFSVGHDHLHL-DQIKSRGIRVGTVG------PVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH   77 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~-~~~~~~gi~v~n~~------g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~   77 (109)
                      .+|+||+|+   +|+|++|+ +++.++||.|+|.|      ++++.+|||++++++|...           ..+.... .
T Consensus        93 ~~~~l~~i~---~G~d~id~~~~~~~~gi~v~~~~~~~~~~~~~~~svae~a~~~~l~~~-----------~~~l~g~-~  157 (293)
T 3d4o_A           93 KTPNHCVVY---SGISNTYLNQCMKKTNRTLVKLMERDDIAIYNSIPTAEGTIMMAIQHT-----------DFTIHGA-N  157 (293)
T ss_dssp             TSCTTCEEE---ESSCCHHHHHHHHHHTCEEEEGGGCHHHHHHHHHHHHHHHHHHHHHHC-----------SSCSTTC-E
T ss_pred             hCCCCCEEE---ecCCCHHHHHHHHHcCCeEEEecCCceeeeeccHhHHHHHHHHHHHhc-----------CCCCCCC-E
Confidence            579999997   89999998 89999999999988      7899999999999998741           0111111 1


Q ss_pred             hhhhhccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITELITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+---.|.||+.+|+++++|||+|+++||+.
T Consensus       158 v~IiG~G~iG~~~a~~l~~~G~~V~~~dr~~  188 (293)
T 3d4o_A          158 VAVLGLGRVGMSVARKFAALGAKVKVGARES  188 (293)
T ss_dssp             EEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             EEEEeeCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            1111138999999999999999999999864

>1v8b_A Adenosylhomocysteinase; hydrolase; HET: NAD ADN; 2.40A {Plasmodium falciparum} SCOP: c.2.1.4 c.23.12.3

Probab=99.34  E-value=8.5e-14  Score=105.15  Aligned_cols=92  Identities=9%  Similarity=-0.009  Sum_probs=74.9

Q ss_pred             CCCceEEE-ecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---chhhh
Q psy15800          6 GENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HAITE   81 (109)
Q Consensus         6 ~p~Lk~i~-~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~~~~   81 (109)
                      .|+++.|+ ..++|+|++  +++.++||.++|+++++. +|+|       +++|++....+.+.+| |.+..   ..+..
T Consensus       191 ~~~l~gi~eet~~Gvd~l--~a~~~~Gilv~p~~~vn~-sVae-------~l~r~~~~~~~~l~~g-w~r~~~~~l~Gkt  259 (479)
T 1v8b_A          191 AKKIIGVSEETTTGVLRL--KKMDKQNELLFTAINVND-AVTK-------QKYDNVYGCRHSLPDG-LMRATDFLISGKI  259 (479)
T ss_dssp             HTTCCEEEECSHHHHHHH--HHHHHTTCCCSEEEECTT-SHHH-------HTTHHHHHHHHHHHHH-HHHHHCCCCTTSE
T ss_pred             hcCeEEEEEeeCccHhHH--HHHHHcCCEEeccCCccH-HHHH-------HHHhchHhHHHHHhhh-hhhccccccCCCE
Confidence            36889998 889999998  789999999999999998 9999       4568888888888887 84321   11222


Q ss_pred             h----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 L----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +    .|.||+.+|+++++|||+|++|||+.
T Consensus       260 VgIIG~G~IG~~vA~~l~~~G~~Viv~d~~~  290 (479)
T 1v8b_A          260 VVICGYGDVGKGCASSMKGLGARVYITEIDP  290 (479)
T ss_dssp             EEEECCSHHHHHHHHHHHHHTCEEEEECSCH
T ss_pred             EEEEeeCHHHHHHHHHHHhCcCEEEEEeCCh
Confidence            2    27999999999999999999999864

>3d64_A Adenosylhomocysteinase; structural genomics, ssgcid, S-adenosyl-L-homocysteine hydro NAD, one-carbon metabolism; HET: NAD; 2.30A {Burkholderia pseudomallei} PDB: 3glq_A*

Probab=99.30  E-value=1.6e-13  Score=103.97  Aligned_cols=91  Identities=12%  Similarity=0.009  Sum_probs=70.8

Q ss_pred             CCceEEE-ecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---chhhhh
Q psy15800          7 ENLKVIS-TFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HAITEL   82 (109)
Q Consensus         7 p~Lk~i~-~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~~~~l   82 (109)
                      |+++.|+ ..++|+|++  +++.++||.++|+++++. +|||+.       +|++....+.+.+| |.+..   ..+..+
T Consensus       212 ~~l~gi~eet~~Gvd~l--~a~~~~Gilv~n~~~vn~-sVae~l-------~r~~~~~~~~l~~g-w~~~~g~~L~GktV  280 (494)
T 3d64_A          212 AHIKGVTEETTTGVHRL--YQMEKDGRLPFPAFNVND-SVTKSK-------FDNLYGCRESLVDG-IKRATDVMIAGKIA  280 (494)
T ss_dssp             TTCCCEEECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHH-------HHHHHHHHTTHHHH-HHHHHCCCCTTCEE
T ss_pred             hCcEEEEEEcccCHhhH--HHHHHCCCEEEECCCccH-HHHHHH-------HhhhHhhhhhhhhh-hhhccccccCCCEE
Confidence            7899998 889999988  788999999999999999 999954       36665555555555 63211   111111


Q ss_pred             ----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                          .|.||+.+|+++++|||+|++|||+.
T Consensus       281 gIIG~G~IG~~vA~~l~~~G~~V~v~d~~~  310 (494)
T 3d64_A          281 VVAGYGDVGKGCAQSLRGLGATVWVTEIDP  310 (494)
T ss_dssp             EEECCSHHHHHHHHHHHTTTCEEEEECSCH
T ss_pred             EEEccCHHHHHHHHHHHHCCCEEEEEeCCh
Confidence                38999999999999999999999864

>2rir_A Dipicolinate synthase, A chain; structural genomics, APC1343, PSI-2, structure initiative; HET: MSE NAP; 2.79A {Bacillus subtilis}

Probab=99.25  E-value=6.6e-13  Score=94.61  Aligned_cols=85  Identities=8%  Similarity=-0.055  Sum_probs=62.1

Q ss_pred             CCCCceEEEecCccCCccc-HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCc------ccc
Q psy15800          5 AGENLKVISTFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKS------QQH   77 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id-~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~------~~~   77 (109)
                      .+|++|+|+   +|+|++| ++++.++||.|+|.|+++  ++         ++.|+++..     +|.|..      ...
T Consensus        95 ~~~~l~~i~---~g~~~~d~~~~~~~~gi~v~~~~~~~--~v---------~~~r~~~~~-----~g~~~~~~~~~~~~l  155 (300)
T 2rir_A           95 RTPAHCVIF---SGISNAYLENIAAQAKRKLVKLFERD--DI---------AIYNSIPTV-----EGTIMLAIQHTDYTI  155 (300)
T ss_dssp             TSCTTCEEE---ESSCCHHHHHHHHHTTCCEEEGGGSH--HH---------HHHHHHHHH-----HHHHHHHHHTCSSCS
T ss_pred             hcCCCCEEE---EecCCHHHHHHHHHCCCEEEeecCCC--ce---------EEEcCccHH-----HHHHHHHHHhcCCCC
Confidence            579999998   9999999 999999999999999963  22         234444433     233321      001


Q ss_pred             hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         78 AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        78 ~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+..+    .|.||+.+|+++++|||+|++|||+.
T Consensus       156 ~g~~v~IiG~G~iG~~~a~~l~~~G~~V~~~d~~~  190 (300)
T 2rir_A          156 HGSQVAVLGLGRTGMTIARTFAALGANVKVGARSS  190 (300)
T ss_dssp             TTSEEEEECCSHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CCCEEEEEcccHHHHHHHHHHHHCCCEEEEEECCH
Confidence            11111    28999999999999999999999874

>2vhw_A Alanine dehydrogenase; NAD, secreted, oxidoreductase; HET: NAI; 2.0A {Mycobacterium tuberculosis} PDB: 2vhx_A* 2vhy_A 2vhz_A* 2vhv_A* 2voe_A 2voj_A*

Probab=98.61  E-value=8.5e-08  Score=70.32  Aligned_cols=98  Identities=8%  Similarity=0.001  Sum_probs=68.8

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEE----------ecCCCCccchHHHHHHHHHHHh-cCchHhHHHHHcCCCC
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVG----------TVGPVSSDAVAEFNIGLAIAVS-RRFQQGHNCIASGTEK   73 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~----------n~~g~~~~~vAE~~l~~~L~l~-R~~~~~~~~~~~g~w~   73 (109)
                      ..|+..++.....++|..+++.+.++||.+.          |.|.+  .++||++..+.+.+. |++...    ..|+|.
T Consensus        85 l~~~~~l~~~~~~~~~~~~l~~l~~~gi~~ia~e~v~~~~~~~p~~--s~~ae~ag~~a~~~a~r~l~~~----~~g~~~  158 (377)
T 2vhw_A           85 LRHGQILFTFLHLAASRACTDALLDSGTTSIAYETVQTADGALPLL--APMSEVAGRLAAQVGAYHLMRT----QGGRGV  158 (377)
T ss_dssp             CCTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTT--HHHHHHHHHHHHHHHHHHTSGG----GTSCCC
T ss_pred             cCCCCEEEEEecccCCHHHHHHHHHcCCeEEEeeeccccCCCcccc--CchHHHHHHHHHHHHHHHHHHh----cCCCcc
Confidence            3567777777788899999999999999997          55554  366799995555555 666332    334332


Q ss_pred             cccc----hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         74 SQQH----AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        74 ~~~~----~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ....    .+..+    .|.||+.+++.+++||++|+++|+..
T Consensus       159 ~~~~~~~l~g~~V~ViG~G~iG~~~a~~a~~~Ga~V~~~d~~~  201 (377)
T 2vhw_A          159 LMGGVPGVEPADVVVIGAGTAGYNAARIANGMGATVTVLDINI  201 (377)
T ss_dssp             CTTCBTTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             cccCCCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            1111    11111    27899999999999999999999863

>1x13_A NAD(P) transhydrogenase subunit alpha; NAD(H)-binding domain, rossmann fold, oxidoreductase; 1.90A {Escherichia coli} PDB: 1x14_A* 1x15_A* 2bru_A*

Probab=98.59  E-value=4.4e-09  Score=77.86  Aligned_cols=98  Identities=8%  Similarity=-0.002  Sum_probs=63.7

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHh--HHHHHc-----CCCCccc--
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG--HNCIAS-----GTEKSQQ--   76 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~--~~~~~~-----g~w~~~~--   76 (109)
                      .|++++|...+.|+|++|++++.++||++.+     .+.|+|++.++.|.+++.+...  ......     +.|....  
T Consensus        91 ~~~~~li~~~~~~~d~~~~~al~~~gI~v~~-----~e~v~~~~~a~~l~~l~~~a~~ag~~av~~~~~~~~~~~~~~~~  165 (401)
T 1x13_A           91 NPGTTLVSFIWPAQNPELMQKLAERNVTVMA-----MDSVPRISRAQSLDALSSMANIAGYRAIVEAAHEFGRFFTGQIT  165 (401)
T ss_dssp             CTTCEEEECCCGGGCHHHHHHHHHTTCEEEE-----GGGCCCSGGGGGGCHHHHHHHHHHHHHHHHHHHHCSSCSSCEEE
T ss_pred             cCCCcEEEEecCCCCHHHHHHHHHCCCEEEE-----eehhhhhhhhcccchHHHHHHHHHHHHHHHHHHhcccccCCcee
Confidence            4789999999999999999999999999964     3445554444432222222221  112222     2221100  


Q ss_pred             ----chhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         77 ----HAITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        77 ----~~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                          ..+..+    .|.||+.+++.+++||++|+++|+..
T Consensus       166 ~~g~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~v~D~~~  205 (401)
T 1x13_A          166 AAGKVPPAKVMVIGAGVAGLAAIGAANSLGAIVRAFDTRP  205 (401)
T ss_dssp             TTEEECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCG
T ss_pred             eccCcCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence                001111    27899999999999999999999864

>3ce6_A Adenosylhomocysteinase; protein-substrate complex, dimer of dimers, NAD binding DOMA amino acid insertional region, hydrolase; HET: ADN NAD; 1.60A {Mycobacterium tuberculosis} PDB: 3dhy_A* 2zj0_A* 2ziz_A* 2zj1_A*

Probab=98.56  E-value=4.5e-09  Score=79.72  Aligned_cols=86  Identities=8%  Similarity=-0.026  Sum_probs=60.2

Q ss_pred             EEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc---chhhhh----cc
Q psy15800         12 ISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ---HAITEL----IT   84 (109)
Q Consensus        12 i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~---~~~~~l----~G   84 (109)
                      +-..++|+|++  .++.++|+.++|+++.+. +|+|+.+       |++....+....+ |.+..   ..+..+    .|
T Consensus       215 veetgtGVd~l--~a~~~~Gilv~~~~~vn~-sVae~~~-------r~l~~~~~s~~~g-~~r~~~~~l~GktV~IiG~G  283 (494)
T 3ce6_A          215 TEETTTGVLRL--YQFAAAGDLAFPAINVND-SVTKSKF-------DNKYGTRHSLIDG-INRGTDALIGGKKVLICGYG  283 (494)
T ss_dssp             EECSHHHHHHH--HHHHHTTCCCSCEEECTT-SHHHHTT-------HHHHHHHHHHHHH-HHHHHCCCCTTCEEEEECCS
T ss_pred             EEEeCCChhHH--HHHHHcCCEEEecCCccH-HHHHHHH-------hhhhhhhhhhhHH-HHhccCCCCCcCEEEEEccC
Confidence            34778999998  678899999999999988 9999543       3433333332222 31110   111111    28


Q ss_pred             chHHHHHHHHhhcCCEEEEEcccc
Q psy15800         85 QSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        85 ~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .||+.+|+++++||++|+++|+.+
T Consensus       284 ~IG~~~A~~lka~Ga~Viv~d~~~  307 (494)
T 3ce6_A          284 DVGKGCAEAMKGQGARVSVTEIDP  307 (494)
T ss_dssp             HHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             HHHHHHHHHHHHCCCEEEEEeCCH
Confidence            999999999999999999999864

>1gpj_A Glutamyl-tRNA reductase; tRNA-dependent tetrapyrrole biosynthesis; HET: GMC CIT; 1.95A {Methanopyrus kandleri} SCOP: a.151.1.1 c.2.1.7 d.58.39.1

Probab=98.19  E-value=1.7e-08  Score=74.63  Aligned_cols=100  Identities=7%  Similarity=0.059  Sum_probs=77.3

Q ss_pred             CCceEEEecCccCCcccHHHHh-----hcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcc------
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIK-----SRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQ------   75 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~-----~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~------   75 (109)
                      +.++.|...++|+|++++.+..     +.++.+++.+|. ..+++++.+..++.+.|++....... .+.|...      
T Consensus        80 ~a~~~i~~v~~Glds~~vGe~~Il~qvk~~~~~~~~~G~-~~~~~~~~~~~a~~~~k~v~~~~~~~-~~~~s~a~~av~~  157 (404)
T 1gpj_A           80 EAVRHLFRVASGLESMMVGEQEILRQVKKAYDRAARLGT-LDEALKIVFRRAINLGKRAREETRIS-EGAVSIGSAAVEL  157 (404)
T ss_dssp             HHHHHHHHHHTTTTSSSTTCHHHHHHHHHHHHHHHHHTC-CCHHHHHHHHHHHHHHHHHHHHSSTT-CSCCSHHHHHHHH
T ss_pred             hHhhhheeeccCCCCCcCCcchhHHHHHHHHHHHHHcCC-chHHHHHHHHHHhhhhccCcchhhhc-CCCccHHHHHHHH
Confidence            5688899999999999988776     788999999887 67999999999999999987654333 3455311      


