Psyllid ID: psy1582

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------13
Protein Sequence
MHDNRPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN
Secondary Structure (PSIPRED)
ccccccccccccccEEEEccccccccEEEEEcccccEEEEEcccccccccccccccccHHHHHHHHHHHHHHHHHHHHHcccccccEEEEEcccccccEEEEccccccccccEEEEccccccccccccc
Secondary Structure Prediction (SSPRO)
cccccccccccccEEEEEEccccccEEEEEEcccccEEEHHHHHHHHcccccccccccHHHHHHHHHHHHHHHHHHHHHHcccHHHEEEEEEEEccccEEEEEcccccEcccEEEEcccHHHHHHHHcc
Coil and Loop (DISEMBL)
mhdnrpqavaptqIRDRLSATYHTSRVLIISALTQEEvvshsmdistispqegwaeqdpMEILQAVQTTMDRAIEKLSahglsrddivTLGITNQRETTVVWdlntgeplyNAIEQGLRIVdcgsgrfn
Flexible Loop (DISEMBL)
mhdnrpqavaptqirdrlsatYHTSRVLIISALTQEEVVSHSMDISTispqegwaeqDPMEILQAVQTTMDRAIEKLsahglsrddivtlgitnqrettvvWDLNTGEPLynaieqglrivdcgsgrfn
Low Complexity Region (SEG)
MHDNRPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN
Disordered region (IsUnstruct)
*****************LSATYHTSRVLIISALTQEEVVSHSM*I***************EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCG*****
Disordered Region (DISOPRED)
**************RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCG*****
Disordered Region (DISEMBL)
**********PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN
Disordered Region (DISPRO)
********VAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN
Transmembrane Helix (TMHMM)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (HMMTOP)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhhhhooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (MEMSAT_SVM)
iiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiihhhhhhhhhhhhhhhhoooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
ooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP HMM Mode)
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Signal Peptide (SignalP NN Mode)
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Coiled Coils (COILS)
MHDNRPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	129	2.2.26 [Sep-21-2011]
Q21944	502	Probable glycerol kinase	yes	N/A	0.705	0.181	0.472	4e-20
Q4R4D5	553	Glycerol kinase 2 OS=Maca	N/A	N/A	0.868	0.202	0.421	1e-19
Q9WU65	554	Glycerol kinase 2 OS=Mus	yes	N/A	0.713	0.166	0.456	1e-19
Q64516	559	Glycerol kinase OS=Mus mu	no	N/A	0.705	0.162	0.461	4e-19
Q0IID9	559	Glycerol kinase OS=Bos ta	yes	N/A	0.705	0.162	0.461	5e-19
Q63060	524	Glycerol kinase OS=Rattus	no	N/A	0.705	0.173	0.461	7e-19
Q14410	553	Glycerol kinase 2 OS=Homo	yes	N/A	0.713	0.166	0.445	8e-19
Q14409	553	Putative glycerol kinase	no	N/A	0.705	0.164	0.450	2e-18
P32189	559	Glycerol kinase OS=Homo s	no	N/A	0.705	0.162	0.450	2e-18
Q8RHZ9	497	Glycerol kinase OS=Fusoba	yes	N/A	0.682	0.177	0.450	5e-16

>sp|Q21944|GLPK_CAEEL Probable glycerol kinase OS=Caenorhabditis elegans GN=R11F4.1 PE=3 SV=1

 Score = 96.7 bits (239), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 43/91 (47%), Positives = 61/91 (67%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           +SR L+  A T E V SH +++  + P  GW E DPME+   V + + + IEKL   G+S
Sbjct: 13  SSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKTIEKLENLGIS 72

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            D+I ++G+ NQRET++VWD  TG+PLYNAI
Sbjct: 73  ADEIKSVGVANQRETSIVWDKETGKPLYNAI 103

Caenorhabditis elegans (taxid: 6239)
EC: 2EC: .EC: 7EC: .EC: 1EC: .EC: 3EC: 0

>sp|Q4R4D5|GLPK2_MACFA Glycerol kinase 2 OS=Macaca fascicularis GN=GK2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 48/114 (42%), Positives = 69/114 (60%), Gaps = 2/114 (1%)

Query: 1   MHDNRPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPM 60
           M D +  AV P  +   +     ++R L+ S+ T E +  H ++++   P+EGW EQDP 
Sbjct: 1   MADPKTAAVGP--LVGAVVQGTDSTRFLVFSSKTAELLSHHKVELTQEFPKEGWVEQDPK 58

Query: 61  EILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           EILQ+V   + R  EKL    +   +I  +GI+NQRETTV+WD  TGEPLYNA+
Sbjct: 59  EILQSVYECIARTCEKLDEMNIDISNIKAVGISNQRETTVIWDKLTGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Macaca fascicularis (taxid: 9541)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q9WU65|GLPK2_MOUSE Glycerol kinase 2 OS=Mus musculus GN=Gk2 PE=2 SV=1

 Score = 94.7 bits (234), Expect = 1e-19,   Method: Composition-based stats.
 Identities = 42/92 (45%), Positives = 65/92 (70%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
           +++R L+ ++ T E V SH ++++   P+EGW EQDP EIL++V   + +A EKL+   +
Sbjct: 21  NSTRFLVFNSKTAELVCSHQVELTQEYPKEGWVEQDPKEILKSVYECIAKACEKLAEVNI 80

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              +I  +G++NQRETTVVWD  TG+PLYNA+
Sbjct: 81  DISNIKAIGVSNQRETTVVWDKFTGDPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q64516|GLPK_MOUSE Glycerol kinase OS=Mus musculus GN=Gk PE=2 SV=2

 Score = 93.2 bits (230), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct: 22  STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct: 82  ISNIKAIGVSNQRETTVVWDKVTGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Mus musculus (taxid: 10090)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q0IID9|GLPK_BOVIN Glycerol kinase OS=Bos taurus GN=GK PE=2 SV=1

 Score = 92.8 bits (229), Expect = 5e-19,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct: 22  STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct: 82  ISNIKAIGVSNQRETTVVWDKLTGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Bos taurus (taxid: 9913)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q63060|GLPK_RAT Glycerol kinase OS=Rattus norvegicus GN=Gk PE=2 SV=1

 Score = 92.4 bits (228), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct: 22  STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct: 82  ISNIKAIGVSNQRETTVVWDKLTGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism (By similarity). Increases the binding of activated glucocorticoid-receptor to nuclei in the presence of ATP.

Rattus norvegicus (taxid: 10116)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q14410|GLPK2_HUMAN Glycerol kinase 2 OS=Homo sapiens GN=GK2 PE=2 SV=2

 Score = 92.0 bits (227), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 41/92 (44%), Positives = 62/92 (67%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
           +++R L+ ++ T E +  H ++++   P+EGW EQDP EILQ+V   + R  EKL    +
Sbjct: 21  NSTRFLVFNSKTAELLSHHKVELTQEFPKEGWVEQDPKEILQSVYECIARTCEKLDELNI 80

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              +I  +G++NQRETTV+WD  TGEPLYNA+
Sbjct: 81  DISNIKAVGVSNQRETTVIWDKLTGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q14409|GLPK3_HUMAN Putative glycerol kinase 3 OS=Homo sapiens GN=GK3P PE=5 SV=2

 Score = 91.3 bits (225), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 60/91 (65%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ ++ T E +  H ++I    P+EGW EQDP EIL +V   +++  EKL    + 
Sbjct: 22  STRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKTCEKLGQLNIG 81

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct: 82  ISNIKAIGVSNQRETTVVWDKITGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|P32189|GLPK_HUMAN Glycerol kinase OS=Homo sapiens GN=GK PE=1 SV=3

 Score = 90.9 bits (224), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 60/91 (65%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ ++ T E +  H ++I    P+EGW EQDP EIL +V   +++  EKL    + 
Sbjct: 22  STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKTCEKLGQLNID 81

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct: 82  ISNIKAIGVSNQRETTVVWDKITGEPLYNAV 112

Key enzyme in the regulation of glycerol uptake and metabolism.

Homo sapiens (taxid: 9606)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

>sp|Q8RHZ9|GLPK_FUSNN Glycerol kinase OS=Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) GN=glpK PE=3 SV=1

 Score = 82.8 bits (203), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 41/91 (45%), Positives = 55/91 (60%), Gaps = 3/91 (3%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   I+   +Q  +     + + I P EGW E DPMEI  +    +   I +    G+S
Sbjct: 12  TSSRAILFDESQNIIGVAQKEFTQIYPNEGWVEHDPMEIWSSQSGVLSEVIARA---GIS 68

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           + DI+ LGITNQRETT+VWD NTG+P+YNAI
Sbjct: 69  QHDIIALGITNQRETTIVWDKNTGKPVYNAI 99

Key enzyme in the regulation of glycerol uptake and metabolism.

Fusobacterium nucleatum subsp. nucleatum (strain ATCC 25586 / CIP 101130 / JCM 8532 / LMG 13131) (taxid: 190304)

EC: 2

EC: .

EC: 7

EC: .

EC: 1

EC: .

EC: 3

EC: 0

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
380028540	615	PREDICTED: putative glycerol kinase 3-li	0.868	0.182	0.522	6e-23
328791677	616	PREDICTED: putative glycerol kinase 3-li	0.713	0.149	0.597	6e-23
322803073	611	hypothetical protein SINV_04309 [Solenop	0.713	0.150	0.586	2e-22
383865082	617	PREDICTED: putative glycerol kinase 3-li	0.713	0.149	0.554	5e-22
350419420	615	PREDICTED: putative glycerol kinase 3-li	0.705	0.147	0.571	7e-22
340709010	615	PREDICTED: putative glycerol kinase 3-li	0.705	0.147	0.571	7e-22
307192511	619	Putative glycerol kinase 3 [Harpegnathos	0.705	0.147	0.538	2e-21
307184082	606	Putative glycerol kinase 3 [Camponotus f	0.705	0.150	0.582	3e-21
332375460	556	unknown [Dendroctonus ponderosae]	0.596	0.138	0.594	6e-21
290565764	557	glycerol kinase-like protein [Bombyx mor	0.705	0.163	0.527	1e-20

>gi|380028540|ref|XP_003697956.1| PREDICTED: putative glycerol kinase 3-like [Apis florea]

 Score =  112 bits (279), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 59/113 (52%), Positives = 70/113 (61%), Gaps = 1/113 (0%)

Query: 3   DNRPQAVA-PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPME 61
           D  P +V  P  +   +     T R ++ +A    EV SH +DI  ISPQEGW EQDP E
Sbjct: 61  DTMPSSVKKPGPLIGVIDVGTRTVRFVVFNAKHVAEVASHQIDIEQISPQEGWMEQDPKE 120

Query: 62  ILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           IL AV+  +   I KL   GL  D+IVT+GITNQRETTV WD  TGEPLYNAI
Sbjct: 121 ILFAVKACIKDVIRKLDVLGLKMDEIVTIGITNQRETTVAWDAMTGEPLYNAI 173

Source: Apis florea

Species: Apis florea

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|328791677|ref|XP_392782.4| PREDICTED: putative glycerol kinase 3-like [Apis mellifera]

 Score =  112 bits (279), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 55/92 (59%), Positives = 63/92 (68%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
            T R ++ +A    EV SH +DI  ISPQEGW EQDP EIL AV+  +   I KL   GL
Sbjct: 81  RTVRFVVFNAKHVAEVASHQIDIEQISPQEGWMEQDPKEILFAVKACIKDVIRKLDVLGL 140

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             D+IVT+GITNQRETTV WD  TGEPLYNAI
Sbjct: 141 KMDEIVTIGITNQRETTVAWDAMTGEPLYNAI 172

Source: Apis mellifera

Species: Apis mellifera

Genus: Apis

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322803073|gb|EFZ23161.1| hypothetical protein SINV_04309 [Solenopsis invicta]

 Score =  110 bits (274), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 54/92 (58%), Positives = 64/92 (69%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
            T R ++ +A    EV SH +DI  ISPQEGW EQDP EIL AV+  +   I KL   G+
Sbjct: 84  RTVRFVVFNAKHVAEVASHQIDIEQISPQEGWVEQDPKEILFAVKACIKDVIRKLDVLGM 143

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             D+IVT+GITNQRETTVVWD  TG+PLYNAI
Sbjct: 144 KIDEIVTVGITNQRETTVVWDAITGDPLYNAI 175

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|383865082|ref|XP_003708004.1| PREDICTED: putative glycerol kinase 3-like [Megachile rotundata]

 Score =  108 bits (271), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 51/92 (55%), Positives = 62/92 (67%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
            T R ++ +A    EV SH +D+  I PQEGW EQDP EIL AV+  +   I +    GL
Sbjct: 82  RTVRFVVFTAKHVAEVASHQIDVEQICPQEGWVEQDPKEILFAVKACIKDVIRRFDILGL 141

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             D+IVT+GITNQRETT+VWD  TGEPLYNAI
Sbjct: 142 KVDEIVTIGITNQRETTIVWDATTGEPLYNAI 173

Source: Megachile rotundata

Species: Megachile rotundata

Genus: Megachile

Family: Megachilidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|350419420|ref|XP_003492175.1| PREDICTED: putative glycerol kinase 3-like isoform 1 [Bombus impatiens] gi|350419422|ref|XP_003492176.1| PREDICTED: putative glycerol kinase 3-like isoform 2 [Bombus impatiens]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 64/91 (70%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           T R ++ +A    EV SH +DI  ISPQEGW EQDP EIL AV+T +   + KL   GL 
Sbjct: 81  TVRFVVFNAKHIAEVASHQIDIEQISPQEGWMEQDPREILFAVKTCIKDVVRKLDVLGLK 140

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            ++I+T+GITNQRETT+ WD  TGEPLYNAI
Sbjct: 141 INEIITIGITNQRETTLAWDSTTGEPLYNAI 171

Source: Bombus impatiens

Species: Bombus impatiens

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|340709010|ref|XP_003393109.1| PREDICTED: putative glycerol kinase 3-like isoform 1 [Bombus terrestris] gi|340709012|ref|XP_003393110.1| PREDICTED: putative glycerol kinase 3-like isoform 2 [Bombus terrestris] gi|340709014|ref|XP_003393111.1| PREDICTED: putative glycerol kinase 3-like isoform 3 [Bombus terrestris]

 Score =  108 bits (270), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 52/91 (57%), Positives = 64/91 (70%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           T R ++ +A    EV SH +DI  ISPQEGW EQDP EIL AV+T +   + KL   GL 
Sbjct: 81  TVRFVVFNAKHIAEVASHQIDIEQISPQEGWMEQDPREILFAVKTCIKDVVRKLDVLGLK 140

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            ++I+T+GITNQRETT+ WD  TGEPLYNAI
Sbjct: 141 INEIITIGITNQRETTLAWDSTTGEPLYNAI 171

Source: Bombus terrestris

Species: Bombus terrestris

Genus: Bombus

Family: Apidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307192511|gb|EFN75699.1| Putative glycerol kinase 3 [Harpegnathos saltator]

 Score =  107 bits (266), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 49/91 (53%), Positives = 64/91 (70%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           T R ++ +A    E+ SH +DI  I+P+EGW EQDP EIL AV+T +   I K    G+ 
Sbjct: 89  TVRFVVFNAKHVAEIASHQIDIEQINPKEGWMEQDPKEILFAVKTCVKEVIRKFDVLGMK 148

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            D+IVT+GITNQRETT+ WD +TG+PLYNAI
Sbjct: 149 IDEIVTVGITNQRETTIAWDASTGDPLYNAI 179

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307184082|gb|EFN70617.1| Putative glycerol kinase 3 [Camponotus floridanus]

 Score =  106 bits (264), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 53/91 (58%), Positives = 64/91 (70%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           T R ++ +A    EV SH +DI  IS QEGW EQDP  IL AV+T +D    KL+  G+ 
Sbjct: 72  TVRFVVFNAKHVAEVASHQIDIEHISLQEGWMEQDPKNILMAVKTCVDNVNHKLNILGMK 131

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            D+IVT+GITNQRETTV+WD  TGEPLYNAI
Sbjct: 132 IDEIVTVGITNQRETTVIWDAITGEPLYNAI 162

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332375460|gb|AEE62871.1| unknown [Dendroctonus ponderosae]

 Score =  105 bits (262), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 47/79 (59%), Positives = 65/79 (82%), Gaps = 2/79 (2%)

Query: 36  EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
           +EV +HS+D+  I+PQEGW+EQDPM+IL+AV+T MD+ + ++ A+ +   +IVT+GITNQ
Sbjct: 34  KEVAAHSIDLEPITPQEGWSEQDPMKILEAVKTCMDKVVSEIGANKVK--NIVTIGITNQ 91

Query: 96  RETTVVWDLNTGEPLYNAI 114
           RETT+VWD  TG PLYNAI
Sbjct: 92  RETTIVWDKTTGIPLYNAI 110

Source: Dendroctonus ponderosae

Species: Dendroctonus ponderosae

Genus: Dendroctonus

Family: Curculionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|290565764|ref|NP_001166873.1| glycerol kinase-like protein [Bombyx mori] gi|229365686|dbj|BAG06923.2| glycerol kinase-3 [Bombyx mori]

 Score =  104 bits (259), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 48/91 (52%), Positives = 64/91 (70%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           T R +I  A   EE+VS+ MD + + P EGW EQDP EI+  ++   + AI++L+  G S
Sbjct: 21  TVRFVIYEAECSEELVSYQMDKTEVQPHEGWPEQDPYEIMHHIKLCAENAIDQLTELGYS 80

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           +DDI+TLGITNQRETT+ WD  TGEPL+ AI
Sbjct: 81  KDDIITLGITNQRETTIAWDKYTGEPLHPAI 111

Source: Bombyx mori

Species: Bombyx mori

Genus: Bombyx

Family: Bombycidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	129
FB|FBgn0035266	576	Gk "Glycerol kinase" [Drosophi	0.612	0.137	0.518	7.5e-20
ZFIN|ZDB-GENE-080204-72	534	zgc:172295 "zgc:172295" [Danio	0.705	0.170	0.505	1.3e-19
WB|WBGene00020007	502	R11F4.1 [Caenorhabditis elegan	0.705	0.181	0.472	5.1e-19
UNIPROTKB|F1NRQ6	552	GK "Uncharacterized protein" [	0.705	0.164	0.494	1.1e-18
UNIPROTKB|A6NP46	118	GK "Glycerol kinase" [Homo sap	0.713	0.779	0.445	2.8e-18
UNIPROTKB|K7GSX2	119	LOC100523928 "Uncharacterized	0.720	0.781	0.440	3.6e-18
MGI|MGI:1329027	554	Gk2 "glycerol kinase 2" [Mus m	0.713	0.166	0.456	4.8e-18
UNIPROTKB|E2RNT9	524	GK "Uncharacterized protein" [	0.705	0.173	0.461	8.9e-18
RGD|70893	524	Gk "glycerol kinase" [Rattus n	0.705	0.173	0.461	8.9e-18
UNIPROTKB|Q63060	524	Gk "Glycerol kinase" [Rattus n	0.705	0.173	0.461	8.9e-18

FB|FBgn0035266 Gk "Glycerol kinase" [Drosophila melanogaster (taxid:7227)]

 Score = 244 (91.0 bits), Expect = 7.5e-20, P = 7.5e-20
 Identities = 41/79 (51%), Positives = 61/79 (77%)

Query:    36 EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
             +E+ +H +++S I+PQ+GW EQDP+E++ ++    + AI++L   G S  DIVT+GITNQ
Sbjct:    54 KEIAAHRVELSVITPQDGWYEQDPLEMMASINKCAEEAIKQLPEQGFSASDIVTVGITNQ 113

Query:    96 RETTVVWDLNTGEPLYNAI 114
             RETT+VWD  TG+PLYNA+
Sbjct:   114 RETTIVWDAVTGKPLYNAL 132

GO:0005575 "cellular_component" evidence=ND

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISS;IMP

GO:0004370 "glycerol kinase activity" evidence=ISS;IMP

ZFIN|ZDB-GENE-080204-72 zgc:172295 "zgc:172295" [Danio rerio (taxid:7955)]

 Score = 241 (89.9 bits), Expect = 1.3e-19, P = 1.3e-19
 Identities = 46/91 (50%), Positives = 62/91 (68%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ +A T E +  H ++I    P+EGW E+DP EILQ+V   MDR  EKL+   + 
Sbjct:    27 STRFLVFNAKTAELLSHHQVEIKQSFPKEGWVEEDPKEILQSVYECMDRTCEKLTQLNID 86

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               +I  +G+TNQRETT+VWD  TGEPLYNAI
Sbjct:    87 VSNIKAVGVTNQRETTLVWDKQTGEPLYNAI 117

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005575 "cellular_component" evidence=ND

GO:0016740 "transferase activity" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

WB|WBGene00020007 R11F4.1 [Caenorhabditis elegans (taxid:6239)]

 Score = 235 (87.8 bits), Expect = 5.1e-19, P = 5.1e-19
 Identities = 43/91 (47%), Positives = 61/91 (67%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             +SR L+  A T E V SH +++  + P  GW E DPME+   V + + + IEKL   G+S
Sbjct:    13 SSRFLVFEADTGELVTSHQIEVRQLFPHGGWVEMDPMELYDTVVSCISKTIEKLENLGIS 72

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              D+I ++G+ NQRET++VWD  TG+PLYNAI
Sbjct:    73 ADEIKSVGVANQRETSIVWDKETGKPLYNAI 103

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|F1NRQ6 GK "Uncharacterized protein" [Gallus gallus (taxid:9031)]

 Score = 233 (87.1 bits), Expect = 1.1e-18, P = 1.1e-18
 Identities = 45/91 (49%), Positives = 61/91 (67%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             +SR L+ +A T E +  H ++I    P+EGW EQDP EIL++V   ++R  EKL    + 
Sbjct:    22 SSRFLVFNAKTAELLSHHQVEIQQKFPKEGWVEQDPKEILRSVHECVERTCEKLQQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               +I  +G++NQRETTVVWD  TGEPLYNAI
Sbjct:    82 ITNIKAIGVSNQRETTVVWDKTTGEPLYNAI 112

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

UNIPROTKB|A6NP46 GK "Glycerol kinase" [Homo sapiens (taxid:9606)]

 Score = 221 (82.9 bits), Expect = 2.8e-18, P = 2.8e-18
 Identities = 41/92 (44%), Positives = 61/92 (66%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ ++ T E +  H ++I    P+EGW EQDP EIL +V   +++  EKL    + 
Sbjct:    22 STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILHSVYECIEKTCEKLGQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAIE 115
               +I  +G++NQRETTVVWD  TGEPLYNA++
Sbjct:    82 ISNIKAIGVSNQRETTVVWDKITGEPLYNAVD 113

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

UNIPROTKB|K7GSX2 LOC100523928 "Uncharacterized protein" [Sus scrofa (taxid:9823)]

 Score = 220 (82.5 bits), Expect = 3.6e-18, P = 3.6e-18
 Identities = 41/93 (44%), Positives = 61/93 (65%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ ++ T E +  H +++    P+EGW EQDP EIL +V   +++  EKL    + 
Sbjct:    22 STRFLVFNSKTAELLSHHQVELKQEFPKEGWVEQDPKEILNSVYECIEKTCEKLGQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQ 116
               +I  +G++NQRETTVVWD  TGEPLYNA+ Q
Sbjct:    82 ISNIKAIGVSNQRETTVVWDKLTGEPLYNAVVQ 114

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

MGI|MGI:1329027 Gk2 "glycerol kinase 2" [Mus musculus (taxid:10090)]

 Score = 227 (85.0 bits), Expect = 4.8e-18, P = 4.8e-18
 Identities = 42/92 (45%), Positives = 65/92 (70%)

Query:    23 HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
             +++R L+ ++ T E V SH ++++   P+EGW EQDP EIL++V   + +A EKL+   +
Sbjct:    21 NSTRFLVFNSKTAELVCSHQVELTQEYPKEGWVEQDPKEILKSVYECIAKACEKLAEVNI 80

Query:    83 SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
                +I  +G++NQRETTVVWD  TG+PLYNA+
Sbjct:    81 DISNIKAIGVSNQRETTVVWDKFTGDPLYNAV 112

GO:0000166 "nucleotide binding" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

GO:0005524 "ATP binding" evidence=IEA

GO:0005737 "cytoplasm" evidence=IEA

GO:0005739 "mitochondrion" evidence=IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0016020 "membrane" evidence=IEA

GO:0016301 "kinase activity" evidence=IEA

GO:0016310 "phosphorylation" evidence=IEA

GO:0016740 "transferase activity" evidence=IEA

GO:0016773 "phosphotransferase activity, alcohol group as acceptor" evidence=IEA

UNIPROTKB|E2RNT9 GK "Uncharacterized protein" [Canis lupus familiaris (taxid:9615)]

 Score = 224 (83.9 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct:    22 STRFLVFNSRTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct:    82 ISNIKAIGVSNQRETTVVWDKLTGEPLYNAV 112

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0005975 "carbohydrate metabolic process" evidence=IEA

GO:0004370 "glycerol kinase activity" evidence=IEA

RGD|70893 Gk "glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct:    22 STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct:    82 ISNIKAIGVSNQRETTVVWDKLTGEPLYNAV 112

GO:0004370 "glycerol kinase activity" evidence=IEA;ISO

GO:0005524 "ATP binding" evidence=IEA

GO:0005634 "nucleus" evidence=IDA

GO:0005739 "mitochondrion" evidence=IEA;ISO;IDA

GO:0005741 "mitochondrial outer membrane" evidence=IEA

GO:0006071 "glycerol metabolic process" evidence=IEA;ISO

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

GO:0006641 "triglyceride metabolic process" evidence=ISO

GO:0009409 "response to cold" evidence=IEP

GO:0010033 "response to organic substance" evidence=IEP

GO:0016310 "phosphorylation" evidence=ISO

GO:0019563 "glycerol catabolic process" evidence=IEA

GO:0042393 "histone binding" evidence=IDA

GO:0042493 "response to drug" evidence=IEP

GO:0045471 "response to ethanol" evidence=IDA

GO:0046167 "glycerol-3-phosphate biosynthetic process" evidence=ISO

UNIPROTKB|Q63060 Gk "Glycerol kinase" [Rattus norvegicus (taxid:10116)]

 Score = 224 (83.9 bits), Expect = 8.9e-18, P = 8.9e-18
 Identities = 42/91 (46%), Positives = 61/91 (67%)

Query:    24 TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
             ++R L+ ++ T E +  H ++I    P+EGW EQDP EILQ+V   +++  EKL    + 
Sbjct:    22 STRFLVFNSKTAELLSHHQVEIKQEFPREGWVEQDPKEILQSVYECIEKTCEKLGQLNID 81

Query:    84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               +I  +G++NQRETTVVWD  TGEPLYNA+
Sbjct:    82 ISNIKAIGVSNQRETTVVWDKLTGEPLYNAV 112

GO:0006072 "glycerol-3-phosphate metabolic process" evidence=IEA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

ID	Name	Annotated EC number	Identity	Query coverage	Hit coverage	RBH(Q2H)	RBH(H2Q)
A3QIN4	GLPK_SHELP	2, ., 7, ., 1, ., 3, 0	0.5070	0.5271	0.1365	yes	N/A
A5VZG7	GLPK_PSEP1	2, ., 7, ., 1, ., 3, 0	0.5692	0.4806	0.1242	yes	N/A
C3KBM0	GLPK_PSEFS	2, ., 7, ., 1, ., 3, 0	0.5538	0.4806	0.1237	yes	N/A
Q4K734	GLPK_PSEF5	2, ., 7, ., 1, ., 3, 0	0.5692	0.4806	0.1237	yes	N/A
Q9X1E4	GLPK2_THEMA	2, ., 7, ., 1, ., 3, 0	0.5223	0.4961	0.1290	yes	N/A
Q88NX8	GLPK_PSEPK	2, ., 7, ., 1, ., 3, 0	0.5692	0.4806	0.1242	yes	N/A
B0TWZ7	GLPK_FRAP2	2, ., 7, ., 1, ., 3, 0	0.5492	0.5271	0.1362	yes	N/A
B0KUG0	GLPK_PSEPG	2, ., 7, ., 1, ., 3, 0	0.5692	0.4806	0.1242	yes	N/A
Q3K7I5	GLPK_PSEPF	2, ., 7, ., 1, ., 3, 0	0.5538	0.4806	0.124	yes	N/A
A8FQ89	GLPK_SHESH	2, ., 7, ., 1, ., 3, 0	0.5223	0.4961	0.1292	yes	N/A
A5UU55	GLPK_ROSS1	2, ., 7, ., 1, ., 3, 0	0.5223	0.4961	0.1285	yes	N/A
Q1IE16	GLPK_PSEE4	2, ., 7, ., 1, ., 3, 0	0.5538	0.4806	0.1242	yes	N/A

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	129
cd07792	504	cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kin	4e-41
cd07769	484	cd07769, FGGY_GK, Glycerol kinases; a subfamily of	2e-30
TIGR01311	493	TIGR01311, glycerol_kin, glycerol kinase	3e-30
cd07795	496	cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisi	7e-28
PTZ00294	504	PTZ00294, PTZ00294, glycerol kinase-like protein;	2e-27
PRK00047	498	PRK00047, glpK, glycerol kinase; Provisional	1e-26
cd07786	486	cd07786, FGGY_EcGK_like, Escherichia coli glycerol	2e-26
COG0554	499	COG0554, GlpK, Glycerol kinase [Energy production	6e-26
PLN02295	512	PLN02295, PLN02295, glycerol kinase	3e-25
cd07796	503	cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and rel	4e-24
cd10427	487	cd10427, FGGY_GK_1, Uncharacterized subgroup; belo	3e-21
cd07789	495	cd07789, FGGY_CsGK_like, Cellulomonas sp	5e-21
pfam00370	245	pfam00370, FGGY_N, FGGY family of carbohydrate kin	1e-19
cd00366	435	cd00366, FGGY, FGGY family of carbohydrate kinases	8e-14
cd07791	484	cd07791, FGGY_GK2_bacteria, bacterial glycerol kin	1e-13
cd07793	504	cd07793, FGGY_GK5_metazoa, metazoan glycerol kinas	4e-12
COG1070	502	COG1070, XylB, Sugar (pentulose and hexulose) kina	8e-12
cd07794	470	cd07794, FGGY_GK_like_proteobact, Proteobacterial	6e-11
cd07779	488	cd07779, FGGY_ygcE_like, uncharacterized ygcE-like	2e-10
cd07808	482	cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xyl	7e-10
TIGR01312	481	TIGR01312, XylB, D-xylulose kinase	5e-09
cd07810	490	cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup	3e-07
cd07802	447	cd07802, FGGY_L-XK, L-xylulose kinases; a subfamil	3e-07
cd07805	514	cd07805, FGGY_XK_like_2, uncharacterized xylulose	4e-07
cd07804	492	cd07804, FGGY_XK_like_1, uncharacterized xylulose	5e-07
cd07803	482	cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup	5e-07
cd07770	440	cd07770, FGGY_GntK, Gluconate kinases; a subfamily	4e-06
cd07768	465	cd07768, FGGY_RBK_like, Ribulokinase-like carbohyd	7e-05
cd07783	484	cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase	5e-04
cd07781	498	cd07781, FGGY_RBK, Ribulokinases; belongs to the F	6e-04
PRK15027	484	PRK15027, PRK15027, xylulokinase; Provisional	0.004

>gnl|CDD|212664 cd07792, FGGY_GK1-3_metazoa, Metazoan glycerol kinase 1 and 3-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  142 bits (359), Expect = 4e-41
 Identities = 47/91 (51%), Positives = 62/91 (68%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++R L+ +A T E + SH ++I  I P+EGW EQDP EIL +V   +++  +KL    + 
Sbjct: 12  STRFLVFNAKTAELLSSHQVEIKQIFPKEGWVEQDPKEILNSVYECIEKTCKKLKELNID 71

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             DI  +GITNQRETTVVWD  TGEPLYNAI
Sbjct: 72  VSDIKAIGITNQRETTVVWDKYTGEPLYNAI 102

This subgroup corresponds to a group of metazoan glycerol kinases (GKs), coded by X chromosome-linked GK genes, and glycerol kinase (GK)-like proteins, coded by autosomal testis-specific GK-like genes (GK-like genes, GK1 and GK3). Sequence comparison shows that metazoan GKs and GK-like proteins in this family are closely related to the bacterial GKs, which catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). The metazoan GKs do have GK enzymatic activity. However, the GK-like metazoan proteins do not exhibit GK activity and their biological functions are not yet clear. Some of them lack important functional residues involved in the binding of ADP and Mg2+, which may result in the loss of GK catalytic function. Others that have conserved catalytic residues have lost their GK activity as well; the reason remains unclear. It has been suggested the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|198347 cd07769, FGGY_GK, Glycerol kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score =  113 bits (284), Expect = 2e-30
 Identities = 42/90 (46%), Positives = 54/90 (60%), Gaps = 4/90 (4%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
           +R +I      E V SH ++   I PQ GW E DP EI   V   ++ A++KL    +S 
Sbjct: 12  TRFIIFDR-DGEVVSSHQVEHEQIYPQPGWVEHDPEEIWANVVQCIEEALKKL---RISP 67

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           + I  +GITNQRETTV WD  TG+PLYNAI
Sbjct: 68  EQIKAIGITNQRETTVAWDKETGKPLYNAI 97

This subfamily includes glycerol kinases (GK; EC 2.7.1.30) and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Human GK deficiency, called hyperglycerolemia, is an X-linked recessive trait associated with psychomotor retardation, osteoporosis, spasticity, esotropia, and bone fractures. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of GKs is created only by a substrate-induced conformational change. Based on sequence similarity, some GK-like proteins from metazoa, which have lost their GK enzymatic activity, are also included in this CD. Members in this subfamily belong to the FGGY family of carbohydrate kinases. Length = 484

>gnl|CDD|233353 TIGR01311, glycerol_kin, glycerol kinase

 Score =  112 bits (282), Expect = 3e-30
 Identities = 42/91 (46%), Positives = 56/91 (61%), Gaps = 4/91 (4%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           +SR ++        V  H  + + I P+ GW E DPMEI ++V + +  A+ K    G+ 
Sbjct: 12  SSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAKA---GIK 67

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            DDI  +GITNQRETTVVWD  TG+PLYNAI
Sbjct: 68  PDDIAAIGITNQRETTVVWDKATGKPLYNAI 98

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases [Energy metabolism, Other]. Length = 493

>gnl|CDD|198367 cd07795, FGGY_ScGut1p_like, Saccharomyces cerevisiae Gut1p and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  105 bits (265), Expect = 7e-28
 Identities = 43/91 (47%), Positives = 56/91 (61%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   I+     + V SH ++ S I P  GW E DP EI+ +V   +  A++ L   G S
Sbjct: 12  TSTRFILFNRDGQPVASHQIEFSQIYPHPGWHEHDPEEIVSSVVQCIASALKSLETSGFS 71

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           + D+  +GITNQRETTVVWD  TG+PLYNAI
Sbjct: 72  KYDVKVIGITNQRETTVVWDRETGKPLYNAI 102

This subgroup corresponds to a small group of fungal glycerol kinases (GK), including Saccharomyces cerevisiae Gut1p/YHL032Cp, which phosphorylates glycerol to glycerol-3-phosphate in the cytosol. Glycerol utilization has been considered as the sole source of carbon and energy in S. cerevisiae, and is mediated by glycerol kinase and glycerol 3-phosphate dehydrogenase, which is encoded by the GUT2 gene. Members in this family show high similarity to their prokaryotic and eukaryotic homologs. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 496

>gnl|CDD|240348 PTZ00294, PTZ00294, glycerol kinase-like protein; Provisional

 Score =  105 bits (263), Expect = 2e-27
 Identities = 45/92 (48%), Positives = 52/92 (56%), Gaps = 1/92 (1%)

Query: 23  HTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
            TS   II       V SH +    I+P  GW E DP EIL+ V   M+ AI+KL   G 
Sbjct: 11  TTSTRFIIFDEKGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKKLREKGP 70

Query: 83  SRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           S   I  +GITNQRET V WD  TG+PLYNAI
Sbjct: 71  SFK-IKAIGITNQRETVVAWDKVTGKPLYNAI 101

Length = 504

>gnl|CDD|234594 PRK00047, glpK, glycerol kinase; Provisional

 Score =  102 bits (256), Expect = 1e-26
 Identities = 37/79 (46%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 36  EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
             V     + + I PQ GW E DP EI  +  + +  A   L+  G+S D I  +GITNQ
Sbjct: 27  NIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEA---LAKAGISPDQIAAIGITNQ 83

Query: 96  RETTVVWDLNTGEPLYNAI 114
           RETTVVWD  TG P+YNAI
Sbjct: 84  RETTVVWDKETGRPIYNAI 102

Length = 498

>gnl|CDD|198361 cd07786, FGGY_EcGK_like, Escherichia coli glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score =  101 bits (255), Expect = 2e-26
 Identities = 37/90 (41%), Positives = 49/90 (54%), Gaps = 4/90 (4%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
           SR ++        V     + + I P+ GW E DP EI ++       A+ K    G+  
Sbjct: 12  SRAILFDH-DGNIVAVAQREFTQIYPKPGWVEHDPEEIWESQLAVAREALAK---AGIRA 67

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            DI  +GITNQRETTVVWD  TG+P+YNAI
Sbjct: 68  SDIAAIGITNQRETTVVWDRETGKPVYNAI 97

This subgroup is composed of mostly bacterial and archaeal glycerol kinases (GK), including the well characterized proteins from Escherichia coli (EcGK), Thermococcus kodakaraensis (TkGK), and Enterococcus casseliflavus (EnGK). GKs contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The high affinity ATP binding site of EcGK is created only by a substrate-induced conformational change, which is initiated by protein-protein interactions through complex formation with enzyme IIAGlc (also known as IIIGlc), the glucose-specific phosphocarrier protein of the phosphotransferase system (PTS). EcGK exists in a dimer-tetramer equilibrium. IIAGlc binds to both EcGK dimer and tetramer, and inhibits the uptake and subsequent metabolism of glycerol and maltose. Another well-known allosteric regulator of EcGK is fructose 1,6-bisphosphate (FBP), which binds to the EcGK tetramer and plays an essential role in the stabilization of the inactive tetrameric form. EcGK requires Mg2+ for its enzymatic activity. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 486

>gnl|CDD|223628 COG0554, GlpK, Glycerol kinase [Energy production and conversion]

 Score =  100 bits (251), Expect = 6e-26
 Identities = 38/91 (41%), Positives = 54/91 (59%), Gaps = 4/91 (4%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           +SR ++        V     + + I PQ GW E DP+EI  +V++ +  A+ K    G+ 
Sbjct: 16  SSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAKA---GIK 71

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +I  +GITNQRETTVVWD  TG+P+YNAI
Sbjct: 72  PGEIAAIGITNQRETTVVWDKETGKPIYNAI 102

Length = 499

>gnl|CDD|215166 PLN02295, PLN02295, glycerol kinase

 Score = 98.6 bits (246), Expect = 3e-25
 Identities = 42/78 (53%), Positives = 55/78 (70%), Gaps = 1/78 (1%)

Query: 38  VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTLGITNQR 96
           V SH ++ + I PQ GW E DPMEIL++V T + +A+EK +A G + D  +  +GITNQR
Sbjct: 24  VASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEKAAAKGHNVDSGLKAIGITNQR 83

Query: 97  ETTVVWDLNTGEPLYNAI 114
           ETTV W  +TG PLYNAI
Sbjct: 84  ETTVAWSKSTGRPLYNAI 101

Length = 512

>gnl|CDD|198368 cd07796, FGGY_NHO1_plant, Arabidopsis NHO1 and related proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 95.4 bits (237), Expect = 4e-24
 Identities = 47/92 (51%), Positives = 58/92 (63%), Gaps = 1/92 (1%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     + V SH ++ + I PQ GW E DPMEIL+ V+  M+ A+ K  A GL 
Sbjct: 10  TSTRFIIYDTAAKVVASHQVEFTQIYPQAGWVEHDPMEILETVKKCMEGALAKAKAKGLD 69

Query: 84  RDD-IVTLGITNQRETTVVWDLNTGEPLYNAI 114
             D +  +GITNQRETTVVW  +TG PLYNAI
Sbjct: 70  VLDGLKAIGITNQRETTVVWSRSTGLPLYNAI 101

This subgroup includes Arabidopsis NHO1 (also known as NONHOST1, or noh-host resistant 1) and other putative plant glycerol kinases, which share strong homology with glycerol kinases from bacteria, fungi, and animals. Nonhost resistance of plants refers to the phenomenon observed when all members of a plant species are typically resistant to a specific parasite. NHO1 is required for nonspecific resistance to nonhost Pseudomonas bacteria, it is also required for resistance to the fungal pathogen Botrytis cinerea. This subgroup belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 503

>gnl|CDD|198378 cd10427, FGGY_GK_1, Uncharacterized subgroup; belongs to the glycerol kinases subfamily of the FGGY family of carbohydrate kinases

 Score = 87.4 bits (217), Expect = 3e-21
 Identities = 33/67 (49%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
           I P+ GW E DP EI +     +   +E+    G+   +I  LGITNQRETTV WD  TG
Sbjct: 34  IYPENGWVEHDPEEIYENTLQAVKDLLEE---FGIDPAEIEGLGITNQRETTVAWDKRTG 90

Query: 108 EPLYNAI 114
           +PLYNAI
Sbjct: 91  KPLYNAI 97

This subgroup contains uncharacterized bacterial proteins belonging to the glycerol kinase subfamily of the FGGY family of carbohydrate kinases. The glycerol kinase subfamily includes glycerol kinases (GK; EC 2.7.1.30), and glycerol kinase-like proteins from all three kingdoms of living organisms. Glycerol is an important intermediate of energy metabolism and it plays fundamental roles in several vital physiological processes. GKs are involved in the entry of external glycerol into cellular metabolism. They catalyze the rate-limiting step in glycerol metabolism by transferring a phosphate from ATP to glycerol thus producing glycerol 3-phosphate (G3P) in the cytoplasm. Under different conditions, GKs from different species may exist in different oligomeric states. The monomer of GKs is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 487

>gnl|CDD|198362 cd07789, FGGY_CsGK_like, Cellulomonas sp

 Score = 86.7 bits (215), Expect = 5e-21
 Identities = 39/91 (42%), Positives = 50/91 (54%), Gaps = 3/91 (3%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   I+       V     +   I P+ GW E DP EI +  +  +  A   L+  GL+
Sbjct: 10  TSTRCIVFDHHGRIVSVAQKEHRQIFPRPGWVEHDPEEIWENTRRVISGA---LAKAGLT 66

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            +DI  +GITNQRETTVVWD  TG P+YNAI
Sbjct: 67  PEDIAAVGITNQRETTVVWDRATGRPVYNAI 97

glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases. This subgroup corresponds to a small group of bacterial glycerol kinases (GK) with similarity to Cellulomonas sp. glycerol kinase (CsGK). CsGK might exist as a dimer. Its monomer is composed of two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The regulation of the catalytic activity of this group has not yet been examined. Members in this subgroup belong to the FGGY family of carbohydrate kinases. Length = 495

>gnl|CDD|215880 pfam00370, FGGY_N, FGGY family of carbohydrate kinases, N-terminal domain

 Score = 80.8 bits (200), Expect = 1e-19
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 7/91 (7%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK-LSAHGLS 83
           ++ ++ +    + V S S   + ISP+ GWAEQDP EI QA+     +AI K L   G+S
Sbjct: 12  TKAIVFNK-QGKVVASASAPYALISPKPGWAEQDPEEIWQALA----QAIRKILQQSGIS 66

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              I  +GI+ Q    V+ D N  +PLY AI
Sbjct: 67  PKQIKGIGISGQGHGLVLLDKN-DKPLYPAI 96

This domain adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain. Length = 245

>gnl|CDD|212658 cd00366, FGGY, FGGY family of carbohydrate kinases

 Score = 66.2 bits (162), Expect = 8e-14
 Identities = 25/75 (33%), Positives = 36/75 (48%), Gaps = 6/75 (8%)

Query: 40  SHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETT 99
             S +     P+ GW EQDP EI QA+   +  A  + S        I  +G+++Q E  
Sbjct: 26  EASREYEVSYPKPGWVEQDPEEIWQALCEVLREAAAQASGG-----QIAAIGVSSQGEGV 80

Query: 100 VVWDLNTGEPLYNAI 114
           ++ D N G PL  AI
Sbjct: 81  ILVDAN-GRPLTPAI 94

This family is predominantly composed of glycerol kinase (GK) and similar carbohydrate kinases including rhamnulokinase (RhuK), xylulokinase (XK), gluconokinase (GntK), ribulokinase (RBK), and fuculokinase (FK). These enzymes catalyze the transfer of a phosphate group, usually from ATP, to their carbohydrate substrates. The monomer of FGGY proteins contains two large domains, which are separated by a deep cleft that forms the active site. One domain is primarily involved in sugar substrate binding, and the other is mainly responsible for ATP binding. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Substrate-induced conformational changes and a divalent cation may be required for the catalytic activity. Length = 435

