Psyllid ID: psy15816

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150-------160-------170-
Protein Sequence
MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEAEPLKKISS
Secondary Structure (PSIPRED)
cccEEEEcccccEEEEcHHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHHHHHHHHHHHHHHHccccccccccccccHHHHHHHHHHHHHHHHHHHHHHHHEEcccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccccccccccccHHHHHHHccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEcccccEEEEHHHHHHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEEEEEEEcccHHHccccEccccccHcHHHHHHHHHHHHHcHHccHcHHEHHHEccccccccHHHHHHHHHHHHHHHHHHHHHHHHHccccccccccccccccccccccccccHHcccc
Coil and Loop (DISEMBL)
mdckiiytgedpIFAVAMFTLALTFNGAVtagylgngldiapnfsedpIFAVAMFTLALTFNGAVtagylgngldiapnfsgtIFGLANTLssfggfvssHIVGvltdgdkvrhfrpwQYVFMVLTTTYTVGAIVFLIFgtgqlqpwntpkisdDVELAKKEaeplkkiss
Flexible Loop (DISEMBL)
MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGtgqlqpwntpkISDDVELAkkeaeplkkiss
Low Complexity Region (SEG)
MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVelakkeaeplkkISS
Disordered region (IsUnstruct)
**CKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNT**********************
Disordered Region (DISOPRED)
*DCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN***********************
Disordered Region (DISEMBL)
MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKK**********
Disordered Region (DISPRO)
*DCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL***************************
Transmembrane Helix (TMHMM)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
ooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
TM Helix, Signal Peptide (Phobius)
iiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHoooooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MDCKIIYTGEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEAEPLKKISS
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	171	2.2.26 [Sep-21-2011]
Q5W8I8	584	Vesicular glutamate trans	no	N/A	0.637	0.186	0.339	2e-13
Q03567	493	Uncharacterized transport	yes	N/A	0.742	0.257	0.314	4e-13
Q05B21	576	Vesicular glutamate trans	no	N/A	0.596	0.177	0.333	6e-13
Q6INC8	576	Vesicular glutamate trans	N/A	N/A	0.637	0.189	0.330	7e-13
Q62634	560	Vesicular glutamate trans	yes	N/A	0.614	0.187	0.324	1e-12
A4FV52	560	Vesicular glutamate trans	yes	N/A	0.614	0.187	0.324	2e-12
Q3TXX4	560	Vesicular glutamate trans	yes	N/A	0.614	0.187	0.324	2e-12
A6QLI1	582	Vesicular glutamate trans	no	N/A	0.596	0.175	0.333	2e-12
Q9P2U7	560	Vesicular glutamate trans	yes	N/A	0.614	0.187	0.324	2e-12
Q9P2U8	582	Vesicular glutamate trans	no	N/A	0.596	0.175	0.333	2e-12

>sp|Q5W8I8|VGL2A_DANRE Vesicular glutamate transporter 2.1 OS=Danio rerio GN=slc17a6b PE=2 SV=2

 Score = 75.5 bits (184), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 38/112 (33%), Positives = 63/112 (56%), Gaps = 3/112 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 405 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIV 464

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
           G +T   K R    WQYVF++ +  +  G I + IF +G+ QPW  P+++ D
Sbjct: 465 GAMTK-HKTR--EEWQYVFLIASLVHYGGVIFYGIFASGEKQPWADPELTSD 513

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. Required for glutamate release by retinotectal synapses and visual acuity.
Danio rerio (taxid: 7955)

>sp|Q03567|YLD2_CAEEL Uncharacterized transporter C38C10.2 OS=Caenorhabditis elegans GN=C38C10.2 PE=1 SV=2

 Score = 73.9 bits (180), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 44/140 (31%), Positives = 69/140 (49%), Gaps = 13/140 (9%)

Query: 29  VTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLA 88
           V +GY G G D+           +   T  +  +G   AG++ N L+IAP FSGT+ G  
Sbjct: 362 VASGYCGCGQDV---------LVIIFITCGMAISGLQYAGFVVNYLEIAPPFSGTVMGTG 412

Query: 89  NTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148
           NT+S+  G +S  +   LT          WQ V  +     T+GA++F IF +G++QPW 
Sbjct: 413 NTISALAGIISPAVSSYLTPNGTQEE---WQMVLWLTAGILTIGALLFSIFASGEVQPWA 469

Query: 149 TPKISDDVELAK-KEAEPLK 167
                +  E+A  +E E ++
Sbjct: 470 KLTAEEGHEMAPLREGEKIE 489

Caenorhabditis elegans (taxid: 6239)

>sp|Q05B21|VGLU1_XENTR Vesicular glutamate transporter 1 OS=Xenopus tropicalis GN=slc17a7 PE=2 SV=1

 Score = 73.6 bits (179), Expect = 6e-13,   Method: Composition-based stats.
 Identities = 35/105 (33%), Positives = 60/105 (57%), Gaps = 3/105 (2%)

Query: 51  AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
           A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T   
Sbjct: 404 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIVGAMT--- 460

Query: 111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
           K +    WQYVF++ +  +  G + + IF +G+ QPW  P+ + D
Sbjct: 461 KHKTREEWQYVFLIASLVHYGGVLFYGIFASGEKQPWAEPEETSD 505

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus tropicalis (taxid: 8364)

>sp|Q6INC8|VGLU1_XENLA Vesicular glutamate transporter 1 OS=Xenopus laevis GN=slc17a7 PE=2 SV=1

 Score = 73.2 bits (178), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 37/112 (33%), Positives = 62/112 (55%), Gaps = 3/112 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 397 YSHSRGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIV 456

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
           G +T   K R    WQYVF++ +  +  G + + IF +G+ QPW  P+ + D
Sbjct: 457 GAMTK-HKTR--EEWQYVFLIASLVHYGGVVFYGIFASGEKQPWAEPEETSD 505

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells.

Xenopus laevis (taxid: 8355)

>sp|Q62634|VGLU1_RAT Vesicular glutamate transporter 1 OS=Rattus norvegicus GN=Slc17a7 PE=1 SV=1

 Score = 72.4 bits (176), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 397 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIV 456

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
           G +T   K +    WQYVF++ +  +  G I + +F +G+ QPW  P+
Sbjct: 457 GAMT---KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPE 501

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Rattus norvegicus (taxid: 10116)

>sp|A4FV52|VGLU1_BOVIN Vesicular glutamate transporter 1 OS=Bos taurus GN=SLC17A7 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 397 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIV 456

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
           G +T   K +    WQYVF++ +  +  G I + +F +G+ QPW  P+
Sbjct: 457 GAMT---KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPE 501

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Bos taurus (taxid: 9913)

>sp|Q3TXX4|VGLU1_MOUSE Vesicular glutamate transporter 1 OS=Mus musculus GN=Slc17a7 PE=2 SV=2

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 397 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIV 456

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
           G +T   K +    WQYVF++ +  +  G I + +F +G+ QPW  P+
Sbjct: 457 GAMT---KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPE 501

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Mus musculus (taxid: 10090)

>sp|A6QLI1|VGLU2_BOVIN Vesicular glutamate transporter 2 OS=Bos taurus GN=SLC17A6 PE=2 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 51  AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
           A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T   
Sbjct: 412 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMT--- 468

Query: 111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
           K +    WQYVF++    +  G I + IF +G+ QPW  P+ + +
Sbjct: 469 KNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE 513

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Bos taurus (taxid: 9913)

>sp|Q9P2U7|VGLU1_HUMAN Vesicular glutamate transporter 1 OS=Homo sapiens GN=SLC17A7 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Composition-based stats.
 Identities = 35/108 (32%), Positives = 60/108 (55%), Gaps = 3/108 (2%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct: 397 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIV 456

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
           G +T   K +    WQYVF++ +  +  G I + +F +G+ QPW  P+
Sbjct: 457 GAMT---KHKTREEWQYVFLIASLVHYGGVIFYGVFASGEKQPWAEPE 501

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Homo sapiens (taxid: 9606)

>sp|Q9P2U8|VGLU2_HUMAN Vesicular glutamate transporter 2 OS=Homo sapiens GN=SLC17A6 PE=1 SV=1

 Score = 72.0 bits (175), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 35/105 (33%), Positives = 59/105 (56%), Gaps = 3/105 (2%)

Query: 51  AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
           A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T   
Sbjct: 412 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMT--- 468

Query: 111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
           K +    WQYVF++    +  G I + IF +G+ QPW  P+ + +
Sbjct: 469 KNKSREEWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPEETSE 513

Mediates the uptake of glutamate into synaptic vesicles at presynaptic nerve terminals of excitatory neural cells. May also mediate the transport of inorganic phosphate.

Homo sapiens (taxid: 9606)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
312381697	150	hypothetical protein AND_05949 [Anophele	0.713	0.813	0.577	1e-33
195437382	494	GK24471 [Drosophila willistoni] gi|19416	0.684	0.236	0.611	1e-32
189240168	472	PREDICTED: similar to sodium-dependent p	0.812	0.294	0.510	1e-32
270012290	471	hypothetical protein TcasGA2_TC006413 [T	0.812	0.295	0.510	1e-32
157113576	527	sodium-dependent phosphate transporter [	0.707	0.229	0.585	6e-32
170032365	492	sodium-dependent phosphate transporter [	0.707	0.245	0.588	7e-32
357620735	459	sodium-dependent phosphate transporter [	0.690	0.257	0.558	2e-31
194766031	501	GF23558 [Drosophila ananassae] gi|190617	0.684	0.233	0.603	3e-31
195148128	494	GL18642 [Drosophila persimilis] gi|19410	0.684	0.236	0.587	4e-31
198474532	494	GA15786 [Drosophila pseudoobscura pseudo	0.684	0.236	0.587	4e-31

>gi|312381697|gb|EFR27386.1| hypothetical protein AND_05949 [Anopheles darlingi]

 Score =  147 bits (372), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 71/123 (57%), Positives = 93/123 (75%), Gaps = 1/123 (0%)

Query: 46  EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGV 105
           E+  +AVA+FTL+L  NGAVTAGYLGNGLDIAPNFSGTIFG+ANTLSSFGGFVS+++VGV
Sbjct: 15  ENRTWAVAIFTLSLFLNGAVTAGYLGNGLDIAPNFSGTIFGMANTLSSFGGFVSAYMVGV 74

Query: 106 LTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEAEP 165
           LT+ +  + +  WQ VF +L   Y VG+  +++ GTG+LQ WN P   DD ++  +E  P
Sbjct: 75  LTN-ENPKSYAQWQIVFWILAVIYIVGSSAYVLMGTGELQAWNNPPEKDDAKVETEEGVP 133

Query: 166 LKK 168
           L +
Sbjct: 134 LNE 136

Source: Anopheles darlingi

Species: Anopheles darlingi

Genus: Anopheles

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195437382|ref|XP_002066619.1| GK24471 [Drosophila willistoni] gi|194162704|gb|EDW77605.1| GK24471 [Drosophila willistoni]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 77/126 (61%), Positives = 93/126 (73%), Gaps = 9/126 (7%)

Query: 47  DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106
           D  ++V +F+LAL F+GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF+S+ +VG L
Sbjct: 372 DATWSVTIFSLALFFHGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFLSTWMVGAL 431

Query: 107 TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP----KISDDVELAKKE 162
           T  DK   F  WQ VF +L  TY  GA+VF+  G+G+LQPWN P    KISD   + ++E
Sbjct: 432 TYHDK--SFHQWQIVFWILAATYIAGALVFVAIGSGELQPWNNPPERKKISD---VTQEE 486

Query: 163 AEPLKK 168
             PLK 
Sbjct: 487 GVPLKN 492

Source: Drosophila willistoni

Species: Drosophila willistoni

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|189240168|ref|XP_975071.2| PREDICTED: similar to sodium-dependent phosphate transporter [Tribolium castaneum]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 101/147 (68%), Gaps = 8/147 (5%)

Query: 22  ALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFS 81
           A T    +T G+L   + I      DP+  V +FT +L FNGAVTAGYL NGLDIAPNFS
Sbjct: 327 AFTTFAVLTPGFL---MIIQAFLGMDPVITVVVFTASLFFNGAVTAGYLSNGLDIAPNFS 383

Query: 82  GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141
           GTIFG+ANTLSSFGG++S+ IV +LT  ++   F  W+YVF +L  TY  GA+V+L+ GT
Sbjct: 384 GTIFGMANTLSSFGGWLSTKIVAILTKDEQT--FEQWRYVFWILVGTYATGALVYLLLGT 441

Query: 142 GQLQPWNTPKISDDVELAKKEAEPLKK 168
           G+LQ WN+   +D+    +KE +PL++
Sbjct: 442 GELQKWNS---ADEEVRVEKEMQPLRR 465

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270012290|gb|EFA08738.1| hypothetical protein TcasGA2_TC006413 [Tribolium castaneum]

 Score =  144 bits (363), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 75/147 (51%), Positives = 101/147 (68%), Gaps = 8/147 (5%)

Query: 22  ALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFS 81
           A T    +T G+L   + I      DP+  V +FT +L FNGAVTAGYL NGLDIAPNFS
Sbjct: 326 AFTTFAVLTPGFL---MIIQAFLGMDPVITVVVFTASLFFNGAVTAGYLSNGLDIAPNFS 382

Query: 82  GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT 141
           GTIFG+ANTLSSFGG++S+ IV +LT  ++   F  W+YVF +L  TY  GA+V+L+ GT
Sbjct: 383 GTIFGMANTLSSFGGWLSTKIVAILTKDEQT--FEQWRYVFWILVGTYATGALVYLLLGT 440

Query: 142 GQLQPWNTPKISDDVELAKKEAEPLKK 168
           G+LQ WN+   +D+    +KE +PL++
Sbjct: 441 GELQKWNS---ADEEVRVEKEMQPLRR 464

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|157113576|ref|XP_001652004.1| sodium-dependent phosphate transporter [Aedes aegypti] gi|108877650|gb|EAT41875.1| AAEL006514-PA [Aedes aegypti]

 Score =  142 bits (357), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 72/123 (58%), Positives = 89/123 (72%), Gaps = 2/123 (1%)

Query: 46  EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGV 105
           E+  +AV +FTLAL  NGAVTAGYLGNGLDIAPNFSGTIFG+ANTLSSFGGFVS+++VGV
Sbjct: 395 ENRSWAVGIFTLALFLNGAVTAGYLGNGLDIAPNFSGTIFGMANTLSSFGGFVSAYMVGV 454

Query: 106 LTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEAEP 165
           LT+ ++   +  WQ VF +L   Y VG+  +LI GTG+LQPWN P          +E  P
Sbjct: 455 LTNDNQT--YGQWQIVFWILAIIYIVGSTAYLIMGTGELQPWNNPPERGVNNRETEEGVP 512

Query: 166 LKK 168
           L +
Sbjct: 513 LNQ 515

Source: Aedes aegypti

Species: Aedes aegypti

Genus: Aedes

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|170032365|ref|XP_001844052.1| sodium-dependent phosphate transporter [Culex quinquefasciatus] gi|167872338|gb|EDS35721.1| sodium-dependent phosphate transporter [Culex quinquefasciatus]

 Score =  142 bits (357), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 73/124 (58%), Positives = 91/124 (73%), Gaps = 3/124 (2%)

Query: 46  EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGV 105
           E+  +AV +FTLAL  NGAVTAGYLGNGLDIAPNFSGTIFG+ANTLSSFGGFVS+++VGV
Sbjct: 365 ENRSWAVGIFTLALFLNGAVTAGYLGNGLDIAPNFSGTIFGMANTLSSFGGFVSAYMVGV 424

Query: 106 LTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVE-LAKKEAE 164
           LT+ ++   +  WQ VF +L   Y VG+  +LI GTG+LQPWN P     +E    +E  
Sbjct: 425 LTNDNQT--YGQWQIVFWILAVIYIVGSSAYLIMGTGELQPWNNPPEKGAIENRETEEGV 482

Query: 165 PLKK 168
           PL +
Sbjct: 483 PLNQ 486

Source: Culex quinquefasciatus

Species: Culex quinquefasciatus

Genus: Culex

Family: Culicidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|357620735|gb|EHJ72819.1| sodium-dependent phosphate transporter [Danaus plexippus]

 Score =  140 bits (353), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 67/120 (55%), Positives = 91/120 (75%), Gaps = 2/120 (1%)

Query: 44  FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
           F  + ++++A+FT ALT NGAVTAGYLGNGLDIAP FSGTIFG+ANTLSSFGG++S+ +V
Sbjct: 342 FGYERVWSIAIFTAALTINGAVTAGYLGNGLDIAPKFSGTIFGIANTLSSFGGWLSTFMV 401

Query: 104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDDVELAKKEA 163
           G LT  +    +  WQ VF +L  TY  GA+VFL+FG+G+LQPW+ P + +   L +++A
Sbjct: 402 GELTKHENT--YEQWQIVFFILAGTYACGALVFLMFGSGELQPWSKPVVKELTPLREQQA 459

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|194766031|ref|XP_001965128.1| GF23558 [Drosophila ananassae] gi|190617738|gb|EDV33262.1| GF23558 [Drosophila ananassae]

 Score =  139 bits (351), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 76/126 (60%), Positives = 91/126 (72%), Gaps = 9/126 (7%)

Query: 47  DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106
           D  ++V +F+LAL  +GAVTAGYLGNGLDIAPNF GTIFGLANTLSSFGGF+S+ +VG L
Sbjct: 379 DSTWSVTIFSLALFAHGAVTAGYLGNGLDIAPNFGGTIFGLANTLSSFGGFLSTWMVGAL 438

Query: 107 TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP----KISDDVELAKKE 162
           T  DK   F  WQ VF +L  TY  GA+VF I G+G+LQPWN P    KISD   + ++E
Sbjct: 439 TYDDK--SFHQWQIVFWILAATYIGGAVVFAILGSGELQPWNNPPERKKISD---VTQEE 493

Query: 163 AEPLKK 168
             PLK 
Sbjct: 494 GVPLKN 499

Source: Drosophila ananassae

Species: Drosophila ananassae

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|195148128|ref|XP_002015026.1| GL18642 [Drosophila persimilis] gi|194106979|gb|EDW29022.1| GL18642 [Drosophila persimilis]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 91/126 (72%), Gaps = 9/126 (7%)

Query: 47  DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106
           D  ++V +F+LAL  +GAVTAGYLGNGLDIAPNF GTIFGLANTLSSFGGF+S+ +VG L
Sbjct: 372 DATWSVTIFSLALFAHGAVTAGYLGNGLDIAPNFGGTIFGLANTLSSFGGFLSTWMVGAL 431

Query: 107 TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP----KISDDVELAKKE 162
           T  DK   F  WQ VF +L  TY   A+VF++ G+G+LQPWN P    KISD   + ++E
Sbjct: 432 TYHDK--SFHQWQIVFWILAATYISAAVVFVVLGSGELQPWNNPPERKKISD---VTQEE 486

Query: 163 AEPLKK 168
             PLK 
Sbjct: 487 GVPLKS 492

Source: Drosophila persimilis

Species: Drosophila persimilis

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|198474532|ref|XP_001356729.2| GA15786 [Drosophila pseudoobscura pseudoobscura] gi|198138431|gb|EAL33794.2| GA15786 [Drosophila pseudoobscura pseudoobscura]

 Score =  139 bits (350), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 74/126 (58%), Positives = 91/126 (72%), Gaps = 9/126 (7%)

Query: 47  DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106
           D  ++V +F+LAL  +GAVTAGYLGNGLDIAPNF GTIFGLANTLSSFGGF+S+ +VG L
Sbjct: 372 DATWSVTIFSLALFAHGAVTAGYLGNGLDIAPNFGGTIFGLANTLSSFGGFLSTWMVGAL 431

Query: 107 TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP----KISDDVELAKKE 162
           T  DK   F  WQ VF +L  TY   A+VF++ G+G+LQPWN P    KISD   + ++E
Sbjct: 432 TYHDK--SFHQWQIVFWILAATYISAAVVFVVLGSGELQPWNNPPERKKISD---VTQEE 486

Query: 163 AEPLKK 168
             PLK 
Sbjct: 487 GVPLKS 492

Source: Drosophila pseudoobscura pseudoobscura

Species: Drosophila pseudoobscura

Genus: Drosophila

Family: Drosophilidae

Order: Diptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	171
FB|FBgn0031645	493	CG3036 [Drosophila melanogaste	0.619	0.215	0.616	6.9e-31
FB|FBgn0034490	465	CG9864 [Drosophila melanogaste	0.637	0.234	0.378	3.8e-17
ZFIN|ZDB-GENE-030616-554	584	slc17a6b "solute carrier famil	0.637	0.186	0.339	8.7e-14
UNIPROTKB|Q5ZL94	484	SLC17A5 "Uncharacterized prote	0.549	0.194	0.371	1.9e-13
FB|FBgn0031307	512	MFS3 "Major Facilitator Superf	0.578	0.193	0.355	2.4e-13
WB|WBGene00008000	493	C38C10.2 [Caenorhabditis elega	0.695	0.241	0.330	2.8e-13
UNIPROTKB|A6QLI1	582	SLC17A6 "Vesicular glutamate t	0.573	0.168	0.356	6.3e-13
UNIPROTKB|Q9P2U8	582	SLC17A6 "Vesicular glutamate t	0.573	0.168	0.356	6.3e-13
UNIPROTKB|F1SFZ2	582	SLC17A6 "Uncharacterized prote	0.573	0.168	0.356	6.3e-13
UNIPROTKB|F1PBW6	583	SLC17A6 "Uncharacterized prote	0.573	0.168	0.356	6.3e-13

FB|FBgn0031645 CG3036 [Drosophila melanogaster (taxid:7227)]

 Score = 340 (124.7 bits), Expect = 6.9e-31, P = 6.9e-31
 Identities = 69/112 (61%), Positives = 83/112 (74%)

Query:    47 DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL 106
             D  ++V +F+LAL  +GAVTAGYLGNGLDIAPNF GTIFGLANTLSSFGGF+S+ +VG L
Sbjct:   371 DATWSVTIFSLALFAHGAVTAGYLGNGLDIAPNFGGTIFGLANTLSSFGGFLSTSMVGAL 430

Query:   107 TDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP----KISD 154
             T  D+   F  WQ VF +L  TY   A+VF I G+G+LQPWN P    +ISD
Sbjct:   431 TYKDQ--SFHSWQIVFWILAATYISAAVVFAILGSGELQPWNNPPERVRISD 480

GO:0005436 "sodium:phosphate symporter activity" evidence=ISS

GO:0006817 "phosphate ion transport" evidence=ISS

GO:0016021 "integral to membrane" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

FB|FBgn0034490 CG9864 [Drosophila melanogaster (taxid:7227)]

 Score = 217 (81.4 bits), Expect = 3.8e-17, P = 3.8e-17
 Identities = 42/111 (37%), Positives = 63/111 (56%)

Query:    38 LDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF 97
             L I   F  DP   VA+ T++L FNGA TA  L N  D+APN++GT++G+ N + +  G 
Sbjct:   341 LIILAYFGRDPYVCVAIMTISLGFNGAATASNLANSQDLAPNYAGTLYGIINCVGTTPGI 400

Query:    98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN 148
              S  IV   T  +       W +VF++    Y + A+ F +FG+G++Q WN
Sbjct:   401 FSPLIVAAFTKNENT--IDQWHWVFIIGAAAYILPALFFWVFGSGKIQKWN 449

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

ZFIN|ZDB-GENE-030616-554 slc17a6b "solute carrier family 17 (sodium-dependent inorganic phosphate cotransporter), member 6b" [Danio rerio (taxid:7955)]

 Score = 188 (71.2 bits), Expect = 8.7e-14, P = 8.7e-14
 Identities = 38/112 (33%), Positives = 63/112 (56%)

Query:    44 FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIV 103
             +S     A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IV
Sbjct:   405 YSHSKGVAISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPLIV 464

Query:   104 GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD 155
             G +T   K R    WQYVF++ +  +  G I + IF +G+ QPW  P+++ D
Sbjct:   465 GAMTK-HKTRE--EWQYVFLIASLVHYGGVIFYGIFASGEKQPWADPELTSD 513

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0007268 "synaptic transmission" evidence=IMP

GO:0007601 "visual perception" evidence=IEA;IMP

GO:0043005 "neuron projection" evidence=IEA

GO:0006810 "transport" evidence=IEA

GO:0006836 "neurotransmitter transport" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0045202 "synapse" evidence=IEA

GO:0006811 "ion transport" evidence=IEA

GO:0031410 "cytoplasmic vesicle" evidence=IEA

GO:0050896 "response to stimulus" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

UNIPROTKB|Q5ZL94 SLC17A5 "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 169 (64.5 bits), Expect = 1.9e-13, Sum P(2) = 1.9e-13
 Identities = 36/97 (37%), Positives = 54/97 (55%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             AVA  T++ T  G  T+GY  N LDIAP+++G + G+ N+ ++  G V   I   LT  +
Sbjct:   381 AVAFVTISTTLGGFCTSGYSINHLDIAPSYAGILLGITNSFATIPGMVGPVIAKNLTHNN 440

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPW 147
              V     WQ VF +  +    GAI F +F +G++Q W
Sbjct:   441 TVGE---WQTVFYIAASINLFGAIFFALFASGEVQDW 474

GO:0016021 "integral to membrane" evidence=IEA

GO:0005765 "lysosomal membrane" evidence=IEA

GO:0005886 "plasma membrane" evidence=IEA

GO:0015136 "sialic acid transmembrane transporter activity" evidence=IEA

GO:0015739 "sialic acid transport" evidence=IEA

GO:0016023 "cytoplasmic membrane-bounded vesicle" evidence=IEA

FB|FBgn0031307 MFS3 "Major Facilitator Superfamily Transporter 3" [Drosophila melanogaster (taxid:7227)]

 Score = 183 (69.5 bits), Expect = 2.4e-13, P = 2.4e-13
 Identities = 37/104 (35%), Positives = 62/104 (59%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             AV++ ++ +   G++ +G+L N +DIAPNF+GT+  L NT ++  G V    VG +T G+
Sbjct:   393 AVSVMSVGIVAMGSMFSGFLSNHIDIAPNFAGTLVALTNTAATLPGIVVPLFVGFVTKGN 452

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN---TPK 151
             +  +   W+ +F V    + +  +VF+  G+G  QPWN   TPK
Sbjct:   453 Q--NIGAWRIIFGVTIVLFALEFLVFVFLGSGSEQPWNKAGTPK 494

GO:0005316 "high affinity inorganic phosphate:sodium symporter activity" evidence=ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

WB|WBGene00008000 C38C10.2 [Caenorhabditis elegans (taxid:6239)]

 Score = 182 (69.1 bits), Expect = 2.8e-13, P = 2.8e-13
 Identities = 44/133 (33%), Positives = 65/133 (48%)

Query:    17 AMFTLALTFNGA--VTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGL 74
             A   +AL   G   V +GY G G D+           +   T  +  +G   AG++ N L
Sbjct:   348 AAMLVALIGQGIFLVASGYCGCGQDV---------LVIIFITCGMAISGLQYAGFVVNYL 398

Query:    75 DIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI 134
             +IAP FSGT+ G  NT+S+  G +S  +   LT          WQ V  +     T+GA+
Sbjct:   399 EIAPPFSGTVMGTGNTISALAGIISPAVSSYLTPNGTQEE---WQMVLWLTAGILTIGAL 455

Query:   135 VFLIFGTGQLQPW 147
             +F IF +G++QPW
Sbjct:   456 LFSIFASGEVQPW 468

GO:0016021 "integral to membrane" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

UNIPROTKB|A6QLI1 SLC17A6 "Vesicular glutamate transporter 2" [Bos taurus (taxid:9913)]

 Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T  +
Sbjct:   412 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK-N 470

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
             K R    WQYVF++    +  G I + IF +G+ QPW  P+
Sbjct:   471 KSRE--EWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPE 509

GO:0043005 "neuron projection" evidence=IEA

GO:0030672 "synaptic vesicle membrane" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0006814 "sodium ion transport" evidence=IEA

UNIPROTKB|Q9P2U8 SLC17A6 "Vesicular glutamate transporter 2" [Homo sapiens (taxid:9606)]

 Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T  +
Sbjct:   412 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK-N 470

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
             K R    WQYVF++    +  G I + IF +G+ QPW  P+
Sbjct:   471 KSRE--EWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPE 509

GO:0006814 "sodium ion transport" evidence=IEA

GO:0015293 "symporter activity" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0030054 "cell junction" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0043005 "neuron projection" evidence=IEA

GO:0006811 "ion transport" evidence=TAS

GO:0030672 "synaptic vesicle membrane" evidence=TAS

GO:0055085 "transmembrane transport" evidence=TAS

UNIPROTKB|F1SFZ2 SLC17A6 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T  +
Sbjct:   412 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK-N 470

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
             K R    WQYVF++    +  G I + IF +G+ QPW  P+
Sbjct:   471 KSRE--EWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPE 509

GO:0008021 "synaptic vesicle" evidence=IEA

GO:0005313 "L-glutamate transmembrane transporter activity" evidence=IEA

GO:0001504 "neurotransmitter uptake" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

UNIPROTKB|F1PBW6 SLC17A6 "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 180 (68.4 bits), Expect = 6.3e-13, P = 6.3e-13
 Identities = 36/101 (35%), Positives = 58/101 (57%)

Query:    51 AVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD 110
             A++   LA+ F+G   +G+  N LDIAP ++  + G++N + +  G V   IVG +T  +
Sbjct:   413 AISFLVLAVGFSGFAISGFNVNHLDIAPRYASILMGISNGVGTLSGMVCPIIVGAMTK-N 471

Query:   111 KVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
             K R    WQYVF++    +  G I + IF +G+ QPW  P+
Sbjct:   472 KSRE--EWQYVFLIAALVHYGGVIFYAIFASGEKQPWADPE 510

GO:0055085 "transmembrane transport" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	171
TIGR00894	465	TIGR00894, 2A0114euk, Na(+)-dependent inorganic ph	2e-12

>gnl|CDD|129972 TIGR00894, 2A0114euk, Na(+)-dependent inorganic phosphate cotransporter

 Score = 63.6 bits (155), Expect = 2e-12
 Identities = 33/112 (29%), Positives = 51/112 (45%), Gaps = 5/112 (4%)

Query: 41  APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSS 100
            P  S      + + TLA   +    AG L N LD+AP F G I G+       GG ++S
Sbjct: 354 LPYLSAAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIAS 413

Query: 101 HIVG-VLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK 151
            + G +L+   K      W  VF+++     +  I +LIFG+ + Q W   +
Sbjct: 414 TLAGNILSQDSK----NVWLIVFLIMAFVNILCVIFYLIFGSAERQDWAKEE 461

[Transport and binding proteins, Anions]. Length = 465

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	171
KOG2532|consensus	466		99.85
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	99.38
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	98.39
PLN00028	476	nitrate transmembrane transporter; Provisional	98.16
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	98.14
TIGR00900	365	2A0121 H+ Antiporter protein.	97.99
PRK11663	434	regulatory protein UhpC; Provisional	97.99
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.98
TIGR00893	399	2A0114 d-galactonate transporter.	97.97
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.91
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.85
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.79
PRK03699	394	putative transporter; Provisional	97.75
PRK11010	491	ampG muropeptide transporter; Validated	97.75
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.73
TIGR00892	455	2A0113 monocarboxylate transporter 1.	97.72
TIGR00895	398	2A0115 benzoate transport.	97.72
TIGR00893	399	2A0114 d-galactonate transporter.	97.69
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.69
PRK09874	408	drug efflux system protein MdtG; Provisional	97.68
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.67
PRK09952	438	shikimate transporter; Provisional	97.63
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.63
PRK10054	395	putative transporter; Provisional	97.63
TIGR00891	405	2A0112 putative sialic acid transporter.	97.62
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.61
PRK09705	393	cynX putative cyanate transporter; Provisional	97.61
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.58
PRK05122	399	major facilitator superfamily transporter; Provisi	97.55
PRK10642	490	proline/glycine betaine transporter; Provisional	97.52
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.51
KOG2504|consensus	509		97.51
PRK09874	408	drug efflux system protein MdtG; Provisional	97.51
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.5
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.49
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	97.48
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.48
PRK15011	393	sugar efflux transporter B; Provisional	97.45
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	97.45
KOG2532|consensus	466		97.39
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.37
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.36
PRK11663	434	regulatory protein UhpC; Provisional	97.35
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.34
PRK10489	417	enterobactin exporter EntS; Provisional	97.34
PRK15462	493	dipeptide/tripeptide permease D; Provisional	97.33
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.33
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.31
PRK03545	390	putative arabinose transporter; Provisional	97.31
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.31
TIGR00898	505	2A0119 cation transport protein.	97.3
TIGR00896	355	CynX cyanate transporter. This family of proteins	97.3
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	97.28
PRK12382	392	putative transporter; Provisional	97.27
PRK03545	390	putative arabinose transporter; Provisional	97.25
PRK09705	393	cynX putative cyanate transporter; Provisional	97.25
PRK03893	496	putative sialic acid transporter; Provisional	97.24
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.23
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.23
PRK10504	471	putative transporter; Provisional	97.23
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.23
PLN00028	476	nitrate transmembrane transporter; Provisional	97.19
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.18
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	97.17
PRK09528	420	lacY galactoside permease; Reviewed	97.16
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.16
PRK12307	426	putative sialic acid transporter; Provisional	97.14
TIGR00901	356	2A0125 AmpG-related permease.	97.13
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	97.13
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.13
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	97.12
TIGR00898	505	2A0119 cation transport protein.	97.12
PRK11043	401	putative transporter; Provisional	97.12
PRK03893	496	putative sialic acid transporter; Provisional	97.11
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.1
PRK10406	432	alpha-ketoglutarate transporter; Provisional	97.07
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	97.04
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.03
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.03
KOG2533|consensus	495		97.03
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.03
KOG4686|consensus	459		97.0
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	97.0
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.97
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.93
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.93
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	96.93
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.92
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	96.92
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.91
PRK10091	382	MFS transport protein AraJ; Provisional	96.9
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.88
PRK03633	381	putative MFS family transporter protein; Provision	96.87
PRK11902	402	ampG muropeptide transporter; Reviewed	96.86
PRK03699	394	putative transporter; Provisional	96.8
PRK10489	417	enterobactin exporter EntS; Provisional	96.76
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.71
PRK15011	393	sugar efflux transporter B; Provisional	96.62
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.58
PRK09528	420	lacY galactoside permease; Reviewed	96.58
PRK10054	395	putative transporter; Provisional	96.58
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	96.57
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	96.51
TIGR00891	405	2A0112 putative sialic acid transporter.	96.51
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	96.47
PRK10642	490	proline/glycine betaine transporter; Provisional	96.46
KOG0255|consensus	521		96.46
PRK10077	479	xylE D-xylose transporter XylE; Provisional	96.44
KOG0252|consensus	538		96.4
PTZ00207	591	hypothetical protein; Provisional	96.39
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	96.39
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.38
PRK12307	426	putative sialic acid transporter; Provisional	96.34
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	96.32
PRK09952	438	shikimate transporter; Provisional	96.3
TIGR00897	402	2A0118 polyol permease family. This family of prot	96.3
PRK11646	400	multidrug resistance protein MdtH; Provisional	96.28
PRK10091	382	MFS transport protein AraJ; Provisional	96.27
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	96.23
PRK11010	491	ampG muropeptide transporter; Validated	96.16
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	96.07
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	96.06
KOG2615|consensus	451		96.04
PF13347	428	MFS_2: MFS/sugar transport protein	96.04
PRK10406	432	alpha-ketoglutarate transporter; Provisional	96.0
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	95.99
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.99
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	95.96
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	95.85
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	95.78
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.77
PRK11195	393	lysophospholipid transporter LplT; Provisional	95.7
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	95.7
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	95.41
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.41
PRK10133	438	L-fucose transporter; Provisional	95.41
TIGR00805	633	oat sodium-independent organic anion transporter.	95.39
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	95.35
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	95.31
PRK11043	401	putative transporter; Provisional	95.21
PRK12382	392	putative transporter; Provisional	95.17
PRK15075	434	citrate-proton symporter; Provisional	95.17
TIGR00895	398	2A0115 benzoate transport.	95.16
KOG1330|consensus	493		95.09
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	94.95
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	94.89
KOG3764|consensus	464		94.84
PRK10504	471	putative transporter; Provisional	94.82
PRK15075	434	citrate-proton symporter; Provisional	94.76
TIGR00900	365	2A0121 H+ Antiporter protein.	94.73
PRK11902	402	ampG muropeptide transporter; Reviewed	94.65
PRK05122	399	major facilitator superfamily transporter; Provisi	94.57
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	94.46
KOG0569|consensus	485		94.4
PRK11652	394	emrD multidrug resistance protein D; Provisional	94.39
KOG0253|consensus	528		94.24
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	94.0
PRK10429	473	melibiose:sodium symporter; Provisional	93.89
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.85
COG0738	422	FucP Fucose permease [Carbohydrate transport and m	93.85
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	93.83
KOG2504|consensus	509		93.81
PRK03633	381	putative MFS family transporter protein; Provision	93.79
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	93.58
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	93.43
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	93.33
TIGR00769	472	AAA ADP/ATP carrier protein family. These proteins	93.19
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.17
PF00854	372	PTR2: POT family; InterPro: IPR000109 This entry r	93.11
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	92.94
PRK09669	444	putative symporter YagG; Provisional	92.81
TIGR00896	355	CynX cyanate transporter. This family of proteins	92.81
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	92.74
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	92.7
PRK10213	394	nepI ribonucleoside transporter; Reviewed	92.52
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	92.32
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	92.13
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	91.98
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	91.94
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	91.9
COG2270	438	Permeases of the major facilitator superfamily [Ge	91.79
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	91.55
PRK10429	473	melibiose:sodium symporter; Provisional	91.54
PRK10133	438	L-fucose transporter; Provisional	91.48
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	91.13
KOG0255|consensus	521		90.9
PRK10473	392	multidrug efflux system protein MdtL; Provisional	90.12
COG3104	498	PTR2 Dipeptide/tripeptide permease [Amino acid tra	89.62
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	89.61
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	89.57
PRK10207	489	dipeptide/tripeptide permease B; Provisional	89.56
PF01306	412	LacY_symp: LacY proton/sugar symporter; InterPro:	88.81
KOG0254|consensus	513		88.59
PF03219	491	TLC: TLC ATP/ADP transporter; InterPro: IPR004667	88.42
TIGR00788	468	fbt folate/biopterin transporter. The only functio	88.21
PF01770	412	Folate_carrier: Reduced folate carrier; InterPro:	88.04
KOG2816|consensus	463		88.03
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	86.94
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	86.51
PRK11462	460	putative transporter; Provisional	85.82
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	85.62
PF06813	250	Nodulin-like: Nodulin-like; InterPro: IPR010658 Th	85.22
PRK09848	448	glucuronide transporter; Provisional	85.1
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	84.91
TIGR00926	654	2A1704 Peptide:H+ symporter (also transports b-lac	84.71
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	82.68
PRK09669	444	putative symporter YagG; Provisional	82.29
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	81.33
PRK14995	495	methyl viologen resistance protein SmvA; Provision	80.74