Q ss_pred             -c-----chhhhh----ccchHHHHHHHHhhcCC-EEEEEcccc
Q psy15800         76 -Q-----HAITEL----ITQSDTNHTQRCLASIM-QLVYSTCYN  108 (109)
Q Consensus        76 -~-----~~~~~l----~G~IG~~va~~~~~fg~-~V~~~~r~~  108 (109)
                       .     ..+..+    .|.||+.+++.++.+|+ +|+++||+.
T Consensus       158 a~~~~~~l~g~~VlIiGaG~iG~~~a~~l~~~G~~~V~v~~r~~  201 (404)
T 1gpj_A          158 AERELGSLHDKTVLVVGAGEMGKTVAKSLVDRGVRAVLVANRTY  201 (404)
T ss_dssp             HHHHHSCCTTCEEEEESCCHHHHHHHHHHHHHCCSEEEEECSSH
T ss_pred             HHHHhccccCCEEEEEChHHHHHHHHHHHHHCCCCEEEEEeCCH
Confidence             0     001111    17899999999999999 999999864

>1l7d_A Nicotinamide nucleotide transhydrogenase, subunit alpha 1; transhydrogenase domain I, oxidoreductase; 1.81A {Rhodospirillum rubrum} SCOP: c.2.1.4 c.23.12.2 PDB: 1hzz_A* 1f8g_A 1l7e_A* 1u28_A* 1u2d_A* 1u2g_A* 1xlt_A* 2oo5_A* 2oor_A* 2frd_A* 2fsv_A* 1nm5_A* 2fr8_A* 1ptj_A*

Probab=98.17  E-value=1.1e-06  Score=64.38  Aligned_cols=99  Identities=4%  Similarity=0.018  Sum_probs=59.2

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHc-----CCCCcc------
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIAS-----GTEKSQ------   75 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~-----g~w~~~------   75 (109)
                      |+++++.....+.|+.+++++.++||.+++..- .++..++..+. +|+..+.+ ........     +.|...      
T Consensus        92 ~~~~~i~~~~~~~~~~~~~~~~~~gi~~~~~e~-~~~~~~~~~l~-~l~~~a~~-ag~~av~~~~~~~~~~~~~~~~~~~  168 (384)
T 1l7d_A           92 EGAVLMCHLGALTNRPVVEALTKRKITAYAMEL-MPRISRAQSMD-ILSSQSNL-AGYRAVIDGAYEFARAFPMMMTAAG  168 (384)
T ss_dssp             TTCEEEEECCGGGCHHHHHHHHHTTCEEEEGGG-CCCSGGGGGGC-HHHHHHHH-HHHHHHHHHHHHCSSCSSCEEETTE
T ss_pred             cCCEEEEEecccCCHHHHHHHHHCCCEEEEecc-ccccccccccc-hhhHHHHH-HHHHHHHHHHHHhhhcccchhccCC
Confidence            579999999999999999999999999998421 12212222222 11111111 11111111     222110      


Q ss_pred             cchhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         76 QHAITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        76 ~~~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ...+..+    .|.||+.+++.+++||++|+++|+..
T Consensus       169 ~l~g~~V~ViGaG~iG~~aa~~a~~~Ga~V~~~d~~~  205 (384)
T 1l7d_A          169 TVPPARVLVFGVGVAGLQAIATAKRLGAVVMATDVRA  205 (384)
T ss_dssp             EECCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCS
T ss_pred             CCCCCEEEEECCCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            0011111    27899999999999999999999864

>2eez_A Alanine dehydrogenase; TTHA0216, structural genomic NPPSFA, national project on protein structural and function analyses; 2.71A {Thermus thermophilus}

Probab=97.81  E-value=7.3e-05  Score=54.44  Aligned_cols=100  Identities=13%  Similarity=0.060  Sum_probs=63.9

Q ss_pred             CCCceEEEecCccCCcccHHHHhhcCcEEE---ecCCC-Cc----cchHHHHH--HHHHHHhcCchHhHHHHHcCCCCcc
Q psy15800          6 GENLKVISTFSVGHDHLHLDQIKSRGIRVG---TVGPV-SS----DAVAEFNI--GLAIAVSRRFQQGHNCIASGTEKSQ   75 (109)
Q Consensus         6 ~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~---n~~g~-~~----~~vAE~~l--~~~L~l~R~~~~~~~~~~~g~w~~~   75 (109)
                      .|+.++|.....+.|..+++.+.++||.+.   +.+.. ..    .+++|.+-  +.+++.. .+.....  .++.|...
T Consensus        84 ~~~~~~~~~~~~~~~~~~~~~l~~~gi~~ia~e~~~~~~~~~~~l~~~s~~ag~~av~~a~~-~l~~~~~--g~~~~~~~  160 (369)
T 2eez_A           84 REGLILFTYLHLAADRGLTEAMLRSGVTGIAYETVQLPDGTLPLLVPMSEVAGRMAPQVGAQ-FLEKPKG--GRGVLLGG  160 (369)
T ss_dssp             CTTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTCCCTTTHHHHHHHHHHHHHHHHH-HTSGGGT--SCCCCTTC
T ss_pred             CCCcEEEEEecccCCHHHHHHHHHCCCeEEEeeccccccCCeeecccchHHHHHHHHHHHHH-HHHHhcC--CCceecCC
Confidence            478999999999999999999999999997   44432 11    34455444  3333332 2333321  11223211


Q ss_pred             cc--hhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         76 QH--AITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        76 ~~--~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+  .+..+    .|.||+.+++.++++|++|+++|+..
T Consensus       161 ~~~l~~~~V~ViGaG~iG~~~a~~l~~~Ga~V~~~d~~~  199 (369)
T 2eez_A          161 VPGVAPASVVILGGGTVGTNAAKIALGMGAQVTILDVNH  199 (369)
T ss_dssp             BTBBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEECCH
Confidence            00  01111    17899999999999999999999863

>3h9u_A Adenosylhomocysteinase; NAD CO-factor complex, structural genomics, SGC stockholm, S genomics consortium, SGC, hydrolase, NAD; HET: NAD ADN PG4; 1.90A {Trypanosoma brucei} PDB: 3g1u_A* 1b3r_A* 1k0u_A* 1ky4_A* 2h5l_A* 1xwf_A* 1d4f_A* 1ky5_A* 3nj4_A* 1li4_A* 1a7a_A*

Probab=97.71  E-value=2.1e-05  Score=58.90  Aligned_cols=91  Identities=10%  Similarity=-0.055  Sum_probs=53.6

Q ss_pred             EecCccCCccc-HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHH
Q psy15800         13 STFSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHT   91 (109)
Q Consensus        13 ~~~~~G~d~id-~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va   91 (109)
                      =-.++|+.++. +....+.+|+|.|++.    ++.++.+-....+...+............... ..+---.|.||+.+|
T Consensus       153 EeTttGv~rL~~~~~~g~L~iPVinvnd----svtk~~~Dn~~Gt~~slldgi~ratg~~L~Gk-tVgIiG~G~IG~~vA  227 (436)
T 3h9u_A          153 EETTTGVKNLYKRLQRGKLTIPAMNVND----SVTKSKFDNLYGCRESLVDGIKRATDVMIAGK-TACVCGYGDVGKGCA  227 (436)
T ss_dssp             ECSHHHHHHHHHHHHHTCCCSCEEECTT----SHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTC-EEEEECCSHHHHHHH
T ss_pred             eccCcChHHHHHHHHcCCCCCceEeech----hhhhhhhhccccchHHHHHHHHHhcCCcccCC-EEEEEeeCHHHHHHH
Confidence            34556766653 4455678999999975    45555444444333333222222112121111 111111489999999


Q ss_pred             HHHhhcCCEEEEEcccc
Q psy15800         92 QRCLASIMQLVYSTCYN  108 (109)
Q Consensus        92 ~~~~~fg~~V~~~~r~~  108 (109)
                      ++|++|||+|+++|+.+
T Consensus       228 ~~Lka~Ga~Viv~D~~p  244 (436)
T 3h9u_A          228 AALRGFGARVVVTEVDP  244 (436)
T ss_dssp             HHHHHTTCEEEEECSCH
T ss_pred             HHHHHCCCEEEEECCCh
Confidence            99999999999999853

>3n58_A Adenosylhomocysteinase; ssgcid, hydrolase, structural genomics, seattle structural G center for infectious disease; HET: ADN NAD; 2.39A {Brucella melitensis biovar abortus}

Probab=96.96  E-value=0.0014  Score=49.34  Aligned_cols=88  Identities=10%  Similarity=-0.000  Sum_probs=52.8

Q ss_pred             cCccCCccc-HHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhccchHHHHHHH
Q psy15800         15 FSVGHDHLH-LDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELITQSDTNHTQR   93 (109)
Q Consensus        15 ~~~G~d~id-~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G~IG~~va~~   93 (109)
                      .++|+-++- +...-...+++.|+.    +++..+-+-....+...+............... ..+---.|.||+.+|++
T Consensus       191 TtTGv~rL~~m~~~g~L~~PvinVn----ds~tK~~fDn~yG~~eslvdgI~Ratg~~L~GK-TVgVIG~G~IGr~vA~~  265 (464)
T 3n58_A          191 TTTGVNRLYQLQKKGLLPFPAINVN----DSVTKSKFDNKYGCKESLVDGIRRGTDVMMAGK-VAVVCGYGDVGKGSAQS  265 (464)
T ss_dssp             SHHHHHHHHHHHHHTCCCSCEEECT----TSHHHHTTHHHHHHHHHHHHHHHHHHCCCCTTC-EEEEECCSHHHHHHHHH
T ss_pred             cccchHHHHHHHHcCCCCCCEEeec----cHhhhhhhhhhhcchHHHHHHHHHhcCCcccCC-EEEEECcCHHHHHHHHH
Confidence            455655542 333345678888875    466666666666665555444332222222111 11111148999999999


Q ss_pred             HhhcCCEEEEEccc
Q psy15800         94 CLASIMQLVYSTCY  107 (109)
Q Consensus        94 ~~~fg~~V~~~~r~  107 (109)
                      +++|||+|+++|+.
T Consensus       266 lrafGa~Viv~d~d  279 (464)
T 3n58_A          266 LAGAGARVKVTEVD  279 (464)
T ss_dssp             HHHTTCEEEEECSS
T ss_pred             HHHCCCEEEEEeCC
Confidence            99999999999764

>3gvp_A Adenosylhomocysteinase 3; protein CO-factor complex, hydrolase, NAD, one-carbon metabolism, phosphoprotein; HET: NAD; 2.25A {Homo sapiens} PDB: 3mtg_A*

Probab=96.03  E-value=0.0035  Score=46.89  Aligned_cols=24  Identities=4%  Similarity=-0.215  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.||+.+|+++++|||+|+++|+.
T Consensus       229 G~IGk~vA~~Lra~Ga~Viv~D~d  252 (435)
T 3gvp_A          229 GEVGKGCCAALKAMGSIVYVTEID  252 (435)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            789999999999999999999974

>3ond_A Adenosylhomocysteinase; plant protein, enzyme-substrate complex, NAD cofactor, regul SAM-dependent methylation reactions; HET: NAD ADN; 1.17A {Lupinus luteus} PDB: 3one_A* 3onf_A*

Probab=95.63  E-value=0.0074  Score=45.77  Aligned_cols=24  Identities=0%  Similarity=-0.097  Sum_probs=22.7

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.||+.+|++|+++|++|+++|+.
T Consensus       274 GgIG~aiA~~Laa~GA~Viv~D~~  297 (488)
T 3ond_A          274 GDVGKGCAAALKQAGARVIVTEID  297 (488)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCC
Confidence            789999999999999999999975

>1gtm_A Glutamate dehydrogenase; oxidoreductase, NAD, NADP; 2.20A {Pyrococcus furiosus} SCOP: c.2.1.7 c.58.1.1 PDB: 1bvu_A 1euz_A

Probab=95.37  E-value=0.01  Score=44.11  Aligned_cols=22  Identities=9%  Similarity=-0.084  Sum_probs=21.0

Q ss_pred             cchHHHHHHHHhh-cCCEEEEEc
Q psy15800         84 TQSDTNHTQRCLA-SIMQLVYST  105 (109)
Q Consensus        84 G~IG~~va~~~~~-fg~~V~~~~  105 (109)
                      |+||+.+|+++++ |||+|++++
T Consensus       221 G~VG~~vA~~l~~~~G~kVv~~s  243 (419)
T 1gtm_A          221 GNAGYYLAKIMSEDFGMKVVAVS  243 (419)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEEE
T ss_pred             CHHHHHHHHHHHHhcCCEEEEEe
Confidence            8999999999999 999999994

>1c1d_A L-phenylalanine dehydrogenase; amino acid dehydrogenase, oxidative deamination mechanism, oxidoreductase; HET: PHE NAD; 1.25A {Rhodococcus SP} SCOP: c.2.1.7 c.58.1.1 PDB: 1bw9_A* 1c1x_A* 1bw9_B* 1c1d_B* 1c1x_B* 1bxg_B* 1bxg_A*

Probab=95.03  E-value=0.015  Score=42.41  Aligned_cols=25  Identities=8%  Similarity=-0.031  Sum_probs=23.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|+||+.+|+++++|||+|+++|+.
T Consensus       183 ~GnVG~~~A~~l~~~GakVvvsD~~  207 (355)
T 1c1d_A          183 LGAVGGSLASLAAEAGAQLLVADTD  207 (355)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCC
Confidence            3899999999999999999999875

>2pv7_A T-protein [includes: chorismate mutase (EC 5.4.99 and prephenate dehydrogenase (EC...; 1574749, chorismate mutase type II; HET: MSE TYR NAD; 2.00A {Haemophilus influenzae} SCOP: a.100.1.12 c.2.1.6

Probab=94.14  E-value=0.029  Score=39.33  Aligned_cols=49  Identities=8%  Similarity=-0.171  Sum_probs=28.6

Q ss_pred             chHhHHHHHcCCCCcccchhh----hh-ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         60 FQQGHNCIASGTEKSQQHAIT----EL-ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        60 ~~~~~~~~~~g~w~~~~~~~~----~l-~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ++++...+++..|....+...    -- .|.||..+|+.+...|.+|.++||..
T Consensus         2 ~~~~~~~~~~~~~~~~~~~~~~I~iIGg~G~mG~~la~~l~~~G~~V~~~~~~~   55 (298)
T 2pv7_A            2 MRESYANENQFGFKTINSDIHKIVIVGGYGKLGGLFARYLRASGYPISILDRED   55 (298)
T ss_dssp             -----------CCCCSCTTCCCEEEETTTSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             hhhHHhhhhccCccccCCCCCEEEEEcCCCHHHHHHHHHHHhCCCeEEEEECCc
Confidence            445666777888964433211    12 47899999999999999999999864

>3p2y_A Alanine dehydrogenase/pyridine nucleotide transhy; seattle structural genomics center for infectious disease, S tuberculosis; 1.82A {Mycobacterium smegmatis str}

Probab=92.99  E-value=0.054  Score=39.84  Aligned_cols=25  Identities=0%  Similarity=-0.295  Sum_probs=23.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|..+++.++++|++|+++|++.
T Consensus       193 G~iG~~aa~~a~~lGa~V~v~D~~~  217 (381)
T 3p2y_A          193 GVAGLQALATAKRLGAKTTGYDVRP  217 (381)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEECSSG
T ss_pred             hHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            7899999999999999999999874

>4dio_A NAD(P) transhydrogenase subunit alpha PART 1; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.60A {Sinorhizobium meliloti}

Probab=92.41  E-value=0.095  Score=38.83  Aligned_cols=25  Identities=0%  Similarity=-0.230  Sum_probs=23.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|...++.++++|++|+++|+..
T Consensus       199 G~iG~~aa~~a~~lGa~V~v~D~~~  223 (405)
T 4dio_A          199 GVAGLQAIATARRLGAVVSATDVRP  223 (405)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSST
T ss_pred             cHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            7899999999999999999999874