>gnl|CDD|198363 cd07791, FGGY_GK2_bacteria, bacterial glycerol kinase 2-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 65.5 bits (160), Expect = 1e-13
 Identities = 30/73 (41%), Positives = 39/73 (53%), Gaps = 5/73 (6%)

Query: 38  VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 97
           V S S  +    PQ GW EQD   I  AVQ    +AI    A G+   ++  + I+NQRE
Sbjct: 24  VASGSAPVGIQYPQPGWVEQDAEAIWAAVQ----QAIADCLA-GVLAAEVAAIAISNQRE 78

Query: 98  TTVVWDLNTGEPL 110
           + V+WD  TG PL
Sbjct: 79  SVVIWDRQTGAPL 91

This subgroup corresponds to a group of putative bacterial glycerol kinases (GK), which may be coded by the GK-like gene, GK2. Sequence comparison shows members in this CD are homologs of Escherichia coli GK. They retain all functionally important residues, and may catalyze the Mg-ATP dependent phosphorylation of glycerol to yield glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|212665 cd07793, FGGY_GK5_metazoa, metazoan glycerol kinase 5-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 61.6 bits (150), Expect = 4e-12
 Identities = 26/81 (32%), Positives = 43/81 (53%), Gaps = 4/81 (4%)

Query: 35  QEEVVSHSMD-ISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93
           Q EVV  S D I  + P+ G+ E DP ++   +   +  A++      L+   I  LGI+
Sbjct: 20  QAEVVGSSYDKIELLYPEPGYVEIDPDKLWTQIVGVIKEAVKD---ANLTAKQIAGLGIS 76

Query: 94  NQRETTVVWDLNTGEPLYNAI 114
            QR + + W+ +TG+P +N I
Sbjct: 77  TQRGSFLTWNKSTGKPYHNFI 97

This subgroup corresponds to a group of metazoan putative glycerol kinases (GK), which may be coded by the GK-like gene, GK5. Sequence comparison shows members of this group are homologs of bacterial GKs, and they retain all functionally important residues. However, GK-like proteins in this family do not have detectable GK activity. The reason remains unclear. It has been suggested tha the conserved catalytic residues might facilitate them performing a distinct function. GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 504

>gnl|CDD|223996 COG1070, XylB, Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

 Score = 60.5 bits (147), Expect = 8e-12
 Identities = 29/89 (32%), Positives = 45/89 (50%), Gaps = 4/89 (4%)

Query: 26  RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 85
           + ++      E V +   +    +PQ GWAEQDP E+ QA+   + + +E+     +  D
Sbjct: 17  KAVLFDEDGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPD 73

Query: 86  DIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            I  +GI+ Q    V+ D N GEPL  AI
Sbjct: 74  AIAAIGISGQGHGLVLLDAN-GEPLRPAI 101

Length = 502

>gnl|CDD|198366 cd07794, FGGY_GK_like_proteobact, Proteobacterial glycerol kinase-like proteins; belongs to the FGGY family of carbohydrate kinases

 Score = 57.9 bits (140), Expect = 6e-11
 Identities = 25/91 (27%), Positives = 43/91 (47%), Gaps = 12/91 (13%)

Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           ++RVL+     +  ++  ++      P  GW E DP+E+L  ++         L A G  
Sbjct: 12  STRVLVAGEDGKAFIL-LALRHKQHYPNPGWVEHDPLELLANLRAC-------LEAAG-- 61

Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              +  +G+ NQ E+ + WD  +GEPL   I
Sbjct: 62  --VVDAIGLANQGESCLAWDARSGEPLSPVI 90

This subgroup corresponds to a small group of proteobacterial glycerol kinase (GK)-like proteins, including the glycerol kinase from Pseudomonas aeruginosa. Most bacteria, such as Escherichia coli, take up glycerol passively by facilitated diffusion. In contrast, P. aeruginosa may also utilize a binding protein-dependent active transport system to mediate glycerol transportation. The glycerol kinase subsequently phosphorylates the intracellular glycerol to glycerol 3-phosphate (G3P). GKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 470

>gnl|CDD|212662 cd07779, FGGY_ygcE_like, uncharacterized ygcE-like proteins

 Score = 56.9 bits (138), Expect = 2e-10
 Identities = 25/66 (37%), Positives = 34/66 (51%), Gaps = 4/66 (6%)

Query: 49  SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGE 108
           SP+ GWAEQDP    QA+        E+     +    I  + +T QRET V+ D + G+
Sbjct: 36  SPKPGWAEQDPDYYWQALCEACRELWEQ---IPVDPGRIAGVALTTQRETFVLLDKD-GK 91

Query: 109 PLYNAI 114
           PL  AI
Sbjct: 92  PLRPAI 97

This subfamily consists of uncharacterized hypothetical bacterial proteins with similarity to Escherichia coli sugar kinase ygcE , whose functional roles are not yet clear. Escherichia coli ygcE is recognized by this model, but is not present in the alignment as it contains a deletion relative to other members of the group. These proteins belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 488

>gnl|CDD|198374 cd07808, FGGY_D-XK_EcXK-like, Escherichia coli xylulokinase-like D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 54.8 bits (133), Expect = 7e-10
 Identities = 26/94 (27%), Positives = 46/94 (48%), Gaps = 9/94 (9%)

Query: 24  TS--RVLIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH 80
           TS  + L++      EVV S S +     P+ GW+EQDP +  +A +  +   + K    
Sbjct: 9   TSGVKALLVDE--DGEVVASASAEYPLSQPKPGWSEQDPEDWWEATKAAIRELLAK---S 63

Query: 81  GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
           G++  ++  +G++ Q    V+ D   G+ L  AI
Sbjct: 64  GIAGGEVRGIGLSGQMHGLVLLD-KDGKVLRPAI 96

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. D-xylulose has been used as a source of carbon and energy by a variety of microorganisms. Some uncharacterized sequences are also included in this subgroup. The prototypical member of this CD is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|233354 TIGR01312, XylB, D-xylulose kinase

 Score = 52.7 bits (127), Expect = 5e-09
 Identities = 30/90 (33%), Positives = 43/90 (47%), Gaps = 7/90 (7%)

Query: 26  RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSA-HGLSR 84
           + L++     E + S S   + ISP  GW+EQDP +   A     + AI++L        
Sbjct: 11  KALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDAT----EEAIKELLEQASEMG 65

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            DI  +GI+ Q    V+ D N GE L  AI
Sbjct: 66  QDIKGIGISGQMHGLVLLDAN-GEVLRPAI 94

This model describes D-xylulose kinases, a subfamily of the FGGY family of carbohydrate kinases. The member from Klebsiella pneumoniae, designated DalK (see PMID:9324246), was annotated erroneously in GenBank as D-arabinitol kinase but is authentic D-xylulose kinase. D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization [Energy metabolism, Sugars]. Length = 481

>gnl|CDD|198376 cd07810, FGGY_D-XK_2, D-xylulose kinases, subgroup 2; members of the FGGY family of carbohydrate kinases

 Score = 47.4 bits (113), Expect = 3e-07
 Identities = 27/94 (28%), Positives = 40/94 (42%), Gaps = 11/94 (11%)

Query: 26  RVLIISALTQEEVVSHS-----MDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH 80
           +  ++ A T + + S S     M+I  +SPQ GWAEQDP            + I +    
Sbjct: 13  KAALVDAETGKSLASVSYPEQEMEI--LSPQPGWAEQDPEIWWDYTCAATKQLINQGKED 70

Query: 81  GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
                +I  +GI+ Q    V+ D   G  L  AI
Sbjct: 71  L---SNIQAIGISYQMHGLVLVDKQ-GNVLRPAI 100

This subgroup is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17). They share high sequence similarity with Escherichia coli xylulokinase (EcXK), which catalyzes the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. EcXK exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. The presence of Mg2+ or Mn2+ might be required for catalytic activity. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 490

>gnl|CDD|212666 cd07802, FGGY_L-XK, L-xylulose kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 47.2 bits (113), Expect = 3e-07
 Identities = 24/79 (30%), Positives = 40/79 (50%), Gaps = 4/79 (5%)

Query: 36  EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
            E+   S    T++PQ G+ EQD  E+ +AV   +   +EK    G+  +DI  +G+T Q
Sbjct: 22  REIAVASRRNPTLTPQPGYVEQDMDELWEAVAAVIRELLEKA---GVDAEDIAGIGVTGQ 78

Query: 96  RETTVVWDLNTGEPLYNAI 114
            +   + D   G+P+   I
Sbjct: 79  GDGLWLVD-KEGKPVGPGI 96

This subfamily is composed of bacterial L-xylulose kinases (L-XK, also known as L-xylulokinase; EC 2.7.1.53), which catalyze the ATP-dependent phosphorylation of L-xylulose to produce L-xylulose 5-phosphate and ADP. The presence of Mg2+ might be required for catalytic activity. Some uncharacterized sequences are also included in this subfamily. L-XKs belong to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 447

>gnl|CDD|198373 cd07805, FGGY_XK_like_2, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 47.2 bits (113), Expect = 4e-07
 Identities = 19/65 (29%), Positives = 27/65 (41%), Gaps = 4/65 (6%)

Query: 50  PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 109
              G AEQDP +   AV     R +E     G++   +  +  + Q +  V  D   G P
Sbjct: 36  LPGGGAEQDPEDWWDAVVRATRRLLED---SGVNPRRVAGISFSGQMQGVVPVD-EDGRP 91

Query: 110 LYNAI 114
           L  AI
Sbjct: 92  LRPAI 96

This subgroup is composed of uncharacterized proteins with similarity to bacterial D-Xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 514

>gnl|CDD|198372 cd07804, FGGY_XK_like_1, uncharacterized xylulose kinase-like proteins; a subgroup of the FGGY family of carbohydrate kinases

 Score = 46.4 bits (111), Expect = 5e-07
 Identities = 24/80 (30%), Positives = 34/80 (42%), Gaps = 4/80 (5%)

Query: 38  VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRE 97
           +   S +    +PQ GWAEQDP     AV   +   + K         +I  +G++ Q  
Sbjct: 24  LAQASREYELSTPQPGWAEQDPEVWWDAVCEIIRELVAKAGVDP---SEIKAIGVSGQGP 80

Query: 98  TTVVWDLNTGEPLYNAIEQG 117
           T V  D + G PL  AI   
Sbjct: 81  TVVPVDKD-GRPLRPAIIYM 99

This subgroup is composed of uncharacterized bacterial and archaeal xylulose kinases-like proteins with similarity to bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. The presence of Mg2+ or Mn2+ is required for catalytic activity. D-XK exists as a dimer with an active site that lies at the interface between the N- and C-terminal domains. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subgroup belong to the FGGY family of carbohydrate kinases. Length = 492

>gnl|CDD|198371 cd07803, FGGY_D-XK, D-xylulose kinases; a subgroup of the FGGY family of carbohydrate kinases

 Score = 46.6 bits (111), Expect = 5e-07
 Identities = 30/82 (36%), Positives = 40/82 (48%), Gaps = 4/82 (4%)

Query: 33  LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI 92
           L  E V   S + +T SP  GW+EQDP +   AVQ  ++     L   G S +DI  +G+
Sbjct: 19  LDGELVAFASREYTTSSPHPGWSEQDPADWWDAVQRALEAL---LDQAGDSAEDIAAIGV 75

Query: 93  TNQRETTVVWDLNTGEPLYNAI 114
           T Q    V+ D   G  L  AI
Sbjct: 76  TGQMHGAVLLD-QQGRVLRPAI 96

This subfamily is predominantly composed of bacterial D-xylulose kinases (XK, also known as xylulokinase; EC 2.7.1.17), which catalyze the rate-limiting step in the ATP-dependent phosphorylation of D-xylulose to produce D-xylulose 5-phosphate (X5P) and ADP. Some uncharacterized sequences are also included in this subfamily. The prototypical member of this subfamily is Escherichia coli xylulokinase (EcXK), which exists as a dimer. Each monomer consists of two large domains separated by an open cleft that forms an active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. XKs do not have any known allosteric regulators, and they may have weak but significant activity in the absence of substrate. The presence of Mg2+ or Mn2+ is required for catalytic activity. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 482

>gnl|CDD|212659 cd07770, FGGY_GntK, Gluconate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 44.1 bits (105), Expect = 4e-06
 Identities = 22/79 (27%), Positives = 32/79 (40%), Gaps = 6/79 (7%)

Query: 36  EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
             V   S      +P +G AEQDP EI  AV   +D  + K          I  +  ++ 
Sbjct: 22  RIVAGVSKRYPLETPPDGAAEQDPDEIFDAVLEILDEVVAKALG-----GRIAAVSFSSA 76

Query: 96  RETTVVWDLNTGEPLYNAI 114
             + +  D + GEPL   I
Sbjct: 77  MHSLIALDED-GEPLTPVI 94

This subfamily is composed of a group of gluconate kinases (GntK, also known as gluconokinase; EC 2.7.1.12) encoded by the gntK gene, which catalyzes the ATP-dependent phosphorylation of D-gluconate and produce 6-phospho-D-gluconate and ADP. The presence of Mg2+ might be required for catalytic activity. The prototypical member of this subfamily is GntK from Lactobacillus acidophilus. Unlike Escherichia coli GntK, which belongs to the superfamily of P-loop containing nucleoside triphosphate hydrolases, members in this subfamily are homologous to glycerol kinase, xylulose kinase, and rhamnulokinase from Escherichia coli. They have been classified as members of the FGGY family of carbohydrate kinases, which contain two large domains separated by a deep cleft that forms the active site. This model spans both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Some uncharacterized homologous sequences are also included in this subfamily. The Lactobacillus gnt operon contains a single gntK gene. The gnt operons of some bacteria, such as Corynebacterium glutamicum, have two gntK genes. For example, the C. glutamicum gnt operon has both a gluconate kinase gntV gene (also known as gntK) and a second hypothetical gntK gene (also known as gntK2). Both gluconate kinases encoded by these genes belong to this family, however the protein encoded by C. glutamicum gntV is not included in this model as it is truncated in the C-terminal domain. Length = 440

>gnl|CDD|198346 cd07768, FGGY_RBK_like, Ribulokinase-like carbohydrate kinases; a subfamily of the FGGY family of carbohydrate kinases

 Score = 40.6 bits (95), Expect = 7e-05
 Identities = 28/83 (33%), Positives = 39/83 (46%), Gaps = 5/83 (6%)

Query: 33  LTQEEVVSHSMDISTISPQE-GWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG 91
           L   E+ S S       P   GWAEQDP +   AV+T +  A+   +A G+  D +  LG
Sbjct: 20  LNGRELASASRPYPVPVPYGAGWAEQDPEDWWPAVRTAVRAAV---AAAGVDPDQVAALG 76

Query: 92  ITNQRETTVVWDLNTGEPLYNAI 114
           +     T V  D   G+PL  A+
Sbjct: 77  VDATSCTVVPLDAE-GQPLTPAL 98

This subfamily is composed of ribulokinases (RBKs) and similar proteins from bacteria and eukaryota. RBKs catalyze the MgATP-dependent phosphorylation of a variety of sugar substrates including L- and/or D-ribulose. Members of this subfamily contain two large domains separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Members of this subfamily belong to the FGGY family of carbohydrate kinases. Length = 465

>gnl|CDD|198360 cd07783, FGGY_CarbK-RPE_like, Carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins-like; belongs to the FGGY family of carbohydrate kinases

 Score = 38.1 bits (89), Expect = 5e-04
 Identities = 22/68 (32%), Positives = 32/68 (47%), Gaps = 4/68 (5%)

Query: 47  TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNT 106
           T  P+ GWAEQ+P +  +A+   +  A   L+  G++  D+  L       T V  D   
Sbjct: 34  TTHPRPGWAEQNPEDWWEALGAAVREA---LAEAGIAAPDVAALCCDTTCCTVVALDAA- 89

Query: 107 GEPLYNAI 114
           G PL  AI
Sbjct: 90  GTPLRPAI 97

This subgroup is composed of uncharacterized proteins with similarity to carbohydrate kinases. Some members are carbohydrate kinase and ribulose-phosphate 3-epimerase fusion proteins. Carbohydrate kinases catalyze the ATP-dependent phosphorylation of their carbohydrate substrate to produce phosphorylated sugar and ADP. The presence of Mg2+ is required for catalytic activity. This subgroup shows high homology to characterized ribulokinases and belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 484

>gnl|CDD|198358 cd07781, FGGY_RBK, Ribulokinases; belongs to the FGGY family of carbohydrate kinases

 Score = 38.0 bits (89), Expect = 6e-04
 Identities = 15/74 (20%), Positives = 31/74 (41%), Gaps = 10/74 (13%)

Query: 26 RVLIISALTQEEVVSH-------SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLS 78
          R L++   T  E+ S         M           A Q P + ++ ++T +   +++  
Sbjct: 14 RALLVDTETGAELASAVVEYPHGVMGEYLPDLPPNQALQHPADYIEGLETAIPEVLKEA- 72

Query: 79 AHGLSRDDIVTLGI 92
            G+  DD+V +G+
Sbjct: 73 --GVDPDDVVGIGV 84

This subgroup is predominantly composed of bacterial ribulokinases (RBK) which catalyze the MgATP-dependent phosphorylation of L(or D)-ribulose to produce L(or D)-ribulose 5-phosphate and ADP. RBK also phosphorylates a variety of other sugar substrates including ribitol and arabitol. The reason why L-RBK can phosphorylate so many different substrates is not yet clear. The presence of Mg2+ is required for catalytic activity. This group belongs to the FGGY family of carbohydrate kinases, the monomers of which contain two large domains, which are separated by a deep cleft that forms the active site. This model includes both the N-terminal domain, which adopts a ribonuclease H-like fold, and the structurally related C-terminal domain. Length = 498

>gnl|CDD|184987 PRK15027, PRK15027, xylulokinase; Provisional

 Score = 35.7 bits (82), Expect = 0.004
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 6/81 (7%)

Query: 24  TSRVLIISALTQEEVV-SHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL 82
           TS V +I    Q EVV S +  ++   P   W+EQDP +  QA     DRA++ L     
Sbjct: 9   TSGVKVILLNEQGEVVASQTEKLTVSRPHPLWSEQDPEQWWQAT----DRAMKALGDQH- 63

Query: 83  SRDDIVTLGITNQRETTVVWD 103
           S  D+  LGI  Q     + D
Sbjct: 64  SLQDVKALGIAGQMHGATLLD 84

Length = 484

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	129
COG0554	499	GlpK Glycerol kinase [Energy production and conver	99.95
PF00370	245	FGGY_N: FGGY family of carbohydrate kinases, N-ter	99.94
PRK00047	498	glpK glycerol kinase; Provisional	99.94
PLN02295	512	glycerol kinase	99.93
COG1070	502	XylB Sugar (pentulose and hexulose) kinases [Carbo	99.93
PTZ00294	504	glycerol kinase-like protein; Provisional	99.93
PRK04123	548	ribulokinase; Provisional	99.92
PRK10331	470	L-fuculokinase; Provisional	99.91
PRK15027	484	xylulokinase; Provisional	99.91
TIGR01311	493	glycerol_kin glycerol kinase. This model describes	99.91
TIGR01234	536	L-ribulokinase L-ribulokinase. This enzyme catalyz	99.91
TIGR02628	465	fuculo_kin_coli L-fuculokinase. Members of this fa	99.91
TIGR01315	541	5C_CHO_kinase FGGY-family pentulose kinase. This m	99.9
TIGR01314	505	gntK_FGGY gluconate kinase, FGGY type. Gluconate i	99.9
PRK10939	520	autoinducer-2 (AI-2) kinase; Provisional	99.9
PLN02669	556	xylulokinase	99.87
KOG2517|consensus	516		99.85
TIGR01312	481	XylB D-xylulose kinase. D-xylulose kinase (XylB) g	99.84
TIGR02627	454	rhamnulo_kin rhamnulokinase. This model describes	99.82
COG1069	544	AraB Ribulose kinase [Energy production and conver	99.8
PRK10640	471	rhaB rhamnulokinase; Provisional	99.31
TIGR00241	248	CoA_E_activ CoA-substrate-specific enzyme activase	99.1
PRK09698	302	D-allose kinase; Provisional	99.01
PRK13311	256	N-acetyl-D-glucosamine kinase; Provisional	98.99
TIGR00744	318	ROK_glcA_fam ROK family protein (putative glucokin	98.98
PRK13310	303	N-acetyl-D-glucosamine kinase; Provisional	98.91
PRK09557	301	fructokinase; Reviewed	98.9
KOG2531|consensus	545		98.89
COG1940	314	NagC Transcriptional regulator/sugar kinase [Trans	98.89
PF00480	179	ROK: ROK family; InterPro: IPR000600 A family of b	98.81
PRK12408	336	glucokinase; Provisional	98.68
PRK05082	291	N-acetylmannosamine kinase; Provisional	98.53
COG2971	301	Predicted N-acetylglucosamine kinase [Carbohydrate	98.53
PRK00292	316	glk glucokinase; Provisional	98.52
smart00732	99	YqgFc Likely ribonuclease with RNase H fold. YqgF	98.44
PF01869	271	BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; In	98.3
PRK14101	638	bifunctional glucokinase/RpiR family transcription	98.26
TIGR02261	262	benz_CoA_red_D benzoyl-CoA reductase, bcr type, su	98.25
TIGR03192	293	benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q s	98.25
TIGR03286	404	methan_mark_15 putative methanogenesis marker prot	98.17
PF05378	176	Hydant_A_N: Hydantoinase/oxoprolinase N-terminal r	98.01
PRK13321	256	pantothenate kinase; Reviewed	98.0
COG1924	396	Activator of 2-hydroxyglutaryl-CoA dehydratase (HS	97.96
PRK13318	258	pantothenate kinase; Reviewed	97.95
PF14574	412	DUF4445: Domain of unknown function (DUF4445); PDB	97.88
PF00349	206	Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexo	97.77
TIGR02259	432	benz_CoA_red_A benzoyl-CoA reductase, bcr type, su	97.55
KOG1794|consensus	336		97.43
PLN02914	490	hexokinase	97.37
smart00842	187	FtsA Cell division protein FtsA. FtsA is essential	97.33
TIGR00749	316	glk glucokinase, proteobacterial type. This model	97.32
PRK09472	420	ftsA cell division protein FtsA; Reviewed	97.28
PLN02405	497	hexokinase	97.24
PLN02596	490	hexokinase-like	97.23
TIGR02707	351	butyr_kinase butyrate kinase. This model represent	97.09
PTZ00288	405	glucokinase 1; Provisional	97.09
TIGR01174	371	ftsA cell division protein FtsA. This bacterial ce	97.02
PRK15080	267	ethanolamine utilization protein EutJ; Provisional	97.01
PLN02362	509	hexokinase	96.98
PTZ00107	464	hexokinase; Provisional	96.94
PF13941	457	MutL: MutL protein	96.86
PRK13317	277	pantothenate kinase; Provisional	96.8
PRK13324	258	pantothenate kinase; Reviewed	96.29
COG0849	418	ftsA Cell division ATPase FtsA [Cell division and	96.27
TIGR03123	318	one_C_unchar_1 probable H4MPT-linked C1 transfer p	95.85
PF02685	316	Glucokinase: Glucokinase; InterPro: IPR003836 Gluc	95.65
TIGR00555	279	panK_eukar pantothenate kinase, eukaryotic/staphyl	95.65
PRK09604	332	UGMP family protein; Validated	95.63
PTZ00340	345	O-sialoglycoprotein endopeptidase-like protein; Pr	95.58
PRK03011	358	butyrate kinase; Provisional	95.51
COG5026	466	Hexokinase [Carbohydrate transport and metabolism]	95.45
TIGR01175	348	pilM type IV pilus assembly protein PilM. This pro	95.39
KOG1369|consensus	474		95.38
PLN02666	1275	5-oxoprolinase	95.35
PRK13320	244	pantothenate kinase; Reviewed	95.26
COG4820	277	EutJ Ethanolamine utilization protein, possible ch	95.05
PRK13331	251	pantothenate kinase; Reviewed	95.04
TIGR02529	239	EutJ ethanolamine utilization protein EutJ family	95.01
PRK13326	262	pantothenate kinase; Reviewed	94.77
PRK09605	535	bifunctional UGMP family protein/serine/threonine	94.76
TIGR03725	202	bact_YeaZ universal bacterial protein YeaZ. This f	94.6
PF11104	340	PilM_2: Type IV pilus assembly protein PilM;; PDB:	94.59
COG1214	220	Inactive homolog of metal-dependent proteases, put	94.43
TIGR00329	305	gcp_kae1 metallohydrolase, glycoprotease/Kae1 fami	94.38
TIGR03723	314	bact_gcp putative glycoprotease GCP. This model re	94.33
TIGR01319	463	glmL_fam conserved hypothetical protein. This smal	94.32
PRK10854	513	exopolyphosphatase; Provisional	94.32
TIGR00671	243	baf pantothenate kinase, type III. This model desc	94.1
COG0145	674	HyuA N-methylhydantoinase A/acetone carboxylase, b	94.04
COG4972	354	PilM Tfp pilus assembly protein, ATPase PilM [Cell	93.61
COG3734	306	DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate	93.5
TIGR03706	300	exo_poly_only exopolyphosphatase. It appears that	93.14
TIGR03722	322	arch_KAE1 universal archaeal protein Kae1. This fa	93.09
COG0837	320	Glk Glucokinase [Carbohydrate transport and metabo	93.01
PF14450	120	FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B	92.84
COG3894	614	Uncharacterized metal-binding protein [General fun	92.61
PRK14878	323	UGMP family protein; Provisional	92.21
PF03309	206	Pan_kinase: Type III pantothenate kinase; InterPro	92.02
COG0248	492	GppA Exopolyphosphatase [Nucleotide transport and	91.96
COG1521	251	Pantothenate kinase type III (Bvg accessory factor	91.9
COG1548	330	Predicted transcriptional regulator/sugar kinase [	91.76
COG0533	342	QRI7 Metal-dependent proteases with possible chape	91.6
PF00871	388	Acetate_kinase: Acetokinase family; InterPro: IPR0	91.59
PF01548	144	DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 T	91.45
PRK11031	496	guanosine pentaphosphate phosphohydrolase; Provisi	90.81
CHL00094	621	dnaK heat shock protein 70	90.36
COG4020	332	Uncharacterized protein conserved in archaea [Func	89.8
PF14639	150	YqgF: Holliday-junction resolvase-like of SPT6 ; P	89.7
PRK13410	668	molecular chaperone DnaK; Provisional	89.69
PRK13411	653	molecular chaperone DnaK; Provisional	89.68
PF02075	149	RuvC: Crossover junction endodeoxyribonuclease Ruv	89.13
PRK00290	627	dnaK molecular chaperone DnaK; Provisional	88.92
PF07318	343	DUF1464: Protein of unknown function (DUF1464); In	88.66
PRK00039	164	ruvC Holliday junction resolvase; Reviewed	88.65
PRK07058	396	acetate kinase; Provisional	88.47
TIGR02350	595	prok_dnaK chaperone protein DnaK. Members of this	88.19
PF04312	138	DUF460: Protein of unknown function (DUF460); Inte	88.09
PF03652	135	UPF0081: Uncharacterised protein family (UPF0081);	88.01
PTZ00009	653	heat shock 70 kDa protein; Provisional	87.88
PTZ00186	657	heat shock 70 kDa precursor protein; Provisional	87.58
PRK12440	397	acetate kinase; Reviewed	87.33
PF00012	602	HSP70: Hsp70 protein; InterPro: IPR013126 Heat sho	86.89
KOG2707|consensus	405		86.81
PRK00976	326	hypothetical protein; Provisional	86.74
PRK05183	616	hscA chaperone protein HscA; Provisional	86.59
COG0443	579	DnaK Molecular chaperone [Posttranslational modifi	86.44
PF06277	473	EutA: Ethanolamine utilisation protein EutA; Inter	85.83
COG2183	780	Tex Transcriptional accessory protein [Transcripti	84.64
PTZ00400	663	DnaK-type molecular chaperone; Provisional	84.24
PF07736	118	CM_1: Chorismate mutase type I; InterPro: IPR00824	84.23
PRK13322	246	pantothenate kinase; Reviewed	83.57
cd00529	154	RuvC_resolvase Holliday junction resolvases (HJRs)	83.44
TIGR00016	404	ackA acetate kinase. Acetate kinase is involved in	83.28
PRK01433	595	hscA chaperone protein HscA; Provisional	83.19
PLN03184	673	chloroplast Hsp70; Provisional	83.08
PF05035	287	DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IP	82.07
cd02185	117	AroH Chorismate mutase (AroH) is one of at least f	81.89
TIGR01796	117	CM_mono_aroH monofunctional chorismate mutase, gra	81.4
PRK11678	450	putative chaperone; Provisional	81.36
PRK10719	475	eutA reactivating factor for ethanolamine ammonia	81.0
PRK00109	138	Holliday junction resolvase-like protein; Reviewed	81.0
TIGR01991	599	HscA Fe-S protein assembly chaperone HscA. The Hea	80.8
PRK07157	400	acetate kinase; Provisional	80.4

>COG0554 GlpK Glycerol kinase [Energy production and conversion]

Probab=99.95  E-value=5.5e-28  Score=188.00  Aligned_cols=113  Identities=35%  Similarity=0.564  Sum_probs=108.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++|+++||.|||++|+++||. +|++++..+.++...+|++||+|+||+++|..+..++++++.+   +++.+.+|.+||
T Consensus         4 ~~yIlAiDqGTTssRaivfd~-~g~iva~~q~e~~Q~yP~~GWVEhDp~eIw~~~~~~l~~a~~~---~~i~~~~iaaIG   79 (499)
T COG0554           4 DKYILAIDQGTTSSRAIVFDE-DGNIVAIAQREFTQIYPQPGWVEHDPLEIWASVRSVLKEALAK---AGIKPGEIAAIG   79 (499)
T ss_pred             ccEEEEEecCCcceeEEEECC-CCCchhhhhhhhhhhCCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCccceEEEE
Confidence            589999999999999999999 9999999999999999999999999999999999999999987   799999999999


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |+.|+.+++.||++||+|++|+|.|+|+|+...|+++
T Consensus        80 ITNQRETtvvWdk~tG~Pi~naIvWQdrRTa~~c~~L  116 (499)
T COG0554          80 ITNQRETTVVWDKETGKPIYNAIVWQDRRTADICEEL  116 (499)
T ss_pred             eeccceeEEEEeCCCCCCcccceeeeccchHHHHHHH
Confidence            9999999999999999999999999999999999875

>PF00370 FGGY_N: FGGY family of carbohydrate kinases, N-terminal domain; InterPro: IPR018484 It has been shown [] that four different type of carbohydrate kinases seem to be evolutionary related

Probab=99.94  E-value=2.2e-26  Score=168.47  Aligned_cols=110  Identities=24%  Similarity=0.347  Sum_probs=99.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|||++|++++|. +|+++...+.+++...+.+|+.++||++||+.+.+++++++++   ++..+.+|.+||++
T Consensus         1 y~lgiDiGTts~K~~l~d~-~g~iv~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~aI~is   76 (245)
T PF00370_consen    1 YYLGIDIGTTSVKAVLFDE-DGKIVASASRPYPYYTPEPGWAEQDPDEIWEAICEALKELLSQ---AGIDPEQIKAIGIS   76 (245)
T ss_dssp             EEEEEEECSSEEEEEEEET-TSCEEEEEEEEETEBCSSTTEEEE-HHHHHHHHHHHHHHHHHH---CTSCGGGEEEEEEE
T ss_pred             CEEEEEEcccceEEEEEeC-CCCEEEEEEEeeeeccccccccccChHHHHHHHHHHHHHHHhh---cCcccceeEEEEec
Confidence            7899999999999999998 9999999999999888889999999999999999999999987   57778899999999


Q ss_pred             cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +++++++++|++ |+|++|+++|.|.|+..+++++
T Consensus        77 ~~~~~~v~~D~~-~~pl~~~i~w~D~R~~~~~~~l  110 (245)
T PF00370_consen   77 GQGHGLVLLDKD-GKPLRPAILWMDTRAAEEAEEL  110 (245)
T ss_dssp             E-SSEEEEEETT-SSBSSCEE-TT-CTTHHHHHHH
T ss_pred             cccCCcceeccc-cccccccccccccchhhHHHHH
Confidence            999999999998 9999999999999998887654

These enzymes include L-fucolokinase (2.7.1.51 from EC) (gene fucK); gluconokinase (2.7.1.12 from EC) (gene gntK); glycerol kinase (2.7.1.30 from EC) (gene glpK); xylulokinase (2.7.1.17 from EC) (gene xylB); and L-xylulose kinase (2.7.1.53 from EC) (gene lyxK). These enzymes are proteins of from 480 to 520 amino acid residues. This entry represents the N-terminal domain of these proteins. It adopts a ribonuclease H-like fold and is structurally related to the C-terminal domain [, ].; GO: 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3G25_D 3GE1_D 2NLX_A 2ITM_A 2ZF5_Y 3L0Q_B 3GG4_B 3I8B_A 3H3O_C 3FLC_X ....

>PRK00047 glpK glycerol kinase; Provisional

Probab=99.94  E-value=3.4e-26  Score=182.44  Aligned_cols=116  Identities=36%  Similarity=0.518  Sum_probs=106.0

Q ss_pred             CCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582           9 VAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus         9 ~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      |+|+.|+||||+|||++|++|||. +|+++...+.+++...|.+|++|+||+.||+.+.+++++++++   ++.++++|.
T Consensus         1 ~~m~~~~lgiD~GTts~Ka~l~d~-~g~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~~~~~~~~---~~~~~~~I~   76 (498)
T PRK00047          1 MMMKKYILALDQGTTSSRAIIFDH-DGNIVSVAQKEFTQIFPQPGWVEHDPNEIWASQLSVIAEALAK---AGISPDQIA   76 (498)
T ss_pred             CCccCEEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCChhHee
Confidence            456679999999999999999998 9999999999998888899999999999999999999999876   577778899


Q ss_pred             EEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          89 TLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +||+++++++++++|+++|+|++|++.|.|.|+.++++++
T Consensus        77 ~Igis~~~~~~v~~D~~~G~pl~~~i~w~D~Ra~~~~~~l  116 (498)
T PRK00047         77 AIGITNQRETTVVWDKETGRPIYNAIVWQDRRTADICEEL  116 (498)
T ss_pred             EEEEecCcceEEEEECCCCcCCcccceecccchHHHHHHH
Confidence            9999999999999996559999999999999998887654

>PLN02295 glycerol kinase

Probab=99.93  E-value=1.1e-25  Score=180.15  Aligned_cols=110  Identities=37%  Similarity=0.601  Sum_probs=100.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC----eeE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD----IVT   89 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~----I~~   89 (129)
                      |+||||+|||++|++|||. +|+++.+.+.+++...|.+||+||||++||+.+.+++++++++   .+.++++    |.+
T Consensus         1 ~vlgID~GTts~Ka~l~d~-~G~~~~~~~~~~~~~~~~~G~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~~~i~~~i~a   76 (512)
T PLN02295          1 FVGAIDQGTTSTRFIIYDR-DARPVASHQVEFTQIYPQAGWVEHDPMEILESVLTCIAKALEK---AAAKGHNVDSGLKA   76 (512)
T ss_pred             CEEEEecCCCceEEEEECC-CCCEEEEEeecccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCCccccccceEE
Confidence            6899999999999999998 9999999999999888999999999999999999999999987   4666666    799


Q ss_pred             EEEecCcceEEEEe-CCCCcccccceeecCCCcccccCCC
Q psy1582          90 LGITNQRETTVVWD-LNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        90 Igis~~~~g~v~~d-~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||+++|++|+++|| ++ |+|++|+|.|+|.|+..+++++
T Consensus        77 Ig~s~q~~~~v~~dd~~-G~pl~~~i~w~D~Ra~~~~~~l  115 (512)
T PLN02295         77 IGITNQRETTVAWSKST-GRPLYNAIVWMDSRTSSICRRL  115 (512)
T ss_pred             EEEecCcceEEEEECCC-CCCcccceeccccchHHHHHHH
Confidence            99999999999995 65 9999999999999998887665

>COG1070 XylB Sugar (pentulose and hexulose) kinases [Carbohydrate transport and metabolism]

Probab=99.93  E-value=1.7e-25  Score=178.77  Aligned_cols=114  Identities=25%  Similarity=0.365  Sum_probs=105.4

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCC-CcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALT-QEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~-g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      +++.|+||||+|||++|++++|. + |++++..+.+++..+|.+||.|+||++||+.+.+++++++++   ..+++.+|.
T Consensus         1 ~~~~~~lgIDiGTt~~Kavl~d~-~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~w~~~~~ai~~l~~~---~~~~~~~I~   76 (502)
T COG1070           1 MMMKYVLGIDIGTTSVKAVLFDE-DGGEVVATARFENPVSTPQPGWAEQDPDELWQAILEALRQLLEE---SKIDPDAIA   76 (502)
T ss_pred             CCccEEEEEEcCCCcEEEEEEeC-CCCeEEEEeeccccccCCCCCCcccCHHHHHHHHHHHHHHHHHh---cccChhhce
Confidence            46789999999999999999999 7 899999999999888999999999999999999999999987   456778999


Q ss_pred             EEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          89 TLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +|||++|+||++++|++ |++++|++.|.|.|+..+|.++
T Consensus        77 aI~is~~~~g~vllD~~-g~~L~~~i~w~D~R~~~~~~~l  115 (502)
T COG1070          77 AIGISGQGHGLVLLDAN-GEPLRPAILWNDTRAAEEVEEL  115 (502)
T ss_pred             EEEEeccccceEEECCC-CCCccccceecchhhHHHHHHH
Confidence            99999999999999998 9999999999999998877653

>PTZ00294 glycerol kinase-like protein; Provisional

Probab=99.93  E-value=4e-25  Score=176.57  Aligned_cols=112  Identities=36%  Similarity=0.496  Sum_probs=101.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC--CeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD--DIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~--~I~~I   90 (129)
                      .|+||||+|||++|++|||. +|++++..+.+++...+.+|+.||||++||+.+++++++++++   .+..+.  +|.+|
T Consensus         2 ~~~lgiDiGTts~Ka~l~d~-~G~~v~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~l~~~~~~---~~~~~~~~~I~aI   77 (504)
T PTZ00294          2 KYIGSIDQGTTSTRFIIFDE-KGNVVSSHQIPHEQITPHPGWLEHDPEEILRNVYKCMNEAIKK---LREKGPSFKIKAI   77 (504)
T ss_pred             cEEEEEecCCCceEEEEECC-CCCEEEEEEEeecccCCCCCeEeeCHHHHHHHHHHHHHHHHHH---cCCCCccCceEEE
Confidence            38999999999999999998 9999999999998888889999999999999999999999887   444455  79999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |+++|+++++++|.+.|+|++|++.|.|.|+.+++++|
T Consensus        78 gis~q~~~~v~~D~~~g~pl~~~i~w~D~R~~~~~~~l  115 (504)
T PTZ00294         78 GITNQRETVVAWDKVTGKPLYNAIVWLDTRTYDIVNEL  115 (504)
T ss_pred             EeecCcceEEEEECCCCCCcccceeecchhhHHHHHHH
Confidence            99999999999987449999999999999998887654

>PRK04123 ribulokinase; Provisional

Probab=99.92  E-value=9.2e-25  Score=175.92  Aligned_cols=112  Identities=16%  Similarity=0.220  Sum_probs=101.5

Q ss_pred             CCeEEEEeCCCCceeEEEEe-CCCCcEEEEEEeeeccc------cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCC
Q psy1582          12 TQIRDRLSATYHTSRVLIIS-ALTQEEVVSHSMDISTI------SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR   84 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d-~~~g~iv~~~~~~~~~~------~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~   84 (129)
                      +.|+||||+|||++|++||| . +|+++.+.+.+++..      .|.+||+||||++||+.+.+++++++++   ++..+
T Consensus         2 ~~~~lgiD~GTts~Ka~l~d~~-~g~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~i~~~~~~---~~~~~   77 (548)
T PRK04123          2 MAYVIGLDFGTDSVRALLVDCA-TGEELATAVVEYPHWVKGRYLDLPPNQALQHPLDYIESLEAAIPAVLKE---AGVDP   77 (548)
T ss_pred             CcEEEEEecCCCceEEEEEECC-CCcEeEEEEeeccccccccccCCCCCceeeCHHHHHHHHHHHHHHHHHH---cCCCh
Confidence            46899999999999999999 6 899999998888743      5889999999999999999999999876   57777


Q ss_pred             CCeeEEEEecCcceEEEEeCCCCcccc-----------cceeecCCCcccccCCC
Q psy1582          85 DDIVTLGITNQRETTVVWDLNTGEPLY-----------NAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        85 ~~I~~Igis~~~~g~v~~d~~~g~~~~-----------~~i~w~d~r~~~~~~~~  128 (129)
                      .+|.+||+++++++++++|++ |+|++           |+|.|+|.|+..+++++
T Consensus        78 ~~I~aIgis~~~~~~v~~D~~-G~pl~~~~~~~~~p~~~~i~W~D~Ra~~~~~~l  131 (548)
T PRK04123         78 AAVVGIGVDFTGSTPAPVDAD-GTPLALLPEFAENPHAMVKLWKDHTAQEEAEEI  131 (548)
T ss_pred             hhEEEEEEecccceeEEECCC-CCEeecccccccCcccceeEeccCCHHHHHHHH
Confidence            889999999999999999997 99997           89999999998888765

>PRK10331 L-fuculokinase; Provisional

Probab=99.91  E-value=1.9e-24  Score=171.42  Aligned_cols=109  Identities=14%  Similarity=0.093  Sum_probs=97.8

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec--cccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +|+||||+|||++|+++||. +|++++..+.+++  ...+.+|+.||||++||+.+.+++++++++   .  .+.+|.+|
T Consensus         2 ~~~lgID~GTt~~Ka~l~d~-~G~~~~~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~~~~~---~--~~~~I~~I   75 (470)
T PRK10331          2 DVILVLDCGATNVRAIAVDR-QGKIVARASTPNASDIAAENSDWHQWSLDAILQRFADCCRQINSE---L--TECHIRGI   75 (470)
T ss_pred             ceEEEEecCCCceEEEEEcC-CCcEEEEEecccccccCCCCCCCcccCHHHHHHHHHHHHHHHHHh---C--CccceEEE
Confidence            48999999999999999998 9999999998876  456788999999999999999999999875   2  34579999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |+++++++++++|++ |+|++|+|.|.|.|+..+++++
T Consensus        76 ~is~~~~~~v~~D~~-G~pl~p~i~w~D~Ra~~~~~~l  112 (470)
T PRK10331         76 TVTTFGVDGALVDKQ-GNLLYPIISWKCPRTAAVMENI  112 (470)
T ss_pred             EEeccccceEEECCC-cCCccCceeecCCCcHHHHHHH
Confidence            999999999999997 9999999999999998877654

>PRK15027 xylulokinase; Provisional

Probab=99.91  E-value=1.7e-24  Score=172.20  Aligned_cols=108  Identities=22%  Similarity=0.271  Sum_probs=99.4

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|||++|++|||. +|++++..+.+++...+.+|+.|+||++||+.+.+++++++++   .  ..++|.+||++
T Consensus         1 ~~lgID~GTts~Ka~l~d~-~G~vva~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~---~--~~~~I~aI~is   74 (484)
T PRK15027          1 MYIGIDLGTSGVKVILLNE-QGEVVASQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIA   74 (484)
T ss_pred             CEEEEEecccceEEEEEcC-CCCEEEEEeecccccCCCCCccccCHHHHHHHHHHHHHHHHHh---C--CccceeEEEEe
Confidence            5799999999999999998 9999999999998888889999999999999999999999875   2  35689999999


Q ss_pred             cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +|++|++++|++ |++++|+++|.|.|+.++++++
T Consensus        75 ~q~~~~v~~D~~-g~~l~p~i~w~D~R~~~~~~~l  108 (484)
T PRK15027         75 GQMHGATLLDAQ-QRVLRPAILWNDGRCAQECALL  108 (484)
T ss_pred             cCCCceEEECCC-cCCccccccccCccHHHHHHHH
Confidence            999999999997 9999999999999998887654

>TIGR01311 glycerol_kin glycerol kinase

Probab=99.91  E-value=4e-24  Score=170.35  Aligned_cols=112  Identities=38%  Similarity=0.603  Sum_probs=103.0

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|||++|+++||. +|+++...+.+++...|.+|++++||+.||+.+.+++++++.+   .+.++++|.+||+
T Consensus         1 ~~~lgiDiGtt~iKa~l~d~-~g~~l~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~aIgi   76 (493)
T TIGR01311         1 PYILAIDQGTTSSRAIVFDK-DGNIVAIHQKEFTQIFPKPGWVEHDPMEIWESVLSCIAEALAK---AGIKPDDIAAIGI   76 (493)
T ss_pred             CeEEEEecCCCceEEEEECC-CCCEEEEEeeeccccCCCCCcEeeCHHHHHHHHHHHHHHHHHH---cCCChhheeEEEE
Confidence            47999999999999999998 9999999999998888899999999999999999999999887   5777788999999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ++++++++++|+++|++++|++.|.|.|+..+++++
T Consensus        77 s~~~~~~v~~D~~~G~~l~p~i~w~D~R~~~~~~~l  112 (493)
T TIGR01311        77 TNQRETTVVWDKATGKPLYNAIVWQDRRTASICEEL  112 (493)
T ss_pred             ecCcceEEEEECCCCcCcccceeecccchHHHHHHH
Confidence            999999999997559999999999999998877654

This model describes glycerol kinase, a member of the FGGY family of carbohydrate kinases.