>KOG2532|consensus

Probab=99.85  E-value=2.5e-21  Score=168.62  Aligned_cols=134  Identities=25%  Similarity=0.550  Sum_probs=120.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFG   95 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~   95 (171)
                      ++.+..||.++++++.++++.+  +++..+ +...++++++++.++.|++.+|+..+++|.+|||+|+++|+.|+.++++
T Consensus       326 ls~t~~rkifn~i~~~~~ai~l~~l~~~~~~~~~~a~~~l~~~~~~~g~~~~Gf~~~~~~~apq~a~~l~g~~~~~~~~~  405 (466)
T KOG2532|consen  326 LSETTVRKIFNTIAFGGPAVFLLVLAFTSDEHRLLAVILLTIAIGLSGFNISGFYKNHQDIAPQHAGFVMGIINFVGALA  405 (466)
T ss_pred             CchHhHHHHHHhHHHHHHHHHHHeeeecCCCcchHHHHHHHHHHHHcccchhhhHhhhhhccchHHHHHHHHHHHHHHHH
Confidence            6788899999999999999765  455544 4468999999999999999999999999999999999999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCCCCCcc
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPKISDD  155 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~~~~~  155 (171)
                      ++++|.++|.+++++   +.++|+.+|.+.++++++++++|.+++++|+|+|++++++++
T Consensus       406 ~~~~P~~vg~~~~~~---t~~eW~~VF~i~a~i~~~~~i~f~~f~s~e~~~w~~~~~~~~  462 (466)
T KOG2532|consen  406 GFIAPLLVGIIVTDN---TREEWRIVFLIAAGILIVGNIIFLFFGSGEPAPWTKSEEKEE  462 (466)
T ss_pred             HHHHHHheeeEeCCC---CHHHHHHHHHHHHHHHHHhchheeEeecCcccCccCCccccc
Confidence            999999999999743   567999999999999999999999999999999999655433

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=99.38  E-value=4.8e-12  Score=109.02  Aligned_cols=106  Identities=28%  Similarity=0.512  Sum_probs=88.9

Q ss_pred             cchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816         46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL  125 (171)
Q Consensus        46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~  125 (171)
                      .+....+.+++++.++.+....+.+....|.+|+++|.+.|+.|+.++++++++|.++|++++.+   +.++|+.+|.+.
T Consensus       359 ~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~---~~~~~~~~f~~~  435 (465)
T TIGR00894       359 AAFYLTIIILTLANAVSSGPLAGVLINSLDLAPRFLGFIKGITGLPGFIGGLIASTLAGNILSQD---SKNVWLIVFLIM  435 (465)
T ss_pred             CchHHHHHHHHHHHHHhhhhhhhhhhchhhcChhHHHHHHHHHHHHHHHHHHHHHHhhheeeCCC---CchHHHHHHHHH
Confidence            34455566666666666666677788888999999999999999999999999999999998864   235799999999


Q ss_pred             HHHHHHHHHhhhheecccccCCCCCCCCc
Q psy15816        126 TTTYTVGAIVFLIFGTGQLQPWNTPKISD  154 (171)
Q Consensus       126 a~i~~~g~i~~~~~~~~e~q~w~~~~~~~  154 (171)
                      +++.+++.+++.++.+.|+|+|++++++|
T Consensus       436 ~~~~~i~~i~~~~~~~~~~~~w~~~~~~~  464 (465)
T TIGR00894       436 AFVNILCVIFYLIFGSAERQDWAKEEKDT  464 (465)
T ss_pred             HHHHHHHHHHeeeeecceecCCCCCcccC
Confidence            99999999999999999999999765544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=98.39  E-value=1.4e-07  Score=81.07  Aligned_cols=123  Identities=13%  Similarity=0.100  Sum_probs=87.7

Q ss_pred             HHHHHHHHHHhhHHHHhhhh--ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHHHhhhhhh
Q psy15816         22 ALTFNGAVTAGYLGNGLDIA--PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTLSSFGGFV   98 (171)
Q Consensus        22 ~~ark~~~~~G~~~~~l~l~--~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~g~l~gii   98 (171)
                      +.--|.++..|++.+++.-+  .+. .+...-.++..+.-.+.++..+....+... .+++..|...++-|+.+|++|.+
T Consensus        90 r~npr~fm~~gLilsai~nil~Gfs-~s~~~~~~l~~lng~fQg~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal  168 (448)
T COG2271          90 RSNPRYFMAFGLILSAIVNILFGFS-PSLFLFAVLWVLNGWFQGMGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGAL  168 (448)
T ss_pred             cCCCceeehHHHHHHHHHHHHHhhh-hHHHHHHHHHHHHHHHhcCCCcHHHHHHHHHcCccccCceEEEehhhhhcccch
Confidence            33346777888888886543  332 333333444444444545444443333333 33456899999999999999999


Q ss_pred             hhhhh--heeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCCC
Q psy15816         99 SSHIV--GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTPK  151 (171)
Q Consensus        99 ~p~i~--G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~~  151 (171)
                      .|.++  +++..+      ++||..|++.+++.++-+++.+...+++||+-.-|+
T Consensus       169 ~~~~~~la~~~~~------~~w~~~f~~pgiiaiival~~~~~~rd~Pqs~GLP~  217 (448)
T COG2271         169 APLVALLAFFAFH------GGWRAAFYFPGIIAIIVALILLFLLRDRPQSEGLPP  217 (448)
T ss_pred             HHHHHHHHHHHhc------cchhHHHHHHHHHHHHHHHHHHHHhCCCccccCCCC
Confidence            99999  888776      479999999999999999988888899999887653

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=98.16  E-value=2e-05  Score=68.72  Aligned_cols=73  Identities=11%  Similarity=0.032  Sum_probs=56.4

Q ss_pred             hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      +...+..++...++.|++.|.+.|+.+..++++++++|.+.+  .+.     .++|+.+|.+.+++.+++.++.++....
T Consensus       363 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~g~lg~~i~~~l~~--~~~-----~~~y~~~f~~~~~~~~i~~~~~~~~~~~  435 (476)
T PLN00028        363 QAACGATFGIVPFVSRRSLGVISGLTGAGGNVGAVLTQLLFF--TGS-----SYSTETGISLMGVMIIACTLPVAFIHFP  435 (476)
T ss_pred             HHhhhhhcccCcccChhhchhhhhhhhccccHHHHHHHHHHH--hcC-----CccHhhHHHHHHHHHHHHHHHHHheecc
Confidence            334445566666777888899999999999999999998765  121     2579999999999999998888776533

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=98.14  E-value=2.3e-05  Score=63.75  Aligned_cols=115  Identities=17%  Similarity=0.215  Sum_probs=75.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~   95 (171)
                      .+..+..||.....+.....+. +...+..+.+.......+.-...+...+...+...|..|+ +.+..+++.+...+++
T Consensus        54 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g  133 (352)
T PF07690_consen   54 YLSDRFGRRRVLIIGLLLFALGSLLLAFASNFWLLLIARFLLGIGSGFFSPASNALIADWFPPEERGRAFGILSAGFSLG  133 (352)
T ss_dssp             HHHHHS-HHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHH
T ss_pred             HHHHHcCCeeeEeehhhhhhhHHHHhhhhhhHHHHhhhccccccccccccccccccccccchhhhhhhccccccchhhhh
Confidence            4555666777777777666654 3222223333222222222222233344455556677774 7799999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      .+++|.+.+++.+.      .+|+.+|++.+++.++..+++..
T Consensus       134 ~~~g~~l~~~l~~~------~~~~~~~~~~~~~~~~~~il~~~  170 (352)
T PF07690_consen  134 SILGPLLGGFLISY------FGWRWAFLISAILSLIAAILFIL  170 (352)
T ss_dssp             HHHHHHHHHHCCCH------CHHCCHHHHHHHHHHHHHHHHHC
T ss_pred             hhcccchhhhhhhc------cccccccccccchhhhhhhhHhh
Confidence            99999999998854      46999999999998888775333

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.99  E-value=5.7e-05  Score=61.66  Aligned_cols=116  Identities=11%  Similarity=0.074  Sum_probs=71.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhh--hhccC---C-cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLD--IAPNF---S-EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANT   90 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~---~-~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~   90 (171)
                      .++.+..||.....+.....+.  +.+..   . .+.........+.-...+...+...+...|..| ++.+...|+.+.
T Consensus        56 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  135 (365)
T TIGR00900        56 ALADRYDRKKVMIGADLIRAVLVAVLPFVALLGGLNIWQVYVLAGILAIAQAFFTPAYQAMLPDLVPEEQLTQANSLSQA  135 (365)
T ss_pred             HHHHhhchhHHHHHHHHHHHHHHHHHHHHHHcCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHhHHHH
Confidence            4566777787776665543322  22221   1 133222222222222233333444556667777 567999999999


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ...++.+++|.+.+++.+.      .+|+..|.+.+...++..+....+
T Consensus       136 ~~~~g~~~g~~l~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~  178 (365)
T TIGR00900       136 VRSLFYIVGPGIGGLMYAT------LGIKWAIWVDAVGFAISALLIVSV  178 (365)
T ss_pred             HHHHHHHHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHhc
Confidence            9999999999999988775      469999998777666655544333

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.99  E-value=3.1e-05  Score=66.45  Aligned_cols=114  Identities=16%  Similarity=0.125  Sum_probs=70.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .+..+..||.....+.+...+..... ...+.........+.-...+...+...+...+..| ++.|...|+.+...+++
T Consensus        80 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g  159 (434)
T PRK11663         80 IVSDRSNARYFMGIGLIATGIINILFGFSSSLWAFALLWVLNAFFQGWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVG  159 (434)
T ss_pred             HHHhhcCCchhHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHH
Confidence            44556667777766666655433221 12233222222111112223333344445556666 56799999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      +.++|.+.|++.+.      .+||.+|.+.+++.++..+...
T Consensus       160 ~~~~~~~~~~l~~~------~gw~~~f~~~~i~~~~~~~~~~  195 (434)
T PRK11663        160 GALIPLVVGAIALH------YGWRYGMMIAGIIAIVVGLFLC  195 (434)
T ss_pred             HHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHHHHHHH
Confidence            99999999988765      4699999988877665544433

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.98  E-value=9e-06  Score=66.63  Aligned_cols=121  Identities=12%  Similarity=0.055  Sum_probs=72.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+..  .++. .+.........+.-...+...+...+...|..| +..+...++.+...++
T Consensus        52 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  130 (379)
T TIGR00881        52 SVSDRSNPRVFLPIGLILCAIVNLFFGFS-TSLWVMAALWALNGIFQGMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNV  130 (379)
T ss_pred             HHHHhhCCeehhHHHHHHHHHHHHHHHHh-hhHHHHHHHHHHHHhhccccCCchHHHHHHhcCHhhheeeEeehhccchh
Confidence            45566677777777666554432  2221 233322222222222333334444555567666 4678999999999999


Q ss_pred             hhhhhhh-hhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816         95 GGFVSSH-IVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ  145 (171)
Q Consensus        95 ~gii~p~-i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q  145 (171)
                      +++++|. +.+.+.+.      .+|+..|.+.+.+.++..+...++.+.+++
T Consensus       131 g~~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881       131 GGGLLPPLVLFGIAEL------YSWHWVFIVPGIIAIIVSLICFLLLRDSPQ  176 (379)
T ss_pred             HHHHHHHHHHHHHHhc------CCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence            9999994 45544333      479999998887777666655555544433

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.97  E-value=3.7e-05  Score=62.95  Aligned_cols=116  Identities=13%  Similarity=0.105  Sum_probs=70.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+..  .++. .+.........+.-...+...+.......|..| ++.+..+++.+...++
T Consensus        51 ~l~d~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  129 (399)
T TIGR00893        51 WLLDRFGARKTLAVFIVIWGVFTGLQAFA-GAYVSLYILRVLLGAAEAPFFPGIILIVASWFPASERATAVSIFNSAQGL  129 (399)
T ss_pred             HHHHhcCcceeeHHHHHHHHHHHHHHHHH-cCHHHHHHHHHHHHHHHHhhhhHHHHHHHHhCCHHHHHHHHHHHHHhchH
Confidence            34455666666655555443322  2221 233222222111111222223333445557777 5679999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      +++++|.+.+.+.+.      .+|+..|.+.+++.++..+...++.
T Consensus       130 g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  169 (399)
T TIGR00893       130 GGIIGGPLVGWILIH------FSWQWAFIIEGVLGIIWGVLWLKFI  169 (399)
T ss_pred             HHHHHHHHHHHHHHh------CCchHHHHHHHHHHHHHHHHhhhee
Confidence            999999999987765      3699999998887776666555443

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.91  E-value=7.3e-05  Score=64.75  Aligned_cols=70  Identities=17%  Similarity=0.256  Sum_probs=53.9

Q ss_pred             hhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCc------cccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         71 GNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKV------RHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        71 ~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~------~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ....|..| +.+|++.|+.|+.+++ +++++|.+.|++.+.+.+      +...+|+.+|.+.+++.+++.+.++.+.
T Consensus       372 ~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~  449 (467)
T PRK09556        372 VAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLMAIVA  449 (467)
T ss_pred             HHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34457778 5689999999999997 669999999999982100      0024599999999888888888777664

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.85  E-value=0.0002  Score=50.12  Aligned_cols=114  Identities=18%  Similarity=0.123  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhh
Q psy15816         20 TLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGF   97 (171)
Q Consensus        20 ~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gi   97 (171)
                      ..+..||.....+.....+.... ....+.........+.....+...+..+....|..| ++.+...++.+....++..
T Consensus        22 ~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  101 (141)
T TIGR00880        22 TDRFGRKPVLLVGLFIFVLSTAMFALSSNITVLIIARFLQGFGAAFALVAGAALIADIYPPEERGVALGLMSAGIALGPL  101 (141)
T ss_pred             HhhcchhHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHH
Confidence            34556666665555444433211 112333322222222222223333444555567766 5679999999999999999


Q ss_pred             hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++|.+.+.+.+.      .+|+..|.+.+.+.+++.+....+
T Consensus       102 ~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  137 (141)
T TIGR00880       102 LGPPLGGVLAQF------LGWRAPFLFLAILALAAFILLAFL  137 (141)
T ss_pred             HhHHhHHHHhcc------cchHHHHHHHHHHHHHHHHHHhhc
Confidence            999999988764      469999998887777766655444

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.79  E-value=0.00019  Score=61.33  Aligned_cols=122  Identities=11%  Similarity=0.039  Sum_probs=70.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.+...+..  .++ ..+...-...-.+.-...+...+.......+..| ++.|...|+.+....+
T Consensus        65 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~  143 (412)
T TIGR02332        65 IMLAIIGARRWIAGIMVLWGIASTATMF-ATGPESLYLLRILVGIAEAGFLPGILLYLTFWFPAYFRARANALFMIAMPV  143 (412)
T ss_pred             HHHHHhChHHHHHHHHHHHHHHHHHHHH-hcCHHHHHHHHHHHHHHHhhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            35567777777766666555432  222 2333221111111111112122233333456666 5689999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      +.+++|.+.+++.+.+...+..+||.+|.+.++..++..++..++.
T Consensus       144 g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~  189 (412)
T TIGR02332       144 TMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWL  189 (412)
T ss_pred             HHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhcc
Confidence            9999999999887531000124799999998777665555444443

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK03699 putative transporter; Provisional

Probab=97.75  E-value=0.00047  Score=58.22  Aligned_cols=114  Identities=12%  Similarity=0.092  Sum_probs=68.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+..  ..+ ..+.........+.-...+...+.......+..| +..+...+..+....+
T Consensus        64 ~l~dr~g~r~~~~~~~~~~~i~~~l~~~-~~~~~~~~~~~~l~G~~~g~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~  142 (394)
T PRK03699         64 WLMEIIPLKRQLIFGFALMILAVAGLMF-SHSLALFSIAMFVLGVVSGITMSIGTFLITHVYEGKQRGSRLLFTDSFFSM  142 (394)
T ss_pred             HHHHHhhHHHHHHHHHHHHHHHHHHHHH-cchHHHHHHHHHHHHHhhHhhccchhHHhhhhcccchHHHHHHHHHHHHHH
Confidence            45567777777766665544322  222 2333322222222222222222233344445556 4578889999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      ++.+.|.+.+++..+.     .+||.+|.+.+.+.++..+.+.
T Consensus       143 g~~~~~~~~~~l~~~~-----~gw~~~f~~~~~~~~~~~~~~~  180 (394)
T PRK03699        143 AGMIFPIIAAYLLARS-----IEWYWVYACIGLVYVAIFILTL  180 (394)
T ss_pred             HHHHHHHHHHHHHhcc-----ccHHHHHHHHHHHHHHHHHHHH
Confidence            9999999988877643     5799999988877666555443

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.75  E-value=0.00035  Score=61.31  Aligned_cols=73  Identities=21%  Similarity=0.416  Sum_probs=59.3

Q ss_pred             hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .++..+..++..+++.| ++.++.+|+.|...++++++.+.+.|++.+.      .+|+..|.+.+++.+.+.+......
T Consensus       330 ~g~~~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~------~G~~~~f~~~~~~~l~~l~~~~~~~  403 (491)
T PRK11010        330 GGMGTAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEA------HGWPTFYLFSVAAAVPGLLLLLVCR  403 (491)
T ss_pred             HHHHHHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHHH
Confidence            34444666777778777 4689999999999999999999999999886      3599999999988888877666553

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.73  E-value=0.00022  Score=66.00  Aligned_cols=116  Identities=13%  Similarity=0.109  Sum_probs=75.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         17 AMFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        17 ~~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      ..+.-+..||.....++++.++..+.+ +..+....+++.++..++.+...+..+....++.| +..|+.+|+.+..+.+
T Consensus       616 g~L~Dr~GRr~~l~~~~~lsai~~ll~~~~~s~~~ll~~~~l~g~~~~~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rl  695 (742)
T TIGR01299       616 ALLMDKIGRLRMLAGSMVLSCISCFFLSFGNSESAMIALLCLFGGLSIAAWNALDVLTVELYPSDKRATAFGFLNALCKA  695 (742)
T ss_pred             HHHHHHhCCHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            355668889998888888877654322 12233222222222222222223344555567778 5579999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +++++|.+.|.+.+.       .....|++.++++++++++.+++
T Consensus       696 Gaiigp~i~g~L~~~-------~~~~pf~i~a~~lll~~ll~~~L  733 (742)
T TIGR01299       696 AAVLGILIFGSFVGI-------TKAAPILFASAALACGGLLALKL  733 (742)
T ss_pred             HHHHHHHHHHHHHHh-------hhHHHHHHHHHHHHHHHHHHHhC
Confidence            999999999987654       24567888888888777766555

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=97.72  E-value=0.00012  Score=63.43  Aligned_cols=62  Identities=13%  Similarity=0.271  Sum_probs=50.6

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ..++...|..| ++.|...|+.+...+++++++|.+.|++.+..     ++|+..|++.+++.+++.+
T Consensus       353 ~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~-----g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       353 LLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDAT-----KNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             HHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhc-----CCcchHHHHhhHHHHHHHH
Confidence            33455556666 56799999999999999999999999998864     5799999998888777665

>TIGR00895 2A0115 benzoate transport

Probab=97.72  E-value=0.00013  Score=60.33  Aligned_cols=115  Identities=16%  Similarity=0.078  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .+..+..||.....+.....+... .....+.........+.-...+...+...+...|..| ++.+...++.+....++
T Consensus        74 ~l~d~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g  153 (398)
T TIGR00895        74 PLADRIGRKRVLLWSILLFSVFTLLCALATNVTQLLILRFLAGLGLGGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIG  153 (398)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHhcccccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHH
Confidence            345566777777666655544321 1122232222221111112223333444555667777 56799999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      +.++|.+.|++.+.      .+|+..|.+.+.+.++..+....
T Consensus       154 ~~~~~~~~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~  190 (398)
T TIGR00895       154 AAVGGFLAGWLIPV------FGWRSLFYVGGIAPLLLLLLLMR  190 (398)
T ss_pred             HHHHHHHHHHHhhc------ccceeehhhhhhHHHHHHHHHHH
Confidence            99999999988775      36999999886555555444333

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.69  E-value=0.00077  Score=55.10  Aligned_cols=68  Identities=28%  Similarity=0.425  Sum_probs=55.5

Q ss_pred             chhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         66 TAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        66 ~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      .+..++...|..| +..|...|+.+...++++.++|.+.|++.+..     ++|+..|.+.+++.+++.+.+.+
T Consensus       329 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~  397 (399)
T TIGR00893       329 GAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATT-----GSFAGALMVVAALALIGALSYLL  397 (399)
T ss_pred             hhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCC-----CchhHHHHHHHHHHHHHHHHHHH
Confidence            3455666667777 56899999999999999999999999998864     55999999988888887776554

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.69  E-value=0.00018  Score=62.02  Aligned_cols=117  Identities=15%  Similarity=0.231  Sum_probs=71.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchh----hhhhhhcccc-chHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAG----YLGNGLDIAP-NFSGTIFGLANT   90 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g----~~~~~~diap-~~ag~v~gi~n~   90 (171)
                      .+..+..||.....+.+...+..  .+....+...   .+.+.-.+.|+..+.    ......+..| ++.+...|+.+.
T Consensus        98 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~---~l~~~r~~~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~  174 (465)
T TIGR00894        98 YLAGKYVFKWSIGIGMFLSSVISIVIPWAAGGGIA---LVVFCRVIQGLAQGSVSPATHKIIVKWAPPKERSRLLGMSTS  174 (465)
T ss_pred             HHHHHhCcchhhHHHHHHHHHHHHHHHHHHHcCch---HHHHHHHHHHHhcccchhhHHHHHHhcCCHHHHHHHHHHHHH
Confidence            35556667777766665554332  1211011111   111222233333233    2334446666 678999999999


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ..+++.+++|.+.+++.+..     .+|+.+|++.+++.++..+++..+.++
T Consensus       175 ~~~~g~~i~~~l~~~l~~~~-----~gw~~~f~i~~~~~~~~~~~~~~~~~~  221 (465)
T TIGR00894       175 GFQLGTFIFLPISGWLCESW-----GGWPMIFYVFGIVGCAWSLLWFVFPAD  221 (465)
T ss_pred             HHHHHHHHHHHHHHHHHhcc-----CCCCeehhhhhHHHHHHHHHHHHHhcC
Confidence            99999999999999887642     379999999888777666655555433

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.68  E-value=0.00025  Score=59.39  Aligned_cols=63  Identities=22%  Similarity=0.197  Sum_probs=48.8

Q ss_pred             hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ...|..| +..+...|+.+....++.+++|.+.|.+.+.      .+|+..|.+.+.+.+++.+...++.
T Consensus       130 ~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~~  193 (408)
T PRK09874        130 LIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADS------YGLRPVFFITASVLFLCFLVTLFCI  193 (408)
T ss_pred             HHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHHh
Confidence            3345555 5579999999999999999999999988765      3699999998887777666544443

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.67  E-value=0.00013  Score=62.69  Aligned_cols=67  Identities=13%  Similarity=0.090  Sum_probs=49.5

Q ss_pred             hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ....|..| +..|..+|+.++..++++.+.|.+.+...+..     .+||.+|++.+.+.++..+...++.++
T Consensus       141 ~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~-----~~w~~~f~~~~~~~~i~~~~~~~~~~~  208 (438)
T TIGR00712       141 RTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWF-----NDWHAALYFPAICAIIVALFAFAMMRD  208 (438)
T ss_pred             HHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHh-----hhhHHHHHHHHHHHHHHHHHHHHhccC
Confidence            34446565 56899999999999999999998877655432     479999999888877765554444433

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK09952 shikimate transporter; Provisional

Probab=97.63  E-value=0.00064  Score=58.53  Aligned_cols=73  Identities=16%  Similarity=0.167  Sum_probs=54.6

Q ss_pred             hhcchhhhhhhhcccc-chHHHHHHHHHHHHh-hhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS-FGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~-l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +...+..++...|+.| ++.++..|+.+..+. +++.++|.+.|++++.+.    ++|+..|.+.+++.+++.+..+..
T Consensus       358 ~~~~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~----~~~~~~~~~~~~~~~i~~v~~~~~  432 (438)
T PRK09952        358 DMVVCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFG----GSWHSVAIYLLAGCLISAMTALLM  432 (438)
T ss_pred             HHHHHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcC----CCchHHHHHHHHHHHHHHHHHHHc
Confidence            3334455667778777 566778888666654 899999999999988542    579999998888888888776655

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.63  E-value=0.00071  Score=56.81  Aligned_cols=114  Identities=11%  Similarity=0.009  Sum_probs=66.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .+..+..||.....+.....+.... ....+.........+.-...+......++...|..| ++.+...++.+...+++
T Consensus        60 ~l~Dr~g~r~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~  139 (392)
T PRK10473         60 KIADRSGRKPVAIPGAALFIIASLLCSLAETSSLFLAGRFLQGIGAGCCYVVAFAILRDTLDDRRRAKVLSLLNGITCII  139 (392)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhhhHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHH
Confidence            3455667777766665554433221 112232221111111111112222223444456555 66799999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      ++++|.+.+.+.+.      .+|+..|.+.+.+.++..+...
T Consensus       140 ~~~~~~i~~~l~~~------~g~~~~~~~~~~~~~i~~~~~~  175 (392)
T PRK10473        140 PVLAPVLGHLIMLK------FPWQSLFYTMAAMGILVLLLSL  175 (392)
T ss_pred             HHHHHHHHHHHHhC------cChHHHHHHHHHHHHHHHHHHH
Confidence            99999998877654      4699999998877766665433

>PRK10054 putative transporter; Provisional

Probab=97.63  E-value=0.00022  Score=60.56  Aligned_cols=110  Identities=12%  Similarity=0.060  Sum_probs=66.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .++.+..||.....+.....+..  .++. .+.+..+....+.....+...+...+...|..| +..+..+|+.+...++
T Consensus        65 ~l~Dr~g~k~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~l  143 (395)
T PRK10054         65 ILADKFDKKRYMLLAITAFASGFIAIPLV-NNVTLVVLFFALINCAYSVFSTVLKAWFADNLSSTSKTKIFSLNYTMLNI  143 (395)
T ss_pred             HHHhhcCcchhHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHhHHHHHHHHHHHHHHH
Confidence            45556667776666665554332  2222 333222222211111111112223333456555 5679999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      ++.++|.+.+++.+       .+|+.+|.+.+++.+++.+.
T Consensus       144 g~~igp~l~~~l~~-------~g~~~~f~~~~~~~~i~~i~  177 (395)
T PRK10054        144 GWTVGPPLGTLLVM-------QSINLPFWLAAICSAFPLVF  177 (395)
T ss_pred             HHHHHHHHHHHHHH-------hccCcHHHHHHHHHHHHHHH
Confidence            99999999998764       25999999888777766543

>TIGR00891 2A0112 putative sialic acid transporter

Probab=97.62  E-value=0.00034  Score=58.05  Aligned_cols=111  Identities=8%  Similarity=0.006  Sum_probs=65.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+..  ..+ ..+...-.....+.-...+...+...+...|..| ++.+...++.+....+
T Consensus        69 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~  147 (405)
T TIGR00891        69 LWGDRYGRRLPMVTSIVLFSAGTLACGF-APGYITMFIARLVIGIGMGGEYGSSAAYVIESWPKHLRNKASGLLISGYAV  147 (405)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHH-hccHHHHHHHHHHHHhhhhhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHH
Confidence            45556677777766655554332  222 1232221111111111122222333444556666 6689999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA  133 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~  133 (171)
                      +.+++|.+.+.+.+...    .+|+..|.+.+...++..
T Consensus       148 g~~~~~~l~~~l~~~~~----~~w~~~f~~~~~~~~~~~  182 (405)
T TIGR00891       148 GAVVAAQVYSLVVPVWG----DGWRALFFISILPIIFAL  182 (405)
T ss_pred             HHHHHHHHHHHHHHhcC----ccHHHHHHHHHHHHHHHH
Confidence            99999999888876531    369999988665555443

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.61  E-value=0.00042  Score=57.34  Aligned_cols=115  Identities=11%  Similarity=0.047  Sum_probs=69.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      +..+..||.....+.....+.... ....+.........+.....+...+...+...|..| +..+.+.|+.+....+++
T Consensus        63 l~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  142 (385)
T TIGR00710        63 LSDRYGRRPVLLLGLFIFALSSLGLALSNNIETLLVLRFVQAFGASAGSVISQALVRDIYPGEELSRIYSILMPVLALAP  142 (385)
T ss_pred             HHHhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHcchhHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHH
Confidence            455666777666665554432211 111233222222212111222222333444557666 567999999999999999


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .++|.+.+++.+.      .+|+..|.+.+++.++..+....+
T Consensus       143 ~~g~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~  179 (385)
T TIGR00710       143 AVAPLLGGYILVW------LSWHAIFAFLSLAGILLSALIFFI  179 (385)
T ss_pred             HHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988765      469999998887777666554443

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.61  E-value=0.00035  Score=59.17  Aligned_cols=64  Identities=14%  Similarity=0.130  Sum_probs=51.5

Q ss_pred             hhhccc-c-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         72 NGLDIA-P-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        72 ~~~dia-p-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ...|.. | +++|.++|+.+..+++++.++|.+.|++.++.     ++|+..|.+.+...+++.++.+.+.
T Consensus       316 ~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~-----g~~~~~~~~~~~~~~~~~~~~~~~~  381 (393)
T PRK09705        316 LALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSIS-----GNYLMDWAFHALCVVGLMIITLRFA  381 (393)
T ss_pred             HHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHhc
Confidence            334444 3 46899999999999999999999999999875     6799999998888877776655553

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.58  E-value=0.00061  Score=56.56  Aligned_cols=115  Identities=15%  Similarity=0.117  Sum_probs=69.6

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      +..+..||.....+.....+..... ...+.........+.-...+.......+...|..| +..+...++.+....+++
T Consensus        49 l~d~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  128 (377)
T PRK11102         49 MADSFGRKPVILGGTLVFALAAVACALAQTIDQLIYMRFLHGLAAAAASVVINALMRDMFPKEEFSRMMSFVTLVMTIAP  128 (377)
T ss_pred             HHhhcCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3445667777766666555432211 11232222222111111122222233445556666 557999999999999999


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +++|.+.+.+.+.      .+|+..|.+.+.+.+++.+...++
T Consensus       129 ~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~  165 (377)
T PRK11102        129 LLAPIIGGWLLVW------FSWHAIFWVLALAAILAAALVFFF  165 (377)
T ss_pred             HHHHHHHHHHHHH------cChHHHHHHHHHHHHHHHHHHHHh
Confidence            9999999988765      369999998888777766554443

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.55  E-value=0.0008  Score=56.54  Aligned_cols=62  Identities=10%  Similarity=0.200  Sum_probs=49.5

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ..|..| +..|.+.|+.+...++++.++|.+.|++.+.      .+|+..|.+.+++.+++.+...++.
T Consensus       327 ~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~  389 (399)
T PRK05122        327 AVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASW------FGYPSIFLAAALAALLGLALTWLLY  389 (399)
T ss_pred             HHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------cCHHHHHHHHHHHHHHHHHHHHHhc
Confidence            335555 6689999999999999999999999988775      3699999998888887776655443

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=97.52  E-value=0.00093  Score=58.34  Aligned_cols=72  Identities=10%  Similarity=0.048  Sum_probs=47.9

Q ss_pred             hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCC
Q psy15816         71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNT  149 (171)
Q Consensus        71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~  149 (171)
                      ....++.| +..|+..|+.+..+.+.|.+.|.+.|++.+..     ++|+..+.+..+..+++.+..+++  +|...|..
T Consensus       365 ~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~-----~~~~~~~~~~~~~~~i~~~~~~~~--pes~~~~~  437 (490)
T PRK10642        365 STLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVEST-----QNLMMPAYYLMVVAVIGLITGVTM--KETANRPL  437 (490)
T ss_pred             HHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchHHHHHHHHHHHHHHHHHHHh--ccccCCCC
Confidence            33345667 56788889877778888999999999988753     467766666555555555544443  44445643