>3dtt_A NADP oxidoreductase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: NAP; 1.70A {Arthrobacter SP}

Probab=92.30  E-value=0.067  Score=36.35  Aligned_cols=25  Identities=4%  Similarity=-0.198  Sum_probs=23.3

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+|+.|...|.+|++|||..
T Consensus        28 G~mG~alA~~L~~~G~~V~~~~r~~   52 (245)
T 3dtt_A           28 GTVGRTMAGALADLGHEVTIGTRDP   52 (245)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            8999999999999999999999864

>1leh_A Leucine dehydrogenase; oxidoreductase; 2.20A {Lysinibacillus sphaericus} SCOP: c.2.1.7 c.58.1.1

Probab=91.75  E-value=0.11  Score=37.97  Aligned_cols=26  Identities=8%  Similarity=0.034  Sum_probs=23.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|++|+.+|+.|..+|++|+++|+..
T Consensus       181 ~G~VG~~~A~~L~~~GakVvv~D~~~  206 (364)
T 1leh_A          181 LGNVAKALCKKLNTEGAKLVVTDVNK  206 (364)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            38999999999999999999999753

>3fwz_A Inner membrane protein YBAL; TRKA-N domain, E.coli, structural genomics, PSI-2, Pro structure initiative; HET: MSE AMP; 1.79A {Escherichia coli k-12}

Probab=91.14  E-value=0.097  Score=32.37  Aligned_cols=26  Identities=19%  Similarity=0.087  Sum_probs=23.5

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+++.|+..|.+|+++|+.+
T Consensus        15 ~G~~G~~la~~L~~~g~~v~vid~~~   40 (140)
T 3fwz_A           15 YGRVGSLLGEKLLASDIPLVVIETSR   40 (140)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             cCHHHHHHHHHHHHCCCCEEEEECCH
Confidence            38999999999999999999999753

>2g1u_A Hypothetical protein TM1088A; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2; HET: AMP; 1.50A {Thermotoga maritima} PDB: 3l4b_A*

Probab=90.67  E-value=0.19  Score=31.51  Aligned_cols=25  Identities=8%  Similarity=-0.134  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.|+..|.+|+++|+..
T Consensus        28 G~iG~~la~~L~~~g~~V~vid~~~   52 (155)
T 2g1u_A           28 GRLGSLIANLASSSGHSVVVVDKNE   52 (155)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CHHHHHHHHHHHhCCCeEEEEECCH
Confidence            8999999999999999999998754

>3llv_A Exopolyphosphatase-related protein; NAD(P)-binding, rossmann, PSI, M structural genomics; 1.70A {Archaeoglobus fulgidus}

Probab=90.55  E-value=0.12  Score=31.70  Aligned_cols=25  Identities=4%  Similarity=-0.076  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.|...|.+|+++|+.+
T Consensus        15 G~iG~~la~~L~~~g~~V~~id~~~   39 (141)
T 3llv_A           15 EAAGVGLVRELTAAGKKVLAVDKSK   39 (141)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEEESCH
T ss_pred             CHHHHHHHHHHHHCCCeEEEEECCH
Confidence            8999999999999999999999753

>3qsg_A NAD-binding phosphogluconate dehydrogenase-like P; structural genomics, PSI-biology, midwest center for structu genomics; 1.90A {Alicyclobacillus acidocaldarius subsp}

Probab=89.42  E-value=0.22  Score=35.09  Aligned_cols=24  Identities=0%  Similarity=-0.133  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCC-EEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIM-QLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~-~V~~~~r~  107 (109)
                      |.+|..+|+.|...|. +|.+|||.
T Consensus        33 G~mG~~~A~~L~~~G~~~V~~~dr~   57 (312)
T 3qsg_A           33 GEAASAIASGLRQAGAIDMAAYDAA   57 (312)
T ss_dssp             SHHHHHHHHHHHHHSCCEEEEECSS
T ss_pred             cHHHHHHHHHHHHCCCCeEEEEcCC
Confidence            8999999999999999 99999985

>2raf_A Putative dinucleotide-binding oxidoreductase; NP_786167.1, NADP oxidoreductase coenzyme F420-dependent, structural genomics; HET: MSE NAP; 1.60A {Lactobacillus plantarum WCFS1}

Probab=89.05  E-value=0.34  Score=32.08  Aligned_cols=26  Identities=4%  Similarity=-0.081  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|..+|+.+...|.+|.+|||..
T Consensus        27 ~G~mG~~la~~l~~~g~~V~~~~~~~   52 (209)
T 2raf_A           27 KGNMGQAIGHNFEIAGHEVTYYGSKD   52 (209)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECTTC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEcCCH
Confidence            38999999999999999999999875

>3ic5_A Putative saccharopine dehydrogenase; structural genomics, APC63807.2, N-terminal domain, saccharo dehydrogenase, PSI-2; HET: MSE; 2.08A {Ruegeria pomeroyi}

Probab=88.34  E-value=0.22  Score=29.04  Aligned_cols=25  Identities=4%  Similarity=-0.202  Sum_probs=22.7

Q ss_pred             cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASI-MQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg-~~V~~~~r~~  108 (109)
                      |.||+.+++.+...| .+|+.+||..
T Consensus        14 G~iG~~~~~~l~~~g~~~v~~~~r~~   39 (118)
T 3ic5_A           14 GKIGQMIAALLKTSSNYSVTVADHDL   39 (118)
T ss_dssp             SHHHHHHHHHHHHCSSEEEEEEESCH
T ss_pred             CHHHHHHHHHHHhCCCceEEEEeCCH
Confidence            899999999999999 8999998863

>3qha_A Putative oxidoreductase; seattle structural genomics center for infectious disease, S mycobacterium avium 104, rossmann fold; 2.25A {Mycobacterium avium}

Probab=88.15  E-value=0.36  Score=33.58  Aligned_cols=26  Identities=4%  Similarity=-0.185  Sum_probs=24.0

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+|+.+...|.+|.+|||..
T Consensus        23 ~G~mG~~~A~~l~~~G~~V~~~dr~~   48 (296)
T 3qha_A           23 LGNMGAPMATRMTEWPGGVTVYDIRI   48 (296)
T ss_dssp             CSTTHHHHHHHHTTSTTCEEEECSST
T ss_pred             cCHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            38999999999999999999999875

>3h9e_O Glyceraldehyde-3-phosphate dehydrogenase, testis-; oxidoreductase, structural genomics, structural genomics CON SGC, glycolysis, NAD; HET: NAD; 1.72A {Homo sapiens} PDB: 3pfw_O* 2vyn_D* 2vyv_D*

Probab=87.72  E-value=0.39  Score=34.90  Aligned_cols=25  Identities=8%  Similarity=0.175  Sum_probs=22.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEE-Eccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVY-STCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~-~~r~  107 (109)
                      +|+||+.++|.+..++|+|++ .||+
T Consensus        15 FGRIGrlv~R~~~~~~veivainDp~   40 (346)
T 3h9e_O           15 FGRIGRLVLRACMEKGVKVVAVNDPF   40 (346)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CChHHHHHHHHHHhCCCEEEEEeCCC
Confidence            589999999999999999988 6764

>1lss_A TRK system potassium uptake protein TRKA homolog; KTN domain, NAD, RCK domain, potassium transport, potassium channel, KTRA; HET: NAD; 2.30A {Methanocaldococcus jannaschii} SCOP: c.2.1.9

Probab=87.63  E-value=0.31  Score=29.31  Aligned_cols=25  Identities=8%  Similarity=-0.075  Sum_probs=22.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|.+|+.+++.|...|.+|..+|+.
T Consensus        12 ~G~iG~~~a~~L~~~g~~v~~~d~~   36 (140)
T 1lss_A           12 IGRVGYTLAKSLSEKGHDIVLIDID   36 (140)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEECC
Confidence            3899999999999999999999875

>3ktd_A Prephenate dehydrogenase; structural genomics, joint center F structural genomics, JCSG, protein structure initiative; 2.60A {Corynebacterium glutamicum atcc 13032}

Probab=87.59  E-value=0.31  Score=35.12  Aligned_cols=26  Identities=4%  Similarity=-0.188  Sum_probs=23.9

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||..+|+.++..|.+|++|||..
T Consensus        16 ~G~mG~slA~~L~~~G~~V~~~dr~~   41 (341)
T 3ktd_A           16 LGLIGGSLLRDLHAANHSVFGYNRSR   41 (341)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSCH
T ss_pred             ecHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999864

>3doj_A AT3G25530, dehydrogenase-like protein; gamma-hydroxybutyrate dehydrogenase, 4-hydroxybutyrate dehydrogenase; 2.10A {Arabidopsis thaliana}

Probab=87.46  E-value=0.39  Score=33.65  Aligned_cols=25  Identities=4%  Similarity=-0.165  Sum_probs=23.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|..+|+.|...|.+|.+|||..
T Consensus        30 G~mG~~~A~~l~~~G~~V~~~dr~~   54 (310)
T 3doj_A           30 GIMGKAMSMNLLKNGFKVTVWNRTL   54 (310)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSG
T ss_pred             cHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            8999999999999999999999875

>2hmt_A YUAA protein; RCK, KTN, KTR, KTRA, ktrab, membrane protein, ION transporter, symporter, transport protein; HET: NAI; 2.20A {Bacillus subtilis} SCOP: c.2.1.9 PDB: 2hms_A* 2hmu_A* 2hmv_A* 2hmw_A* 1lsu_A*

Probab=87.42  E-value=0.2  Score=30.24  Aligned_cols=24  Identities=0%  Similarity=-0.197  Sum_probs=22.3

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      |.+|+.+++.|...|.+|+.+|+.
T Consensus        15 G~iG~~~a~~l~~~g~~v~~~d~~   38 (144)
T 2hmt_A           15 GRFGGSIVKELHRMGHEVLAVDIN   38 (144)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEESC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCC
Confidence            899999999999999999999875

>3k6j_A Protein F01G10.3, confirmed by transcript evidenc; rossmann fold, oxidoreductase; 2.20A {Caenorhabditis elegans}

Probab=87.36  E-value=0.15  Score=38.38  Aligned_cols=72  Identities=3%  Similarity=-0.210  Sum_probs=41.4

Q ss_pred             cCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccch-hhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         37 VGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHA-ITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        37 ~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~-~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.|.+--.|.|.+..+++...|...+...--..++|....+. ...+    .|.+|..+|..+..-|.+|+.||+..
T Consensus        11 ~~~~~~~~~~~~~~~~~~~a~~~~~~w~~p~~~~~~~~~~~~~i~kVaVIGaG~MG~~IA~~la~aG~~V~l~D~~~   87 (460)
T 3k6j_A           11 STGENLYFQGSEVRSYLMEAHSLAGQWSLPNDRGDHTNSEAYDVNSVAIIGGGTMGKAMAICFGLAGIETFLVVRNE   87 (460)
T ss_dssp             TTSGGGGGCBCHHHHHHHHTTCCTTSCBCSTTSCBTTSCCCCCCCEEEEECCSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             ccccchhhhhHHHHHHHHhHHHhhccccCCCCccccccCCcccCCEEEEECCCHHHHHHHHHHHHCCCeEEEEECcH
Confidence            344455567777777777733322221111111223222111 0111    27899999999999999999999864

>2yjz_A Metalloreductase steap4; oxidoreductase, metabolic syndrome; HET: NAP; 2.20A {Rattus norvegicus}

Probab=87.23  E-value=0.11  Score=34.42  Aligned_cols=26  Identities=8%  Similarity=0.025  Sum_probs=23.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|++|+.+++.+...|.+|.++||..
T Consensus        27 ~G~mG~~la~~L~~~G~~V~~~~r~~   52 (201)
T 2yjz_A           27 TGDFGKSLGLKMLQCGYSVVFGSRNP   52 (201)
Confidence            38999999999999999999999864

>3c85_A Putative glutathione-regulated potassium-efflux S protein KEFB; TRKA domain; HET: AMP; 1.90A {Vibrio parahaemolyticus rimd 2210633}

Probab=87.19  E-value=0.24  Score=31.71  Aligned_cols=25  Identities=8%  Similarity=-0.227  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHhhc-CCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLAS-IMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~f-g~~V~~~~r~~  108 (109)
                      |.+|+.+++.|+.. |.+|+++|+..
T Consensus        48 G~~G~~~a~~L~~~~g~~V~vid~~~   73 (183)
T 3c85_A           48 GRIGTGAYDELRARYGKISLGIEIRE   73 (183)
T ss_dssp             SHHHHHHHHHHHHHHCSCEEEEESCH
T ss_pred             CHHHHHHHHHHHhccCCeEEEEECCH
Confidence            89999999999998 99999999753

>4e12_A Diketoreductase; oxidoreductase, NADH; HET: 1PE; 1.93A {Acinetobacter baylyi} PDB: 4dyd_A* 4e13_A*

Probab=86.62  E-value=0.35  Score=33.47  Aligned_cols=26  Identities=0%  Similarity=-0.218  Sum_probs=23.7

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|..+|+.+...|.+|+.||+..
T Consensus        12 aG~mG~~iA~~la~~G~~V~l~d~~~   37 (283)
T 4e12_A           12 TGVLGSQIAFQTAFHGFAVTAYDINT   37 (283)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSSH
T ss_pred             CCHHHHHHHHHHHhCCCeEEEEeCCH
Confidence            48999999999999999999999864

>3q2o_A Phosphoribosylaminoimidazole carboxylase, ATPase; carboxylates, ATP binding, lyase; 1.96A {Bacillus anthracis} PDB: 3qff_A* 3r5h_A*

Probab=86.60  E-value=0.49  Score=34.04  Aligned_cols=25  Identities=4%  Similarity=-0.215  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.++.+|++|+++|+.+
T Consensus        23 G~~g~~la~aa~~~G~~vi~~d~~~   47 (389)
T 3q2o_A           23 GQLGRMMALAAKEMGYKIAVLDPTK   47 (389)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESST
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeCCC
Confidence            6799999999999999999999753

>1np3_A Ketol-acid reductoisomerase; A DEEP figure-OF-eight knot, C-terminal alpha-helical domain oxidoreductase; 2.00A {Pseudomonas aeruginosa} SCOP: a.100.1.2 c.2.1.6

Probab=86.56  E-value=0.47  Score=33.84  Aligned_cols=25  Identities=8%  Similarity=-0.055  Sum_probs=23.2

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+.+|+.++..|++|+++||..
T Consensus        25 G~mG~alA~~L~~~G~~V~~~~~~~   49 (338)
T 1np3_A           25 GSQGHAHACNLKDSGVDVTVGLRSG   49 (338)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECCTT
T ss_pred             hHHHHHHHHHHHHCcCEEEEEECCh
Confidence            8999999999999999999999864

>4dll_A 2-hydroxy-3-oxopropionate reductase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, oxidoreductase; 2.11A {Polaromonas SP}

Probab=86.53  E-value=0.52  Score=33.18  Aligned_cols=25  Identities=8%  Similarity=-0.158  Sum_probs=23.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+|+.+...|.+|.+|||..
T Consensus        40 G~mG~~~a~~l~~~G~~V~~~dr~~   64 (320)
T 4dll_A           40 GSMGLPMARRLCEAGYALQVWNRTP   64 (320)
T ss_dssp             TTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cHHHHHHHHHHHhCCCeEEEEcCCH
Confidence            8999999999999999999999864

>4ezb_A Uncharacterized conserved protein; structural genomics, protein structure initiative, NEW YORK structural genomix research consortium; 2.10A {Sinorhizobium meliloti}

Probab=86.50  E-value=0.5  Score=33.34  Aligned_cols=25  Identities=4%  Similarity=-0.201  Sum_probs=23.4