>TIGR01234 L-ribulokinase L-ribulokinase

Probab=99.91  E-value=2.7e-24  Score=172.87  Aligned_cols=110  Identities=18%  Similarity=0.224  Sum_probs=98.8

Q ss_pred             eEEEEeCCCCceeEEEEe-CCCCcEEEEEEeeecc-----ccCC------CCeEEECHHHHHHHHHHHHHHHHHHHHhCC
Q psy1582          14 IRDRLSATYHTSRVLIIS-ALTQEEVVSHSMDIST-----ISPQ------EGWAEQDPMEILQAVQTTMDRAIEKLSAHG   81 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d-~~~g~iv~~~~~~~~~-----~~~~------~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~   81 (129)
                      |+||||+|||++|++||| . +|++++..+.+++.     ..|.      +|++||||++||+.+.+++++++++   .+
T Consensus         2 ~~lgiD~GTss~Ka~l~d~~-~G~~~a~~~~~~~~~~~~~~~~~~~~~~~~g~~Eqdp~~~w~~~~~~~~~~~~~---~~   77 (536)
T TIGR01234         2 YAIGVDFGTLSGRALAVDVA-TGEEIATAVEWYRHWVKGQFLPKTGAKLPNDQALQHPADYIEVLEAAIPTVLAE---LG   77 (536)
T ss_pred             eEEEEecCCCceEEEEEECC-CCcEeeeeeeccccccccccCCCccccCCCCccccCHHHHHHHHHHHHHHHHHH---cC
Confidence            789999999999999999 8 99999999888873     3553      8999999999999999999999987   56


Q ss_pred             CCCCCeeEEEEecCcceEEEEeCCCCccccc-----------ceeecCCCcccccCCC
Q psy1582          82 LSRDDIVTLGITNQRETTVVWDLNTGEPLYN-----------AIEQGLRIVDCGSGRF  128 (129)
Q Consensus        82 ~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~-----------~i~w~d~r~~~~~~~~  128 (129)
                      .++++|.+||+++|+++++++|++ |+|++|           +|.|.|.|+.++|+++
T Consensus        78 ~~~~~I~aI~~s~q~~s~v~~D~~-g~pl~~~~~~~~~~~~~~i~W~D~Ra~~~~~~l  134 (536)
T TIGR01234        78 VDPADVVGIGVDFTACTPAPIDSD-GNPLCLLPEFAENPHAYFKLWKHHAAQEEADRI  134 (536)
T ss_pred             CCHHHEEEEEEecCcceeEEECCC-CCEeecccccccCcccceeeeccCCcHHHHHHH
Confidence            667789999999999999999997 999983           8999999999888765

This enzyme catalyzes the second step in arabinose catabolism. The most closely related protein subfamily outside the scope of this model includes ribitol kinase from E. coli.

>TIGR02628 fuculo_kin_coli L-fuculokinase

Probab=99.91  E-value=4.5e-24  Score=169.09  Aligned_cols=108  Identities=16%  Similarity=0.101  Sum_probs=97.1

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec--cccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDIS--TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~--~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++||||+|||++|++|||. +|++++..+.+++  ...+.+|+.||||++||+.+.+++++++.+     ..+.+|.+||
T Consensus         2 ~ilgiD~GTss~K~~l~d~-~g~~va~~~~~~~~~~~~~~~g~~eqd~~~~w~~~~~~~~~l~~~-----~~~~~I~aI~   75 (465)
T TIGR02628         2 VILVLDCGATNLRAIAINR-QGKIVASASTPNATKQAIENNDYHIWDLEAIWQKLADCCQQINSE-----LTEKHIRGIA   75 (465)
T ss_pred             eEEEEecCCCcEEEEEEcC-CCCEEEEEecccccCCCCCCCCceeeCHHHHHHHHHHHHHHHHhh-----cChhceEEEE
Confidence            7899999999999999998 9999999988865  456789999999999999999999999853     3456799999


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +++|+++++++|++ |+|++|++.|.|+|+..+++++
T Consensus        76 ~s~~~~~~v~~D~~-G~~l~p~i~w~D~R~~~~~~~l  111 (465)
T TIGR02628        76 VTTFGVDGAPFDKQ-GNQLYPIISWKCPRTAPVMDNI  111 (465)
T ss_pred             EeccccceEEECCC-CCCccccccccCcccHHHHHHH
Confidence            99999999999997 9999999999999998887654

Members of this family are L-fuculokinase, from the clade that includes the L-fuculokinase of Escherichia coli. This enzyme catalyzes the second step in fucose catabolism. This family belongs to FGGY family of carbohydrate kinases (pfam02782, pfam00370). It is encoded by the kinase (K) gene of the fucose (fuc) operon.

>TIGR01315 5C_CHO_kinase FGGY-family pentulose kinase

Probab=99.90  E-value=6e-24  Score=171.12  Aligned_cols=109  Identities=19%  Similarity=0.231  Sum_probs=100.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|||++|++|||. +|+++.+.+.+++...|.+|++|+||++||+.+.+++++++++   .+.++++|.+|||+
T Consensus         1 ~~lgID~GTts~Ka~l~d~-~G~i~~~~~~~~~~~~~~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~Igis   76 (541)
T TIGR01315         1 HYIGVDVGTGSARACIIDS-TGDILALAAQNIKTWTPSSGLEGQSSVYIWQAICNCVKQVLAE---SKVDPNSVKGIGFD   76 (541)
T ss_pred             CEEEEEecCcCEEEEEEcC-CCCEEEEEEeeeeeccCCCCcccCCHHHHHHHHHHHHHHHHHH---cCCChhheEEEEec
Confidence            4799999999999999998 9999999998888888899999999999999999999999886   56677889999999


Q ss_pred             cCcceEEEEeCCCCccc---------ccceeecCCCcccccCCC
Q psy1582          94 NQRETTVVWDLNTGEPL---------YNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~---------~~~i~w~d~r~~~~~~~~  128 (129)
                      ++ ++++++|++ |+|+         +|+|.|+|.|+.++++++
T Consensus        77 ~~-~s~v~~D~~-g~pl~~~~~~~~~~~~i~W~D~Ra~~~~~~l  118 (541)
T TIGR01315        77 AT-CSLVVLTHD-GEPLPVSKNGGADQNIILWMDHRALAEAEKI  118 (541)
T ss_pred             cc-ccceEEcCC-CCeeecCCCCCcccceeEeecCcHHHHHHHH
Confidence            99 899999997 9999         899999999999888765

This model represents a subfamily of the FGGY family of carbohydrate kinases. This subfamily is closely related to a set of ribulose kinases, and many members are designated ribitol kinase. However, the member from Klebsiella pneumoniae, from a ribitol catabolism operon, accepts D-ribulose and to a lesser extent D-arabinitol and ribitol (PubMed:9639934 and JW Lengeler, personal communication); its annotation in GenBank as ribitol kinase is imprecise and may have affected public annotation of related proteins.

>TIGR01314 gntK_FGGY gluconate kinase, FGGY type

Probab=99.90  E-value=1.2e-23  Score=168.13  Aligned_cols=109  Identities=18%  Similarity=0.224  Sum_probs=99.2

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|||++|++++|. +|+++.+.+.+++...+.+|+.++||++||+.+.+++++++++   .+.. .+|.+|||+
T Consensus         1 ~~lgiDiGtt~~K~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~-~~I~~Igis   75 (505)
T TIGR01314         1 YMIGVDIGTTSTKAVLFEE-NGKIVAKSSIGYPLYTPASGMAEENPEEIFEAVLVTIREVSIN---LEDE-DEILFVSFS   75 (505)
T ss_pred             CEEEEeccccceEEEEEcC-CCCEEEEEEeecccccCCCCCeeeCHHHHHHHHHHHHHHHHHh---CCCc-CceEEEEEe
Confidence            5899999999999999998 9999999999888777888999999999999999999999876   3444 679999999


Q ss_pred             cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ++++++++||++ |+|++|+++|.|.|+.++++++
T Consensus        76 ~~~~~~v~~D~~-g~pl~~~i~w~D~R~~~~~~~l  109 (505)
T TIGR01314        76 TQMHSLIAFDEN-WQPLTRLITWADNRAVKYAEQI  109 (505)
T ss_pred             cccceeEEECCC-cCCcccceeccccchHHHHHHH
Confidence            999999999997 9999999999999998877654

Gluconate is derived from glucose in two steps. This model describes one form of gluconate kinase, belonging to the FGGY family of carbohydrate kinases. Gluconate kinase phosphoryates gluconate for entry into the Entner-Douderoff pathway.

>PRK10939 autoinducer-2 (AI-2) kinase; Provisional

Probab=99.90  E-value=2.8e-23  Score=166.53  Aligned_cols=110  Identities=18%  Similarity=0.214  Sum_probs=97.9

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +|+||||+|||++|+++||. +|+++...+.+++..  .+.+|++|+||++||+.+.+++++++++   ++..+.+|.+|
T Consensus         3 ~~~lgID~GTts~Ka~l~d~-~G~~l~~~~~~~~~~~~~~~~g~~Eqd~~~~w~~~~~~l~~~~~~---~~~~~~~I~aI   78 (520)
T PRK10939          3 SYLMALDAGTGSIRAVIFDL-NGNQIAVGQAEWRHLAVPDVPGSMEFDLEKNWQLACQCIRQALQK---AGIPASDIAAV   78 (520)
T ss_pred             cEEEEEecCCCceEEEEECC-CCCEEEEEeccccccCCCCCCCCeeECHHHHHHHHHHHHHHHHHH---cCCCccceEEE
Confidence            59999999999999999998 999999988887644  4568999999999999999999999876   56667789999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |+++|++++++||++ |+|+++ +.|.|.|+..+++++
T Consensus        79 ~~s~~~~~~v~~D~~-g~pl~~-~~~~D~Ra~~~~~~l  114 (520)
T PRK10939         79 SATSMREGIVLYDRN-GTEIWA-CANVDARASREVSEL  114 (520)
T ss_pred             EEECCcccEEEECCC-CCEeeC-CcCCCcccHHHHHHH
Confidence            999999999999997 999975 568999998887664

>PLN02669 xylulokinase

Probab=99.87  E-value=3.6e-22  Score=161.27  Aligned_cols=114  Identities=10%  Similarity=0.119  Sum_probs=98.1

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccC---CCCeEEECHH----------HHHHHHHHHHHHHHHH
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISP---QEGWAEQDPM----------EILQAVQTTMDRAIEK   76 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~---~~g~~~~~~~----------~~~~~i~~~~~~~~~~   76 (129)
                      +...|+||||+|||++|++|||. +|++++..+.+++.+.|   .+|++++||+          .||+++..+++++.+ 
T Consensus         5 ~~~~~~LGiD~GT~s~Ka~l~d~-~g~vv~~a~~~~~~~~~~~~~~~gve~dp~~~~~~~~~~~~w~~al~~~l~~l~~-   82 (556)
T PLN02669          5 PEDSLFLGFDSSTQSLKATVLDS-NLRIVASEIVHFDSDLPHYGTKDGVYRDPKVNGRIVSPTLMWVEALDLLLQKLAK-   82 (556)
T ss_pred             CCCCeEEEEecccCCeEEEEEcC-CCCEEEEEEecCCcccCcCCCCCceEeCCcccCccCCCHHHHHHHHHHHHHHHHH-
Confidence            34679999999999999999999 99999999999875433   4567999998          688999999999873 


Q ss_pred             HHhCCCCCCCeeEEEEecCcceEEEEeCCCCccc-------------------ccceeecCCCcccccCCC
Q psy1582          77 LSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL-------------------YNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        77 ~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~-------------------~~~i~w~d~r~~~~~~~~  128 (129)
                         ++.++++|.+||+++|+||+++||++.|+++                   .|.+.|+|.|+..+|++|
T Consensus        83 ---~~~~~~~I~aIs~s~Q~~g~v~~d~~~~~~L~~ld~~g~l~~~L~~a~~~~~~i~W~D~Ra~~e~~~l  150 (556)
T PLN02669         83 ---EKFPFHKVVAISGSGQQHGSVYWRKGASAVLKSLDPSKSLVAQLQDAFSTKDSPIWMDSSTTKQCREI  150 (556)
T ss_pred             ---cCCChhhEEEEEecCCcceEEEecCCCCccccccccccchhhhhhhhhcCCCCcccCCccHHHHHHHH
Confidence               4777789999999999999999988557776                   578899999999999876

>KOG2517|consensus

Probab=99.85  E-value=9.1e-21  Score=149.92  Aligned_cols=118  Identities=31%  Similarity=0.439  Sum_probs=105.7

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      .++++|||+|||+.|++|||..+|+++..++.++....|.+||++|+|.++|+.+.+|++++.+++...+.....+.+||
T Consensus         5 ~~~~~gIDvGTtSaR~~v~~~~~~e~l~~~~~~i~~~~~~~~~~eq~p~eI~~~V~~ci~~~~e~l~~~~~~~~~~~~ig   84 (516)
T KOG2517|consen    5 EPVVLGIDVGTTSARALVFNAKNGELLSLAQKEITQEFPKEGWVEQDPKEIWQAVCRCIEKACEKLGVLNIKVVGATCIG   84 (516)
T ss_pred             cceEEEEEcCCCceEEEEEecCCCccceeeeeeeeeecCCCCeEEeCHHHHHHHHHHHHHHHHHhhccccccccccEEEE
Confidence            58999999999999999999549999999999999889999999999999999999999998877533344445677899


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRFN  129 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~~  129 (129)
                      ++.|++|.++|++.+|+|.+++|.|+|.|+...|+++|
T Consensus        85 v~~qr~~~v~w~~~tg~p~~niI~W~D~Ra~~~~~~ln  122 (516)
T KOG2517|consen   85 VVNQREGSVLWNKRTGEPLTNIIVWMDHRAVSEVEELN  122 (516)
T ss_pred             EEecCCceEEeecCCCCcccceEEeeccccHHHHHHHH
Confidence            99999999999999999999999999999999888765

>TIGR01312 XylB D-xylulose kinase

Probab=99.84  E-value=7.4e-21  Score=150.75  Aligned_cols=107  Identities=26%  Similarity=0.333  Sum_probs=97.2

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      ||||+|||++|++|+|. +|+++.+.+.+++...+.+|+.+++|+++|+.+.+++++++++   .+.++.+|.+||++++
T Consensus         1 lgIDiGtt~ik~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~l~~~i~~~~~~---~~~~~~~I~gIgvs~~   76 (481)
T TIGR01312         1 LGIDLGTSGVKALLVDE-QGEVIASGSAPHTVISPHPGWSEQDPEDWWDATEEAIKELLEQ---ASEMGQDIKGIGISGQ   76 (481)
T ss_pred             CceeecCcceEEEEECC-CCCEEEEEeecccccCCCCCCeeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEEecC
Confidence            68999999999999998 9999999999998888899999999999999999999999987   5677789999999999


Q ss_pred             cceEEEEeCCCCcccccceeecCCCcccccCC
Q psy1582          96 RETTVVWDLNTGEPLYNAIEQGLRIVDCGSGR  127 (129)
Q Consensus        96 ~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~  127 (129)
                      ++|+++||++ |++++|.+.|.|.|...++++
T Consensus        77 ~~g~v~~d~~-g~~l~~~i~W~D~r~~~~~~~  107 (481)
T TIGR01312        77 MHGLVLLDAN-GEVLRPAILWNDTRTAQECEE  107 (481)
T ss_pred             CceeEEECCC-cCCCccchhhhccchHHHHHH
Confidence            9999999975 999999999999998555443

D-xylulose kinase (XylB) generally is found with xylose isomerase (XylA) and acts in xylose utilization.

>TIGR02627 rhamnulo_kin rhamnulokinase

Probab=99.82  E-value=2e-20  Score=147.84  Aligned_cols=104  Identities=14%  Similarity=0.075  Sum_probs=90.1

Q ss_pred             EEEeCCCCceeEEEEeCCC---CcEE-EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          16 DRLSATYHTSRVLIISALT---QEEV-VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~---g~iv-~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      +|||+|||++|++++|. +   |+++ .....+++...+.+++.++||+.||+.+.++++++...       ..+|.+||
T Consensus         1 ~aiD~Gtt~~k~~l~~~-~~~~~~~~~~~~~~~~~~~~~~~~~~~~d~~~~~~~~~~~l~~~~~~-------~~~i~~Ig   72 (454)
T TIGR02627         1 VAVDLGASSGRVMLASY-ENECQKLTLEEIHRFKNGLVSQNGHECWDIDALEQEIRLGLNKVDAE-------GIAPDSIG   72 (454)
T ss_pred             CcEeccCCchheEEEEE-cCCCceEEEEEEEeCCCCCEeECCEEEEehHHHHHHHHHHHHHHhcc-------CCCceEEE
Confidence            58999999999999998 6   5666 56666666667788999999999999999999888642       35699999


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |++|+++++++|++ |+|++|++.|.|.|+.++++++
T Consensus        73 is~q~~~~v~~D~~-G~~l~p~i~w~D~R~~~~~~~l  108 (454)
T TIGR02627        73 IDTWGVDFVLLDQN-GQRVGDPVSYRDSRTDGVMAQV  108 (454)
T ss_pred             EeccceeEEEEcCC-CCCccCceecCCCCCHHHHHHH
Confidence            99999999999997 9999999999999998887654

This model describes rhamnulokinase, an enzyme that catalyzes the second step in rhamnose catabolism.

>COG1069 AraB Ribulose kinase [Energy production and conversion]

Probab=99.80  E-value=1.1e-19  Score=143.37  Aligned_cols=114  Identities=19%  Similarity=0.182  Sum_probs=104.2

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      ++.|+||||+||.|.|+++||..+|++++.+..|++...+.+...+|++.++|++++.++++++++   +|+++.+|++|
T Consensus         1 ~~~~~iGvDvGTgSaRA~v~D~~~G~~la~a~~p~~~~~~~~~~~~q~s~d~~~av~~aVr~~v~~---agv~~~~V~gI   77 (544)
T COG1069           1 MMAYVIGVDVGTGSARAGVFDCQTGTLLARAVRPYPMWQPGSNLAEQHSRDYWEAVCAAVRDVVAK---AGVDPADVVGI   77 (544)
T ss_pred             CccEEEEEeecCCceeEEEEEcCCCcchhhcccceeccccCccccccCHHHHHHHHHHHHHHHHHH---cCCChhHeeEE
Confidence            467999999999999999999845999999999999888888889999999999999999999998   89999999999


Q ss_pred             EEecCcceEEEEeCCCCcccc---------cceeecCCCcccccCCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLY---------NAIEQGLRIVDCGSGRFN  129 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~---------~~i~w~d~r~~~~~~~~~  129 (129)
                      |++.. ++++++|++ |+|+.         +.+.|+|.|+..+++++|
T Consensus        78 GvDaT-cSlvv~d~~-g~pl~v~~~~~~~~~vilWmDHrA~~EAe~in  123 (544)
T COG1069          78 GVDAT-CSLVVIDRD-GNPLAVLPEFPNNPNVILWMDHRAVEEAEEIN  123 (544)
T ss_pred             EEcce-eeeEEECCC-CCeeccCCCCCCCCceEEeccchHHHHHHHHH
Confidence            99999 999999997 98873         157899999999998876

>PRK10640 rhaB rhamnulokinase; Provisional

Probab=99.31  E-value=7.7e-12  Score=99.67  Aligned_cols=72  Identities=17%  Similarity=0.160  Sum_probs=62.8

Q ss_pred             cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          49 SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        49 ~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      .+.+++.++||+.||+.+.++++++..       .+.+|.+|||+++++++++||++ |+|++|+|.|+|.|+..+++++
T Consensus        25 ~~~~~~~~~d~~~~~~~i~~~l~~~~~-------~~~~I~~Igis~q~~~~v~lD~~-G~pL~pai~w~D~Ra~~~~~~l   96 (471)
T PRK10640         25 HSQDGFDTWDVDSLESAIRLGLNKVCE-------EGIRIDSIGIDTWGVDYVLLDKQ-GQRVGLPVSYRDSRTDGVMAQA   96 (471)
T ss_pred             eeeCCeeEECHHHHHHHHHHHHHHHhh-------cCCCccEEEEcCCcccEEEECCC-CCCcCCceeccCCCCHHHHHHH
Confidence            356788999999999999998877754       24679999999999999999997 9999999999999998887654

>TIGR00241 CoA_E_activ CoA-substrate-specific enzyme activase, putative

Probab=99.10  E-value=3.2e-10  Score=83.52  Aligned_cols=70  Identities=11%  Similarity=0.205  Sum_probs=58.1

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |++|||+|||++|++++|  +|+++...+.              +|+.||+.+.+++++++++   .+.++.+|.+|+++
T Consensus         1 ~~lGIDiGtts~K~vl~d--~g~il~~~~~--------------~~~~~~~~~~~~l~~~~~~---~~~~~~~i~~i~~T   61 (248)
T TIGR00241         1 ISLGIDSGSTTTKMVLME--DGKVIGYKWL--------------DTTPVIEETARAILEALKE---AGIGLEPIDKIVAT   61 (248)
T ss_pred             CEEEEEcChhheEEEEEc--CCEEEEEEEe--------------cCCCCHHHHHHHHHHHHHH---cCCChhheeEEEEE
Confidence            579999999999999998  5788886543              4555788888888888876   67777899999999


Q ss_pred             cCcceEEEE
Q psy1582          94 NQRETTVVW  102 (129)
Q Consensus        94 ~~~~g~v~~  102 (129)
                      ++++++++.
T Consensus        62 g~~~~~v~~   70 (248)
T TIGR00241        62 GYGRHKVGF   70 (248)
T ss_pred             CCCcccccc
Confidence            999998763

This domain may be involved in generating or regenerating the active sites of enzymes related to (R)-2-hydroxyglutaryl-CoA dehydratase and benzoyl-CoA reductase.

>PRK09698 D-allose kinase; Provisional

Probab=99.01  E-value=3.3e-09  Score=79.81  Aligned_cols=90  Identities=7%  Similarity=0.012  Sum_probs=66.1

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +..+++|||+|+|+++++++|. +|+++.+.+.+++.        ..+++. ++.+.+.+++++++   .+   .++.+|
T Consensus         2 ~~~~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~~--------~~~~~~-~~~l~~~i~~~~~~---~~---~~i~gi   65 (302)
T PRK09698          2 QKNVVLGIDMGGTHIRFCLVDA-EGEILHCEKKRTAE--------VIAPDL-VSGLGEMIDEYLRR---FN---ARCHGI   65 (302)
T ss_pred             CccEEEEEEcCCcEEEEEEEcC-CCCEEEEEEeCCcc--------ccchHH-HHHHHHHHHHHHHH---cC---CCeeEE
Confidence            4578999999999999999999 99999887766531        123444 77788888888775   22   579999


Q ss_pred             EEecCcceEEEEeCCCCcccc-ccee---ecCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLY-NAIE---QGLRI  120 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~-~~i~---w~d~r  120 (129)
                      ||+.++    ++|.++|.++. |.+.   |.+..
T Consensus        66 gia~pG----~vd~~~g~i~~~~~~~~~~~~~~~   95 (302)
T PRK09698         66 VMGFPA----LVSKDRRTVISTPNLPLTALDLYD   95 (302)
T ss_pred             EEeCCc----ceeCCCCEEEecCCCCccccccCC
Confidence            999987    67876565543 4444   66643

>PRK13311 N-acetyl-D-glucosamine kinase; Provisional

Probab=98.99  E-value=2.5e-09  Score=78.95  Aligned_cols=86  Identities=8%  Similarity=0.025  Sum_probs=60.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      +++|||||+|++|++++|. +|+++.+.+.+++         ..+++++++.+.+.+++....       ...+.+|||+
T Consensus         1 ~~lgidiggt~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgv~   63 (256)
T PRK13311          1 MYYGFDMGGTKIELGVFDE-NLQRIWHKRVPTP---------REDYPQLLQILRDLTEEADTY-------CGVQGSVGIG   63 (256)
T ss_pred             CEEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCCceEEEE
Confidence            4699999999999999999 9999988777653         135666777777666655332       1334589999


Q ss_pred             cCcceEEEEeCCCCcccccce-eecCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAI-EQGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i-~w~d~r  120 (129)
                      .++    ++|.++|....+.+ .|.+..
T Consensus        64 ~pG----~vd~~~g~i~~~~~~~w~~~~   87 (256)
T PRK13311         64 IPG----LPNADDGTVFTANVPSAMGQP   87 (256)
T ss_pred             ecC----cEECCCCEEEccCCCcccCCC
Confidence            877    56876676554444 477643

>TIGR00744 ROK_glcA_fam ROK family protein (putative glucokinase)

Probab=98.98  E-value=2.6e-09  Score=80.79  Aligned_cols=87  Identities=13%  Similarity=0.171  Sum_probs=67.9

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      ||||+|+|+++++++|. +|+++.+.+.+.+          .+++.+++.+.+.+++++++   .+....++.+|||+.+
T Consensus         1 lgidig~t~~~~~l~d~-~g~i~~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gIgva~p   66 (318)
T TIGR00744         1 IGVDIGGTTIKLGVVDE-EGNILSKWKVPTD----------TTPETIVDAIASAVDSFIQH---IAKVGHEIVAIGIGAP   66 (318)
T ss_pred             CEEEeCCCEEEEEEECC-CCCEEEEEEeCCC----------CCHHHHHHHHHHHHHHHHHh---cCCCccceEEEEEecc
Confidence            68999999999999999 8999987666442          25778888899999888876   5666678999999987


Q ss_pred             cceEEEEeCCCCcccc-cceeecCCC
Q psy1582          96 RETTVVWDLNTGEPLY-NAIEQGLRI  120 (129)
Q Consensus        96 ~~g~v~~d~~~g~~~~-~~i~w~d~r  120 (129)
                      +    ++|.++|.... |.+.|.+..
T Consensus        67 G----~vd~~~g~~~~~~~~~w~~~~   88 (318)
T TIGR00744        67 G----PVNRQRGTVYFAVNLDWKQEP   88 (318)
T ss_pred             c----cccCCCCEEEecCCCCCCCCC
Confidence            7    66876576543 445687744

This alignment models one branch of the ROK superfamily of proteins. The three members of the seed alignment for this model all have experimental evidence for activity as glucokinase, but the set of related proteins is crowded with paralogs of different or unknown function. Proteins scoring above the trusted_cutoff will show strong similarity to at least one known glucokinase and may be designated as putative glucokinases. However, definitive identification of glucokinases should be done only with extreme caution.

>PRK13310 N-acetyl-D-glucosamine kinase; Provisional

Probab=98.91  E-value=5.6e-09  Score=78.67  Aligned_cols=86  Identities=9%  Similarity=-0.016  Sum_probs=62.8

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      +++|||+|+|+++++++|. +|+++.+.+.+++         ..+++.+.+.+.+.++++...       ...+.+|||+
T Consensus         1 ~~lgidig~t~i~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~~igia   63 (303)
T PRK13310          1 MYYGFDIGGTKIELGVFNE-KLELQWEERVPTP---------RDSYDAFLDAVCELVAEADQR-------FGCKGSVGIG   63 (303)
T ss_pred             CeEEEEeCCCcEEEEEECC-CCcEEEEEEecCC---------CcCHHHHHHHHHHHHHHHHhh-------cCCcceEEEe
Confidence            3699999999999999999 9999987776553         135777888888777766543       1234589999


Q ss_pred             cCcceEEEEeCCCCcccccce-eecCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAI-EQGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i-~w~d~r  120 (129)
                      .++    ++|.++|....+.+ .|.+..
T Consensus        64 ~pG----~vd~~~g~~~~~~~~~w~~~~   87 (303)
T PRK13310         64 IPG----MPETEDGTLYAANVPAASGKP   87 (303)
T ss_pred             CCC----cccCCCCEEeccCcccccCCc
Confidence            887    67876676655444 487643

>PRK09557 fructokinase; Reviewed

Probab=98.90  E-value=6.4e-09  Score=78.34  Aligned_cols=82  Identities=16%  Similarity=0.126  Sum_probs=60.5

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|+|+++++++|. +|+++.+.+.+++         ..+++.+.+.+.+.++++...       ...+.+||++
T Consensus         1 ~~lgidig~t~~~~~l~d~-~g~i~~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~-------~~~~~gIgi~   63 (301)
T PRK09557          1 MRIGIDLGGTKIEVIALDD-AGEELFRKRLPTP---------RDDYQQTIEAIATLVDMAEQA-------TGQRGTVGVG   63 (301)
T ss_pred             CEEEEEECCCcEEEEEECC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHhh-------cCCceEEEec
Confidence            4799999999999999999 9999987776553         135667777777777766543       1356789999


Q ss_pred             cCcceEEEEeCCCCcccccceee
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQ  116 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w  116 (129)
                      .++    ++|.++|.+..+...|
T Consensus        64 ~pG----~vd~~~g~i~~~~~~~   82 (301)
T PRK09557         64 IPG----SISPYTGLVKNANSTW   82 (301)
T ss_pred             Ccc----cCcCCCCeEEecCCcc
Confidence            877    6787667665544446

>KOG2531|consensus

Probab=98.89  E-value=3.8e-09  Score=82.87  Aligned_cols=111  Identities=14%  Similarity=0.179  Sum_probs=82.4

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCC----CCe-------EEECHH-HHHHHHHHHHHHHHHHHHh
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQ----EGW-------AEQDPM-EILQAVQTTMDRAIEKLSA   79 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~----~g~-------~~~~~~-~~~~~i~~~~~~~~~~~~~   79 (129)
                      ...+||+|++|+.+|++++|. +++++......++.+.|+    .|.       .-..|. .|.+++.-.++++.    +
T Consensus         8 ~~~fLG~DlSTQqlKaviids-~LnVv~~~~V~Fd~DLpef~T~~GV~~~g~~~~i~~PV~MWveAlDlll~kl~----~   82 (545)
T KOG2531|consen    8 DRSFLGFDLSTQQLKAVIIDS-NLNVVHTEAVHFDTDLPEFGTKNGVYRNGGGETITSPVLMWVEALDLLLDKLR----E   82 (545)
T ss_pred             CceeeeeecccceeEEEEEcC-CccEEEEEEEeeccccccccccCceEeCCCCcEEeccHHHHHHHHHHHHHHHH----H
Confidence            346899999999999999999 999999999888877653    222       222455 66666655555544    3


Q ss_pred             CCCCCCCeeEEEEecCcceEEEEeCCCCc-cccc-------------------ceeecCCCcccccCCC
Q psy1582          80 HGLSRDDIVTLGITNQRETTVVWDLNTGE-PLYN-------------------AIEQGLRIVDCGSGRF  128 (129)
Q Consensus        80 ~~~~~~~I~~Igis~~~~g~v~~d~~~g~-~~~~-------------------~i~w~d~r~~~~~~~~  128 (129)
                      +|.+...|.+|+-++|.||.|+|.+. ++ .+..                   ...|+|..++.+|.++
T Consensus        83 ~~~d~~kV~aiSGagQQHGsVyWs~g-a~~~L~~Ld~~~~L~eQle~aF~v~~sP~WmDsSTtkQC~El  150 (545)
T KOG2531|consen   83 AGFDLSKVMAISGAGQQHGSVYWSKG-AENALESLDPEKSLHEQLESAFSVQTSPIWMDSSTTKQCQEL  150 (545)
T ss_pred             cCCCHHHhhhhcccccccceeeehhh-hHHHHhcCChhhHHHHHHHHhhcccCCCcccccchHHHHHHH
Confidence            68888999999999999999999764 32 1111                   2369999988888654

>COG1940 NagC Transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=98.89  E-value=1.3e-08  Score=77.04  Aligned_cols=92  Identities=13%  Similarity=0.066  Sum_probs=62.3

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      +++.+++|||||+|++|++++|. .|+++.+.+.+++.        ..+.+.+.+.+.+.++++++.   .+ ...++.+
T Consensus         3 ~~~~~~lgidIggt~i~~~l~d~-~g~~l~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~---~~-~~~~~iG   69 (314)
T COG1940           3 PEAMTVLGIDIGGTKIKVALVDL-DGEILLRERIPTPT--------PDPEEAILEAILALVAELLKQ---AQ-GRVAIIG   69 (314)
T ss_pred             ccCcEEEEEEecCCEEEEEEECC-CCcEEEEEEEecCC--------CCchhHHHHHHHHHHHHHHHh---cC-CcCceEE
Confidence            45678999999999999999999 99999988888763        122346778888888888765   22 2344666


Q ss_pred             EEEecCcceEEEEeCCCCcccccceeecC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLYNAIEQGL  118 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d  118 (129)
                      ||+++++    .++..+-....|.+.|.+
T Consensus        70 Igi~~pg----~~~~~~~~~~~~~~~~~~   94 (314)
T COG1940          70 IGIPGPG----DVDNGTVIVPAPNLGWWN   94 (314)
T ss_pred             EEeccce----eccCCcEEeecCCCCccc
Confidence            6666543    445542022345555544

>PF00480 ROK: ROK family; InterPro: IPR000600 A family of bacterial proteins has been described which groups transcriptional repressors, sugar kinases and yet uncharacterised open reading frames []

Probab=98.81  E-value=4.7e-08  Score=68.10  Aligned_cols=82  Identities=16%  Similarity=0.211  Sum_probs=66.0

Q ss_pred             EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582          17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR   96 (129)
Q Consensus        17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~   96 (129)
                      |||||+++++++++|. .|+++.+.+.+++          .+++++++.+.+.++++..+.       ... +|||+.++
T Consensus         1 gidig~~~i~~~l~d~-~g~ii~~~~~~~~----------~~~~~~~~~l~~~i~~~~~~~-------~~~-gIgi~~pG   61 (179)
T PF00480_consen    1 GIDIGGTSIRIALVDL-DGEIIYSESIPTP----------TSPEELLDALAELIERLLADY-------GRS-GIGISVPG   61 (179)
T ss_dssp             EEEEESSEEEEEEEET-TSCEEEEEEEEHH----------SSHHHHHHHHHHHHHHHHHHH-------TCE-EEEEEESS
T ss_pred             CEEECCCEEEEEEECC-CCCEEEEEEEECC----------CCHHHHHHHHHHHHHHHHhhc-------ccc-cEEEeccc
Confidence            7999999999999999 9999998888774          468889999999999888763       223 99999887


Q ss_pred             ceEEEEeCCCCcccc-cceeecCCCc
Q psy1582          97 ETTVVWDLNTGEPLY-NAIEQGLRIV  121 (129)
Q Consensus        97 ~g~v~~d~~~g~~~~-~~i~w~d~r~  121 (129)
                          ++|.++|.++. |...|.+.+.
T Consensus        62 ----~v~~~~g~i~~~~~~~~~~~~l   83 (179)
T PF00480_consen   62 ----IVDSEKGRIISSPNPGWENIPL   83 (179)
T ss_dssp             ----EEETTTTEEEECSSGTGTTCEH
T ss_pred             ----cCcCCCCeEEecCCCCcccCCH
Confidence                77887656654 5567888554

This family, known as ROK (Repressor, ORF, Kinase) includes the xylose operon repressor, xylR, from Bacillus subtilis, Lactobacillus pentosus and Staphylococcus xylosus; N-acetylglucosamine repressor, nagC, from Escherichia coli; glucokinase 2.7.1.2 from EC from Streptomyces coelicolor; fructokinase 2.7.1.4 from EC from Pediococcus pentosaceus, Streptococcus mutans and Zymomonas mobilis; allokinase 2.7.1.55 from EC and mlc from E. coli; and E. coli hypothetical proteins yajF and yhcI and the corresponding Haemophilus influenzae proteins. The repressor proteins (xylR and nagC) from this family possess an N-terminal region not present in the sugar kinases and which contains an helix-turn-helix DNA-binding motif.; PDB: 2GUP_A 3LM2_B 3EO3_A 2YHY_A 2YHW_A 2YI1_A 3MCP_A 1Z05_A 3HTV_A 3OHR_A ....

>PRK12408 glucokinase; Provisional

Probab=98.68  E-value=3.2e-08  Score=75.98  Aligned_cols=93  Identities=11%  Similarity=0.076  Sum_probs=55.7

Q ss_pred             CCCCCCCeEEEEeCCCCceeEEEEeCCCCcE------EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhC
Q psy1582           7 QAVAPTQIRDRLSATYHTSRVLIISALTQEE------VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH   80 (129)
Q Consensus         7 ~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~i------v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~   80 (129)
                      .+|+.+.++|++|||+|++|++++|. ++++      +...+.+++           +    ++.+.+.+++++++    
T Consensus        10 ~~~~~~~~~L~~DIGGT~i~~al~d~-~g~~~~~~~~~~~~~~~t~-----------~----~~~~~~~i~~~~~~----   69 (336)
T PRK12408         10 VAVPRPESFVAADVGGTHVRVALVCA-SPDAAKPVELLDYRTYRCA-----------D----YPSLAAILADFLAE----   69 (336)
T ss_pred             ccCcccccEEEEEcChhhhheeEEec-cCCccccccccceeEecCC-----------C----ccCHHHHHHHHHhc----
Confidence            45555667899999999999999997 7763      333232221           1    12233444455442    


Q ss_pred             CCCCCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          81 GLSRDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        81 ~~~~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                         ..++.+|||+.+++ .  ++  +|.+..+.+.|... .+..+++|
T Consensus        70 ---~~~~~~igIg~pG~-~--~~--~g~v~~~nl~w~~~-~~~l~~~~  108 (336)
T PRK12408         70 ---CAPVRRGVIASAGY-A--LD--DGRVITANLPWTLS-PEQIRAQL  108 (336)
T ss_pred             ---CCCcCEEEEEecCC-c--eE--CCEEEecCCCCccC-HHHHHHHc
Confidence               13588999999874 1  33  36666555678542 24444333

>PRK05082 N-acetylmannosamine kinase; Provisional

Probab=98.53  E-value=3.2e-07  Score=68.73  Aligned_cols=84  Identities=6%  Similarity=-0.016  Sum_probs=56.7

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      ++|||+|+|+++++++|. +|+++.+.+.+++.        ..+++.+.+.+.+.++++.          .++.+|||+.
T Consensus         3 ~lgvdig~~~i~~~l~dl-~g~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~----------~~~~~igi~~   63 (291)
T PRK05082          3 TLAIDIGGTKIAAALVGE-DGQIRQRRQIPTPA--------SQTPEALRQALSALVSPLQ----------AQADRVAVAS   63 (291)
T ss_pred             EEEEEECCCEEEEEEEcC-CCcEEEEEEecCCC--------CCCHHHHHHHHHHHHHHhh----------hcCcEEEEeC
Confidence            699999999999999999 99999877766541        1356666666666665543          2356899998


Q ss_pred             CcceEEEEeCCCCccccc-ce-eecCCCc
Q psy1582          95 QRETTVVWDLNTGEPLYN-AI-EQGLRIV  121 (129)
Q Consensus        95 ~~~g~v~~d~~~g~~~~~-~i-~w~d~r~  121 (129)
                      ++    ++|........+ .+ .|.+...
T Consensus        64 pG----~vd~~~~~~~~~~~~~~w~~~~l   88 (291)
T PRK05082         64 TG----IINDGILTALNPHNLGGLLHFPL   88 (291)
T ss_pred             cc----cccCCeeEEecCCCCccccCCCh
Confidence            76    556432222222 23 5877543

>COG2971 Predicted N-acetylglucosamine kinase [Carbohydrate transport and metabolism]

Probab=98.53  E-value=5.5e-07  Score=67.78  Aligned_cols=72  Identities=11%  Similarity=0.147  Sum_probs=56.3

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      +++.|+||||-|+|+++++|.|. +|+++.+.+..       |.....++ ++.+..+.+++.+.+.+   +|.++++|.
T Consensus         2 ~~~~~~lGVDGGGTkt~a~l~~~-~g~vlg~g~sG-------pAN~~~~~~e~A~~ni~~ai~~A~~~---aG~~~~~i~   70 (301)
T COG2971           2 EPMPYFLGVDGGGTKTRAVLADE-DGNVLGRGKSG-------PANIQLVGKEEAVRNIKDAIREALDE---AGLKPDEIA   70 (301)
T ss_pred             CCccEEEEEccCCcceEEEEEcC-CCcEEEEeccC-------CceecccchHHHHHHHHHHHHHHHHh---cCCCHHHhC
Confidence            46789999999999999999998 99999987542       22233445 88899999999998876   788888765


Q ss_pred             EEEE
Q psy1582          89 TLGI   92 (129)
Q Consensus        89 ~Igi   92 (129)
                      .+.+
T Consensus        71 ~~~a   74 (301)
T COG2971          71 AIVA   74 (301)
T ss_pred             ceee
Confidence            4433

>PRK00292 glk glucokinase; Provisional

Probab=98.52  E-value=1.8e-07  Score=71.04  Aligned_cols=89  Identities=6%  Similarity=-0.066  Sum_probs=53.7

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +++||+|||+|++|++++|...+.++.+.+.+++           +.    +.+.+.+.+++++.  .   ..++.+|||
T Consensus         2 ~~~lgiDIGgT~i~~~l~~~~~~~~~~~~~~~~~-----------~~----~~~~~~l~~~l~~~--~---~~~~~gigI   61 (316)
T PRK00292          2 KPALVGDIGGTNARFALCDWANGEIEQIKTYATA-----------DY----PSLEDAIRAYLADE--H---GVQVRSACF   61 (316)
T ss_pred             ceEEEEEcCccceEEEEEecCCCceeeeEEEecC-----------CC----CCHHHHHHHHHHhc--c---CCCCceEEE
Confidence            4789999999999999999525555666555442           11    12444444554420  1   136889999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +.+|    ++|.++  +..+.+.|.+. .+...++|
T Consensus        62 g~pG----~vd~~~--i~~~n~~w~~~-~~~l~~~~   90 (316)
T PRK00292         62 AIAG----PVDGDE--VRMTNHHWAFS-IAAMKQEL   90 (316)
T ss_pred             EEeC----cccCCE--EEecCCCcccC-HHHHHHHh
Confidence            9877    677652  33444568763 34444333

>smart00732 YqgFc Likely ribonuclease with RNase H fold

Probab=98.44  E-value=1.5e-06  Score=54.94  Aligned_cols=60  Identities=10%  Similarity=-0.085  Sum_probs=41.2

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .+||||+|+|+++++++|. +|+++...+.+..          .+.+.+++.    +.+++.+        .++.+|||+
T Consensus         2 ~ilgiD~Ggt~i~~a~~d~-~g~~~~~~~~~~~----------~~~~~~~~~----l~~~i~~--------~~~~~i~Ig   58 (99)
T smart00732        2 RVLGLDPGRKGIGVAVVDE-TGKLADPLEVIPR----------TNKEADAAR----LKKLIKK--------YQPDLIVIG   58 (99)
T ss_pred             cEEEEccCCCeEEEEEECC-CCCEecCEEEEEe----------cCcchHHHH----HHHHHHH--------hCCCEEEEe
Confidence            3799999999999999998 9998876665442          122333433    4445543        246688888


Q ss_pred             cCc
Q psy1582          94 NQR   96 (129)
Q Consensus        94 ~~~   96 (129)
                      .++
T Consensus        59 ~pg   61 (99)
T smart00732       59 LPL   61 (99)
T ss_pred             CCc
Confidence            766

YqgF proteins are likely to function as an alternative to RuvC in most bacteria, and could be the principal holliday junction resolvases in low-GC Gram-positive bacteria. In Spt6p orthologues, the catalytic residues are substituted indicating that they lack enzymatic functions.