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.51  E-value=0.0015  Score=54.91  Aligned_cols=66  Identities=20%  Similarity=0.181  Sum_probs=50.2

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .++...+..| +..|...|+.+..+.+++.++|.+.|++.++.     ++|...|.+.+...+++.+..+..
T Consensus       329 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~  395 (406)
T PRK11551        329 LYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALG-----RSTVGVIGASIPVILVAALAALLL  395 (406)
T ss_pred             HHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccC-----CchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444556666 56899999999999999999999999998864     578888877766666655544433

>KOG2504|consensus

Probab=97.51  E-value=0.00027  Score=62.81  Aligned_cols=76  Identities=18%  Similarity=0.290  Sum_probs=58.9

Q ss_pred             hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816         72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP  150 (171)
Q Consensus        72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~  150 (171)
                      ...|+-+ +.....+|+...+..++.+++|.+.|++.+.+     ++|...|+..+...+++++++++... ..+.|.++
T Consensus       412 i~~~~~g~~~l~~a~Gl~l~~~gi~~l~gpPiag~~~d~t-----g~Y~~~f~~~g~~~~~s~~~~~~~~~-~~~~~~~~  485 (509)
T KOG2504|consen  412 ILVDLVGLEKLSNAYGLLLLFQGIGALVGPPIAGLLYDIT-----GNYDHAFYFCGLCFLLSAVLLLILRE-CLKRREKS  485 (509)
T ss_pred             HHHHHcChhhcchHHHHHHHHhHHHHHcCcccceeeeecc-----CCeeeehhhcChHHHHHHHHHHHhHH-HHHhcccc
Confidence            3345544 55688999999999999999999999888875     67999999999999999988887652 33444444


Q ss_pred             CCC
Q psy15816        151 KIS  153 (171)
Q Consensus       151 ~~~  153 (171)
                      +++
T Consensus       486 ~~~  488 (509)
T KOG2504|consen  486 AKT  488 (509)
T ss_pred             ccc
Confidence            333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.51  E-value=0.00021  Score=59.85  Aligned_cols=67  Identities=12%  Similarity=0.156  Sum_probs=52.4

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +...+...+..| ++.|.++++.+....++..++|.+.|.+.+.      .+|+..|.+.+++.+++.+.....
T Consensus       330 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~  397 (408)
T PRK09874        330 PAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISAN------YGFRAVFLVTAGVVLFNAVYSWNS  397 (408)
T ss_pred             HHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhh------cchhHHHHHHHHHHHHHHHHHHHH
Confidence            333444445555 5679999999999999999999999998775      369999999998888877765443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.50  E-value=0.0013  Score=55.67  Aligned_cols=61  Identities=10%  Similarity=0.019  Sum_probs=48.0

Q ss_pred             cccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         75 DIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        75 diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      +..| ++.+...++.+....+++.++|.+.+++.++      .+||.+|.+.+++.++..+.+.++.+
T Consensus       105 ~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~------~gWr~~f~~~~~l~~~~~~~~~~~lp  166 (368)
T TIGR00903       105 SQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTA------GGLQLLIIPIAAVAAAGIILVLAALP  166 (368)
T ss_pred             HHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHc------cchHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4334 6789999999999999999999998888764      47999999988877666655444443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.49  E-value=0.00057  Score=55.88  Aligned_cols=116  Identities=12%  Similarity=0.106  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g   96 (171)
                      .++.+..||.....+.....+..... ...+...-.....+.-...+...........+..|++.+...++.+....++.
T Consensus        60 ~l~d~~G~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  139 (377)
T TIGR00890        60 LLADKFGPRAVAMLGGILYGLGFTFYAIADSLAALYLTYGLASAGVGIAYGIALNTAVKWFPDKRGLASGIIIGGYGLGS  139 (377)
T ss_pred             HHHHHcCccchhHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHhHHHHHHHHcCcccHHHHHHHHHhcchhH
Confidence            35567777777766665554432211 11222211111111111111111112222334446667999999999999998


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++.+.+.+.+.+.      .+||..|.+.+++.++..+....+
T Consensus       140 ~~~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~~~~~~~  176 (377)
T TIGR00890       140 FILSPLITSVINL------EGVPAAFIYMGIIFLLVIVLGAFL  176 (377)
T ss_pred             hHHHHHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            8766665655443      479999999888776665544443

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=97.48  E-value=0.00086  Score=58.70  Aligned_cols=116  Identities=14%  Similarity=0.053  Sum_probs=68.8

Q ss_pred             HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc----hHHHHHHHHHH
Q psy15816         18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN----FSGTIFGLANT   90 (171)
Q Consensus        18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~----~ag~v~gi~n~   90 (171)
                      .++.+ ..||.....|.....+..  .+.. .+.....+...+.....++..+...+...|..|+    ..+..+++.+.
T Consensus        70 ~laDr~~G~~~~l~~~~~~~~~g~~~~~~~-~~~~~~~~~~~l~g~g~g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~  148 (475)
T TIGR00924        70 WFGDRVWGTKKTMVLGGIVLMLGHFMLAMS-IYPDLIFYGLGTIAVGSGLFKANPSSMVGKLYERGDMPRRDGGFTLFYM  148 (475)
T ss_pred             HHHHhhcchHHHHHHHHHHHHHHHHHHHhc-ccHhHHHHHHHHHHhccccccCCHHHHHHHhcCCCCcccccceehhHHH
Confidence            34455 577777777766655432  2222 2222111111111111222223333343454442    25778999999


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ..|++++++|.+.|++.++      .+|+.+|.+.++..+++.+.+....
T Consensus       149 ~~niG~~ig~~l~g~l~~~------~g~~~~f~~~~~~~~~~~l~~~~~~  192 (475)
T TIGR00924       149 SINIGSFISPLLAGVIAEN------YGYHVGFNLAAVGMVIGLLTFFAGR  192 (475)
T ss_pred             HHHHHHHHHHHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHHcc
Confidence            9999999999999998765      3699999998877777766665543

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.48  E-value=0.00056  Score=56.46  Aligned_cols=64  Identities=16%  Similarity=0.270  Sum_probs=52.4

Q ss_pred             hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .....|..|+..+...++.+...++++.++|.+.|.+.+.      .+|+.+|.+.+++.+++.+...+.
T Consensus       310 ~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~  373 (375)
T TIGR00899       310 MLYFQDLMPGRAGAATTLYTNTGRVGWIIAGSVGGILAER------WSYHAVYWFAIVMLIVALFCLLLI  373 (375)
T ss_pred             HHHHHHhCcchhhHHHHHHHHHHHHHHHHHHHHHHHHHHh------ccchhHHHHHHHHHHHHHHHHhee
Confidence            4445677787778999999999999999999999998775      369999999888888887765543

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK15011 sugar efflux transporter B; Provisional

Probab=97.45  E-value=0.00077  Score=56.97  Aligned_cols=64  Identities=16%  Similarity=0.217  Sum_probs=52.3

Q ss_pred             hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .....|..|+..|...++.+...++++.++|.+.|++.+.      .+|+.+|.+.+++.+++.+.+...
T Consensus       327 ~~~~~~~~p~~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~------~g~~~~~~~~~~~~~~~~~~~~~~  390 (393)
T PRK15011        327 MLYFQDLMPGQAGSATTLYTNTSRVGWIIAGSLAGIVAEI------WNYHAVFWFALVMIIATLFCLLRI  390 (393)
T ss_pred             HHHHHHhCCCCcchHHHHHHHHHHHHHHHHHHHHHHHHHH------hhhHHHHHHHHHHHHHHHHHHHhh
Confidence            4455677887789999999999999999999999998875      369999998888877777665544

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=97.45  E-value=0.0015  Score=54.99  Aligned_cols=112  Identities=14%  Similarity=0.045  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhh--hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLD--IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .++.+..||.....+.....+.  +.++. .+.........+.-...+...+...+...|..| ++.+..+++.+....+
T Consensus        72 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  150 (406)
T PRK11551         72 RLADRIGRKRILIVSVALFGLFSLATAQA-WDFPSLLVARLLTGVGLGGALPNLIALTSEAVGPRLRGTAVSLMYCGVPF  150 (406)
T ss_pred             HHHHHhCCchhHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHhhHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            3455566777666665444432  22222 333322222222111222222333445556665 6689999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      +++++|.+.+.+.+.      .+|+..|.+.+.+.++..+..
T Consensus       151 g~~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  186 (406)
T PRK11551        151 GGALASVIGVLAAGD------AAWRHIFYVGGVGPLLLVPLL  186 (406)
T ss_pred             HHHHHHHHHHHHccc------cCHHHHHHHHHHHHHHHHHHH
Confidence            999999987766554      469999998776655554433

>KOG2532|consensus

Probab=97.39  E-value=0.00094  Score=58.75  Aligned_cols=67  Identities=19%  Similarity=0.361  Sum_probs=57.3

Q ss_pred             cccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816         75 DIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP  146 (171)
Q Consensus        75 diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~  146 (171)
                      .-+| +..+...++......++.++.-.++|++.+..     .+|+.+|++.+++.++-.++|.++.++++++
T Consensus       155 ~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~-----~GW~sifY~~g~~g~i~~~~w~~~~~d~P~~  222 (466)
T KOG2532|consen  155 KWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESS-----LGWPSIFYVFGIVGLIWFILWFLFYSDSPSK  222 (466)
T ss_pred             eECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccC-----CCCchHHHHHHHHHHHHHHHHHHHhcCCccc
Confidence            3445 56788889988888999999998999998873     6899999999999998888899988887777

>TIGR00889 2A0110 nucleoside transporter

Probab=97.37  E-value=0.0023  Score=54.95  Aligned_cols=71  Identities=18%  Similarity=0.286  Sum_probs=52.1

Q ss_pred             hhhhcccc-chHHHHHHHHH-HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         71 GNGLDIAP-NFSGTIFGLAN-TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        71 ~~~~diap-~~ag~v~gi~n-~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      ....|..| +..|...|+.+ ....++++++|.+.|++.+........+|+.+|.+.+++.+++.+.+.++.+
T Consensus       331 ~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~  403 (418)
T TIGR00889       331 VFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFK  403 (418)
T ss_pred             HHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhC
Confidence            33456667 56799999998 5678999999999999988642001136999999888887777766666543

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.36  E-value=0.0012  Score=55.57  Aligned_cols=66  Identities=14%  Similarity=0.136  Sum_probs=53.0

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .+....|..| +..|...|+.+...++++++.|.+.|++.++      .+|+..|.+.+++.+++.+...++.
T Consensus       404 ~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~------~~~~~~f~~~~~~~~~~~i~~~~~~  470 (481)
T TIGR00879       404 PWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLES------IGVGGVFIFFGGLNVLGLIFVYFFL  470 (481)
T ss_pred             ehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------cCccceehhHHHHHHHHHHHHheec
Confidence            3444467777 4679999999999999999999999988776      3588899988888888777665543

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK11663 regulatory protein UhpC; Provisional

Probab=97.35  E-value=0.0012  Score=56.66  Aligned_cols=63  Identities=16%  Similarity=0.280  Sum_probs=52.1

Q ss_pred             hhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         72 NGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        72 ~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ...|..| +.+|.+.|+.|+.++++++++|.+.|++.+..      +|+.+|.+.+++.+++++..+...
T Consensus       361 ~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~------g~~~~f~~~~~~~~~~~~~~~~~~  424 (434)
T PRK11663        361 AAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIW------HWTGFFVVISIAAGISALLLLPFL  424 (434)
T ss_pred             HHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhc------ccHHHHHHHHHHHHHHHHHHHHHH
Confidence            3356665 57899999999999999999999999998863      599999999999888877655444

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.34  E-value=0.0022  Score=54.88  Aligned_cols=111  Identities=8%  Similarity=0.025  Sum_probs=67.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHH-HHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAM-FTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~l-l~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .++.+..||.....+.+...+... .....+...-+.. +..+.+. +......+....|..| +..+...++.+...++
T Consensus        73 ~l~dr~Grr~~l~~~~~~~~~~~~~~~~a~~~~~l~~~r~l~Gi~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  151 (413)
T PRK15403         73 PLSDRIGRRPVLITGALIFTLACAATLFTTSMTQFLIARFIQGTSI-CFIATVGYVTVQEAFGQTKGIKLMAIITSIVLV  151 (413)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHH-HHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHH
Confidence            566777888877777665554321 1122333221111 1111111 1111222344456655 4568889999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      +..++|.+.+++.++      .+||..|++.+++.+++.+.
T Consensus       152 ~~~~g~~lg~~l~~~------~gw~~~f~~~~~~~~i~~~~  186 (413)
T PRK15403        152 APIIGPLSGAALMHF------VHWKVLFAIIAVMGLIAFVG  186 (413)
T ss_pred             HHHHHHHHHHHHHHh------cCHHHHHHHHHHHHHHHHHH
Confidence            999999998887764      47999999988877766554

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.34  E-value=0.0015  Score=55.47  Aligned_cols=66  Identities=17%  Similarity=0.152  Sum_probs=48.2

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH-HHHHhhhhee
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT-VGAIVFLIFG  140 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~-~g~i~~~~~~  140 (171)
                      .++..++..| ++.|.++|+.+...++++.++|.+.|++.+..      +++..|...+++.+ ++.+++....
T Consensus       333 ~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~  400 (417)
T PRK10489        333 QYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMM------TPVASASASGFGLLIIGVLLLLVLG  400 (417)
T ss_pred             HHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHh------chhhHHHHHHHHHHHHHHHHHHhcc
Confidence            3455667777 56899999999999999999999999998763      46667766555544 4454444443

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=97.33  E-value=0.0014  Score=58.08  Aligned_cols=116  Identities=14%  Similarity=0.126  Sum_probs=67.7

Q ss_pred             HHHHHH-HHHHHHHHhhHHHHhh--hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccc---hHHHHHHHHHHH
Q psy15816         18 MFTLAL-TFNGAVTAGYLGNGLD--IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN---FSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~-ark~~~~~G~~~~~l~--l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~---~ag~v~gi~n~~   91 (171)
                      .++.+. .||.....|.....+.  ++.....+.......+.+.....++..+...+...|+-|+   .....+++....
T Consensus        67 ~LaDRilGrrr~iliG~il~~lg~lll~~~~~~~~~~~l~l~li~iG~G~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~  146 (493)
T PRK15462         67 FLADKVLGNRMAVMLGALLMAIGHVVLGASEIHPSFLYLSLAIIVCGYGLFKSNVSCLLGELYEPTDPRRDGGFSLMYAA  146 (493)
T ss_pred             HHHHHccCcHHHHHHHHHHHHHHHHHHHHhhcchhHHHHHHHHHHHhcccccccHHHHHHHHCCCCCccccceehHHHHH
Confidence            345555 7776666666554432  2222111111111111111122233223233334455442   457789999999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++++++++|.+.|++.+.      .+|+.+|.+.++.++++.+.|.+.
T Consensus       147 ~nlG~~iap~l~g~L~~~------~Gw~~~F~iaaigm~l~li~~~~~  188 (493)
T PRK15462        147 GNVGSIIAPIACGYAQEE------YSWAMGFGLAAVGMIAGLVIFLCG  188 (493)
T ss_pred             HHHHHHHHHHHHHHHHhh------hChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999999775      469999999877777777766543

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.33  E-value=0.0014  Score=56.17  Aligned_cols=115  Identities=9%  Similarity=0.103  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .+..+..||.....+.....+.. ......+...-+....+.-...+...+...+...|..| ++.+...++.+....++
T Consensus        59 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g  138 (485)
T TIGR00711        59 WLAKRFGTRRLFLISTFAFTLGSLLCGVAPNLELMIIFRVIQGFGGGPLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVA  138 (485)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHhCcCCHHHHHHHHHHHHhhhhhHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            45566778877766665555432 11222333222222221111222222333445557766 66799999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      ..++|.+.|++.++      .+|+++|++.+.+.++..+...+
T Consensus       139 ~~~g~~~~~~l~~~------~~w~~~f~~~~~~~~~~~~~~~~  175 (485)
T TIGR00711       139 PALGPTLGGWIIEN------YHWRWIFLINVPIGIIVVVVAFF  175 (485)
T ss_pred             hhhhhccHhHhccC------cCceehhhhhhHHHHHHHHHHHH
Confidence            99999999998775      46999999877666555544333

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.31  E-value=0.0016  Score=55.42  Aligned_cols=115  Identities=11%  Similarity=0.066  Sum_probs=72.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .++.+..||.....+.....+..... ...+.+.......+.....+...+...+...|..| ++.+...|+.+...+++
T Consensus        68 ~l~dr~g~k~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g  147 (400)
T PRK11646         68 AIADRFGAKPMIVTGMLMRAAGFATMAIAHEPWLLWLSCILSGLGGTLFDPPRTALVIKLIRPHQRGRFFSLLMMQDSAG  147 (400)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHH
Confidence            56667778888877776666543222 22333322221111111112222333444556665 57899999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..++|.+.|++. +      .+|+..|++.+.+.++..+....+
T Consensus       148 ~~ig~~l~g~l~-~------~g~~~~f~~~~~~~~~~~i~~~~~  184 (400)
T PRK11646        148 AVIGALLGSWLL-Q------YDFRLVCATGAVLFVLAAAFNAWL  184 (400)
T ss_pred             HHHHHHHHHHHH-H------hhHHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999987 3      369999999887777665544333

>PRK03545 putative arabinose transporter; Provisional

Probab=97.31  E-value=0.00085  Score=56.43  Aligned_cols=113  Identities=8%  Similarity=0.082  Sum_probs=68.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHh-hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTF-NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~-~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+.. ......+.+.-.+.. +..++ .+...+...+...|..| +..+...|+.+...++
T Consensus        66 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r-~~~G~~~~~~~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~  144 (390)
T PRK03545         66 LLTSNVERRKLLIGLFVLFIASHVLSALAWNFTVLLISR-IGIAFAHAIFWSITASLAIRVAPAGKKAQALSLLATGTAL  144 (390)
T ss_pred             HHHcCCChHHHHHHHHHHHHHHHHHHHHhccHHHHHHHH-HHHHHHHHHHHHHHHHHHHHhCChhhhhhHHHHHHHHHHH
Confidence            44556677777766665554432 222223332222211 11111 11111222344456666 5679999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      +..++|.+.+.+.+.      .+||..|.+.+.+.++..+...
T Consensus       145 g~~ig~~l~~~l~~~------~gw~~~f~~~~~~~~l~~~~~~  181 (390)
T PRK03545        145 AMVLGLPLGRVIGQY------LGWRTTFLAIGGGALITLLLLI  181 (390)
T ss_pred             HHHHHhhHHHHHHHH------hcHHHHHHHHHHHHHHHHHHHH
Confidence            999999999988764      4799999998887766654433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.31  E-value=0.0037  Score=50.34  Aligned_cols=112  Identities=23%  Similarity=0.274  Sum_probs=72.6

Q ss_pred             HHHHHHHH-HHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         20 TLALTFNG-AVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        20 ~l~~ark~-~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      ..+..||. ....+.....+..  .... .+.........+.....+...+.......+..| ++.+..+|+.+...+++
T Consensus       235 ~~~~~~~~~~~~~~~~~~~i~~~~~~~~-~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  313 (352)
T cd06174         235 SDRLGRRRLLLLIGLLLAALGLLLLALA-PSLALLLVALLLLGFGLGFAFPALLTLASELAPPEARGTASGLFNTFGSLG  313 (352)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHhccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHH
Confidence            34555565 5555555444332  2221 233322222222222333333444556667767 67899999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      +.++|.+.|.+.+.      .+|+..|.+.+++.+++.+.+.+
T Consensus       314 ~~i~~~i~g~l~~~------~~~~~~~~~~~~~~~i~~i~~~~  350 (352)
T cd06174         314 GALGPLLAGLLLDT------GGYGGVFLILAALALLAALLLLL  350 (352)
T ss_pred             HHHHHHHHHHHhcc------cCcchHHHHHHHHHHHHHHHhee
Confidence            99999999999875      46999999999988888776543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00898 2A0119 cation transport protein

Probab=97.30  E-value=0.0024  Score=55.42  Aligned_cols=114  Identities=14%  Similarity=0.104  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcc-hHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSED-PIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS   93 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~-~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~   93 (171)
                      .+..+..||.....+....++.+  ..+...+ ....+.+..++.+..+......+....|+.| +..+...|+.+..+.
T Consensus       377 ~l~dr~grr~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~  456 (505)
T TIGR00898       377 LLIDRLGRRYTMAASLLLAGVALLLLLFVPVDLYFLRTALAVLGKFGITSAFQMVYLYTAELYPTVVRNLGVGVCSTMAR  456 (505)
T ss_pred             HHHHHhCCHHHHHHHHHHHHHHHHHHHHcCCCchHHHHHHHHHHHHHHHHHHHHHHHHhcccccHHHHhhhHhHHHHHHH
Confidence            44556777877777766655432  2222122 2333333333333333333444566668778 567999999999999


Q ss_pred             hhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         94 FGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        94 l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++++++|.+.+ +.+       ..+...|.+.+++.+++++..+++
T Consensus       457 ig~~i~p~i~~-~~~-------~~~~~~~~~~~~~~~~~~~~~~~l  494 (505)
T TIGR00898       457 VGSIISPFLVY-LGE-------KWLFLPLVLFGGLALLAGILTLFL  494 (505)
T ss_pred             HHHHHHhHHHH-HHH-------HHHhhHHHHHHHHHHHHHHHHHcC
Confidence            99999999988 322       235667777777777776655544

>TIGR00896 CynX cyanate transporter

Probab=97.30  E-value=0.0026  Score=52.62  Aligned_cols=113  Identities=13%  Similarity=-0.013  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF   97 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gi   97 (171)
                      .++.+..||.....+.....+........+...-.+...+.-...+...........|..|++.+...++.+...+++..
T Consensus        57 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  136 (355)
T TIGR00896        57 WLARRFGEERSVAAGLLLIAAGILIRSAPGTALLFAGTALIGVGIAIINVLLPSLIKRDFPQRVGLMTGLYSMALMGGAA  136 (355)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHhccchHHHHHhCcchhhHHHHHHHHHHHHHHH
Confidence            45566777777666655443322211212322211111111111121112223334466677779999999999999999


Q ss_pred             hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ++|.+.+.+.+..    ...||..|...+.+.+++.+
T Consensus       137 i~~~~~~~l~~~~----~~~w~~~f~~~~~~~~~~~~  169 (355)
T TIGR00896       137 LAAAATVPLAQHS----GGHWQQALAWWALPALLALL  169 (355)
T ss_pred             HHHHHHHHHHHhh----hhhHHHHHHHHHHHHHHHHH
Confidence            9999988887653    13499999877665554443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=97.28  E-value=0.0029  Score=53.25  Aligned_cols=62  Identities=16%  Similarity=0.121  Sum_probs=45.6

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhh---heeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIV---GVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~---G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      ......|..| ++.+...++.+...+++.+++|.+.   +...+.      .+||.+|.+.+...++..+..
T Consensus       148 ~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~------~~w~~~f~~~~~~~~~~~~~~  213 (481)
T TIGR00879       148 VPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNT------LGWRIPLGLQLIPAGLLFLGL  213 (481)
T ss_pred             HHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCC------ccHHHHHHHHHHHHHHHHHHH
Confidence            3445567766 6789999999999999999999987   544332      579999999665555554433

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK12382 putative transporter; Provisional

Probab=97.27  E-value=0.0011  Score=55.63  Aligned_cols=65  Identities=20%  Similarity=0.209  Sum_probs=52.9

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .....+..| ++.|...|+.+....+++.++|.+.|++.++      .+|+..|.+.+++.+++.+..+.+.
T Consensus       324 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~~  389 (392)
T PRK12382        324 GVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATS------FGYPSVFLAGAISAVLGIIVTILSF  389 (392)
T ss_pred             HHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCchHHHHHHHHHHHHHHHHHHhhc
Confidence            344445555 6789999999999999999999999999886      3699999999988888877666543

>PRK03545 putative arabinose transporter; Provisional

Probab=97.25  E-value=0.0034  Score=52.75  Aligned_cols=67  Identities=9%  Similarity=-0.027  Sum_probs=55.3

Q ss_pred             hhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         69 YLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        69 ~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      ......+..|+..|.+.|+.+....++..++|.+.|++.++      .+|+.+|...+.+.+++.+.+....+
T Consensus       315 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~~  381 (390)
T PRK03545        315 MQVKVLKLAPDATDVAMALFSGIFNIGIGAGALLGNQVSLH------LGLSSIGYVGAALALAALVWSILIFR  381 (390)
T ss_pred             HHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhHHHHHHHHHHHHHHHHHHHHcc
Confidence            34445567787779999999999999999999999999886      46999999999999888887766553

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=97.25  E-value=0.0029  Score=53.58  Aligned_cols=117  Identities=11%  Similarity=0.010  Sum_probs=68.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g   96 (171)
                      .+..+..||.....|.....+..+. .+.++...-++.-.+.-...+...+.......+..|+..+.++|+.+...++++
T Consensus        66 ~l~dr~G~r~~l~~~~~l~~~~~~~~~~a~~~~~ll~~r~l~Gig~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~  145 (393)
T PRK09705         66 WLHQHVSERRSVAISLLLIAVGALMRELYPQSALLLSSALLGGVGIGIIQAVMPSVIKRRFQQRTPLVMGLWSAALMGGG  145 (393)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHCcchHHHHHHHHHHHhHHHHHhhhhhHHHHHHccccchhHHHHHHHHHHHHH
Confidence            4566778888888887777654322 122333322221111111122222222233345556667999999999888899


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+++.+.+++.++.     .+||..+.+.+...++..+.++..
T Consensus       146 ~~g~~~~~~l~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~  183 (393)
T PRK09705        146 GLGAAITPWLVQHS-----ETWYQTLAWWALPAVVALFAWWWQ  183 (393)
T ss_pred             HHHHHHHHHHHHhc-----CCHHHHHHHHHHHHHHHHHHHHHH
Confidence            99998888877653     479998876555554444434333

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.24  E-value=0.0021  Score=55.54  Aligned_cols=56  Identities=9%  Similarity=0.050  Sum_probs=42.6

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHH
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTV  131 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~  131 (171)
                      .+...|..| +..|..+|+.+..+.+++.++|.+.|++.+..      +|+..|...++...+
T Consensus       388 ~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~------g~~~~~~~~~~~~~~  444 (496)
T PRK03893        388 PKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRL------DLGTALASLSFSLTF  444 (496)
T ss_pred             HHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccC------ChHHHHHHHHHHHHH
Confidence            344456667 56899999999999999999999999998763      577777655544433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.23  E-value=0.0013  Score=56.64  Aligned_cols=117  Identities=10%  Similarity=-0.007  Sum_probs=61.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh--hccC---CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI--APNF---SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS   92 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l--~~~~---~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g   92 (171)
                      ++.+..||.....+.....+..  .++.   ..+......+..+.-.+.+...+.......+..| ++.|...|+.+...
T Consensus        86 l~Dr~g~k~~l~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~l~gi~~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  165 (452)
T PRK11273         86 VSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCAH  165 (452)
T ss_pred             hhhccCCchhHHHHHHHHHHHHHHHHhhhcccccHHHHHHHHHHHHHHHhccchHHHHHHHHhCChHHHHHHHHHHHHHH
Confidence            4555666766666655554322  1111   1122222222222112223332333333445445 66899999999999


Q ss_pred             hhhh-hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         93 SFGG-FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        93 ~l~g-ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      ++++ ++.|++...+...      .+|+.+|++.+.+.++..+...++.+
T Consensus       166 ~~g~~~~~~l~~~~~~~~------~gw~~~f~i~~~~~~~~~~l~~~~~~  209 (452)
T PRK11273        166 NVGGGLPPLLFLLGMAWF------NDWHAALYMPAFAAILVALFAFAMMR  209 (452)
T ss_pred             HhhhhHHHHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHHHHHcc
Confidence            9987 4555543222221      47999999988776665554444433

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.23  E-value=0.0019  Score=54.84  Aligned_cols=110  Identities=11%  Similarity=-0.048  Sum_probs=66.4

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      +..+..||.....+.....+.. ......+.+.-...-.+.-...+...+...+...|..| +..+...++.....+++.
T Consensus        78 l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~g~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~  157 (394)
T PRK10213         78 TIQATDRRYVVILFAVLLTLSCLLVSFANSFSLLLIGRACLGLALGGFWAMSASLTMRLVPPRTVPKALSVIFGAVSIAL  157 (394)
T ss_pred             HhcccCcHHHHHHHHHHHHHHHHHHHHHChHHHHHHHHHHHHHhhHHHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHH
Confidence            3445667776666666555432 11111233222222112122222222333444457666 567999999999999999


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      +++|.+.+++.+.      .+||.+|.+.+.+.++..+
T Consensus       158 ~ig~~l~~~l~~~------~gw~~~f~~~~~l~~~~~l  189 (394)
T PRK10213        158 VIAAPLGSFLGEL------IGWRNVFNAAAVMGVLCIF  189 (394)
T ss_pred             HHHHHHHHHHHhh------cCHHHHHHHHHHHHHHHHH
Confidence            9999999998775      3699999988766655443

>PRK10504 putative transporter; Provisional

Probab=97.23  E-value=0.0031  Score=54.33  Aligned_cols=65  Identities=17%  Similarity=0.328  Sum_probs=50.1

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..+...|..| ++.+...|+.+...+++..++|.+.|++.++      .+|+++|.+...+..++.+.....
T Consensus       119 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~------~gw~~~f~~~~~~~~l~~~~~~~~  184 (471)
T PRK10504        119 GRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEY------ASWHWIFLINIPVGIIGAIATLML  184 (471)
T ss_pred             HHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhh------ccHHHHHHHHHHHHHHHHHHHHHh
Confidence            3444556666 5678999999999999999999999999875      369999998777666665554443

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.23  E-value=0.0045  Score=54.20  Aligned_cols=116  Identities=16%  Similarity=0.143  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhh-hcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNG-LDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~-~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .++.+..||.....+.....+.. ......+...-+..-.+.-...+...+...... .+..| ++.+..+|+......+
T Consensus        63 ~l~D~~Grk~~l~~~~~~~~~~~~~~~~a~~~~~li~~r~l~G~g~~~~~~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~  142 (495)
T PRK14995         63 ALGDRIGFKRLLMLGGTLFGLASLAAAFSPTASWLIATRALLAIGAAMIVPATLAGIRATFTEEKQRNMALGVWAAVGSG  142 (495)
T ss_pred             HHHHHhccHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCHHHHHHHHHHHHHHHHH
Confidence            55667788888877776665432 111223333222211111111111112222222 33434 6779999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +..++|.+.|++.++      .+||+.|++...+.++..+...++
T Consensus       143 g~~~gp~lgg~l~~~------~gwr~~f~i~~~~~~~~~~l~~~~  181 (495)
T PRK14995        143 GAAFGPLVGGILLEH------FYWGSVFLINVPIVLVVMGLTARY  181 (495)
T ss_pred             HHHHHHHHHHHhhcc------CChHHHHHHHHHHHHHHHHHHHHh
Confidence            999999999999876      479999999777666655544444

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.19  E-value=0.0012  Score=57.54  Aligned_cols=121  Identities=14%  Similarity=0.126  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHH-HHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVA-MFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS   93 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~-ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~   93 (171)
                      .++-+..||.....+.....+..  .++. .+.....+ .+..+.+..... . ......+..| ++.|.+.|+.+..++
T Consensus        93 ~l~dr~G~r~~~~~~~~~~~~~~~~~~~~-~s~~~l~~~r~l~G~~~~~~~-~-~~~~i~~~~~~~~rg~a~g~~~~~~~  169 (476)
T PLN00028         93 PVCDLYGPRYGSAFLLMLTAPAVFCMSLV-SSATGFIAVRFFIGFSLATFV-S-CQYWMSTMFNGKIVGTANGIAAGWGN  169 (476)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHh-cCHHHHHHHHHHHHHHHHhhH-H-HHHHHHHhcChhheeHHHHHHHHHHH
Confidence            44566777777766665554432  2222 23322111 111122111111 1 1112235555 567999999988877


Q ss_pred             hhhhhhhhhhheeec----CCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         94 FGGFVSSHIVGVLTD----GDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        94 l~gii~p~i~G~iv~----~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      +++.+++.+.+.+..    ... .+..+||.+|++.+++.++..+...++.++
T Consensus       170 ~g~~~~~~~~~~i~~~~~~~~~-~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~  221 (476)
T PLN00028        170 LGGGVTQLLMPLVFPLIKDAGA-PSFTAWRIAFFVPGLLHIIMGILVLTLGQD  221 (476)
T ss_pred             HHHHHHHHHHHHHHHHHHhcCC-cchhhhHHHHHHHHHHHHHHHHHHHHHcCc
Confidence            777776655443321    100 011379999999888877666655555433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.18  E-value=0.0036  Score=52.85  Aligned_cols=112  Identities=10%  Similarity=-0.032  Sum_probs=63.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      ++.+..||-....+.....+.... ....+.........+.-...+...+...+...|..| +..+...++.+....+++
T Consensus        71 l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~  150 (406)
T PRK15402         71 LSDRIGRRPVMLAGVAFFILTCLAILLAQSIEQFTLLRFLQGIGLCFIGAVGYAAIQESFEEADAIKITALMANVALLAP  150 (406)
T ss_pred             HHHHhCChHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHhHhhhHHHHHHHHHHHHhChhHHHHHHHHHHHHHHHHH
Confidence            455666777766665554433221 111232221111111111111111222344445555 455677888888888899


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      .++|.+.+++.+.      .+|+.+|++.+++.++..+..
T Consensus       151 ~~g~~i~~~l~~~------~~w~~~~~~~~~~~~~~~~~~  184 (406)
T PRK15402        151 LLGPLVGAALIHV------LPWRGMFVLFAALAALSFFGL  184 (406)
T ss_pred             HHHHHHHHHHHHc------cCccHHHHHHHHHHHHHHHHH
Confidence            9999998888765      469999998887776665543

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=97.17  E-value=0.0021  Score=54.93  Aligned_cols=57  Identities=11%  Similarity=0.220  Sum_probs=46.0

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT  130 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~  130 (171)
                      .+..+.+..| +.++.+.|+.|+.++++++++|.+.|.+.+..     ++|+.+|.+.+++.+
T Consensus       354 ~~~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~-----g~~~~~~~~~~~~~~  411 (412)
T TIGR02332       354 FWTTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDAT-----GSFNSGLWFVAALLV  411 (412)
T ss_pred             HHhhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccC-----CCCchhHHHHHHHHh
Confidence            3455455445 67899999999999999999999999998875     679999988766543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PRK09528 lacY galactoside permease; Reviewed

Probab=97.16  E-value=0.00088  Score=56.98  Aligned_cols=62  Identities=16%  Similarity=0.144  Sum_probs=46.4