Q ss_pred             cchHHHHHHHHhhcC-CEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASI-MQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg-~~V~~~~r~~  108 (109)
                      |.+|..+|+.+...| .+|++|||..
T Consensus        33 G~mG~~lA~~L~~~G~~~V~~~dr~~   58 (317)
T 4ezb_A           33 GEAAQSIAGGLGGRNAARLAAYDLRF   58 (317)
T ss_dssp             SHHHHHHHHHHHTTTCSEEEEECGGG
T ss_pred             cHHHHHHHHHHHHcCCCeEEEEeCCC
Confidence            899999999999999 9999999874

>1pjc_A Protein (L-alanine dehydrogenase); oxidoreductase, NAD; HET: NAD; 2.00A {Phormidium lapideum} SCOP: c.2.1.4 c.23.12.2 PDB: 1pjb_A* 1say_A

Probab=85.72  E-value=0.51  Score=33.94  Aligned_cols=99  Identities=5%  Similarity=-0.037  Sum_probs=53.9

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEec---CCCC-----ccchHHHHH--HHHHHHhcCchHhHHHHHcCCC-Ccc
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTV---GPVS-----SDAVAEFNI--GLAIAVSRRFQQGHNCIASGTE-KSQ   75 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~---~g~~-----~~~vAE~~l--~~~L~l~R~~~~~~~~~~~g~w-~~~   75 (109)
                      +++.++.-....+|.-.++.+.+.|+...|.   |.-.     -.+++|.+-  +.++.... +.....  .+|-+ ..-
T Consensus        86 ~g~~~~~y~~~~~~~~l~~~l~~~gi~~~~~etvp~k~~~~~~l~~~s~~Ag~~a~~~gA~n-t~~~~~--g~G~~l~~l  162 (361)
T 1pjc_A           86 KDQLLFTYLHLAAARELTEQLMRVGLTAIAYETVELPNRSLPLLTPMSIIAGRLSVQFGARF-LERQQG--GRGVLLGGV  162 (361)
T ss_dssp             TTCEEEECCCGGGCHHHHHHHHHHTCEEEEGGGCCCTTSCCTTTHHHHHHHHHHHHHHHHHH-TSGGGT--SCCCCTTCB
T ss_pred             CCCEEEEEeccccCHHHHHHHHHcCCeEEEEeeeEcccCCccccCcchHHHHHHHHHHHHHH-HhhccC--CCceeccCC
Confidence            4555555555555654567788889988763   4311     134444443  33443322 222111  00111 100


Q ss_pred             -cchhhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         76 -QHAITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        76 -~~~~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                       ......+    .|.+|+.+++.++.+|++|+++||..
T Consensus       163 ~~l~~~~VlViGaGgvG~~aa~~a~~~Ga~V~v~dr~~  200 (361)
T 1pjc_A          163 PGVKPGKVVILGGGVVGTEAAKMAVGLGAQVQIFDINV  200 (361)
T ss_dssp             TTBCCCEEEEECCSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CCCCCCEEEEECCCHHHHHHHHHHHhCCCEEEEEeCCH
Confidence             0001111    17899999999999999999999863

>3l6d_A Putative oxidoreductase; structural genomics, protein structure initiative, oxidoredu PSI-2; HET: MSE; 1.90A {Pseudomonas putida}

Probab=85.49  E-value=0.47  Score=33.20  Aligned_cols=26  Identities=12%  Similarity=-0.110  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+|+.+...|.+|++|||..
T Consensus        17 ~G~mG~~~A~~l~~~G~~V~~~dr~~   42 (306)
T 3l6d_A           17 LGAMGTIMAQVLLKQGKRVAIWNRSP   42 (306)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            48999999999999999999999864

>3ggo_A Prephenate dehydrogenase; TYRA, HPP, NADH, alpha-beta, oxidoreductase; HET: NAI ENO; 2.15A {Aquifex aeolicus} PDB: 3ggg_D* 3ggp_A*

Probab=85.08  E-value=0.58  Score=33.04  Aligned_cols=25  Identities=4%  Similarity=-0.190  Sum_probs=23.1

Q ss_pred             cchHHHHHHHHhhcCC--EEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIM--QLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~--~V~~~~r~~  108 (109)
                      |.||..+|+.++..|.  +|++|||..
T Consensus        42 G~mG~slA~~l~~~G~~~~V~~~dr~~   68 (314)
T 3ggo_A           42 GFMGGSFAKSLRRSGFKGKIYGYDINP   68 (314)
T ss_dssp             SHHHHHHHHHHHHTTCCSEEEEECSCH
T ss_pred             CHHHHHHHHHHHhCCCCCEEEEEECCH
Confidence            8999999999999999  999999864

>3g0o_A 3-hydroxyisobutyrate dehydrogenase; NAD(P), valine catabolism, tartaric acid, target 11128H, NYSGXRC, PSI-2, structural genomics; HET: TLA; 1.80A {Salmonella typhimurium}

Probab=85.06  E-value=0.59  Score=32.52  Aligned_cols=26  Identities=8%  Similarity=0.072  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|..+|+.|...|.+|.+|||..
T Consensus        15 ~G~mG~~~a~~l~~~G~~V~~~dr~~   40 (303)
T 3g0o_A           15 LGSMGMGAARSCLRAGLSTWGADLNP   40 (303)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             CCHHHHHHHHHHHHCCCeEEEEECCH
Confidence            48999999999999999999999864

>4gbj_A 6-phosphogluconate dehydrogenase NAD-binding; structural genomics, PSI-biology, midwest center for structu genomics, MCSG; 2.05A {Dyadobacter fermentans}

Probab=84.61  E-value=0.64  Score=32.56  Aligned_cols=26  Identities=15%  Similarity=-0.005  Sum_probs=21.0

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|..|..+|+.|..-|.+|++|||.+
T Consensus        13 LG~MG~~mA~~L~~~G~~V~v~dr~~   38 (297)
T 4gbj_A           13 LGNLGTPIAEILLEAGYELVVWNRTA   38 (297)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEC----
T ss_pred             cHHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            48999999999999999999999875

>3c24_A Putative oxidoreductase; YP_511008.1, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 1.62A {Jannaschia SP}

Probab=84.45  E-value=0.51  Score=32.48  Aligned_cols=25  Identities=12%  Similarity=-0.020  Sum_probs=23.1

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.+...|.+|.+|||..
T Consensus        21 G~mG~~la~~l~~~g~~V~~~~r~~   45 (286)
T 3c24_A           21 GKMGARITRKIHDSAHHLAAIEIAP   45 (286)
T ss_dssp             SHHHHHHHHHHHHSSSEEEEECCSH
T ss_pred             CHHHHHHHHHHHhCCCEEEEEECCH
Confidence            8899999999999999999999863

>1id1_A Putative potassium channel protein; RCK domain, E.coli potassium channel, BK channel, rossmann fold, membrane protein; 2.40A {Escherichia coli} SCOP: c.2.1.9

Probab=84.38  E-value=0.68  Score=28.73  Aligned_cols=25  Identities=4%  Similarity=-0.182  Sum_probs=22.9

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|.+|+.+++.|...|.+|+..|+.
T Consensus        11 ~G~vG~~la~~L~~~g~~V~vid~~   35 (153)
T 1id1_A           11 HSILAINTILQLNQRGQNVTVISNL   35 (153)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEECC
T ss_pred             CCHHHHHHHHHHHHCCCCEEEEECC
Confidence            4899999999999999999999874

>2vns_A Metalloreductase steap3; metal-binding, transmembrane, rossmann fold, transport, cell cycle, transferrin, flavoprotein, alternative splicing; HET: CIT; 2.0A {Homo sapiens} PDB: 2vq3_A*

Probab=83.85  E-value=0.49  Score=31.38  Aligned_cols=26  Identities=12%  Similarity=0.029  Sum_probs=23.3

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+++.+...|.+|.++||..
T Consensus        36 ~G~~G~~la~~l~~~g~~V~~~~r~~   61 (215)
T 2vns_A           36 SGDFARSLATRLVGSGFKVVVGSRNP   61 (215)
T ss_dssp             CSHHHHHHHHHHHHTTCCEEEEESSH
T ss_pred             cCHHHHHHHHHHHHCCCEEEEEeCCH
Confidence            38999999999999999999999863

>3oj0_A Glutr, glutamyl-tRNA reductase; structural genomics, PSI-2, protein structure initiative, MI center for structural genomics, MCSG; HET: MSE SO4; 1.65A {Thermoplasma volcanium}

Probab=83.42  E-value=0.31  Score=30.09  Aligned_cols=25  Identities=0%  Similarity=-0.219  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.+..+|++|..+||..
T Consensus        30 G~iG~~~a~~l~~~g~~v~v~~r~~   54 (144)
T 3oj0_A           30 GMLASEIAPYFSYPQYKVTVAGRNI   54 (144)
T ss_dssp             SHHHHHHGGGCCTTTCEEEEEESCH
T ss_pred             CHHHHHHHHHHHhCCCEEEEEcCCH
Confidence            8999999999999999999999864

>3e8x_A Putative NAD-dependent epimerase/dehydratase; structural genomics, APC7755, NADP, P protein structure initiative; HET: MSE NAP; 2.10A {Bacillus halodurans}

Probab=82.85  E-value=0.91  Score=29.92  Aligned_cols=25  Identities=4%  Similarity=-0.239  Sum_probs=22.8

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+.+++.|..-|.+|++.+|..
T Consensus        31 G~iG~~l~~~L~~~G~~V~~~~R~~   55 (236)
T 3e8x_A           31 GKVARYLLSELKNKGHEPVAMVRNE   55 (236)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             ChHHHHHHHHHHhCCCeEEEEECCh
Confidence            7899999999999999999998864

>1dhr_A Dihydropteridine reductase; oxidoreductase(acting on NADH or NADPH); HET: NAD; 2.30A {Rattus norvegicus} SCOP: c.2.1.2 PDB: 1dir_A* 1hdr_A*

Probab=82.77  E-value=1  Score=29.90  Aligned_cols=26  Identities=8%  Similarity=-0.156  Sum_probs=23.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||+++++.|...|.+|+..+|..
T Consensus        16 s~gIG~~ia~~l~~~G~~V~~~~r~~   41 (241)
T 1dhr_A           16 RGALGSRCVQAFRARNWWVASIDVVE   41 (241)
T ss_dssp             TSHHHHHHHHHHHTTTCEEEEEESSC
T ss_pred             CcHHHHHHHHHHHhCCCEEEEEeCCh
Confidence            36799999999999999999998864

>2uyy_A N-PAC protein; long-chain dehydrogenase, cytokine; HET: NA7; 2.5A {Homo sapiens}

Probab=82.74  E-value=0.76  Score=31.99  Aligned_cols=25  Identities=4%  Similarity=-0.202  Sum_probs=23.1

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+|+.+...|.+|.+|||..
T Consensus        39 G~mG~~~a~~l~~~g~~V~~~~~~~   63 (316)
T 2uyy_A           39 GLMGSGIVSNLLKMGHTVTVWNRTA   63 (316)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSG
T ss_pred             cHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            8999999999999999999999864

>3cky_A 2-hydroxymethyl glutarate dehydrogenase; rossmann fold, two domain enzyme, oxidoreductase; 2.30A {Eubacterium barkeri}

Probab=82.73  E-value=0.77  Score=31.59  Aligned_cols=26  Identities=4%  Similarity=-0.107  Sum_probs=23.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+++.+...|.+|.+|||..
T Consensus        12 ~G~~G~~~a~~l~~~g~~V~~~~~~~   37 (301)
T 3cky_A           12 LGAMGKPMAINLLKEGVTVYAFDLME   37 (301)
T ss_dssp             CCTTHHHHHHHHHHTTCEEEEECSSH
T ss_pred             ccHHHHHHHHHHHHCCCeEEEEeCCH
Confidence            59999999999999999999999863

>1ooe_A Dihydropteridine reductase; structural genomics, PSI, protein structure initiative, southeast collaboratory for structural genomics; HET: MES; 1.65A {Caenorhabditis elegans} SCOP: c.2.1.2

Probab=82.70  E-value=0.92  Score=30.02  Aligned_cols=26  Identities=0%  Similarity=-0.248  Sum_probs=23.3

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||+++++.|...|.+|+..+|..
T Consensus        12 s~gIG~~~a~~l~~~G~~V~~~~r~~   37 (236)
T 1ooe_A           12 KGALGSAILEFFKKNGYTVLNIDLSA   37 (236)
T ss_dssp             TSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CcHHHHHHHHHHHHCCCEEEEEecCc
Confidence            47899999999999999999998864

>3orf_A Dihydropteridine reductase; alpha-beta-alpha sandwich, rossmann fold, oxidoreductase (AC NADH), NADH binding, oxidoreductase; HET: NAD; 2.16A {Dictyostelium discoideum}

Probab=82.64  E-value=1.1  Score=30.09  Aligned_cols=25  Identities=0%  Similarity=-0.169  Sum_probs=22.8

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+++|+.|..-|.+|+..+|..
T Consensus        32 ~gIG~~la~~l~~~G~~V~~~~r~~   56 (251)
T 3orf_A           32 GALGAEVVKFFKSKSWNTISIDFRE   56 (251)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCc
Confidence            5799999999999999999998864

>1hdo_A Biliverdin IX beta reductase; foetal metabolism, HAEM degradation, flavin reductase, diaphorase, green HAEM binding protein; HET: NAP; 1.15A {Homo sapiens} SCOP: c.2.1.2 PDB: 1he2_A* 1he3_A* 1he4_A* 1he5_A*

Probab=82.20  E-value=1  Score=28.62  Aligned_cols=27  Identities=4%  Similarity=-0.059  Sum_probs=23.6

Q ss_pred             hccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         82 LITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        82 l~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      -.|.||+.+++.|..-|.+|++.+|..
T Consensus        11 atG~iG~~l~~~l~~~g~~V~~~~r~~   37 (206)
T 1hdo_A           11 ATGQTGLTTLAQAVQAGYEVTVLVRDS   37 (206)
T ss_dssp             TTSHHHHHHHHHHHHTTCEEEEEESCG
T ss_pred             CCcHHHHHHHHHHHHCCCeEEEEEeCh
Confidence            358899999999999999999998753

>4e21_A 6-phosphogluconate dehydrogenase (decarboxylating; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.30A {Geobacter metallireducens}

Probab=81.99  E-value=0.71  Score=33.34  Aligned_cols=25  Identities=8%  Similarity=-0.093  Sum_probs=23.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+|+.|...|.+|.+|||..
T Consensus        31 G~mG~~~A~~L~~~G~~V~v~dr~~   55 (358)
T 4e21_A           31 GRMGADMVRRLRKGGHECVVYDLNV   55 (358)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             hHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            8999999999999999999999864

>1vpd_A Tartronate semialdehyde reductase; structural genomics, MCSG, protein structure initiative, PSI, midwest center for structural genomics; HET: MSE TLA; 1.65A {Salmonella typhimurium} SCOP: a.100.1.1 c.2.1.6

Probab=81.60  E-value=0.9  Score=31.21  Aligned_cols=26  Identities=15%  Similarity=0.033  Sum_probs=23.5

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+++.+...|.+|.+|||..
T Consensus        13 ~G~~G~~~a~~l~~~g~~V~~~~~~~   38 (299)
T 1vpd_A           13 LGIMGKPMSKNLLKAGYSLVVSDRNP   38 (299)
T ss_dssp             CSTTHHHHHHHHHHTTCEEEEECSCH
T ss_pred             chHHHHHHHHHHHhCCCEEEEEeCCH
Confidence            48999999999999999999999863

>3orq_A N5-carboxyaminoimidazole ribonucleotide synthetas; ATP-grAsp superfamily, ligase,biosynthetic protein; HET: MSE ADP; 2.23A {Staphylococcus aureus subsp} PDB: 3orr_A