>PF01869 BcrAD_BadFG: BadF/BadG/BcrA/BcrD ATPase family; InterPro: IPR002731 This domain is found in the BadF (O07462 from SWISSPROT) and BadG (O07463 from SWISSPROT) proteins that are two subunits of Benzoyl-CoA reductase, that may be involved in ATP hydrolysis

Probab=98.30  E-value=1.8e-06  Score=64.10  Aligned_cols=70  Identities=13%  Similarity=0.212  Sum_probs=51.0

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      ||||.|+|++|++++|. +|+++.+....-..      ....+.+...+.+.+.+++++.+   .+.++.+|..++++..
T Consensus         1 lGIDgGgTkt~~vl~d~-~g~il~~~~~~~~n------~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~~~~~g~a   70 (271)
T PF01869_consen    1 LGIDGGGTKTKAVLVDE-NGNILGRGKGGGAN------YNSVGFEEAMENIKEAIEEALSQ---AGLSPDDIAAICIGAA   70 (271)
T ss_dssp             EEEEECSSEEEEEEEET-TSEEEEEEEES-TT------HHHHHHHHHHHHHHHHHHHHHHH---HTTSTTCCCEEEEEEE
T ss_pred             CEEeeChheeeeEEEeC-CCCEEEEEEeCCCC------CCCCCcchhhhHHHHHHHHHHHH---cCCCccccceeeeeEe
Confidence            79999999999999999 99988766542211      01134567778888888888887   5777777777755543

The family also includes an activase subunit from the enzyme 2-hydroxyglutaryl-CoA dehydratase (P11568 from SWISSPROT). The hypothetical protein AQ_278 from Aquifex aeolicus O66634 from SWISSPROT contains two copies of this region suggesting that the family may structurally dimerise.; PDB: 2E2N_B 2E2Q_A 2E2P_B 2E2O_A 1ZBS_A 2CH6_A 2CH5_D 1ZC6_A 1HUX_A.

>PRK14101 bifunctional glucokinase/RpiR family transcriptional regulator; Provisional

Probab=98.26  E-value=1.1e-06  Score=72.77  Aligned_cols=88  Identities=6%  Similarity=-0.005  Sum_probs=57.1

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      ..+||+|||+|++|++++|. +|+++...++++..               ++.+.+.+++++++   .+.  .++.+|||
T Consensus        18 ~~~L~iDIGGT~ir~al~~~-~g~i~~~~~~~t~~---------------~~~~~~~i~~~l~~---~~~--~~~~~igi   76 (638)
T PRK14101         18 GPRLLADVGGTNARFALETG-PGEITQIRVYPGAD---------------YPTLTDAIRKYLKD---VKI--GRVNHAAI   76 (638)
T ss_pred             CCEEEEEcCchhheeeeecC-CCcccceeEEecCC---------------CCCHHHHHHHHHHh---cCC--CCcceEEE
Confidence            45899999999999999998 89888776655421               12345555666554   222  35889999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +.+|    ++|.+ . ...+.+.|... .+...++|
T Consensus        77 g~pG----pVd~~-~-~~~~nl~w~~~-~~~l~~~~  105 (638)
T PRK14101         77 AIAN----PVDGD-Q-VRMTNHDWSFS-IEATRRAL  105 (638)
T ss_pred             EEec----CccCC-e-eeecCCCcEec-HHHHHHHc
Confidence            9887    67754 2 22344567642 34444444

>TIGR02261 benz_CoA_red_D benzoyl-CoA reductase, bcr type, subunit D

Probab=98.25  E-value=9.5e-06  Score=60.40  Aligned_cols=72  Identities=14%  Similarity=0.257  Sum_probs=48.5

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcE-EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~i-v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +++|||+|+|++|++|+|. +++. .......++.    .   ..+|   .+...+++++++++   +|++..++.+++.
T Consensus         2 ~~~GIDiGStttK~Vlid~-~~~~~~~~~~~~~~~----~---~~~~---~~~~~~~l~~~~~~---~g~~~~~i~~i~~   67 (262)
T TIGR02261         2 ITAGIDIGTGAIKTVLFEV-DGDKEECLAKRNDRI----R---QRDP---FKLAEDAYDDLLEE---AGLAAADVAYCAT   67 (262)
T ss_pred             eEEEEEcCcccEEEEEEec-CCCeeEEEEEEEecC----C---CCCH---HHHHHHHHHHHHHH---cCCChhheEEEEE
Confidence            6899999999999999996 4542 2222222221    0   1234   23455666777766   6777789999999


Q ss_pred             ecCcceE
Q psy1582          93 TNQRETT   99 (129)
Q Consensus        93 s~~~~g~   99 (129)
                      +++|..+
T Consensus        68 TGYGR~~   74 (262)
T TIGR02261        68 TGEGESL   74 (262)
T ss_pred             ECCchhh
Confidence            9998665

This model describes the D subunit of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows sequence similarity to the A subunit (TIGR02259) and to the 2-hydroxyglutaryl-CoA dehydratase alpha chain.

>TIGR03192 benz_CoA_bzdQ benzoyl-CoA reductase, bzd-type, Q subunit

Probab=98.25  E-value=9.3e-06  Score=61.29  Aligned_cols=70  Identities=16%  Similarity=0.175  Sum_probs=50.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      .+++|||+|+|++|++|+|.  ++++.....++.          .+|.   +...+++++++++   .|+...++..++.
T Consensus        32 m~~~GIDiGStt~K~Vlld~--~~i~~~~~~~tg----------~~~~---~~a~~~l~~~l~~---~g~~~~~v~~~~~   93 (293)
T TIGR03192        32 IITCGIDVGSVSSQAVLVCD--GELYGYNSMRTG----------NNSP---DSAKNALQGIMDK---IGMKLEDINYVVG   93 (293)
T ss_pred             cEEEEEEeCchhEEEEEEeC--CEEEEEEeecCC----------CCHH---HHHHHHHHHHHHH---cCCcccceEEEEE
Confidence            58999999999999999995  467665554332          2342   3455666677766   5776678999999


Q ss_pred             ecCcceEE
Q psy1582          93 TNQRETTV  100 (129)
Q Consensus        93 s~~~~g~v  100 (129)
                      ++++.-.+
T Consensus        94 TGyGr~~~  101 (293)
T TIGR03192        94 TGYGRVNV  101 (293)
T ss_pred             ECcchhhc
Confidence            88876554

Members of this family are the Q subunit of one of two related types of four-subunit ATP-dependent benzoyl-CoA reductase. This enzyme system catalyzes the dearomatization of benzoyl-CoA, a common intermediate in pathways for the degradation for a number of different aromatic compounds, such as phenol and toluene.

>TIGR03286 methan_mark_15 putative methanogenesis marker protein 15

Probab=98.17  E-value=1.5e-05  Score=62.40  Aligned_cols=72  Identities=15%  Similarity=0.299  Sum_probs=53.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      .+++++|||+|+|++|++++|.  ++++.....++.           ++   ...+.+++++++++   +|+...+|.++
T Consensus       142 ~~g~~lGIDiGSTttK~Vl~dd--~~Ii~~~~~~t~-----------~~---~~~a~~~l~~~l~~---~Gl~~~di~~i  202 (404)
T TIGR03286       142 QEGLTLGIDSGSTTTKAVVMED--NEVIGTGWVPTT-----------KV---IESAEEAVERALEE---AGVSLEDVEAI  202 (404)
T ss_pred             cCCEEEEEEcChhheeeEEEcC--CeEEEEEEeecc-----------cH---HHHHHHHHHHHHHH---cCCCccceeEE
Confidence            4568999999999999999984  588876554331           22   33456666677766   68777899999


Q ss_pred             EEecCcceEEE
Q psy1582          91 GITNQRETTVV  101 (129)
Q Consensus        91 gis~~~~g~v~  101 (129)
                      ++++++...+.
T Consensus       203 ~~TGyGR~~i~  213 (404)
T TIGR03286       203 GTTGYGRFTIG  213 (404)
T ss_pred             EeeeecHHHHh
Confidence            99998876653

Members of this protein family, to date, are found in a completed prokaryotic genome if and only if the species is one of the archaeal methanogens. The exact function is unknown, but likely is linked to methanogenesis or a process closely connected to it. Related proteins include the BadF/BadG/BcrA/BcrD ATPase family (pfam01869), which includes an activator for (R)-2-hydroxyglutaryl-CoA dehydratase.

>PF05378 Hydant_A_N: Hydantoinase/oxoprolinase N-terminal region; InterPro: IPR008040 This domain is found at the N terminus of the hydantoinase/oxoprolinase IPR002821 from INTERPRO family

Probab=98.01  E-value=2.4e-05  Score=55.10  Aligned_cols=67  Identities=12%  Similarity=0.191  Sum_probs=51.4

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      ||||+|+|++-++++|. +..++...+.++.            |++....+.+++++++..   .+.++++|..|-+++.
T Consensus         2 igIDvGGT~TD~v~~d~-~~~~~~~~K~~Tt------------~~d~~~gi~~al~~l~~~---~~~~~~~i~~v~~gTT   65 (176)
T PF05378_consen    2 IGIDVGGTFTDAVLLDE-DTGVVATAKVPTT------------PDDPAEGILEALDALLEE---SGIDPSDIDRVRHGTT   65 (176)
T ss_pred             eeEecCCCcEEEEEEeC-CCCEEEEEEeCCC------------CcCHHHHHHHHHHhhhcc---cCCChhhCcEEEeccH
Confidence            79999999999999998 6578888877652            334466777888888765   4666788888888876


Q ss_pred             cce
Q psy1582          96 RET   98 (129)
Q Consensus        96 ~~g   98 (129)
                      ...
T Consensus        66 ~~t   68 (176)
T PF05378_consen   66 VAT   68 (176)
T ss_pred             HHH
Confidence            543

>PRK13321 pantothenate kinase; Reviewed

Probab=98.00  E-value=3.7e-05  Score=56.99  Aligned_cols=64  Identities=11%  Similarity=0.102  Sum_probs=43.3

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|+||+|+|++|++++|. + +++...+.+++.        ..+++++...+.    +++++   .+..++++.++++++
T Consensus         2 iL~IDIGnT~ik~gl~~~-~-~i~~~~~~~T~~--------~~~~~~~~~~l~----~l~~~---~~~~~~~i~~i~vss   64 (256)
T PRK13321          2 LLLIDVGNTNIKLGVFDG-D-RLLRSFRLPTDK--------SRTSDELGILLL----SLFRH---AGLDPEDIRAVVISS   64 (256)
T ss_pred             EEEEEECCCeEEEEEEEC-C-EEEEEEEEecCC--------CCCHHHHHHHHH----HHHHH---cCCChhhCCeEEEEe
Confidence            589999999999999996 4 777665555531        234555555444    44443   344456799999997


Q ss_pred             C
Q psy1582          95 Q   95 (129)
Q Consensus        95 ~   95 (129)
                      .
T Consensus        65 V   65 (256)
T PRK13321         65 V   65 (256)
T ss_pred             e
Confidence            4

>COG1924 Activator of 2-hydroxyglutaryl-CoA dehydratase (HSP70-class ATPase domain) [Lipid metabolism]

Probab=97.96  E-value=5.3e-05  Score=58.74  Aligned_cols=73  Identities=15%  Similarity=0.253  Sum_probs=49.3

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      +...++||||.|+|++|++|++. +.+++........          ..|.     ...++++++++   .+....+|.+
T Consensus       132 ~~~~~~LGID~GSTtTK~VLm~d-~~~I~~~~~~~t~----------g~p~-----~~~~l~~~le~---l~~~~~~I~~  192 (396)
T COG1924         132 YQGMYTLGIDSGSTTTKAVLMED-GKEILYGFYVSTK----------GRPI-----AEKALKEALEE---LGEKLEEILG  192 (396)
T ss_pred             hcCcEEEEEecCCcceeEEEEeC-CCeEEEEEEEcCC----------CChh-----HHHHHHHHHHH---cccChheeee
Confidence            44678999999999999999996 5544443333221          1232     23445556555   4555578999


Q ss_pred             EEEecCcceEEE
Q psy1582          90 LGITNQRETTVV  101 (129)
Q Consensus        90 Igis~~~~g~v~  101 (129)
                      +|++++|.-++-
T Consensus       193 ~~~TGYGR~~v~  204 (396)
T COG1924         193 LGVTGYGRNLVG  204 (396)
T ss_pred             eeeecccHHHhh
Confidence            999999876554

>PRK13318 pantothenate kinase; Reviewed

Probab=97.95  E-value=5.3e-05  Score=56.18  Aligned_cols=64  Identities=11%  Similarity=0.078  Sum_probs=43.3

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|+||+|+|++|.+++|  +++++.+.+.+++.        ...++++..    .++++++.   .+.+..++.+|++|+
T Consensus         2 iL~IDIGnT~iK~al~d--~g~i~~~~~~~t~~--------~~~~~~~~~----~l~~l~~~---~~~~~~~i~~I~iss   64 (258)
T PRK13318          2 LLAIDVGNTNTVFGLYE--GGKLVAHWRISTDS--------RRTADEYGV----WLKQLLGL---SGLDPEDITGIIISS   64 (258)
T ss_pred             EEEEEECCCcEEEEEEE--CCEEEEEEEEeCCC--------CCCHHHHHH----HHHHHHHH---cCCCcccCceEEEEE
Confidence            68999999999999999  47888766665531        123444443    34445444   344446799999998


Q ss_pred             C
Q psy1582          95 Q   95 (129)
Q Consensus        95 ~   95 (129)
                      .
T Consensus        65 V   65 (258)
T PRK13318         65 V   65 (258)
T ss_pred             e
Confidence            3

>PF14574 DUF4445: Domain of unknown function (DUF4445); PDB: 3ZYY_X

Probab=97.88  E-value=4.3e-05  Score=60.29  Aligned_cols=81  Identities=19%  Similarity=0.160  Sum_probs=49.0

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCe------EEE-C-HHHHHHHHHHHHHHHHHHHH-hCCCCC
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGW------AEQ-D-PMEILQAVQTTMDRAIEKLS-AHGLSR   84 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~------~~~-~-~~~~~~~i~~~~~~~~~~~~-~~~~~~   84 (129)
                      |-++||||||++.+.++|..+|++++..+...+......+.      ... + .+.+-+.+.+.+++++.++- ++++++
T Consensus         2 ~GiAvDiGTTti~~~L~dl~~G~~l~~~s~~NpQ~~~GaDViSRI~~a~~~~~~~~L~~~i~~~i~~li~~l~~~~gi~~   81 (412)
T PF14574_consen    2 YGIAVDIGTTTIAAYLVDLETGEVLATASFLNPQRAYGADVISRISYALSPEGLEELQRLIRETINELIEELLEKAGISP   81 (412)
T ss_dssp             EEEEEEE-SSEEEEEEEETTT--EEEEEEEE-GGGGT-SSHHHHHHHHH-TTHHHHHHHHHHHHHHHHHHHHHHHHT--G
T ss_pred             EEEEEEcchhheeeEEEECCCCCEEEeecccCCCCCcchHHHHHHHHhcCCchHHHHHHHHHHHHHHHHHHHHHHcCCCH
Confidence            67899999999999999987899999998888765332221      111 1 23333344444444444331 268889


Q ss_pred             CCeeEEEEec
Q psy1582          85 DDIVTLGITN   94 (129)
Q Consensus        85 ~~I~~Igis~   94 (129)
                      ++|..+.+++
T Consensus        82 ~~I~~i~i~G   91 (412)
T PF14574_consen   82 EDIYEIVIVG   91 (412)
T ss_dssp             GGEEEEEEEE
T ss_pred             HHeEEEEEEe
Confidence            9999888885

>PF00349 Hexokinase_1: Hexokinase; InterPro: IPR022672 Hexokinase is an important enzyme that catalyses the ATP-dependent conversion of aldo- and keto-hexose sugars to the hexose-6-phosphate (H6P)

Probab=97.77  E-value=0.00028  Score=50.88  Aligned_cols=83  Identities=17%  Similarity=0.175  Sum_probs=51.3

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc-EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCC-
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE-EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-   82 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~-iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-   82 (129)
                      .|.+... +.+|+||+|+|++|++++.. .|. .+...+..+.+.  . .......+++++.|.+++.+.+++   .+. 
T Consensus        56 ~P~G~E~-G~~LalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~ip--~-~~~~~~~~~lFd~ia~~i~~f~~~---~~~~  127 (206)
T PF00349_consen   56 LPTGNEK-GDFLALDLGGTNLRVALVEL-SGNGKVEIEQEKYKIP--E-ELMNGSGEELFDFIADCIAEFLKE---HNLE  127 (206)
T ss_dssp             STTSTTE-EEEEEEEESSSSEEEEEEEE-ESSSEEEEEEEEEE----H-HHHTSBHHHHHHHHHHHHHHHHHH---TTTT
T ss_pred             CCCCCCC-ceEEEEeecCcEEEEEEEEE-cCCCCceeeeccccCC--h-HHhcCCcccHHHHHHHHHHHHHHH---hccc
Confidence            4444433 45799999999999999998 565 333333333211  0 001123488999999999999886   333 


Q ss_pred             CCCCeeEEEEecC
Q psy1582          83 SRDDIVTLGITNQ   95 (129)
Q Consensus        83 ~~~~I~~Igis~~   95 (129)
                      +..+..-+|++..
T Consensus       128 ~~~~~l~lGfTFS  140 (206)
T PF00349_consen  128 SRDEKLPLGFTFS  140 (206)
T ss_dssp             STTSEEEEEEEEE
T ss_pred             ccccccceEEEEE
Confidence            2345555666643

The enzyme can catalyse this reaction on glucose, fructose, sorbitol and glucosamine, and as such is the first step in a number of metabolic pathways []. The addition of a phosphate group to the sugar acts to trap it in a cell, since the negatively charged phosphate cannot easily traverse the plasma membrane. The enzyme is widely distributed in eukaryotes. There are three isozymes of hexokinase in yeast (PI, PII and glucokinase): isozymes PI and PII phosphorylate both aldo- and keto-sugars; glucokinase is specific for aldo-hexoses. All three isozymes contain two domains []. Structural studies of yeast hexokinase reveal a well-defined catalytic pocket that binds ATP and hexose, allowing easy transfer of the phosphate from ATP to the sugar []. Vertebrates contain four hexokinase isozymes, designated I to IV, where types I to III contain a duplication of the two-domain yeast-type hexokinases. Both the N- and C-terminal halves bind hexose and H6P, though in types I an III only the C-terminal half supports catalysis, while both halves support catalysis in type II. The N-terminal half is the regulatory region. Type IV hexokinase is similar to the yeast enzyme in containing only the two domains, and is sometimes incorrectly referred to as glucokinase. The different vertebrate isozymes differ in their catalysis, localisation and regulation, thereby contributing to the different patterns of glucose metabolism in different tissues []. Whereas types I to III can phosphorylate a variety of hexose sugars and are inhibited by glucose-6-phosphate (G6P), type IV is specific for glucose and shows no G6P inhibition. Type I enzyme may have a catabolic function, producing H6P for energy production in glycolysis; it is bound to the mitochondrial membrane, which enables the coordination of glycolysis with the TCA cycle. Types II and III enzyme may have anabolic functions, providing H6P for glycogen or lipid synthesis. Type IV enzyme is found in the liver and pancreatic beta-cells, where it is controlled by insulin (activation) and glucagon (inhibition). In pancreatic beta-cells, type IV enzyme acts as a glucose sensor to modify insulin secretion. Mutations in type IV hexokinase have been associated with diabetes mellitus. Hexokinase (2.7.1.1 from EC), a fructose and glucose phosphorylating enzyme, contains two structurally similar domains represented by this family and PF03727 from PFAM. Some hexokinases have two copies of each of these domains. This entry represents the N-terminal domain.; GO: 0005524 ATP binding, 0016773 phosphotransferase activity, alcohol group as acceptor, 0005975 carbohydrate metabolic process; PDB: 3O1W_A 3O6W_A 3O4W_B 3O08_B 3O80_A 3O5B_A 3O8M_A 3O1B_A 1BG3_A 4DHY_A ....

>TIGR02259 benz_CoA_red_A benzoyl-CoA reductase, bcr type, subunit A

Probab=97.55  E-value=0.00023  Score=55.94  Aligned_cols=33  Identities=6%  Similarity=0.031  Sum_probs=28.7

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      ++|++|||+|+|++|++|+|. +++++.....+.
T Consensus         1 m~y~lGIDIGSTsTKaVVmd~-~g~Il~~~i~pT   33 (432)
T TIGR02259         1 MECFVGIDLGSTTTKAVLMDD-KGEVIGRGITNS   33 (432)
T ss_pred             CceEEEEEcCchhEEEEEEcC-CCcEEEEEecCC
Confidence            358999999999999999998 778988777665

This model describes A, or gamma, subunit of the bcr type of benzoyl-CoA reductase, a 4-subunit enzyme. Many aromatic compounds are metabolized by way of benzoyl-CoA. This family shows strong sequence similarity to the 2-hydroxyglutaryl-CoA dehydratase alpha chain and to subunits of different types of benzoyl-CoA reductase (such as the bzd type).

>KOG1794|consensus

Probab=97.43  E-value=0.0013  Score=49.65  Aligned_cols=75  Identities=12%  Similarity=0.105  Sum_probs=57.0

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC-eeEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD-IVTL   90 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~-I~~I   90 (129)
                      +.++.||+-|.|.+|.+++|. .+.++.+..-....+.      ..+....-+++.+.++++..+   +|.+++. ++++
T Consensus         2 ~~~y~GvEGgaT~s~~Vivd~-~~~~~~~a~~~~Tnh~------~ig~~~~~~rie~~i~~A~~k---~g~d~~~~lr~l   71 (336)
T KOG1794|consen    2 KDFYGGVEGGATCSRLVIVDE-DGTILGRAVGGGTNHW------LIGSTTCASRIEDMIREAKEK---AGWDKKGPLRSL   71 (336)
T ss_pred             CceeEeecCCcceeEEEEECC-CCCEeeEeeccccccc------cCCchHHHHHHHHHHHHHHhh---cCCCccCcccee
Confidence            568999999999999999998 9999998765443221      123455666777777777666   7998887 8888


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      |++..+
T Consensus        72 gL~lSg   77 (336)
T KOG1794|consen   72 GLGLSG   77 (336)
T ss_pred             eeeccc
Confidence            888654

>PLN02914 hexokinase

Probab=97.37  E-value=0.002  Score=52.05  Aligned_cols=66  Identities=14%  Similarity=0.152  Sum_probs=45.3

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      |-+.. .+.+++||+|+|+.|++++.. .|+   ++...+..+++  | ........+++|+.|.+++.+.+++
T Consensus        89 PtG~E-~G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~l~~gt~~eLFdfIA~~i~~fl~~  157 (490)
T PLN02914         89 PSGNE-KGLFYALDLGGTNFRVLRVQL-GGKDERVIATEFEQVSI--P-QELMFGTSEELFDFIASGLANFVAK  157 (490)
T ss_pred             CCCCe-eeEEEEEecCCceEEEEEEEe-cCCCCceeeeeEEEecC--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            44443 356799999999999999998 663   34433333332  1 1223345688999999999999875

>smart00842 FtsA Cell division protein FtsA

Probab=97.33  E-value=0.0046  Score=43.55  Aligned_cols=74  Identities=14%  Similarity=0.139  Sum_probs=42.2

Q ss_pred             EEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          15 RDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++|+|||++++|+++.... +|  ++++....|.  .--..|.. .|.+...+.+.++++++=+.   ++...+++ .++
T Consensus         1 ~~~lDIGs~~ik~vv~~~~~~~~~~i~g~~~~~s--~gi~~G~I-~d~~~~~~~I~~ai~~ae~~---~~~~i~~V-~v~   73 (187)
T smart00842        1 IVGLDIGTSKIKALVAEVDEDGEINVIGVGEVPS--RGIRKGVI-VDIEAAARAIREAVEEAERM---AGVKIDSV-YVG   73 (187)
T ss_pred             CEEEEeccceEEEEEEEEcCCCCEEEEEEEEecC--CCccCcEE-ECHHHHHHHHHHHHHHHHHH---hCCcccEE-EEE
Confidence            4799999999999999742 34  4444443321  11123433 57777777777776665433   45443322 344


Q ss_pred             EecC
Q psy1582          92 ITNQ   95 (129)
Q Consensus        92 is~~   95 (129)
                      +++.
T Consensus        74 i~g~   77 (187)
T smart00842       74 ISGR   77 (187)
T ss_pred             EcCC
Confidence            4443

FtsA is essential for bacterial cell division, and co-localizes to the septal ring with FtsZ. It has been suggested that the interaction of FtsA-FtsZ has arisen through coevolution in different bacterial strains PUBMED:9352931.

>TIGR00749 glk glucokinase, proteobacterial type

Probab=97.32  E-value=0.00034  Score=53.25  Aligned_cols=24  Identities=8%  Similarity=-0.033  Sum_probs=20.4

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      |.+|||+|++|++++|. ++.++.+
T Consensus         1 l~~DIGGT~i~~glvd~-~g~~l~~   24 (316)
T TIGR00749         1 LVGDIGGTNARLALCEI-APGEISQ   24 (316)
T ss_pred             CeEecCcceeeEEEEec-CCCceee
Confidence            57999999999999998 7766654

This model represents glucokinase of E. coli and close homologs, mostly from other proteobacteria, presumed to have equivalent function. This glucokinase is more closely related to a number of uncharacterized paralogs than to the glucokinase glcK (fromerly yqgR) of Bacillus subtilis and its closest homologs, so the two sets are represented by separate models.

>PRK09472 ftsA cell division protein FtsA; Reviewed

Probab=97.28  E-value=0.0065  Score=48.14  Aligned_cols=77  Identities=14%  Similarity=0.122  Sum_probs=45.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          11 PTQIRDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      ...+++|+||||+++|+++.... ++  ++++....|..  --..| .-.|.+...+++.++++++=..   +|....++
T Consensus         6 ~~~~i~~lDIGsskv~~vv~~~~~~~~~~i~g~~~~~s~--gi~~G-~I~d~~~~~~aI~~av~~ae~~---~g~~i~~v   79 (420)
T PRK09472          6 DRKLVVGLEIGTAKVAALVGEVLPDGMVNIIGVGSCPSR--GMDKG-GVNDLESVVKCVQRAIDQAELM---ADCQISSV   79 (420)
T ss_pred             CCCEEEEEEcccceEEEEEEEEcCCCCEEEEEEEEccCC--CccCC-EEEcHHHHHHHHHHHHHHHHHH---hCCcccEE
Confidence            34689999999999999887621 44  34444444321  11234 3357777777777777665332   45443333


Q ss_pred             eEEEEec
Q psy1582          88 VTLGITN   94 (129)
Q Consensus        88 ~~Igis~   94 (129)
                      . +++++
T Consensus        80 ~-v~i~g   85 (420)
T PRK09472         80 Y-LALSG   85 (420)
T ss_pred             E-EEecC
Confidence            2 45554

>PLN02405 hexokinase

Probab=97.24  E-value=0.0046  Score=50.12  Aligned_cols=67  Identities=12%  Similarity=0.100  Sum_probs=46.0

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      -|.+... +.+++||+|+|+.|++++.. .|+   .+...+..+++  | +.......+++|+.|.+++.+.+++
T Consensus        88 lPtG~E~-G~flAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~i--p-~~~~~gt~~~LFdfIA~~i~~fl~~  157 (497)
T PLN02405         88 LPSGDEK-GLFYALDLGGTNFRVLRVLL-GGKDGRVVKQEFEEVSI--P-PHLMTGSSDALFDFIAAALAKFVAT  157 (497)
T ss_pred             CCCCCcc-eeEEEEecCCceEEEEEEEE-cCCCCceeEEEEEEeec--C-hhhccCCHHHHHHHHHHHHHHHHHh
Confidence            3444443 46799999999999999998 663   34433333332  1 1223346788999999999999875

>PLN02596 hexokinase-like

Probab=97.23  E-value=0.003  Score=51.04  Aligned_cols=66  Identities=11%  Similarity=0.056  Sum_probs=44.3

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      |.+...+ .+|+||+|+|+.|++++.. .|+   +....+..+++  | ........+++|+.|.+++.+.+++
T Consensus        90 PtG~E~G-~yLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~I--p-~~l~~~t~~eLFd~IA~~i~~fl~~  158 (490)
T PLN02596         90 PSGDEKG-LYYGLNLRGSNFLLLRARL-GGKNEPISDLYREEISI--P-SNVLNGTSQELFDYIALELAKFVAE  158 (490)
T ss_pred             CCCCcce-EEEEEeeCCceEEEEEEEE-cCCCCceEEEEEEEecC--C-hHhhcCCHHHHHHHHHHHHHHHHHh
Confidence            4455444 4599999999999999998 664   23332333322  1 1112345688999999999999875

>TIGR02707 butyr_kinase butyrate kinase

Probab=97.09  E-value=0.003  Score=49.02  Aligned_cols=67  Identities=6%  Similarity=0.053  Sum_probs=42.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHH---HHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQ---TTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~---~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      +|.|..|+|++|++||+. +++++.+......-   .-    .+++.+.+++.   +.+.+++++   .++...+|.+|+
T Consensus         2 il~in~Gsts~k~alf~~-~~~~~~~~~~~~~~---~~----~~~~~~~~q~~~r~~~i~~~l~~---~~~~~~~i~av~   70 (351)
T TIGR02707         2 ILVINPGSTSTKLAVFED-ERPLFEETLRHSVE---EL----GRFKNVIDQFEFRKQVILQFLEE---HGISISKLDAVV   70 (351)
T ss_pred             EEEEecCchhheEEEEeC-CCceeeeeecCCHH---Hh----cccccHHHHHHHHHHHHHHHHHH---cCCCcccccEEE
Confidence            689999999999999999 88877654433310   00    12233444555   444444444   566667788884


Q ss_pred             E
Q psy1582          92 I   92 (129)
Q Consensus        92 i   92 (129)
                      -
T Consensus        71 ~   71 (351)
T TIGR02707        71 G   71 (351)
T ss_pred             E
Confidence            3

This model represents an enzyme family in which members are designated either butryate kinase or branched-chain carboxylic acid kinase. The EC designation 2.7.2.7 describes an enzyme with relatively broad specificity; gene products whose context suggests a role in metabolism of aliphatic amino acids are likely to act as branched-chain carboxylic acid kinase. The gene typically found adjacent, ptb (phosphate butyryltransferase), likewise encodes an enzyme that may have a broad specificity that includes a role in aliphatic amino acid cabolism.

>PTZ00288 glucokinase 1; Provisional

Probab=97.09  E-value=0.0068  Score=47.97  Aligned_cols=57  Identities=12%  Similarity=0.047  Sum_probs=36.1

Q ss_pred             CCeEEEEeCCCCceeEEEEeC--CCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHH
Q psy1582          12 TQIRDRLSATYHTSRVLIISA--LTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE   75 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~--~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~   75 (129)
                      .+|++|+|||+|++|+++++.  .++..+...+++++..       ..+..+.++.+.+.++++.+
T Consensus        25 ~~~~~~~DiGgt~~R~~~~~~~~~~~~~~~~~~~~~~~~-------~~~~~~~~~~~~~~~~~l~~   83 (405)
T PTZ00288         25 GPIFVGCDVGGTNARVGFAREVQHDDSGVHIIYVRFNVT-------KTDIRELLEFFDEVLQKLKK   83 (405)
T ss_pred             CCeEEEEEecCCceEEEEEeccCCCCCceeEEEEecccc-------cccHHHHHHHHHHHHHHHHh
Confidence            468999999999999999985  1222344444444310       13555566666666665554

>TIGR01174 ftsA cell division protein FtsA

Probab=97.02  E-value=0.017  Score=44.83  Aligned_cols=74  Identities=12%  Similarity=0.091  Sum_probs=42.5

Q ss_pred             eEEEEeCCCCceeEEEEeCC-CC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          14 IRDRLSATYHTSRVLIISAL-TQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~-~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +++|||||++++|+++.... ++  ++++....|..  .-..|.. .|++.+.+.+.++++++-+.   ++...++ ..+
T Consensus         1 ~~~~lDIGs~~ik~vv~~~~~~~~~~i~~~~~~~~~--gi~~G~I-~d~~~~~~~i~~al~~~e~~---~~~~i~~-v~~   73 (371)
T TIGR01174         1 LIVGLDIGTSKICAIVAEVLEDGELNIIGVGTHPSR--GIKKGVI-NDIEAAVGSIQRAIEAAELM---AGCEIRS-VIV   73 (371)
T ss_pred             CEEEEEeccceEEEEEEEEcCCCCEEEEEEEEecCC--CccCcEE-EcHHHHHHHHHHHHHHHHHH---hCCcccE-EEE
Confidence            36899999999999997641 34  34444443321  1123433 57777777777776665433   4544333 234


Q ss_pred             EEec
Q psy1582          91 GITN   94 (129)
Q Consensus        91 gis~   94 (129)
                      ++++
T Consensus        74 ~v~g   77 (371)
T TIGR01174        74 SISG   77 (371)
T ss_pred             EEcc
Confidence            5544

This bacterial cell division protein interacts with FtsZ, the bacterial homolog of tubulin. It is an ATP-binding protein and shows structural similarities to actin and heat shock cognate protein 70.

>PRK15080 ethanolamine utilization protein EutJ; Provisional

Probab=97.01  E-value=0.017  Score=43.09  Aligned_cols=57  Identities=7%  Similarity=0.034  Sum_probs=37.2

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHH
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMD   71 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~   71 (129)
                      ...+++||||||+++|+++.+. ++++++....+-..  -..|. -.|.+.....+...++
T Consensus        22 ~~~~~~~iDiGSssi~~vv~~~-~~~~~~~~~~~~~~--vr~G~-i~di~~a~~~i~~~~~   78 (267)
T PRK15080         22 ESPLKVGVDLGTANIVLAVLDE-DGQPVAGALEWADV--VRDGI-VVDFIGAVTIVRRLKA   78 (267)
T ss_pred             CCCEEEEEEccCceEEEEEEcC-CCCEEEEEeccccc--cCCCE-EeeHHHHHHHHHHHHH
Confidence            4679999999999999999987 77766655443321  23354 3455555544444443

>PLN02362 hexokinase

Probab=96.98  E-value=0.0085  Score=48.71  Aligned_cols=65  Identities=12%  Similarity=0.104  Sum_probs=44.5

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEE--EEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVS--HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~--~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      -|.+... +.+++||+|+|+.|++++.. .|+   ++..  .+++.+.     .......+++|+.|.+++.+.+++
T Consensus        88 lPtG~E~-G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~Ip~-----~l~~~~~~eLFd~IA~~i~~fl~~  157 (509)
T PLN02362         88 LPTGSEI-GTYYALDLGGTNFRVLRVQL-GGQRSSILSQDVERHPIPQ-----HLMNSTSEVLFDFIASSLKQFVEK  157 (509)
T ss_pred             CCCCCcc-eeEEEEecCCceEEEEEEEe-cCCCcceeeceeEEEecCh-----hhccCCHHHHHHHHHHHHHHHHHh
Confidence            3555543 45789999999999999998 663   2222  2333321     112346788999999999999876

>PTZ00107 hexokinase; Provisional

Probab=96.94  E-value=0.011  Score=47.64  Aligned_cols=69  Identities=6%  Similarity=0.138  Sum_probs=43.5

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc-EEEEEE--eeecccc---CCCCe-EEECHHHHHHHHHHHHHHHHHH
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE-EVVSHS--MDISTIS---PQEGW-AEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~-iv~~~~--~~~~~~~---~~~g~-~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      |.+.. .+.+|+||+|+|+.|++++.. .|. .....+  +..+...   +.+.. .+...+++|+.+.+++.+.+++
T Consensus        68 PtG~E-~G~fLAlDlGGTN~RV~~V~L-~g~~~~~~~~~~~~ip~~~~~~~~~~~~k~~t~~~lFd~IA~~i~~fl~~  143 (464)
T PTZ00107         68 PTGKE-KGVYYAIDFGGTNFRAVRVSL-RGGGKMERTQSKFSLPKSALLGEKGLLDKKATATDLFDHIAKSIKKMMEE  143 (464)
T ss_pred             CCCCc-cceEEEEecCCceEEEEEEEe-CCCCceeeEEEEEeCCHHHhccccccccccCCHHHHHHHHHHHHHHHHHh
Confidence            44443 345789999999999999998 664 322222  2222110   11110 1125788999999999999876

>PF13941 MutL: MutL protein

Probab=96.86  E-value=0.0072  Score=48.49  Aligned_cols=72  Identities=8%  Similarity=0.025  Sum_probs=47.4

Q ss_pred             EEEEeCCCCceeEEEEe--CCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCC--CCeeEE
Q psy1582          15 RDRLSATYHTSRVLIIS--ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR--DDIVTL   90 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d--~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~--~~I~~I   90 (129)
                      +|.+|+|+|.+|+.+||  ..+.+++++++.|+..        +  +.++...+..+++++-+.   .+..+  .-..-+
T Consensus         2 ~L~~DiGST~Tk~~l~d~~~~~~~~ig~a~apTTv--------~--~~Dv~~G~~~A~~~l~~~---~~~~~~~~~~~~l   68 (457)
T PF13941_consen    2 VLVVDIGSTYTKVTLFDLVDGEPRLIGQAEAPTTV--------E--PGDVTIGLNNALEQLEEQ---TPASPDDGYDKVL   68 (457)
T ss_pred             EEEEEeCCcceEEeEEeccCCccEEEEEEeCCCCc--------C--cccHHHHHHHHHHHHHHh---cCCCcccCceEEE
Confidence            58899999999999999  4477888888887752        1  234566777777776554   23221  223445


Q ss_pred             EEecCcceE
Q psy1582          91 GITNQRETT   99 (129)
Q Consensus        91 gis~~~~g~   99 (129)
                      .+|+...|+
T Consensus        69 a~SSAaGGL   77 (457)
T PF13941_consen   69 ACSSAAGGL   77 (457)
T ss_pred             EECCCCCcc
Confidence            566655443

>PRK13317 pantothenate kinase; Provisional

Probab=96.80  E-value=0.007  Score=45.55  Aligned_cols=27  Identities=4%  Similarity=0.204  Sum_probs=23.0

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      .+.+|||+|+|.+|.+++|. ++++..+
T Consensus         2 ~~~iGIDiGstt~K~v~~~~-~~~~~~~   28 (277)
T PRK13317          2 EMKIGIDAGGTLTKIVYLEE-KKQRTFK   28 (277)
T ss_pred             CceEEEEeCcccEEEEEEcC-CCeEEEE
Confidence            47899999999999999998 7766643

>PRK13324 pantothenate kinase; Reviewed

Probab=96.29  E-value=0.032  Score=41.63  Aligned_cols=66  Identities=9%  Similarity=0.067  Sum_probs=38.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|.||+|.|++|.+++|.  ++++...+.++..       .....+++...    +..++..   .+....++..+.+|+
T Consensus         2 iL~iDiGNT~ik~gl~~~--~~~~~~~r~~t~~-------~~~t~de~~~~----l~~~~~~---~~~~~~~i~~viisS   65 (258)
T PRK13324          2 LLVMDMGNSHIHIGVFDG--DRIVSQIRYATSS-------VDSTSDQMGVF----LRQALRE---NSVDLGKIDGCGISS   65 (258)
T ss_pred             EEEEEeCCCceEEEEEEC--CEEEEEEEEecCc-------cccchHHHHHH----HHHHHHh---cCCCccCCCeEEEEe
Confidence            689999999999999995  4566544443310       11223333333    3344433   344455677777776


Q ss_pred             Cc
Q psy1582          95 QR   96 (129)
Q Consensus        95 ~~   96 (129)
                      ..
T Consensus        66 Vv   67 (258)
T PRK13324         66 VV   67 (258)
T ss_pred             Cc
Confidence            43

>COG0849 ftsA Cell division ATPase FtsA [Cell division and chromosome partitioning]

Probab=96.27  E-value=0.084  Score=42.05  Aligned_cols=68  Identities=10%  Similarity=0.010  Sum_probs=38.3

Q ss_pred             eEEEEeCCCCceeEEEEeCCCC-cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1582          14 IRDRLSATYHTSRVLIISALTQ-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD   85 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g-~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (129)
                      +++|+||||+++++.+-....+ ++-....-..+..--..|.. .|.+...+.+.++++++=..   +|....
T Consensus         7 ~iv~LDIGTskV~~lVge~~~~g~i~iig~g~~~SrGik~G~I-~di~~~~~sI~~av~~AE~m---ag~~i~   75 (418)
T COG0849           7 LIVGLDIGTSKVKALVGELRPDGRLNIIGVGSHPSRGIKKGVI-VDLDAAAQSIKKAVEAAERM---AGCEIK   75 (418)
T ss_pred             eEEEEEccCcEEEEEEEEEcCCCeEEEEeeecccCcccccceE-EcHHHHHHHHHHHHHHHHHh---cCCCcc
Confidence            8999999999999998875333 22222211111111123433 47776666666666555332   565443

>TIGR03123 one_C_unchar_1 probable H4MPT-linked C1 transfer pathway protein

Probab=95.85  E-value=0.014  Score=44.86  Aligned_cols=30  Identities=3%  Similarity=-0.071  Sum_probs=25.4

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDIS   46 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~   46 (129)
                      ||+|||+-++|++++|. +|+++...+.++|
T Consensus         1 ~G~DiGGA~~K~a~~~~-~g~~~~v~~~~~p   30 (318)
T TIGR03123         1 LGIDIGGANTKAAELDE-DGRIKEVHQLYCP   30 (318)
T ss_pred             CccccccceeeeEEecC-CCceeEEEEecCc
Confidence            68999999999999998 8888876666665

This protein family was identified, by the method of partial phylogenetic profiling, as related to the use of tetrahydromethanopterin (H4MPT) as a C-1 carrier. Characteristic markers of the H4MPT-linked C1 transfer pathway include formylmethanofuran dehydrogenase subunits, methenyltetrahydromethanopterin cyclohydrolase, etc. Tetrahydromethanopterin, a tetrahydrofolate analog, occurs in methanogenic archaea, bacterial methanotrophs, planctomycetes, and a few other lineages.

>PF02685 Glucokinase: Glucokinase; InterPro: IPR003836 Glucokinases 2

Probab=95.65  E-value=0.062  Score=41.21  Aligned_cols=21  Identities=5%  Similarity=-0.083  Sum_probs=17.6

Q ss_pred             EEEeCCCCceeEEEEeCCCCcE
Q psy1582          16 DRLSATYHTSRVLIISALTQEE   37 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~i   37 (129)
                      |.-|||+|++|.++++. .+..
T Consensus         1 Lv~DIGGTn~Rlal~~~-~~~~   21 (316)
T PF02685_consen    1 LVADIGGTNTRLALAEP-DGGP   21 (316)
T ss_dssp             EEEEEETTEEEEEEEEC-TCGG
T ss_pred             CeEEeCcccEEEEEEEc-CCCC
Confidence            56799999999999998 4543

7.1.2 from EC are found in invertebrates and microorganisms and are highly specific for glucose. These enzymes phosphorylate glucose using ATP as a donor to give glucose-6-phosphate and ADP [].; GO: 0004340 glucokinase activity, 0005524 ATP binding, 0006096 glycolysis, 0051156 glucose 6-phosphate metabolic process; PDB: 1SZ2_B 1Q18_B 2Q2R_B.

>TIGR00555 panK_eukar pantothenate kinase, eukaryotic/staphyloccocal type

Probab=95.65  E-value=0.11  Score=39.28  Aligned_cols=25  Identities=8%  Similarity=-0.033  Sum_probs=21.5

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      .+|||+|+|.+|.+.+|. +++++..
T Consensus         2 ~iGiDiGgT~~Kiv~~~~-~~~~~f~   26 (279)
T TIGR00555         2 RIGIDIGGTLIKVVYEEP-KGRRKFK   26 (279)
T ss_pred             eEEEEeCcceEEEEEEcC-CCcEEEE
Confidence            589999999999999988 8877643

This model describes a eukaryotic form of pantothenate kinase, characterized from the fungus Aspergillus nidulans and with similar forms known in several other eukaryotes. It also includes forms from several Gram-positive bacteria suggested to have originated from the eukaryotic form by lateral transfer. It differs in a number of biochemical properties (such as inhibition by acetyl-CoA) from most bacterial CoaA and lacks sequence similarity. This enzyme is the key regulatory step in the biosynthesis of coenzyme A (CoA).