Q ss_pred             hcccc-chHHHHHHH-HHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         74 LDIAP-NFSGTIFGL-ANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        74 ~diap-~~ag~v~gi-~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      .+..| +..++..++ .|+...++++++|.+.|++.+..      +|+.+|.+.+++.+++.++...+.+
T Consensus       341 ~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~------G~~~~f~~~~~~~~i~~~~~~~~~~  404 (420)
T PRK09528        341 TLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSI------GFQGTYLILGGIVLLFTLISVFTLS  404 (420)
T ss_pred             HHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhh------CchHHHHHHHHHHHHHHHHHHHHhc
Confidence            34334 555666655 68889999999999999998863      5999999988888777766655443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.16  E-value=0.0033  Score=55.02  Aligned_cols=119  Identities=11%  Similarity=0.053  Sum_probs=70.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hcc-CCc-chHHHHHHHHHHHHhhhh-cchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APN-FSE-DPIFAVAMFTLALTFNGA-VTAGYLGNGLDIAP-NFSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~-~~~-~~~~av~ll~la~~~~~~-~~~g~~~~~~diap-~~ag~v~gi~n~~   91 (171)
                      .+.-+..||.....+..+..+.+  ... ... +......+..+...+.+. ..+..|....++.| +..+...|+.+..
T Consensus       357 ~l~dr~gRR~~l~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~~p~~~R~~~~g~~~~~  436 (502)
T TIGR00887       357 FLVDIIGRKPIQLMGFFILTVLFFVLGFAYNHLSTHGFLAIYVLAQFFANFGPNATTFIVPGEVFPTRYRSTAHGISAAS  436 (502)
T ss_pred             HHhhhhcchhHHHHHHHHHHHHHHHHHHHHHhcchhHHHHHHHHHHHHHhcCCCchhhhhhhccCchhHHHHHHHHHHHH
Confidence            36667788887766665544322  111 111 111111111121222111 12344566678888 5579999999999


Q ss_pred             HhhhhhhhhhhhheeecCCCcc----ccCChhHHHHHHHHHHHHHHHhh
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVR----HFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~----~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      +.++++++|.+.|++.+.+..+    ....+..+|.+.+++.+++.+.+
T Consensus       437 ~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~  485 (502)
T TIGR00887       437 GKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFT  485 (502)
T ss_pred             hhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHh
Confidence            9999999999999988753100    00234667888888888776654

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK12307 putative sialic acid transporter; Provisional

Probab=97.14  E-value=0.0014  Score=55.41  Aligned_cols=103  Identities=7%  Similarity=0.006  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .+..+..||.....+.....+..  .++. .+.....+.-.+.-...+...+.......|..| ++.+...|+.+....+
T Consensus        75 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~l~~~r~l~G~g~g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~l  153 (426)
T PRK12307         75 LLADKFGRKPLMMWSIVAYSVGTGLSGLA-SGVIMLTLSRFIVGMGMAGEYACASTYAVESWPKHLKSKASAFLVSGFGI  153 (426)
T ss_pred             HHHHHhCChHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHhhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhH
Confidence            44566778877777666655432  2221 222221111111111112122222334456666 5679999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHH
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTT  127 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~  127 (171)
                      +.+++|.+.+.+.+.      .+||..|.+...
T Consensus       154 g~~~~~~l~~~l~~~------~~w~~~f~i~~~  180 (426)
T PRK12307        154 GNIIAAYFMPSFAEA------YGWRAAFFVGLL  180 (426)
T ss_pred             HHHHHHHHHHHHccc------CCHHHHHHHHHH
Confidence            999999988887664      479999987543

>TIGR00901 2A0125 AmpG-related permease

Probab=97.13  E-value=0.0048  Score=51.01  Aligned_cols=69  Identities=17%  Similarity=0.134  Sum_probs=49.1

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc--ccCChhHHHHHHHHHHHHHHHh
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR--HFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~--~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      ....+...|..| +..+.+.|+.....+++.+++|.+.+.+.+....+  ....||..|.+.++..++..+.
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~  173 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLV  173 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHH
Confidence            344455567665 66799999999999999999999988887653100  0113999999988877765543

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=97.13  E-value=0.006  Score=53.36  Aligned_cols=128  Identities=8%  Similarity=-0.068  Sum_probs=67.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhh--hhccCCc-c----hHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLD--IAPNFSE-D----PIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLAN   89 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~--l~~~~~~-~----~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n   89 (171)
                      .++.+..||.....+.+...+.  +...... .    ....++...+.-...+...+.......+..| ++.|...++.+
T Consensus        78 ~l~d~~Grr~~~~~~~~~~~v~~~~~~~~~~~~~~~~~~~~~~~r~l~G~~~g~~~~~~~~~~~e~~p~~~Rg~~~~~~~  157 (502)
T TIGR00887        78 WLADKLGRKRVYGMELIIMIIATVASGLSPGSSPKSVMATLCFWRFWLGVGIGGDYPLSAIITSEFATKKWRGAMMAAVF  157 (502)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHHHccCcccchHHHHHHHHHHHHHHHHhhhhHHHHHHHHHhcChhhHHHHHHHHH
Confidence            4566778887766655444332  1111111 1    1111122212122223333444555667777 67899999999


Q ss_pred             HHHhhhhhhhhhhhheeecCCC------c-----------cccCChhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816         90 TLSSFGGFVSSHIVGVLTDGDK------V-----------RHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPW  147 (171)
Q Consensus        90 ~~g~l~gii~p~i~G~iv~~~~------~-----------~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w  147 (171)
                      ....++.++++.+...+.....      +           ....+||..|.+.+...++..+...+  -+|...|
T Consensus       158 ~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~~~ip~~i~~~~~~~--lpESpr~  230 (502)
T TIGR00887       158 AMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGFGAVPALLALYFRLT--IPETPRY  230 (502)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHHHHHHHHHHHHHHHh--CCCCHHH
Confidence            9999999888887654432100      0           00136999997766555544333222  2555556

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.13  E-value=0.0035  Score=51.68  Aligned_cols=50  Identities=10%  Similarity=0.169  Sum_probs=39.7

Q ss_pred             HHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         85 FGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        85 ~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .++.+...+++..++|.+.+++.+.      .+|+..|.+.+.+.++..+...++.
T Consensus       127 ~~~~~~~~~~g~~ig~~~~~~l~~~------~~~~~~f~~~~~~~~~~~~~~~~~~  176 (375)
T TIGR00899       127 SSVMRAQISLAWVIGPPLAFWLALG------FGFTVMFLTAALAFVLCGVLVWLFL  176 (375)
T ss_pred             HHHHHHHHhHHHHHhhhHHHHHHHh------cccHHHHHHHHHHHHHHHHHHHHhC
Confidence            6888888899999999999988765      4699999998887776666554433

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=97.12  E-value=0.0014  Score=56.62  Aligned_cols=79  Identities=22%  Similarity=0.325  Sum_probs=62.3

Q ss_pred             HHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         59 LTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        59 ~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      ..+.+...+..+.....+-|+.+|.+.|+...+|.++|+.-|...|...+.+     ++|+..|++...+.+++.+....
T Consensus       325 ~~~~G~GnGsvfk~Ip~if~~~~G~v~G~vga~G~lGGf~lp~~~g~~~~~t-----g~~~~~f~~~~~~~~~a~v~~~~  399 (417)
T COG2223         325 FVFAGLGNGSVFKMIPVIFPKETGAVTGIVGAIGGLGGFFLPLAFGVSLDLT-----GSYTGAFMLLLAFYLVALVLTWA  399 (417)
T ss_pred             HHHhccCcchheeechHHHHhhhhHHHHHHHHhccccccchhHHHHHHHHhc-----ccHHHHHHHHHHHHHHHHHHHHH
Confidence            3355665555555555566888999999999999999999999999998875     68999999999888888876555


Q ss_pred             eecc
Q psy15816        139 FGTG  142 (171)
Q Consensus       139 ~~~~  142 (171)
                      ...+
T Consensus       400 ~y~r  403 (417)
T COG2223         400 LYAR  403 (417)
T ss_pred             HHHh
Confidence            4333

>TIGR00898 2A0119 cation transport protein

Probab=97.12  E-value=0.0018  Score=56.18  Aligned_cols=112  Identities=9%  Similarity=0.046  Sum_probs=67.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .++.+..||.....+.....+.. +.....+...-.++..+.-...+...........|..| ++.+.+.++.+....++
T Consensus       149 ~l~Dr~Grr~~~~~~~~~~~i~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g  228 (505)
T TIGR00898       149 YLSDRFGRKKVLLLSTLVTAVSGVLTAFSPNYTVFLVFRLLVGMGIGGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLG  228 (505)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHhhccchHHHHHHHhheecChhhhHHHHHHHHHHHHHH
Confidence            45567788877777766655432 22222333222222222222222222333445567666 66789999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      .++.|.+.+.+         .+||..|.+.++..++..+.+.+
T Consensus       229 ~~~~~~~~~~~---------~~wr~~~~~~~i~~~~~~~~~~~  262 (505)
T TIGR00898       229 LVLLPLVAYFI---------PDWRWLQLAVSLPTFLFFLLSWF  262 (505)
T ss_pred             HHHHHHHHHHh---------hHHHHHHHHHHHHHHHHHHHHHh
Confidence            99988876654         23999999988777766655533

>PRK11043 putative transporter; Provisional

Probab=97.12  E-value=0.0028  Score=53.30  Aligned_cols=63  Identities=16%  Similarity=0.169  Sum_probs=47.7

Q ss_pred             hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         71 GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        71 ~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +...|..| +..+...+..+....+++.++|.+.|++.+.      .+|+..|.+.+.+.++..+....+
T Consensus       117 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~  180 (401)
T PRK11043        117 ALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNH------FGWQAIFATLFAITLLLILPTLRL  180 (401)
T ss_pred             HHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CChHHHHHHHHHHHHHHHHHHHHc
Confidence            33445555 4567788888889999999999999988765      469999998887777766655444

>PRK03893 putative sialic acid transporter; Provisional

Probab=97.11  E-value=0.0033  Score=54.36  Aligned_cols=104  Identities=8%  Similarity=-0.043  Sum_probs=60.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      .++.+..||.....+.....+..  ..+. .+...-.+...+.-...+...+.......|..| ++.+...++.+...++
T Consensus        77 ~l~dr~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~  155 (496)
T PRK03893         77 AMGDRYGRRLAMVISIVLFSVGTLACGFA-PGYWTLFIARLVIGMGMAGEYGSSATYVIESWPKHLRNKASGFLISGFSI  155 (496)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHH-hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHH
Confidence            45556777777766655544322  2221 222211111111111112122223344456656 5679999999999999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT  128 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i  128 (171)
                      +.+++|.+.+++.+.      .+|+..|.+.+..
T Consensus       156 g~~~~~~~~~~l~~~------~~w~~~f~~~~~~  183 (496)
T PRK03893        156 GAVVAAQVYSLVVPV------WGWRALFFIGILP  183 (496)
T ss_pred             HHHHHHHHHHHHhcc------CCHHHHHHHHHHH
Confidence            999999999988765      4799999874433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.10  E-value=0.0034  Score=54.13  Aligned_cols=76  Identities=29%  Similarity=0.429  Sum_probs=56.9

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhhhh-hhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCCCC
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGGFV-SSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWNTP  150 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~gii-~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~~~  150 (171)
                      ..|..| +..|..+|+.+..+++++.+ +|.+.|++.++.      +|+.+|.+.+++.+++.+....+.+        .
T Consensus       372 ~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~------g~~~~f~~~~~~~~~~~~~~~~~~~--------~  437 (452)
T PRK11273        372 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVMI--------G  437 (452)
T ss_pred             HHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHh------cchHHHHHHHHHHHHHHHHHHHHhc--------c
Confidence            346677 56899999999999998765 799999998873      4999999988888887776655543        3


Q ss_pred             CCCccHHHhhhh
Q psy15816        151 KISDDVELAKKE  162 (171)
Q Consensus       151 ~~~~~~~~~~~~  162 (171)
                      ++|+++|+-||.
T Consensus       438 ~~~~~~~~~~~~  449 (452)
T PRK11273        438 EKRHHEELLQKR  449 (452)
T ss_pred             ccchHHHHHhhh
Confidence            444555655554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=97.07  E-value=0.0038  Score=53.48  Aligned_cols=116  Identities=14%  Similarity=-0.029  Sum_probs=66.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh-----ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA-----PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~-----~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~   91 (171)
                      .++.+..||.....+.....+...     .....+......++.++.+..+...+..+....|+.| ++.++..|+.+..
T Consensus       301 ~l~Dr~grr~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~fp~~~r~t~~g~~~~~  380 (432)
T PRK10406        301 ALSDKIGRRTSMLCFGSLAALFTVPILSALQNVSSPYAAFGLVMCALLIVSFYTSISGILKAEMFPAQVRALGVGLSYAV  380 (432)
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCccchhhhHHHHH
Confidence            355566666555444332221111     1111233333333333333333333345566678887 5789999999988


Q ss_pred             Hhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +++ .+...|.+.+.+ +..     +.|...|.+.+++.+++.+..+++
T Consensus       381 g~~~~g~~~p~~~~~l-~~~-----g~~~~~~~~~~~~~~i~~~~~~~l  423 (432)
T PRK10406        381 ANALFGGSAEYVALSL-KSI-----GMETAFFWYVTLMAVVAFLVSLML  423 (432)
T ss_pred             HHHHHHhHHHHHHHHH-HHh-----CCCcHHHHHHHHHHHHHHHHHHHh
Confidence            876 355588888854 432     567777887777777777665554

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=97.04  E-value=0.0038  Score=52.90  Aligned_cols=84  Identities=12%  Similarity=0.008  Sum_probs=61.3

Q ss_pred             chHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816         47 DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL  125 (171)
Q Consensus        47 ~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~  125 (171)
                      +...++.+++++..+.....+..++.+.|..|+ .+|+..|+.|..+++++++.|.+.+.++.        +.+.+|.+.
T Consensus       279 ~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~--------~~~~~f~~~  350 (368)
T TIGR00903       279 NRLALFAFIGIAGLLMLPAYAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFIS--------SAEAYFTFL  350 (368)
T ss_pred             ccHHHHHHHHHHHHhhhhhHHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhc--------CHHHHHHHH
Confidence            344455566655555555555677888898885 68999999999999999999999887763        245577777


Q ss_pred             HHHHHHHHHhhhh
Q psy15816        126 TTTYTVGAIVFLI  138 (171)
Q Consensus       126 a~i~~~g~i~~~~  138 (171)
                      ++..+++.+.-.+
T Consensus       351 ~~~~~i~~~~~~~  363 (368)
T TIGR00903       351 AILITIAFAIALL  363 (368)
T ss_pred             HHHHHHHHHHHHh
Confidence            7777777766443

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.03  E-value=0.0032  Score=58.40  Aligned_cols=128  Identities=10%  Similarity=0.035  Sum_probs=70.0

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .++-+..||.....+.+...+.. +..+..+...-.++..+.....+...+...+...+..| ++.|...++.+.+..++
T Consensus       224 ~LsDR~GRR~~lii~lil~~i~~ll~afa~s~~~llv~R~l~G~g~g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG  303 (742)
T TIGR01299       224 GLADKLGRKQCLLICLSVNGFFAFFSSFVQGYGFFLFCRLLSGFGIGGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIG  303 (742)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHH
Confidence            45666777877766655444322 11111222221111112112222223344555567777 67899999999999999


Q ss_pred             hhhhhhhhheeecCCC-------ccccCChhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816         96 GFVSSHIVGVLTDGDK-------VRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPW  147 (171)
Q Consensus        96 gii~p~i~G~iv~~~~-------~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w  147 (171)
                      +++++.+...++....       .....+||..|++.++..++..+.+.++  +|...|
T Consensus       304 ~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll~~~~l--PESPrw  360 (742)
T TIGR01299       304 GIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIGALTFM--PESPRF  360 (742)
T ss_pred             HHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHHHHHHc--CCCHHH
Confidence            9999887554443210       0012469999988776665554443333  444444

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.03  E-value=0.0052  Score=50.58  Aligned_cols=120  Identities=17%  Similarity=0.205  Sum_probs=57.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS   93 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~   93 (171)
                      .++.+..||.....+.....+..  .++. . +.. ......+..++.+...........|..| ++.+...++.+...+
T Consensus        59 ~l~dr~g~r~~~~~~~~~~~i~~~~~~~~-~~~~~-~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  136 (366)
T TIGR00886        59 FLVDKFGPRYTTTLSLLLLAIPCLWAGLA-VQSYS-VLLLLRLFIGIAGGSFASCMPWISFFFPKKIQGTALGLAAGWGN  136 (366)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHH-hhhHH-HHHHHHHHHHHhchhhHhHHHHHHHhcCHhhhhHHHHHHHHHhH
Confidence            45566677776666665555432  2221 2 222 1111111111111111222334446656 567888888887666


Q ss_pred             hhhhhhhhhhheeec----CCCccccCChhHHH-HHHHHHHHHHHHhhhhe
Q psy15816         94 FGGFVSSHIVGVLTD----GDKVRHFRPWQYVF-MVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        94 l~gii~p~i~G~iv~----~~~~~~~~~w~~vF-~i~a~i~~~g~i~~~~~  139 (171)
                      ++..+++.+.+.+.+    +.+.....+|++.| ...+.+..+..++..++
T Consensus       137 ~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~  187 (366)
T TIGR00886       137 MGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFFV  187 (366)
T ss_pred             HHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHHh
Confidence            666666555444332    11000124799999 44455544444444433

>KOG2533|consensus

Probab=97.03  E-value=0.0019  Score=57.22  Aligned_cols=75  Identities=16%  Similarity=0.256  Sum_probs=51.2

Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh-hhheecccccCCCCCCC
Q psy15816         78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV-FLIFGTGQLQPWNTPKI  152 (171)
Q Consensus        78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~-~~~~~~~e~q~w~~~~~  152 (171)
                      ++..|..+|+-++...++++++.++...+.+.++.....+||+.|.+.+++.++.+++ |+++-+...+.|=..++
T Consensus       165 ~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp~~P~~~~fl~~~  240 (495)
T KOG2533|consen  165 KSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLPDNPSKAWFLTDE  240 (495)
T ss_pred             hhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEecCChhhccccchH
Confidence            4456999999999999999999999655544322223468999999999988777654 44444333333433333

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.03  E-value=0.015  Score=49.91  Aligned_cols=66  Identities=12%  Similarity=0.091  Sum_probs=45.2

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhh------eeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVG------VLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G------~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..+....++.| +..+...|+.+..+.+++++++.+.+      ++.++      .+|+..|++.+++.+++.+...++
T Consensus       384 ~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  456 (479)
T PRK10077        384 VCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAH------FHNGFSYWIYGCMGVLAALFMWKF  456 (479)
T ss_pred             hhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhh------ccCccHHHHHHHHHHHHHHHHHhc
Confidence            34566667777 56899999999999988888755543      33333      357778888777766665544433

>KOG4686|consensus

Probab=97.00  E-value=0.0086  Score=50.24  Aligned_cols=62  Identities=19%  Similarity=0.376  Sum_probs=53.1

Q ss_pred             cchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816         46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGD  110 (171)
Q Consensus        46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~  110 (171)
                      -+++.++.++-++..+.+   +..|.+...+.|+ .-|+.+|.++.+-|++-.+.|+++|++++.+
T Consensus       353 lsPy~~m~~lGLsysllA---cslWP~va~~vpE~qLGTaygf~qsIqNLgla~i~Iiag~i~d~~  415 (459)
T KOG4686|consen  353 LSPYTSMTFLGLSYSLLA---CSLWPCVASLVPEEQLGTAYGFIQSIQNLGLAFIPIIAGFIADGD  415 (459)
T ss_pred             ccHHHHHHHHhhhHHHHH---HHHhhhhhhhCCHHHhcchHHHHHHHHhhhhhHHhhhhheeecCC
Confidence            478888888888877755   4568888877785 4799999999999999999999999999986

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=97.00  E-value=0.0045  Score=50.53  Aligned_cols=58  Identities=17%  Similarity=0.147  Sum_probs=47.1

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA  133 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~  133 (171)
                      .....|..| ++.|...|+.+....+++.++|.+.|++.+.      .+|+.+|.+.+++.+++.
T Consensus       317 ~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~f~~~~~~~~~~~  375 (377)
T TIGR00890       317 PSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTE------IGFEYTFIVTGAFALTSL  375 (377)
T ss_pred             HHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhh------hchhhHHHHHHHHHHHhc
Confidence            334456656 6689999999999999999999999998775      369999998887777654

>TIGR00897 2A0118 polyol permease family

Probab=96.97  E-value=0.0059  Score=51.71  Aligned_cols=62  Identities=16%  Similarity=0.179  Sum_probs=51.6

Q ss_pred             hhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         71 GNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        71 ~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      ....+..|++.|...|+.|....+++.++|.+.|.+.+..      +|+.+|++.+++++++.+...+
T Consensus       338 ~~~~~~~~~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~------g~~~~~~~~a~~~~i~~~~~~~  399 (402)
T TIGR00897       338 AVFPTLAPKHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFF------GAIGVVWIFAALYVVSAFLTAF  399 (402)
T ss_pred             HHHHhhCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhc------chHHHHHHHHHHHHHHHHHHHH
Confidence            3445677888899999999999999999999999998863      5889999988888877765544

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.93  E-value=0.003  Score=50.89  Aligned_cols=112  Identities=16%  Similarity=0.177  Sum_probs=70.7

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      +..+..||.....+.....+..... ...+.........+.-...+...+...+...|..| ++.+..+++.+...++++
T Consensus        57 ~~d~~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~  136 (352)
T cd06174          57 LSDRFGRRRVLLLGLLLFALGSLLLAFASSLWLLLVGRFLLGLGGGALYPAAAALIAEWFPPKERGRALGLFSAGFGLGA  136 (352)
T ss_pred             HHHHhCCchhhHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHcccccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHH
Confidence            4556667776666666655433221 11232222222222222223333444455567777 478999999999999999


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      .++|.+.+.+.+.      .+|+..|.+.+.+.+++.+..
T Consensus       137 ~~~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~  170 (352)
T cd06174         137 LLGPLLGGLLAES------LGWRWLFLILAILGLLLALLL  170 (352)
T ss_pred             HHHHHHHHHHHHH------hhHHHHHHHHHHHHHHHHHHH
Confidence            9999999988775      359999998877776665543

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.93  E-value=0.0026  Score=55.12  Aligned_cols=60  Identities=13%  Similarity=-0.029  Sum_probs=48.2

Q ss_pred             hccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         74 LDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        74 ~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+..|+..+.+.|+.+....+++.++|.+.|++.+.      .+||..|++.+++.+++.+.+.++
T Consensus       134 ~~~~~~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~------~gwr~~f~~~~~~~~~~~v~~~~~  193 (455)
T TIGR00892       134 GKYFYRRRPLANGLAMAGSPVFLSTLAPLNQYLFES------FGWRGSFLILGGLLLHCCVCGALM  193 (455)
T ss_pred             HHHHHhhHHHHHHHHHhcccHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHh
Confidence            344466679999999999999999999999988775      469999999988877666554443

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=96.93  E-value=0.0039  Score=54.86  Aligned_cols=55  Identities=15%  Similarity=0.246  Sum_probs=46.6

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+|.+.|+.+..|.++|++-|.+.|...+.+     ++|...|+...+.++++.++-+.+
T Consensus       399 ~~g~v~G~v~a~G~~Ggf~~p~~~g~~~~~~-----g~~~~~~~~~~~~~~~~~~~~w~~  453 (462)
T PRK15034        399 ETAAALGFISAIGAVGGFFIPQAFGMSLNMT-----GSPVGAMKVFLIFYIVCVLLTWLV  453 (462)
T ss_pred             HHHHHHHHHHHHHHcccchhhHHHHHHHHHc-----CCcHHHHHHHHHHHHHHHHHHHHH
Confidence            6899999999999999999999989887765     779999999888887776664443

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.92  E-value=0.0059  Score=53.84  Aligned_cols=53  Identities=15%  Similarity=0.204  Sum_probs=43.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+..+++.+...+++++++|.+.|++.++      .+|+..|.+.++..+++.+.+.+.
T Consensus       148 ~~~~~~~~~~~~~iG~~~gp~i~g~l~~~------~g~~~~F~i~~i~~~i~~i~~~~~  200 (500)
T PRK09584        148 LDGAFTMYYMSINIGSFFSMLATPWLAAK------YGWSVAFALSVVGMLITVVNFAFC  200 (500)
T ss_pred             hhhcchHHHHHHHHHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHh
Confidence            34578888999999999999999999775      469999999887777776665543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=96.92  E-value=0.00067  Score=58.78  Aligned_cols=75  Identities=12%  Similarity=0.037  Sum_probs=51.3

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL  144 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~  144 (171)
                      +...+...+..| ++.|..+|+.+...++++.+++.+..++.+..   ..+.|+..|.+.+.+.++.+++++++.++++
T Consensus       141 ~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~---~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p  216 (467)
T PRK09556        141 PCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYF---FDGHVIGMFIFPSIIALIIGFIGLRYGSDSP  216 (467)
T ss_pred             hHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhh---ccCcchhHHHHHHHHHHHHHHHHHHhCCCCh
Confidence            343445556666 56799999999999999999988876665531   1146999999888777666555555544433

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.91  E-value=0.0066  Score=53.50  Aligned_cols=116  Identities=12%  Similarity=0.072  Sum_probs=67.3

Q ss_pred             HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-c--hHHHHHHHHHHH
Q psy15816         18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-N--FSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~--~ag~v~gi~n~~   91 (171)
                      .++.+ ..||-....|.....+..  ..............+.+.....+...+...+...|.-| +  ..+..+++....
T Consensus        72 ~laDr~~G~r~~~~~g~~~~~~g~~~~~~~~~~~~ll~~~~~l~~ig~g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~  151 (489)
T PRK10207         72 YVGDHLLGTKRTIVLGAIVLAIGYFMTGMSLLKPDLIFIALGTIAVGNGLFKANPASLLSKCYPPKDPRLDGAFTLFYMS  151 (489)
T ss_pred             HhhhhccchHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHhccccccCCHHHHHHHhcCCCchhhhcchhHHHHH
Confidence            34555 788887777766655432  22211111111111111112222222333344445554 3  235678899999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .|++.+++|.+.|++.++      .+|+++|++.++..+++.+.+.+.
T Consensus       152 ~nig~~~g~~l~g~l~~~------~gw~~~F~i~~i~~~~~~~~~~~~  193 (489)
T PRK10207        152 INIGSLISLSLAPVIADK------FGYSVTYNLCGAGLIIALLVYFAC  193 (489)
T ss_pred             HHHHHHHHHHHHHHHHHh------hChHHHHHHHHHHHHHHHHHHHHc
Confidence            999999999999999876      369999999766566555555544

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.90  E-value=0.01  Score=49.91  Aligned_cols=109  Identities=8%  Similarity=-0.063  Sum_probs=63.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      ++.+..||.....+.....+..  ..+ .++.+.-.....+.-...+...+.......+..| +..+.+.++......++
T Consensus        61 l~dr~g~r~~~~~~~~~~~~~~~l~~~-~~~~~~l~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g  139 (382)
T PRK10091         61 FSSRYSLKHILLFLVALCVIGNAMFTL-SSSYLMLAIGRLVSGFPHGAFFGVGAIVLSKIIKPGKVTAAVAGMVSGMTVA  139 (382)
T ss_pred             HHccCccHHHHHHHHHHHHHHHHHHHH-hCcHHHHHHHHHHHHhhhHHHHHHHHHHHHHhCChHHhhHHHHHHHHHHHHH
Confidence            4556667777766665555432  222 2333322221111111111111222233345555 45688899999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ..++|.+.+++.+.      .+||.+|.+.+.+.++..+
T Consensus       140 ~~~g~~l~~~l~~~------~gwr~~f~~~~~~~~~~~~  172 (382)
T PRK10091        140 NLLGIPLGTYLSQE------FSWRYTFLLIAVFNIAVLA  172 (382)
T ss_pred             HHHhccHHHHHhhh------ccHHHHHHHHHHHHHHHHH
Confidence            99999998887664      4699999998877665544

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.88  E-value=0.0091  Score=50.10  Aligned_cols=61  Identities=15%  Similarity=0.069  Sum_probs=44.6

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..|..+ +..+...++.+....++..++|.+.|++.+.      .+|+.+|.+.+.+.++..+...++
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~  182 (394)
T PRK11652        121 PRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTL------FGWRACYLFLLLLGAGVTFSMARW  182 (394)
T ss_pred             HHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChHHHHHHHHHHHHHHHHHHHHh
Confidence            345444 4568888899999999999999999988664      369999998777665554443333

>PRK03633 putative MFS family transporter protein; Provisional

Probab=96.87  E-value=0.011  Score=49.68  Aligned_cols=68  Identities=6%  Similarity=0.027  Sum_probs=50.3

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ..+...|..| +..+...+..+...++++.++|.+.|++.++.      +|+..|.+.+++.+++.+..+...+.
T Consensus       306 ~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~------g~~~~f~~~~~~~l~~~~~~~~~~~~  374 (381)
T PRK03633        306 AMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNY------SDNLLFIMIASVSFIYLLMLLRKAGH  374 (381)
T ss_pred             HHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CccHHHHHHHHHHHHHHHHHHhccCC
Confidence            3343445555 45677788888899999999999999998863      58889999888887776655544333

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=96.86  E-value=0.013  Score=49.54  Aligned_cols=65  Identities=14%  Similarity=0.123  Sum_probs=48.5

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      ....+...|..| ++.+...++......++.++++.+.+++.+..     .+||..|.+.+.+.++..+..
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~-----~gw~~~f~i~a~~~l~~~l~~  178 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRV-----LGWGNTYLLMAGLMLAGALTT  178 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHHH
Confidence            344455556666 45799999999888999999999888776642     479999999888776655543

>PRK03699 putative transporter; Provisional

Probab=96.80  E-value=0.0055  Score=51.71  Aligned_cols=64  Identities=11%  Similarity=0.134  Sum_probs=47.8

Q ss_pred             hhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         70 LGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+...+..|+..+...|..+..+.+++.++|.+.|++.+..      +|+.+|++.+++++++.+..+++
T Consensus       316 ~~~~~~~~~~~~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        316 ITLGSQQTKVASPKLVNFILTCGTIGTMLTFVVTSPIVAHF------GLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHccCCCHHHHHHHHHhhhHHHHHHHHHHHHHHHHh------CchhhhhhhHHHHHHHHHHHHHH
Confidence            33344555655577788899999999999999999998863      58889988888877775544443

>PRK10489 enterobactin exporter EntS; Provisional

Probab=96.76  E-value=0.0044  Score=52.55  Aligned_cols=63  Identities=10%  Similarity=0.063  Sum_probs=47.5

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      .+...|..| ++.+...++.+...+++.+++|.+.|.+.+.      .+|++.|.+.+...+++.+....
T Consensus       132 ~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~------~~~~~~~~~~~~~~~~~~~~~~~  195 (417)
T PRK10489        132 LAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAA------GGVAWNYGLAAAGTFITLLPLLR  195 (417)
T ss_pred             hhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHH------HhhHHHHHHHHHHHHHHHHHHHh
Confidence            344446555 5678999999999999999999999988775      36888888877776666554433

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.71  E-value=0.024  Score=48.59  Aligned_cols=119  Identities=13%  Similarity=0.141  Sum_probs=66.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhc--cC--CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAP--NF--SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS   92 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~--~~--~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g   92 (171)
                      .+..+..||.....|....++..+.  ..  ..+...-+....+.-...++..........++.| ++.+...++.+...
T Consensus        60 ~l~~r~G~r~~~~~g~~l~~~g~~l~~~~~~~~~~~~~l~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  139 (410)
T TIGR00885        60 IFMKKLSYKAGILLGLFLYALGAFLFWPAAEIMNYTLFLVGLFILTAGLGFLETAANPYILVMGPESTATRRLNLAQSFN  139 (410)
T ss_pred             HHHHHhCchHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHhhHHHHHhhhhHHHHHHCCHhHHHHHHHHHHHHH
Confidence            5667778888887777665543221  11  1122211111111111112222222233335555 56788899999999


Q ss_pred             hhhhhhhhhhhheeecCCCc--------------------cccCChhHHHHHHHHHHHHHHHhh
Q psy15816         93 SFGGFVSSHIVGVLTDGDKV--------------------RHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        93 ~l~gii~p~i~G~iv~~~~~--------------------~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      +++..++|.+.+.+......                    .+..+||.+|.+.+.+.++..+.+
T Consensus       140 ~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~~a~~~~~~~~~~  203 (410)
T TIGR00885       140 PFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMIIGAVVLAVALLI  203 (410)
T ss_pred             HHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            99999999987766533100                    011359999998887766555444

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.62  E-value=0.015  Score=49.18  Aligned_cols=54  Identities=9%  Similarity=0.180  Sum_probs=42.3

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      +...++.+...+++.+++|.+.|++.++      -+||..|++.+.+.++..+...++.+
T Consensus       142 ~~~~~~~~~~~~lg~~~g~~i~~~l~~~------~gw~~~f~~~~~~~~~~~~~~~~~~~  195 (393)
T PRK15011        142 VMFSSFLRAQVSLAWVIGPPLAYALAMG------FSFTVMYLSAAVAFIVCGVMVWLFLP  195 (393)
T ss_pred             HHHHHHHHHHHHHHHHHhhHHHHHHHHh------cChHHHHHHHHHHHHHHHHHHHhhcC
Confidence            4556888999999999999999998775      37999999988877766655444433

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.58  E-value=0.023  Score=51.56  Aligned_cols=113  Identities=10%  Similarity=0.182  Sum_probs=63.9

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhh--hccCCcc--h-HHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHH
Q psy15816         17 AMFTLALTFNGAVTAGYLGNGLDI--APNFSED--P-IFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANT   90 (171)
Q Consensus        17 ~~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~--~-~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~   90 (171)
                      ..++-...||.+...|.+...+-.  ... ..+  . ..+..+..++.+....    ......|+.| +|.+...++...
T Consensus        99 G~LSDlfGRr~~~i~g~~l~vvG~Iv~at-A~~~~~~iag~~l~GvgaG~~~~----~~~~isEl~p~k~R~~~~~~~~~  173 (599)
T PF06609_consen   99 GRLSDLFGRRYFFIIGSLLGVVGSIVCAT-AQNMNTFIAGMVLYGVGAGVQEL----AALAISELVPNKWRGLGLAIASI  173 (599)
T ss_pred             HHHHHHhcchHHHHHHHHHHHhHHHHhhc-CCcHHHHHHHHHHHHHhhHHHHH----HHHHHHHhcccchhhhHhHHHHH
Confidence            357778889999988877665432  222 122  1 1223332222222111    1223457777 676666665555


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .......++|.+...+..+      .+||+.|++.+++..++.+...++.
T Consensus       174 ~~i~~~~~~~~ia~~~~~~------~~WRw~~~~~~i~~~i~~vl~~~fY  217 (599)
T PF06609_consen  174 PFIITTWISPLIAQLFAAH------SGWRWIFYIFIIWSGIALVLIFFFY  217 (599)
T ss_pred             HHHhhhcccHHHHHHhccC------CCcchHHHHHHHHHHHHHHHHHHHh
Confidence            5445455667765554332      5799999998887777665544443

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09528 lacY galactoside permease; Reviewed

Probab=96.58  E-value=0.0039  Score=53.02  Aligned_cols=58  Identities=19%  Similarity=0.194  Sum_probs=44.3

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816         81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ  145 (171)
Q Consensus        81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q  145 (171)
                      .|..+|..+..++++..++|.+.|.+.+.       +|+.+|++.+++.++..+.+....+++++
T Consensus       139 ~g~~~g~~~~~~~~g~~i~~~~~g~l~~~-------~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  196 (420)
T PRK09528        139 SGFEYGRARMWGSLGWALCAFIAGILFNI-------NPQINFWLGSGSALILLVLLFFAKPDAPS  196 (420)
T ss_pred             ccccchhhHHhhhHHHHHHHHHHHHHHhc-------CchHhHHHHHHHHHHHHHHHhcccccccc
Confidence            47788999999999999999999988653       58899998887777766665555444333