Probab=81.59  E-value=1.2  Score=32.07  Aligned_cols=25  Identities=12%  Similarity=-0.116  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.++.+|++|+++|+..
T Consensus        21 G~lg~~la~aa~~lG~~viv~d~~~   45 (377)
T 3orq_A           21 GQLGKMMAQSAQKMGYKVVVLDPSE   45 (377)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCC
Confidence            6899999999999999999999764

>3h7a_A Short chain dehydrogenase; oxidoreductase, PSI-2, NYSGXRC, structural genomics, protein structure initiative; 1.87A {Rhodopseudomonas palustris}

Probab=81.18  E-value=1.1  Score=30.14  Aligned_cols=25  Identities=4%  Similarity=-0.063  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+++|+.|..-|++|+..+|..
T Consensus        17 ~GIG~aia~~l~~~G~~V~~~~r~~   41 (252)
T 3h7a_A           17 DYIGAEIAKKFAAEGFTVFAGRRNG   41 (252)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             chHHHHHHHHHHHCCCEEEEEeCCH
Confidence            5799999999999999999998854

>3tpc_A Short chain alcohol dehydrogenase-related dehydro; structural genomics, PSI-biology, NEW YORK structural genomi research consortium; 2.34A {Sinorhizobium meliloti}

Probab=80.87  E-value=1.4  Score=29.60  Aligned_cols=25  Identities=4%  Similarity=-0.207  Sum_probs=22.7

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+++|+.|..-|++|+..+|..
T Consensus        17 ~gIG~aia~~l~~~G~~V~~~~r~~   41 (257)
T 3tpc_A           17 SGLGAAVTRMLAQEGATVLGLDLKP   41 (257)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            6799999999999999999998764

>2d5c_A AROE, shikimate 5-dehydrogenase; substrate, dimer, structural genomics, NPPSFA, Na project on protein structural and functional analyses; HET: SKM; 1.65A {Thermus thermophilus} PDB: 1wxd_A* 2cy0_A* 2ev9_A*

Probab=80.85  E-value=1.1  Score=30.59  Aligned_cols=25  Identities=0%  Similarity=-0.241  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+++.+..+|++|.++||..
T Consensus       125 G~~g~~~a~~l~~~g~~v~v~~r~~  149 (263)
T 2d5c_A          125 GGAGRAVAFALREAGLEVWVWNRTP  149 (263)
T ss_dssp             SHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             cHHHHHHHHHHHHCCCEEEEEECCH
Confidence            7899999999999999999999864

>4fs3_A Enoyl-[acyl-carrier-protein] reductase [NADPH] FA; rossmann fold, short chain dehydrogenase, NADPH binding, oxidoreductase; HET: 0WD 0WE; 1.80A {Staphylococcus aureus subsp} PDB: 3gr6_A* 3gns_A* 4all_A* 3gnt_A 4alk_A* 4alj_A* 4ali_A* 4alm_A 4aln_A

Probab=80.31  E-value=1.4  Score=29.91  Aligned_cols=24  Identities=8%  Similarity=-0.114  Sum_probs=21.7

Q ss_pred             chHHHHHHHHhhcCCEEEEEcccc
Q psy15800         85 QSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        85 ~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      -||+++|+.|..-|++|+..+|..
T Consensus        19 GIG~aiA~~la~~Ga~Vvi~~r~~   42 (256)
T 4fs3_A           19 SIAFGVAKVLDQLGAKLVFTYRKE   42 (256)
T ss_dssp             CHHHHHHHHHHHTTCEEEEEESSG
T ss_pred             hHHHHHHHHHHHCCCEEEEEECCH
Confidence            499999999999999999998753

>2o23_A HADH2 protein; HSD17B10, schad, ERAB, type II HADH, 2-methyl-3-hydroxybuTyr dehydrogenase, MHBD, structural genomics, structural genomi consortium; HET: NAD GOL; 1.20A {Homo sapiens} SCOP: c.2.1.2 PDB: 1so8_A 1u7t_A* 1e3s_A* 1e3w_B* 1e3w_A* 1e6w_A*

Probab=80.18  E-value=1.5  Score=29.33  Aligned_cols=26  Identities=12%  Similarity=-0.022  Sum_probs=23.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||+++++.|...|.+|+..+|..
T Consensus        21 sggiG~~~a~~l~~~G~~V~~~~r~~   46 (265)
T 2o23_A           21 ASGLGLATAERLVGQGASAVLLDLPN   46 (265)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CChHHHHHHHHHHHCCCEEEEEeCCc
Confidence            36899999999999999999998764

>1uzm_A 3-oxoacyl-[acyl-carrier protein] reductase; beta-ketoacyl reductase, oxidoreductase; 1.49A {Mycobacterium tuberculosis} SCOP: c.2.1.2 PDB: 1uzn_A* 2ntn_A 1uzl_A

Probab=80.18  E-value=1.5  Score=29.30  Aligned_cols=25  Identities=12%  Similarity=-0.079  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+++++.|..-|.+|+..+|..
T Consensus        25 ~gIG~~ia~~l~~~G~~V~~~~r~~   49 (247)
T 1uzm_A           25 RGIGLAIAQRLAADGHKVAVTHRGS   49 (247)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            6799999999999999999998753

>1uay_A Type II 3-hydroxyacyl-COA dehydrogenase; beta oxidation, fatty acid, structural genomi structural genomics/proteomics initiative, RSGI; HET: ADN; 1.40A {Thermus thermophilus} SCOP: c.2.1.2

Probab=80.17  E-value=1.3  Score=29.01  Aligned_cols=26  Identities=8%  Similarity=-0.136  Sum_probs=23.2

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||+++++.|..-|.+|+..+|..
T Consensus        11 sggiG~~la~~l~~~G~~V~~~~r~~   36 (242)
T 1uay_A           11 ASGLGRAAALALKARGYRVVVLDLRR   36 (242)
T ss_dssp             TSHHHHHHHHHHHHHTCEEEEEESSC
T ss_pred             CChHHHHHHHHHHHCCCEEEEEccCc
Confidence            47899999999999999999998764

>2we8_A Xanthine dehydrogenase; oxidoreductase; 2.30A {Mycobacterium smegmatis} PDB: 2we7_A

Probab=80.08  E-value=1.6  Score=31.93  Aligned_cols=25  Identities=4%  Similarity=-0.156  Sum_probs=23.2

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.++++++.+|++|+.+|+..
T Consensus       213 Ghva~ala~~a~~lg~~V~v~D~R~  237 (386)
T 2we8_A          213 IDFAAAVAQQGAFLGYRVTVCDARP  237 (386)
T ss_dssp             STHHHHHHHHHHHTTCEEEEEESCT
T ss_pred             CHHHHHHHHHHHhCCCEEEEECCch
Confidence            7899999999999999999999753

>3d7l_A LIN1944 protein; APC89317, structural genomics, PS protein structure initiative, midwest center for structural genomics, MCSG; 2.06A {Listeria innocua}

Probab=80.03  E-value=1.4  Score=28.12  Aligned_cols=25  Identities=4%  Similarity=-0.064  Sum_probs=22.3

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||+++++.|. -|.+|+..+|..
T Consensus        12 sg~iG~~~~~~l~-~g~~V~~~~r~~   36 (202)
T 3d7l_A           12 SGTLGSAVKERLE-KKAEVITAGRHS   36 (202)
T ss_dssp             TSHHHHHHHHHHT-TTSEEEEEESSS
T ss_pred             CcHHHHHHHHHHH-CCCeEEEEecCc
Confidence            4789999999999 999999998864

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	109
d1dxya2	131	c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproa	2e-10
d1mx3a2	133	c.23.12.1 (A:27-125,A:319-352) Transcription corep	2e-09
d1gdha2	129	c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrog	5e-08
d1j4aa2	134	c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogen	2e-07
d2naca2	186	c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenas	2e-06
d1ygya2	130	c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehy	8e-06
d1qp8a2	121	c.23.12.1 (A:1-82,A:264-302) Putative formate dehy	6e-04
d1gdha1	191	c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyp	0.001
d1mx3a1	193	c.2.1.4 (A:126-318) Transcription corepressor CtbP	0.001
d1dxya1	199	c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydro	0.002
d1j4aa1	197	c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lacto	0.002
d1qp8a1	181	c.2.1.4 (A:83-263) Putative formate dehydrogenase	0.004

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 131

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 51.6 bits (123), Expect = 2e-10
 Identities = 12/57 (21%), Positives = 24/57 (42%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGH 64
            +K ++  +VG D++ +  +K  GIR+  V   +  AV          +     +G 
Sbjct: 68  GIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGE 124

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 133

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 49.2 bits (117), Expect = 2e-09
 Identities = 11/70 (15%), Positives = 25/70 (35%), Gaps = 1/70 (1%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
              + L++I     G D++ +      GI      P +S    + +I +    +R  ++ 
Sbjct: 61  EKFKALRIIVRIGSGFDNIDIKSAGDLGI-AVCNVPAASVYSEQASIEMREEAAREIRRA 119

Query: 64  HNCIASGTEK 73
                  + K
Sbjct: 120 ITGRIPDSLK 129

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 129

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 45.4 bits (107), Expect = 5e-08
 Identities = 21/64 (32%), Positives = 32/64 (50%)

Query: 1   MSSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
           +  R  EN+K IST+S+G DH+ LD  K+RGI+VG     ++ A  +        +   F
Sbjct: 60  VIDRIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALF 119

Query: 61  QQGH 64
               
Sbjct: 120 GGAD 123

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 134

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 43.8 bits (103), Expect = 2e-07
 Identities = 9/56 (16%), Positives = 21/56 (37%), Gaps = 3/56 (5%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRF 60
           A   +  +S  +VG D++ + + K  G ++  V   S        +   +  +   
Sbjct: 66  ADNGITKMSLRNVGVDNIDMAKAKELGFQITNVPVYS---YTTHAVRNMVVKAFDN 118

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]} Length = 186

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

 Score = 41.9 bits (98), Expect = 2e-06
 Identities = 15/71 (21%), Positives = 24/71 (33%), Gaps = 8/71 (11%)

Query: 8   NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAE--------FNIGLAIAVSRR 59
           NLK+  T  +G DH+ L     R + V  V   +S  +            I       R 
Sbjct: 113 NLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRP 172

Query: 60  FQQGHNCIASG 70
            +  +  +  G
Sbjct: 173 IRDEYLIVQGG 183

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]} Length = 130

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

 Score = 39.7 bits (92), Expect = 8e-06
 Identities = 17/67 (25%), Positives = 29/67 (43%)

Query: 4   RAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQG 63
            A   LK+++   VG D++ +D   +RG+ V      +S A A+   G  +A S R    
Sbjct: 60  AAAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALA 119

Query: 64  HNCIASG 70
              +   
Sbjct: 120 GEFVPDA 126

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 121

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 34.6 bits (79), Expect = 6e-04
 Identities = 11/55 (20%), Positives = 16/55 (29%), Gaps = 1/55 (1%)

Query: 5   AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR 59
               LK I   + G DHL  + I       G  G  +          + +   R 
Sbjct: 47  KMPRLKFIQVVTAGLDHLPWESIPPHVTVAGNAGS-NGYGNERVWRQMVMEAVRN 100

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]} Length = 191

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

 Score = 34.1 bits (77), Expect = 0.001
 Identities = 8/29 (27%), Positives = 14/29 (48%)

Query: 42 SDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
          + A AE  + L +  +RR  +G   I + 
Sbjct: 2  TVATAEIAMLLLLGSARRAGEGEKMIRTR 30

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]} Length = 193

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

 Score = 34.3 bits (77), Expect = 0.001
 Identities = 8/40 (20%), Positives = 15/40 (37%)

Query: 43 DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL 82
          +  A+  +   + + RR    H  +  GT       I E+
Sbjct: 1  EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREV 40

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]} Length = 199

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 7/30 (23%), Positives = 14/30 (46%)

Query: 41 SSDAVAEFNIGLAIAVSRRFQQGHNCIASG 70
          S  A+AEF +   + + R   +    + +G
Sbjct: 1  SPAAIAEFALTDTLYLLRNMGKVQAQLQAG 30

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]} Length = 197

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

 Score = 34.0 bits (76), Expect = 0.002
 Identities = 11/71 (15%), Positives = 23/71 (32%), Gaps = 4/71 (5%)

Query: 43  DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITEL----ITQSDTNHTQRCLASI 98
           +A+AE     A  + R+ +     +A    +       E+    +    T H  +    I
Sbjct: 2   NAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQI 61

Query: 99  MQLVYSTCYNQ 109
           M+   +     
Sbjct: 62  MEGFGAKVITY 72

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]} Length = 181

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

 Score = 32.8 bits (73), Expect = 0.004
 Identities = 11/28 (39%), Positives = 15/28 (53%)

Query: 43 DAVAEFNIGLAIAVSRRFQQGHNCIASG 70
          DAVAEF + L +A  +R  Q    +  G
Sbjct: 2  DAVAEFALALLLAPYKRIIQYGEKMKRG 29

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	109
d1ygya2	130	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.89
d1qp8a2	121	Putative formate dehydrogenase {Archaeon Pyrobacul	99.83
d1mx3a2	133	Transcription corepressor CtbP {Human (Homo sapien	99.82
d1dxya2	131	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.81
d2naca2	186	Formate dehydrogenase {Pseudomonas sp., strain 101	99.8
d1sc6a2	132	Phosphoglycerate dehydrogenase {Escherichia coli [	99.74
d1j4aa2	134	D-lactate dehydrogenase {Lactobacillus helveticus	99.71
d1ygya1	184	Phosphoglycerate dehydrogenase {Mycobacterium tube	99.69
d1gdha2	129	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.68
d1j4aa1	197	D-lactate dehydrogenase {Lactobacillus helveticus	99.68
d1dxya1	199	D-2-hydroxyisocaproate dehydrogenase {Lactobacillu	99.68
d1mx3a1	193	Transcription corepressor CtbP {Human (Homo sapien	99.66
d1sc6a1	188	Phosphoglycerate dehydrogenase {Escherichia coli [	99.66
d1qp8a1	181	Putative formate dehydrogenase {Archaeon Pyrobacul	99.62
d1gdha1	191	D-glycerate dehydrogenase {Hyphomicrobium methylov	99.61
d2naca1	188	Formate dehydrogenase {Pseudomonas sp., strain 101	99.56
d1li4a1	163	S-adenosylhomocystein hydrolase {Human (Homo sapie	97.3
d1v8ba1	163	S-adenosylhomocystein hydrolase {Plasmodium falcip	93.9
d2jfga1	93	UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase	92.82
d1pjqa1	113	Siroheme synthase CysG, domain 1 {Salmonella typhi	91.0
d1kjqa2	111	Glycinamide ribonucleotide transformylase PurT, N-	90.66
d1c1da1	201	Phenylalanine dehydrogenase {Rhodococcus sp., M4 [	90.54
d2pv7a2	152	Prephenate dehydrogenase TyrA {Haemophilus influen	90.47
d3etja2	78	N5-carboxyaminoimidazole ribonucleotide synthetase	89.18
d1f0ya2	192	Short chain L-3-hydroxyacyl CoA dehydrogenase {Hum	87.18
d1piwa2	168	Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeas	86.85
d1wdka3	186	Fatty oxidation complex alpha subunit, middle doma	85.1
d1luaa1	191	Methylene-tetrahydromethanopterin dehydrogenase {M	84.86
d1ooea_	235	Dihydropteridin reductase (pteridine reductase) {N	83.87
d1e3ja2	170	Ketose reductase (sorbitol dehydrogenase) {Silverl	83.4
d2o23a1	248	Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Ho	83.3
d1onfa2	117	Glutathione reductase {Plasmodium falciparum [TaxI	83.21
d1v59a2	122	Dihydrolipoamide dehydrogenase {Baker's yeast (Sac	82.9
d1dxla2	123	Dihydrolipoamide dehydrogenase {Garden pea (Pisum	81.77
d1ebda2	117	Dihydrolipoamide dehydrogenase {Bacillus stearothe	81.67
d1o8ca2	77	Hypothetical protein YhdH {Escherichia coli [TaxId	81.59
d1pr9a_	244	Carbonyl reductase {Human (Homo sapiens) [TaxId: 9	81.12
d2ag5a1	245	Dehydrogenase/reductase SDR family member 6, DHRS6	81.05
d1gesa2	116	Glutathione reductase {Escherichia coli [TaxId: 56	80.75
d1h5qa_	260	Mannitol dehydrogenase {Mushroom (Agaricus bisporu	80.64
d1g0oa_	272	1,3,8-trihydroxynaphtalene reductase (THNR, naphto	80.64
d1w6ua_	294	2,4-dienoyl-CoA reductase, mitochondrial (DECR) {H	80.59
d1leha1	230	Leucine dehydrogenase {Bacillus sphaericus [TaxId:	80.58
d1uzma1	237	beta-keto acyl carrier protein reductase {Mycobact	80.43
d1q7ba_	243	beta-keto acyl carrier protein reductase {Escheric	80.16
d1zema1	260	Xylitol dehydrogenase {Gluconobacter oxydans [TaxI	80.02