>PRK09604 UGMP family protein; Validated

Probab=95.63  E-value=0.12  Score=39.79  Aligned_cols=81  Identities=10%  Similarity=0.151  Sum_probs=52.7

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeee-ccccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDI-STISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~-~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++||||-.+..+.++|+|. +++++....... ....+..|.+. .....-.+.+...+++++++   +++++.+|.+|+
T Consensus         2 ~iLgIdTS~~~~sval~~~-~~~il~~~~~~~~~~~~~~~Gi~P~~a~~~H~~~l~~~i~~~L~~---~~~~~~did~ia   77 (332)
T PRK09604          2 LILGIETSCDETSVAVVDD-GRGLLSNVVASQIDLHARYGGVVPELASRAHVENIVPLIEEALKE---AGLTLEDIDAIA   77 (332)
T ss_pred             eEEEEEccccceEEEEEEC-CCcEEEEEEecchhcccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence            6899999888899999997 668886554322 11111123211 11233445666777777776   788899999999


Q ss_pred             EecCcceE
Q psy1582          92 ITNQRETT   99 (129)
Q Consensus        92 is~~~~g~   99 (129)
                      ++. +||.
T Consensus        78 vt~-GPG~   84 (332)
T PRK09604         78 VTA-GPGL   84 (332)
T ss_pred             Eec-CCCc
Confidence            986 4443

>PTZ00340 O-sialoglycoprotein endopeptidase-like protein; Provisional

Probab=95.58  E-value=0.12  Score=40.17  Aligned_cols=79  Identities=13%  Similarity=0.166  Sum_probs=54.7

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCC-CeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQE-GWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~-g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      .+||||-....+.++|+|. +|+++........  .+.. |.+.. ....-.+.+...+++++++   +++.+++|.+|+
T Consensus         2 ~iLgIETScd~tsvAl~~~-~~~il~~~~~sq~--~~~G~GvvP~~a~r~H~~~l~~~i~~~l~~---a~~~~~did~Ia   75 (345)
T PTZ00340          2 LALGIEGSANKLGVGIVTS-DGEILSNVRETYI--TPPGTGFLPRETAQHHREHILSLVKEALEE---AKITPSDISLIC   75 (345)
T ss_pred             eEEEEEccchhhEEEEEEC-CCcEEEEEEeecc--ccCCCCcCchHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEE
Confidence            5899999999999999997 7788776544332  1112 33221 2233445666677777776   788899999999


Q ss_pred             EecCcceE
Q psy1582          92 ITNQRETT   99 (129)
Q Consensus        92 is~~~~g~   99 (129)
                      ++. +||.
T Consensus        76 vt~-GPGl   82 (345)
T PTZ00340         76 YTK-GPGM   82 (345)
T ss_pred             Eec-CCCc
Confidence            986 6775

>PRK03011 butyrate kinase; Provisional

Probab=95.51  E-value=0.027  Score=43.94  Aligned_cols=70  Identities=7%  Similarity=0.142  Sum_probs=39.5

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      .+|.|.-|+||+|.++|+. + +.+.+....++......      -..++++..-..+.+++.|++.++..+++.+|+
T Consensus         3 ~il~inpgststk~a~~~~-~-~~~~~~~~~h~~~~~~~------~~~~~~q~~~r~~~i~~~l~~~g~~~~~l~av~   72 (358)
T PRK03011          3 RILVINPGSTSTKIAVFED-E-KPIFEETLRHSAEELEK------FKTIIDQYEFRKQAILDFLKEHGIDLSELDAVV   72 (358)
T ss_pred             EEEEEcCCCchheEEEEcC-C-ceeeeeccccCHHHHhc------CCCccchHHHHHHHHHHHHHHcCCChhcceEEE
Confidence            5899999999999999985 4 55655555554321100      011122222222222333333677778888883

>COG5026 Hexokinase [Carbohydrate transport and metabolism]

Probab=95.45  E-value=0.07  Score=42.51  Aligned_cols=61  Identities=10%  Similarity=0.017  Sum_probs=39.9

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .+.+|+||+|+|++|++++.. .|  ...- .+.++.  .|..=.....++++|.-+.+.++..+++
T Consensus        74 ~g~~LaiD~GGTnlRvc~V~l-~g~gt~~~-~~sks~--lp~e~~~~~~~~~l~~~iadrl~~fi~~  136 (466)
T COG5026          74 SGSVLAIDLGGTNLRVCLVVL-GGDGTFDI-EQSKSF--LPVECRDSESRDELFGFIADRLAAFIKE  136 (466)
T ss_pred             CCCEEEEecCCceEEEEEEEe-CCCCCccc-ccCccc--CchhhccCCChHHHHHHHHHHHHHHHHH
Confidence            456899999999999999997 54  2221 111111  1111111237899999999999887765

>TIGR01175 pilM type IV pilus assembly protein PilM

Probab=95.39  E-value=0.21  Score=38.17  Aligned_cols=74  Identities=7%  Similarity=0.049  Sum_probs=40.4

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      ..++|||||++++|++.+....+  +++.....+.+...-..|.. .|++.    +.+++++++++   .++.... ..+
T Consensus         3 ~~~vgiDIg~~~Ik~v~~~~~~~~~~v~~~~~~~~p~~~i~~g~i-~d~~~----~~~~l~~~~~~---~~~~~k~-v~~   73 (348)
T TIGR01175         3 SLLVGIDIGSTSVKVAQLKRSGDRYKLEHYAVEPLPAGIFTEGHI-VEYQA----VAEALKELLSE---LGINTKK-AAT   73 (348)
T ss_pred             CcEEEEEeccCeEEEEEEEecCCceEEEEEEEEECCCCcccCCCc-cCHHH----HHHHHHHHHHH---cCCCcce-EEE
Confidence            46899999999999999985123  33333444443221122322 34544    45555666655   3443222 345


Q ss_pred             EEecC
Q psy1582          91 GITNQ   95 (129)
Q Consensus        91 gis~~   95 (129)
                      ++.+.
T Consensus        74 alp~~   78 (348)
T TIGR01175        74 AVPGS   78 (348)
T ss_pred             EecCC
Confidence            55543

This protein is required for the assembly of the type IV fimbria in Pseudomonas aeruginosa responsible for twitching motility, and for a similar pilus-like structure in Synechocystis. It is also found in species such as Deinococcus described as having natural transformation (for which a type IV pilus-like structure is proposed) but not fimbria.

>KOG1369|consensus

Probab=95.38  E-value=0.13  Score=41.53  Aligned_cols=95  Identities=16%  Similarity=0.086  Sum_probs=55.7

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcE--EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCC-CCCCeeE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEE--VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGL-SRDDIVT   89 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~i--v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~-~~~~I~~   89 (129)
                      +.++++|+|+|+.|+.++.. .|.-  +...+..+..  | +..+....+++|+.|..++...+++.   +. .+++ .-
T Consensus        86 G~~lalDLGGTn~Rv~~v~L-~g~~~~~~~~~~~~~i--p-~~~m~gt~~~Lfd~Ia~~l~~F~~~~---~~~~~~~-l~  157 (474)
T KOG1369|consen   86 GKFLALDLGGTNFRVLLVKL-GGGRTSVRMYNKIYAI--P-EEIMQGTGEELFDFIARCLADFLDKM---GLKGASK-LP  157 (474)
T ss_pred             CCEEEEecCCCceEEEEEEe-cCCcccceeeeeeEec--C-HHHHcCchHHHHHHHHHHHHHHHHHh---ccccccc-cc
Confidence            45799999999999999998 6652  2222222211  1 11122356889999999998887752   21 2222 44


Q ss_pred             EEEecCcceEEEEeCCCCcccccceeecCCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLYNAIEQGLRI  120 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r  120 (129)
                      +|++..-    |++.. +.--.-.+.|....
T Consensus       158 lgFTFSf----P~~Q~-si~~g~L~~wTkGf  183 (474)
T KOG1369|consen  158 LGFTFSF----PCRQT-SIDKGTLIRWTKGF  183 (474)
T ss_pred             cceEEee----eeeec-ccccceEEEecccc
Confidence            5665432    56553 33223345787644

>PLN02666 5-oxoprolinase

Probab=95.35  E-value=0.079  Score=47.54  Aligned_cols=78  Identities=8%  Similarity=0.049  Sum_probs=44.9

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHH-H-HhCCCCCCCee
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEK-L-SAHGLSRDDIV   88 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~-~-~~~~~~~~~I~   88 (129)
                      ..|.+|||+|+|.+-++++|. ++.-+...+.+..  .|      .+| +.+.+.+..+++.++.. + ++.++++++|.
T Consensus         8 ~~~rigIDvGGTFTD~v~~~~-~~~~~~~~K~~st--tp------~d~~~gv~~Gi~~~l~~~~~~~~~~~~~~~~~~i~   78 (1275)
T PLN02666          8 RKFRFCIDRGGTFTDVYAEVP-GGSDFRVLKLLSV--DP------ANYDDAPREGIRRILEEVTGKKIPRSAKIPTERIE   78 (1275)
T ss_pred             CCEEEEEECCcCCEeEEEEec-CCCeEEEEEeCCC--CC------CChhHHHHHHHHHHHHHHhcCCcccccCCChHHcc
Confidence            568999999999999999997 5553444454431  01      233 23445555544443210 0 01355556777


Q ss_pred             EEEEecCcce
Q psy1582          89 TLGITNQRET   98 (129)
Q Consensus        89 ~Igis~~~~g   98 (129)
                      .|..++...+
T Consensus        79 ~v~hGTT~at   88 (1275)
T PLN02666         79 WIRMGTTVAT   88 (1275)
T ss_pred             EEEEechHHH
Confidence            7777765433

>PRK13320 pantothenate kinase; Reviewed

Probab=95.26  E-value=0.19  Score=37.06  Aligned_cols=26  Identities=8%  Similarity=0.119  Sum_probs=21.0

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSH   41 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~   41 (129)
                      .+|.||+|.|++|.++++.  ++++...
T Consensus         3 M~L~iDiGNT~ik~~~~~~--~~~~~~~   28 (244)
T PRK13320          3 MNLVIDIGNTTTKLAVFEG--DELLEVF   28 (244)
T ss_pred             eEEEEEeCCCcEEEEEEEC--CEEEEEE
Confidence            3799999999999999995  4666543

>COG4820 EutJ Ethanolamine utilization protein, possible chaperonin [Amino acid transport and metabolism]

Probab=95.05  E-value=0.16  Score=37.00  Aligned_cols=30  Identities=3%  Similarity=0.038  Sum_probs=26.5

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSH   41 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~   41 (129)
                      ..++++|||+||.++-..++|. +|+.++-.
T Consensus        27 ~sk~~vGVDLGT~~iV~~vlD~-d~~Pvag~   56 (277)
T COG4820          27 ESKLWVGVDLGTCDIVSMVLDR-DGQPVAGC   56 (277)
T ss_pred             cCceEEEeecccceEEEEEEcC-CCCeEEEE
Confidence            3589999999999999999999 89888754

>PRK13331 pantothenate kinase; Reviewed

Probab=95.04  E-value=0.14  Score=38.17  Aligned_cols=61  Identities=10%  Similarity=-0.078  Sum_probs=38.3

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      .-+|.||+|.|+++.++|+.  .+++...+  +..        ....+         ++.++..   .++.+++|..+.+
T Consensus         7 ~~~L~iDiGNT~~~~g~f~~--~~~~~~~r--t~~--------~~t~d---------~~~~l~~---~~~~~~~i~~~ii   62 (251)
T PRK13331          7 NEWLALMIGNSRLHWGYFSG--ETLVKTWD--TPH--------LDESI---------IQLLLPG---QTLLIVAPNPLVI   62 (251)
T ss_pred             CcEEEEEeCCCcEEEEEEEC--CEEEEEEE--cCC--------cchHH---------HHHHHHH---cCCCccccCEEEE
Confidence            35799999999999999995  35554211  210        11111         3344444   4666667888888


Q ss_pred             ecCcc
Q psy1582          93 TNQRE   97 (129)
Q Consensus        93 s~~~~   97 (129)
                      |+..|
T Consensus        63 sSVVP   67 (251)
T PRK13331         63 ASVVP   67 (251)
T ss_pred             EecCc
Confidence            87654

>TIGR02529 EutJ ethanolamine utilization protein EutJ family protein

Probab=95.01  E-value=0.21  Score=36.63  Aligned_cols=50  Identities=8%  Similarity=0.074  Sum_probs=30.6

Q ss_pred             EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHH
Q psy1582          17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTM   70 (129)
Q Consensus        17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~   70 (129)
                      |+||||+++|+++.+. .+..++....|-.  .-..|.. .|.+.....+....
T Consensus         1 g~dig~~~ik~v~~~~-~~~~~~~~~~~~~--~~~~g~I-~d~~~~~~~l~~l~   50 (239)
T TIGR02529         1 GVDLGTANIVIVVLDE-DGQPVAGVMQFAD--VVRDGIV-VDFLGAVEIVRRLK   50 (239)
T ss_pred             CCCcccceEEEEEEec-CCCEEEEEecccc--cccCCeE-EEhHHHHHHHHHHH
Confidence            7999999999999998 6655554433221  1234433 46665554444444

>PRK13326 pantothenate kinase; Reviewed

Probab=94.77  E-value=0.18  Score=37.74  Aligned_cols=28  Identities=0%  Similarity=-0.073  Sum_probs=21.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      ..|.||+|.|++|.++|+.  ++++...+.
T Consensus         7 ~~L~IDiGNT~ik~glf~~--~~l~~~~r~   34 (262)
T PRK13326          7 SQLIIDIGNTSISFALYKD--NKMQIFCKL   34 (262)
T ss_pred             EEEEEEeCCCeEEEEEEEC--CEEEEEEEe
Confidence            4789999999999999995  466653333

>PRK09605 bifunctional UGMP family protein/serine/threonine protein kinase; Validated

Probab=94.76  E-value=0.22  Score=40.59  Aligned_cols=79  Identities=16%  Similarity=0.226  Sum_probs=54.1

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEEC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQD-PMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      ++||||-.+..+.++|++. +|+++......+  ..+..|.+... ...-.+.+...+++++++   +++++.+|.+|++
T Consensus         2 ~il~iets~~~~s~a~~~~-~~~~~~~~~~~~--~~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav   75 (535)
T PRK09605          2 IVLGIEGTAWKTSAGIVDS-DGDVLFNESDPY--KPPSGGIHPREAAEHHAEAIPKVIKEALEE---AGLKPEDIDLVAF   75 (535)
T ss_pred             EEEEEEccccceEEEEEeC-CCcEEEEEEeec--cCCcCCCChHHHHHHHHHHHHHHHHHHHHH---cCCCHhhCCEEEE
Confidence            6899999999999999997 678887665442  22233422111 122344566667777776   7888899999999


Q ss_pred             ecCcceE
Q psy1582          93 TNQRETT   99 (129)
Q Consensus        93 s~~~~g~   99 (129)
                      +. +||.
T Consensus        76 ~~-gPg~   81 (535)
T PRK09605         76 SQ-GPGL   81 (535)
T ss_pred             CC-CCCc
Confidence            85 4553

>TIGR03725 bact_YeaZ universal bacterial protein YeaZ

Probab=94.60  E-value=0.28  Score=35.00  Aligned_cols=65  Identities=11%  Similarity=0.140  Sum_probs=45.9

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|+||-.+..+.+++++  +++++.+.....             +..--+.+...+++++++   +++..++|..|.++.
T Consensus         1 iLaidTs~~~~sval~~--~~~~~~~~~~~~-------------~~~h~~~l~~~i~~~l~~---~~~~~~~i~~iav~~   62 (202)
T TIGR03725         1 ILAIDTSTEALSVALLD--DGEILAERSEEA-------------GRNHSEILLPMIEELLAE---AGLSLQDLDAIAVGV   62 (202)
T ss_pred             CEEEECCCcceEEEEEE--CCEEEEEEeehh-------------hHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence            48999999999999998  467776543322             222344566667777776   788888998888875


Q ss_pred             Ccce
Q psy1582          95 QRET   98 (129)
Q Consensus        95 ~~~g   98 (129)
                       |||
T Consensus        63 -GPG   65 (202)
T TIGR03725        63 -GPG   65 (202)
T ss_pred             -CCC
Confidence             454

This family describes a protein family, YeaZ, that appears to be universal in bacteria, but whose function is unknown. This family is related to the gcp (glycoprotease) protein family, also universal in bacteria and unknown in function. In Gram-positive lineages, members of these two related families often belong to the same operon, along with the ribosomal-protein-alanine acetyltransferase gene. Members of this family may occur as fusions with gcp or the ribosomal protein N-acetyltransferase rimI, and is frequently encoded next to rimI.

>PF11104 PilM_2: Type IV pilus assembly protein PilM;; PDB: 2YCH_A

Probab=94.59  E-value=0.24  Score=38.01  Aligned_cols=69  Identities=12%  Similarity=0.181  Sum_probs=34.1

Q ss_pred             EEeCCCCceeEEEEeCCCCc---EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          17 RLSATYHTSRVLIISALTQE---EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        17 giDiGtt~ik~~l~d~~~g~---iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |||||+.++|++-+.. .++   +......++|...-.+| .-.|++.+    .+.+++++++   .++.. +-..+++.
T Consensus         1 GiDiG~~siK~v~l~~-~~~~~~l~~~~~~~~p~~~i~~g-~i~d~~~l----~~~L~~~~~~---~~~~~-k~v~~aip   70 (340)
T PF11104_consen    1 GIDIGSSSIKAVELSK-KGNRFQLEAFASIPLPPGAISDG-EIVDPEAL----AEALKELLKE---NKIKG-KKVVLAIP   70 (340)
T ss_dssp             EEEE-SSEEEEEEEET-TTT--EEEEEEEEE--TTSEETT-EES-HHHH----HHHHHHHHHH---HT-----EEEEEE-
T ss_pred             CeecCCCeEEEEEEEE-cCCccEEEEEEEEECCCCCccCC-CcCCHHHH----HHHHHHHHHH---cCCCC-CeEEEEeC
Confidence            8999999999999997 543   33445555542211122 22355554    4455555554   23322 23346666


Q ss_pred             cC
Q psy1582          94 NQ   95 (129)
Q Consensus        94 ~~   95 (129)
                      +.
T Consensus        71 ~~   72 (340)
T PF11104_consen   71 GS   72 (340)
T ss_dssp             GG
T ss_pred             CC
Confidence            54

>COG1214 Inactive homolog of metal-dependent proteases, putative molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=94.43  E-value=0.15  Score=37.06  Aligned_cols=68  Identities=12%  Similarity=0.182  Sum_probs=49.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .+|+||-.+..+-+++++.++++++.+......          .+   .-+.+.-.+++++++   ++++..++.+|.++
T Consensus         2 ~iLaiDTs~~~~s~ai~~~~~~~vl~~~~~~~~----------r~---hse~l~~~i~~ll~~---~~~~~~dld~iav~   65 (220)
T COG1214           2 KILAIDTSTSALSVALYLADDGKVLAEHTEKLK----------RN---HAERLMPMIDELLKE---AGLSLQDLDAIAVA   65 (220)
T ss_pred             cEEEEEcChhhhhhheeecCCCcEEEEEEEecc----------cc---HHHHHHHHHHHHHHH---cCCCHHHCCEEEEc
Confidence            579999999999999888656778777665442          12   234666677788777   67888889988888


Q ss_pred             cCcce
Q psy1582          94 NQRET   98 (129)
Q Consensus        94 ~~~~g   98 (129)
                      . |||
T Consensus        66 ~-GPG   69 (220)
T COG1214          66 K-GPG   69 (220)
T ss_pred             c-CCC
Confidence            5 455

>TIGR00329 gcp_kae1 metallohydrolase, glycoprotease/Kae1 family

Probab=94.38  E-value=0.26  Score=37.44  Aligned_cols=79  Identities=10%  Similarity=0.175  Sum_probs=52.5

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccc-cCCCCeE-EECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTI-SPQEGWA-EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~-~~~~g~~-~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ||||-.+..+.++|+|. +++++.......... ....|.+ +.....-.+.+...+++++++   +++++++|.+|+++
T Consensus         1 LaidTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~iav~   76 (305)
T TIGR00329         1 LGIETSCDDTGVAIVDE-EGNVLANIKISQIPLHAKYGGVVPEEASRHHAENIPPLLERALIE---SNVDKSEIDLIAYT   76 (305)
T ss_pred             CEEecCccceEEEEEEC-CCcEEEEEEecccccccccCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEe
Confidence            58999999999999996 578887665443211 1122322 122333445566667777776   78899999999998


Q ss_pred             cCcceE
Q psy1582          94 NQRETT   99 (129)
Q Consensus        94 ~~~~g~   99 (129)
                      . +||.
T Consensus        77 ~-GPG~   81 (305)
T TIGR00329        77 Q-GPGL   81 (305)
T ss_pred             c-CCCc
Confidence            6 5553

This subfamily includes the well-studied secreted O-sialoglycoprotein endopeptidase (glycoprotease, EC 3.4.24.57) of Pasteurella haemolytica, a pathogen. A member from Riemerella anatipestifer, associated with cohemolysin activity, likewise is exported without benefit of a classical signal peptide and shows glycoprotease activity on the test substrate glycophorin. However, archaeal members of this subfamily show unrelated activities as demonstrated in Pyrococcus abyssi: DNA binding, iron binding, apurinic endonuclease activity, genomic association with a kinase domain, and no glycoprotease activity. This family thus pulls together a set of proteins as a homology group that appears to be near-universal in life, yet heterogeneous in assayed function between bacteria and archaea.

>TIGR03723 bact_gcp putative glycoprotease GCP

Probab=94.33  E-value=0.4  Score=36.66  Aligned_cols=80  Identities=14%  Similarity=0.167  Sum_probs=52.3

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeee-ccccCCCCeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI-STISPQEGWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~-~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||-.+..+.++|++. +++++....... ....+..|.+.. ....--+.+...+++++++   +++..++|.+|++
T Consensus         1 iLaIdTs~~~~sval~~~-~~~il~~~~~~~~~~~~~~gGi~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~~id~iav   76 (314)
T TIGR03723         1 ILGIETSCDETAVAIVDD-GKGLLSNIVASQIELHARYGGVVPELASRAHLEAIPPLIEEALAE---AGLTLSDIDAIAV   76 (314)
T ss_pred             CEEEECcccceEEEEEEC-CceEEEEEEeehhhhccCcCCcCcchhHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence            589999999999999996 555776554422 111222332221 2333445666677777776   7888899999999


Q ss_pred             ecCcceE
Q psy1582          93 TNQRETT   99 (129)
Q Consensus        93 s~~~~g~   99 (129)
                      +. +||.
T Consensus        77 ~~-GPGs   82 (314)
T TIGR03723        77 TA-GPGL   82 (314)
T ss_pred             ec-CCCh
Confidence            86 5663

This model represents bacterial members of a protein family that is widely distributed. In a few pathogenic species, the protein is exported in a way that may represent an exceptional secondary function. This model plus companion (archaeal) model TIGR03722 together span the prokaryotic member sequences of TIGR00329, a protein family that appears universal in life, and whose broad function is unknown. A member of TIGR03722 has been characterized as a DNA-binding protein with apurinic endopeptidase activity. In contrast, the rare characterized members of the present family show O-sialoglycoprotein endopeptidase (EC. 3.4.24.57) activity after export. These include glycoprotease (gcp) from Pasteurella haemolytica A1 and a cohemolysin from Riemerella anatipestifer (GB|AAG39646.1). The member from Staphylococcus aureus is essential and is related to cell wall dynamics and the modulation of autolysis, but members are also found in the Mycoplasmas

>TIGR01319 glmL_fam conserved hypothetical protein

Probab=94.32  E-value=0.21  Score=40.20  Aligned_cols=29  Identities=3%  Similarity=-0.134  Sum_probs=22.9

Q ss_pred             EeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582          18 LSATYHTSRVLIISALTQEEVVSHSMDIS   46 (129)
Q Consensus        18 iDiGtt~ik~~l~d~~~g~iv~~~~~~~~   46 (129)
                      +|+|+|.+|+.+||.++++++...+..++
T Consensus         1 ~DiGST~Tk~~a~~~~~~~~~~~~~~~tp   29 (463)
T TIGR01319         1 LDFGSTWTKAAAFDIEGDAILATAHDITP   29 (463)
T ss_pred             CCccccceEEEEEecCCCcEEEEEeccCc
Confidence            59999999999999745777777665553

This small family includes, so far, an uncharacterized protein from E. coli O157:H7 and GlmL from Clostridium tetanomorphum and Clostridium cochlearium. GlmL is located between the genes for the two subunits, epsilon (GlmE) and sigma (GlmS), of the coenzyme-B12-dependent glutamate mutase (methylaspartate mutase), the first enzyme in a pathway of glutamate fermentation. Members shows significant sequence similarity to the hydantoinase branch of the hydantoinase/oxoprolinase family (pfam01968).

>PRK10854 exopolyphosphatase; Provisional

Probab=94.32  E-value=0.47  Score=38.69  Aligned_cols=80  Identities=10%  Similarity=0.118  Sum_probs=47.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      +..+.+||||+.++|..|++..+|  +++.+.+.....-.  ...|  .-+++ -+++..+++++..+.++  ....+++
T Consensus        10 ~~~~A~IDIGSNSirL~I~e~~~~~~~~i~~~k~~vrLg~g~~~~g--~Ls~e-~~~r~~~~L~~F~~~~~--~~~v~~v   84 (513)
T PRK10854         10 PQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLDSDN--MLSEE-AMERGLNCLSLFAERLQ--GFSPANV   84 (513)
T ss_pred             CCEEEEEEeccchheEEEEEecCCcEEEeeeeeEEEECCCCcCCCC--CcCHH-HHHHHHHHHHHHHHHHH--hCCCCeE
Confidence            347899999999999999997333  34444444443211  1122  12333 35566667766655442  3344678


Q ss_pred             eEEEEecCc
Q psy1582          88 VTLGITNQR   96 (129)
Q Consensus        88 ~~Igis~~~   96 (129)
                      .+++.+..+
T Consensus        85 ~~vATsAlR   93 (513)
T PRK10854         85 CIVGTHTLR   93 (513)
T ss_pred             EEEehHHHH
Confidence            888877654

>TIGR00671 baf pantothenate kinase, type III

Probab=94.10  E-value=0.22  Score=36.79  Aligned_cols=27  Identities=4%  Similarity=-0.144  Sum_probs=21.0

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      |.||+|.|++|+++|+.  ++++...+.+
T Consensus         2 L~iDiGNT~i~~g~~~~--~~~~~~~r~~   28 (243)
T TIGR00671         2 LLIDVGNTRIVFALNSG--NKVYQFWRLA   28 (243)
T ss_pred             EEEEECCCcEEEEEEEC--CEEEEEEEec
Confidence            78999999999999995  4666544443

This model describes a family of proteins found in a single copy in at least ten different early completed bacterial genomes. The only characterized member of the family is Bvg accessory factor (Baf), a protein required, in addition to the regulatory operon bvgAS, for heterologous transcription of the Bordetella pertussis toxin operon (ptx) in E. coli.

>COG0145 HyuA N-methylhydantoinase A/acetone carboxylase, beta subunit [Amino acid transport and metabolism / Secondary metabolites biosynthesis, transport, and catabolism]

Probab=94.04  E-value=0.29  Score=41.32  Aligned_cols=32  Identities=3%  Similarity=0.016  Sum_probs=26.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      ++.+|||+|+|.+=++++|. ++.++...+.++
T Consensus         2 ~~~iGID~GGTfTDaV~~~~-~~g~~~~~K~lT   33 (674)
T COG0145           2 MLRIGIDVGGTFTDAVLLDE-DGGVLATIKVLT   33 (674)
T ss_pred             ceEEEEEcCCCcEeEEEEeC-CCCEEEEEEccC
Confidence            57899999999999999998 555777666654

>COG4972 PilM Tfp pilus assembly protein, ATPase PilM [Cell motility and secretion / Intracellular trafficking and secretion]

Probab=93.61  E-value=0.22  Score=38.46  Aligned_cols=64  Identities=17%  Similarity=0.188  Sum_probs=37.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCe---EEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGW---AEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD   86 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~---~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (129)
                      ..+|||||++++|++-... .|.-..-.++.... .|.+-.   .-.+++    ++.+.+++++.+   +++..++
T Consensus        11 ~~vGIdI~~~sVKvvqLs~-~g~~~kLe~y~~~~-lp~~iv~dg~ivd~~----av~~~Lk~ala~---~gi~~k~   77 (354)
T COG4972          11 AAVGIDIGSHSVKVVQLSR-SGNRYKLEKYASEP-LPENIVADGKIVDYD----AVASALKRALAK---LGIKSKN   77 (354)
T ss_pred             ceeeEeeccceEEEEEEcc-cCCceeeeeeeecc-cCccccccCCcccHH----HHHHHHHHHHHh---cCcchhh
Confidence            5899999999999999996 66655444433221 122111   123554    455556666665   4554333

>COG3734 DgoK 2-keto-3-deoxy-galactonokinase [Carbohydrate transport and metabolism]

Probab=93.50  E-value=0.16  Score=38.44  Aligned_cols=33  Identities=3%  Similarity=-0.041  Sum_probs=28.0

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      |...+++.||=|||++|+-+++. +|+++.+.+-
T Consensus         2 m~~~~~i~iDWGTT~~R~wL~~~-dg~~l~~r~~   34 (306)
T COG3734           2 MSEPAYIAIDWGTTNLRAWLVRG-DGAVLAERRS   34 (306)
T ss_pred             CCCceEEEEecCCccEEEEEEcC-Ccceeeeecc
Confidence            34578999999999999999999 8988876543

>TIGR03706 exo_poly_only exopolyphosphatase

Probab=93.14  E-value=0.49  Score=35.83  Aligned_cols=77  Identities=12%  Similarity=0.188  Sum_probs=44.1

Q ss_pred             EEEEeCCCCceeEEEEeCCCC--cEEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +.+||+|+.++|..+++..++  +++.+.+.+..+-.  ...|  ..+++. ++.+.+++++..+.++  .....++..+
T Consensus         2 ~AvIDiGSNsirl~I~~~~~~~~~~l~~~~~~vrL~~~~~~~g--~i~~e~-i~~~~~~l~~f~~~~~--~~~v~~i~~v   76 (300)
T TIGR03706         2 IAAIDIGSNSVRLVIARGVEGSLQVLFNEKEMVRLGEGLDSTG--RLSEEA-IERALEALKRFAELLR--GFPVDEVRAV   76 (300)
T ss_pred             eEEEEecCCeeeEEEEEecCCcEEEhhheeeeeecCCCCCCCC--CcCHHH-HHHHHHHHHHHHHHHH--hCCCCeEEEE
Confidence            478999999999999996223  34444444433211  1122  223443 4555666666655442  2334578888


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      +.+..+
T Consensus        77 aTsa~R   82 (300)
T TIGR03706        77 ATAALR   82 (300)
T ss_pred             EcHHHH
Confidence            777654

It appears that a single enzyme may act as both exopolyphosphatase (Ppx) and guanosine pentaphosphate phosphohydrolase (GppA) in a number of species. Members of the seed alignment use to define this exception-level model are encoded adjacent to a polyphosphate kinase 1 gene, and the trusted cutoff is set high enough (425) that no genome has a second hit. Therefore all members may be presumed to at least share exopolyphospatase activity, and may lack GppA activity. GppA acts in the stringent response.

>TIGR03722 arch_KAE1 universal archaeal protein Kae1

Probab=93.09  E-value=0.59  Score=35.78  Aligned_cols=76  Identities=18%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      ||||-.+..+.++|++. +++++...+....  .+..|.+. .....-.+.+...+++++++   +++++.+|.+|+++.
T Consensus         1 Lgiets~~~~s~al~~~-~~~i~~~~~~~~~--~~~gg~~p~~~~~~H~~~l~~~i~~~l~~---~~~~~~did~Iavt~   74 (322)
T TIGR03722         1 LGIEGTAHTFGVGIVDE-DGEILANVSDTYV--PEKGGIHPREAAEHHAEVAPKLIKEALEE---AGVSLEDIDAVAFSQ   74 (322)
T ss_pred             CEEeccccceEEEEEEC-CCeEEEEEEeecc--cCcCCcChhHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence            58888888899999997 6777775554432  22334332 12223344566667777776   788899999999986


Q ss_pred             Ccce
Q psy1582          95 QRET   98 (129)
Q Consensus        95 ~~~g   98 (129)
                       +||
T Consensus        75 -gPg   77 (322)
T TIGR03722        75 -GPG   77 (322)
T ss_pred             -CCc
Confidence             344

This family represents the archaeal protein Kae1. Its partner Bud32 is fused with it in about half of the known archaeal genomes. The pair, which appears universal in the archaea, corresponds to EKC/KEOPS complex in eukaryotes. A recent characterization of the member from Pyrococcus abyssi, as an iron-binding, atypical DNA-binding protein with an apurinic lyase activity, challenges the common annotation of close homologs as O-sialoglycoprotein endopeptidase. The latter annotation is based on a characterized protein from the bacterium Pasteurella haemolytica.

>COG0837 Glk Glucokinase [Carbohydrate transport and metabolism]

Probab=93.01  E-value=0.32  Score=37.14  Aligned_cols=28  Identities=7%  Similarity=-0.028  Sum_probs=19.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      ...++| |||+|+.|.+|+....++....
T Consensus         6 ~p~Lvg-DIGGTnaRfaLv~~a~~~~~~~   33 (320)
T COG0837           6 YPRLVG-DIGGTNARFALVEIAPAEPLQA   33 (320)
T ss_pred             CceEEE-ecCCcceEEEEeccCCCCcccc
Confidence            344555 9999999999987635554443

>PF14450 FtsA: Cell division protein FtsA; PDB: 1E4F_T 4A2B_A 4A2A_A 1E4G_T

Probab=92.84  E-value=0.89  Score=29.63  Aligned_cols=29  Identities=7%  Similarity=0.036  Sum_probs=20.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      +++||+|+++++++++..  +........++
T Consensus         1 i~~iDiGs~~~~~~i~~~--~~~~~~~vl~~   29 (120)
T PF14450_consen    1 IVVIDIGSSKTKVAIAED--GSDGYIRVLGV   29 (120)
T ss_dssp             EEEEEE-SSSEEEEEEET--TEEEEEEEES-
T ss_pred             CEEEEcCCCcEEEEEEEe--CCCCcEEEEEE
Confidence            578999999999999996  45554444444

>COG3894 Uncharacterized metal-binding protein [General function prediction only]

Probab=92.61  E-value=0.22  Score=40.59  Aligned_cols=32  Identities=9%  Similarity=-0.015  Sum_probs=27.9

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHS   42 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~   42 (129)
                      .+.|=+++|+|||.+++.++|+.+|+++....
T Consensus       162 ~~~YGvAvDlGTS~i~aqlVDL~sgevv~t~~  193 (614)
T COG3894         162 NEAYGVAVDLGTSGIRAQLVDLKSGEVVATVI  193 (614)
T ss_pred             ceeeeeEEecccceeeeEEEeccCCcEEEeee
Confidence            35688999999999999999998999987653

>PRK14878 UGMP family protein; Provisional

Probab=92.21  E-value=0.86  Score=34.97  Aligned_cols=76  Identities=17%  Similarity=0.228  Sum_probs=50.6

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEE-CHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQ-DPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~-~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      ||||-.+..+.++|++.  ++++......+  ..+..|.+.. ....-.+.+...+++++++   +++++.+|.+|+++.
T Consensus         1 l~iets~~~~s~al~~~--~~i~~~~~~~~--~~~~gg~~p~~~~~~h~~~l~~~i~~~l~~---a~~~~~did~Iavt~   73 (323)
T PRK14878          1 LGIESTAHTLGVGIVKE--DKVLANVRDTY--VPEKGGIHPREAAQHHAEVAPELLRKALEK---AGISIEDIDAVAVSQ   73 (323)
T ss_pred             CEEecCCcccEEEEEEC--CEEEEEEEEec--ccCcCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEEec
Confidence            58898888899999984  55776655533  2233444322 1223344566777788776   789999999999986


Q ss_pred             CcceE
Q psy1582          95 QRETT   99 (129)
Q Consensus        95 ~~~g~   99 (129)
                       +||.
T Consensus        74 -gPG~   77 (323)
T PRK14878         74 -GPGL   77 (323)
T ss_pred             -CCCc
Confidence             4543

>PF03309 Pan_kinase: Type III pantothenate kinase; InterPro: IPR004619 Pantothenate kinase (PanK or CoaA) catalyses the first step of the universal five step coenzyme A (CoA) biosynthesis pathway

Probab=92.02  E-value=0.85  Score=32.59  Aligned_cols=23  Identities=0%  Similarity=-0.122  Sum_probs=18.0

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVV   39 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~   39 (129)
                      +|.||+|.|++|.++++. + +++.
T Consensus         1 ~L~iDiGNT~ik~~~~~~-~-~~~~   23 (206)
T PF03309_consen    1 ILLIDIGNTRIKWALFDG-D-KLID   23 (206)
T ss_dssp             EEEEEE-SSEEEEEEEET-T-EEEE
T ss_pred             CEEEEECCCeEEEEEEEC-C-EEEe
Confidence            578999999999999996 4 4444

CoA is a ubiquitous and essential cofactor in all living organsims. Pantothenate kinase catalyses the first and rate limiting step in the CoA biosynthetic pathway, which involves transferring a phosphoryl group from ATP to pantothenate, also known as vitamin B5. Three distinct types of pantothenate kinase enzymes have been identified: type I PanK enzymes are typified by the E. coli CoaA protein, type II enzymes are primarily found in eukaryotic organisms whilst type III enzymes have a wider phylogenic distribution and are not feedback inhibited by CoA []. This entry represents the type III pantothenate kinase family, such as that found in Helicobacter pylori. PanK III enzymes have a much wider phylogenic distribution than PanK I, and differs significantly in biochemical activity. PanK III enzymes are are not feedback inhibited by CoA concentration (which is also the case for PanK II enzymes), and PanK III enzymes have an unusually high Km for ATP []. ; GO: 0045893 positive regulation of transcription, DNA-dependent; PDB: 2GTD_E 3BF1_F 3BEX_D 3BF3_F 2NRH_B 2H3G_X 3DJC_J 2F9T_A 2F9W_A.

>COG0248 GppA Exopolyphosphatase [Nucleotide transport and metabolism / Inorganic ion transport and metabolism]

Probab=91.96  E-value=0.33  Score=39.55  Aligned_cols=78  Identities=12%  Similarity=0.182  Sum_probs=46.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCC-C--cEEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          13 QIRDRLSATYHTSRVLIISALT-Q--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~-g--~iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      +.+.+||+||.++|.+|++. . |  .++.+.+.....-  ....|  .-++ +-.++..++++.+.+.+  .+....+|
T Consensus         3 ~~~A~IDiGSNS~rlvV~~~-~~~~~~~l~~~k~~vrLgegl~~~g--~L~~-eai~R~~~aL~~f~e~~--~~~~~~~v   76 (492)
T COG0248           3 RRVAAIDLGSNSFRLVVAEI-TPGSFQVLFREKRIVRLGEGLDATG--NLSE-EAIERALSALKRFAELL--DGFGAEEV   76 (492)
T ss_pred             ceEEEEEecCCeEEEEEEec-cCCccchhhhhhhheehhcCccccC--CcCH-HHHHHHHHHHHHHHHHH--hhCCCCEE
Confidence            46789999999999999996 3 3  3333333222111  11122  1233 34566667777776654  34556778


Q ss_pred             eEEEEecCc
Q psy1582          88 VTLGITNQR   96 (129)
Q Consensus        88 ~~Igis~~~   96 (129)
                      ..++.+..+
T Consensus        77 ~~vATsA~R   85 (492)
T COG0248          77 RVVATSALR   85 (492)
T ss_pred             EEehhHHHH
Confidence            888877654

>COG1521 Pantothenate kinase type III (Bvg accessory factor family protein) [Transcription]

Probab=91.90  E-value=0.72  Score=34.34  Aligned_cols=29  Identities=3%  Similarity=-0.112  Sum_probs=23.2

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      .|.||+|.|+++.++++  +++.....+.++
T Consensus         2 ~L~iDiGNT~~~~a~~~--~~~~~~~~r~~t   30 (251)
T COG1521           2 LLLIDIGNTRIVFALYE--GGKVVQTWRLAT   30 (251)
T ss_pred             eEEEEeCCCeEEEEEec--CCeEEEEEeecc
Confidence            58899999999999999  467766655544

>COG1548 Predicted transcriptional regulator/sugar kinase [Transcription / Carbohydrate transport and metabolism]

Probab=91.76  E-value=0.58  Score=35.24  Aligned_cols=20  Identities=0%  Similarity=-0.162  Sum_probs=16.7

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..++|||||+-++|.+.-|-
T Consensus         3 ~kilGiDIGGAntk~a~~DG   22 (330)
T COG1548           3 MKILGIDIGGANTKIASSDG   22 (330)
T ss_pred             ceEEEeeccCccchhhhccC
Confidence            45799999999999998443

>COG0533 QRI7 Metal-dependent proteases with possible chaperone activity [Posttranslational modification, protein turnover, chaperones]

Probab=91.60  E-value=0.93  Score=35.21  Aligned_cols=82  Identities=12%  Similarity=0.133  Sum_probs=54.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeecc-ccCCCCeEE-ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDIST-ISPQEGWAE-QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~-~~~~~g~~~-~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      .+|||.-.-..+-++|++. +. +++......-. +.+..|.+. .....-.+.+..++++++++   ++++.++|.+|+
T Consensus         2 ~iLGIEtScDeT~vaIv~~-~~-ilan~~~sq~~~h~~~GGVvPe~Asr~H~e~i~~li~~al~e---A~~~~~dID~IA   76 (342)
T COG0533           2 IILGIETSCDETGVAIVDE-EK-ILANVVASQIELHARYGGVVPELASRHHVENIPPLIEEALAE---AGVSLEDIDAIA   76 (342)
T ss_pred             eEEEEEcccccceeEEEec-cC-hhheehhhcccccCCCCCcCccHHHHHHHHHHHHHHHHHHHH---cCCCcccCCEEE
Confidence            5789998888999999997 55 66544332221 222334432 22333455666777777776   899889999999


Q ss_pred             EecCcceEEE
Q psy1582          92 ITNQRETTVV  101 (129)
Q Consensus        92 is~~~~g~v~  101 (129)
                      ++. +||++.
T Consensus        77 ~T~-gPGL~g   85 (342)
T COG0533          77 VTA-GPGLGG   85 (342)
T ss_pred             Eec-CCCchh
Confidence            985 688754

>PF00871 Acetate_kinase: Acetokinase family; InterPro: IPR000890 Acetate kinase, which is predominantly found in micro-organisms, facilitates the production of acetyl-CoA by phosphorylating acetate in the presence of ATP and a divalent cation [, ]

Probab=91.59  E-value=0.43  Score=37.69  Aligned_cols=30  Identities=7%  Similarity=0.043  Sum_probs=23.7

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      +|.|..|+||+|++||+..+.+++.+....
T Consensus         2 ILVIN~GSSS~Kfalf~~~~~~~l~~g~~e   31 (388)
T PF00871_consen    2 ILVINPGSSSTKFALFDMDSGEVLASGLVE   31 (388)
T ss_dssp             EEEEEEESSEEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEcCChHhheeeeEECCCCCeeeechhe
Confidence            689999999999999998455666654443

The enzyme is important in the process of glycolysis, enzyme levels being increased in the presence of excess glucose. The growth of a bacterial mutant lacking acetate kinase has been shown to be inhibited by glucose, suggesting that the enzyme is involved in excretion of excess carbohydrate []. A related enzyme, butyrate kinase, facilitates the formation of butyryl-CoA by phosphorylating butyrate in the presence of ATP to form butyryl phosphate [].; GO: 0016301 kinase activity, 0016774 phosphotransferase activity, carboxyl group as acceptor, 0008152 metabolic process, 0016310 phosphorylation, 0005622 intracellular; PDB: 3P4I_B 3R9P_B 2IIR_J 1SAZ_A 1X9J_D 4DQ8_B 1TUU_A 1TUY_B 1G99_A 1X3N_A ....