>PRK10054 putative transporter; Provisional

Probab=96.58  E-value=0.0075  Score=51.21  Aligned_cols=73  Identities=19%  Similarity=0.343  Sum_probs=49.7

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN  148 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~  148 (171)
                      .....+.+| +..|..++..+ .+.++..++|.+.|++.++.      +.+..|.+.+....+..+.  .+.+.++.||.
T Consensus       320 ~~~~~~~~p~~~~~~~~~~~~-~~~~G~~~Gp~~~G~l~~~~------g~~~~~~~~~~~~~~~~~~--~~~~~~~~~~~  390 (395)
T PRK10054        320 YMLIDHIAPPGMKASYFSAQS-LGWLGAAINPLVSGVILTTL------PPWSLFVILALAIVAAWLL--MLKGMRARPWG  390 (395)
T ss_pred             HHHHHHhCCcccceehHhHHH-HHHHHHHHHHHHHHHHHHHc------ChhhHHHHHHHHHHHHHHH--HHhccccCccc
Confidence            334446667 46677787655 67789999999999999873      4666776655554444432  23566778998


Q ss_pred             CCC
Q psy15816        149 TPK  151 (171)
Q Consensus       149 ~~~  151 (171)
                      +|.
T Consensus       391 ~~~  393 (395)
T PRK10054        391 QPA  393 (395)
T ss_pred             CCc
Confidence            874

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=96.57  E-value=0.011  Score=56.78  Aligned_cols=71  Identities=11%  Similarity=-0.040  Sum_probs=51.3

Q ss_pred             hhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++..+...+...|+.| +..+..+|+.++..+++.+++|.+.|++.+.      .+|+..|...+.+.+++.++...+
T Consensus       123 a~~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~------~~~~~~~~~~~~~~~~~~~~~~~~  194 (1140)
T PRK06814        123 ALFGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATIS------GNFVILVALLMGIAVLGWLASLFI  194 (1140)
T ss_pred             HhhchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhc------cccHHHHHHHHHHHHHHHHHHhhC
Confidence            3334445555567666 5679999999999999999999999999886      469999855555555554444333

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=96.51  E-value=0.0037  Score=52.65  Aligned_cols=49  Identities=18%  Similarity=0.218  Sum_probs=38.5

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      +..+|.....++++..++|.+.|.+.+       .+|+..|++.+.+.++..+...
T Consensus       132 ~~~~g~~~~~~~~g~~~g~~~~g~l~~-------~~~~~~f~~~~~~~~~~~~~~~  180 (396)
T TIGR00882       132 NFEYGKARMFGCVGWALCASIAGILFS-------IDPQIVFWLGSGFALILMLLLM  180 (396)
T ss_pred             ccccchhhhhcccHHHHHHHHHhhhhc-------cCchHHHHHHHHHHHHHHHHHH
Confidence            556788889999999999999887754       2599999998887776665443

>TIGR00891 2A0112 putative sialic acid transporter

Probab=96.51  E-value=0.0094  Score=49.41  Aligned_cols=52  Identities=15%  Similarity=0.192  Sum_probs=42.0

Q ss_pred             hhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHH
Q psy15816         69 YLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVL  125 (171)
Q Consensus        69 ~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~  125 (171)
                      ......|..| +..|.++|+.+..+++++.++|.+.|++.+..     ++|+.+|...
T Consensus       349 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~~~~-----g~~~~~~~~~  401 (405)
T TIGR00891       349 LPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGALLAQRL-----DEYGTALASL  401 (405)
T ss_pred             HHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHHHHHhc-----cccchhHHhh
Confidence            3445557677 56899999999999999999999999998874     5688777653

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=96.47  E-value=0.017  Score=51.57  Aligned_cols=88  Identities=16%  Similarity=0.089  Sum_probs=61.0

Q ss_pred             cchHHHHHHHHHHHHhhhhcchhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHH
Q psy15816         46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMV  124 (171)
Q Consensus        46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i  124 (171)
                      .+.+.+...+.+.............+..+...|+ +.|-++++.++....+..++..+.|.+.+..      +-+.++.+
T Consensus       305 ~~~~~~~~~l~l~G~~~~~~~~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~------g~~~al~~  378 (524)
T PF05977_consen  305 PSFWLALIALFLAGAAWIIANSSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHF------GVRTALLI  378 (524)
T ss_pred             hHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHh------CHHHHHHH
Confidence            4444444444443333333344555666777785 4899999999999999999999999998763      46677888


Q ss_pred             HHHHHHHHHHhhhhe
Q psy15816        125 LTTTYTVGAIVFLIF  139 (171)
Q Consensus       125 ~a~i~~~g~i~~~~~  139 (171)
                      .++.++++.++....
T Consensus       379 a~~~lll~~~~~~~~  393 (524)
T PF05977_consen  379 AGAALLLSALIALRF  393 (524)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            887777777766554

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=96.46  E-value=0.0071  Score=52.82  Aligned_cols=112  Identities=11%  Similarity=0.036  Sum_probs=60.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFG   86 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~g   86 (171)
                      .++.+..||.....+.....+..  ..+ ..+..    ++..++.+.=.+.|+..++.    .+...|..| ++.|...+
T Consensus        79 ~l~Dr~Grr~~l~~~~~l~~i~~~~~a~-~~~~~~~g~~a~~~l~~~R~l~G~g~g~~~~~~~~~~~e~~p~~~Rg~~~~  157 (490)
T PRK10642         79 MLGDKYGRQKILAITIVIMSISTFCIGL-IPSYATIGIWAPILLLLCKMAQGFSVGGEYTGASIFVAEYSPDRKRGFMGS  157 (490)
T ss_pred             HHHHhcccHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHHHHHHHHhHhHhhHHHHHHHHHHhCCCCCCcHHHH
Confidence            35667788887777766655432  222 12221    11122333333334433333    344456676 56788888


Q ss_pred             HHHHHHhhhhhhhhhh----hheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816         87 LANTLSSFGGFVSSHI----VGVLTDGDKVRHFRPWQYVFMVLTTTYTVG  132 (171)
Q Consensus        87 i~n~~g~l~gii~p~i----~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g  132 (171)
                      +.+....++.++++.+    .+++.+...  ...+||..|++.+.+.+++
T Consensus       158 ~~~~~~~~G~~lg~~~~~~~~~~~~~~~~--~~~gWR~~f~i~~~~~l~~  205 (490)
T PRK10642        158 WLDFGSIAGFVLGAGVVVLISTIVGEANF--LDWGWRIPFFIALPLGIIG  205 (490)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHh--cCccHHHHHHHHHHHHHHH
Confidence            8887776666666544    333322100  1257999999976555543

>KOG0255|consensus

Probab=96.46  E-value=0.013  Score=51.42  Aligned_cols=120  Identities=13%  Similarity=0.157  Sum_probs=74.2

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh-ccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA-PNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~-~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~g~l~   95 (171)
                      -++.+.+||.....+.+...++-. ..+..|...-.++-.+.-.+.+......+....| +.|++.+.+..+ ......+
T Consensus       140 ~lsD~~GRk~~~~~~~~~~~i~~~~~a~a~~~~~~~~~Rfl~G~~~~~~~~~~~~~~~E~~~~~~R~~~~~~-~~~~~~~  218 (521)
T KOG0255|consen  140 PLSDRFGRKPVLLVSLLLFIIFGILTAFAPNYWMFLIFRFLSGFFGSGPLTVGFGLVAEIVSPKQRGLALTL-GGFFFVG  218 (521)
T ss_pred             ehHhhcccHHHHHHHHHHHHHHHHHHHHhCcHHHHHHHHHHHHhhccchhHHhHhhheeecCcchhhHHHHH-HHHHHHH
Confidence            366678999999888887776532 2223443332332222222222222222344456 446788888888 8888888


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccCCC
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQPWN  148 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w~  148 (171)
                      +.+.|...+++.+        +||+.+++......+..+.+  +...|-..|-
T Consensus       219 ~~~~~~~~a~~~~--------~Wr~~~~~~~~~~~~~~~~~--~l~~Es~rwl  261 (521)
T KOG0255|consen  219 GLMLPAGAAYITR--------DWRWLFWIISIPSGLFLLLW--FLPPESPRWL  261 (521)
T ss_pred             HHHHHHHHHHHHh--------hHHHHHHHHHHHHHHHHHHH--HccCcChHHH
Confidence            8999999888855        59999998777766655542  3334556663

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=96.44  E-value=0.021  Score=48.98  Aligned_cols=69  Identities=14%  Similarity=0.239  Sum_probs=46.4

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      .+...|..| ++.|...++.+....++.++++.+.+.+.+....  -...+||.+|.+.+...++..+...+
T Consensus       142 ~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~  213 (479)
T PRK10077        142 PMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYF  213 (479)
T ss_pred             HHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHc
Confidence            444457777 6689999999999999999888765544321100  01247999999887777666554433

>KOG0252|consensus

Probab=96.40  E-value=0.0057  Score=53.87  Aligned_cols=127  Identities=18%  Similarity=0.159  Sum_probs=87.8

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhh----ccC-CcchHHHHHHHHHHHHhhhhc-chhhhhhhhcccc-chHHHHHHHHH
Q psy15816         17 AMFTLALTFNGAVTAGYLGNGLDIA----PNF-SEDPIFAVAMFTLALTFNGAV-TAGYLGNGLDIAP-NFSGTIFGLAN   89 (171)
Q Consensus        17 ~~l~l~~ark~~~~~G~~~~~l~l~----~~~-~~~~~~av~ll~la~~~~~~~-~~g~~~~~~diap-~~ag~v~gi~n   89 (171)
                      ..+.-.+.||..+..|+....++.+    ++. ..+....+.+.++..++..+. .+.....+.++.| +..|+--||+.
T Consensus       369 v~~id~iGRk~iq~~GF~~~~i~~~~~~~~y~~~~~~~Gf~v~y~l~~ff~NFGPn~ttfivpaE~FParvR~t~hGIsA  448 (538)
T KOG0252|consen  369 VYFIDIIGRKYIQLMGFFIMTIFFFVIAGPYNQLENTIGFVVLYSLTFFFGNFGPNATTFIVPAEIFPARVRSTCHGISA  448 (538)
T ss_pred             EEEeehhhhHHHHHhhHHHHHHHHHHHcCCcccccccCceeehHHHHHHHHhcCCCceeEEeehhhchHHHhhhhhhHHH
Confidence            3455678999999999988876432    222 123333444555555554432 1222345667778 67899999999


Q ss_pred             HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816         90 TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL  144 (171)
Q Consensus        90 ~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~  144 (171)
                      ..|-++++++....+++++++.- ...+.+.+|++.+++++.|.++.+++-..+.
T Consensus       449 A~GK~GAivg~~~F~~~t~~~yp-~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk~  502 (538)
T KOG0252|consen  449 ASGKAGAIVGAFGFLYLTDHNYP-PNIGVRNVFIILAGCMLLGILFTLLIPETKG  502 (538)
T ss_pred             HhccchHHHHHHHhhHhhhccCC-ccccchHHHHHHHHHHHHhHheeEEeecccc
Confidence            99999999999998888884311 1246889999999999999998887754333

>PTZ00207 hypothetical protein; Provisional

Probab=96.39  E-value=0.025  Score=51.35  Aligned_cols=70  Identities=16%  Similarity=0.233  Sum_probs=46.8

Q ss_pred             hhhhhccccchHHHHHHHHHHHHhhhhhh-hhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee-cccccCC
Q psy15816         70 LGNGLDIAPNFSGTIFGLANTLSSFGGFV-SSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG-TGQLQPW  147 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~~g~l~gii-~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~-~~e~q~w  147 (171)
                      .....+..|++.|.+.|+.+....+++.+ +|+..+++.        ++|+..|++.+.+.++..+++..+. ..+...|
T Consensus       142 ~~~i~~~Fp~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~--------~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~  213 (591)
T PTZ00207        142 VVTVLSVFPSNRGAVVAIMKTFTGLGSAILGSIQLAFFS--------DNTSAYFFFLMSFALVVGILAIVFMRLPPFHLT  213 (591)
T ss_pred             HHHHHHhChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHH--------HhHHHHHHHHHHHHHHHHHHHHhheeCCcchhh
Confidence            33445666877899999999999999975 555566542        2477888887777666655555543 3333334

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=96.39  E-value=0.037  Score=47.78  Aligned_cols=116  Identities=11%  Similarity=0.103  Sum_probs=71.9

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhh----hhhcccc-chHHHHHHHHH
Q psy15816         16 VAMFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLG----NGLDIAP-NFSGTIFGLAN   89 (171)
Q Consensus        16 ~~~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~----~~~diap-~~ag~v~gi~n   89 (171)
                      +..++-+.-||......+..-.+. ++.....|...    +.++=...++..+.+|.    ...++.| ++.+...++++
T Consensus        68 l~~lt~r~~Rr~lLl~~l~lFi~~n~l~alAp~f~~----Ll~aR~~~g~a~G~f~~i~~~~a~~lvpp~~~~~Aiaiv~  143 (394)
T COG2814          68 LALLTGRLERRRLLLGLLALFIVSNLLSALAPSFAV----LLLARALAGLAHGVFWSIAAALAARLVPPGKRGRALALVF  143 (394)
T ss_pred             HHHHHcccchHHHHHHHHHHHHHHHHHHHHhccHHH----HHHHHHHHHHHHHHHHHHHHHHHHHHcCccchhhHHHHHH
Confidence            345666777777664433322221 11111122222    22233333344344553    4456666 67899999999


Q ss_pred             HHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         90 TLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        90 ~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      +.-.++-+++..+..++-|.      -+||..|...+.+.++..+.-.....
T Consensus       144 ~G~tlA~v~GvPLGt~ig~~------~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         144 TGLTLATVLGVPLGTFLGQL------FGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHhccHHHHHHHH------hhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            99999999999998887665      47999999988887777665444443

>TIGR01272 gluP glucose/galactose transporter

Probab=96.38  E-value=0.017  Score=47.76  Aligned_cols=74  Identities=15%  Similarity=0.158  Sum_probs=50.7

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc----------ccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR----------HFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~----------~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      +....|+.| +++....++.+.+..++.+++|++.+.+......+          ....|+..+++.+.+.++..+++.+
T Consensus        32 n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~i~~~~  111 (310)
T TIGR01272        32 NPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLAIIFAF  111 (310)
T ss_pred             HHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            333445544 67788999999999999999999988777432100          0146999999777776666666665


Q ss_pred             eeccc
Q psy15816        139 FGTGQ  143 (171)
Q Consensus       139 ~~~~e  143 (171)
                      ...+|
T Consensus       112 ~~~p~  116 (310)
T TIGR01272       112 LPLPE  116 (310)
T ss_pred             ccCCC
Confidence            54443

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK12307 putative sialic acid transporter; Provisional

Probab=96.34  E-value=0.025  Score=47.77  Aligned_cols=40  Identities=23%  Similarity=0.094  Sum_probs=33.9

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      +....|..| +..|.+.|+.+..+.+++.++|.+.|++.+.
T Consensus       343 ~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~l~~~  383 (426)
T PRK12307        343 PKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATWLGIT  383 (426)
T ss_pred             HHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHHHHHc
Confidence            344567777 5689999999999999999999999998776

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=96.32  E-value=0.03  Score=49.48  Aligned_cols=85  Identities=7%  Similarity=-0.066  Sum_probs=56.0

Q ss_pred             hhhhcchhhhhhhhccccc---hHHHHHHHHHHHHhhhhhhhhhhhheee--c---CCCcc----ccCChhHHHHHHHHH
Q psy15816         61 FNGAVTAGYLGNGLDIAPN---FSGTIFGLANTLSSFGGFVSSHIVGVLT--D---GDKVR----HFRPWQYVFMVLTTT  128 (171)
Q Consensus        61 ~~~~~~~g~~~~~~diap~---~ag~v~gi~n~~g~l~gii~p~i~G~iv--~---~~~~~----~~~~w~~vF~i~a~i  128 (171)
                      ......+.+.+...|+.|+   +.+...++.+...++++++++.+.|+..  +   ...+.    -..+.+.+|++.+++
T Consensus       127 ~~n~~~~p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~  206 (477)
T TIGR01301       127 ANNMLQGPCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIIL  206 (477)
T ss_pred             HHHHHHHHHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHH
Confidence            3344445666777898883   3468899999999999999988766531  1   00000    113789999998888


Q ss_pred             HHHHHHhhhheecccccC
Q psy15816        129 YTVGAIVFLIFGTGQLQP  146 (171)
Q Consensus       129 ~~~g~i~~~~~~~~e~q~  146 (171)
                      ++++.++-++.. +|+++
T Consensus       207 l~i~~l~t~~~v-~E~~~  223 (477)
T TIGR01301       207 LAILTYIALSAV-KENPL  223 (477)
T ss_pred             HHHHHHHHeeee-eccCC
Confidence            888877666554 44443

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK09952 shikimate transporter; Provisional

Probab=96.30  E-value=0.014  Score=50.18  Aligned_cols=113  Identities=12%  Similarity=0.041  Sum_probs=63.4

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFG   86 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~g   86 (171)
                      .+..+..||.....+.....+..  ..+ .++..    .+...+.+.-.+.|+..++.+    ....+..| ++.|...+
T Consensus        86 ~l~Dr~Grr~~l~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~  164 (438)
T PRK09952         86 HFGDRLGRKRMLMLTVWMMGIATALIGL-LPSFSTIGWWAPVLLVTLRAIQGFAVGGEWGGAALLAVESAPKNKKAFYSS  164 (438)
T ss_pred             HHHHhhccHHHHHHHHHHHHHHHHHHhc-CCcHHHHHHHHHHHHHHHHHHHHhhhcccHHHHHHHHHHhCCCCCCcHHHH
Confidence            45567788888877776665432  222 12221    122223333333444333333    34456666 56788888


Q ss_pred             HHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHHHHHHH
Q psy15816         87 LANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLTTTYTV  131 (171)
Q Consensus        87 i~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a~i~~~  131 (171)
                      ..+....++.++++.+.+.+......  ....+||.+|.+.+...++
T Consensus       165 ~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~  211 (438)
T PRK09952        165 GVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLI  211 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHH
Confidence            88888888888877665544321000  0114799999987665443

>TIGR00897 2A0118 polyol permease family

Probab=96.30  E-value=0.081  Score=44.78  Aligned_cols=36  Identities=11%  Similarity=-0.027  Sum_probs=28.6

Q ss_pred             hccc-cchHHHHHHHHHHHHhhhh-hhhhhhhheeecC
Q psy15816         74 LDIA-PNFSGTIFGLANTLSSFGG-FVSSHIVGVLTDG  109 (171)
Q Consensus        74 ~dia-p~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~  109 (171)
                      .+.. |++.|..+|+.+...+++. +++|.+.|++.+.
T Consensus       131 ~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~~~l~~~  168 (402)
T TIGR00897       131 VYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYSSYAIPA  168 (402)
T ss_pred             HHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccc
Confidence            3443 4678999999999999986 6789888888765

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=96.28  E-value=0.013  Score=49.92  Aligned_cols=68  Identities=16%  Similarity=0.138  Sum_probs=49.5

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      ...+...+.+| ++.|.++|+.++...+++.++|.+.|++.+++.  +.+..+..|...+.+.+++.+...
T Consensus       317 ~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~--~~~~~~~~~~~~~~~~~~~~~~~~  385 (400)
T PRK11646        317 ARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGK--ALNQPELPWMMLGIIGLITLLALY  385 (400)
T ss_pred             cHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHh--hcCCcchHHHHHHHHHHHHHHHHH
Confidence            33455557777 678999999999999999999999999998742  112345667666666666665543

>PRK10091 MFS transport protein AraJ; Provisional

Probab=96.27  E-value=0.028  Score=47.22  Aligned_cols=54  Identities=13%  Similarity=0.151  Sum_probs=41.4

Q ss_pred             HHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816         87 LANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ  145 (171)
Q Consensus        87 i~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q  145 (171)
                      ..+....++..++|.+.|++.+.+     ++|+.+|.+.+++.++.......+.+.++|
T Consensus       328 ~~~~~~~~g~~~Gp~~~G~l~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  381 (382)
T PRK10091        328 GGQIAFNLGSAIGAYCGGMMLTLG-----LAYNYVALPAALLSFAAMSSLLLYGRYKRQ  381 (382)
T ss_pred             HHHHHHHHHHHHHHHHhHHHHHcc-----cCcchHHHHHHHHHHHHHHHHHHHhhhhcc
Confidence            347788999999999999998864     579999999887776666655555555544

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=96.23  E-value=0.02  Score=49.84  Aligned_cols=65  Identities=18%  Similarity=0.366  Sum_probs=52.9

Q ss_pred             hhhccccc-hHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         72 NGLDIAPN-FSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        72 ~~~diap~-~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ...|.+|+ -+|++.|+.+.++-+ +...+....|+++|.      .+|..+|.+..+..+++.+.++.+.+.
T Consensus       370 ~a~e~~pK~AaGtA~Gf~Glf~Yl~Ga~~a~~~~g~i~d~------~gW~g~Fi~~~~~a~l~~lll~~~~~~  436 (448)
T COG2271         370 AAAEFVPKKAAGTATGFVGLFAYLIGAALAGLPLGYIADT------WGWDGGFIVLSIAALLAILLLLPVWNA  436 (448)
T ss_pred             HHhccccHhhccchhchhhhHHHHhhHHhcCCcceeeEec------CCCcchHHHHHHHHHHHHHHHHHHHhh
Confidence            44689995 589999999999999 777788889999886      369999999888888888777766443

>PRK11010 ampG muropeptide transporter; Validated

Probab=96.16  E-value=0.071  Score=46.85  Aligned_cols=66  Identities=17%  Similarity=0.125  Sum_probs=50.6

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      ....+...|..| ++.|...++.+....++.++++.+.+++.++.     .+||.+|++.+++.++..+...
T Consensus       126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~-----~GWr~~f~i~a~l~ll~~l~~~  192 (491)
T PRK11010        126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRY-----LGWQGMYWLMAALLIPCIIATL  192 (491)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-----cCHHHHHHHHHHHHHHHHHHHH
Confidence            344455557666 66799999999999999999999988887632     4799999998887776655433

>TIGR00883 2A0106 metabolite-proton symporter

Probab=96.07  E-value=0.034  Score=45.59  Aligned_cols=116  Identities=16%  Similarity=0.087  Sum_probs=63.1

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchH----HHHHHHHHHHHhhhhcchh----hhhhhhcccc-chHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPI----FAVAMFTLALTFNGAVTAG----YLGNGLDIAP-NFSGTIFG   86 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~----~av~ll~la~~~~~~~~~g----~~~~~~diap-~~ag~v~g   86 (171)
                      .++.+..||.....+.....+..  .++. .+..    ....++.+.-.+.|...+.    ......|..| +..+...+
T Consensus        57 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~~~r~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~  135 (394)
T TIGR00883        57 HFGDRIGRKKTLVITLLMMGIGTLLIGLL-PSYATIGIWAPILLLLARLIQGFSLGGEWGGAALYLAEYAPPGKRGFYGS  135 (394)
T ss_pred             hhhhhhhhHHHHHHHHHHHHHHHHHHhhC-CChhhhHHHHHHHHHHHHHHHHhhccccccccHHHhhhcCCcccchHHHH
Confidence            34567778887777766555432  2221 2211    1111222233333332222    2333445555 56788999


Q ss_pred             HHHHHHhhhhhhhhhhhheeecCCC--ccccCChhHHHHHHHHHHHHHHH
Q psy15816         87 LANTLSSFGGFVSSHIVGVLTDGDK--VRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        87 i~n~~g~l~gii~p~i~G~iv~~~~--~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      +.+....++.+++|.+.+.+...-.  .....+||..|.+.+.+.+++..
T Consensus       136 ~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~  185 (394)
T TIGR00883       136 FQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLY  185 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHH
Confidence            9999988888888887554432100  00124799999887766655543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=96.06  E-value=0.054  Score=45.83  Aligned_cols=44  Identities=14%  Similarity=0.197  Sum_probs=33.8

Q ss_pred             chhhhhhhhccc--------cchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         66 TAGYLGNGLDIA--------PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        66 ~~g~~~~~~dia--------p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      .+..++...|..        ++..|..+|+.|+...+++.+++.+.|++.+.
T Consensus       329 ~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g~ll~~  380 (437)
T TIGR00792       329 TGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVGLILGI  380 (437)
T ss_pred             HHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344455555543        34579999999999999999999999988754

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>KOG2615|consensus

Probab=96.04  E-value=0.0076  Score=51.98  Aligned_cols=124  Identities=12%  Similarity=0.066  Sum_probs=75.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHH-HHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMF-TLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll-~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .++-+..||..+.+|..+.++...-+ +.+..++.+.+ -.-.+..-.+.+-..+...|+.+ ++.+..++.+++...++
T Consensus        90 ~~SD~yGRkpvll~c~~~va~s~ll~-~~S~~F~afv~aR~l~Gi~kgnl~v~rAiisdV~sek~r~l~ms~v~~a~~lG  168 (451)
T KOG2615|consen   90 CLSDRYGRKPVLLACLIGVALSYLLW-ALSRNFAAFVLARFLGGIFKGNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLG  168 (451)
T ss_pred             hhhhhhCchHHHHHHHHHHHHHHHHH-HHHHHHHHHHHHHHhhhhccCchHHHHHHHHhhcChhhccceeeeeehhhhcc
Confidence            67889999999999998888754433 23332222222 11222222223344566678876 78899999999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHH-HHHHHHHHHHHHhhhheecccc
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVF-MVLTTTYTVGAIVFLIFGTGQL  144 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF-~i~a~i~~~g~i~~~~~~~~e~  144 (171)
                      -+++|++-|++.+-.  +..++|-.++ -+...++..+.+.+..+.-+|.
T Consensus       169 filGPmIGgyla~f~--~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpET  216 (451)
T KOG2615|consen  169 FILGPMIGGYLAQFS--SISGSYPFALPCLLVFILAAGDVTFFPWFLPET  216 (451)
T ss_pred             hhhcchhhhHHHhhH--hhhccCchHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            999999999998821  0224554444 2333444444333333333333

>PF13347 MFS_2: MFS/sugar transport protein

Probab=96.04  E-value=0.026  Score=48.25  Aligned_cols=78  Identities=14%  Similarity=0.139  Sum_probs=51.9

Q ss_pred             cchhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccC-ChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         65 VTAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFR-PWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        65 ~~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~-~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      ....+.+...|+.+  +....+.+..+..+.+++++...+.+.+.+....+... +|+....+.+++.+++.++.....+
T Consensus       120 ~~i~~~al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~k  199 (428)
T PF13347_consen  120 VQIPYNALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVK  199 (428)
T ss_pred             ccCchhhcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheee
Confidence            34555666667776  34678888888888888876666666666433211122 6999998888888877776555543


Q ss_pred             c
Q psy15816        142 G  142 (171)
Q Consensus       142 ~  142 (171)
                      .
T Consensus       200 e  200 (428)
T PF13347_consen  200 E  200 (428)
T ss_pred             e
Confidence            3

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=96.00  E-value=0.045  Score=46.81  Aligned_cols=113  Identities=14%  Similarity=0.045  Sum_probs=59.2

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh--hccCCcch----HHHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHHH
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDP----IFAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFGL   87 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~----~~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~gi   87 (171)
                      ++.+..||.....+.....+..  ..+. .+.    ..+...+.+.=...|+..++.    .+...|..| ++.|...++
T Consensus        86 l~Dr~Grr~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~~l~~~R~l~G~g~g~~~~~~~~~i~e~~p~~~rg~~~~~  164 (432)
T PRK10406         86 IADKHGRKKSMLISVCMMCFGSLVIACL-PGYETIGTWAPALLLLARLFQGLSVGGEYGTSATYMSEVAVEGRKGFYASF  164 (432)
T ss_pred             HHHhcCcHHHHHHHHHHHHHHHHHHhhc-CCchhHHHHHHHHHHHHHHHHHhhhhhhHhhHHHHHHHhCCCCcccHHHHH
Confidence            5777888887777666654422  1111 111    112223333333334333333    344456666 567888888


Q ss_pred             HHHHHhhhhhhhhhhhheeecCCC--ccccCChhHHHHHHHHHHHHH
Q psy15816         88 ANTLSSFGGFVSSHIVGVLTDGDK--VRHFRPWQYVFMVLTTTYTVG  132 (171)
Q Consensus        88 ~n~~g~l~gii~p~i~G~iv~~~~--~~~~~~w~~vF~i~a~i~~~g  132 (171)
                      .+...+.+.++++.+...+...-.  .....+||..|.+.++..++.
T Consensus       165 ~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~  211 (432)
T PRK10406        165 QYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVA  211 (432)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHH
Confidence            777666666666654333221000  001257999999877666554

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=95.99  E-value=0.076  Score=45.77  Aligned_cols=94  Identities=29%  Similarity=0.341  Sum_probs=62.1

Q ss_pred             HHHHHHHHHHHHhhhhcchhhhh----hhhcccc-chHHHHHHHHHHH-HhhhhhhhhhhhheeecCCCccccCChhHHH
Q psy15816         49 IFAVAMFTLALTFNGAVTAGYLG----NGLDIAP-NFSGTIFGLANTL-SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVF  122 (171)
Q Consensus        49 ~~av~ll~la~~~~~~~~~g~~~----~~~diap-~~ag~v~gi~n~~-g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF  122 (171)
                      +.......++..+.|...+.++.    ...+.+| +..++..++.+.. ..+++.++..+.|++.|+-..+..-.|..+|
T Consensus       298 ~~~~~~~~l~q~lhG~tf~~~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~  377 (400)
T PF03825_consen  298 PFIVALQLLGQLLHGLTFGLFHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVF  377 (400)
T ss_pred             HHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHH
Confidence            33333333333344444444443    2335667 5678899988876 4688999999999999874321223578889


Q ss_pred             HHHHHHHHHHHHhhhheecc
Q psy15816        123 MVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus       123 ~i~a~i~~~g~i~~~~~~~~  142 (171)
                      .+.+++.++..+.|.++.|+
T Consensus       378 ~v~a~~~~~~~~~f~~~fk~  397 (400)
T PF03825_consen  378 LVFAVMALVILVLFVILFKP  397 (400)
T ss_pred             HHHHHHHHHHHHHHHhhccC
Confidence            99999888888888887654

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.99  E-value=0.031  Score=47.40  Aligned_cols=66  Identities=15%  Similarity=0.127  Sum_probs=48.8

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +...+...|+.| +..+.+.|+.+...+++.+++|.+.|++.+.       .|+..|.+.+..++++.+....+
T Consensus       107 pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~-------~~~~~~~i~~~~~~~~~~~~~~l  173 (393)
T PRK11195        107 PAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADP-------HAEAALAVCALIYLLAALFNLFI  173 (393)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-------HHHHHHHHHHHHHHHHHHHHhcC
Confidence            444455567777 5679999999999999999999999998774       28888887776666555444333

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=95.96  E-value=0.038  Score=52.78  Aligned_cols=90  Identities=10%  Similarity=-0.049  Sum_probs=52.4

Q ss_pred             HHHHHHHHHHHHhhHHHHhhh----hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhh
Q psy15816         20 TLALTFNGAVTAGYLGNGLDI----APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSF   94 (171)
Q Consensus        20 ~l~~ark~~~~~G~~~~~l~l----~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l   94 (171)
                      +-+..||.....+.+...+..    +.....+.+...++..+.-...++..+...+...|+.| +..+.++|+.+...++
T Consensus        71 ~Dr~grk~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~r~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i  150 (1146)
T PRK08633         71 ADKFSKNRVIRIVKLFEVGLTLLIVLAYYLGWFWLAFAVTFLLGAQSAIYSPAKYGIIPELVGKENLSRANGLLEAFTIV  150 (1146)
T ss_pred             cccccHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHhhchHHHhhhHHhcCcccchhhhhHHHHHHHH
Confidence            335667777666554433211    11111222222222222222333333444555667776 5679999999999999


Q ss_pred             hhhhhhhhhheeecC
Q psy15816         95 GGFVSSHIVGVLTDG  109 (171)
Q Consensus        95 ~gii~p~i~G~iv~~  109 (171)
                      +.+++|.+.|++.+.
T Consensus       151 g~~lg~~l~~~l~~~  165 (1146)
T PRK08633        151 AILAGTALFSFLFES  165 (1146)
T ss_pred             HHHHHHHHHHHHHHh
Confidence            999999999988764

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=95.85  E-value=0.025  Score=48.54  Aligned_cols=65  Identities=29%  Similarity=0.502  Sum_probs=52.2

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhh-hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheeccc
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGG-FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQ  143 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e  143 (171)
                      ..+..| +..|...|+.|..+++++ +++|.+.|.+.++.      +|+.+|.+.+++.+++.+..+++.+.|
T Consensus       370 ~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       370 ALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhc------cchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            446667 567999999999999986 57999999998863      599999998888888877777665544

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=95.78  E-value=0.056  Score=47.70  Aligned_cols=65  Identities=18%  Similarity=0.368  Sum_probs=53.6

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+...++.| ++.+--+|+.++.+-..++++|++.|.+++.+     ++-|..|....++.++|.++....
T Consensus       402 Rs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~t-----g~~r~g~~~l~~lf~~gl~ll~~v  467 (477)
T PF11700_consen  402 RSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDAT-----GSQRYGFLFLLVLFLIGLILLFFV  467 (477)
T ss_pred             HHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHh-----CCchhHHHHHHHHHHHHHHHHhhc
Confidence            444456778 56799999999999999999999999999986     678888888888888888766443

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.77  E-value=0.081  Score=44.41  Aligned_cols=66  Identities=18%  Similarity=0.216  Sum_probs=49.3

Q ss_pred             hhcchhhhhhhhc-ccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         63 GAVTAGYLGNGLD-IAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        63 ~~~~~g~~~~~~d-iap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      +...+...+...+ ..| ++.|+.+++.|...++++.++|.+.|++.+.      .+|+..|...+.+.+++.+
T Consensus       318 g~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~------~G~~~~f~~~~~~~l~a~~  385 (390)
T TIGR02718       318 GITSVAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDR------FGYAGGFLSGTVLAVLAIL  385 (390)
T ss_pred             HHHHHHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHH------HccHHHHHHHHHHHHHHHH
Confidence            3333444444333 334 6789999999999999999999999999876      3588899888777766644

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=95.70  E-value=0.056  Score=45.81  Aligned_cols=63  Identities=10%  Similarity=-0.006  Sum_probs=43.7

Q ss_pred             hhhcchhhhhhhhccccch--HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHH
Q psy15816         62 NGAVTAGYLGNGLDIAPNF--SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTY  129 (171)
Q Consensus        62 ~~~~~~g~~~~~~diap~~--ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~  129 (171)
                      .++......+..++..|++  .|.++++.|...+++..++..+.+.+.+..     -.++..|...+.+.
T Consensus       307 ~g~~~~~~~~~~q~~~~~~~~~g~~~a~~~~~~~~~~~~~~~~~~~~~~~~-----~~~~~~~~~~~~~~  371 (393)
T PRK11195        307 GGFFVVPMNALLQHRGHVLVGAGHSIAVQNFNENLAMLLMLGLYSLLVKLG-----VPVVAVIVGFGLLV  371 (393)
T ss_pred             hhhhhhhHHHHHHhhCcccccchhHHHHHhHHHHHHHHHHHHHHHHHHHcC-----CCHHHHHHHHHHHH
Confidence            3433345566667777753  599999999999999999999988664432     35666666555553