>d1ygya2 c.23.12.1 (A:3-98,A:283-316) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.89  E-value=2.7e-24  Score=136.29  Aligned_cols=70  Identities=24%  Similarity=0.330  Sum_probs=67.0

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCC
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTE   72 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w   72 (109)
                      |+ .+|+||+|+..|+|+||||+++|+++||.|+|+||+++.+||||+++++|++.|++..+.+.+++|.|
T Consensus        59 l~-~~p~Lk~I~~~g~G~d~IDl~~~~~~gI~V~n~p~~~~~~VAE~~~~l~L~l~R~i~~a~~~vr~g~~  128 (130)
T d1ygya2          59 LA-AAPKLKIVARAGVGLDNVDVDAATARGVLVVNAPTSASTAEAQDRAGTDVAESVRLALAGEFVPDAVN  128 (130)
T ss_dssp             HH-TCTTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSCBHHHHHHHHHHHHHHHHHHHTTCCCTTBCS
T ss_pred             Hh-hcccceEEeeecccccchhHHHHHHCCceEEecCCCCcHHHHHHHHHHHHHHHhhHHHHhhhcccCcc
Confidence            45 68999999999999999999999999999999999999999999999999999999999998888888

>d1qp8a2 c.23.12.1 (A:1-82,A:264-302) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.83  E-value=5.2e-23  Score=128.92  Aligned_cols=75  Identities=19%  Similarity=0.116  Sum_probs=66.4

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhcc
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELIT   84 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~G   84 (109)
                      .+|+||||++.++|+||+|.+.+. ++|.|+|++|+++.+||||+++++|++.|++                  +.--.|
T Consensus        47 ~~~~Lk~i~~~~aG~D~i~~~~~~-~~i~v~n~~g~~~~~vae~~~~~il~~~r~l------------------~i~G~G  107 (121)
T d1qp8a2          47 KMPRLKFIQVVTAGLDHLPWESIP-PHVTVAGNAGSNGYGNERVWRQMVMEAVRNL------------------ITYATG  107 (121)
T ss_dssp             HCTTCCCEEBSSSCCTTSCCTTSC-TTSCEECCCSSSSSSCHHHHHHHHHHHHHHH------------------HHHHTT
T ss_pred             cCCCceEEEecccCcCCCCHHHhc-cCeEEEECCCCChHHHHHHHHHHHHHhcCCE------------------EEEcCC
Confidence            589999999999999999999885 6999999999999999999999999999843                  111249


Q ss_pred             chHHHHHHHHhhcC
Q psy15800         85 QSDTNHTQRCLASI   98 (109)
Q Consensus        85 ~IG~~va~~~~~fg   98 (109)
                      +||+++|+|+++||
T Consensus       108 ~iG~~iA~r~~a~G  121 (121)
T d1qp8a2         108 GRPRNIAKREDYIG  121 (121)
T ss_dssp             SCCSCBCCGGGTC-
T ss_pred             HHHHHHHHHHHhcC
Confidence            99999999999997

>d1mx3a2 c.23.12.1 (A:27-125,A:319-352) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.82  E-value=6.9e-21  Score=120.82  Aligned_cols=70  Identities=17%  Similarity=0.208  Sum_probs=62.1

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCCC
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEK   73 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~   73 (109)
                      |+ .+|+||+|+..++|+||||+++++++||.|+|+||+++ ++|||+++++|++.|++++..+..-.+.|.
T Consensus        60 l~-~~~~Lk~I~~~g~G~d~iD~~~~~~~gI~v~n~p~~~~-~vAE~a~~lil~~~R~i~~a~~g~~~~~~~  129 (133)
T d1mx3a2          60 LE-KFKALRIIVRIGSGFDNIDIKSAGDLGIAVCNVPAASV-YSEQASIEMREEAAREIRRAITGRIPDSLK  129 (133)
T ss_dssp             HT-TCSSCCEEEESSSCCTTBCHHHHHHTTCEEECCCSTTH-CCHHHHHHHHHHHHHHHHHHHHSCTTTTCS
T ss_pred             Hh-hCCCCeEEEEcCCCcccEeeeeheeCCEEEEcCCCCCc-hhHHHHHHHHHHHHhhHHHHHhccccchhh
Confidence            55 68999999999999999999999999999999999977 579999999999999998886655555553

>d1dxya2 c.23.12.1 (A:1-100,A:300-330) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.81  E-value=6.6e-21  Score=120.46  Aligned_cols=62  Identities=19%  Similarity=0.284  Sum_probs=58.1

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHH
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIA   68 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~   68 (109)
                      ++||+|+..|+|+||||+++++++||+|+|+|++++++|||++++++|++.|++.+.++..+
T Consensus        67 ~~Lk~I~~~~vG~d~ID~~~a~~~gI~V~n~P~~~~~aVAE~~~~~~l~l~R~l~~~~~~~e  128 (131)
T d1dxya2          67 YGIKFLTIRNVGTDNIDMTAMKQYGIRLSNVPAYTETAVHNMVYFSLQHLVDFLTKGETSTE  128 (131)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCTTSSHHHHHHHHHHHHHHHHHHHHHSCCTTE
T ss_pred             CCeEEEEEcccccccccccccccceEEEEeCCCCCchhHHHHHHHHHHHHHcchHHHHhhcc
Confidence            58999999999999999999999999999999999999999999999999999988766543

>d2naca2 c.23.12.1 (A:1-147,A:336-374) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.80  E-value=7.8e-21  Score=125.63  Aligned_cols=68  Identities=22%  Similarity=0.263  Sum_probs=65.3

Q ss_pred             CCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHH--------HHHHHHHhcCchHhHHHHHcCCC
Q psy15800          5 AGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFN--------IGLAIAVSRRFQQGHNCIASGTE   72 (109)
Q Consensus         5 ~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~--------l~~~L~l~R~~~~~~~~~~~g~w   72 (109)
                      ++||||+|++.++|+||||++++.++||.|+|+||+++.+||||+        +++++...|++...+..+++|+|
T Consensus       110 ~ap~LKlI~~~g~G~D~VDl~aa~e~gI~V~n~pg~n~~SVAEha~~~~~~~~i~~il~~~r~~~~~~~~v~~G~~  185 (186)
T d2naca2         110 KAKNLKLALTAGIGSDHVDLQSAIDRNVTVAEVTYCNSTTLTAQARYAAGTREILECFFEGRPIRDEYLIVQGGAL  185 (186)
T ss_dssp             HCTTCCEEEESSSCCTTBCHHHHHHTTCEEEECTTTTHCSHHHHHHHHHHHHHHHHHHHHTCCCCGGGEEEETTEE
T ss_pred             cCccceEEEEeccCCccccHHHHHhCCCEEEECCCcCcHHHHHHHHHHHHHHHHHHHHHhccchhhhhhhhhcccc
Confidence            589999999999999999999999999999999999999999999        88999999999999999999988

>d1sc6a2 c.23.12.1 (A:7-107,A:296-326) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.74  E-value=3.3e-19  Score=112.89  Aligned_cols=57  Identities=25%  Similarity=0.223  Sum_probs=50.0

Q ss_pred             cccCCCCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcC
Q psy15800          2 SSRAGENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRR   59 (109)
Q Consensus         2 l~~~~p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~   59 (109)
                      |+ ++|+||+|+..|+|+||||+++|+++||+|+|+|++++.+|||++++++++..|+
T Consensus        64 i~-~~p~Lk~I~~~gvG~D~IDl~aa~~~gI~V~ntp~~~~~svAe~~~lml~~~~~~  120 (132)
T d1sc6a2          64 IN-AAEKLVAIGAFAIGTNQVDLDAAAKRGIPVFNAPFSSTQEAQENIGLEVAGKLIK  120 (132)
T ss_dssp             HH-HCSSCCEEEECSSCCTTBCHHHHHHTTCCEECCTTTCSHHHHHHHHHHHHHHHHH
T ss_pred             hh-ccccceeEEEecccccccCHHHHHhCCCEEEECCCCchhHHHHHHHHHHHHHhhH
Confidence            45 5899999999999999999999999999999999999999999876666544333

>d1j4aa2 c.23.12.1 (A:2-103,A:301-332) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.71  E-value=4e-18  Score=108.01  Aligned_cols=63  Identities=11%  Similarity=0.092  Sum_probs=53.2

Q ss_pred             CCceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHHHHHHHHhcCchHhHHHHHcCCC
Q psy15800          7 ENLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNIGLAIAVSRRFQQGHNCIASGTE   72 (109)
Q Consensus         7 p~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w   72 (109)
                      ++||+|++.|+|+||||++++.++||.|||+|++   ++|||++++||++.|+........++.+|
T Consensus        68 ~~LK~I~~~~vG~d~ID~~aa~~~gI~V~N~P~~---svae~a~~~ml~l~r~~~~~~~~~k~~e~  130 (134)
T d1j4aa2          68 NGITKMSLRNVGVDNIDMAKAKELGFQITNVPVY---SYTTHAVRNMVVKAFDNNLELVEGKEAET  130 (134)
T ss_dssp             TTCCEEEESSSCCTTBCHHHHHHTTCEEECCCCS---CCBHHHHHHHHHHHHHHHHHHHTTCCCSS
T ss_pred             cCeeEEEEccCCcCccCHHHHHhCCeEEEECCCC---cHHHHHHHHHHHHHHHHhHHHhhhhcccC
Confidence            5799999999999999999999999999999987   58999999999999986544433333333

>d1ygya1 c.2.1.4 (A:99-282) Phosphoglycerate dehydrogenase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=99.69  E-value=1.2e-17  Score=110.71  Aligned_cols=68  Identities=22%  Similarity=0.159  Sum_probs=58.7

Q ss_pred             CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         41 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        41 ~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |+.+||||+++++|++.|+++.+++.++++.|.+....+.++.         |+||+++|+++++|||+|++|||+.
T Consensus         1 N~~sVAE~~~~liL~~~R~i~~~~~~~~~~~W~~~~~~~~~l~~k~vgiiG~G~IG~~va~~~~~fg~~v~~~d~~~   77 (184)
T d1ygya1           1 NIHSAAEHALALLLAASRQIPAADASLREHTWKRSSFSGTEIFGKTVGVVGLGRIGQLVAQRIAAFGAYVVAYDPYV   77 (184)
T ss_dssp             SHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCGGGCCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECTTS
T ss_pred             CchHHHHHHHHHHHHHHcCHHHHHHHHHhCCCCccccccccccceeeeeccccchhHHHHHHhhhccceEEeecCCC
Confidence            4678999999999999999999999999999975433333332         7899999999999999999999874

>d1gdha2 c.23.12.1 (A:2-100,A:292-321) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: Flavodoxin-like
superfamily: Formate/glycerate dehydrogenase catalytic domain-like
family: Formate/glycerate dehydrogenases, substrate-binding domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.68  E-value=7.4e-18  Score=106.11  Aligned_cols=56  Identities=36%  Similarity=0.479  Sum_probs=48.1

Q ss_pred             CCC-CceEEEecCccCCcccHHHHhhcCcEEEecCCCCccchHHHHH---HHHHHHhcCc
Q psy15800          5 AGE-NLKVISTFSVGHDHLHLDQIKSRGIRVGTVGPVSSDAVAEFNI---GLAIAVSRRF   60 (109)
Q Consensus         5 ~~p-~Lk~i~~~~~G~d~id~~~~~~~gi~v~n~~g~~~~~vAE~~l---~~~L~l~R~~   60 (109)
                      .+| +||+|++.|+|+||||+++++++||+|+|+||+++++|||+++   .+++++.|..
T Consensus        63 ~~~~~LK~I~~~gvG~d~ID~~~a~~~gI~V~ntpg~~~~aVAE~A~~~~~l~~~l~~~~  122 (129)
T d1gdha2          63 RIPENIKCISTYSIGFDHIDLDACKARGIKVGNAPHGATQAREDMAHQANDLIDALFGGA  122 (129)
T ss_dssp             HSCTTCCEEEEESSCCTTBCHHHHHHTTCEEECCCCSBHHHHHHHHHHHHHHHHHHHTTS
T ss_pred             hhhhcceeeeecccCCccccHHHHHhCCCEEEECCCCCchHHHHHHHHHHHHHHHHhCCC
Confidence            455 7999999999999999999999999999999999999999655   4555555543

>d1j4aa1 c.2.1.4 (A:104-300) D-lactate dehydrogenase {Lactobacillus helveticus [TaxId: 1587]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-lactate dehydrogenase
species: Lactobacillus helveticus [TaxId: 1587]

Probab=99.68  E-value=2.2e-17  Score=110.59  Aligned_cols=67  Identities=12%  Similarity=-0.019  Sum_probs=57.4

Q ss_pred             ccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         42 SDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        42 ~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +++||||+++++|++.|+++.+++.+++++|......+.++.         |+||+++|+++++|||+|++|||+.
T Consensus         1 p~aVAE~~l~~~l~l~r~~~~~~~~~~~~~~~w~~~~g~el~gk~vgIiG~G~IG~~va~~l~~fg~~V~~~d~~~   76 (197)
T d1j4aa1           1 PNAIAEHAAIQAARILRQDKAMDEKVARHDLRWAPTIGREVRDQVVGVVGTGHIGQVFMQIMEGFGAKVITYDIFR   76 (197)
T ss_dssp             HHHHHHHHHHHHHHHHHTHHHHHHHHHTTBCCCTTCCBCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCHHHHHHHHHHHHHHhCcHHHHHHHHhCCCCcCCCcCccccCCeEEEecccccchhHHHhHhhhcccccccCccc
Confidence            468999999999999999999999999998753333344553         7899999999999999999999875

>d1dxya1 c.2.1.4 (A:101-299) D-2-hydroxyisocaproate dehydrogenase {Lactobacillus casei [TaxId: 1582]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-2-hydroxyisocaproate dehydrogenase
species: Lactobacillus casei [TaxId: 1582]

Probab=99.68  E-value=1.3e-17  Score=111.78  Aligned_cols=68  Identities=15%  Similarity=0.084  Sum_probs=58.2

Q ss_pred             CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-chhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         41 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-HAITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        41 ~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      ++++||||+++++|++.|+++.+++.+++|+|.+.. ..+.++.         |+||+++|+++++|||+|++|||+.
T Consensus         1 Sp~aVAE~~l~~iL~l~R~~~~~~~~~~~g~w~~~~~~~~~~l~~ktvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   78 (199)
T d1dxya1           1 SPAAIAEFALTDTLYLLRNMGKVQAQLQAGDYEKAGTFIGKELGQQTVGVMGTGHIGQVAIKLFKGFGAKVIAYDPYP   78 (199)
T ss_dssp             CHHHHHHHHHHHHHHHHTTHHHHHHHHHTTCHHHHTCCCCCCGGGSEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CChHHHHHHHHHHHHHHhCHHHHHHHHHhCCCCcccCcccccccceeeeeeecccccccccccccccceeeeccCCcc
Confidence            357899999999999999999999999999996432 2233443         7999999999999999999999975