>PF01548 DEDD_Tnp_IS110: Transposase; InterPro: IPR002525 Transposase proteins are necessary for efficient DNA transposition

Probab=91.45  E-value=0.7  Score=30.71  Aligned_cols=30  Identities=13%  Similarity=0.150  Sum_probs=25.1

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      ++|||+|....-+++++. .|+++....++.
T Consensus         1 ~vGiDv~k~~~~v~v~~~-~~~~~~~~~~~~   30 (144)
T PF01548_consen    1 FVGIDVSKDTHDVCVIDP-NGEKLRRFKFEN   30 (144)
T ss_pred             eEEEEcccCeEEEEEEcC-CCcEEEEEEEec
Confidence            689999999999999999 887776666544

This entry represents the N-terminal region of the pilin gene inverting protein (PIVML) and members of the IS111A/IS1328/IS1533 family of transposases [, ]. More information about these proteins can be found at Protein of the Month: Transposase [].; GO: 0003677 DNA binding, 0004803 transposase activity, 0006313 transposition, DNA-mediated

>PRK11031 guanosine pentaphosphate phosphohydrolase; Provisional

Probab=90.81  E-value=1.9  Score=35.03  Aligned_cols=80  Identities=6%  Similarity=0.111  Sum_probs=48.1

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQE--EVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      ..++..||||+.++|..|++..++.  ++...+.....-  ....|  .-+++ -++...++++...+.++  .....++
T Consensus         5 ~~~~A~IDIGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-~i~r~~~~L~~F~~~~~--~~~v~~i   79 (496)
T PRK11031          5 SSLYAAIDLGSNSFHMLVVREVAGSIQTLARIKRKVRLAAGLDSDN--ALSNE-AMERGWQCLRLFAERLQ--DIPPSQI   79 (496)
T ss_pred             CCEEEEEEccccceeEEEEEecCCceEEeecceeEEEccCCcCcCC--CcCHH-HHHHHHHHHHHHHHHHH--hCCCCeE
Confidence            5678999999999999999963343  333444444331  11222  12333 35566677776655442  3344678


Q ss_pred             eEEEEecCc
Q psy1582          88 VTLGITNQR   96 (129)
Q Consensus        88 ~~Igis~~~   96 (129)
                      .+++.+..+
T Consensus        80 ~~vATsAvR   88 (496)
T PRK11031         80 RVVATATLR   88 (496)
T ss_pred             EEEEeHHHH
Confidence            888877654

>CHL00094 dnaK heat shock protein 70

Probab=90.36  E-value=0.31  Score=40.63  Aligned_cols=20  Identities=10%  Similarity=-0.014  Sum_probs=17.9

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      .+++|||+|||++++++++.
T Consensus         2 ~~viGIDlGTt~s~va~~~~   21 (621)
T CHL00094          2 GKVVGIDLGTTNSVVAVMEG   21 (621)
T ss_pred             CceEEEEeCcccEEEEEEEC
Confidence            36899999999999999974

>COG4020 Uncharacterized protein conserved in archaea [Function unknown]

Probab=89.80  E-value=3.3  Score=31.17  Aligned_cols=27  Identities=7%  Similarity=0.015  Sum_probs=22.2

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVV   39 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~   39 (129)
                      ...++|||=|||.+|++++|. ++....
T Consensus         2 ~m~fVGiDHGTsgi~~ai~d~-e~~~~F   28 (332)
T COG4020           2 TMMFVGIDHGTSGIKFAIYDG-EKDPEF   28 (332)
T ss_pred             ceEEEeecCCCcceEEEEEcC-CCCceE
Confidence            456899999999999999997 665443

>PF14639 YqgF: Holliday-junction resolvase-like of SPT6 ; PDB: 3PSI_A 3PSF_A

Probab=89.70  E-value=1.4  Score=30.16  Aligned_cols=30  Identities=10%  Similarity=-0.058  Sum_probs=19.9

Q ss_pred             CeEEEEeCCCC----ceeEEEEeCCCCcEEEEEEe
Q psy1582          13 QIRDRLSATYH----TSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        13 ~~~lgiDiGtt----~ik~~l~d~~~g~iv~~~~~   43 (129)
                      .-++++..|..    .+.++++|. +|+++...+.
T Consensus         5 ~rVla~~~g~g~~~~~~~~v~ld~-~G~v~d~~~~   38 (150)
T PF14639_consen    5 PRVLALSWGSGDGDDAVFCVVLDE-NGEVLDHLKL   38 (150)
T ss_dssp             --EEEEE-TT--TTS-EEEEEE-T-TS-EEEEEEE
T ss_pred             CEEEEEEcCCCCCCCCEEEEEECC-CCcEEEEEEE
Confidence            45788888854    589999999 9999998777

>PRK13410 molecular chaperone DnaK; Provisional

Probab=89.69  E-value=0.43  Score=40.23  Aligned_cols=20  Identities=10%  Similarity=-0.026  Sum_probs=17.9

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      .+++|||+|||++++++++.
T Consensus         2 ~~viGIDlGTt~s~va~~~~   21 (668)
T PRK13410          2 GRIVGIDLGTTNSVVAVMEG   21 (668)
T ss_pred             CcEEEEEeCCCcEEEEEEEC
Confidence            46899999999999999974

>PRK13411 molecular chaperone DnaK; Provisional

Probab=89.68  E-value=0.43  Score=40.08  Aligned_cols=19  Identities=11%  Similarity=-0.011  Sum_probs=17.4

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus         3 ~viGIDlGTt~s~va~~~~   21 (653)
T PRK13411          3 KVIGIDLGTTNSCVAVLEG   21 (653)
T ss_pred             cEEEEEeCcccEEEEEEEC
Confidence            6899999999999999974

>PF02075 RuvC: Crossover junction endodeoxyribonuclease RuvC; InterPro: IPR002176 The Escherichia coli ruvC gene is involved in DNA repair and in the late step of RecE and RecF pathway recombination []

Probab=89.13  E-value=2.8  Score=28.52  Aligned_cols=53  Identities=11%  Similarity=0.145  Sum_probs=30.7

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEE---EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv---~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      +||||-|.+++=.++++. +++.+   ......++.        ..+..+=+..+.+.+.+++++
T Consensus         1 ILGIDPgl~~tG~avi~~-~~~~~~~i~~G~I~t~~--------~~~~~~Rl~~I~~~l~~li~~   56 (149)
T PF02075_consen    1 ILGIDPGLSNTGYAVIEE-DGGKLRLIDYGTIKTSS--------KDSLPERLKEIYEELEELIEE   56 (149)
T ss_dssp             EEEEE--SSEEEEEEEEE-ETTEEEEEEEEEEE-----------S--HHHHHHHHHHHHHHHHHH
T ss_pred             CEEECCCCCCeeEEEEEe-eCCEEEEEEeCeEECCC--------CCCHHHHHHHHHHHHHHHHHh
Confidence            689999999999999998 66443   333333321        112333344666777777776

RuvC protein (3.1.22.4 from EC) cleaves cruciform junctions, which are formed by the extrusion of inverted repeat sequences from a super-coiled plasmid and which are structurally analogous to Holliday junctions, by introducing nicks into strands with the same polarity. The nicks leave a 5'terminal phosphate and a 3'terminal hydroxyl group which are ligated by E. coli or Bacteriophage T4 DNA ligases. Analysis of the cleavage sites suggests that DNA topology rather than a particular sequence determines the cleavage site. RuvC protein also cleaves Holliday junctions that are formed between gapped circular and linear duplex DNA by the function of RecA protein. The active form of RuvC protein is a dimer. This is mechanistically suited for an endonuclease involved in swapping DNA strands at the crossover junctions. It is inferred that RuvC protein is an endonuclease that resolves Holliday structures in vivo []. RucC is a small protein of about 20 kD. It requires and binds a magnesium ion. The structure of E. coli ruvC is a 3-layer alpha-beta sandwich containing a 5-stranded beta-sheet sandwiched between 5 alpha-helices [].; GO: 0004520 endodeoxyribonuclease activity, 0006281 DNA repair, 0006310 DNA recombination; PDB: 1HJR_A.

>PRK00290 dnaK molecular chaperone DnaK; Provisional

Probab=88.92  E-value=0.4  Score=39.98  Aligned_cols=19  Identities=11%  Similarity=-0.024  Sum_probs=17.5

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus         3 ~viGIDlGTt~s~va~~~~   21 (627)
T PRK00290          3 KIIGIDLGTTNSCVAVMEG   21 (627)
T ss_pred             cEEEEEeCcccEEEEEEEC
Confidence            5899999999999999984

>PF07318 DUF1464: Protein of unknown function (DUF1464); InterPro: IPR009927 This family consists of several hypothetical archaeal proteins of around 350 residues in length

Probab=88.66  E-value=0.6  Score=36.28  Aligned_cols=40  Identities=10%  Similarity=0.142  Sum_probs=31.0

Q ss_pred             EEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHH
Q psy1582          17 RLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQ   64 (129)
Q Consensus        17 giDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~   64 (129)
                      |||=||+++..+.+|. .|+++...++|...       +..+|..+++
T Consensus         1 GIDpGT~s~dv~~~dd-~g~v~~~~~ipt~~-------v~~~p~~iv~   40 (343)
T PF07318_consen    1 GIDPGTKSFDVCGLDD-DGKVIFYFSIPTEE-------VAKNPSIIVE   40 (343)
T ss_pred             CCCCCCCcEEEEEEcc-CCcEEEEeeccHHH-------hhhCHHHHHH
Confidence            7899999999999997 79999888876643       3456654443

The function of this family is unknown.

>PRK00039 ruvC Holliday junction resolvase; Reviewed

Probab=88.65  E-value=5.6  Score=27.61  Aligned_cols=23  Identities=4%  Similarity=-0.087  Sum_probs=20.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCc
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQE   36 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~   36 (129)
                      ..+||||-|.+++=.++++. +++
T Consensus         2 m~iLGIDPgl~~tG~avi~~-~~~   24 (164)
T PRK00039          2 MRILGIDPGLRRTGYGVIEV-EGR   24 (164)
T ss_pred             CEEEEEccccCceeEEEEEe-cCC
Confidence            36899999999999999998 665

>PRK07058 acetate kinase; Provisional

Probab=88.47  E-value=1  Score=35.64  Aligned_cols=32  Identities=6%  Similarity=0.003  Sum_probs=25.0

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCC--cEEEEE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQ--EEVVSH   41 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~   41 (129)
                      |+++++|.|..|+||+|+.|||..+.  +++.+.
T Consensus         1 ~~~~~iLviNaGSSSlKf~l~~~~~~~~~~l~~G   34 (396)
T PRK07058          1 MSKPLLLTFNAGSSTVKIGLFEVDGNEARRIGKG   34 (396)
T ss_pred             CCCCEEEEEECChHhheeEEEecCCCCceEEEEE
Confidence            36789999999999999999996223  455544

>TIGR02350 prok_dnaK chaperone protein DnaK

Probab=88.19  E-value=0.55  Score=38.84  Aligned_cols=19  Identities=11%  Similarity=-0.024  Sum_probs=17.1

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus         1 ~viGIDlGtt~s~va~~~~   19 (595)
T TIGR02350         1 KIIGIDLGTTNSCVAVMEG   19 (595)
T ss_pred             CEEEEEeCcccEEEEEEEC
Confidence            3799999999999999974

Members of this family are the chaperone DnaK, of the DnaK-DnaJ-GrpE chaperone system. All members of the seed alignment were taken from completely sequenced bacterial or archaeal genomes and (except for Mycoplasma sequence) found clustered with other genes of this systems. This model excludes DnaK homologs that are not DnaK itself, such as the heat shock cognate protein HscA (TIGR01991). However, it is not designed to distinguish among DnaK paralogs in eukaryotes. Note that a number of dnaK genes have shadow ORFs in the same reverse (relative to dnaK) reading frame, a few of which have been assigned glutamate dehydrogenase activity. The significance of this observation is unclear; lengths of such shadow ORFs are highly variable as if the presumptive protein product is not conserved.

>PF04312 DUF460: Protein of unknown function (DUF460); InterPro: IPR007408 This is an archaeal protein of unknown function

Probab=88.09  E-value=2.7  Score=28.44  Aligned_cols=33  Identities=12%  Similarity=-0.055  Sum_probs=26.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      ...+++|||=|+|.-- +++|. +|+++...+...
T Consensus        30 ~~~lIVGiDPG~ttgi-AildL-~G~~l~l~S~R~   62 (138)
T PF04312_consen   30 RRYLIVGIDPGTTTGI-AILDL-DGELLDLKSSRN   62 (138)
T ss_pred             CCCEEEEECCCceeEE-EEEec-CCcEEEEEeecC
Confidence            4578999999988665 67899 999998766533

>PF03652 UPF0081: Uncharacterised protein family (UPF0081); InterPro: IPR005227 Holliday junction resolvases (HJRs) are key enzymes of DNA recombination

Probab=88.01  E-value=3.3  Score=27.75  Aligned_cols=22  Identities=5%  Similarity=-0.207  Sum_probs=19.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCc
Q psy1582          14 IRDRLSATYHTSRVLIISALTQE   36 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~   36 (129)
                      .+||||+|+..+=.++-|. .+.
T Consensus         2 riL~lD~G~kriGiAvsd~-~~~   23 (135)
T PF03652_consen    2 RILGLDYGTKRIGIAVSDP-LGI   23 (135)
T ss_dssp             EEEEEEECSSEEEEEEEET-TTS
T ss_pred             eEEEEEeCCCeEEEEEecC-CCC
Confidence            5799999999999999998 654

The principal HJRs are now known or confidently predicted for all bacteria and archaea whose genomes have been completely sequenced, with many species encoding multiple potential HJRs. Structural and evolutionary relationships of HJRs and related nucleases suggests that the HJR function has evolved independently from at least four distinct structural folds, namely RNase H, endonuclease, endonuclease VII-colicin E and RusA (IPR008822 from INTERPRO): The endonuclease fold, whose structural prototypes are the phage exonuclease, the very short patch repair nuclease (Vsr) and type II restriction enzymes, is shown to encompass by far a greater diversity of nucleases than previously suspected. This fold unifies archaeal HJRs (IPR002732 from INTERPRO), repair nucleases such as RecB (IPR004586 from INTERPRO) and Vsr (IPR004603 from INTERPRO), restriction enzymes and a variety of predicted nucleases whose specific activities remain to be determined. The RNase H fold characterises the RuvC family (IPR002176 from INTERPRO), which is nearly ubiquitous in bacteria, and in addition the YqgF family (IPR005227 from INTERPRO). The proteins of this family, typified by Escherichia coli YqgF, are likely to function as an alternative to RuvC in most bacteria, but could be the principal HJRs in low-GC Gram-positive bacteria and Aquifex. Endonuclease VII of phage T4 (IPR004211 from INTERPRO) is shown to serve as a structural template for many nucleases, including McrA and other type II restriction enzymes. Together with colicin E7, endonuclease VII defines a distinct metal-dependent nuclease fold. Horizontal gene transfer, lineage-specific gene loss and gene family expansion, and non-orthologous gene displacement seem to have been major forces in the evolution of HJRs and related nucleases. A remarkable case of displacement is seen in the Lyme disease spirochete Borrelia burgdorferi, which does not possess any of the typical HJRs, but instead encodes, in its chromosome and each of the linear plasmids, members of the exonuclease family predicted to function as HJRs. The diversity of HJRs and related nucleases in bacteria and archaea contrasts with their near absence in eukaryotes. The few detected eukaryotic representatives of the endonuclease fold and the RNase H fold have probably been acquired from bacteria via horizontal gene transfer. The identity of the principal HJR(s) involved in recombination in eukaryotes remains uncertain; this function could be performed by topoisomerase IB or by a novel, so far undetected, class of enzymes. Likely HJRs and related nucleases were identified in the genomes of numerous bacterial and eukaryotic DNA viruses. Gene flow between viral and cellular genomes has probably played a major role in the evolution of this class of enzymes. This family represents the YqgF family of putative Holliday junction resolvases. With the exception of the spirochetes, the YqgF family is represented in all bacterial lineages, including the mycoplasmas with their highly degenerate genomes. The RuvC resolvases are conspicuously absent in the low-GC Gram-positive bacterial lineage, with the exception of Ureaplasma parvum (Ureaplasma urealyticum biotype 1) (Q9PQY7 from SWISSPROT, []). Furthermore, loss of function ruvC mutants of E. coli show a residual HJR activity that cannot be ascribed to the prophage-encoded RusA resolvase []. This suggests that the YqgF family proteins could be alternative HJRs whose function partially overlaps with that of RuvC [].; GO: 0016788 hydrolase activity, acting on ester bonds, 0006281 DNA repair, 0006310 DNA recombination, 0006974 response to DNA damage stimulus, 0005737 cytoplasm; PDB: 1NU0_A 1OVQ_A 1NMN_B 1VHX_B 1IV0_A.

>PTZ00009 heat shock 70 kDa protein; Provisional

Probab=87.88  E-value=0.57  Score=39.34  Aligned_cols=22  Identities=9%  Similarity=-0.176  Sum_probs=18.6

Q ss_pred             CCCeEEEEeCCCCceeEEEEeC
Q psy1582          11 PTQIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ....++|||+|||++++++++.
T Consensus         2 ~~~~~iGIDlGTt~s~va~~~~   23 (653)
T PTZ00009          2 TKGPAIGIDLGTTYSCVGVWKN   23 (653)
T ss_pred             CcccEEEEEeCcccEEEEEEeC
Confidence            3456899999999999999874

>PTZ00186 heat shock 70 kDa precursor protein; Provisional

Probab=87.58  E-value=0.81  Score=38.55  Aligned_cols=20  Identities=10%  Similarity=-0.173  Sum_probs=18.1

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..++|||+|||++.+++++.
T Consensus        27 ~~viGIDLGTTnS~vA~~~~   46 (657)
T PTZ00186         27 GDVIGVDLGTTYSCVATMDG   46 (657)
T ss_pred             ceEEEEEeCcCeEEEEEEeC
Confidence            46899999999999999985

>PRK12440 acetate kinase; Reviewed

Probab=87.33  E-value=1.5  Score=34.85  Aligned_cols=33  Identities=15%  Similarity=0.141  Sum_probs=25.6

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHS   42 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~   42 (129)
                      |...++|.|..|++|+|+.|||....+++.+..
T Consensus         1 ~~~~~ILviN~GSSSlKf~l~~~~~~~~l~~G~   33 (397)
T PRK12440          1 MSNSYVLVINSGSSSLKFAVIDSVTGEAVLSGL   33 (397)
T ss_pred             CCCCEEEEEECChHhheEEEEecCCCceEEEEE
Confidence            456899999999999999999963445555443

>PF00012 HSP70: Hsp70 protein; InterPro: IPR013126 Heat shock proteins, Hsp70 chaperones help to fold many proteins

Probab=86.89  E-value=0.56  Score=38.47  Aligned_cols=18  Identities=11%  Similarity=0.067  Sum_probs=15.6

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      ++|||+|||++++++++.
T Consensus         1 viGID~Gt~~~~va~~~~   18 (602)
T PF00012_consen    1 VIGIDLGTTNSKVAVFKN   18 (602)
T ss_dssp             EEEEEE-SSEEEEEEEET
T ss_pred             CEEEEeccCCEEEEEEEe
Confidence            689999999999999985

Hsp70 assisted folding involves repeated cycles of substrate binding and release. Hsp70 activity is ATP dependent. Hsp70 proteins are made up of two regions: the amino terminus is the ATPase domain and the carboxyl terminus is the substrate binding region []. Hsp70 proteins have an average molecular weight of 70 kDa [, , ]. In most species,there are many proteins that belong to the hsp70 family. Some of these are only expressed under stress conditions (strictly inducible), while some are present in cells under normal growth conditions and are not heat-inducible (constitutive or cognate) [, ]. Hsp70 proteins can be found in different cellular compartments(nuclear, cytosolic, mitochondrial, endoplasmic reticulum, for example).; PDB: 2P32_D 3D2F_A 2QXL_A 3D2E_C 3C7N_A 3FE1_C 4ANI_C 2V7Y_A 2KHO_A 3DPQ_B ....

>KOG2707|consensus

Probab=86.81  E-value=2.2  Score=33.44  Aligned_cols=82  Identities=12%  Similarity=0.145  Sum_probs=52.8

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEE-eeeccccCCCCeEEECH-HHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHS-MDISTISPQEGWAEQDP-MEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~-~~~~~~~~~~g~~~~~~-~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|||.-.=.-+-++|+|. .++++.+.. ..........|....-. ..--+.+...+++++..   ++.++.++.+|++
T Consensus        34 VLgIETSCDDTavaVVd~-~~~~~~~~i~~~t~~~~~yGGI~P~~a~~~Hr~ni~~~iqral~a---a~~~p~dldaIAV  109 (405)
T KOG2707|consen   34 VLGIETSCDDTAVAVVDE-FSHVLSSEIYSRTEIHRQYGGIIPTVAQLLHRENIPRLIQRALDA---AGLSPKDLDAIAV  109 (405)
T ss_pred             eeeEecccCcceeeeecc-cccccchhhhhhhHHHHhhCCCCChHHHHHHHHHHHHHHHHHHHH---cCCCcccceeEEE
Confidence            899998888899999998 888887632 11112222333222111 11223466666777765   7999999999999


Q ss_pred             ecCcceEEE
Q psy1582          93 TNQRETTVV  101 (129)
Q Consensus        93 s~~~~g~v~  101 (129)
                      +. +||+..
T Consensus       110 T~-gPGl~l  117 (405)
T KOG2707|consen  110 TR-GPGLPL  117 (405)
T ss_pred             ec-CCCcee
Confidence            86 677643

>PRK00976 hypothetical protein; Provisional

Probab=86.74  E-value=4.1  Score=31.55  Aligned_cols=19  Identities=16%  Similarity=0.072  Sum_probs=17.3

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      +++|||=|||.+|+++.+.
T Consensus         2 ~~~g~dhgt~~~~~~~~~~   20 (326)
T PRK00976          2 MFVGIDHGTTGIRFAIIEG   20 (326)
T ss_pred             eEEeecCCCccEEEEEEcC
Confidence            5899999999999999964

>PRK05183 hscA chaperone protein HscA; Provisional

Probab=86.59  E-value=0.79  Score=38.24  Aligned_cols=21  Identities=10%  Similarity=0.074  Sum_probs=18.3

Q ss_pred             CCeEEEEeCCCCceeEEEEeC
Q psy1582          12 TQIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..+++|||+|||++.+++++.
T Consensus        18 ~~~~iGIDlGTt~s~va~~~~   38 (616)
T PRK05183         18 RRLAVGIDLGTTNSLVATVRS   38 (616)
T ss_pred             CCeEEEEEeccccEEEEEEEC
Confidence            347999999999999999864

>COG0443 DnaK Molecular chaperone [Posttranslational modification, protein turnover, chaperones]

Probab=86.44  E-value=0.89  Score=37.76  Aligned_cols=20  Identities=10%  Similarity=0.029  Sum_probs=18.5

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..++|||+|||++-+++++.
T Consensus         5 ~~~iGIDlGTTNS~vA~~~~   24 (579)
T COG0443           5 KKAIGIDLGTTNSVVAVMRG   24 (579)
T ss_pred             ceEEEEEcCCCcEEEEEEeC
Confidence            47899999999999999996

>PF06277 EutA: Ethanolamine utilisation protein EutA; InterPro: IPR009377 Proteins in this entry are EutA ethanolamine utilization proteins, reactivating factors for ethanolamine ammonia lyase, encoded by the ethanolamine utilization eut operon

Probab=85.83  E-value=3  Score=33.82  Aligned_cols=16  Identities=6%  Similarity=0.171  Sum_probs=13.2

Q ss_pred             eEEEEeCCCCceeEEE
Q psy1582          14 IRDRLSATYHTSRVLI   29 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l   29 (129)
                      +-+|||||||.++.++
T Consensus         4 ~SVGIDIGTSTTQlvf   19 (473)
T PF06277_consen    4 LSVGIDIGTSTTQLVF   19 (473)
T ss_pred             EEEEEeecCCceeEEE
Confidence            4689999999998654

The holoenzyme of adenosylcobalamin-dependent ethanolamine ammonia-lyase (EutBC, IPR0092462 from INTERPRO, IPR010628 from INTERPRO), which is part of the ethanolamine utilization pathway [, , ], undergoes suicidal inactivation during catalysis as well as inactivation in the absence of substrate. The inactivation involves the irreversible cleavage of the Co-C bond of the coenzyme. The inactivated holoenzyme undergoes rapid and continuous reactivation in the presence of ATP, Mg2+, and free adenosylcobalamin in permeabilised cells (in situ), homogenate, and cell extracts of Escherichia coli. The EutA protein is essential for reactivation. It was demonstrated with purified recombinant EutA that both the suicidally inactivated and O2-inactivated holoethanolamine ammonia lyase underwent rapid reactivation in vitro by EutA in the presence of adenosylcobalamin, ATP, and Mg2+ []. The inactive enzyme-cyanocobalamin complex was also activated in situ and in vitro by EutA under the same conditions. Thus EutA is believed to be the only component of the reactivating factor for ethanolamine ammonia lyase. Reactivation and activation occur through the exchange of modified coenzyme for free intact adenosylcobalamin []. Bacteria that harbor the ethanolamine utilization pathway can use ethanolamine as a source of carbon and nitrogen. For more information on the ethanolamine utilization pathway, please see IPR009194 from INTERPRO, IPR012408 from INTERPRO.

>COG2183 Tex Transcriptional accessory protein [Transcription]

Probab=84.64  E-value=4.6  Score=34.73  Aligned_cols=67  Identities=15%  Similarity=0.297  Sum_probs=42.5

Q ss_pred             CCeEEEEeCCCCc-eeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          12 TQIRDRLSATYHT-SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        12 ~~~~lgiDiGtt~-ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      .+.++|+|-|.-. +|.+++|. +|+.+....+ |    |+      .|...++.....+..++..   .+   =++.+|
T Consensus       329 ~~~~lglDPg~rtG~k~Avvd~-tGk~l~~~~I-y----p~------~p~~~~~~~~~~l~~l~~~---~~---Ve~iaI  390 (780)
T COG2183         329 PKATLGLDPGFRTGCKVAVVDD-TGKLLDTATI-Y----PH------PPVNQSDKAEATLKDLIRK---YK---VELIAI  390 (780)
T ss_pred             CcceeecCCccccccEEEEEcC-CCceeceeEE-E----cC------CCccchHHHHHHHHHHHHH---hC---ceEEEE
Confidence            4578999999755 99999999 8999876543 2    11      2222244555555566554   12   246677


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      |.++..
T Consensus       391 GngTaS  396 (780)
T COG2183         391 GNGTAS  396 (780)
T ss_pred             ecCCcc
Confidence            777653

>PTZ00400 DnaK-type molecular chaperone; Provisional

Probab=84.24  E-value=1.1  Score=37.87  Aligned_cols=19  Identities=16%  Similarity=-0.022  Sum_probs=17.1

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus        42 ~viGIDlGTt~s~va~~~~   60 (663)
T PTZ00400         42 DIVGIDLGTTNSCVAIMEG   60 (663)
T ss_pred             cEEEEEECcccEEEEEEeC
Confidence            5899999999999999874

>PF07736 CM_1: Chorismate mutase type I; InterPro: IPR008243 Chorismate mutase (CM; 5

Probab=84.23  E-value=2.8  Score=27.68  Aligned_cols=36  Identities=33%  Similarity=0.537  Sum_probs=29.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      .++++++++..+.+++++++   +++++++|.+|=|+..
T Consensus        13 n~~e~I~~at~eLl~~i~~~---N~l~~~dIvSi~FT~T   48 (118)
T PF07736_consen   13 NTPEEILEATRELLEEILER---NELSPEDIVSIIFTVT   48 (118)
T ss_dssp             SSHHHHHHHHHHHHHHHHHH---TT--GGGEEEEEEEE-
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence            46899999999999999987   8999999999999865

4.99.5 from EC) catalyses the reaction at the branch point of the biosynthetic pathway leading to the three aromatic amino acids, phenylalanine, tryptophan and tyrosine (chorismic acid is the last common intermediate, and CM leads to the L-phenylalanine/L-tyrosine branch). It is part of the shikimate pathway, which is present only in bacteria, fungi and plants. This entry represents a family of monofunctional (non-fused) chorismate mutases from Gram-positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus). They are monofunctional, homotrimeric, nonallosteric enzymes and are not regulated by the end-product aromatic amino acids. The three types of CM are AroQ class, Prokaryotic type (e.g., IPR008239 from INTERPRO amongst others); AroQ class, Eukaryotic type (IPR008238 from INTERPRO); and AroH class. They fall into two structural folds (AroQ class and AroH class) which are completely unrelated []. The two types of the AroQ structural class (the Escherichia coli CM dimer and the yeast CM monomer) can be structurally superimposed, and the topology of the four-helix bundle forming the active site is conserved []. For additional information please see [, , , , , , ].; PDB: 2CHS_K 2CHT_L 1COM_J 1FNJ_A 1FNK_A 1DBF_C 1UI9_A 1ODE_A 1UFY_A 1XHO_C ....

>PRK13322 pantothenate kinase; Reviewed

Probab=83.57  E-value=1.2  Score=32.91  Aligned_cols=24  Identities=8%  Similarity=-0.035  Sum_probs=19.9

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVV   39 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~   39 (129)
                      +|.||+|.|++|.++++. +++++.
T Consensus         2 ~L~IDiGNT~iK~~l~~~-~~~~~~   25 (246)
T PRK13322          2 ILELDCGNSRLKWRVIDN-GGQIIE   25 (246)
T ss_pred             EEEEEeCCCcEEEEEEcC-CCchhh
Confidence            688999999999999995 455544

>cd00529 RuvC_resolvase Holliday junction resolvases (HJRs) are endonucleases that specifically resolve Holliday junction DNA intermediates during homologous recombination

Probab=83.44  E-value=12  Score=25.52  Aligned_cols=53  Identities=9%  Similarity=0.097  Sum_probs=32.3

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEE---EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv---~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      +||||-|.+++=.++++. ++..+   +-....++     +.   .+..+=+..+.+.+.+++..
T Consensus         2 ILGIDPGl~~~G~av~~~-~~~~~~~~~~g~i~t~-----~~---~~~~~rl~~I~~~l~~~i~~   57 (154)
T cd00529           2 ILGIDPGSRNTGYGVIEQ-EGRKLIYLASGVIRTS-----SD---APLPSRLKTIYDGLNEVIDQ   57 (154)
T ss_pred             EEEEccCcCceEEEEEEe-eCCeEEEEEeeEEECC-----CC---CCHHHHHHHHHHHHHHHHHH
Confidence            799999999999999997 44332   22233322     11   12233345566677777765

HJR's occur in archaea, bacteria, and in the mitochondria of certain fungi, however this CD includes only the bacterial and mitochondrial HJR's. These are referred to as the RuvC family of Holliday junction resolvases, RuvC being the E.coli HJR. RuvC and its orthologs are homodimers and are structurely similar to RNase H and Hsp70.

>TIGR00016 ackA acetate kinase

Probab=83.28  E-value=2.9  Score=33.35  Aligned_cols=29  Identities=7%  Similarity=-0.023  Sum_probs=22.3

Q ss_pred             CeEEEEeCCCCceeEEEEeCCC-CcEEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALT-QEEVVSH   41 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~-g~iv~~~   41 (129)
                      +.+|.|..|++|+|+.+||..+ .+++.+.
T Consensus         4 m~iLvlN~GSSSlKf~lf~~~~~~~~l~~G   33 (404)
T TIGR00016         4 MKILVINAGSSSLKFALFDYTNGETVLLSG   33 (404)
T ss_pred             CeEEEEECChHhheEEEEecCCCCceEEEE
Confidence            3489999999999999999723 3555544

Acetate kinase is involved in the activation of acetate to acetyl CoA and in the secretion of acetate. It catalyzes the reaction ATP + acetate = ADP + acetyl phosphate. Some members of this family have been shown to act on propionate as well as acetate. An example of a propionate/acetate kinase is TdcD of E. coli, an enzyme of an anaerobic pathway of threonine catabolism. It is not known how many members of this family act on additional substrates besides acetate.

>PRK01433 hscA chaperone protein HscA; Provisional

Probab=83.19  E-value=1.5  Score=36.51  Aligned_cols=19  Identities=21%  Similarity=0.125  Sum_probs=17.0

Q ss_pred             CeEEEEeCCCCceeEEEEe
Q psy1582          13 QIRDRLSATYHTSRVLIIS   31 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d   31 (129)
                      ..++|||+|||++.++++.
T Consensus        19 ~~viGIDlGTT~S~va~~~   37 (595)
T PRK01433         19 QIAVGIDFGTTNSLIAIAT   37 (595)
T ss_pred             ceEEEEEcCcccEEEEEEe
Confidence            4689999999999999885

>PLN03184 chloroplast Hsp70; Provisional

Probab=83.08  E-value=1.5  Score=37.02  Aligned_cols=19  Identities=11%  Similarity=-0.041  Sum_probs=17.3

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus        40 ~viGIDlGTt~s~va~~~~   58 (673)
T PLN03184         40 KVVGIDLGTTNSAVAAMEG   58 (673)
T ss_pred             CEEEEEeCcCcEEEEEEEC
Confidence            5899999999999999974

>PF05035 DGOK: 2-keto-3-deoxy-galactonokinase; InterPro: IPR007729 2-keto-3-deoxy-galactonokinase 2

Probab=82.07  E-value=1.8  Score=32.85  Aligned_cols=27  Identities=7%  Similarity=0.090  Sum_probs=19.6

Q ss_pred             eCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582          19 SATYHTSRVLIISALTQEEVVSHSMDIS   46 (129)
Q Consensus        19 DiGtt~ik~~l~d~~~g~iv~~~~~~~~   46 (129)
                      |=|||++|+.++|. +|+++.+.+.+..
T Consensus         1 DWGTSnlR~~l~~~-~g~vl~~~~~~~G   27 (287)
T PF05035_consen    1 DWGTSNLRAWLMDE-DGQVLAERSSPVG   27 (287)
T ss_dssp             EE-SS-EEEEEE-C-TTEEEEEEEES--
T ss_pred             CCchhhhhhheecC-CCcEEeeecCCcC
Confidence            67999999999998 8999998876554

7.1.58 from EC is a bacterial transferase that catalyses the second step in D-galactonate degradation. ATP + 2-dehydro-3-deoxy-D-galactonate = ADP + 2-dehydro-3-deoxy-D-galactonate 6-phosphate D-Galactonate is catabolized in saprophytic mycobacteria to give pyruvate and glyceraldehyde-3-phosphate by a pathway that involves galactonate dehydratase, 2-keto-3-deoxy-galactonate kinase, and 6-phospho-2-keto-3-deoxy-galactonate aldolase [].; PDB: 3R1X_D 3T69_B.

>cd02185 AroH Chorismate mutase (AroH) is one of at least five chorismate-utilizing enzymes present in microorganisms that catalyze the rearrangement of chorismate to prephenic acid, the first committed step in the biosynthesis of aromatic amino acids

Probab=81.89  E-value=2.8  Score=27.57  Aligned_cols=36  Identities=25%  Similarity=0.449  Sum_probs=31.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      .++++++++..+.+++++++   +++.+++|.+|-|+..
T Consensus        13 nt~e~I~~at~eLl~~i~~~---N~l~~edivSv~FT~T   48 (117)
T cd02185          13 NTAEEILEATRELLEEIIER---NNIKPEDIISVIFTVT   48 (117)
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence            46789999999999999987   8999999999999875

In prokaryotes, chorismate mutase may be fused to prephenate dehydratase, prephenate dehydrogenase, or 3-deoxy-D-arabino-heptulosonat-7-phosphate (DAHP) as part of a bifunctional enzyme. The AroH domain forms a homotrimer with three-fold symmetry.

>TIGR01796 CM_mono_aroH monofunctional chorismate mutase, gram positive type, clade 1

Probab=81.40  E-value=3  Score=27.45  Aligned_cols=37  Identities=22%  Similarity=0.365  Sum_probs=32.2

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecCc
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQR   96 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~~   96 (129)
                      .+.++++++..+.+.+++++   +++++++|.+|-|+..-
T Consensus        13 nt~e~I~~at~eLl~~ii~~---N~l~~edivSv~FT~T~   49 (117)
T TIGR01796        13 NEAEEIGEAVAELLTELMER---NELTPEDLISVIFTVTE   49 (117)
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEecC
Confidence            46788999999999999987   89999999999998753

This model represents a family of monofunctional (non-fused) chorismate mutases from gram positive bacteria (Firmicutes) and cyanobacteria. Trusted members of the family are found in operons with other enzymes of the chorismate pathways, both up- and downstream of CM (Listeria, Bacillus, Oceanobacillus) or are the sole CM in the genome where the other members of the chorismate pathways are found elsewhere in the genome (Nostoc, Thermosynechococcus).

>PRK11678 putative chaperone; Provisional

Probab=81.36  E-value=1.7  Score=34.97  Aligned_cols=18  Identities=6%  Similarity=-0.068  Sum_probs=16.3

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      ++|||+|||++-+++++.
T Consensus         2 ~iGID~GTtNs~va~~~~   19 (450)
T PRK11678          2 FIGFDYGTANCSVAVMRD   19 (450)
T ss_pred             eEEEecCccceeeEEeeC
Confidence            589999999999999974

>PRK10719 eutA reactivating factor for ethanolamine ammonia lyase; Provisional

Probab=81.00  E-value=5.5  Score=32.39  Aligned_cols=17  Identities=12%  Similarity=0.178  Sum_probs=13.7

Q ss_pred             CeEEEEeCCCCceeEEE
Q psy1582          13 QIRDRLSATYHTSRVLI   29 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l   29 (129)
                      -.-+|||||||.++.++
T Consensus         6 i~SVGIDIGTsTTqlvf   22 (475)
T PRK10719          6 LLSVGIDIGTTTTQVIF   22 (475)
T ss_pred             EEEEEEeccCceEEEEE
Confidence            36789999999997644

>PRK00109 Holliday junction resolvase-like protein; Reviewed

Probab=81.00  E-value=8.2  Score=25.95  Aligned_cols=24  Identities=8%  Similarity=-0.143  Sum_probs=20.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEE   37 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~i   37 (129)
                      +.+||||+|+-.+=.++.|. .+.+
T Consensus         4 ~~iLalD~G~kriGvAv~d~-~~~~   27 (138)
T PRK00109          4 GRILGLDVGTKRIGVAVSDP-LGGT   27 (138)
T ss_pred             CcEEEEEeCCCEEEEEEecC-CCCE
Confidence            34899999999999999997 6643

>TIGR01991 HscA Fe-S protein assembly chaperone HscA

Probab=80.80  E-value=1.5  Score=36.57  Aligned_cols=18  Identities=11%  Similarity=-0.012  Sum_probs=16.3

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      ++|||+|||++.+++++.
T Consensus         1 ~iGIDlGTtns~va~~~~   18 (599)
T TIGR01991         1 AVGIDLGTTNSLVASVRS   18 (599)
T ss_pred             CEEEEEccccEEEEEEEC
Confidence            489999999999999985

The Heat Shock Cognate proteins HscA and HscB act together as chaperones. HscA resembles DnaK but belongs in a separate clade. The apparent function is to aid assembly of iron-sulfur cluster proteins. Homologs from Buchnera and Wolbachia are clearly in the same clade but are highly derived and score lower than some examples of DnaK.

>PRK07157 acetate kinase; Provisional

Probab=80.40  E-value=3.9  Score=32.56  Aligned_cols=28  Identities=7%  Similarity=-0.084  Sum_probs=22.2

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHS   42 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~   42 (129)
                      +|.|..|++|+|+.|||..+.+++.+..
T Consensus         5 iLvlN~GSSSlKf~lf~~~~~~~l~~G~   32 (400)
T PRK07157          5 ILVINAGSSSIKWQLFDKENLNLIASGL   32 (400)
T ss_pred             EEEEECChHhheeEEEECCCCcEEEEEE
Confidence            8999999999999999963345555443

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

ID	Length	Definition	E-value
Query	129
4e1j_A	520	Crystal Structure Of Glycerol Kinase In Complex Wit		1e-15
3ezw_A	526	Crystal Structure Of A Hyperactive Escherichia Coli		3e-14
1gla_G	501	Structure Of The Regulatory Complex Of Escherichia		3e-14
1bu6_O	501	Crystal Structures Of Escherichia Coli Glycerol Kin		4e-14
1bwf_Y	501	Escherichia Coli Glycerol Kinase Mutant With Bound		8e-14
2dpn_A	495	Crystal Structure Of The Glycerol Kinase From Therm		1e-13
2d4w_A	504	Crystal Structure Of Glycerol Kinase From Cellulomo		1e-11
3g25_A	501	1.9 Angstrom Crystal Structure Of Glycerol Kinase (		8e-11
1xup_O	487	Enterococcus Casseliflavus Glycerol Kinase Complexe		1e-10
1r59_O	505	Enterococcus Casseliflavus Glycerol Kinase Length =		2e-10
3h45_X	506	Glycerol Kinase H232e With Ethylene Glycol Length =		2e-10
3h3n_X	506	Glycerol Kinase H232r With Glycerol Length = 506		2e-10
3d7e_O	505	Enterococcus Casseliflavus Glycerol Kinase Mutant H		2e-10
3flc_O	518	Crystal Structure Of The His-Tagged H232r Mutant Of		2e-10
2w41_A	507	Crystal Structure Of Plasmodium Falciparum Glycerol		3e-10
2w40_A	503	Crystal Structure Of Plasmodium Falciparum Glycerol		3e-10
2zf5_O	497	Crystal Structure Of Highly Thermostable Glycerol K		4e-09

>pdb|4E1J|A Chain A, Crystal Structure Of Glycerol Kinase In Complex With Glycerol From Sinorhizobium Meliloti 1021 Length = 520

Iteration: 1
 Score = 78.2 bits (191), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 40/85 (47%), Positives = 53/85 (62%), Gaps = 10/85 (11%)
Query: 30  ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89
           I+ + Q+E   H        P+ GW E DP EI Q V +T+  AIEK    G++ +DI  
Sbjct: 49  IAGVGQKEFKQHF-------PKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIAA 98
Query: 90  LGITNQRETTVVWDLNTGEPLYNAI 114
           +GITNQRET VVWD  TG+P++NAI
Sbjct: 99  IGITNQRETVVVWDRETGKPIHNAI 123

>pdb|3EZW|A Chain A, Crystal Structure Of A Hyperactive Escherichia Coli Glycerol Kinase Mutant Gly230 --> Asp Obtained Using Microfluidic Crystallization Devices Length = 526

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44  DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103
           +   I P+ GW E DPMEI     +T+   +E L+   +S D I  +GITNQRETT+VW+
Sbjct: 34  EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 104 LNTGEPLYNAI 114
             TG+P+YNAI
Sbjct: 91  KETGKPIYNAI 101

>pdb|1GLA|G Chain G, Structure Of The Regulatory Complex Of Escherichia Coli Iiiglc With Glycerol Kinase Length = 501

Iteration: 1
 Score = 73.2 bits (178), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44  DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103
           +   I P+ GW E DPMEI     +T+   +E L+   +S D I  +GITNQRETT+VW+
Sbjct: 34  EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 104 LNTGEPLYNAI 114
             TG+P+YNAI
Sbjct: 91  KETGKPIYNAI 101

>pdb|1BU6|O Chain O, Crystal Structures Of Escherichia Coli Glycerol Kinase And The Mutant A65t In An Inactive Tetramer: Conformational Changes And Implications For Allosteric Regulation Length = 501

Iteration: 1
 Score = 73.2 bits (178), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 46/71 (64%), Gaps = 3/71 (4%)
Query: 44  DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103
           +   I P+ GW E DPMEI     +T+   +E L+   +S D I  +GITNQRETT+VW+
Sbjct: 34  EFEQIYPKPGWVEHDPMEIWATQSSTL---VEVLTKADISSDQIAAIGITNQRETTIVWE 90
Query: 104 LNTGEPLYNAI 114
             TG+P+YNAI
Sbjct: 91  KETGKPIYNAI 101

>pdb|1BWF|Y Chain Y, Escherichia Coli Glycerol Kinase Mutant With Bound Atp Analog Showing Substantial Domain Motion Length = 501

Iteration: 1
 Score = 72.0 bits (175), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 34/71 (47%), Positives = 45/71 (63%), Gaps = 3/71 (4%)
Query: 44  DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWD 103
           +   I P+ GW E DPMEI      T+   +E L+   +S D I  +GITNQRETT+VW+
Sbjct: 34  EFEQIYPKPGWVEHDPMEIWATQSWTL---VEVLAKADISSDQIAAIGITNQRETTIVWE 90
Query: 104 LNTGEPLYNAI 114
             TG+P+YNAI
Sbjct: 91  KETGKPIYNAI 101

>pdb|2DPN|A Chain A, Crystal Structure Of The Glycerol Kinase From Thermus Thermophilus Hb8 Length = 495

Iteration: 1
 Score = 71.2 bits (173), Expect = 1e-13,   Method: Composition-based stats.
 Identities = 38/91 (41%), Positives = 52/91 (57%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   I+  L    V     +   + P+ GW E DP+EI +   TT+  A E L   G  
Sbjct: 12  TSSRAILFTLEGRPVAVAKREFRQLYPKPGWVEHDPLEIWE---TTLWAAREVLRRAGAE 68
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             +++ LGITNQRETT++WD  TG+PL+NAI
Sbjct: 69  AGEVLALGITNQRETTLLWDRKTGKPLHNAI 99

>pdb|2D4W|A Chain A, Crystal Structure Of Glycerol Kinase From Cellulomonas Sp. Nt3060 Length = 504

Iteration: 1
 Score = 64.7 bits (156), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 36/85 (42%), Positives = 49/85 (57%), Gaps = 11/85 (12%)
Query: 38  VVSHSMDIST--------ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89
           V  HS +I +        I P+ GW E +P +I   V+  +  A   L+   L+ +DI  
Sbjct: 18  VFDHSGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLA---LTRGNLTHEDIAA 74
Query: 90  LGITNQRETTVVWDLNTGEPLYNAI 114
           +GITNQRET VVWD  TG+P+YNAI
Sbjct: 75  VGITNQRETAVVWDKTTGKPVYNAI 99

>pdb|3G25|A Chain A, 1.9 Angstrom Crystal Structure Of Glycerol Kinase (Glpk) From Staphylococcus Aureus In Complex With Glycerol. Length = 501

Iteration: 1
 Score = 62.0 bits (149), Expect = 8e-11,   Method: Composition-based stats.
 Identities = 31/65 (47%), Positives = 40/65 (61%), Gaps = 3/65 (4%)
Query: 50  PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 109
           PQ GW E D  EI  +V        E ++ + +  D I  +GITNQRETTVVWD +TG P
Sbjct: 42  PQSGWVEHDANEIWTSVLAV---XTEVINENDVRADQIAGIGITNQRETTVVWDKHTGRP 98
Query: 110 LYNAI 114
           +Y+AI
Sbjct: 99  IYHAI 103