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=95.70  E-value=0.036  Score=46.64  Aligned_cols=52  Identities=17%  Similarity=0.213  Sum_probs=41.2

Q ss_pred             chHHHHHHH-HHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         79 NFSGTIFGL-ANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        79 ~~ag~v~gi-~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      +..++..+. .|....+++++.|.+.|++.+.      .+|+.+|.+.+++.+++.++-
T Consensus       339 ~~~at~~~~~~~~~~~lg~~~~~~l~G~l~~~------~G~~~~f~~~~~~~~i~~~~~  391 (396)
T TIGR00882       339 RLSATIYLIGFQFAKQLAMIFLSTLAGNMYDS------IGFQGAYLVLGCIVLLFTLIS  391 (396)
T ss_pred             ceEEEeehHHHHHHHHHHHHHHHHhHHHHHHh------cccHHHHHHHHHHHHHHHHHH
Confidence            444555555 6789999999999999999886      359999999888887776653

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=95.41  E-value=0.093  Score=44.10  Aligned_cols=47  Identities=19%  Similarity=0.168  Sum_probs=38.2

Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHH
Q psy15816         79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTV  131 (171)
Q Consensus        79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~  131 (171)
                      +..+..+|.....++++.+++|.+.|++.+.      .+||..|.+.+.+.++
T Consensus       124 ~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~------~g~~~~f~~~~~~~~~  170 (382)
T TIGR00902       124 KQFGLDYGKVRLIGSAAFIIGSALFGGLIGM------FDEQNILAILTAGLAF  170 (382)
T ss_pred             HHcCCCccHHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHHHHH
Confidence            3457889999999999999999999999886      3699999887655433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.41  E-value=0.16  Score=42.95  Aligned_cols=73  Identities=18%  Similarity=0.114  Sum_probs=45.5

Q ss_pred             hhhhhhhhccc--cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         67 AGYLGNGLDIA--PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        67 ~g~~~~~~dia--p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..+.+...++.  |+..+...++.+..+++++++.+.+.+.+..... .....+|+..|.+.+++.++..+....+
T Consensus       118 ~~~~al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~  193 (437)
T TIGR00792       118 IPYWSLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFG  193 (437)
T ss_pred             ccHhhCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcC
Confidence            34455555554  3556888898888888887776665544442100 0012579999998888877666554443

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK10133 L-fucose transporter; Provisional

Probab=95.41  E-value=0.14  Score=44.28  Aligned_cols=89  Identities=15%  Similarity=0.130  Sum_probs=48.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhc----cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccch-HHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAP----NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNF-SGTIFGLANTLS   92 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~----~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~-ag~v~gi~n~~g   92 (171)
                      .+..+..||.....|.....+....    ....+...-.....+.-...+...........|..|+. .+...++.+...
T Consensus        83 ~l~dr~G~r~~l~~g~~~~~~~~~l~~~~~~a~~~~~ll~~r~l~G~g~g~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~  162 (438)
T PRK10133         83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN  162 (438)
T ss_pred             HHHHHhCcHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHhhHHHHHHHhCChhhHHHHHHHHHHHH
Confidence            5667778888887877666643321    11223322222111111112222223333344666644 345788999999


Q ss_pred             hhhhhhhhhhhhee
Q psy15816         93 SFGGFVSSHIVGVL  106 (171)
Q Consensus        93 ~l~gii~p~i~G~i  106 (171)
                      .++..++|.+.+.+
T Consensus       163 ~~G~~~g~~~g~~l  176 (438)
T PRK10133        163 SFGAIIAVVFGQSL  176 (438)
T ss_pred             HHHHHHHHHHHHHH
Confidence            99999999885543

>TIGR00805 oat sodium-independent organic anion transporter

Probab=95.39  E-value=0.048  Score=49.73  Aligned_cols=87  Identities=15%  Similarity=0.175  Sum_probs=58.0

Q ss_pred             HHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc----------c-----
Q psy15816         55 FTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR----------H-----  114 (171)
Q Consensus        55 l~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~----------~-----  114 (171)
                      +.++-.+.|+..+..+    +...|..| +..+...|+.+....++..+++++.|++.+.-.+.          +     
T Consensus       175 ~~~~r~l~GiG~~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dpr  254 (633)
T TIGR00805       175 FLVSQLLRGIGATPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPR  254 (633)
T ss_pred             hHHHHHHHhccCCcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCcc
Confidence            3345555555544443    33446666 56899999999999999999999988876431000          0     


Q ss_pred             -cCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816        115 -FRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus       115 -~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                       .+.|+..|++.+++.++..+.+.++.+
T Consensus       255 WiGaWwl~Fli~g~l~~l~~v~l~~~p~  282 (633)
T TIGR00805       255 WIGAWWIGFLICGGVALLTSIPFFFFPK  282 (633)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHhCcc
Confidence             124788899988888777666555543

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR01272 gluP glucose/galactose transporter

Probab=95.35  E-value=0.099  Score=43.17  Aligned_cols=55  Identities=18%  Similarity=0.215  Sum_probs=38.5

Q ss_pred             hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHH
Q psy15816         63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMV  124 (171)
Q Consensus        63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i  124 (171)
                      +..++...+...+.-|++.+...++. ..+.+++.+.|.+.|.+.|..      +.+..|++
T Consensus       245 s~i~P~~~s~a~~~~~~~~~~asai~-~~~~~Gg~i~P~l~G~lad~~------g~~~a~~v  299 (310)
T TIGR01272       245 SIMFPTIFSLALNALGRHTSQGSGIL-CLAIVGGAIVPLLQGSLADCL------GIQLAFAL  299 (310)
T ss_pred             HHHHHHHHHHHHhhhhhhhhhhHHHH-HHHHhcchHHHHHHHHHHHhc------cchHHHHH
Confidence            33445545555554567778888885 678899999999999998863      35556654

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=95.31  E-value=0.16  Score=42.67  Aligned_cols=48  Identities=19%  Similarity=0.148  Sum_probs=38.0

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      .+...|..+..++++..++|.+.|++.++      .+||..|++.+...++..+
T Consensus       126 ~~~a~~~~~~~~~lg~~igp~lgg~l~~~------~g~~~~f~~~~~~~~~~~~  173 (382)
T PRK11128        126 IGLDYGKVRLWGSIAFVIGSALTGKLVSW------FGEQAILWILTAGVASMLL  173 (382)
T ss_pred             ccCCcchHHHHHHHHHHHHHHHHHHHHHH------cChhHHHHHHHHHHHHHHH
Confidence            46677788888899999999999999876      3699999887765555443

>PRK11043 putative transporter; Provisional

Probab=95.21  E-value=0.33  Score=40.75  Aligned_cols=43  Identities=26%  Similarity=0.226  Sum_probs=34.3

Q ss_pred             hhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         67 AGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        67 ~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      +.......+..|++.|.+.|+.|+....++...+.++|.+.+.
T Consensus       315 ~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~g~l~~~  357 (401)
T PRK11043        315 PIVVAQALRPFPQATGKAAALQNTLQLGLCFLASLLVSALIST  357 (401)
T ss_pred             HHHHHHHhhhCcccChHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            4444444565677889999999999999999999999988764

>PRK12382 putative transporter; Provisional

Probab=95.17  E-value=0.18  Score=42.24  Aligned_cols=50  Identities=10%  Similarity=0.038  Sum_probs=38.1

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT  128 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i  128 (171)
                      ..|..| ++.+..+++.+...+++..++|.+.+++.+.      .+|+.++.+...+
T Consensus       137 ~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~------~g~~~~~~~~~~~  187 (392)
T PRK12382        137 GLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSH------FGFAALALTTMVL  187 (392)
T ss_pred             HHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhc------cChHHHHHHHHHH
Confidence            345555 5679999999999999999999999888664      3699877765443

>PRK15075 citrate-proton symporter; Provisional

Probab=95.17  E-value=0.087  Score=45.12  Aligned_cols=108  Identities=9%  Similarity=-0.036  Sum_probs=58.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccCCcchHH----HHHHHHHHHHhhhhcc----hhhhhhhhcccc-chHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNFSEDPIF----AVAMFTLALTFNGAVT----AGYLGNGLDIAP-NFSGTIFG   86 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~----av~ll~la~~~~~~~~----~g~~~~~~diap-~~ag~v~g   86 (171)
                      .+..+..||.....+.....+..  .++. .+...    ....+.+.-.+.|+..    +.......|..| ++.|...+
T Consensus        78 ~l~Dr~Grr~~l~~~~~~~~~~~~l~~~~-~~~~~~~~~~~~~l~~~R~l~G~~~g~~~~~~~~~~~e~~p~~~rg~~~~  156 (434)
T PRK15075         78 AYIDRVGRRKGLIVTLSIMASGTLLIAFV-PGYATIGLAAPLLVLLGRLLQGFSAGVELGGVSVYLAEIATPGRKGFYTS  156 (434)
T ss_pred             HHhhhhchHHHHHHHHHHHHHHHHHHHhC-CcHHHHHHHHHHHHHHHHHHhhccccccHHHHHHHHHhhCCcccchHHHH
Confidence            55678888888877776554432  2222 22211    0011122222333332    233345567777 56799999


Q ss_pred             HHHHHHhhhhhhhhhhhheeecCCCc--cccCChhHHHHHHH
Q psy15816         87 LANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQYVFMVLT  126 (171)
Q Consensus        87 i~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~~vF~i~a  126 (171)
                      +.+...+++..+++.+.+.+...-..  ....+||..|++..
T Consensus       157 ~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~  198 (434)
T PRK15075        157 WQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGC  198 (434)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHH
Confidence            98888887777777665544211000  01247999998744

>TIGR00895 2A0115 benzoate transport

Probab=95.16  E-value=0.11  Score=42.70  Aligned_cols=45  Identities=18%  Similarity=0.217  Sum_probs=36.3

Q ss_pred             hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhhee
Q psy15816         62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVL  106 (171)
Q Consensus        62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~i  106 (171)
                      .+...+..++...|..| ++.|...|+.+..+.+++.++|.+.|++
T Consensus       352 ~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~g~~~~G~l  397 (398)
T TIGR00895       352 VNGGQSGLYALMALFYPTAIRATGVGWAIGIGRLGAIIGPILAGYL  397 (398)
T ss_pred             HHHHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHhHHhc
Confidence            33444556667778777 5689999999999999999999999876

>KOG1330|consensus

Probab=95.09  E-value=0.0089  Score=52.52  Aligned_cols=68  Identities=13%  Similarity=0.149  Sum_probs=51.5

Q ss_pred             hhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh-hhheeccc
Q psy15816         71 GNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV-FLIFGTGQ  143 (171)
Q Consensus        71 ~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~-~~~~~~~e  143 (171)
                      +...|..|+ ..+.++++.|+...+++.++-+..+++.+.+     ..||+.|...+++.++.++. +++...+|
T Consensus       144 s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~-----~~Wr~af~~~avl~vi~~~L~~~f~~eP~  213 (493)
T KOG1330|consen  144 SLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLT-----FWWRWAFRGSAVLGVIVGLLVFLFVREPE  213 (493)
T ss_pred             hHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCc-----cceEEEEEeehHHHHHHHHHHHhhccCcc
Confidence            344588884 5799999999999999998887777777765     56999999999887765554 44444333

>TIGR00883 2A0106 metabolite-proton symporter

Probab=94.95  E-value=0.067  Score=43.86  Aligned_cols=61  Identities=18%  Similarity=0.037  Sum_probs=42.2

Q ss_pred             cchhhhhhhhcccc-chHHHHHHHH-HHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816         65 VTAGYLGNGLDIAP-NFSGTIFGLA-NTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT  130 (171)
Q Consensus        65 ~~~g~~~~~~diap-~~ag~v~gi~-n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~  130 (171)
                      ..+..++...|..| +..+...|+. +....+++.++|.+.|++.++.     +.|+..++..+...+
T Consensus       329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~-----g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMT-----GDWYAIGYYLAALAL  391 (394)
T ss_pred             HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHc-----CcchhHHHHHHHHHH
Confidence            33445566667777 4567888874 4555678889999999998874     458877776555443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=94.89  E-value=0.2  Score=43.30  Aligned_cols=96  Identities=14%  Similarity=0.066  Sum_probs=64.9

Q ss_pred             hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhH
Q psy15816         41 APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQY  120 (171)
Q Consensus        41 ~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~  120 (171)
                      +++.+.+...+...+.+.-........+.+....+.+|+..+.+.++.+...|++-.++..+-|.+.++      .+|+.
T Consensus       293 l~~~~~~~~~~~~~~~~wg~a~~~~~~~~~~~~a~~~p~~~~~a~sl~~aa~nlgia~GA~lGG~v~~~------~g~~~  366 (394)
T COG2814         293 LTFTGASPALALALLFLWGFAFSPALQGLQTRLARLAPDAADLAGSLNVAAFNLGIALGAALGGLVLDA------LGYAA  366 (394)
T ss_pred             HHHhcchHHHHHHHHHHHHHHhhhhhhHHHHHhcccCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHh------hchHH
Confidence            344445555444444431111111122333333445678889999999999999999999999999887      47999


Q ss_pred             HHHHHHHHHHHHHHhhhheecc
Q psy15816        121 VFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus       121 vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ..++.+.+.+.+.+......+.
T Consensus       367 ~~~~~a~l~~~a~~~~~~~~~~  388 (394)
T COG2814         367 TGWVGAALLLLALLLALLSARK  388 (394)
T ss_pred             HHHHHHHHHHHHHHHHHHHHhc
Confidence            9999998888888776665443

>KOG3764|consensus

Probab=94.84  E-value=0.17  Score=44.03  Aligned_cols=111  Identities=20%  Similarity=0.205  Sum_probs=70.3

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhcc-CCcchHHHHHHHHHHHHhhhhcchhh----hhhhhccccch--HHHHHHHHHHH
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAPN-FSEDPIFAVAMFTLALTFNGAVTAGY----LGNGLDIAPNF--SGTIFGLANTL   91 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~~-~~~~~~~av~ll~la~~~~~~~~~g~----~~~~~diap~~--ag~v~gi~n~~   91 (171)
                      +..++.+|..+.+|+....+.-+-+ ++.+...-    .++=.+.|...+-.    .+...|.-|+.  .|.++|+.-++
T Consensus       129 l~~~iGy~ipm~~Gl~vmf~sTilFafg~sy~~l----~vAR~LQgvgsA~~~tsglamlAd~f~~d~er~~vmGialgf  204 (464)
T KOG3764|consen  129 LIDRIGYKIPMVAGLFVMFLSTILFAFGNSYPML----FVARSLQGVGSAFADTSGLAMLADVFPEDNERGSVMGIALGF  204 (464)
T ss_pred             hHHHhccccHHHHHHHHHHHHHHHHHHcchhHHH----HHHHHHhhhhHHHHHhhhHHHHHHHcccchhhhHHHHHHHHH
Confidence            3457788888888887766432222 22332221    12222222222222    34445666743  59999999999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      -.++-+++|.+-|.+=+-      .+++..|.+.+.+.++-+..-++.
T Consensus       205 islG~lvgPpfGGilYe~------~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  205 ISLGVLVGPPFGGILYEF------AGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HhccceecCCcccchHhh------cCCcCcHHHHHHHHHHHHHHHHhe
Confidence            999999999999988664      568889999888877655544433

>PRK10504 putative transporter; Provisional

Probab=94.82  E-value=0.18  Score=43.37  Aligned_cols=41  Identities=17%  Similarity=0.156  Sum_probs=31.0

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTD  108 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~  108 (171)
                      .......+..| +..|..+|+.++...+++.++|.+.|.+.+
T Consensus       373 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~ll~  414 (471)
T PRK10504        373 SMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAGLLLG  414 (471)
T ss_pred             HHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            33444444445 667999999999999999999999887754

>PRK15075 citrate-proton symporter; Provisional

Probab=94.76  E-value=0.27  Score=42.09  Aligned_cols=44  Identities=18%  Similarity=0.132  Sum_probs=32.7

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCC
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGD  110 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~  110 (171)
                      +..+....|..| +..|...|+.+..+.. ++.++|.+.|++++..
T Consensus       350 ~~~~~~~~e~~p~~~rg~~~g~~~~~~~~~~g~~~p~~~g~i~~~~  395 (434)
T PRK15075        350 GAMVVALTEVMPAEVRTAGFSLAYSLATAIFGGFTPAISTWLIHVT  395 (434)
T ss_pred             hhHHHHHHHHCCCCccchheeHHHHHHHHHHhhhHHHHHHHHHHhc
Confidence            344555667777 5678888987666665 5888999999998874

>TIGR00900 2A0121 H+ Antiporter protein

Probab=94.73  E-value=0.15  Score=41.35  Aligned_cols=43  Identities=21%  Similarity=0.142  Sum_probs=35.2

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      +...+...|..| +..|...|+.++..++++.++|.+.|++.+.
T Consensus       320 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~g~l~~~  363 (365)
T TIGR00900       320 VPQGTLLQRRVPAELLGRVFGAQFSLSHAAWPLGLILAGPLADH  363 (365)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555567666 6689999999999999999999999988764

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=94.65  E-value=0.56  Score=39.59  Aligned_cols=64  Identities=19%  Similarity=0.354  Sum_probs=42.2

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      +...+....+.+ ++-+...++.+....+++++.+.+.|.+.+.      -+|+.+|.+.+.+.+++.++.
T Consensus       322 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~------~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        322 AAFVALLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEA------YGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHHHHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHH
Confidence            333444443333 2234556666777777777666789988876      369999999888887776554

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=94.57  E-value=0.16  Score=42.48  Aligned_cols=53  Identities=6%  Similarity=-0.046  Sum_probs=40.1

Q ss_pred             hcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHH
Q psy15816         74 LDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVG  132 (171)
Q Consensus        74 ~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g  132 (171)
                      .|..| +..+.+.++.+....++..++|.+.+++.+.      .+|+..|.+.+.+.++.
T Consensus       138 ~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~------~g~~~~~~~~~~~~~~~  191 (399)
T PRK05122        138 IGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHW------GGLAGLGLLIMLLALLG  191 (399)
T ss_pred             HhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHc------ccHHHHHHHHHHHHHHH
Confidence            35444 5678899998888888889999999988775      36999888766554433

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=94.46  E-value=0.83  Score=38.42  Aligned_cols=38  Identities=18%  Similarity=-0.037  Sum_probs=31.1

Q ss_pred             hhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816         73 GLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD  110 (171)
Q Consensus        73 ~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~  110 (171)
                      ..+..|+..|.+.++.+....++..+++.+.|.+-+..
T Consensus       334 ~~~~~~~~~g~~~~~~~~~~~~~~~~g~~~~~~l~~~~  371 (406)
T PRK15402        334 TLFSSDVSKGTVSAAMGMLSMLIFTVGIELSKHAYLGG  371 (406)
T ss_pred             HhhhccccccHHHHHHHHHHHHHHHHHHHHHHhcccCC
Confidence            33444566799999999999999999999999887664

>KOG0569|consensus

Probab=94.40  E-value=0.32  Score=43.24  Aligned_cols=115  Identities=14%  Similarity=0.089  Sum_probs=63.8

Q ss_pred             HHHHHHHHHHHHHHHHhhHHHHh----hhhccCCcchHHHHHHHHHHHHhhhh----cchhhhhhhhcccc-chHHHHHH
Q psy15816         16 VAMFTLALTFNGAVTAGYLGNGL----DIAPNFSEDPIFAVAMFTLALTFNGA----VTAGYLGNGLDIAP-NFSGTIFG   86 (171)
Q Consensus        16 ~~~l~l~~ark~~~~~G~~~~~l----~l~~~~~~~~~~av~ll~la~~~~~~----~~~g~~~~~~diap-~~ag~v~g   86 (171)
                      ...++-+.+||...........+    .+......+    .-++.++=...|.    ..+..-.-..+++| +..|.+..
T Consensus        80 ~~~la~~~GRK~~l~~~~~l~~~~~~~~~~s~~~~~----~e~li~GR~i~Gl~~gl~~~~~pmyl~E~sP~~~RG~~g~  155 (485)
T KOG0569|consen   80 SGLLADRFGRKNALLLSNLLAVLAALLMGLSKSAPS----FEMLILGRLIVGLACGLSTGLVPMYLTEISPKNLRGALGT  155 (485)
T ss_pred             HHHHHHhhcchHHHHHHHHHHHHHHHHHHHHHHhhh----HHHHHHHHHHHHHHhHHHHHHHHHHHhhcChhhhccHHHH
Confidence            44678888999655444333322    112221111    1222222222222    22222233347999 67898888


Q ss_pred             HHHHHHhhhhhhhhhh-hheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         87 LANTLSSFGGFVSSHI-VGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        87 i~n~~g~l~gii~p~i-~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      +.+...+++-+++-.+ .-.+..+     ...|...+....+..++..+...++
T Consensus       156 ~~~~~~~~g~ll~~~~~l~~ilGt-----~~~W~~l~~~~~i~~~~~l~~l~~~  204 (485)
T KOG0569|consen  156 LLQIGVVIGILLGQVLGLPSLLGT-----EDLWPYLLAFPLIPALLQLALLPFL  204 (485)
T ss_pred             HHHHHHHHHHHHHHHHccHHhcCC-----CcchHHHHHHHHHHHHHHHHHHhcC
Confidence            8888888888777444 3333333     3579999988887776666554443

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=94.39  E-value=1.3  Score=37.08  Aligned_cols=47  Identities=17%  Similarity=0.233  Sum_probs=37.3

Q ss_pred             hhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         63 GAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        63 ~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      ++..+...+...|..|++.|...++.+...++++.+++.+.|++.++
T Consensus       314 ~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~~~~~~~~~~~~  360 (394)
T PRK11652        314 GMLFPLATSGAMEPFPYLAGTAGALLGGLQNIGSGLAALLSAMLPQT  360 (394)
T ss_pred             HHHHHHHHHHHHhhccccchHHHHHHHHHHHHHHHHHHHHHHHccCC
Confidence            33345556666677788889999999999999999999999987554

>KOG0253|consensus

Probab=94.24  E-value=0.12  Score=44.82  Aligned_cols=114  Identities=12%  Similarity=0.099  Sum_probs=69.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      .+.-+++||..+...+...++++.+.+.| +...-..++..+-++........+...-++-| .-.++-.|.....+-++
T Consensus       403 ~iverlGRKkTMal~l~~f~iflfll~~c~~rn~~tvllf~arafisg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIg  482 (528)
T KOG0253|consen  403 VIVERLGRKKTMALSLILFGIFLFLLTTCKTRNAYTVLLFTARAFISGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIG  482 (528)
T ss_pred             HHHHHhcchhHHHHHHHHHHHHHHHHHHhcCcchhHHHHHHHHHHHhchheEEEEecCcccchhhhhcchhhhhhHHhhh
Confidence            45566999999999999888877554323 33333334444433333222333455556667 34688889999999999


Q ss_pred             hhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         96 GFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        96 gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      |+++|.+.  +..+.     ...-.+|.. +++.+++++.-++|
T Consensus       483 gI~~p~iA--~~~e~-----s~sl~i~vy-~~~~ilagIavcff  518 (528)
T KOG0253|consen  483 GIFSPVIA--MRAEL-----STSLPIFVY-GALFILAGIAVCFF  518 (528)
T ss_pred             hhhhhHHH--HHhcc-----ceeehHHHH-HHHHHHHHHHheee
Confidence            99999987  32222     223445544 44555566655554

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=94.00  E-value=0.13  Score=41.94  Aligned_cols=47  Identities=28%  Similarity=0.480  Sum_probs=37.5

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHH
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVF  122 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF  122 (171)
                      +....+..| +..|...|+.+...++++.++|.+.|++.++      .+|+..|
T Consensus       332 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~g~~~~f  379 (379)
T TIGR00881       332 GVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADG------FGWAGAF  379 (379)
T ss_pred             HHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHh------hcccccC
Confidence            344556666 5689999999999999999999999999886      3566543

>PRK10429 melibiose:sodium symporter; Provisional

Probab=93.89  E-value=0.13  Score=44.82  Aligned_cols=30  Identities=10%  Similarity=0.257  Sum_probs=25.2

Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816         79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTD  108 (171)
Q Consensus        79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~  108 (171)
                      |..|..+|..++...++..+++.+.|++.+
T Consensus       363 R~~G~~~s~~~~~~K~~~al~~~i~g~~l~  392 (473)
T PRK10429        363 RCESIAYSVQTMVVKGGSAFAAFFIGVVLG  392 (473)
T ss_pred             cchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            346789999999999999999988887764

>TIGR00788 fbt folate/biopterin transporter

Probab=93.85  E-value=0.35  Score=42.27  Aligned_cols=56  Identities=14%  Similarity=0.192  Sum_probs=39.7

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHH
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFM  123 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~  123 (171)
                      ........+++| ++.|+.+++.+.+.++++.+++.+.|++.+.-. .+.++++..+.
T Consensus       370 ~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g-~~~~~~~~~~~  426 (468)
T TIGR00788       370 MPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIG-ITCDNSNNLWL  426 (468)
T ss_pred             ccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcC-CCcccccchHH
Confidence            344555667777 567999999999999999999988888876531 12234554444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>COG0738 FucP Fucose permease [Carbohydrate transport and metabolism]

Probab=93.85  E-value=0.4  Score=41.67  Aligned_cols=126  Identities=12%  Similarity=0.172  Sum_probs=77.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccC--CcchHH-----HHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPNF--SEDPIF-----AVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLAN   89 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~~--~~~~~~-----av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n   89 (171)
                      .+..+..+|.-+..|+...++...-+.  .....+     +.+.+..+.++.....   +.-..++.| +.+..-..+++
T Consensus        70 ~~~kk~gyk~gi~lgL~l~avg~~lF~pAa~~~~y~~FL~~lFila~Gi~~Letaa---Np~v~~lg~~~~a~~rlnl~q  146 (422)
T COG0738          70 LLIKKLGYKAGIVLGLLLYAVGAALFWPAASSKSYGFFLVALFILASGIGLLETAA---NPYVTLLGKPESAAFRLNLAQ  146 (422)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHhhhhhhhhHHHHHHHHHHHHhhhHHHHhcc---chHHHHhCCchhHHHHHHHHH
Confidence            677788888888888887776432221  122222     2333333344433322   222234444 55677788999


Q ss_pred             HHHhhhhhhhhhhhheeecCCC----c-------c--ccCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816         90 TLSSFGGFVSSHIVGVLTDGDK----V-------R--HFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP  146 (171)
Q Consensus        90 ~~g~l~gii~p~i~G~iv~~~~----~-------~--~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~  146 (171)
                      .+..++.+++|.+.++++..+.    +       +  ...+|+..+...+.+.++..+......-++.|+
T Consensus       147 ~fn~lGa~~gp~~g~~lils~~~~~~~~~~~~~~~~~~~~~v~~pYl~~~~~lvll~v~~~~~k~p~~~~  216 (422)
T COG0738         147 AFNGLGAILGPLLGSSLILSGVALTMSAAQILAIKGADASSVQFPYLILAGLLVLLAVLILLSKLPDLQV  216 (422)
T ss_pred             HhhhhHHHHHHHHHHHHHHhhhhhccCHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHhccCCcCCc
Confidence            9999999999999888876210    0       0  123577788888888887777666655455554

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=93.83  E-value=0.19  Score=48.09  Aligned_cols=62  Identities=13%  Similarity=0.083  Sum_probs=42.1

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHH
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGA  133 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~  133 (171)
                      ...++...+..| +..|.++|+.+++.++++++++.+.+.+....     .++...|.+.+.+.+++.
T Consensus       341 ~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~-----~~~~~~~~~~~~~~~~~~  403 (1146)
T PRK08633        341 VPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLG-----LSPAGLFYLIALVTLIGT  403 (1146)
T ss_pred             HHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHHHHH
Confidence            344555566666 56899999999999999988887766554421     356666766655544443

>KOG2504|consensus

Probab=93.81  E-value=0.17  Score=45.18  Aligned_cols=57  Identities=11%  Similarity=0.107  Sum_probs=46.8

Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      +++.+.+.|+......++.++.|.+.-++.+.      .+||..+++.+.+.+-+.+.-..+.
T Consensus       165 ~kkR~lA~Gia~~GsG~G~~~~~~l~~~l~~~------~G~r~~~l~~~~~~l~~~~~~~~~r  221 (509)
T KOG2504|consen  165 EKKRALATGIAVSGTGVGTVVFPPLLKYLLSK------YGWRGALLIFGGISLNVLVAGALLR  221 (509)
T ss_pred             HHHHHHHHhhhhccCCcceeeHHHHHHHHHHH------hCcHHHHHHHHHHHHHHHHHHHHcC
Confidence            45689999999999999999999999988886      5799999988888766655555443

>PRK03633 putative MFS family transporter protein; Provisional

Probab=93.79  E-value=2.1  Score=35.73  Aligned_cols=89  Identities=11%  Similarity=-0.026  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHH
Q psy15816         17 AMFTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANT   90 (171)
Q Consensus        17 ~~l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~   90 (171)
                      -.+..+..||.....+.....+.... ....+...-.+    +....|...+..+    +...|..| +..+..+++.+.
T Consensus        62 g~l~dr~g~k~~~~~~~~~~~~~~~~~~~~~~~~~l~~----~~~l~G~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  137 (381)
T PRK03633         62 GYVIKRIGFNRSYYLASLIFAAGCAGLGLMVGFWSWLA----WRFVAGIGCAMIWVVVESALMCSGTSRNRGRLLAAYMM  137 (381)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHH----HHHHHHHHHHHHHHHHHHHHHHhCCHHHHHHHHHHHHH
Confidence            35677788887777776666543221 11223222111    1222222222222    22334444 567999999999


Q ss_pred             HHhhhhhhhhhhhheeecC
Q psy15816         91 LSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~  109 (171)
                      ..+++..++|.+.+.+.+.
T Consensus       138 ~~~~g~~~g~~~~~~l~~~  156 (381)
T PRK03633        138 VYYLGTVLGQLLVSKVSTE  156 (381)
T ss_pred             HHHHHHHHHHHHHhccccc
Confidence            9999999999999988664

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=93.58  E-value=0.65  Score=40.98  Aligned_cols=76  Identities=14%  Similarity=0.086  Sum_probs=42.0

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhh----hhhhhhhe-eecC----C---CccccCChhHHHHHHHHHHHHHH
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGF----VSSHIVGV-LTDG----D---KVRHFRPWQYVFMVLTTTYTVGA  133 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gi----i~p~i~G~-iv~~----~---~~~~~~~w~~vF~i~a~i~~~g~  133 (171)
                      +..........| +..|...|+....++++..    +.|.+.+. +.+.    .   ..++...|+.++.+.+.+.++..
T Consensus       146 ~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~iv~~  225 (462)
T PRK15034        146 ASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLLAIAT  225 (462)
T ss_pred             HHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            344444445556 5579999998666666664    44544321 1110    0   00012348888887777777777


Q ss_pred             Hhhhheecc
Q psy15816        134 IVFLIFGTG  142 (171)
Q Consensus       134 i~~~~~~~~  142 (171)
                      +.+.++.++
T Consensus       226 i~~~~~~~~  234 (462)
T PRK15034        226 IAAWSGMND  234 (462)
T ss_pred             HHHHHhCCC
Confidence            666655443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=93.43  E-value=0.14  Score=49.22  Aligned_cols=59  Identities=8%  Similarity=0.055  Sum_probs=44.3

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHH
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYT  130 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~  130 (171)
                      ....+..++.+| ++.|.++|+.|+...+++.+++.+.|.+.+..     .++...|.+.+.+.+
T Consensus       353 ~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~-----~~~~~~~~~~~~~~~  412 (1140)
T PRK06814        353 VPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALG-----FSIPWIILFIALANL  412 (1140)
T ss_pred             HHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhc-----cCHHHHHHHHHHHHH
Confidence            345566677777 57899999999999999999999999887542     457777666555433

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=93.33  E-value=0.42  Score=42.75  Aligned_cols=68  Identities=7%  Similarity=0.087  Sum_probs=49.5

Q ss_pred             hhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816         62 NGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        62 ~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      ..+..+...+...++.| +......++.+...|++.+++|.+.|.++...      +-..+|.+.++.+++..+.
T Consensus       117 ~a~~~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~------G~~~~f~inalsfl~~i~~  185 (524)
T PF05977_consen  117 SAFFNPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFF------GAAAAFLINALSFLISILA  185 (524)
T ss_pred             HHHHHHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHH------HHHHHHHHHHHHHHHHHHH
Confidence            44444555566667667 46678889999999999999999999988753      3456788877766665443

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00769 AAA ADP/ATP carrier protein family

Probab=93.19  E-value=0.55  Score=41.56  Aligned_cols=84  Identities=8%  Similarity=0.139  Sum_probs=53.9

Q ss_pred             HHHHhhhhcch-hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCc--cccCChh----HHHHHHHHH
Q psy15816         57 LALTFNGAVTA-GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKV--RHFRPWQ----YVFMVLTTT  128 (171)
Q Consensus        57 la~~~~~~~~~-g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~--~~~~~w~----~vF~i~a~i  128 (171)
                      .+-....+..+ -+|.-..|+.. +++...+++....+|++.++++.++.++.+..+.  ...++|.    ..+.+.++.
T Consensus       137 ~~elw~~~vvS~lFW~fandi~t~~qakRfy~l~~~ganlg~i~sg~~~~~~~~~~~~~~~~~~~~~~~~~~l~~i~~~~  216 (472)
T TIGR00769       137 MAELWGSVVLSLLFWGFANQITTIDEAKRFYALFGLGANVALIFSGRTIKYFSKLRASLGPGVDGWHVSLKNLMVIVICS  216 (472)
T ss_pred             HHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhccccccChHHHHHHHHHHHHHHH
Confidence            33333344444 78999999765 7889999999999999999999998887632100  0124563    334444444


Q ss_pred             HHHHHHhhhhee
Q psy15816        129 YTVGAIVFLIFG  140 (171)
Q Consensus       129 ~~~g~i~~~~~~  140 (171)
                      .++...++..+.
T Consensus       217 ~~~~~~~~~~l~  228 (472)
T TIGR00769       217 GLAIILLYWWVN  228 (472)
T ss_pred             HHHHHHHHHHHH
Confidence            455555555543

These proteins are members of the ATP:ADP Antiporter (AAA) Family (TC 2.A.12), which consists of nucleotide transporters that have 12 GES predicted transmembrane regions. One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.17  E-value=1.1  Score=37.41  Aligned_cols=53  Identities=11%  Similarity=-0.046  Sum_probs=39.4

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+...++......++.++++...+++.++      -+|+..|++.+++.++..+....+
T Consensus       131 ~~~~~~~~~~g~~lG~~~g~~~~~~l~~~------~gw~~~f~~~a~l~~~~~~~~~~~  183 (390)
T TIGR02718       131 LAKGNAVQIAGVMIGFFGGGAGTLVLFGK------FGQRPAFLLVACVPLASLVCVLWL  183 (390)
T ss_pred             hhHHHHHHHHHHHHHHHHHHHHHHHHHHH------hCHHHHHHHHHHHHHHHHHHHHHc
Confidence            36667777777788888888878888775      469999999988877666554444

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PF00854 PTR2: POT family; InterPro: IPR000109 This entry represents the POT (proton-dependent oligopeptide transport) family, which all appear to be proton dependent transporters

Probab=93.11  E-value=0.7  Score=38.84  Aligned_cols=54  Identities=19%  Similarity=0.202  Sum_probs=45.4