>d1mx3a1 c.2.1.4 (A:126-318) Transcription corepressor CtbP {Human (Homo sapiens), Ctbp1 [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Transcription corepressor CtbP
species: Human (Homo sapiens), Ctbp1 [TaxId: 9606]

Probab=99.66  E-value=5.6e-17  Score=108.25  Aligned_cols=66  Identities=14%  Similarity=0.145  Sum_probs=56.7

Q ss_pred             cchHHHHHHHHHHHhcCchHhHHHHHcCCCCccc-------chhhhhc---------cchHHHHHHHHhhcCCEEEEEcc
Q psy15800         43 DAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQ-------HAITELI---------TQSDTNHTQRCLASIMQLVYSTC  106 (109)
Q Consensus        43 ~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~-------~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r  106 (109)
                      ++|||++++++|++.|+++.+++.+++|.|.+..       ..+.++.         |+||+++|+++++|||+|++|||
T Consensus         1 e~VAE~ai~liL~l~R~i~~~~~~~~~g~w~~~~~~~~~~~~~~~eL~gktvgIiG~G~IG~~va~~l~~fg~~v~~~d~   80 (193)
T d1mx3a1           1 EETADSTLCHILNLYRRATWLHQALREGTRVQSVEQIREVASGAARIRGETLGIIGLGRVGQAVALRAKAFGFNVLFYDP   80 (193)
T ss_dssp             HHHHHHHHHHHHHHHHCHHHHHHHHHTTCCCCSHHHHHHHTTTCCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECT
T ss_pred             CcHHHHHHHHHHHHHhCHHHHHHHHHcCCcccccccccccccCceeeeCceEEEeccccccccceeeeeccccceeeccC
Confidence            5899999999999999999999999999996542       1223332         78999999999999999999999


Q ss_pred             cc
Q psy15800        107 YN  108 (109)
Q Consensus       107 ~~  108 (109)
                      +.
T Consensus        81 ~~   82 (193)
T d1mx3a1          81 YL   82 (193)
T ss_dssp             TS
T ss_pred             cc
Confidence            75

>d1sc6a1 c.2.1.4 (A:108-295) Phosphoglycerate dehydrogenase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Phosphoglycerate dehydrogenase
species: Escherichia coli [TaxId: 562]

Probab=99.66  E-value=5.3e-17  Score=107.81  Aligned_cols=68  Identities=16%  Similarity=0.082  Sum_probs=57.0

Q ss_pred             CccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccchhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         41 SSDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHAITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        41 ~~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |+++||||+++++|++.|+++.+++.++++.|.+....+.++.         |+||+++|+++++|||+|++|||+.
T Consensus         1 Na~aVAE~~l~~il~l~R~~~~~~~~~~~~~w~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d1sc6a1           1 NTRSVAELVIGELLLLLRGVPEANAKAHRGVGNKLAAGSFEARGKKLGIIGYGHIGTQLGILAESLGMYVYFYDIEN   77 (188)
T ss_dssp             THHHHHHHHHHHHHHHHHTHHHHHHHHHHTCCC-----CCCSTTCEEEEECCSHHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CCHHHHHHHHHHHHHHHhChHHHHHHHHhCCCcccccccccccceEEEEeecccchhhhhhhcccccceEeeccccc
Confidence            5789999999999999999999999999999976544333332         7899999999999999999999874

>d1qp8a1 c.2.1.4 (A:83-263) Putative formate dehydrogenase {Archaeon Pyrobaculum aerophilum [TaxId: 13773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Putative formate dehydrogenase
species: Archaeon Pyrobaculum aerophilum [TaxId: 13773]

Probab=99.62  E-value=3.4e-16  Score=103.47  Aligned_cols=67  Identities=21%  Similarity=0.106  Sum_probs=57.1

Q ss_pred             ccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccch----hhhh----ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         42 SDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQHA----ITEL----ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        42 ~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~~----~~~l----~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +++||||+++++|++.|++..+.+.+++++|......    +..+    .|+||+.+|+++++|||+|++|||+.
T Consensus         1 A~aVAE~~~~liL~~~R~i~~~~~~~~~~~w~~~~~~~~l~gk~vgIiG~G~IG~~va~~l~~~g~~v~~~d~~~   75 (181)
T d1qp8a1           1 ADAVAEFALALLLAPYKRIIQYGEKMKRGDYGRDVEIPLIQGEKVAVLGLGEIGTRVGKILAALGAQVRGFSRTP   75 (181)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCSCCCCCTTCEEEEESCSTHHHHHHHHHHHTTCEEEEECSSC
T ss_pred             CchHHHHHHHHHHHHHhCHHHHHHHHHcCCCCCCCCCCcccCceEEEeccccccccceeeeeccccccccccccc
Confidence            4789999999999999999999999999999654221    1112    28999999999999999999999975

>d1gdha1 c.2.1.4 (A:101-291) D-glycerate dehydrogenase {Hyphomicrobium methylovorum [TaxId: 84]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: D-glycerate dehydrogenase
species: Hyphomicrobium methylovorum [TaxId: 84]

Probab=99.61  E-value=5.2e-16  Score=103.33  Aligned_cols=67  Identities=18%  Similarity=0.126  Sum_probs=57.3

Q ss_pred             ccchHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc---hhhhhc---------cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         42 SDAVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH---AITELI---------TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        42 ~~~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~---~~~~l~---------G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.+||||+++++|++.|+++++++.+++|.|..+.+   .+.++.         |+||+++|+++++|||+|++|||+.
T Consensus         2 t~AvAE~ai~liL~~~R~i~~~~~~~r~g~w~~~~~~~~~~~~l~g~tvgIiG~G~IG~~va~~l~~fg~~v~~~d~~~   80 (191)
T d1gdha1           2 TVATAEIAMLLLLGSARRAGEGEKMIRTRSWPGWEPLELVGEKLDNKTLGIYGFGSIGQALAKRAQGFDMDIDYFDTHR   80 (191)
T ss_dssp             HHHHHHHHHHHHHHHHTTHHHHHHHHHTTCCCCCCTTTTCBCCCTTCEEEEECCSHHHHHHHHHHHTTTCEEEEECSSC
T ss_pred             CHHHHHHHHHHHHHHHhCHHHHHHHHHcCCCCcCCccccccceecccceEEeecccchHHHHHHHHhhccccccccccc
Confidence            468999999999999999999999999999975532   122332         7899999999999999999999864

>d2naca1 c.2.1.4 (A:148-335) Formate dehydrogenase {Pseudomonas sp., strain 101 [TaxId: 306]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: Formate dehydrogenase
species: Pseudomonas sp., strain 101 [TaxId: 306]

Probab=99.56  E-value=2e-15  Score=100.00  Aligned_cols=65  Identities=15%  Similarity=0.160  Sum_probs=55.2

Q ss_pred             chHHHHHHHHHHHhcCchHhHHHHHcCCCCcccc--hhhhh---------ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         44 AVAEFNIGLAIAVSRRFQQGHNCIASGTEKSQQH--AITEL---------ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        44 ~vAE~~l~~~L~l~R~~~~~~~~~~~g~w~~~~~--~~~~l---------~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +||||+++++|++.|++..++..+++|.|.....  .+.++         .|+||+++|+++++|||+|.+|||+.
T Consensus         2 sVAE~~l~~iL~~~R~~~~~~~~~~~g~w~~~~~~~~~~~l~~~~vgiiG~G~IG~~va~~l~~fg~~v~~~d~~~   77 (188)
T d2naca1           2 SVAEHVVMMILSLVRNYLPSHEWARKGGWNIADCVSHAYDLEAMHVGTVAAGRIGLAVLRRLAPFDVHLHYTDRHR   77 (188)
T ss_dssp             HHHHHHHHHHHHHHTTHHHHHHHHHTTCCCHHHHHTTCCCCTTCEEEEECCSHHHHHHHHHHGGGTCEEEEECSSC
T ss_pred             cHHHHHHHHHHHHHhCHHHHHHHHHhCCCCCcccCCcceeccccceeeccccccchhhhhhhhccCceEEEEeecc
Confidence            7999999999999999999999999999964321  11222         27899999999999999999999864

>d1li4a1 c.2.1.4 (A:190-352) S-adenosylhomocystein hydrolase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.30  E-value=6.4e-05  Score=47.78  Aligned_cols=26  Identities=4%  Similarity=-0.110  Sum_probs=23.8

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +|.||+.+|+++++|||+|+++|+.+
T Consensus        32 yG~iG~g~A~~~rg~G~~V~v~e~dp   57 (163)
T d1li4a1          32 YGDVGKGCAQALRGFGARVIITEIDP   57 (163)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cccccHHHHHHHHhCCCeeEeeeccc
Confidence            38999999999999999999999764

>d1v8ba1 c.2.1.4 (A:235-397) S-adenosylhomocystein hydrolase {Plasmodium falciparum, isolate 3D7 [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Formate/glycerate dehydrogenases, NAD-domain
domain: S-adenosylhomocystein hydrolase
species: Plasmodium falciparum, isolate 3D7 [TaxId: 5833]

Probab=93.90  E-value=0.016  Score=36.33  Aligned_cols=24  Identities=0%  Similarity=-0.136  Sum_probs=21.9

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTC  106 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r  106 (109)
                      +|.+|+.+|++++++|++|++++.
T Consensus        31 YG~vGrG~A~~~rg~Ga~V~V~E~   54 (163)
T d1v8ba1          31 YGDVGKGCASSMKGLGARVYITEI   54 (163)
T ss_dssp             CSHHHHHHHHHHHHHTCEEEEECS
T ss_pred             ccccchhHHHHHHhCCCEEEEEec
Confidence            388999999999999999999864

>d2jfga1 c.5.1.1 (A:1-93) UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: MurCD N-terminal domain
superfamily: MurCD N-terminal domain
family: MurCD N-terminal domain
domain: UDP-N-acetylmuramoyl-L-alanine:D-glutamate ligase MurD
species: Escherichia coli [TaxId: 562]

Probab=92.82  E-value=0.03  Score=31.23  Aligned_cols=25  Identities=8%  Similarity=-0.182  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |..|+.+|+.|..+|++|+++|...
T Consensus        14 G~sG~s~a~~L~~~g~~v~~~D~~~   38 (93)
T d2jfga1          14 GLTGLSCVDFFLARGVTPRVMDTRM   38 (93)
T ss_dssp             SHHHHHHHHHHHHTTCCCEEEESSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEeeCCc
Confidence            7899999999999999999999743

>d1pjqa1 c.2.1.11 (A:1-113) Siroheme synthase CysG, domain 1 {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Siroheme synthase N-terminal domain-like
domain: Siroheme synthase CysG, domain 1
species: Salmonella typhimurium [TaxId: 90371]

Probab=91.00  E-value=0.089  Score=30.11  Aligned_cols=25  Identities=8%  Similarity=-0.037  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |++|.+.++.|..+|++|+++++..
T Consensus        21 G~va~~ka~~ll~~ga~v~v~~~~~   45 (113)
T d1pjqa1          21 GDVAERKARLLLEAGARLTVNALTF   45 (113)
T ss_dssp             SHHHHHHHHHHHHTTBEEEEEESSC
T ss_pred             CHHHHHHHHHHHHCCCeEEEEeccC
Confidence            7899999999999999999998753

>d1kjqa2 c.30.1.1 (A:2-112) Glycinamide ribonucleotide transformylase PurT, N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: Glycinamide ribonucleotide transformylase PurT, N-domain
species: Escherichia coli [TaxId: 562]

Probab=90.66  E-value=0.11  Score=30.10  Aligned_cols=25  Identities=8%  Similarity=0.131  Sum_probs=23.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |+.|+-++.-++.+|.+|+++||..
T Consensus        20 GQL~rMla~aA~~lG~~v~v~d~~~   44 (111)
T d1kjqa2          20 GELGKEVAIECQRLGVEVIAVDRYA   44 (111)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEEESST
T ss_pred             CHHHHHHHHHHHHCCCEEEEEcCCC
Confidence            7899999999999999999999864

>d1c1da1 c.2.1.7 (A:149-349) Phenylalanine dehydrogenase {Rhodococcus sp., M4 [TaxId: 1831]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Phenylalanine dehydrogenase
species: Rhodococcus sp., M4 [TaxId: 1831]

Probab=90.54  E-value=0.091  Score=33.61  Aligned_cols=25  Identities=8%  Similarity=-0.031  Sum_probs=23.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|++|+.+|+.|..+|++|+++|..
T Consensus        35 ~G~VG~~~A~~L~~~Gakvvv~d~d   59 (201)
T d1c1da1          35 LGAVGGSLASLAAEAGAQLLVADTD   59 (201)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEecch
Confidence            4899999999999999999999864

>d2pv7a2 c.2.1.6 (A:92-243) Prephenate dehydrogenase TyrA {Haemophilus influenzae [TaxId: 727]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Prephenate dehydrogenase TyrA
species: Haemophilus influenzae [TaxId: 727]

Probab=90.47  E-value=0.078  Score=31.73  Aligned_cols=26  Identities=8%  Similarity=-0.175  Sum_probs=23.9

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+|+.|+.-|.+|.+||+..
T Consensus        18 ~G~mG~~la~~L~~~G~~V~~~d~~~   43 (152)
T d2pv7a2          18 YGKLGGLFARYLRASGYPISILDRED   43 (152)
T ss_dssp             TSHHHHHHHHHHHTTTCCEEEECTTC
T ss_pred             CCHHHHHHHHHHHHcCCCcEeccccc
Confidence            48999999999999999999999864

>d3etja2 c.30.1.1 (A:1-78) N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: PreATP-grasp domain
superfamily: PreATP-grasp domain
family: BC N-terminal domain-like
domain: N5-carboxyaminoimidazole ribonucleotide synthetase PurK (AIRC), N-domain
species: Escherichia coli [TaxId: 562]

Probab=89.18  E-value=0.16  Score=27.63  Aligned_cols=25  Identities=8%  Similarity=-0.292  Sum_probs=23.2

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |+.|+-++.-++.+|.+|+.+||..
T Consensus        10 GQLgrMl~~Aa~~LG~~v~vldp~~   34 (78)
T d3etja2          10 GQLGRMLRQAGEPLGIAVWPVGLDA   34 (78)
T ss_dssp             SHHHHHHHHHHGGGTEEEEEECTTS
T ss_pred             CHHHHHHHHHHHHcCCEEEEEcCCC
Confidence            7899999999999999999999864

>d1f0ya2 c.2.1.6 (A:12-203) Short chain L-3-hydroxyacyl CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Short chain L-3-hydroxyacyl CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=87.18  E-value=0.15  Score=32.01  Aligned_cols=26  Identities=12%  Similarity=-0.128  Sum_probs=23.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.+|+.+|..+...|.+|+.||+..
T Consensus        12 aG~mG~~iA~~~a~~G~~V~l~D~~~   37 (192)
T d1f0ya2          12 GGLMGAGIAQVAAATGHTVVLVDQTE   37 (192)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSCH
T ss_pred             cCHHHHHHHHHHHhCCCcEEEEECCh
Confidence            38899999999999999999999864

>d1piwa2 c.2.1.1 (A:153-320) Cinnamyl alcohol dehydrogenase, ADH6 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Cinnamyl alcohol dehydrogenase, ADH6
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=86.85  E-value=0.23  Score=30.08  Aligned_cols=25  Identities=8%  Similarity=-0.249  Sum_probs=23.0

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|...++.++.+|++|+++|+..
T Consensus        37 G~vG~~a~q~ak~~G~~vi~~~~~~   61 (168)
T d1piwa2          37 GGIGSMGTLISKAMGAETYVISRSS   61 (168)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEEESSS
T ss_pred             CCcchhHHHHhhhccccccccccch
Confidence            7899999999999999999999864