>pdb|1XUP|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Complexed With Glycerol Length = 487

Iteration: 1
 Score = 61.6 bits (148), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 10  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 66
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 67  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 97

>pdb|1R59|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Length = 505

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 14  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 70
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 71  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 101

>pdb|3H45|X Chain X, Glycerol Kinase H232e With Ethylene Glycol Length = 506

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 15  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 71
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 72  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 102

>pdb|3H3N|X Chain X, Glycerol Kinase H232r With Glycerol Length = 506

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 15  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 71
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 72  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 102

>pdb|3D7E|O Chain O, Enterococcus Casseliflavus Glycerol Kinase Mutant His232ala Complexed With Glycerol Length = 505

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 14  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 70
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 71  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 101

>pdb|3FLC|O Chain O, Crystal Structure Of The His-Tagged H232r Mutant Of Glycerol Kinase From Enterococcus Casseliflavus With Glycerol Length = 518

Iteration: 1
 Score = 60.8 bits (146), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 35/91 (38%), Positives = 50/91 (54%), Gaps = 3/91 (3%)
Query: 24  TSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS 83
           TS   II     +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+ 
Sbjct: 27  TSSRAIIFDRNGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIR 83
Query: 84  RDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + I  +GITNQRETTVVWD  TG+P+ NAI
Sbjct: 84  PEAIAGIGITNQRETTVVWDKTTGQPIANAI 114

>pdb|2W41|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Adp Length = 507

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 51  QEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 110
           + GW E DP+EI+  +   M+  I+ L     S   I  +GITNQRET ++WD  TG+PL
Sbjct: 45  KPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPL 103
Query: 111 YNAI 114
           YNAI
Sbjct: 104 YNAI 107

>pdb|2W40|A Chain A, Crystal Structure Of Plasmodium Falciparum Glycerol Kinase With Bound Glycerol Length = 503

Iteration: 1
 Score = 60.1 bits (144), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 30/64 (46%), Positives = 40/64 (62%), Gaps = 1/64 (1%)
Query: 51  QEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEPL 110
           + GW E DP+EI+  +   M+  I+ L     S   I  +GITNQRET ++WD  TG+PL
Sbjct: 41  KPGWYEHDPIEIMTNLYNLMNEGIKVLKDKYTSVI-IKCIGITNQRETVIIWDRITGKPL 99
Query: 111 YNAI 114
           YNAI
Sbjct: 100 YNAI 103

>pdb|2ZF5|O Chain O, Crystal Structure Of Highly Thermostable Glycerol Kinase From A Hyperthermophilic Archaeon Length = 497

Iteration: 1
 Score = 56.6 bits (135), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 29/65 (44%), Positives = 40/65 (61%), Gaps = 4/65 (6%)
Query: 50  PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTGEP 109
           P+ GW E +P EI  A    +  AI+      +  + I  +G+TNQRETT+VWD + G+P
Sbjct: 39  PRPGWVEHNPEEIWDAQLRAIKDAIQSAR---IEPNQIAAIGVTNQRETTLVWDKD-GKP 94
Query: 110 LYNAI 114
           LYNAI
Sbjct: 95  LYNAI 99

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

ID	Length	Definition	E-value
Query	129
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	2e-29
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	3e-27
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	4e-27
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	4e-27
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	4e-27
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	4e-27
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	6e-27
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	3e-25
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	2e-19
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	1e-14
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	3e-13
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	2e-12
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	7e-12
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	2e-10
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	2e-09
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	8e-08
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	8e-06

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A* Length = 503

 Score =  109 bits (276), Expect = 2e-29
 Identities = 32/90 (35%), Positives = 49/90 (54%), Gaps = 2/90 (2%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
           ++V          V S++++      + GW E DP+EI+  +   M+  I+ L     + 
Sbjct: 16  TKVFFYDE-ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKVLKD-KYTS 73

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             I  +GITNQRET ++WD  TG+PLYNAI
Sbjct: 74  VIIKCIGITNQRETVIIWDRITGKPLYNAI 103

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP} Length = 504

 Score =  103 bits (260), Expect = 3e-27
 Identities = 31/67 (46%), Positives = 43/67 (64%), Gaps = 3/67 (4%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
           I P+ GW E +P +I   V+  +  A+ +     L+ +DI  +GITNQRET VVWD  TG
Sbjct: 36  IFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHEDIAAVGITNQRETAVVWDKTTG 92

Query: 108 EPLYNAI 114
           +P+YNAI
Sbjct: 93  KPVYNAI 99

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O Length = 506

 Score =  103 bits (259), Expect = 4e-27
 Identities = 31/79 (39%), Positives = 46/79 (58%), Gaps = 3/79 (3%)

Query: 36  EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ 95
           +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+  + I  +GITNQ
Sbjct: 27  KKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGITNQ 83

Query: 96  RETTVVWDLNTGEPLYNAI 114
           RETTVVWD  TG+P+ NAI
Sbjct: 84  RETTVVWDKTTGQPIANAI 102

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti} Length = 520

 Score =  103 bits (259), Expect = 4e-27
 Identities = 36/67 (53%), Positives = 46/67 (68%), Gaps = 3/67 (4%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
             P+ GW E DP EI Q V +T+  AIEK    G++ +DI  +GITNQRET VVWD  TG
Sbjct: 60  HFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGITANDIAAIGITNQRETVVVWDRETG 116

Query: 108 EPLYNAI 114
           +P++NAI
Sbjct: 117 KPIHNAI 123

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A* Length = 501

 Score =  102 bits (258), Expect = 4e-27
 Identities = 32/67 (47%), Positives = 40/67 (59%), Gaps = 3/67 (4%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
             PQ GW E D  EI  +V   M   I +   + +  D I  +GITNQRETTVVWD +TG
Sbjct: 40  YFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQIAGIGITNQRETTVVWDKHTG 96

Query: 108 EPLYNAI 114
            P+Y+AI
Sbjct: 97  RPIYHAI 103

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus} Length = 495

 Score =  102 bits (257), Expect = 6e-27
 Identities = 28/67 (41%), Positives = 41/67 (61%), Gaps = 3/67 (4%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
           + P+ GW E DP+EI +         + +    G    +++ LGITNQRETT++WD  TG
Sbjct: 36  LYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGEVLALGITNQRETTLLWDRKTG 92

Query: 108 EPLYNAI 114
           +PL+NAI
Sbjct: 93  KPLHNAI 99

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis} Length = 497

 Score = 98.0 bits (245), Expect = 3e-25
 Identities = 29/67 (43%), Positives = 39/67 (58%), Gaps = 4/67 (5%)

Query: 48  ISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQRETTVVWDLNTG 107
             P+ GW E +P EI  A    +  AI+      +  + I  +G+TNQRETT+VWD   G
Sbjct: 37  HYPRPGWVEHNPEEIWDAQLRAIKDAIQS---ARIEPNQIAAIGVTNQRETTLVWD-KDG 92

Query: 108 EPLYNAI 114
           +PLYNAI
Sbjct: 93  KPLYNAI 99

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A* Length = 504

 Score = 81.5 bits (202), Expect = 2e-19
 Identities = 20/90 (22%), Positives = 36/90 (40%), Gaps = 8/90 (8%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
           ++ ++      + V S S     I  + G AE+DP  I  AVQ  +    +K        
Sbjct: 16  TKGVLYDI-NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQK------ID 68

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
             I  +  ++Q  + +    +  E L N+I
Sbjct: 69  GKIAAISWSSQMHSLIGLGSD-DELLTNSI 97

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum} Length = 508

 Score = 67.6 bits (166), Expect = 1e-14
 Identities = 19/93 (20%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 24  TS--RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG 81
           T+    +++       V   S   +  SP  GWAE+DP +     +  +          G
Sbjct: 16  TTSTIAILVRL-PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AG 71

Query: 82  LSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            S      + +T      V+ D   G  L  +I
Sbjct: 72  ESDWRPGGICVTGMLPAVVLLDDR-GAVLRPSI 103

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A* Length = 511

 Score = 63.8 bits (156), Expect = 3e-13
 Identities = 16/81 (19%), Positives = 29/81 (35%), Gaps = 5/81 (6%)

Query: 34  TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT 93
                   S+ + T     G  EQD  +   AVQ             G+    +  + ++
Sbjct: 25  DGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQR----IASSWWQSGVDARRVSAIVLS 80

Query: 94  NQRETTVVWDLNTGEPLYNAI 114
            Q +  +  D +  EPL+ A+
Sbjct: 81  GQMQNFLPLDQD-HEPLHRAV 100

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A* Length = 489

 Score = 61.9 bits (151), Expect = 2e-12
 Identities = 14/85 (16%), Positives = 33/85 (38%), Gaps = 11/85 (12%)

Query: 30  ISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT 89
             +LT  E+  H  + + +  Q G+   D   +  A++  +++          +   I +
Sbjct: 27  CRSLTLREI--HRFN-NGLHSQNGYVTWDVDSLESAIRLGLNKV-------CAAGIAIDS 76

Query: 90  LGITNQRETTVVWDLNTGEPLYNAI 114
           +GI       V+ D   G+ +   +
Sbjct: 77  IGIDTWGVDFVLLDQQ-GQRVGLPV 100

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A Length = 484

 Score = 59.9 bits (146), Expect = 7e-12
 Identities = 24/93 (25%), Positives = 39/93 (41%), Gaps = 9/93 (9%)

Query: 24  TS--RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG 81
           TS  +V++++    E V + +  ++   P   W+EQDP +  QA    M    ++ S   
Sbjct: 9   TSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQHSL-- 65

Query: 82  LSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
               D+  LGI  Q     + D      L  AI
Sbjct: 66  ---QDVKALGIAGQMHGATLLDAQ-QRVLRPAI 94

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A* Length = 554

 Score = 55.8 bits (135), Expect = 2e-10
 Identities = 20/85 (23%), Positives = 32/85 (37%), Gaps = 6/85 (7%)

Query: 26  RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 85
           R  +        V   S +I+   P+  + EQ    I QAV   +  A+ +     ++  
Sbjct: 18  RAGVFDL-QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQ---ADINPI 73

Query: 86  DIVTLGITNQRETTVVWDLNTGEPL 110
            +  LG      + VV D   G PL
Sbjct: 74  QVKGLGFDATC-SLVVLDKE-GNPL 96

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703} Length = 515

 Score = 48.5 bits (116), Expect = 8e-08
 Identities = 19/93 (20%), Positives = 31/93 (33%), Gaps = 17/93 (18%)

Query: 24  TS--RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG 81
           T   +V +  A T E V          +        DP     A Q   ++A        
Sbjct: 14  TQSCKVRVTDAETGELVRFGQ------AKHPNGTSVDPSYWWSAFQEAAEQAGGL----- 62

Query: 82  LSRDDIVTLGITNQRETTVVWDLNTGEPLYNAI 114
              DD+  L +  Q+   V+ D   G  + +A+
Sbjct: 63  ---DDVSALAVGGQQHGMVILDNQ-GNVIRDAM 91

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans} Length = 482

 Score = 42.5 bits (100), Expect = 8e-06
 Identities = 7/89 (7%), Positives = 20/89 (22%), Gaps = 13/89 (14%)

Query: 26  RVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD 85
           +V +        +       S     +G    D  +  + +   + R  +          
Sbjct: 19  KVSLWDL-DGRMLDRQVRP-SIPLEIDGIRRLDAPDTGRWLLDVLSRYADH--------- 67

Query: 86  DIVTLGITNQRETTVVWDLNTGEPLYNAI 114
            + T+                G   +  +
Sbjct: 68  PVTTIVPVGHGAGIAALT--DGRLAFPPL 94

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	129
3ezw_A	526	Glycerol kinase; glycerol metabolism, allosteric r	99.96
4e1j_A	520	Glycerol kinase; structural genomics, PSI-biology,	99.94
3g25_A	501	Glycerol kinase; IDP00743, ATP-binding, glycerol m	99.94
3h3n_X	506	Glycerol kinase; ATP-binding, glycerol metabolism,	99.94
2p3r_A	510	Glycerol kinase; glycerol metabolism, allosteric r	99.93
3hz6_A	511	Xylulokinase; xylulose, structural genomic, chromo	99.93
3ll3_A	504	Gluconate kinase; xylulose kinase, nysgx, ATP, ADP	99.93
3ifr_A	508	Carbohydrate kinase, FGGY; xylulose kinase, SGX, s	99.93
3l0q_A	554	Xylulose kinase; xlylulose kinase, SGX, PSI, struc	99.92
2zf5_O	497	Glycerol kinase; hyperthermophilic archaeon, ATP-b	99.92
2w40_A	503	Glycerol kinase, putative; closed conformation, ma	99.91
3jvp_A	572	Ribulokinase; PSI-II, NYSGXRC, ribulose kinase, su	99.91
2dpn_A	495	Glycerol kinase; thermus thermophilus HB8, structu	99.91
2d4w_A	504	Glycerol kinase; alpha and beta protein, ribonucle	99.91
3h6e_A	482	Carbohydrate kinase, FGGY; novosphingobium aromati	99.9
2itm_A	484	Xylulose kinase, xylulokinase; ATPase, FGGY kinase	99.89
4bc3_A	538	Xylulose kinase; transferase, glucuronate xyluloki	99.88
3i8b_A	515	Xylulose kinase; strain ATCC 15703 / DSM 20083, 11	99.87
2uyt_A	489	Rhamnulokinase; rhamnose degradation, IN-LINE phos	99.86
2qm1_A	326	Glucokinase; alpha-beta structure, putative helix-	99.41
1z05_A	429	Transcriptional regulator, ROK family; structural	99.27
3vgl_A	321	Glucokinase; ROK family, transferase; HET: BGC ANP	99.27
2hoe_A	380	N-acetylglucosamine kinase; TM1224, structural gen	99.25
1z6r_A	406	MLC protein; transcriptional repressor, ROK family	99.23
3r8e_A	321	Hypothetical sugar kinase; ribonuclease H-like mot	99.19
4db3_A	327	Glcnac kinase, N-acetyl-D-glucosamine kinase; stru	99.18
2yhw_A	343	Bifunctional UDP-N-acetylglucosamine 2-epimerase/N	99.16
3htv_A	310	D-allose kinase, allokinase; NP_418508.1, structur	99.06
2ch5_A	347	NAGK protein; transferase, N-acetylglucosamine, gl	99.05
1zc6_A	305	Probable N-acetylglucosamine kinase; NESG, Q7NU07_	99.05
3vov_A	302	Glucokinase, hexokinase; ROK, sugar kinase, transf	98.98
3epq_A	302	Putative fructokinase; SCRK, ADP binding, PSI2, MC	98.95
4htl_A	297	Beta-glucoside kinase; structural genomics, sugar	98.9
2ap1_A	327	Putative regulator protein; zinc binding protein,	98.89
2gup_A	292	ROK family protein; sugar kinase, streptococcus pn	98.78
2aa4_A	289	Mannac kinase, putative N-acetylmannosamine kinase	98.78
2e2o_A	299	Hexokinase; acetate and sugar kinases, HSP70, acti	98.77
1hux_A	270	Activator of (R)-2-hydroxyglutaryl-COA dehydratase	98.76
1woq_A	267	Inorganic polyphosphate/ATP-glucomannokinase; tran	98.76
3mcp_A	366	Glucokinase; structural genomics, joint center for	98.75
3lm2_A	226	Putative kinase; structural genomics, joint center	98.6
2q2r_A	373	Glucokinase 1, putative; ATPase hexose kinase fami	98.59
1sz2_A	332	Glucokinase, glucose kinase; ATP-dependent, glucos	98.59
2yhx_A	457	Hexokinase B; transferase(phosphoryl,alcohol accep	98.4
1bdg_A	451	Hexokinase; phosphotransferase; HET: GLC; 2.60A {S	98.37
1zbs_A	291	Hypothetical protein PG1100; alpha-beta protein.,	98.37
1saz_A	381	Probable butyrate kinase 2; askha (acetate and sug	98.35
4ehu_A	276	Activator of 2-hydroxyisocaproyl-COA dehydratase;	98.21
1zxo_A	291	Conserved hypothetical protein Q8A1P1; NESG, BTR25	98.17
3djc_A	266	Type III pantothenate kinase; structural genomics,	98.1
1cza_N	917	Hexokinase type I; structurally homologous domains	98.1
3o8m_A	485	Hexokinase; rnaseh-like fold, glycolysis, glucose	98.05
1cza_N	917	Hexokinase type I; structurally homologous domains	98.03
3zyy_X	631	Iron-sulfur cluster binding protein; iron-sulfur-b	97.65
3bex_A	249	Type III pantothenate kinase; actin-like fold, ATP	97.63
3h1q_A	272	Ethanolamine utilization protein EUTJ; ethanolamin	97.57
2h3g_X	268	Biosynthetic protein; pantothenate kinase, anthrax	97.46
4a2a_A	419	Cell division protein FTSA, putative; cell cycle,	97.21
3hm8_A	445	Hexokinase-3; glucose, glucose-6-phosphate, non-pr	97.07
3f9m_A	470	Glucokinase; hexokinase IV, ATP-binding, diabetes	97.02
2ivn_A	330	O-sialoglycoprotein endopeptidase; UP1 keops compl	96.67
2ych_A	377	Competence protein PILM; cell cycle, type IV pilus	96.42
3eno_A	334	Putative O-sialoglycoprotein endopeptidase; hydrol	95.88
3t69_A	330	Putative 2-dehydro-3-deoxygalactonokinase; structu	95.66
3cet_A	334	Conserved archaeal protein; Q6M145, MRR63, NESG, X	95.36
3r6m_A	213	YEAZ, resuscitation promoting factor; actin/HSP70	95.17
3nuw_A	295	2-OXO-3-deoxygalactonate kinase; structural genomi	95.02
1nbw_A	607	Glycerol dehydratase reactivase alpha subunit; mol	94.73
2f9w_A	271	Pantothenate kinase; COAA, transferase; HET: PAU;	94.69
2ews_A	287	Pantothenate kinase; PANK, structural genomics, st	94.45
2gel_A	231	Putative GRAM negative resuscitation promoting FA;	94.43
4gni_A	409	Putative heat shock protein; HSP70-type ATPase, AT	94.18
1u6z_A	513	Exopolyphosphatase; alpha/beta protein, askha (ace	93.94
2a6a_A	218	Hypothetical protein TM0874; glycoprotein endopept	93.57
3mdq_A	315	Exopolyphosphatase; structural genomics, joint cen	93.49
3en9_A	540	Glycoprotease, O-sialoglycoprotein endopeptidase/p	93.44
3sk3_A	415	Acetate kinase, acetokinase; actin-like ATPase dom	92.46
2d0o_A	610	DIOL dehydratase-reactivating factor large subunit	92.33
4ijn_A	398	Acetate kinase, acetokinase; proprionate kinase, A	92.02
3bzc_A	785	TEX; helix-turn-helix, helix-hairpin-helix, S1 dom	91.8
3cer_A	343	Possible exopolyphosphatase-like protein; NESG, BL	91.79
1yuw_A	554	Heat shock cognate 71 kDa protein; chaperone; 2.60	91.68
1t6c_A	315	Exopolyphosphatase; alpha/beta protein, actin-like	91.55
1vhx_A	150	Putative holliday junction resolvase; structural g	91.47
3qfu_A	394	78 kDa glucose-regulated protein homolog; HSP70, K	91.19
4ep4_A	166	Crossover junction endodeoxyribonuclease RUVC; res	90.44
1dkg_D	383	Molecular chaperone DNAK; HSP70, GRPE, nucleotide	90.08
3r9p_A	391	ACKA; ssgcid, seattle structural genomics center f	89.94
4b9q_A	605	Chaperone protein DNAK; HET: ATP; 2.40A {Escherich	89.43
3cqy_A	370	Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1	88.43
3i33_A	404	Heat shock-related 70 kDa protein 2; protein-ADP c	88.36
1hjr_A	158	Holliday junction resolvase (RUVC); site-specific	87.82
3cj1_A	456	Ectonucleoside triphosphate diphosphohydrolase 2;	86.84
2v7y_A	509	Chaperone protein DNAK; HSP70, heat shock protein,	86.66
1nu0_A	138	Hypothetical protein YQGF; structural genomics, st	86.21
3hi0_A	508	Putative exopolyphosphatase; 17739545, structural	86.21
2kho_A	605	Heat shock protein 70; molecular chaperone, HSP70,	86.02
3d2f_A	675	Heat shock protein homolog SSE1; nucleotide exchan	85.66
2e1z_A	415	Propionate kinase; TDCD, native, acetate kinase, n	84.75
1jce_A	344	ROD shape-determining protein MREB; MBL, actin, HS	84.74
3khy_A	384	Propionate kinase; csgid, IDP01739, ATP-binding, n	84.5
2zgy_A	320	Plasmid segregation protein PARM; plasmid partitio	84.39
1xho_A	148	Chorismate mutase; southeast collaboratory for str	84.34
1iv0_A	98	Hypothetical protein; rnaseh-like, YQGF, structura	83.94
4gib_A	250	Beta-phosphoglucomutase; rossmann fold, HAD-like,	83.67
3psf_A	1030	Transcription elongation factor SPT6; nucleus; 2.5	83.3
4h0p_A	438	Acetate kinase; askha (acetate and sugar kinas act	82.52
1dbf_A	127	Protein (chorismate mutase); shikimate pathway, is	81.62
1g99_A	408	Acetate kinase; alpha/beta, askha (acetate and sug	80.87
3aap_A	353	Ectonucleoside triphosphate diphosphohydrolase I;	80.67

>3ezw_A Glycerol kinase; glycerol metabolism, allosteric regulation, microfluidics, in SITU DATA collection, ATP-binding, kinase binding; 2.00A {Escherichia coli} PDB: 1gla_G 1bo5_O* 1bot_O 1glb_G* 1glc_G* 1gld_G* 1gle_G* 1glf_O* 1bu6_O 1bwf_Y* 1glj_Y* 1gll_Y*

Probab=99.96  E-value=8.4e-29  Score=197.28  Aligned_cols=113  Identities=33%  Similarity=0.539  Sum_probs=106.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++|+||||+|||++|++|||. +|++++..+.+++..+|.+||+||||++||+.+.+++++++++   +++++.+|.+||
T Consensus         3 kkYvlgID~GTss~Ka~l~d~-~G~~va~~~~~~~~~~p~~G~~Eqdp~~~w~~~~~~i~~~l~~---~~~~~~~I~aIg   78 (526)
T 3ezw_A            3 KKYIVALDQGTTSSRAVVMDH-DANIISVSQREFEQIYPKPGWVEHDPMEIWATQSSTLVEVLAK---ADISSDQIAAIG   78 (526)
T ss_dssp             CCEEEEEEECSSEEEEEEECT-TCCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEEE
T ss_pred             ceEEEEEEccccceeeeEEcC-CCCEEEEEEEecCcccCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhhEEEEE
Confidence            689999999999999999999 9999999999999999999999999999999999999999987   688889999999


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |++|++++++||+++|+|++|+|.|+|+|+..+|+++
T Consensus        79 is~q~~~~v~~D~~~G~pl~~ai~W~D~R~~~~~~~l  115 (526)
T 3ezw_A           79 ITNQRETTIVWEKETGKPIYNAIVWQCRRTAEICEHL  115 (526)
T ss_dssp             EEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             EeCCCCCEEEEECCCCeEcccceecCCcchHHHHHHH
Confidence            9999999999998679999999999999999888764

>4e1j_A Glycerol kinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc, transferase; 2.33A {Sinorhizobium meliloti}

Probab=99.94  E-value=1.1e-26  Score=185.02  Aligned_cols=121  Identities=33%  Similarity=0.466  Sum_probs=109.6

Q ss_pred             CCcCCCCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1582           4 NRPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS   83 (129)
Q Consensus         4 ~~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   83 (129)
                      |+-...||++|+||||+|||++|++++|. +|+++.+.+.+++..+|.+||+++||++||+.+.+++++++++   .+++
T Consensus        17 ~~~~~~MM~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~   92 (520)
T 4e1j_A           17 NLYFQSMMGGYILAIDQGTTSTRAIVFDG-NQKIAGVGQKEFKQHFPKSGWVEHDPEEIWQTVVSTVKEAIEK---SGIT   92 (520)
T ss_dssp             TCCCCCCCSCEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCC
T ss_pred             hHHHHHHhhCeEEEEEeCCcceEEEEECC-CCCEEEEEEEecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCC
Confidence            44556677789999999999999999999 9999999999999888999999999999999999999999876   5777


Q ss_pred             CCCeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          84 RDDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        84 ~~~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +.+|.+|||+++++++++||+++|+|++|++.|+|.|+..+|+++
T Consensus        93 ~~~I~~Igis~~g~~~v~~D~~~G~~l~~~i~W~D~R~~~~~~~l  137 (520)
T 4e1j_A           93 ANDIAAIGITNQRETVVVWDRETGKPIHNAIVWQDRRTAAFCDKL  137 (520)
T ss_dssp             GGGEEEEEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             cccEEEEEEeCCcceEEEEECCCCeECccccccccCCHHHHHHHH
Confidence            789999999999999999995459999999999999999887754

>3g25_A Glycerol kinase; IDP00743, ATP-binding, glycerol metabolism, nucleotide-binding, transferase, struct genomics; HET: MSE; 1.90A {Staphylococcus aureus subsp} PDB: 3ge1_A*

Probab=99.94  E-value=1.3e-26  Score=183.69  Aligned_cols=115  Identities=32%  Similarity=0.479  Sum_probs=106.5

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      +|++|+||||+|||++|++|+|. +|+++.+.+.+++...|.+||+++||++||+.+.+++++++++   .+.++.+|.+
T Consensus         3 aM~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~I~~   78 (501)
T 3g25_A            3 AMEKYILSIDQGTTSSRAILFNQ-KGEIAGVAQREFKQYFPQSGWVEHDANEIWTSVLAVMTEVINE---NDVRADQIAG   78 (501)
T ss_dssp             CCCCEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---TTCCGGGEEE
T ss_pred             ccccEEEEEEeCccceEEEEEcC-CCCEEEEEEeecccccCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEE
Confidence            35679999999999999999999 9999999999999888999999999999999999999999876   5777789999


Q ss_pred             EEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |||+++++++++||+++|+|++|++.|+|.|+..+|+++
T Consensus        79 Igis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l  117 (501)
T 3g25_A           79 IGITNQRETTVVWDKHTGRPIYHAIVWQSRQTQSICSEL  117 (501)
T ss_dssp             EEEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             EEEECCcCcEEEEECCCCeECCCceeeccCChHHHHHHH
Confidence            999999999999999779999999999999999888764

>3h3n_X Glycerol kinase; ATP-binding, glycerol metabolism, nucleoti binding, phosphoprotein, transferase; 1.73A {Enterococcus casseliflavus} PDB: 3h3o_O 3flc_O 3h46_X 3h45_X 3d7e_O 1r59_O 1xup_O

Probab=99.94  E-value=1.5e-26  Score=183.66  Aligned_cols=114  Identities=31%  Similarity=0.475  Sum_probs=105.9

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +++|+||||+|||++|++|+|. +|+++.+.+.+++..+|.+||+++||++||+.+.+++++++++   ++.++.+|.+|
T Consensus         3 ~~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~~~~~~I~~I   78 (506)
T 3h3n_X            3 EKNYVMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGI   78 (506)
T ss_dssp             CCCEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEE
T ss_pred             CCCEEEEEEcCCCceEEEEECC-CCCEEEEEEEecCccCCCCCcEEECHHHHHHHHHHHHHHHHHH---cCCChhheEEE
Confidence            3579999999999999999999 9999999999999888999999999999999999999999876   57777899999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||++|++++++||+++|+|++|++.|+|.|+..+|+++
T Consensus        79 gis~~~~~~v~~D~~~G~~l~~~i~w~D~R~~~~~~~l  116 (506)
T 3h3n_X           79 GITNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQL  116 (506)
T ss_dssp             EEEECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             EeeCCcccEEEEeCCCCeECCCceEecCcchHHHHHHH
Confidence            99999999999999779999999999999999888764

>3hz6_A Xylulokinase; xylulose, structural genomic, chromob violaceum, manolate, transferase, structural genomi 2; HET: ADP XUL; 1.65A {Chromobacterium violaceum} PDB: 3kzb_A*

Probab=99.93  E-value=1.9e-26  Score=183.19  Aligned_cols=112  Identities=14%  Similarity=0.099  Sum_probs=104.4

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      |++|+||||+|||++|++++|. +|+++.+.+.+++...|.+||+++||++||+.+.+++++++ +   .+.++.+|.+|
T Consensus         3 mm~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~-~---~~~~~~~I~~I   77 (511)
T 3hz6_A            3 LAFYIATFDIGTTEVKAALADR-DGGLHFQRSIALETYGDGNGPVEQDAGDWYDAVQRIASSWW-Q---SGVDARRVSAI   77 (511)
T ss_dssp             CCCEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBSTTSSCCEECHHHHHHHHHHHHHHHH-T---TTCCGGGEEEE
T ss_pred             cccEEEEEEeCCCceEEEEECC-CCCEEEEEEeecceecCCCCCEEECHHHHHHHHHHHHHHHH-h---cCCChhHeEEE
Confidence            3579999999999999999999 99999999999998899999999999999999999999988 5   57777899999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||++|++++++||++ |+|++|++.|+|.|+..+|+++
T Consensus        78 gis~q~~~~v~~D~~-G~pl~~~i~W~D~R~~~~~~~l  114 (511)
T 3hz6_A           78 VLSGQMQNFLPLDQD-HEPLHRAVLYSDKRPLKEAEEI  114 (511)
T ss_dssp             EEEECCSCBEEECTT-SCBSSCEECTTCCCCHHHHHHH
T ss_pred             EEecccccEEEECCC-cCCCcCceecCCCCHHHHHHHH
Confidence            999999999999997 9999999999999999888764

>3ll3_A Gluconate kinase; xylulose kinase, nysgx, ATP, ADP, xylulose, transferase, structural genomics, PSI-2, protein structure initiative; HET: ATP DXP XUL ADP; 2.00A {Lactobacillus acidophilus} PDB: 3gbt_A*

Probab=99.93  E-value=2.4e-26  Score=182.40  Aligned_cols=111  Identities=18%  Similarity=0.137  Sum_probs=101.8

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      |+++|+||||+|||++|++++|. +|+++.+.+.+++...|.+||+++||++||+.+.+++++++++   .+   .+|.+
T Consensus         1 M~m~~~lgIDiGtts~K~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~~~~~i~~~~~~---~~---~~I~~   73 (504)
T 3ll3_A            1 MSLKYIIGMDVGTTATKGVLYDI-NGKAVASVSKGYPLIQTKVGQAEEDPKLIFDAVQEIIFDLTQK---ID---GKIAA   73 (504)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHT---CS---SEEEE
T ss_pred             CCCCEEEEEEecCCceEEEEEcC-CCCEEEEEEeecceecCCCCcEEECHHHHHHHHHHHHHHHHHh---CC---CCeEE
Confidence            34579999999999999999999 9999999999999889999999999999999999999999875   22   68999


Q ss_pred             EEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |||++|++++++||++ |+|++|+|.|+|.|+..+|+++
T Consensus        74 Igis~q~~~~v~~D~~-G~pl~~~i~W~D~R~~~~~~~l  111 (504)
T 3ll3_A           74 ISWSSQMHSLIGLGSD-DELLTNSITWADNCAKSIVQDA  111 (504)
T ss_dssp             EEEEECSSCBEEECTT-SCBSSCEECTTCCTTHHHHHHH
T ss_pred             EEEECCCCcEEEECCC-CCCcccceeCCccCHHHHHHHH
Confidence            9999999999999997 9999999999999999888764

>3ifr_A Carbohydrate kinase, FGGY; xylulose kinase, SGX, structural GENO 11200H, transferase, PSI-2; 2.30A {Rhodospirillum rubrum}

Probab=99.93  E-value=2.5e-26  Score=182.43  Aligned_cols=113  Identities=18%  Similarity=0.175  Sum_probs=104.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      .++|+||||+|||++|++|+|. +|+++.+.+.+++...|.+||+++||++||+.+.+++++++++   ++.++.+|.+|
T Consensus         5 ~~~~~lgIDiGtts~k~~l~d~-~G~il~~~~~~~~~~~p~~g~~e~dp~~~~~~i~~~i~~~~~~---~~~~~~~I~~I   80 (508)
T 3ifr_A            5 QGRQVIGLDIGTTSTIAILVRL-PDTVVAVASRPTTLSSPHPGWAEEDPAQWWDNARAVLAELKTT---AGESDWRPGGI   80 (508)
T ss_dssp             --CEEEEEEECSSEEEEEEEET-TTEEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---HCGGGCCEEEE
T ss_pred             cCCEEEEEEecCcceEEEEECC-CCCEEEEEEEecceecCCCCceEECHHHHHHHHHHHHHHHHHh---cCCChhheEEE
Confidence            3579999999999999999998 9999999999999889999999999999999999999999876   46677899999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||++|++++++||++ |+|++|++.|+|.|+..+|+++
T Consensus        81 gis~~~~~~v~~D~~-G~~l~~~i~W~D~R~~~~~~~l  117 (508)
T 3ifr_A           81 CVTGMLPAVVLLDDR-GAVLRPSIQQSDGRCGDEVAEL  117 (508)
T ss_dssp             EEEECSSCBEEECTT-SCBCSCEECTTCCCCHHHHHHH
T ss_pred             EEECCCCcEEEECCC-CCCcccceeccccChHHHHHHH
Confidence            999999999999997 9999999999999999888765

>3l0q_A Xylulose kinase; xlylulose kinase, SGX, PSI, structural genomics, protein structure initiative; HET: MSE XUL EPE; 1.61A {Yersinia pseudotuberculosis} PDB: 3gg4_A*

Probab=99.92  E-value=1.3e-25  Score=179.79  Aligned_cols=112  Identities=21%  Similarity=0.206  Sum_probs=103.1

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      .++|+||||+|||++|++|+|. +|+++.+.+.+++...|.+||+++||++||+.+.+++++++++   .++.+.+|.+|
T Consensus         3 ~~~~~lgIDiGtts~ka~l~d~-~G~il~~~~~~~~~~~p~~g~~eqdp~~~~~~~~~~i~~~~~~---~~~~~~~I~~I   78 (554)
T 3l0q_A            3 LASYFIGVDVGTGSARAGVFDL-QGRMVGQASREITMFKPKADFVEQSSENIWQAVCNAVRDAVNQ---ADINPIQVKGL   78 (554)
T ss_dssp             -CCEEEEEEECSSEEEEEEEET-TSCEEEEEEEECCCEEEETTEEEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEE
T ss_pred             CCcEEEEEEECcccEEEEEECC-CCCEEEEEEEecccccCCCCccccCHHHHHHHHHHHHHHHHHH---cCCCHhHEEEE
Confidence            3579999999999999999998 9999999999998888999999999999999999999999876   57777899999


Q ss_pred             EEecCcceEEEEeCCCCccc---------ccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPL---------YNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~---------~~~i~w~d~r~~~~~~~~  128 (129)
                      ||+++ +++++||++ |+|+         +|+|.|+|.|+..+|+++
T Consensus        79 gis~~-~~~v~~D~~-G~pl~~~~~~~~~~~ai~W~D~Ra~~~~~~l  123 (554)
T 3l0q_A           79 GFDAT-CSLVVLDKE-GNPLTVSPSGRNEQNVIVWMDHRAITQAERI  123 (554)
T ss_dssp             EEEEC-SCEEEEETT-SCBCCCSTTCCTTCCEECTTCCTTHHHHHHH
T ss_pred             EEcCC-CceEEECCC-CCEeeccCCCCCCCCcEEecccchHHHHHHH
Confidence            99998 799999998 9999         799999999999888765

>2zf5_O Glycerol kinase; hyperthermophilic archaeon, ATP-binding, GL metabolism, nucleotide-binding, transferase; 2.40A {Thermococcus kodakarensis}

Probab=99.92  E-value=3.7e-25  Score=175.15  Aligned_cols=112  Identities=29%  Similarity=0.463  Sum_probs=103.5

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ++|+||||+|||++|++++|. +|+++.+.+.+++...|.+||.++||++||+.+.+++++++++   .++++.+|.+||
T Consensus         2 ~~~~lgiDiGtt~~k~~l~d~-~g~~~~~~~~~~~~~~p~~g~~e~d~~~~~~~~~~~i~~~~~~---~~~~~~~i~~Ig   77 (497)
T 2zf5_O            2 EKFVLSLDEGTTSARAIIFDR-ESNIHGIGQYEFPQHYPRPGWVEHNPEEIWDAQLRAIKDAIQS---ARIEPNQIAAIG   77 (497)
T ss_dssp             CCEEEEEEECSSEEEEEEECT-TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHH---HTCCGGGEEEEE
T ss_pred             CcEEEEEecCCchhEEEEECC-CCCEEEEEEeccceecCCCCcEEECHHHHHHHHHHHHHHHHHh---cCCCcccEEEEE
Confidence            468999999999999999999 9999999999999888999999999999999999999999876   466677899999


Q ss_pred             EecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |+++++++++||++ |+|++|++.|+|.|+..+|+++
T Consensus        78 is~~~~~~v~~D~~-G~~l~~~i~w~D~R~~~~~~~l  113 (497)
T 2zf5_O           78 VTNQRETTLVWDKD-GKPLYNAIVWQCRRTAEMVEEI  113 (497)
T ss_dssp             EEECSSCEEEECTT-CCBSSCEECTTCCTTHHHHHHH
T ss_pred             EecCCCcEEEECCC-CCCcccceeecccCcHHHHHHH
Confidence            99999999999995 9999999999999998888654

>2w40_A Glycerol kinase, putative; closed conformation, malaria, transferase, sugar kinase/HSP70/actin superfamily, open conformation; 1.49A {Plasmodium falciparum} PDB: 2w41_A*

Probab=99.91  E-value=7.9e-25  Score=173.47  Aligned_cols=112  Identities=29%  Similarity=0.443  Sum_probs=102.7

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhC--CCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH--GLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~--~~~~~~I~~I   90 (129)
                      +|+||||+|||++|++++|. +|+++.+.+.+++...|.+||.++||++||+.+.+++++++++   .  ++++.+|.+|
T Consensus         4 ~~~lgIDiGtT~~k~~l~d~-~g~i~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~~~i~~I   79 (503)
T 2w40_A            4 NVILSIDQSTQSTKVFFYDE-ELNIVHSNNLNHEQKCLKPGWYEHDPIEIMTNLYNLMNEGIKV---LKDKYTSVIIKCI   79 (503)
T ss_dssp             EEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCCBCCSTTCCEECHHHHHHHHHHHHHHHHHH---HHHHSSSCEEEEE
T ss_pred             cEEEEEEeCCcceEEEEECC-CCCEEEEEEEeeeeecCCCCcEEECHHHHHHHHHHHHHHHHHH---hhcCCCccceEEE
Confidence            58999999999999999999 9999999999999888999999999999999999999998875   3  4456789999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||+++++++++||+++|++++|++.|.|.|+..+|+++
T Consensus        80 gis~~~~~~~~~D~~~G~~l~~~i~w~D~r~~~~~~~l  117 (503)
T 2w40_A           80 GITNQRETVIIWDRITGKPLYNAIVWLDTRVEELVTEF  117 (503)
T ss_dssp             EEEECSSCEEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             EEcCCcceEEEEECCCCcCCccceeecccCcHHHHHHH
Confidence            99999999999999889999999999999998887654

>2dpn_A Glycerol kinase; thermus thermophilus HB8, structural genomics, NPPSFA, national project on protein structural and functional analyses; 2.80A {Thermus thermophilus}

Probab=99.91  E-value=9.2e-25  Score=172.82  Aligned_cols=112  Identities=29%  Similarity=0.476  Sum_probs=103.1

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|||++|++++|. +|+++.+.+.+++...|.+||.++||++||+.+.+++++++++   .++++.+|.+|||
T Consensus         2 ~~~lgiDiGtT~~k~~l~d~-~g~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igi   77 (495)
T 2dpn_A            2 AFLLALDQGTTSSRAILFTL-EGRPVAVAKREFRQLYPKPGWVEHDPLEIWETTLWAAREVLRR---AGAEAGEVLALGI   77 (495)
T ss_dssp             -CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCEECSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGCCEEEE
T ss_pred             cEEEEEeeCCcceEEEEECC-CCCEEEEEEEeeceecCCCCcEeeCHHHHHHHHHHHHHHHHHh---cCCCcccEEEEEE
Confidence            47899999999999999999 9999999999998888999999999999999999999999876   5666778999999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +++++++++||+++|++++|++.|+|.|+..+|+++
T Consensus        78 s~~~~~~~~vD~~~G~~l~~~i~w~D~R~~~~~~~l  113 (495)
T 2dpn_A           78 TNQRETTLLWDRKTGKPLHNAIVWQDRRTTPLCEAL  113 (495)
T ss_dssp             EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             eCCCccEEEEECCCCcCCccceeecccChHHHHHHH
Confidence            999999999999779999999999999998887654

>2d4w_A Glycerol kinase; alpha and beta protein, ribonuclease H-like motif, actin- like ATPase domain, transferase; 2.30A {Cellulomonas SP}

Probab=99.91  E-value=1.9e-24  Score=171.36  Aligned_cols=112  Identities=30%  Similarity=0.501  Sum_probs=103.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      .|+||||+|||++|++++|. +|+++.+.+.+++...|.+||.++||++||+.+.+++++++++   .++++.+|.+|||
T Consensus         2 ~~~lgiDiGtts~k~~l~d~-~G~i~~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~~~~~~~i~~Igi   77 (504)
T 2d4w_A            2 DYVLAIDQGTTSSRAIVFDH-SGEIYSTGQLEHDQIFPRAGWVEHNPEQIWNNVREVVGLALTR---GNLTHEDIAAVGI   77 (504)
T ss_dssp             CEEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEEE
T ss_pred             CEEEEEecCCcceEEEEECC-CCCEEEEEEEecceecCCCCceeECHHHHHHHHHHHHHHHHHH---cCCCcccEEEEEE
Confidence            48999999999999999999 9999999999999888999999999999999999999999876   5666778999999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +++++++++||+++|++++|++.|+|.|+..+|+++
T Consensus        78 s~~g~~~v~vD~~~G~~l~~~i~w~D~R~~~~~~~l  113 (504)
T 2d4w_A           78 TNQRETAVVWDKTTGKPVYNAIVWQDTRTQKIVDEL  113 (504)
T ss_dssp             EECSSCBEEEETTTCCBSSCEECTTCCTTHHHHHHH
T ss_pred             eCCCCeEEEEECCCCCCccccceecccChHHHHHHH
Confidence            999999999998779999999999999998877654

>3h6e_A Carbohydrate kinase, FGGY; novosphingobium aromaticivorans,strain 12444, SGX, transferase; 2.50A {Novosphingobium aromaticivorans}

Probab=99.90  E-value=1.3e-24  Score=171.82  Aligned_cols=105  Identities=9%  Similarity=0.042  Sum_probs=92.6

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      |++|+||||+|||++|++++|. +|+++.+.+++++. .|.+||+|+||++||+.+.+++++++ +        .+|.+|
T Consensus         4 mm~~~lgIDiGTts~Ka~l~d~-~G~i~~~~~~~~~~-~~~~g~~eqdp~~~~~~~~~~i~~~~-~--------~~I~aI   72 (482)
T 3h6e_A            4 STGATIVIDLGKTLSKVSLWDL-DGRMLDRQVRPSIP-LEIDGIRRLDAPDTGRWLLDVLSRYA-D--------HPVTTI   72 (482)
T ss_dssp             ----CEEEEECSSEEEEEEECT-TSCEEEEEEEECCC-EESSSCEECCHHHHHHHHHHHHHHTT-T--------SCCCEE
T ss_pred             hhceEEEEEcCCCCeEEEEEEC-CCcEEEEEEecCCc-ccCCCceeECHHHHHHHHHHHHHHHH-h--------cCCCEE
Confidence            4568999999999999999998 99999999999985 57899999999999999998887765 3        679999


Q ss_pred             EEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ||+++++++++|| + |+|++|+|.|+|+|+..+|+++
T Consensus        73 gis~~~~~~v~~D-~-G~pl~~ai~w~D~R~~~~~~~l  108 (482)
T 3h6e_A           73 VPVGHGAGIAALT-D-GRLAFPPLDYEQSIPEAVMADY  108 (482)
T ss_dssp             EEEECSSCEEEEE-T-TEECSCCBCTTSCCCHHHHHHH
T ss_pred             EEecCcCCEEEEC-C-CCEeccccccCCcccHHHHHHH
Confidence            9999999999999 7 9999999999999998877654

>2itm_A Xylulose kinase, xylulokinase; ATPase, FGGY kinase, transferase; HET: XUL; 2.10A {Escherichia coli} PDB: 2nlx_A

Probab=99.89  E-value=2.2e-23  Score=164.47  Aligned_cols=108  Identities=21%  Similarity=0.263  Sum_probs=99.2