Q ss_pred             hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         80 FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        80 ~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .....+.+.-..-|+|+++++...+++.++      .+|...|.+.++..+++.+.|+.-
T Consensus        69 ~~~~~F~~fY~~in~G~~~~~~~~~~i~~~------~~~~~~f~i~~~~~~~~~~~f~~~  122 (372)
T PF00854_consen   69 RRDSFFNWFYWGINIGSLFSPTLVPYIQQN------YGWFLGFGIPAIGMLLALIVFLSG  122 (372)
T ss_dssp             HHHHHHHHHHHHHHHHHHHHHHCCCHHHHC------S-HHHHHHHHHHHHHHHHHHHHCC
T ss_pred             hhhhhHHHHHHHHhhhhHhhcccchhhccc------cchhhhhhHHHHHHHHHHHHHHhC
Confidence            456677888889999999999999999875      579999999999999998877764

The transport of peptides into cells is a well-documented biological phenomenon which is accomplished by specific, energy-dependent transporters found in a number of organisms as diverse as bacteria and humans. The POT family of proteins is distinct from the ABC-type peptide transporters and was uncovered by sequence analyses of a number of recently discovered peptide transport proteins []. These proteins that seem to be mainly involved in the intake of small peptides with the concomitant uptake of a proton []. These integral membrane proteins are predicted to comprise twelve transmembrane regions.; GO: 0005215 transporter activity, 0006857 oligopeptide transport, 0016020 membrane; PDB: 4APS_A 2XUT_C.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=92.94  E-value=0.48  Score=41.22  Aligned_cols=82  Identities=17%  Similarity=0.192  Sum_probs=55.0

Q ss_pred             HHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccC--ChhHHHHHHHHHHHHHHHh
Q psy15816         59 LTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFR--PWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        59 ~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~--~w~~vF~i~a~i~~~g~i~  135 (171)
                      .++.|.+.+....+...--| +.-|+..|+.. .||++..+...+.-.++...     +  .|+.+..+....+++..+.
T Consensus       115 ~G~~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~-----g~~~w~~~~~i~~~~l~v~~v~  188 (417)
T COG2223         115 LGLAGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAF-----GFLAWRNVAGIYVVALAIAAVL  188 (417)
T ss_pred             HhcccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHH-----hhHHHHHHHHHHHHHHHHHHHH
Confidence            34444444444445444445 55799999988 88888776666555555442     3  4999999888888888888


Q ss_pred             hhheecccccC
Q psy15816        136 FLIFGTGQLQP  146 (171)
Q Consensus       136 ~~~~~~~e~q~  146 (171)
                      +.+..++.+|.
T Consensus       189 ~~~~~~d~p~~  199 (417)
T COG2223         189 AWLGMNDVPEH  199 (417)
T ss_pred             HHHHhCCChhh
Confidence            87776665554

>PRK09669 putative symporter YagG; Provisional

Probab=92.81  E-value=2.2  Score=36.54  Aligned_cols=69  Identities=22%  Similarity=0.116  Sum_probs=38.2

Q ss_pred             hhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCC-CccccCChhHHHHHHHHHHHHHHHh
Q psy15816         67 AGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD-KVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        67 ~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~-~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      ..+.+...++.+  +..+.+.+.....+++++.+.+.+...++... +.+...+|+..+.+.+++.++..++
T Consensus       128 ip~~al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~  199 (444)
T PRK09669        128 VPYCAMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFC  199 (444)
T ss_pred             chHHHhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHH
Confidence            344555555543  44566777777777777666655322222110 0002246888888877776665543

>TIGR00896 CynX cyanate transporter

Probab=92.81  E-value=0.28  Score=40.44  Aligned_cols=32  Identities=19%  Similarity=0.250  Sum_probs=28.8

Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhhheeecCC
Q psy15816         79 NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD  110 (171)
Q Consensus        79 ~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~  110 (171)
                      +..|...|+.+..+.+++.++|.+.|++.++.
T Consensus       318 ~~~g~~~~~~~~~~~~~~~~gp~~~G~l~~~~  349 (355)
T TIGR00896       318 AQAAALSAMAQSIGYLLAALGPLFVGVLHDIS  349 (355)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHh
Confidence            45789999999999999999999999998875

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=92.74  E-value=0.96  Score=37.93  Aligned_cols=59  Identities=7%  Similarity=-0.108  Sum_probs=41.1

Q ss_pred             hhhhhccccchHHHHHHHHHH-HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816         70 LGNGLDIAPNFSGTIFGLANT-LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~-~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      .....+..+++.+...++.+. ...++..++|.+.|++.|..      ++ .+|.+.+++.+++.+.
T Consensus       315 ~~~i~~~~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~------g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       315 MRYIAAQPGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTL------GA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHhCCHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cH-HHHHHHHHHHHHHHHH
Confidence            333345523556888888874 46688899999999998863      34 5677777777766543

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=92.70  E-value=2.7  Score=34.63  Aligned_cols=35  Identities=31%  Similarity=0.358  Sum_probs=23.0

Q ss_pred             hhhhhccccchHHHHHHHHHHHHh-hhhhhhhhhhh
Q psy15816         70 LGNGLDIAPNFSGTIFGLANTLSS-FGGFVSSHIVG  104 (171)
Q Consensus        70 ~~~~~diap~~ag~v~gi~n~~g~-l~gii~p~i~G  104 (171)
                      .....|..|+..|...++.+.... ++.++++++.+
T Consensus       309 ~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~g~~~~~  344 (377)
T PRK11102        309 MAVILDEFPHMAGTASSLAGTLRFGIGAIVGALLSL  344 (377)
T ss_pred             HHHHhccccccchHHHHHHHHHHHHHHHHHHHHHHh
Confidence            344456667788999999887654 55556665543

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=92.52  E-value=1.5  Score=37.02  Aligned_cols=55  Identities=11%  Similarity=0.024  Sum_probs=40.6

Q ss_pred             hccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         74 LDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        74 ~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      +...|+..+.+.++.....+++..++|.+.|++.+.      .+++..|...+.+.++.++
T Consensus       331 ~~~~~~~~~~~~~~~~~~~~lg~~~G~~l~G~l~~~------~g~~~~~~~~~~~~~~~~~  385 (394)
T PRK10213        331 TRSLADQAEKAGSIQVAVIQLANTCGAAIGGYALDN------IGLTSPLMLSGTLMLLTAL  385 (394)
T ss_pred             HHHCcccHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cChhhHHHHHHHHHHHHHH
Confidence            333466557777877788889999999999999876      3577788877766655544

>TIGR00806 rfc RFC reduced folate carrier

Probab=92.32  E-value=1.5  Score=39.24  Aligned_cols=57  Identities=16%  Similarity=0.169  Sum_probs=39.3

Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHH---HHHHHHHHHHHHHhhhheec
Q psy15816         78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYV---FMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~v---F~i~a~i~~~g~i~~~~~~~  141 (171)
                      |++.+.+.|+.+....++.++++.+.++++ .      .+|+.-   .++.-+..+++.++-+++-+
T Consensus       145 ~kER~ratsi~~sg~~vG~~Ia~~L~qll~-s------~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~  204 (511)
T TIGR00806       145 PSRYQRAAAYSRAAVLLGVFLSSVLGQLLV-T------LGWISYSTLNIISLVFMTFSVFLALFLKR  204 (511)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHHH-h------cCchhHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            366799999999999999999999988843 2      235544   44544455555554444443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=92.13  E-value=2.5  Score=34.66  Aligned_cols=39  Identities=23%  Similarity=0.259  Sum_probs=27.7

Q ss_pred             hhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhhee
Q psy15816         68 GYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVL  106 (171)
Q Consensus        68 g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~i  106 (171)
                      ..+....|..|+..|...++.|......+.+.+.+.|.+
T Consensus       320 ~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~i~~~~~~~~  358 (385)
T TIGR00710       320 IAMAYALEDFPHVAGTASALFGTLRLVLGAIVGYLVSLI  358 (385)
T ss_pred             HHHHHHhccCcccchHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            334445566677789999999999887666666667743

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=91.98  E-value=1.3  Score=37.07  Aligned_cols=53  Identities=13%  Similarity=-0.040  Sum_probs=34.6

Q ss_pred             ccccchHHHHHHHHHHHH-hhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         75 DIAPNFSGTIFGLANTLS-SFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        75 diap~~ag~v~gi~n~~g-~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      +..+++.+...++.+... .++..++|.+.|++.+..      ++ ..|...+++.+.+.+
T Consensus       320 ~~~~~~~~~~~~~~~~~~~~~g~~ig~~i~G~l~~~~------g~-~~~~~~~~~~~~~~~  373 (382)
T PRK11128        320 ARPGSEVIRLQALYSALAMGGSIAIMTVLSGFLYQHL------GA-GVFWVMALVALPALF  373 (382)
T ss_pred             HCCHhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhc------cH-HHHHHHHHHHHHHHH
Confidence            344544577888887554 445589999999998874      34 356666666555433

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=91.94  E-value=0.79  Score=39.46  Aligned_cols=58  Identities=16%  Similarity=0.233  Sum_probs=45.9

Q ss_pred             ccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         77 APNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        77 ap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .|+.++..+|+.+.+|-+-..++|.++|++-|.+     ++|+..+...+.+.+...++-+..
T Consensus       327 ~a~~Aa~LSgmaQg~GYllAa~GP~l~G~lhDa~-----gsw~~~~~~l~~~~i~m~i~Gl~a  384 (395)
T COG2807         327 DAAIAAALSGMAQGVGYLLAAFGPWLFGFLHDAT-----GSWSAPLVLLALATLLMLIFGLRA  384 (395)
T ss_pred             ChHHHHHHHHHhhhhhHHHHhhhhhhHhHHHHhc-----CChHHHHHHHHHHHHHHHHHHhhc
Confidence            3567899999999999999999999999998775     899999877666555544443333

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=91.90  E-value=0.94  Score=38.77  Aligned_cols=68  Identities=12%  Similarity=0.035  Sum_probs=38.1

Q ss_pred             HhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816         60 TFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT  128 (171)
Q Consensus        60 ~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i  128 (171)
                      .+.+...+..++...+.-+++.....+...+ +.++|.+.|.+.|++.|+..+...++.+..|.+....
T Consensus       333 lf~s~~fp~i~sl~~~~~g~~~~~~s~~l~~-~~~Gga~~p~l~G~~~d~~~~~~~~~~~~~~~~~~~~  400 (410)
T TIGR00885       333 AFMSLMFPTIYGIALKGLGQDTKYGAAGLVM-AIIGGGIVPPLQGFIIDMKEIAAAPAVNTSFILPLLC  400 (410)
T ss_pred             HHHHHHHHHHHHHHHhhhhhhhhhhHHHHHH-HHhccchHHHHHHHHHHHhcccccCccchHHHHHHHH
Confidence            3333333555666666546553332333222 3399999999999998853111123467777764433

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>COG2270 Permeases of the major facilitator superfamily [General function prediction only]

Probab=91.79  E-value=0.26  Score=43.02  Aligned_cols=68  Identities=18%  Similarity=0.304  Sum_probs=53.7

Q ss_pred             hhhhhhh----hcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         67 AGYLGNG----LDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        67 ~g~~~~~----~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ++.++..    ..+.| +..+.-+|+.+..+-.+.+.+|.+++.+++-+     ++-|..+.....++.+|.++.+..
T Consensus       356 G~~qA~SRSy~~~lvp~~k~~~fFglyaltgra~S~~gp~lv~v~t~iT-----g~~r~g~~~i~vll~iGl~~L~~v  428 (438)
T COG2270         356 GGAQASSRSYLARLVPKGKEGRFFGLYALTGRAASFLGPFLVAVITQIT-----GSSRAGVLSIIVLLLIGLLLLLRV  428 (438)
T ss_pred             chHHHHHHHHHHHhCCCccccceeehhhhhhhHHHHHHHHHHHHHHHHh-----cchhhHHHHHHHHHHhhHhhEEee
Confidence            4545443    34556 56799999999999999999999999999986     567888888888888888765544

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=91.55  E-value=1.2  Score=38.92  Aligned_cols=68  Identities=15%  Similarity=0.139  Sum_probs=51.2

Q ss_pred             chhhhhhhhccccc-hHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         66 TAGYLGNGLDIAPN-FSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        66 ~~g~~~~~~diap~-~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+..++-..+++|+ ..|..+|+......++..+++.+.+...+.      .+|...|...+.+.+++++++.++
T Consensus       399 ~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~------~~~~~~~~~~~~~~~~~~~~~~~~  467 (475)
T TIGR00924       399 SPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVP------QGVTGVFGKIGLVTLLVGVVMALM  467 (475)
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc------cchhhHHHHHHHHHHHHHHHHHHH
Confidence            35556666688884 589999999999999999998887755443      458888888887777776666554

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK10429 melibiose:sodium symporter; Provisional

Probab=91.54  E-value=1  Score=39.17  Aligned_cols=69  Identities=13%  Similarity=0.108  Sum_probs=38.8

Q ss_pred             chhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecC-CCccccCChhHHHHHHHHHHHHHHH
Q psy15816         66 TAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG-DKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        66 ~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~-~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ...+.+...|+++  +....+++.....+++++++.+.+...+++. ...+...+|+....+.+++.+++.+
T Consensus       124 ~ip~~al~~~lt~~~~eR~~l~~~~~~~~~ig~~~~~~~~~~~~~~~g~~~~~~g~~~~~~i~~~~~~~~~~  195 (473)
T PRK10429        124 DIPFWSLVPTLTLDKREREQLVPYPRFFASLAGFVTAGFTLPFVNYVGGGDRGFGFQMFTLVLIAFFIVSTI  195 (473)
T ss_pred             cchHHhhhHHhCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            3455666667764  4457778887777777776665553332211 0000123577777776666665544

>PRK10133 L-fucose transporter; Provisional

Probab=91.48  E-value=0.97  Score=39.05  Aligned_cols=69  Identities=12%  Similarity=0.098  Sum_probs=45.2

Q ss_pred             HHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHH
Q psy15816         54 MFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTT  128 (171)
Q Consensus        54 ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i  128 (171)
                      .+.+...+.+...+..++...+..|++++...++.+. ..+++.+.|.+.|.+.+..     ++-+..|.+....
T Consensus       353 ~~~l~glg~~~i~P~~~s~a~~~~~~~~~~as~l~~~-~~~g~~~~~~i~G~l~~~~-----g~~~~~~~v~~~~  421 (438)
T PRK10133        353 ALTLCSAFMSIQYPTIFSLGIKNLGQDTKYGSSFIVM-TIIGGGIVTPVMGFVSDAA-----GNIPTAELIPALC  421 (438)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHcccchhhccchhHHhH-HhccchHHHHHHHHHHHhc-----cchHHHHHHHHHH
Confidence            3333444455556777777777667777888888874 5578889999999887753     2345566654333

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=91.13  E-value=3  Score=36.92  Aligned_cols=100  Identities=18%  Similarity=0.190  Sum_probs=65.6

Q ss_pred             cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chH--------------------------HHHHHHHHHHHhhhhhh
Q psy15816         46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFS--------------------------GTIFGLANTLSSFGGFV   98 (171)
Q Consensus        46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~a--------------------------g~v~gi~n~~g~l~gii   98 (171)
                      .+...+.++..++....+....-+.+...|+++ +..                          +.++|.....|.+++++
T Consensus       124 ~~~~~~~~l~iia~v~~~~~~vfyna~LP~la~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~vS~~G~a~Gy~G~~v  203 (477)
T PF11700_consen  124 GQWWLALVLFIIANVGYEASNVFYNAYLPDLARPEPRVRAAREPSANGNISDSEYEAVDSLTRGRVSGLGWALGYIGGLV  203 (477)
T ss_pred             chHHHHHHHHHHHHHHHHHHHHHHHHHhHhhcCCChhhhhhhhhhccCCCChhhhhhHHHhhhchhHHHHHHHHHHHHHH
Confidence            344667777777776666665555666667776 345                          89999999999999999


Q ss_pred             hhhh-hheeecCCCc-cccCChhHHHHHHHHHHHHHHHhhhheeccccc
Q psy15816         99 SSHI-VGVLTDGDKV-RHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQ  145 (171)
Q Consensus        99 ~p~i-~G~iv~~~~~-~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q  145 (171)
                      .-.+ ...+...... ++....|.++.+.++-.++..+-+.++.++.+.
T Consensus       204 ~l~i~l~~~~~~~~~~~~~~~~r~~~~~~a~ww~vfsiP~~~~~~~~~~  252 (477)
T PF11700_consen  204 ALLISLLLVISPGSTASNTWAIRVAFLIVALWWLVFSIPLFLWLPDRPG  252 (477)
T ss_pred             HHHHHHHHHHcCCCccccchhhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            8777 3333322210 012346888888888877666665555444433

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>KOG0255|consensus

Probab=90.90  E-value=5.8  Score=34.74  Aligned_cols=86  Identities=12%  Similarity=0.099  Sum_probs=52.0

Q ss_pred             HHHHHHHHHHHhhHHHHhhhh--ccCCcchH--HHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhh
Q psy15816         21 LALTFNGAVTAGYLGNGLDIA--PNFSEDPI--FAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFG   95 (171)
Q Consensus        21 l~~ark~~~~~G~~~~~l~l~--~~~~~~~~--~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~   95 (171)
                      ....||.....+.+..++.++  ........  .....-.++.++.+......+....++-| .......+..+..+.++
T Consensus       375 ~~~gR~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~  454 (521)
T KOG0255|consen  375 PEFGRRPPLFLSLFLAGIGLLLFGWLPDDLGGWLHWILPLLGKFFIGSAFNLIFLYSAELIPTVVRNTAVGAISAAARLG  454 (521)
T ss_pred             HHhCcHHHHHHHHHHHHHHHHHHHHhhccchhHHHHHHHHHHHHHHHHHHHHHHHHHHhhccHHHHHHHHHHHHHHHHHH
Confidence            334589988888777765432  22211111  33333334444444333333444455667 45788999999999999


Q ss_pred             hhhhhhhhhee
Q psy15816         96 GFVSSHIVGVL  106 (171)
Q Consensus        96 gii~p~i~G~i  106 (171)
                      ++++|.+.-..
T Consensus       455 ~i~ap~~~~~~  465 (521)
T KOG0255|consen  455 SILAPLFPLLL  465 (521)
T ss_pred             HHHHHHHHHHH
Confidence            99999986544

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=90.12  E-value=3.3  Score=34.50  Aligned_cols=26  Identities=8%  Similarity=-0.045  Sum_probs=14.5

Q ss_pred             chHHHHHHHHHHHHhhhhhhhhhhhh
Q psy15816         79 NFSGTIFGLANTLSSFGGFVSSHIVG  104 (171)
Q Consensus        79 ~~ag~v~gi~n~~g~l~gii~p~i~G  104 (171)
                      +..|...++......+++.+.+.+.+
T Consensus       323 ~~~g~~~~~~~~~~~~g~~~~~~l~~  348 (392)
T PRK10473        323 LRAGVASSTLGIAQVCGSSLWIWLAA  348 (392)
T ss_pred             ccccHHHHHHHHHHHHHHHHHHHHHH
Confidence            44566666665555555555555544

>COG3104 PTR2 Dipeptide/tripeptide permease [Amino acid transport and metabolism]

Probab=89.62  E-value=0.24  Score=43.94  Aligned_cols=54  Identities=20%  Similarity=0.330  Sum_probs=43.8

Q ss_pred             HHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         82 GTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        82 g~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      ---+++.=...|++++++|++++++.++      .+|...|.++++-+..|.+.|.+..+
T Consensus       154 D~gFt~fY~~iNiGsl~~p~i~~~~~~~------~g~~~gF~~aavGm~~gl~~f~~~~r  207 (498)
T COG3104         154 DGGFTLFYMGINIGSLIAPIITGLLAIN------YGWHVGFGLAAVGMIIGLVIFLLGRR  207 (498)
T ss_pred             CCCccEEEEEeehHHHHHHHHHHHHHHh------hCHHHHHHHHHHHHHHHHHHHHHccc
Confidence            3345555667789999999999999886      57999999999999999888877643

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=89.61  E-value=1.6  Score=35.18  Aligned_cols=40  Identities=30%  Similarity=0.511  Sum_probs=32.7

Q ss_pred             hhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhh
Q psy15816         61 FNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSS  100 (171)
Q Consensus        61 ~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p  100 (171)
                      ..+...+.......+..| ++.|.+.|+.++..+++++++|
T Consensus       312 ~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~igP  352 (352)
T PF07690_consen  312 GFGIVFPILFSLIQELVPPEYRGTAFGLFNSIGSLGGIIGP  352 (352)
T ss_dssp             HHHHHCHHHHHHHHCCCHTCHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHCC
Confidence            445555666777778777 7889999999999999999987

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=89.57  E-value=1.7  Score=37.71  Aligned_cols=56  Identities=27%  Similarity=0.295  Sum_probs=40.3

Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      |+..|-..+.....-.++++++..+.|.+.+.      .+++..|.+.+.+..+..+..+++
T Consensus       119 p~~~g~lqS~~~~~~~~G~lv~~~l~G~l~~~------~~~~~~f~i~~~~~~l~~~~~~~~  174 (433)
T PF03092_consen  119 PESRGDLQSFVWGVRSVGSLVGSLLSGPLLDS------FGPQGVFLISAALPLLMLIVALFL  174 (433)
T ss_pred             CchhHHHHHHHHHHHHHHHHHHHHhhhhhhhc------CCCeEEehHHHHHHHHHHHHHHHh
Confidence            43367777778888888999999999998776      357778888777766555444443

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=89.56  E-value=3.6  Score=36.30  Aligned_cols=70  Identities=14%  Similarity=0.146  Sum_probs=47.2

Q ss_pred             hhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCC----CccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         70 LGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGD----KVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        70 ~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~----~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+...+.+| +..|.++|+.+...++++.++..+.++.....    +..+...+...|...+++.+++++++.+.
T Consensus       401 ~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~~~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~v~~~~~  475 (489)
T PRK10207        401 LAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVATFTAVPDNITDPLETLPVYTNVFGKIGLVTLGVAVVMALM  475 (489)
T ss_pred             HHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccchhhhhhHHHHHHHHHHHHHHHHHHHHHH
Confidence            455556778 67899999999999999888877765442111    00011236778888888877777766654

>PF01306 LacY_symp: LacY proton/sugar symporter; InterPro: IPR022814 In bacteria there are a number of families of transport proteins, including symporters and antiporters, that mediate the intake of a variety of sugars with the concomitant uptake of hydrogen ions (proton symporters) []

Probab=88.81  E-value=2.5  Score=36.81  Aligned_cols=62  Identities=15%  Similarity=0.211  Sum_probs=43.5

Q ss_pred             cchHHHHHHHH-HHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh-eeccccc
Q psy15816         78 PNFSGTIFGLA-NTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI-FGTGQLQ  145 (171)
Q Consensus        78 p~~ag~v~gi~-n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~-~~~~e~q  145 (171)
                      ++..+++..+. ++...++.++.+.+.|++-|+      -+++..|++.+.+.+...++-.+ +.++++|
T Consensus       343 ~rlsAt~y~v~~~~~~~~~~~i~s~~~G~lyd~------~G~~~tylimg~iv~~~~li~~f~l~~~~~~  406 (412)
T PF01306_consen  343 KRLSATLYLVGFQFAKQIGIIILSPLAGYLYDR------IGFQHTYLIMGLIVLPFTLISAFTLKKDKKQ  406 (412)
T ss_dssp             GGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHH------HHHHHHHHHHHHHHHHHHHHHHHHS--SSST
T ss_pred             HhHHHHHHHHHHHHHHHHHHHHHhhhHHhhHhh------cCcHHHHHHHHHHHHHHHHHheeeecCCCcc
Confidence            36677888884 788889999999999999876      36888898888776655554443 4444433

The lacY family of Escherichia coli and Klebsiella pneumoniae are proton/beta-galactoside symporters, which, like most sugar transporters, are integral membrane proteins with 12 predicted transmembrane (TM) regions. Also similar to the lacY family are the rafinose (rafB) and sucrose (cscB) permeases from E. coli []. This entry also includes bacterial phenylproprionate permease.; PDB: 1PV7_B 1PV6_A 2Y5Y_B 2CFQ_A 2V8N_B 2CFP_A.

>KOG0254|consensus

Probab=88.59  E-value=5.3  Score=35.15  Aligned_cols=109  Identities=12%  Similarity=0.062  Sum_probs=60.7

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhh----hhhhcccc-chHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYL----GNGLDIAP-NFSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~----~~~~diap-~~ag~v~gi~n~~   91 (171)
                      .++-...||.....+.+...+. +......    .+..+.++=.+.|+..++..    ....|++| +++|...++.+..
T Consensus       111 ~l~d~~GRk~~l~~~~~~~~iG~ii~~~a~----~~~~l~~GR~l~G~g~G~~~~~~piy~sEiap~~~RG~l~~~~~l~  186 (513)
T KOG0254|consen  111 RLGDRIGRKKTLLLAVVLFLIGAIIIALAP----SWYQLIVGRILTGLGVGGASVLAPVYISEIAPAHIRGTLVSLYQLF  186 (513)
T ss_pred             HHHHHhhhHHHHHHHHHHHHHHHHHHHHhh----hHHHHHHHHHHhccchhhhhhcchhhHhhcCChhhhHHHHHHHHHH
Confidence            4667778887666555444332 1111111    22333333334444333222    22347888 4789999988888


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHh
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIV  135 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~  135 (171)
                      .+++-+++ .+.|+..++.   . .+||..+.+..+-.++-.+.
T Consensus       187 ~~~Gi~~~-~~~~~~~~~~---~-~~Wr~~~~~~~i~~~~~~~~  225 (513)
T KOG0254|consen  187 ITIGILLG-YCINYGTSKV---Y-AGWRIPLGLALIPAVILALG  225 (513)
T ss_pred             HHHHHHHH-HHHhhhhccC---C-ccHHHHHHHHHHHHHHHHHH
Confidence            88555555 6777776653   1 47998877655544444433

>PF03219 TLC: TLC ATP/ADP transporter; InterPro: IPR004667 These proteins are members of the ATP:ADP Antiporter (AAA) family, which consists of nucleotide transporters that have 12 GES predicted transmembrane regions

Probab=88.42  E-value=1.2  Score=39.76  Aligned_cols=71  Identities=13%  Similarity=0.250  Sum_probs=47.3

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeec-CCC--ccccCChhHHHHH-HHHHHHHHHHhhhh
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTD-GDK--VRHFRPWQYVFMV-LTTTYTVGAIVFLI  138 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~-~~~--~~~~~~w~~vF~i-~a~i~~~g~i~~~~  138 (171)
                      -+|.-..|+.. +++....++.+..+|++++++..++.++.+ ..+  ....++|...+.. .+.+.+.|.++...
T Consensus       164 LFW~fAN~itt~~eAKRfYpl~g~ganigli~sG~~~~~~~~~~~~~~~~~~~~~~~~l~~l~~~v~~~g~~i~~~  239 (491)
T PF03219_consen  164 LFWGFANEITTVEEAKRFYPLFGLGANIGLIFSGQLTSYFSSFLRKSLPAGVDAWELSLNSLMGIVLILGIVIILL  239 (491)
T ss_pred             HHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhcccccccHhHHHHHHHHHHHHHHHHHHHH
Confidence            46888888765 788999999999999999999998887776 100  0012468766643 33444444444443

One protein from Rickettsia prowazekii functions to take up ATP from the eukaryotic cell cytoplasm into the bacterium in exchange for ADP. Five AAA family paralogues are encoded within the genome of R. prowazekii. This organism transports UMP and GMP but not CMP, and it seems likely that one or more of the AAA family paralogues are responsible. The genome of Chlamydia trachomatis encodes two AAA family members, Npt1 and Npt2, which catalyse ATP/ADP exchange and GTP, CTP, ATP and UTP uptake probably employing a proton symport mechanism. Two homologous adenylate translocators of Arabidopsis thaliana are postulated to be localized to the intracellular plastid membrane where they function as ATP importers.; GO: 0005471 ATP:ADP antiporter activity, 0005524 ATP binding, 0006810 transport, 0016021 integral to membrane

>TIGR00788 fbt folate/biopterin transporter

Probab=88.21  E-value=1.1  Score=39.09  Aligned_cols=42  Identities=24%  Similarity=0.299  Sum_probs=31.6

Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .+++.++++.+.|.+.+.      .+|+.+|.+.+++.++..+.+.++
T Consensus       167 ~~~G~~vg~~l~G~l~~~------~~~~~~f~~~a~l~ll~~~~~~~~  208 (468)
T TIGR00788       167 SATGGLISSLLGGPLLDK------TLTRILFLITAALLLLQLFVSNLS  208 (468)
T ss_pred             HHHHHHHHHHHHHHHHHh------cCcchHHHHHHHHHHHHHHHHHhc
Confidence            457888899999988765      469999999888887774444444

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PF01770 Folate_carrier: Reduced folate carrier; InterPro: IPR002666 The reduced folate carrier (a transmembrane glycoprotein) transports reduced folate into mammalian cells via the carrier mediated mechanism (as opposed to the receptor mediated mechanism) it also transports cytotoxic folate analogues used in chemotherapy [], such as methotrexate (MTX)

Probab=88.04  E-value=10  Score=33.16  Aligned_cols=126  Identities=11%  Similarity=0.146  Sum_probs=60.6

Q ss_pred             HHHHHHHHHHHHHHHHHHhhHHHHhh-hhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhc-cccchHHHHHHHHHHH
Q psy15816         14 FAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLD-IAPNFSGTIFGLANTL   91 (171)
Q Consensus        14 ~~~~~l~l~~ark~~~~~G~~~~~l~-l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~d-iap~~ag~v~gi~n~~   91 (171)
                      +.+++++....-|-++..+.++.... ++..++.+ ..++-++=+..+.....-..+++..-. +.|++-..+.+.+...
T Consensus        59 ~~vflltd~l~Ykpviil~~~~~i~t~~lll~~~s-v~~mq~~q~~yg~~~a~evay~sYiys~v~~~~yq~vts~~raa  137 (412)
T PF01770_consen   59 LPVFLLTDYLRYKPVIILQALSYIITWLLLLFGTS-VLAMQLMQFFYGLATAAEVAYYSYIYSVVDKEHYQKVTSYTRAA  137 (412)
T ss_pred             HHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHCc-HHHHHHHHHHHHHHHHHHHHHHHHheeecCHHHHHHHHHHHHHH
Confidence            44557777777787777665554322 11112222 222222222222222222233332222 2244336666666666


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccc
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQL  144 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~  144 (171)
                      .-+|-+++..+.-.++...    ..+++..+++..+...++.+.-+++-+.++
T Consensus       138 ~l~g~~~s~~lgQllvs~~----~~sy~~L~~isl~~~~~a~~~~~fLP~~~~  186 (412)
T PF01770_consen  138 TLVGRFISSLLGQLLVSFG----GVSYFQLNYISLASVSLALLIALFLPMPKR  186 (412)
T ss_pred             HHHHHHHHHHHHHHHHHhc----CCCHHHHHHHHHHHHHHHHHHHHHcCCCCc
Confidence            5555555544433333332    257888888877666666665555544433

Mammalian cells have an absolute requirement for exogenous folates which are needed for growth, and biosynthesis of macromolecules [].; GO: 0005542 folic acid binding, 0008518 reduced folate carrier activity, 0006810 transport, 0016020 membrane

>KOG2816|consensus

Probab=88.03  E-value=1.6  Score=38.53  Aligned_cols=113  Identities=12%  Similarity=0.094  Sum_probs=69.5

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhhccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhh
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIAPNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~g   96 (171)
                      -++.+.+||...........+-.... ....++..++..+..++ +...++..+...|+.. +....-.|+.+..-..++
T Consensus        84 ~lSD~~grk~~L~~~~~~~~l~~~~~-~~~~~~~~~~~~l~g~~-~~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~  161 (463)
T KOG2816|consen   84 ALSDRYGRKVVLLLPLFGTILPALCL-LFQGYWFFLLLGLSGGF-SAIFSVGFAYVADISSEEERSSSIGLLSGTFGAGL  161 (463)
T ss_pred             HhhhhhhhhhhHHHHHHHHHHhHHHH-HHHHHHHhhhcccccch-hhhhhhhhhheeeccchhHHHHHHHHHHHHHHHHH
Confidence            46677888887766554443211000 01112222222222222 1222344555667665 667888999999999999


Q ss_pred             hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         97 FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        97 ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      .++|.+.+++.+.      .++..+|.++++..+...+ |.++
T Consensus       162 ~~~p~~~~~~~~~------~~~a~~f~ia~~~~~~~~~-y~~~  197 (463)
T KOG2816|consen  162 VIGPALGGYLVKF------LGIALVFLIAAASGILSLL-YMLL  197 (463)
T ss_pred             hHHHHHHHHHHHh------cCchHHHHHHHHHHHHHHH-HHhh
Confidence            9999999998876      5688899998887777665 5444

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=86.94  E-value=1.4  Score=35.99  Aligned_cols=49  Identities=20%  Similarity=0.350  Sum_probs=35.1

Q ss_pred             hHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhh
Q psy15816         48 PIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGG   96 (171)
Q Consensus        48 ~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~g   96 (171)
                      .......+.+...+.+...+..+....++.|++.|.+.|+.+..++++|
T Consensus       318 ~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~  366 (366)
T TIGR00886       318 LAVFIVLFVALFFFSGAGNGSTFALVPHIFRRATGAVSGLVGAIGNLGG  366 (366)
T ss_pred             HHHHHHHHHHHHHHhccccchhhhcchhhchhhcccHHHHHHHhccCCC
Confidence            3333344444455556666677777788889889999999999998864

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=86.51  E-value=2.7  Score=35.86  Aligned_cols=37  Identities=16%  Similarity=0.228  Sum_probs=30.9

Q ss_pred             hhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         73 GLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        73 ~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      ..+..| ++.|...|+.|+..++++.+++.+.|.+.++
T Consensus       373 ~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g~~~~~  410 (485)
T TIGR00711       373 ALSGLPPHKIARGSSLSNFTRQLGGSIGTALITTILTN  410 (485)
T ss_pred             HHhcCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            334345 7789999999999999999999999988764

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PRK11462 putative transporter; Provisional

Probab=85.82  E-value=10  Score=32.95  Aligned_cols=70  Identities=17%  Similarity=0.041  Sum_probs=42.2

Q ss_pred             cchhhhhhhhcccc--chHHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHH
Q psy15816         65 VTAGYLGNGLDIAP--NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        65 ~~~g~~~~~~diap--~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ....+++...++++  +....++++....+++++++.+.+...+++... ++...+|+....+.+++.+++.+
T Consensus       126 ~~ipy~al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~  198 (460)
T PRK11462        126 VNIPYCALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLA  198 (460)
T ss_pred             HhccHHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHH
Confidence            33466666666665  457888998888888888777666433332110 00123577777766666655554

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=85.62  E-value=6.3  Score=34.08  Aligned_cols=57  Identities=16%  Similarity=0.218  Sum_probs=48.5

Q ss_pred             cchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         78 PNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        78 p~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      |++++.++|+..+.-++++.+++.++--+.++.     ++|+..+..=+...++..++|+--
T Consensus       129 pk~~~~mtglYs~sl~~~aaLaa~lavpla~~~-----~gW~~aL~~WAl~allAl~~WlPq  185 (395)
T COG2807         129 PKRVGLMTGLYSTSLGAGAALAAALAVPLAQHS-----GGWRGALGFWALLALLALLIWLPQ  185 (395)
T ss_pred             ccchhhHHhHHHHHHHHHHHHHhhhhhHHHHhh-----ccHHHHHHHHHHHHHHHHHHHhhh
Confidence            888999999999999999999888877776664     679999988888888888887754