>d1wdka3 c.2.1.6 (A:311-496) Fatty oxidation complex alpha subunit, middle domain {Pseudomonas fragi [TaxId: 296]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: 6-phosphogluconate dehydrogenase-like, N-terminal domain
domain: Fatty oxidation complex alpha subunit, middle domain
species: Pseudomonas fragi [TaxId: 296]

Probab=85.10  E-value=0.17  Score=31.57  Aligned_cols=25  Identities=0%  Similarity=-0.118  Sum_probs=22.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.+|+.+|..+...|.+|..||+..
T Consensus        13 G~mG~~iA~~~a~~G~~V~l~D~~~   37 (186)
T d1wdka3          13 GIMGGGIAYQSASKGTPILMKDINE   37 (186)
T ss_dssp             HHHHHHHHHHHHHTTCCEEEECSSH
T ss_pred             CHHHHHHHHHHHhCCCeEEEEECCH
Confidence            7899999999999999999999853

>d1luaa1 c.2.1.7 (A:98-288) Methylene-tetrahydromethanopterin dehydrogenase {Methylobacterium extorquens [TaxId: 408]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Methylene-tetrahydromethanopterin dehydrogenase
species: Methylobacterium extorquens [TaxId: 408]

Probab=84.86  E-value=0.34  Score=29.99  Aligned_cols=25  Identities=4%  Similarity=-0.172  Sum_probs=22.8

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |.||+++|+.+...|++|+..+|..
T Consensus        33 gGIG~~ia~~la~~G~~V~~~~r~~   57 (191)
T d1luaa1          33 GPVGMRSAALLAGEGAEVVLCGRKL   57 (191)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             HHHHHHHHHHHHhhccchhhcccch
Confidence            6799999999999999999998863

>d1ooea_ c.2.1.2 (A:) Dihydropteridin reductase (pteridine reductase) {Nematode (Caenorhabditis elegans) [TaxId: 6239]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dihydropteridin reductase (pteridine reductase)
species: Nematode (Caenorhabditis elegans) [TaxId: 6239]

Probab=83.87  E-value=0.36  Score=30.70  Aligned_cols=26  Identities=0%  Similarity=-0.248  Sum_probs=23.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .+.||+++|+.+..-|++|+..||..
T Consensus        11 s~GIG~aia~~l~~~G~~V~~~~~~~   36 (235)
T d1ooea_          11 KGALGSAILEFFKKNGYTVLNIDLSA   36 (235)
T ss_dssp             TSHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CCHHHHHHHHHHHHCCCEEEEEECCc
Confidence            36799999999999999999998864

>d1e3ja2 c.2.1.1 (A:143-312) Ketose reductase (sorbitol dehydrogenase) {Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Ketose reductase (sorbitol dehydrogenase)
species: Silverleaf whitefly (Bemisia argentifolii) [TaxId: 77855]

Probab=83.40  E-value=0.44  Score=28.58  Aligned_cols=26  Identities=8%  Similarity=-0.212  Sum_probs=23.2

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      .|.||...++.++.+|++|+++|+..
T Consensus        35 ~G~vG~~~~~~ak~~Ga~vi~v~~~~   60 (170)
T d1e3ja2          35 AGPIGLVSVLAAKAYGAFVVCTARSP   60 (170)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             ccccchhhHhhHhhhcccccccchHH
Confidence            37899999999999999999998753

>d2o23a1 c.2.1.2 (A:6-253) Type II 3-hydroxyacyl-CoA dehydrogenase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Type II 3-hydroxyacyl-CoA dehydrogenase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=83.30  E-value=0.45  Score=30.35  Aligned_cols=25  Identities=12%  Similarity=-0.012  Sum_probs=22.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|+.|..-|++|+..||..
T Consensus        15 ~GIG~aia~~la~~G~~V~~~~r~~   39 (248)
T d2o23a1          15 SGLGLATAERLVGQGASAVLLDLPN   39 (248)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEECTT
T ss_pred             CHHHHHHHHHHHHCCCEEEEEeCCh
Confidence            4699999999999999999998764

>d1onfa2 c.3.1.5 (A:154-270) Glutathione reductase {Plasmodium falciparum [TaxId: 5833]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Plasmodium falciparum [TaxId: 5833]

Probab=83.21  E-value=0.52  Score=26.96  Aligned_cols=25  Identities=4%  Similarity=-0.307  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |-||-++|..+..+|.+|..+.|..
T Consensus        31 G~iG~E~A~~l~~~g~~Vtlv~~~~   55 (117)
T d1onfa2          31 GYIAVELINVIKRLGIDSYIFARGN   55 (117)
T ss_dssp             SHHHHHHHHHHHTTTCEEEEECSSS
T ss_pred             chHHHHHHHHHHhccccceeeehhc
Confidence            6899999999999999999998753

>d1v59a2 c.3.1.5 (A:161-282) Dihydrolipoamide dehydrogenase {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]

Probab=82.90  E-value=0.56  Score=26.96  Aligned_cols=25  Identities=0%  Similarity=-0.300  Sum_probs=22.3

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |-||-++|..+..+|++|..+.+..
T Consensus        32 G~ig~E~A~~l~~lG~~Vtii~~~~   56 (122)
T d1v59a2          32 GIIGLEMGSVYSRLGSKVTVVEFQP   56 (122)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             CchHHHHHHHHHhhCcceeEEEecc
Confidence            6799999999999999999887653

>d1dxla2 c.3.1.5 (A:153-275) Dihydrolipoamide dehydrogenase {Garden pea (Pisum sativum) [TaxId: 3888]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Garden pea (Pisum sativum) [TaxId: 3888]

Probab=81.77  E-value=0.56  Score=26.97  Aligned_cols=25  Identities=0%  Similarity=-0.311  Sum_probs=22.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |-||-++|..+..+|++|..+.|..
T Consensus        34 G~iglE~A~~~~~~G~~Vtvi~~~~   58 (123)
T d1dxla2          34 GYIGLEMGSVWGRIGSEVTVVEFAS   58 (123)
T ss_dssp             SHHHHHHHHHHHHHTCEEEEECSSS
T ss_pred             chHHHHHHHHHHhcCCeEEEEEEcc
Confidence            6799999999999999999987653

>d1ebda2 c.3.1.5 (A:155-271) Dihydrolipoamide dehydrogenase {Bacillus stearothermophilus [TaxId: 1422]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Dihydrolipoamide dehydrogenase
species: Bacillus stearothermophilus [TaxId: 1422]

Probab=81.67  E-value=0.66  Score=26.19  Aligned_cols=25  Identities=0%  Similarity=-0.278  Sum_probs=22.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |-||-++|..+..+|.+|..+.+..
T Consensus        31 G~ig~E~A~~l~~~G~~Vtlve~~~   55 (117)
T d1ebda2          31 GYIGIELGTAYANFGTKVTILEGAG   55 (117)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CccceeeeeeecccccEEEEEEecc
Confidence            6899999999999999999887653

>d1o8ca2 c.2.1.1 (A:116-192) Hypothetical protein YhdH {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Alcohol dehydrogenase-like, C-terminal domain
domain: Hypothetical protein YhdH
species: Escherichia coli [TaxId: 562]

Probab=81.59  E-value=0.53  Score=25.28  Aligned_cols=25  Identities=8%  Similarity=-0.186  Sum_probs=22.1

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|.+|....+.++.+|++|++..+.
T Consensus        41 sGgVG~~aiQlak~~G~~Vi~~t~s   65 (77)
T d1o8ca2          41 SGGVGSTAVALLHKLGYQVVAVSGR   65 (77)
T ss_dssp             TSHHHHHHHHHHHHTTCCEEEEESC
T ss_pred             CCcHHHHHHHHHHHcCCeEEEEECC
Confidence            3789999999999999999987654

>d1pr9a_ c.2.1.2 (A:) Carbonyl reductase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Carbonyl reductase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.12  E-value=0.56  Score=30.15  Aligned_cols=25  Identities=12%  Similarity=-0.047  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|+.+..-|.+|+..||..
T Consensus        17 ~GIG~aia~~la~~G~~V~~~~r~~   41 (244)
T d1pr9a_          17 KGIGRGTVQALHATGARVVAVSRTQ   41 (244)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CHHHHHHHHHHHHcCCEEEEEECCH
Confidence            5799999999999999999999853

>d2ag5a1 c.2.1.2 (A:1-245) Dehydrogenase/reductase SDR family member 6, DHRS6 {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Dehydrogenase/reductase SDR family member 6, DHRS6
species: Human (Homo sapiens) [TaxId: 9606]

Probab=81.05  E-value=0.57  Score=30.15  Aligned_cols=25  Identities=0%  Similarity=-0.138  Sum_probs=22.6

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .+.||+++|+.|..-|++|+..||.
T Consensus        15 s~GIG~aia~~la~~G~~Vi~~~r~   39 (245)
T d2ag5a1          15 AQGIGQAAALAFAREGAKVIATDIN   39 (245)
T ss_dssp             TSHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CCHHHHHHHHHHHHcCCEEEEEeCC
Confidence            3579999999999999999999875

>d1gesa2 c.3.1.5 (A:147-262) Glutathione reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: FAD/NAD(P)-binding domain
superfamily: FAD/NAD(P)-binding domain
family: FAD/NAD-linked reductases, N-terminal and central domains
domain: Glutathione reductase
species: Escherichia coli [TaxId: 562]

Probab=80.75  E-value=0.75  Score=26.04  Aligned_cols=25  Identities=0%  Similarity=-0.247  Sum_probs=22.8

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      |-+|-++|..++.+|.+|..+++..
T Consensus        30 G~ig~E~A~~l~~~G~~Vtlve~~~   54 (116)
T d1gesa2          30 GYIGVELGGVINGLGAKTHLFEMFD   54 (116)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEECSSS
T ss_pred             ChhhHHHHHHhhccccEEEEEeecc
Confidence            7899999999999999999998764

>d1h5qa_ c.2.1.2 (A:) Mannitol dehydrogenase {Mushroom (Agaricus bisporus) [TaxId: 5341]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Mannitol dehydrogenase
species: Mushroom (Agaricus bisporus) [TaxId: 5341]

Probab=80.64  E-value=0.55  Score=30.38  Aligned_cols=25  Identities=8%  Similarity=-0.140  Sum_probs=22.5

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|+.|..-|++|+..+|..
T Consensus        19 ~GIG~aia~~la~~Ga~V~i~~r~~   43 (260)
T d1h5qa_          19 RGIGLAFTRAVAAAGANVAVIYRSA   43 (260)
T ss_dssp             SHHHHHHHHHHHHTTEEEEEEESSC
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4699999999999999999998764

>d1g0oa_ c.2.1.2 (A:) 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase) {Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 1,3,8-trihydroxynaphtalene reductase (THNR, naphtol reductase)
species: Rice blast fungus (Magnaporthe grisea) [TaxId: 148305]

Probab=80.64  E-value=0.47  Score=30.86  Aligned_cols=24  Identities=0%  Similarity=-0.167  Sum_probs=21.3

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +.||+++|+.|..-|++|+..++.
T Consensus        28 ~GIG~aia~~la~~Ga~Vvi~~~~   51 (272)
T d1g0oa_          28 RGIGREMAMELGRRGCKVIVNYAN   51 (272)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESS
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeCC
Confidence            359999999999999999988765

>d1w6ua_ c.2.1.2 (A:) 2,4-dienoyl-CoA reductase, mitochondrial (DECR) {Human (Homo sapiens), [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: 2,4-dienoyl-CoA reductase, mitochondrial (DECR)
species: Human (Homo sapiens), [TaxId: 9606]

Probab=80.59  E-value=0.59  Score=30.57  Aligned_cols=24  Identities=17%  Similarity=-0.117  Sum_probs=21.9

Q ss_pred             cchHHHHHHHHhhcCCEEEEEccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      +.||+++|+.|..-|++|+..||.
T Consensus        35 ~GIG~aiA~~la~~Ga~Vii~~r~   58 (294)
T d1w6ua_          35 TGLGKGMTTLLSSLGAQCVIASRK   58 (294)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESC
T ss_pred             CHHHHHHHHHHHHcCCEEEEEECC
Confidence            459999999999999999999875

>d1leha1 c.2.1.7 (A:135-364) Leucine dehydrogenase {Bacillus sphaericus [TaxId: 1421]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Aminoacid dehydrogenase-like, C-terminal domain
domain: Leucine dehydrogenase
species: Bacillus sphaericus [TaxId: 1421]

Probab=80.58  E-value=0.61  Score=30.22  Aligned_cols=25  Identities=8%  Similarity=0.025  Sum_probs=23.0

Q ss_pred             ccchHHHHHHHHhhcCCEEEEEccc
Q psy15800         83 ITQSDTNHTQRCLASIMQLVYSTCY  107 (109)
Q Consensus        83 ~G~IG~~va~~~~~fg~~V~~~~r~  107 (109)
                      .|++|+.+|+.|...|++|++.|..
T Consensus        47 ~GnVG~~~a~~L~~~Gakvv~~d~~   71 (230)
T d1leha1          47 LGNVAKALCKKLNTEGAKLVVTDVN   71 (230)
T ss_dssp             CSHHHHHHHHHHHHTTCEEEEECSC
T ss_pred             CCHHHHHHHHHHHHCCCEEEeeccc
Confidence            4899999999999999999999864

>d1uzma1 c.2.1.2 (A:9-245) beta-keto acyl carrier protein reductase {Mycobacterium tuberculosis [TaxId: 1773]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Mycobacterium tuberculosis [TaxId: 1773]

Probab=80.43  E-value=0.69  Score=29.64  Aligned_cols=25  Identities=12%  Similarity=-0.079  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|+.|..-|++|+..+|..
T Consensus        17 ~GIG~aia~~la~~Ga~V~~~~r~~   41 (237)
T d1uzma1          17 RGIGLAIAQRLAADGHKVAVTHRGS   41 (237)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSS
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCc
Confidence            4699999999999999999998854

>d1q7ba_ c.2.1.2 (A:) beta-keto acyl carrier protein reductase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: beta-keto acyl carrier protein reductase
species: Escherichia coli [TaxId: 562]

Probab=80.16  E-value=0.44  Score=30.72  Aligned_cols=25  Identities=4%  Similarity=-0.080  Sum_probs=22.6

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|++|..-|++|+..+|..
T Consensus        14 ~GIG~a~a~~l~~~G~~Vv~~~r~~   38 (243)
T d1q7ba_          14 RGIGRAIAETLAARGAKVIGTATSE   38 (243)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESSH
T ss_pred             CHHHHHHHHHHHHcCCEEEEEeCCH
Confidence            5799999999999999999998753

>d1zema1 c.2.1.2 (A:3-262) Xylitol dehydrogenase {Gluconobacter oxydans [TaxId: 442]}

class: Alpha and beta proteins (a/b)
fold: NAD(P)-binding Rossmann-fold domains
superfamily: NAD(P)-binding Rossmann-fold domains
family: Tyrosine-dependent oxidoreductases
domain: Xylitol dehydrogenase
species: Gluconobacter oxydans [TaxId: 442]

Probab=80.02  E-value=0.44  Score=30.94  Aligned_cols=25  Identities=4%  Similarity=-0.121  Sum_probs=22.4

Q ss_pred             cchHHHHHHHHhhcCCEEEEEcccc
Q psy15800         84 TQSDTNHTQRCLASIMQLVYSTCYN  108 (109)
Q Consensus        84 G~IG~~va~~~~~fg~~V~~~~r~~  108 (109)
                      +.||+++|+.|...|++|+..||..
T Consensus        15 ~GIG~aia~~la~~Ga~V~~~~r~~   39 (260)
T d1zema1          15 GNIGLATALRLAEEGTAIALLDMNR   39 (260)
T ss_dssp             SHHHHHHHHHHHHTTCEEEEEESCH
T ss_pred             CHHHHHHHHHHHHCCCEEEEEECCH
Confidence            4699999999999999999998753