>PF06813 Nodulin-like: Nodulin-like; InterPro: IPR010658 This entry represents a conserved region within plant nodulin-like proteins and a number of uncharacterised proteins

Probab=85.22  E-value=9.5  Score=30.91  Aligned_cols=42  Identities=14%  Similarity=0.249  Sum_probs=29.6

Q ss_pred             hhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecC
Q psy15816         67 AGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDG  109 (171)
Q Consensus        67 ~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~  109 (171)
                      +...++.... |++.|.+.|+.-....+++.+...+-..+-++
T Consensus       116 a~lvt~~~NF-P~~RG~vvgilk~~~GLSaai~t~i~~~~f~~  157 (250)
T PF06813_consen  116 ASLVTCVRNF-PRSRGTVVGILKGFFGLSAAIFTQIYSAFFGD  157 (250)
T ss_pred             HHHHHHHHhC-ccccCceehhhhHHHHhHHHHHHHHHHHHcCC
Confidence            3334444444 88889999999999999998887774444333

>PRK09848 glucuronide transporter; Provisional

Probab=85.10  E-value=2.1  Score=36.63  Aligned_cols=42  Identities=12%  Similarity=0.136  Sum_probs=31.0

Q ss_pred             hhhhhhhhcccc--------chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816         67 AGYLGNGLDIAP--------NFSGTIFGLANTLSSFGGFVSSHIVGVLTD  108 (171)
Q Consensus        67 ~g~~~~~~diap--------~~ag~v~gi~n~~g~l~gii~p~i~G~iv~  108 (171)
                      +..++...|..|        +..|..+|+.++...++..+++.+.|.+.+
T Consensus       338 ~~~~al~~~~~~~~~~~~g~r~~G~~~~~~~~~~klg~aig~~i~g~~l~  387 (448)
T PRK09848        338 TVMWALEADTVEYGEYLTGVRIEGLTYSLFSFTRKCGQAIGGSIPAFILG  387 (448)
T ss_pred             HHHHHHHHHhhhhhHHhhCccchhHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            344555556554        235999999999999999999888777653

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=84.91  E-value=0.025  Score=48.30  Aligned_cols=112  Identities=13%  Similarity=0.040  Sum_probs=59.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhh----hhhhhcccc-chHHHHHHHHHHHH
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGY----LGNGLDIAP-NFSGTIFGLANTLS   92 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~----~~~~~diap-~~ag~v~gi~n~~g   92 (171)
                      ++.+.+||.....+.+...+.. +.....+. .....+.++-.+.|+..++.    .....+.+| ++.|....+.+...
T Consensus        69 ~~d~~GRk~~~~~~~~~~~i~~~~~~~~~~~-~~~~~~~~~R~~~G~~~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~  147 (451)
T PF00083_consen   69 LADRYGRKPALIISALLMIIGSILIAFAPSY-NNFWMLLIGRFLIGFGIGGAYVVSPIYISEIAPPKHRGFLSSLFQLFW  147 (451)
T ss_pred             ccccccccccccccccccccccccccccccc-cccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            4567778876655554443321 11111100 11222223333444433332    334446776 67788888888888


Q ss_pred             hhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         93 SFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        93 ~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      .++.+++..+.-.+-+..   ....||..+.+.+...++..+
T Consensus       148 ~~G~~~~~~~~~~~~~~~---~~~~Wr~~~~~~~~~~l~~~~  186 (451)
T PF00083_consen  148 ALGILLASLIGYIVSYYS---DNWGWRILLIFGAIPSLLVLL  186 (451)
T ss_pred             cccccccccccccccccc---ccccccccccccccccccccc
Confidence            777777766532221211   124699998887766654443

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00926 2A1704 Peptide:H+ symporter (also transports b-lactam antibiotics, the antitumor agent, bestatin, and various protease inhibitors)

Probab=84.71  E-value=16  Score=33.70  Aligned_cols=60  Identities=17%  Similarity=0.170  Sum_probs=45.6

Q ss_pred             HHHHHHHHHHHHhhhhhhhhhhhheeecCCC-ccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         81 SGTIFGLANTLSSFGGFVSSHIVGVLTDGDK-VRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        81 ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~-~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .-..+.+.-...|+++++++++++++.++-. .+...+|..+|.+.+++++++.++|....
T Consensus       122 ~~s~F~~fY~~iNiGSlis~~i~~~l~~~~~~fg~~~~~~~aF~i~~i~m~ia~lvf~~g~  182 (654)
T TIGR00926       122 RSRFFSFFYFAINAGSLISTIITPILRGDVGCFGCQDCYPLAFGVPAILMILALIVFMAGS  182 (654)
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcccccCcchHHHHHHHHHHHHHHHHHHHHhc
Confidence            4567888888899999999999998874310 00113699999999999999988887643

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=82.68  E-value=6.2  Score=36.12  Aligned_cols=57  Identities=26%  Similarity=0.269  Sum_probs=33.7

Q ss_pred             cchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhh
Q psy15816         46 EDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHI  102 (171)
Q Consensus        46 ~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i  102 (171)
                      .+...+..+..++....+..........+-..| ++.|+++|++.++-.++|.++..+
T Consensus       403 ~n~~~~i~~~~l~g~giG~~~~~~~~~~ql~~p~~~ig~a~gL~~s~R~~GGsIg~aI  460 (599)
T PF06609_consen  403 DNKNAAIAFLVLAGFGIGGILVPAIVIAQLIVPDEDIGTATGLTGSIRSIGGSIGYAI  460 (599)
T ss_pred             CCcchHHHHHHHHHHhHHHHHHHHHHeeEeeeCchHHHHHHHHHHHHHHHhhHHHHHH
Confidence            343444455555544444433332333334445 678999999998888888776655

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK09669 putative symporter YagG; Provisional

Probab=82.29  E-value=8.3  Score=32.97  Aligned_cols=42  Identities=14%  Similarity=0.139  Sum_probs=31.3

Q ss_pred             hhhhhhhhcccc--------chHHHHHHHHHHHHhhhhhhhhhhhheeec
Q psy15816         67 AGYLGNGLDIAP--------NFSGTIFGLANTLSSFGGFVSSHIVGVLTD  108 (171)
Q Consensus        67 ~g~~~~~~diap--------~~ag~v~gi~n~~g~l~gii~p~i~G~iv~  108 (171)
                      +..++...|+.+        +..|..+|+.++...++..++|.+.|.+.+
T Consensus       338 ~~~~am~ad~~d~~e~~~G~r~~g~~~s~~~~~~klg~alg~~i~g~ll~  387 (444)
T PRK09669        338 PLQWSMFSDVVDYEEKRSGRRLDGLVFSTNLFAIKLGLAIGGAVVGWILA  387 (444)
T ss_pred             HHHHHHHHhhhhhhhhhcCcCcchHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            444555556542        335889999999999999999998888765

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=81.33  E-value=12  Score=32.58  Aligned_cols=81  Identities=15%  Similarity=0.156  Sum_probs=49.9

Q ss_pred             hhcchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecC----CCccccCChhHHHHHHHHHHHHHHHhhh
Q psy15816         63 GAVTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDG----DKVRHFRPWQYVFMVLTTTYTVGAIVFL  137 (171)
Q Consensus        63 ~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~----~~~~~~~~w~~vF~i~a~i~~~g~i~~~  137 (171)
                      |....+..+..+|+++ +.+|+..|.-...-.++--++..+.|.+.|-    ...+....|..||.+.+.+++++..+-.
T Consensus       316 G~f~vgals~mM~lt~~~~aG~~mG~WGaaQA~A~Glg~~~GG~~~D~~~~~~~~~~~~aY~~VF~lEa~ll~~a~~ll~  395 (403)
T PF03209_consen  316 GLFTVGALSLMMDLTSAGRAGLFMGAWGAAQAIARGLGTFLGGALRDLVRALFGNSPALAYGVVFALEAVLLLAALVLLG  395 (403)
T ss_pred             hHHHHHHHHHHHhCCCCcchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCcchHHHHHHHHHHHHHHHHHHHHH
Confidence            3444666788889875 6788877776665555555544444443321    0000235799999999988888776655


Q ss_pred             heeccc
Q psy15816        138 IFGTGQ  143 (171)
Q Consensus       138 ~~~~~e  143 (171)
                      -+.+.|
T Consensus       396 ~l~~~~  401 (403)
T PF03209_consen  396 RLDRRE  401 (403)
T ss_pred             Hhhhhc
Confidence            444443

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=80.74  E-value=4.7  Score=35.24  Aligned_cols=90  Identities=14%  Similarity=0.055  Sum_probs=49.5

Q ss_pred             HHHHHHHHHHHHHhhHHHHhh--hhccC--CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHHh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLD--IAPNF--SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLSS   93 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~--l~~~~--~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g~   93 (171)
                      +..+..||.....|.....+.  +....  ..+.........+.-...+..........++..| +..|...++.|+..+
T Consensus       318 l~~r~g~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~l~G~g~g~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~  397 (495)
T PRK14995        318 LVSRLGLRLVATGGMALSALSFYGLAMTDFSTQQWQAWGLMALLGFSAASALLASTSAIMAAAPPEKAAAAGAIETMAYE  397 (495)
T ss_pred             HHHHcCchHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHhHHHHHHHHHHHHHhcCCHHhcchHHHHHHHHHH
Confidence            344555566666666555432  22221  1222222222222121223332333444445455 568999999999999


Q ss_pred             hhhhhhhhhhheeec
Q psy15816         94 FGGFVSSHIVGVLTD  108 (171)
Q Consensus        94 l~gii~p~i~G~iv~  108 (171)
                      +++.+++.+.|.+.+
T Consensus       398 lG~~~G~ai~g~i~~  412 (495)
T PRK14995        398 LGAGLGIAIFGLLLS  412 (495)
T ss_pred             HHHHHHHHHHHHHHH
Confidence            999999998887764

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	171
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	98.25
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.24
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.12
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	97.88
2cfq_A	417	Lactose permease; transport, transport mechanism,	97.68
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.43
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	97.37
2xut_A	524	Proton/peptide symporter family protein; transport	97.28
2xut_A	524	Proton/peptide symporter family protein; transport	97.15
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.09
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	96.97
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	94.28
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	94.2

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=98.25  E-value=5.3e-06  Score=69.70  Aligned_cols=117  Identities=14%  Similarity=0.071  Sum_probs=76.3

Q ss_pred             HHHHH-HHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-ch--HHHHHHHHHHH
Q psy15816         18 MFTLA-LTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NF--SGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~-~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~--ag~v~gi~n~~   91 (171)
                      .++.+ ..||.....|.....+..  .++ ..+...-.....+.-...+...+...+...|..| +.  .+..+++.+..
T Consensus        76 ~l~dr~~g~r~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~  154 (491)
T 4aps_A           76 FVADRIIGARPAVFWGGVLIMLGHIVLAL-PFGASALFGSIILIIIGTGFLKPNVSTLVGTLYDEHDRRRDAGFSIFVFG  154 (491)
T ss_dssp             HHHHHTSCHHHHHHHHHHHHHHHHHHHHS-CCSTTHHHHHHHHHHHHHHHHHHHHHHHHHHHSSSCTTHHHHHHHHHHHH
T ss_pred             HHHhccccchHHHHHHHHHHHHHHHHHHH-hhhHHHHHHHHHHHHHHHHhccchHHHHHHHHcCcccccceeeehHHHHH
Confidence            45667 678888877776665432  222 2333322222222222223333444555567665 44  68899999999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheec
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGT  141 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~  141 (171)
                      .+++.+++|.+.|++.+.      .+|+..|++.+.+.+++.+.+.+..+
T Consensus       155 ~~~g~~~~~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~~~~  198 (491)
T 4aps_A          155 INLGAFIAPLIVGAAQEA------AGYHVAFSLAAIGMFIGLLVYYFGGK  198 (491)
T ss_dssp             HHHHHHHHHHHHHHHHHH------SCHHHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHhh------hhHHHHHHHHHHHHHHHHHHHHHhCc
Confidence            999999999999998775      46999999988888777776665543

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.24  E-value=1.2e-05  Score=66.10  Aligned_cols=125  Identities=14%  Similarity=0.120  Sum_probs=79.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh-c---cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA-P---NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTLS   92 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~-~---~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~g   92 (171)
                      .++.+..||.....+.....+... .   ....+.+.-.....+.-...+...+...+...|..| ++.+...++.+...
T Consensus        83 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~  162 (438)
T 3o7q_A           83 ILMKKLSYKAGIITGLFLYALGAALFWPAAEIMNYTLFLVGLFIIAAGLGCLETAANPFVTVLGPESSGHFRLNLAQTFN  162 (438)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSTTHHHHHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHhccccccHHHHHHHHHHHHhhHHHhhhhHHHHHHHHcCchhHHHHHHHHHHHH
Confidence            466677788887777766654321 1   122343332222222222233333444555567777 67799999999999


Q ss_pred             hhhhhhhhhhhheee-cCCCccccCC------------------------hhHHHHHHHHHHHHHHHhhhheecccccCC
Q psy15816         93 SFGGFVSSHIVGVLT-DGDKVRHFRP------------------------WQYVFMVLTTTYTVGAIVFLIFGTGQLQPW  147 (171)
Q Consensus        93 ~l~gii~p~i~G~iv-~~~~~~~~~~------------------------w~~vF~i~a~i~~~g~i~~~~~~~~e~q~w  147 (171)
                      +++.+++|.+.+++. +..     +.                        |+..|.+.+++.++..+.+.+...+|.++.
T Consensus       163 ~~g~~~g~~~~~~l~~~~~-----~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~p~~~~~  237 (438)
T 3o7q_A          163 SFGAIIAVVFGQSLILSNV-----PHQSQDVLDKMSPEQLSAYKHSLVLSVQTPYMIIVAIVLLVALLIMLTKFPALQSD  237 (438)
T ss_dssp             HHHHHHHHHHTTHHHHTSS-----CCCCHHHHHHSCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCCCCCTTT
T ss_pred             HHHHHHHHHHHHHHHhccc-----ccccccccccCCcchhhhhhhhhhhhHHHHHHHHHHHHHHHHHHHHHHcCCccccc
Confidence            999999999999988 442     33                        999998887777766666555544444443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.12  E-value=3.7e-06  Score=69.46  Aligned_cols=117  Identities=10%  Similarity=-0.007  Sum_probs=75.6

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hccC---CcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APNF---SEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~~---~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~   91 (171)
                      .++.+..||.....+.....+..  .++.   ..+....++...+.-...+...+...+...|..| ++.+..+|+.+..
T Consensus        84 ~l~dr~g~r~~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~l~G~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  163 (451)
T 1pw4_A           84 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA  163 (451)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHhcCchHHHHHHHHHHHHHHHHHHhhhhccccHHHHHHHHHHHHHHhhhccchHHHHHHHHCCchhhhHHHHHHHHH
Confidence            45666777877777766655432  2220   2333322222222222333334455566678777 6789999999999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ..++.+++|.+.|++.+..     ++|+.+|++.+++.++..+...++
T Consensus       164 ~~~g~~~g~~~~~~l~~~~-----g~w~~~f~~~~~~~~~~~~~~~~~  206 (451)
T 1pw4_A          164 HNVGGGIPPLLFLLGMAWF-----NDWHAALYMPAFCAILVALFAFAM  206 (451)
T ss_dssp             HHHHHTSHHHHHHHHHHHT-----CCSTTCTHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHHHHHHHh-----ccHHHHHHHHHHHHHHHHHHHHhh
Confidence            9999999999999877642     249999999888877666554443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=97.88  E-value=7.9e-05  Score=61.38  Aligned_cols=68  Identities=25%  Similarity=0.346  Sum_probs=55.8

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhh-hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSF-GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l-~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ...+....|..| +..|.+.|+.+...++ ++.++|.+.|++.+..      +|+.+|.+.+++.+++.+.+.++.
T Consensus       365 ~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~------g~~~~~~~~~~~~~~~~~~~~~~~  434 (451)
T 1pw4_A          365 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFF------GWDGGFMVMIGGSILAVILLIVVM  434 (451)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSS------CSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhc------CcHHHHHHHHHHHHHHHHHHHHHH
Confidence            333455667777 5689999999999999 9999999999998863      599999999988888887766653

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=97.68  E-value=0.00012  Score=60.85  Aligned_cols=115  Identities=13%  Similarity=0.018  Sum_probs=71.0

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhh--hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHH-HHHHHhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDI--APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGL-ANTLSSF   94 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l--~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi-~n~~g~l   94 (171)
                      +..+..||.....+.....+.+  .++. .+....+....+.....+....+.+....|..| +..|+..|+ .|....+
T Consensus       282 l~dr~g~~~~l~~~~~~~~~~~~~~~~~-~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~l  360 (417)
T 2cfq_A          282 IINRIGGKNALLLAGTIMSVRIIGSSFA-TSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQL  360 (417)
T ss_dssp             HHHHHCHHHHHHHHHHHHHHHHHHHTTC-CSHHHHHHHTTHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHTTTHHH
T ss_pred             HHHHhcHHHHHHHHHHHHHHHHHHHHHh-ccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHhH
Confidence            3445566666655655554432  2222 333322222111111122222344566667777 557888888 4889999


Q ss_pred             hhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         95 GGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        95 ~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      +++++|.+.|++.+.      .+|+..|.+.+++.+++.+.+.++.
T Consensus       361 g~~~gp~l~G~l~~~------~g~~~~f~~~~~~~l~~~~~~~~~~  400 (417)
T 2cfq_A          361 AMIFMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTL  400 (417)
T ss_dssp             HHHHHTHHHHTHHHH------SHHHHHHHHHHHHHHHHHHHHTTSS
T ss_pred             HHHHhhhhHHHHHHh------cCcHHHHHHHHHHHHHHHHHHHhhh
Confidence            999999999988775      3488899998988888887765543

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.43  E-value=0.00054  Score=57.24  Aligned_cols=123  Identities=11%  Similarity=0.048  Sum_probs=70.8

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhhh----c-cCCcchHHHHHHHHHHHHhhhhcc-hhhhhhhhcccc-chHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDIA----P-NFSEDPIFAVAMFTLALTFNGAVT-AGYLGNGLDIAP-NFSGTIFGLANT   90 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l~----~-~~~~~~~~av~ll~la~~~~~~~~-~g~~~~~~diap-~~ag~v~gi~n~   90 (171)
                      .+..+..||.....+.....+.+.    . ........++..+.+.....+... +..|....|+.| +..++..|+.+.
T Consensus       334 ~l~dr~Grr~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~E~fPt~~R~~~~g~~~~  413 (491)
T 4gc0_A          334 MTVDKFGRKPLQIIGALGMAIGMFSLGTAFYTQAPGIVALLSMLFYVAAFAMSWGPVCWVLLSEIFPNAIRGKALAIAVA  413 (491)
T ss_dssp             HHHHHHCSHHHHHHHHHHHHHHHHHHHHHHHTTCCHHHHHHHHHHHHHHHHTTTTHHHHHHHHHSSCTTTHHHHHHHHHH
T ss_pred             HHHHhhcCcchhccchHHHHHHHHHHHHHHhcccchHHHHHHHHHHHHHHHhHHHHHHHHHHHHhCCHhHHHHHHHHHHH
Confidence            455566777766666555543321    1 122233333333332222222221 234566678888 567999999999


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .+.+++++.|.+...+.+.........+...|++.+++.+++.++..++.
T Consensus       414 ~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~  463 (491)
T 4gc0_A          414 AQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFV  463 (491)
T ss_dssp             HHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHC
T ss_pred             HHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHhee
Confidence            99999999988877765431000012355678888888887777554443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=97.37  E-value=0.00047  Score=56.57  Aligned_cols=109  Identities=11%  Similarity=0.040  Sum_probs=64.9

Q ss_pred             HHHHHHHHHHHHHhhHHHHhhhhc-cCCcchHHHHHHHHHHHHhhhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhh
Q psy15816         19 FTLALTFNGAVTAGYLGNGLDIAP-NFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGF   97 (171)
Q Consensus        19 l~l~~ark~~~~~G~~~~~l~l~~-~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gi   97 (171)
                      +..+..||.....+.....+.+.. ....+......+..++ .+.+...+..++...+..|++.+...++.+ .+.+++.
T Consensus       318 l~~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g-~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~-~~~~g~~  395 (438)
T 3o7q_A          318 LISRFAPHKVLAAYALIAMALCLISAFAGGHVGLIALTLCS-AFMSIQYPTIFSLGIKNLGQDTKYGSSFIV-MTIIGGG  395 (438)
T ss_dssp             HHHHSCHHHHHHHHHHHHHHHHHHHHHCCHHHHHHHHHHHH-HHHTTHHHHHHHHHHSSCGGGHHHHHHHHH-HTTHHHH
T ss_pred             HHHHhcchHHHHHHHHHHHHHHHHHHHcCCcHHHHHHHHHH-HHHHHHHHHHHHHHHhhccccccchhhHHH-HHHHHHH
Confidence            444555666665555555443221 1223333222222222 333333455566655666766788888877 7789999


Q ss_pred             hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHH
Q psy15816         98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAI  134 (171)
Q Consensus        98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i  134 (171)
                      ++|.+.|++.+..     ++|+..|.+.++..++..+
T Consensus       396 ~~~~~~g~l~~~~-----g~~~~~~~~~~~~~~~~~~  427 (438)
T 3o7q_A          396 IVTPVMGFVSDAA-----GNIPTAELIPALCFAVIFI  427 (438)
T ss_dssp             HHHHHHHHHHHHH-----TSSGGGGHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHh-----cchHHHHHHHHHHHHHHHH
Confidence            9999999998863     4588888876655554443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.28  E-value=0.0015  Score=55.10  Aligned_cols=113  Identities=13%  Similarity=-0.017  Sum_probs=68.4

Q ss_pred             HHHHH-HHHHHHHHhhHHHHhhh--hccCCc-chHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHH---HHHHHHH
Q psy15816         19 FTLAL-TFNGAVTAGYLGNGLDI--APNFSE-DPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGT---IFGLANT   90 (171)
Q Consensus        19 l~l~~-ark~~~~~G~~~~~l~l--~~~~~~-~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~---v~gi~n~   90 (171)
                      ++.+. .||.....+.....+..  .++. . +.........+.-...+...+...+...|..| +..+.   .+++.+.
T Consensus        77 l~dr~~g~r~~~~~~~~~~~~~~~~~~~~-~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~  155 (524)
T 2xut_A           77 IADRFFGKYNTILWLSLIYCVGHAFLAIF-EHSVQGFYTGLFLIALGSGGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYF  155 (524)
T ss_dssp             HHTTSSCSHHHHHHHHHHHHHHHHHHHHT-SSCHHHHHHHHHHHHHHHHTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHH
T ss_pred             HHHHHhcchHHHHHHHHHHHHHHHHHHHh-cccHHHHHHHHHHHHHhccccchhHHHHHHHHcCccchHHHHHHHHHHHH
Confidence            34444 66666666655554432  2222 3 43332222222222233333444556667666 44444   4555999


Q ss_pred             HHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhh
Q psy15816         91 LSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLI  138 (171)
Q Consensus        91 ~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~  138 (171)
                      ..+++++++|.+.|++.+.      .+|+..|.+.+++.+++.+.+.+
T Consensus       156 ~~~~g~~~g~~~~~~l~~~------~g~~~~f~~~~~~~~~~~~~~~~  197 (524)
T 2xut_A          156 TINFGSFFASLSMPLLLKN------FGAAVAFGIPGVLMFVATVFFWL  197 (524)
T ss_dssp             HHHHHHHHHHHTSTHHHHT------SCHHHHHHHHHHHHHHHHHHHHS
T ss_pred             HHHHHHHHHHHHHHHHhcc------ccHHHHHHHHHHHHHHHHHHHHH
Confidence            9999999999999988765      46999999988887777666544

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.15  E-value=0.00044  Score=58.47  Aligned_cols=73  Identities=18%  Similarity=0.207  Sum_probs=52.5

Q ss_pred             cchhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCCh---------hHHHHHHHHHHHHHHH
Q psy15816         65 VTAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPW---------QYVFMVLTTTYTVGAI  134 (171)
Q Consensus        65 ~~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w---------~~vF~i~a~i~~~g~i  134 (171)
                      ..+..+....|..| +..|.++|+.++...++++++|.+.|.+.+..    ..+|         +..|.+.+++.+++.+
T Consensus       422 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~~~~~~----~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  497 (524)
T 2xut_A          422 VSATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVSVKSPT----VTEQIVQTGMSVTAFQMFFFAGFAILAAI  497 (524)
T ss_dssp             HHHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHHTTSCH----HHHHHHHHHSCHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcccc----cccccccccccccccHHHHHHHHHHHHHH
Confidence            33555666777777 56899999999999999999999999887642    1234         3447788888888887


Q ss_pred             hhhheec
Q psy15816        135 VFLIFGT  141 (171)
Q Consensus       135 ~~~~~~~  141 (171)
                      +++++.+
T Consensus       498 ~~~~~~~  504 (524)
T 2xut_A          498 VFALYAR  504 (524)
T ss_dssp             HHC----
T ss_pred             HHHHHHH
Confidence            7766543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.09  E-value=0.00079  Score=56.31  Aligned_cols=68  Identities=18%  Similarity=0.196  Sum_probs=51.9

Q ss_pred             chhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         66 TAGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        66 ~~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      .+..+....|..| +..|.+.|+.+...+++++++|.+.|++.+.       .+...|.+.+++.+++.++..++.
T Consensus       404 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~~~~~~~~  472 (491)
T 4aps_A          404 SPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAK-------SEVAYFSYFGLGSVVLGIVLVFLS  472 (491)
T ss_dssp             TTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGS-------STTHHHHHTHHHHHHHHHHHHHC-
T ss_pred             hHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-------cHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3455666777778 5579999999999999999999999987653       356678887777777777666554

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=96.97  E-value=0.00041  Score=56.00  Aligned_cols=63  Identities=13%  Similarity=0.033  Sum_probs=49.4

Q ss_pred             hhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhh
Q psy15816         68 GYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVF  136 (171)
Q Consensus        68 g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~  136 (171)
                      ...+...|..| ++.+..+++.+....++.+++|.+.+++.+.      .+|+..|.+.+.+.++..+..
T Consensus       108 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~------~~~~~~~~~~~~~~~~~~~~~  171 (375)
T 2gfp_A          108 MARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTM------WNWRACYLFLLVLCAGVTFSM  171 (375)
T ss_dssp             HHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCH------HHHHHHHHHHHHHHHHHHCCC
T ss_pred             hHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHh------ccHHHHHHHHHHHHHHHHHHH
Confidence            33444556665 5679999999999999999999999988764      369999999888877766633

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=94.28  E-value=0.028  Score=44.98  Aligned_cols=60  Identities=15%  Similarity=0.151  Sum_probs=46.5

Q ss_pred             hhhcchhhhhhhhccccchHHHHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHH
Q psy15816         62 NGAVTAGYLGNGLDIAPNFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTT  127 (171)
Q Consensus        62 ~~~~~~g~~~~~~diap~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~  127 (171)
                      .+...+...+...|..|++.|.+.|+.+...++++.++|.+.|.+.+.      ++|+..|.+.+.
T Consensus       305 ~~~~~~~~~~~~~~~~p~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~------~~~~~~~~~~~~  364 (375)
T 2gfp_A          305 AGMLFPLATSGAMEPFPFLAGTAGALVGGLQNIGSGVLASLSAMLPQT------GQGSLGLLMTLM  364 (375)
T ss_dssp             HHHTSSTTHHHHHTHHHHHHHHHHHHHHHHHHHHHHCCSTTCTHHHHH------HHHHHHHHHHHH
T ss_pred             HHHhhHHHHHHHHHhCCcccchHHHHHHHHHHHHHHHHHHHHHHHhcC------CcccHHHHHHHH
Confidence            344445556666787788889999999999999999999999988654      467777776443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=94.20  E-value=0.13  Score=42.54  Aligned_cols=66  Identities=12%  Similarity=0.169  Sum_probs=40.4

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhhhhhhhhhheeecCCCcc--ccCChhHHHHHHHHHHHHH
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGGFVSSHIVGVLTDGDKVR--HFRPWQYVFMVLTTTYTVG  132 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~--~~~~w~~vF~i~a~i~~~g  132 (171)
                      +.......|.+| ++.|...++.+....++.++++.+...+.......  ....|+..+.+.....++.
T Consensus       145 ~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  213 (491)
T 4gc0_A          145 MLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLF  213 (491)
T ss_dssp             HHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHH
T ss_pred             HHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhh
Confidence            334455568888 67899999999888888888877755444332100  1134676666554444433

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	171
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.2
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	98.14
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	98.1
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	84.96

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.20  E-value=9.9e-07  Score=70.36  Aligned_cols=124  Identities=10%  Similarity=-0.021  Sum_probs=77.3

Q ss_pred             HHHHHHHHHHHHHHhhHHHHhhh--hcc---CCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHHHHH
Q psy15816         18 MFTLALTFNGAVTAGYLGNGLDI--APN---FSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLANTL   91 (171)
Q Consensus        18 ~l~l~~ark~~~~~G~~~~~l~l--~~~---~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~n~~   91 (171)
                      .++.+..||.....|.+...+..  .++   ...+...-.+...+.....+...+.......|..| ++.+..+|+.+..
T Consensus        81 ~l~Dr~g~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~i~~~~~~~~r~~~~~~~~~~  160 (447)
T d1pw4a_          81 SVSDRSNPRVFLPAGLILAAAVMLFMGFVPWATSSIAVMFVLLFLCGWFQGMGWPPCGRTMVHWWSQKERGGIVSVWNCA  160 (447)
T ss_dssp             HHHHHSCHHHHHHHHHHHHHHHHHHHHHCHHHHSSSSHHHHHHHHHHHHHHHTHHHHHHHHHTTCTTTHHHHHHHHHHHH
T ss_pred             HHHHHcCchHHHHHHHHHHHHHHhhccccchhhhhHHHHHHHHHHHHHhhhhhhhHHHHHHHHHHHhhcccccccccccc
Confidence            45566678887777776655432  111   11222222222222222233333444455566666 6689999999999


Q ss_pred             HhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecccccC
Q psy15816         92 SSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTGQLQP  146 (171)
Q Consensus        92 g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~e~q~  146 (171)
                      ..++++++|.+.+.+....     ++|+..|.+.+.+.++..++...+.+..+++
T Consensus       161 ~~~g~~i~~~~~~~~~~~~-----~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         161 HNVGGGIPPLLFLLGMAWF-----NDWHAALYMPAFCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             HHHHHTSHHHHHHHHHHHT-----CCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             cchhhhhhhhhhhhHhhhh-----hcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence            9999999999988777653     5799999988887776666655554444333

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=98.14  E-value=6.5e-06  Score=65.42  Aligned_cols=68  Identities=26%  Similarity=0.383  Sum_probs=52.4

Q ss_pred             hhhhhhhhcccc-chHHHHHHHHHHHHhhhh-hhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhee
Q psy15816         67 AGYLGNGLDIAP-NFSGTIFGLANTLSSFGG-FVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFG  140 (171)
Q Consensus        67 ~g~~~~~~diap-~~ag~v~gi~n~~g~l~g-ii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~  140 (171)
                      ...+....|..| +..|.+.|+.|+.++++| +++|.+.|++.+.      .+|+..|.+.++..+++.++..++.
T Consensus       362 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~------~g~~~~~~~~~~~~~~~~~~~~~~~  431 (447)
T d1pw4a_         362 MLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDF------FGWDGGFMVMIGGSILAVILLIVVM  431 (447)
T ss_dssp             HHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHS------SCSHHHHHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHH------hChHHHHHHHHHHHHHHHHHHHHHH
Confidence            344556667777 567999999999998865 6689999999887      3689999888887777777666554

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=98.10  E-value=6.9e-06  Score=63.44  Aligned_cols=116  Identities=15%  Similarity=0.088  Sum_probs=74.5

Q ss_pred             HHHHHHHHHHHhhHHHHhhh-hccCCcchHHHHHHHHHHHHhhhhcchhhhhhhhcccc-chHHHHHHHH-HHHHhhhhh
Q psy15816         21 LALTFNGAVTAGYLGNGLDI-APNFSEDPIFAVAMFTLALTFNGAVTAGYLGNGLDIAP-NFSGTIFGLA-NTLSSFGGF   97 (171)
Q Consensus        21 l~~ark~~~~~G~~~~~l~l-~~~~~~~~~~av~ll~la~~~~~~~~~g~~~~~~diap-~~ag~v~gi~-n~~g~l~gi   97 (171)
                      .+..|+.....+.....+.. ......+.........+.....+...+...+...|..| +..|.+.|+. +....+++.
T Consensus       284 ~r~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~  363 (417)
T d1pv7a_         284 NRIGGKNALLLAGTIMSVRIIGSSFATSALEVVILKTLHMFEVPFLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMI  363 (417)
T ss_dssp             HHHCHHHHHHHHHHHHHHHHHHHHTCCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHH
T ss_pred             cccccccchhhhHHHHHHhhhccccccccchhhHHHHHHHHHHHHHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHH
Confidence            34445555555555554432 22223454444443333333344444555666677777 5679999975 556779999


Q ss_pred             hhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhheecc
Q psy15816         98 VSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIFGTG  142 (171)
Q Consensus        98 i~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~~~~  142 (171)
                      ++|.+.|++.+.      .+|+.+|.+.+++.+++.++..++.++
T Consensus       364 i~~~~~G~l~~~------~g~~~~~~~~~~~~~~~~~~~~~~l~~  402 (417)
T d1pv7a_         364 FMSVLAGNMYES------IGFQGAYLVLGLVALGFTLISVFTLSG  402 (417)
T ss_dssp             HHHHHHHHHHHH------HCHHHHHHHHHHHHHHHHHHHHHHSCC
T ss_pred             HHHHHHHHHHHH------HCHHHHHHHHHHHHHHHHHHHHHhhcC
Confidence            999999999886      369999999998888888777666543

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=84.96  E-value=0.12  Score=38.53  Aligned_cols=50  Identities=22%  Similarity=0.288  Sum_probs=30.7

Q ss_pred             HHHHHHHHHHhhhhhhhhhhhheeecCCCccccCChhHHHHHHHHHHHHHHHhhhhe
Q psy15816         83 TIFGLANTLSSFGGFVSSHIVGVLTDGDKVRHFRPWQYVFMVLTTTYTVGAIVFLIF  139 (171)
Q Consensus        83 ~v~gi~n~~g~l~gii~p~i~G~iv~~~~~~~~~~w~~vF~i~a~i~~~g~i~~~~~  139 (171)
                      ...+..+.....+..++|.+.+.+.+.       .|+..+........+..+...++
T Consensus       138 ~~~~~~~~~~~~~~~~~~~~~~~l~~~-------~~~~~~~~~~~~~~~~~~~~~~~  187 (417)
T d1pv7a_         138 FEFGRARMFGCVGWALGASIVGIMFTI-------NNQFVFWLGSGCALILAVLLFFA  187 (417)
T ss_dssp             CCHHHHHHHHHHHHHHHHHHHHHHHHH-------CHHHHHHHHHHHHHHHHHHHHSS
T ss_pred             HHHHHHhhhhccccccccccccccccc-------cccccccchhhHHHHHHHHHHHH
Confidence            345566677777778888888877554       36666665555554444444433