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|||++|++++|. +|+++...+.+++...|.+||+++||++||+.+.+++++++++   .  .+.+|.+|||+
T Consensus         1 ~~lgiDiGtt~~k~~l~d~-~g~~l~~~~~~~~~~~p~~g~~e~d~~~~~~~i~~~i~~~~~~---~--~~~~i~~Igis   74 (484)
T 2itm_A            1 MYIGIDLGTSGVKVILLNE-QGEVVAAQTEKLTVSRPHPLWSEQDPEQWWQATDRAMKALGDQ---H--SLQDVKALGIA   74 (484)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEEEECCCBCSSTTCCEECHHHHHHHHHHHHHHHHHH---S--CCTTCCEEEEE
T ss_pred             CEEEEEecCcccEEEEECC-CCCEEEEEEeccccccCCCCCEeECHHHHHHHHHHHHHHHHHh---C--CccceEEEEEc
Confidence            4799999999999999999 9999999999999889999999999999999999999998875   2  24689999999


Q ss_pred             cCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      ++++++++||++ |++++|++.|.|.|+..+|+++
T Consensus        75 ~~~~~~v~~D~~-G~~l~~~i~w~D~R~~~~~~~l  108 (484)
T 2itm_A           75 GQMHGATLLDAQ-QRVLRPAILWNDGRCAQECTLL  108 (484)
T ss_dssp             ECSSCBEEECTT-CCBCSCEECTTCCTTHHHHHHH
T ss_pred             CCcCcEEEECCC-cCCCcccceecccCcHHHHHHH
Confidence            999999999997 9999999999999998887654

>4bc3_A Xylulose kinase; transferase, glucuronate xylulokinase pathway; HET: MSE EDO; 1.68A {Homo sapiens} PDB: 4bc2_A* 4bc4_A* 4bc5_A*

Probab=99.88  E-value=3.3e-23  Score=165.45  Aligned_cols=112  Identities=12%  Similarity=0.208  Sum_probs=93.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCC----CCeE-------EECHH-HHHHHHHHHHHHHHHHHH
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQ----EGWA-------EQDPM-EILQAVQTTMDRAIEKLS   78 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~----~g~~-------~~~~~-~~~~~i~~~~~~~~~~~~   78 (129)
                      .++|+||||+|||++|++|||. +|+++++.+.+++..+|.    +||+       ||||+ .||+.+..+.+. +.+  
T Consensus         8 ~~~~~lgID~GTts~Ka~l~d~-~G~vv~~~~~~~~~~~p~~~~~~g~~e~~~g~~eqdp~~~w~~~~~~~~~~-l~~--   83 (538)
T 4bc3_A            8 PRRCCLGWDFSTQQVKVVAVDA-ELNVFYEESVHFDRDLPEFGTQGGVHVHKDGLTVTSPVLMWVQALDIILEK-MKA--   83 (538)
T ss_dssp             -CCEEEEEEECSSEEEEEEEET-TCCEEEEEEEEHHHHSGGGCCBTTBEECTTSSCEEEEHHHHHHHHHHHHHH-HHH--
T ss_pred             CCCEEEEEEEcCcCEEEEEECC-CCCEEEEEEEecCCcCCcccCCCCeeecCCCccccCcHHHHHHHHHHHHHH-HHH--
Confidence            3579999999999999999998 999999999999876664    6775       57787 466666555544 444  


Q ss_pred             hCCCCCCCeeEEEEecCcceEEEEeCCCCc--------------------ccccceeecCCCcccccCCC
Q psy1582          79 AHGLSRDDIVTLGITNQRETTVVWDLNTGE--------------------PLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        79 ~~~~~~~~I~~Igis~~~~g~v~~d~~~g~--------------------~~~~~i~w~d~r~~~~~~~~  128 (129)
                       +++++.+|.+|||++|++++++||++ |.                    |++|+|.|+|.|+..+|+++
T Consensus        84 -~~~~~~~I~aIgis~q~~~~v~~D~~-g~~~l~~l~~~~~l~~~~~~~~pl~~ai~W~D~R~~~~~~~l  151 (538)
T 4bc3_A           84 -SGFDFSQVLALSGAGQQHGSIYWKAG-AQQALTSLSPDLRLHQQLQDCFSISDCPVWMDSSTTAQCRQL  151 (538)
T ss_dssp             -TTCCGGGEEEEEEEECSSCEEEEETT-HHHHHHTCCTTSCHHHHHTTCBSCSEEECTTCCCCHHHHHHH
T ss_pred             -cCCChHHeEEEEecccceeEEEECCC-ccccccccccccchhhhccccccccCCcccccCcHHHHHHHH
Confidence             67778899999999999999999997 54                    89999999999999888764

>3i8b_A Xylulose kinase; strain ATCC 15703 / DSM 20083, 11200J,, transferase, structural genomics, PSI-2; 2.00A {Bifidobacterium adolescentis ATCC15703}

Probab=99.87  E-value=8.9e-23  Score=162.37  Aligned_cols=102  Identities=17%  Similarity=0.154  Sum_probs=90.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEe-CCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIIS-ALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d-~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      .++|+||||+|||++|++|+| . +|+++.+.+.++      +|++++||++||+.+.+++++       ++. ..+|.+
T Consensus         3 ~~~~~lgIDiGtts~ka~l~d~~-~G~i~~~~~~~~------~g~~e~d~~~~~~~i~~~l~~-------~~~-~~~I~~   67 (515)
T 3i8b_A            3 LRTLVAGVDTSTQSCKVRVTDAE-TGELVRFGQAKH------PNGTSVDPSYWWSAFQEAAEQ-------AGG-LDDVSA   67 (515)
T ss_dssp             CSCEEEEEEECSSEEEEEEEETT-TCCEEEEEEEEC------CSSSEECTHHHHHHHHHHHHH-------TTC-STTEEE
T ss_pred             CCcEEEEEEeccccEEEEEEECC-CCeEEEEEEEeC------CCCceECHHHHHHHHHHHHHh-------cCC-ccCceE
Confidence            467999999999999999999 7 999999988876      478999999999998877654       233 578999


Q ss_pred             EEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      |||++|++++++||++ |+|++|+|.|+|.|+..+|+++
T Consensus        68 Igis~q~~~~v~~D~~-G~pl~~~i~W~D~R~~~~~~~l  105 (515)
T 3i8b_A           68 LAVGGQQHGMVILDNQ-GNVIRDAMLWNDTSSAPQAAAL  105 (515)
T ss_dssp             EEEEECSSCBEEECTT-SCBCSCEECTTCCTTHHHHHHH
T ss_pred             EEEeCCcceEEEECCC-CCCcCCcceecCCCHHHHHHHH
Confidence            9999999999999996 9999999999999998887654

>2uyt_A Rhamnulokinase; rhamnose degradation, IN-LINE phosphoryl transfer, hexokinas actin superfamily, L-rhamnulose kinase, rhamnose metabolism kinase; HET: LRH ADP; 1.55A {Escherichia coli} PDB: 2cgk_A 2cgj_A* 2cgl_A*

Probab=99.86  E-value=1.5e-22  Score=159.67  Aligned_cols=110  Identities=13%  Similarity=0.083  Sum_probs=93.8

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeec----cccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDIS----TISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD   85 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~----~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (129)
                      |.++++||||+|||++|++|+|. +|+++...+.++.    ...|.+|+.+++|++||+.+.++++++...       ..
T Consensus         1 m~~~~~lgiDiGtts~k~~l~d~-~g~~~~~~~~~~~~~~~~~~~~~g~~e~d~~~~~~~i~~~~~~~~~~-------~~   72 (489)
T 2uyt_A            1 MTFRNCVAVDLGASSGRVMLARY-ERECRSLTLREIHRFNNGLHSQNGYVTWDVDSLESAIRLGLNKVCAA-------GI   72 (489)
T ss_dssp             -CCEEEEEEEECSSEEEEEEEEE-EGGGTEEEEEEEEEEECCCEEETTEEECCHHHHHHHHHHHHHHHHHT-------TC
T ss_pred             CCcceEEEEEecCCCceEEEEEe-cCccceEEEEEEeecCCCccccCCeEEECHHHHHHHHHHHHHHHHhC-------CC
Confidence            45668999999999999999998 8998877666543    234668999999999999999998887542       35


Q ss_pred             CeeEEEEecCcceEEEEeCCCCcccccceeecCCCcccccCCC
Q psy1582          86 DIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGRF  128 (129)
Q Consensus        86 ~I~~Igis~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~~  128 (129)
                      +|.+|||++|++++++||++ |+|++|++.|+|.|+..+|+++
T Consensus        73 ~i~~Igis~q~~~~v~~D~~-G~~l~~~i~w~D~R~~~~~~~l  114 (489)
T 2uyt_A           73 AIDSIGIDTWGVDFVLLDQQ-GQRVGLPVAYRDSRTNGLMAQA  114 (489)
T ss_dssp             CCCEEEEEECSSCEEEECTT-SCEESCCBCTTCGGGTTHHHHH
T ss_pred             CceEEEEecCcccEEEECCC-CCCccCCccccCCccHHHHHHH
Confidence            79999999999999999998 9999999999999999888754

>2qm1_A Glucokinase; alpha-beta structure, putative helix-turn-helix, structural PSI-2, protein structure initiative; HET: MSE; 2.02A {Enterococcus faecalis}

Probab=99.41  E-value=9.3e-13  Score=98.35  Aligned_cols=95  Identities=13%  Similarity=0.151  Sum_probs=76.2

Q ss_pred             CCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582           9 VAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus         9 ~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      ++|+.|+||||+|+|++|++++|. +|+++.+.+.+++.        ..+++++++.+.+.+++++++   .+.+..+|.
T Consensus         2 ~~m~~~~lgiDiggt~~~~~l~d~-~g~il~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~   69 (326)
T 2qm1_A            2 NAMDKKIIGIDLGGTTIKFAILTT-DGVVQQKWSIETNI--------LEDGKHIVPSIIESIRHRIDL---YNMKKEDFV   69 (326)
T ss_dssp             CGGGCEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCC--------TTTTTTHHHHHHHHHHHHHHH---TTCCGGGEE
T ss_pred             CCcccEEEEEEECCCEEEEEEECC-CCCEEEEEEEcCCC--------CCCHHHHHHHHHHHHHHHHHH---cCCCcccee
Confidence            345679999999999999999999 99999888777642        136778899999999998876   566667899


Q ss_pred             EEEEecCcceEEEEeCCCCccc-ccceeecCC
Q psy1582          89 TLGITNQRETTVVWDLNTGEPL-YNAIEQGLR  119 (129)
Q Consensus        89 ~Igis~~~~g~v~~d~~~g~~~-~~~i~w~d~  119 (129)
                      +|||+.++    ++|.++|.+. .|.+.|.+.
T Consensus        70 ~igi~~pG----~vd~~~g~v~~~~~l~w~~~   97 (326)
T 2qm1_A           70 GIGMGTPG----SVDIEKGTVVGAYNLNWTTV   97 (326)
T ss_dssp             EEEEEESS----EEETTTTEEECBGGGTBCSC
T ss_pred             EEEEeccc----ceeCCCCEEEecCCCCccCC
Confidence            99999987    6787667765 355678765

>1z05_A Transcriptional regulator, ROK family; structural genomics, protein structure initiative, midwest center for structural genomics; 2.00A {Vibrio cholerae o1 biovar eltor} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=99.27  E-value=3.5e-11  Score=93.45  Aligned_cols=93  Identities=12%  Similarity=0.062  Sum_probs=76.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      ...|+||||+|+|++|++++|. +|+++.+.+.+++         ..+++++++.+.+.+++++++   .+.+..+|.+|
T Consensus       106 ~~~~~lGIDiGgt~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gi  172 (429)
T 1z05_A          106 LGWQFLSMRLGRGYLTIALHEL-GGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSI  172 (429)
T ss_dssp             TTEEEEEEEEETTEEEEEEEET-TSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEE
T ss_pred             CCCEEEEEEECCCEEEEEEECC-CCCEEEEEEEcCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceEEE
Confidence            3568999999999999999999 9999988777663         136899999999999998876   56666789999


Q ss_pred             EEecCcceEEEEeCCCCccc-ccceeecCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPL-YNAIEQGLRI  120 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~-~~~i~w~d~r  120 (129)
                      ||+.++    ++|.++|.+. .|.+.|.+..
T Consensus       173 gi~~pG----~vd~~~g~v~~~~~l~w~~~~  199 (429)
T 1z05_A          173 AITLPG----LVNSEQGIVLQMPHYNVKNLA  199 (429)
T ss_dssp             EEEESS----EEETTTTEEEECSSSBCSSBC
T ss_pred             EEeccC----cEeCCCCeEeecCCCCCCCCC
Confidence            999887    6787668776 3566798744

>3vgl_A Glucokinase; ROK family, transferase; HET: BGC ANP; 1.55A {Streptomyces griseus} PDB: 3vgk_A* 3vgm_A*

Probab=99.27  E-value=4.3e-12  Score=95.13  Aligned_cols=85  Identities=12%  Similarity=0.098  Sum_probs=68.8

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|+|++|++++|. +|+++.+.+.+++          .+++.+++.+.+.++++.++        .+|.+|||
T Consensus         2 ~~~lgiDiGgt~i~~~l~d~-~G~i~~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~--------~~i~gigi   62 (321)
T 3vgl_A            2 GLTIGVDIGGTKIAAGVVDE-EGRILSTFKVATP----------PTAEGIVDAICAAVAGASEG--------HDVEAVGI   62 (321)
T ss_dssp             CEEEEEEECSSEEEEEEECT-TCCBCCCEEEECC----------SSHHHHHHHHHHHHHHHHTT--------CCEEEEEE
T ss_pred             cEEEEEEECCCEEEEEEECC-CCCEEEEEEeeCC----------CCHHHHHHHHHHHHHHHHhh--------cCceEEEE
Confidence            58999999999999999999 9999987777652          46889999999888887642        47999999


Q ss_pred             ecCcceEEEEeCCCCcccc-cceeecCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLY-NAIEQGLRI  120 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~-~~i~w~d~r  120 (129)
                      +.++    ++|.++|.+.. |.+.|.+.+
T Consensus        63 ~~pG----~vd~~~g~v~~~~~l~w~~~~   87 (321)
T 3vgl_A           63 GAAG----YVDDKRATVLFAPNIDWRHEP   87 (321)
T ss_dssp             EESS----EECTTSSCEEECSSSCCEEEC
T ss_pred             eccc----cEeCCCCEEEeCCCCCCcCCC
Confidence            9887    77877677654 556787754

>2hoe_A N-acetylglucosamine kinase; TM1224, structural genomics, PSI-2, protein structure initiative, joint center structural genomics, JCSG; 2.46A {Thermotoga maritima} SCOP: a.4.5.63 c.55.1.10 c.55.1.10

Probab=99.25  E-value=6.4e-12  Score=96.22  Aligned_cols=93  Identities=13%  Similarity=0.095  Sum_probs=74.3

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ..|+||||+|+|++|++++|. +|+++.+.+.+++.        +.+++++++.+.+.+++++++   .+.+..+|.+||
T Consensus        86 ~~~~lGIDiGgt~i~~~l~d~-~G~vl~~~~~~~~~--------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gig  153 (380)
T 2hoe_A           86 CAYVLGIEVTRDEIAACLIDA-SMNILAHEAHPLPS--------QSDREETLNVMYRIIDRAKDM---MEKLGSKLSALT  153 (380)
T ss_dssp             GCEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHHH---HHHTTCCCCEEE
T ss_pred             CCeEEEEEECCCEEEEEEECC-CCCEEEEEEEccCC--------CCCHHHHHHHHHHHHHHHHHh---cCCCcCcEEEEE
Confidence            468999999999999999999 99999888776642        247899999999999998876   344457899999


Q ss_pred             EecCcceEEEEeCCCCcccc-cceeecCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLY-NAIEQGLRI  120 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~-~~i~w~d~r  120 (129)
                      |+.++    ++|.++|.+.. |.+.|.+..
T Consensus       154 i~~pG----~vd~~~g~v~~~~~l~w~~~~  179 (380)
T 2hoe_A          154 VAAPG----PIDTERGIIIDPRNFPLSQIP  179 (380)
T ss_dssp             EEESS----CEETTTTEECCCSSCTTBTSC
T ss_pred             EEeec----cEECCCCEEeccCCCCCcCCC
Confidence            99887    67876687663 556788744

>1z6r_A MLC protein; transcriptional repressor, ROK family protein, DNA binding P helix-turn-helix, phosphotransferase system; 2.70A {Escherichia coli} SCOP: a.4.5.63 c.55.1.10 c.55.1.10 PDB: 3bp8_A

Probab=99.23  E-value=3.3e-11  Score=92.77  Aligned_cols=93  Identities=13%  Similarity=0.108  Sum_probs=74.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      ...|+||||+|+|++|++++|. +|+++.+.+.+++         +.+++++++.+.+.+++++++   .+.+..+|.+|
T Consensus        83 ~~~~~lgiDiG~t~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~l~~~i~~~~~~---~~~~~~~i~gi  149 (406)
T 1z6r_A           83 EAWHYLSLRISRGEIFLALRDL-SSKLVVEESQELA---------LKDDLPLLDRIISHIDQFFIR---HQKKLERLTSI  149 (406)
T ss_dssp             TTCEEEEEEEETTEEEEEEEET-TCCEEEEEEEECC---------SSCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEE
T ss_pred             CccEEEEEEEcCCEEEEEEEcC-CCCEEEEEEecCC---------CCCHHHHHHHHHHHHHHHHHh---cCCCcCceeEE
Confidence            3578999999999999999999 9999988777662         246778899999999998876   45556789999


Q ss_pred             EEecCcceEEEEeCCCCcccc-cce-eecCCC
Q psy1582          91 GITNQRETTVVWDLNTGEPLY-NAI-EQGLRI  120 (129)
Q Consensus        91 gis~~~~g~v~~d~~~g~~~~-~~i-~w~d~r  120 (129)
                      ||+.++    ++|.++|.+.. |.+ .|.+..
T Consensus       150 gi~~pG----~vd~~~g~v~~~~~l~~w~~~~  177 (406)
T 1z6r_A          150 AITLPG----IIDTENGIVHRMPFYEDVKEMP  177 (406)
T ss_dssp             EEEESS----EEETTTTEEEECTTCTTCSSBC
T ss_pred             EEEeec----CEeCCCCEEecCCCCCCccCCC
Confidence            999887    67876677663 455 687743

>3r8e_A Hypothetical sugar kinase; ribonuclease H-like motif, structural genomics, joint center structural genomics, JCSG; HET: MSE; 1.65A {Cytophaga hutchinsonii}

Probab=99.19  E-value=2.5e-11  Score=90.94  Aligned_cols=94  Identities=5%  Similarity=0.003  Sum_probs=70.6

Q ss_pred             CCCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582           8 AVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus         8 ~~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      .-....|+||||+|+|++|++++|. +|+++.+.+.+++.        ..+++++++.+.+.++++++.       ..++
T Consensus        14 ~~~~~~~~lgidiggt~i~~~l~d~-~g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~-------~~~i   77 (321)
T 3r8e_A           14 NLYFQGMILGIDVGGTSVKFGLVTP-EGEIQNATRFMTAD--------WVNGIGFVESMKLEIGNFLKQ-------YPIV   77 (321)
T ss_dssp             -----CCEEEEECCSSEEEEEEECT-TCCEEEEEEEEHHH--------HHTTTCHHHHHHHHHHHHHHH-------CTTC
T ss_pred             hhccCcEEEEEEECCCEEEEEEEcC-CCcEEEEEEEeCCC--------CCCHHHHHHHHHHHHHHHHhc-------cCCe
Confidence            3345679999999999999999999 99999988877652        135677888888888887642       3679


Q ss_pred             eEEEEecCcceEEEEeCCCCcccc-ccee-ecCCCc
Q psy1582          88 VTLGITNQRETTVVWDLNTGEPLY-NAIE-QGLRIV  121 (129)
Q Consensus        88 ~~Igis~~~~g~v~~d~~~g~~~~-~~i~-w~d~r~  121 (129)
                      .+|||+.++    ++|.++|.+.. +.+. |.+.+.
T Consensus        78 ~gigi~~pG----~vd~~~g~v~~~~~l~~w~~~~l  109 (321)
T 3r8e_A           78 KGVGIGWPG----LVSLDRTKVILLPNIPSVVNVPI  109 (321)
T ss_dssp             CEEEEEESS----EECTTSCCEEEBTTBCCCCSCCH
T ss_pred             eEEEEEecc----cEECCCCEEEeCCCCccccCCCH
Confidence            999999987    67866687764 4555 988554

>4db3_A Glcnac kinase, N-acetyl-D-glucosamine kinase; structural genomics, center for structural genomics of infec diseases, csgid, transferase; 1.95A {Vibrio vulnificus}

Probab=99.18  E-value=4.4e-11  Score=89.96  Aligned_cols=86  Identities=9%  Similarity=0.026  Sum_probs=68.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|+|++|++++|. +|+++.+.+.+++.         .+++.+++.+.+.++++..+.       ..+.+|||+
T Consensus        25 ~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~-------~~~~gigi~   87 (327)
T 4db3_A           25 MYYGFDVGGTKIEFGAFNE-KLERVATERVPTPT---------DDYPLLLETIAGLVAKYDQEF-------ACEGKIGLG   87 (327)
T ss_dssp             CEEEEEECSSEEEEEEECT-TCCEEEEEEEECCT---------TCHHHHHHHHHHHHHHHHHHH-------TSCCEEEEE
T ss_pred             EEEEEEECCCEEEEEEEeC-CCcEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHHhc-------CCccEEEEE
Confidence            7999999999999999999 99999988776641         268889999999888887652       347899999


Q ss_pred             cCcceEEEEeCCCCcccccceee-cCCC
Q psy1582          94 NQRETTVVWDLNTGEPLYNAIEQ-GLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~~i~w-~d~r  120 (129)
                      .++    ++|.++|.+..+.+.| .+..
T Consensus        88 ~pG----~vd~~~g~v~~~~~~~~~~~~  111 (327)
T 4db3_A           88 LPG----MEDADDATVLTVNVPAAKGKP  111 (327)
T ss_dssp             ESE----EECTTTCCEEESSSGGGTTSC
T ss_pred             eec----cEeCCCCEEEcCCCccccCCC
Confidence            876    6787668877676766 5543

>2yhw_A Bifunctional UDP-N-acetylglucosamine 2-epimerase/N-acetylmannosamine kinase; transferase, sialic acid, mannac, ROK family; HET: BM3 2PE; 1.64A {Homo sapiens} PDB: 2yhy_A* 2yi1_A* 3eo3_A

Probab=99.16  E-value=1.2e-10  Score=87.75  Aligned_cols=90  Identities=17%  Similarity=0.008  Sum_probs=69.6

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ..|+||||+|+|++|++++|. +|+++.+.+.+++          .+++++++.+.+.+++++.+.   +....+|.+||
T Consensus        29 ~~~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~----------~~~~~~~~~i~~~i~~~~~~~---~~~~~~i~gig   94 (343)
T 2yhw_A           29 TLSALAVDLGGTNLRVAIVSM-KGEIVKKYTQFNP----------KTYEERINLILQMCVEAAAEA---VKLNCRILGVG   94 (343)
T ss_dssp             EEEEEEEEECSSEEEEEEEET-TSCEEEEEEEECC----------SSHHHHHHHHHHHHHHHHHHH---HHTTEEEEEEE
T ss_pred             CcEEEEEEECCCEEEEEEECC-CCcEEEEEEEcCC----------CCHHHHHHHHHHHHHHHHHhc---ccccCceEEEE
Confidence            468999999999999999999 9999987766542          367888899999888887652   22345799999


Q ss_pred             EecCcceEEEEeCCCCcccc-cce--eecCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLY-NAI--EQGLR  119 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~-~~i--~w~d~  119 (129)
                      |+.++    ++|.++|.++. |.+  .|.+.
T Consensus        95 i~~pG----~vd~~~g~v~~~~~~~~~w~~~  121 (343)
T 2yhw_A           95 ISTGG----RVNPREGIVLHSTKLIQEWNSV  121 (343)
T ss_dssp             EEESS----EEETTTTEEEECCTTSSSCSSE
T ss_pred             Eeccc----CEeCCCCEEEeCCcCCCCCcCC
Confidence            99887    67876677653 433  58763

>3htv_A D-allose kinase, allokinase; NP_418508.1, structural genomics, joint CEN structural genomics, JCSG, protein structure initiative; HET: MSE; 1.95A {Escherichia coli k-12}

Probab=99.06  E-value=1.5e-10  Score=86.59  Aligned_cols=87  Identities=6%  Similarity=0.030  Sum_probs=65.4

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ..|+||||+|+|++|++++|. +|+++.+.+.+++.         ..++.+++.+.+.+++++++.   +   .++.+||
T Consensus         6 ~~~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~---~---~~i~gig   69 (310)
T 3htv_A            6 HNVVAGVDMGATHIRFCLRTA-EGETLHCEKKRTAE---------VIAPGLVSGIGEMIDEQLRRF---N---ARCHGLV   69 (310)
T ss_dssp             EEEEEEEEECSSEEEEEEEET-TSCEEEEEEEEHHH---------HHTTCHHHHHHHHHHHHHHHH---T---EEEEEEE
T ss_pred             CCEEEEEEeCCCEEEEEEECC-CCCEEEEEEecCcc---------ccHHHHHHHHHHHHHHHHHhc---C---CCeeEEE
Confidence            358999999999999999999 99999887766531         124556777777777776541   1   3589999


Q ss_pred             EecCcceEEEEeCCCCcccc-cceeecC
Q psy1582          92 ITNQRETTVVWDLNTGEPLY-NAIEQGL  118 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~-~~i~w~d  118 (129)
                      |+.++    ++|.++|.+.+ |.+.|.+
T Consensus        70 i~~pG----~vd~~~g~v~~~~~l~~~~   93 (310)
T 3htv_A           70 MGFPA----LVSKDKRTIISTPNLPLTA   93 (310)
T ss_dssp             EEESS----CBCTTSSCBCSCCSSSCCH
T ss_pred             Eeccc----cEeCCCCEEEeCCCCCCcc
Confidence            99887    67877687764 5567764

>2ch5_A NAGK protein; transferase, N-acetylglucosamine, glcnac, sugar kinase, RIBO H fold, sugar kinase/HSP70/actin superfamily, domain rotati conformation; HET: NAG NDG; 1.9A {Homo sapiens} SCOP: c.55.1.5 c.55.1.5 PDB: 2ch6_A*

Probab=99.05  E-value=5.7e-10  Score=83.90  Aligned_cols=76  Identities=14%  Similarity=0.128  Sum_probs=60.4

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCC-CeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRD-DIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~-~I~~   89 (129)
                      |++|+||||+|+|++|++++|. +|+++.+.+.+..      .+.+.+++++++.+.+.+++++++   .+.++. +|.+
T Consensus         4 M~~~~lgiDiGgt~~~~~l~d~-~g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~---~~~~~~~~i~g   73 (347)
T 2ch5_A            4 MAAIYGGVEGGGTRSEVLLVSE-DGKILAEADGLST------NHWLIGTDKCVERINEMVNRAKRK---AGVDPLVPLRS   73 (347)
T ss_dssp             SSCEEEEEEECTTCEEEEEEET-TSCEEEEEEECCC------CHHHHCHHHHHHHHHHHHHHHHHH---HTCCTTCCBSE
T ss_pred             cceEEEEEEcCccceEEEEEeC-CCCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHHh---cCCCcccceeE
Confidence            3459999999999999999999 9999987765321      111247889999999999998876   455555 7999


Q ss_pred             EEEecCc
Q psy1582          90 LGITNQR   96 (129)
Q Consensus        90 Igis~~~   96 (129)
                      |||+.+|
T Consensus        74 igi~~pG   80 (347)
T 2ch5_A           74 LGLSLSG   80 (347)
T ss_dssp             EEEEETT
T ss_pred             EEEeccC
Confidence            9999887

>1zc6_A Probable N-acetylglucosamine kinase; NESG, Q7NU07_chrvo, CVR23, struc genomics, PSI, protein structure initiative; 2.20A {Chromobacterium violaceum} SCOP: c.55.1.5 c.55.1.5

Probab=99.05  E-value=6.7e-10  Score=82.50  Aligned_cols=78  Identities=15%  Similarity=0.151  Sum_probs=61.3

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe--eEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI--VTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I--~~I   90 (129)
                      .|+||||+|+|++|++++|. +|+++.+.+.+..     +  ..++++++++.+.+.+++++++   .+.++.+|  .+|
T Consensus        11 ~~~lGiDiGgT~i~~~l~d~-~G~il~~~~~~~~-----~--~~~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~~~~i   79 (305)
T 1zc6_A           11 RYLIGVDGGGTGTRIRLHAS-DGTPLAMAEGGAS-----A--LSQGIAKSWQAVLSTLEAAFQQ---AGLPAAPASACAI   79 (305)
T ss_dssp             CEEEEEEECSSCEEEEEEET-TCCEEEEEEESCC-----C--GGGCHHHHHHHHHHHHHHHHHH---TTCCCCCGGGEEE
T ss_pred             CEEEEEEcCccceEEEEEcC-CCCEEEEEeCCCC-----C--cccCHHHHHHHHHHHHHHHHHh---cCCChhhhccceE
Confidence            59999999999999999999 8999987655321     0  1157889999999999998876   56666777  788


Q ss_pred             EEecCcceEEEEeCC
Q psy1582          91 GITNQRETTVVWDLN  105 (129)
Q Consensus        91 gis~~~~g~v~~d~~  105 (129)
                      ||+.++    ++|.+
T Consensus        80 gig~pG----~v~~~   90 (305)
T 1zc6_A           80 GLGLSG----VHNRQ   90 (305)
T ss_dssp             EEEESC----CCTTS
T ss_pred             EEEecC----CCchH
Confidence            888876    45654

>3vov_A Glucokinase, hexokinase; ROK, sugar kinase, transferase; 2.02A {Thermus thermophilus}

Probab=98.98  E-value=2.4e-10  Score=85.07  Aligned_cols=86  Identities=9%  Similarity=-0.000  Sum_probs=63.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|+|++|++++|. ++ ++.+.+.+++.         .+++.+++.+.+.+++++++   .   ..++.+|||+
T Consensus         2 ~~lgiDiGgt~i~~~l~d~-~~-~l~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~---~---~~~i~gigi~   64 (302)
T 3vov_A            2 KVVGLDLGGTKIAAGVFDG-KR-LLSKVVVPTPK---------EGGERVAEALAEAAERAERE---A---GVRGEAIGLG   64 (302)
T ss_dssp             CEEEEEECSSEEEEEEECS-SS-BSCCEEEECCS---------SCHHHHHHHHHHHHHHHHHH---H---TCCCSSEEEE
T ss_pred             EEEEEEEcCCEEEEEEEeC-CC-cEEEEEEcCCC---------CChHHHHHHHHHHHHHHHhh---c---cCCceEEEEE
Confidence            7999999999999999998 65 55655665531         23478888898888888765   1   3679999999


Q ss_pred             cCcceEEEEeCCCCcccc-cce-eecCCC
Q psy1582          94 NQRETTVVWDLNTGEPLY-NAI-EQGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~-~~i-~w~d~r  120 (129)
                      .++    ++|.++|.+.. +.+ .|.+..
T Consensus        65 ~pG----~vd~~~g~v~~~~~~~~w~~~~   89 (302)
T 3vov_A           65 TPG----PLDFRRGVIRFAPNIPGVQDFP   89 (302)
T ss_dssp             ESS----CEETTTTEEC---CCTTCTTCC
T ss_pred             ecc----cEeCCCCEEEcCCCCCCcCCCC
Confidence            887    67877677663 445 688754

>4htl_A Beta-glucoside kinase; structural genomics, sugar kinase, ROK family, PSI-biology, center for structural genomics, MCSG, transferase; HET: MSE; 1.64A {Listeria monocytogenes}

Probab=98.90  E-value=3.9e-09  Score=78.25  Aligned_cols=83  Identities=14%  Similarity=0.121  Sum_probs=60.4

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|+|++|++++|. +|+++.+.+.+++.         .+++.+++.+.    +.+.+       ..++.+|||
T Consensus         4 m~~lgiDiGgt~i~~~l~d~-~G~il~~~~~~~~~---------~~~~~~~~~i~----~~~~~-------~~~i~gigi   62 (297)
T 4htl_A            4 MKIAAFDIGGTALKMGVVLP-HGEIILTKSAEISG---------SDGDQILAEMK----VFLAE-------NTDVTGIAV   62 (297)
T ss_dssp             CCEEEEEECSSEEEEEEECT-TSCEEEEEEEECST---------TCHHHHHHHHH----HHHHT-------CTTCCEEEE
T ss_pred             cEEEEEEeCCCeEEEEEECC-CCCEEEEEEecCCC---------CCHHHHHHHHH----HHHhh-------cCCeeEEEE
Confidence            37999999999999999999 99999988776531         24455554443    33332       257999999


Q ss_pred             ecCcceEEEEeCCCCcccc-cce-eecCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLY-NAI-EQGLRI  120 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~-~~i-~w~d~r  120 (129)
                      +.++    ++|.++|.+.. |.+ .|.+..
T Consensus        63 ~~pG----~vd~~~g~v~~~~~l~~w~~~~   88 (297)
T 4htl_A           63 SAPG----YVNPKTGLITMGGAIRRFDNFN   88 (297)
T ss_dssp             EESS----EECTTTCEEEECTTCGGGTTEE
T ss_pred             ecCc----ceeCCCCEEEeCCCCCCccCCC
Confidence            9887    77976688765 445 588744

>2ap1_A Putative regulator protein; zinc binding protein, structural genomics, PSI, protein STRU initiative; 1.90A {Salmonella typhimurium} SCOP: c.55.1.10 c.55.1.10

Probab=98.89  E-value=8.4e-09  Score=77.09  Aligned_cols=86  Identities=9%  Similarity=0.027  Sum_probs=64.5

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ..++||||+|+|++|++++|. +|+++.+.+.+++.         .+++++++.+.+.++++..+.       ..+.+||
T Consensus        23 ~~~~lgiDiGgt~i~~~l~d~-~g~il~~~~~~~~~---------~~~~~~~~~i~~~i~~~~~~~-------~~i~~ig   85 (327)
T 2ap1_A           23 NAMYYGFDIGGTKIALGVFDS-TRRLQWEKRVPTPH---------TSYSAFLDAVCELVEEADQRF-------GVKGSVG   85 (327)
T ss_dssp             CCEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCC---------SCHHHHHHHHHHHHHHHHHHH-------TSCCEEE
T ss_pred             CceEEEEEECCCEEEEEEEeC-CCCEEEEEEecCCC---------CCHHHHHHHHHHHHHHHHHhc-------CCccEEE
Confidence            358999999999999999999 99999887776531         257778888888888776541       3478899


Q ss_pred             EecCcceEEEEeCCCCcccccce-eecC
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAI-EQGL  118 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i-~w~d  118 (129)
                      |+.++    ++|.++|.+..+.+ .|.+
T Consensus        86 i~~pG----~vd~~~g~v~~~~~~~~~~  109 (327)
T 2ap1_A           86 IGIPG----MPETEDGTLYAANVPAASG  109 (327)
T ss_dssp             EEESS----BSCCTTSCCBCTTCTTTTT
T ss_pred             EEeee----eEECCCCEEEccCCCccCC
Confidence            99887    67876576654333 4554

>2gup_A ROK family protein; sugar kinase, streptococcus pneumoniae TIGR4, AP sucrose, structural genomics, PSI; HET: SUC; 2.01A {Streptococcus pneumoniae} SCOP: c.55.1.10 c.55.1.10

Probab=98.78  E-value=1.6e-08  Score=74.34  Aligned_cols=80  Identities=8%  Similarity=0.023  Sum_probs=57.3

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|+|++|++++|. +|+++.+.+.+++          .+++.+++.+.    +++++        .++.+|||+
T Consensus         5 ~~lgidiggt~i~~~l~d~-~g~il~~~~~~~~----------~~~~~~~~~i~----~~i~~--------~~i~gigi~   61 (292)
T 2gup_A            5 TIATIDIGGTGIKFASLTP-DGKILDKTSISTP----------ENLEDLLAWLD----QRLSE--------QDYSGIAMS   61 (292)
T ss_dssp             CEEEEEEETTEEEEEEECT-TCCEEEEEEECCC----------SSHHHHHHHHH----HHHTT--------SCCSEEEEE
T ss_pred             EEEEEEECCCEEEEEEECC-CCCEEEEEEEeCC----------CCHHHHHHHHH----HHHHh--------CCCcEEEEE
Confidence            5899999999999999999 9999987766542          24555555443    34321        468899999


Q ss_pred             cCcceEEEEeCCCCcccc-ccee-ecCCC
Q psy1582          94 NQRETTVVWDLNTGEPLY-NAIE-QGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~-~~i~-w~d~r  120 (129)
                      .++    ++|.++|.+.+ |.+. |.+..
T Consensus        62 ~pG----~vd~~~g~v~~~~~~~~~~~~~   86 (292)
T 2gup_A           62 VPG----AVNQETGVIDGFSAVPYIHGFS   86 (292)
T ss_dssp             ESS----EECTTTCBEESCCSSGGGSSSB
T ss_pred             ecC----cccCCCCEEEecCCCCcccCCC
Confidence            887    67876687654 4453 76644

>2aa4_A Mannac kinase, putative N-acetylmannosamine kinase; sugar methabolism, structural genomics, PSI, protein structure initiative; 2.20A {Escherichia coli} SCOP: c.55.1.10 c.55.1.10

Probab=98.78  E-value=8.1e-09  Score=75.80  Aligned_cols=84  Identities=8%  Similarity=-0.021  Sum_probs=60.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|+|++|++++|. +|+++.+.+.+++.        ..+++++++.+.+.++++..          ++.+|||+
T Consensus         2 ~~lgidiggt~~~~~l~d~-~g~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~----------~~~~igi~   62 (289)
T 2aa4_A            2 TTLAIDIGGTKLAAALIGA-DGQIRDRRELPTPA--------SQTPEALRDALSALVSPLQA----------HAQRVAIA   62 (289)
T ss_dssp             CEEEEEECSSEEEEEEECT-TCCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTTGG----------GCSEEEEE
T ss_pred             eEEEEEeCCCEEEEEEECC-CCCEEEEEEecCCC--------CCCHHHHHHHHHHHHHHHHh----------hCCEEEEE
Confidence            6899999999999999999 99999888776641        12477777777666655432          24478888


Q ss_pred             cCcceEEEEeCCCCcccc-cce-eecCCC
Q psy1582          94 NQRETTVVWDLNTGEPLY-NAI-EQGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~-~~i-~w~d~r  120 (129)
                      .++    ++|.++|.+.+ |.+ .|.+..
T Consensus        63 ~pG----~vd~~~g~v~~~~~~~~w~~~~   87 (289)
T 2aa4_A           63 STG----IIRDGSLLALNPHNLGGLLHFP   87 (289)
T ss_dssp             ESS----EEETTEEECSSGGGGGGGTTCC
T ss_pred             ecc----ceeCCCCEEEeCCCCCcccCCC
Confidence            876    67876676653 445 487644

>2e2o_A Hexokinase; acetate and sugar kinases, HSP70, actin superfamily, ribonuc fold, sugar kinase, glucose, phosphoryl transfer, transferase; HET: BGC; 1.65A {Sulfolobus tokodaii} PDB: 2e2n_A* 2e2p_A* 2e2q_A*

Probab=98.77  E-value=1e-08  Score=75.69  Aligned_cols=67  Identities=7%  Similarity=0.062  Sum_probs=52.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      |+||||+|+|++|++++|. +|+++.+.+.+++      .+.+.+++++++.+.+.+++++.+        . +.+|||+
T Consensus         3 ~~lgiDiGgt~~~~~l~d~-~g~i~~~~~~~~~------~~~~~~~~~~~~~i~~~i~~~~~~--------~-~~~igi~   66 (299)
T 2e2o_A            3 IIVGVDAGGTKTKAVAYDC-EGNFIGEGSSGPG------NYHNVGLTRAIENIKEAVKIAAKG--------E-ADVVGMG   66 (299)
T ss_dssp             CEEEEEECSSCEEEEEECT-TSCEEEEEEESCC------CHHHHCHHHHHHHHHHHHHHHHTS--------C-CSEEEEE
T ss_pred             EEEEEEeCCCcEEEEEEcC-CCCEEEEEeCCCC------CcccCCHHHHHHHHHHHHHHHHhc--------C-CCEEEEE
Confidence            8999999999999999999 9999988776553      111357888999998888877642        1 6688888


Q ss_pred             cCc
Q psy1582          94 NQR   96 (129)
Q Consensus        94 ~~~   96 (129)
                      .++
T Consensus        67 ~~G   69 (299)
T 2e2o_A           67 VAG   69 (299)
T ss_dssp             ETT
T ss_pred             cCC
Confidence            776

>1hux_A Activator of (R)-2-hydroxyglutaryl-COA dehydratase; actin fold, metal binding protein; HET: ADP; 3.00A {Acidaminococcus fermentans} SCOP: c.55.1.5

Probab=98.76  E-value=1.5e-08  Score=74.32  Aligned_cols=70  Identities=10%  Similarity=0.112  Sum_probs=51.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|+|++|++++|. +|+++.+...+++.          +|.   +.+.+.++++.+    .+++..+|.++++
T Consensus         3 ~~~lGiD~Gst~~k~~l~d~-~g~i~~~~~~~~~~----------~~~---~~~~~~l~~l~~----~~~~~~~i~~i~~   64 (270)
T 1hux_A            3 IYTLGIDVGSTASKCIILKD-GKEIVAKSLVAVGT----------GTS---GPARSISEVLEN----AHMKKEDMAFTLA   64 (270)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TTEEEEEEEEECCS----------SCC---HHHHHHHHHHHH----HTCCGGGCSEEEE
T ss_pred             cEEEEEEeccceEEEEEEeC-CCCEEEEEEecCCC----------CHH---HHHHHHHHHHHH----cCCChhHEEEEEE
Confidence            48999999999999999998 89999987776631          332   334445555543    1445567899999


Q ss_pred             ecCcceEE
Q psy1582          93 TNQRETTV  100 (129)
Q Consensus        93 s~~~~g~v  100 (129)
                      ++++..++
T Consensus        65 TG~g~~~~   72 (270)
T 1hux_A           65 TGYGRNSL   72 (270)
T ss_dssp             ESTTTTTT
T ss_pred             eCccccch
Confidence            99886544

>1woq_A Inorganic polyphosphate/ATP-glucomannokinase; transferase; HET: BGC; 1.80A {Arthrobacter SP} SCOP: c.55.1.10 c.55.1.10

Probab=98.76  E-value=1.1e-08  Score=74.70  Aligned_cols=90  Identities=8%  Similarity=-0.033  Sum_probs=60.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCC-CcEEEE-EEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALT-QEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~-g~iv~~-~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      ..|+||||+|+|++|++++|. + |+++.. .+.+++.        ..+++++++.+.+.++++.++   .+ ....+.+
T Consensus        11 ~~~~lgidiggt~i~~~l~dl-~~g~i~~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~---~~-~~~~~~~   77 (267)
T 1woq_A           11 NAPLIGIDIGGTGIKGGIVDL-KKGKLLGERFRVPTPQ--------PATPESVAEAVALVVAELSAR---PE-APAAGSP   77 (267)
T ss_dssp             CCCEEEEEECSSEEEEEEEET-TTTEEEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHTS---TT-CCCTTCC
T ss_pred             CCEEEEEEECCCEEEEEEEEC-CCCeEEEEEEecCCCc--------cCCHHHHHHHHHHHHHHHHHh---cc-ccCccce
Confidence            357999999999999999998 6 777743 3333321        135788888888888777643   11 1234557


Q ss_pred             EEEecCcceEEEEeCCCCcccc-cce--eecCCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLY-NAI--EQGLRI  120 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~-~~i--~w~d~r  120 (129)
                      |||+.++    ++| + |.+.. |.+  .|.+..
T Consensus        78 igi~~pG----~v~-~-g~v~~~~~l~~~w~~~~  105 (267)
T 1woq_A           78 VGVTFPG----IIQ-H-GVVHSAANVDKSWLNTD  105 (267)
T ss_dssp             EEEEESS----CEE-T-TEECCCTTSCGGGTTCB
T ss_pred             EEEEccc----eEc-C-CEEEeCCCCCCCCCCCC
Confidence            8888876    457 4 77654 455  488754

>3mcp_A Glucokinase; structural genomics, joint center for structural genomics, J protein structure initiative, PSI-2, transferase; 3.00A {Parabacteroides distasonis}

Probab=98.75  E-value=2.6e-09  Score=81.73  Aligned_cols=89  Identities=13%  Similarity=-0.012  Sum_probs=63.7

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEE-EeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSH-SMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~-~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      ...|+||||+|+|+++++++|  +|+++.+. +.+++.         .+++++++.+.+.++ ++.++    + ..++.+
T Consensus         7 d~~~~lgiDIGgt~i~~~l~d--~G~il~~~~~~~~~~---------~~~~~~l~~i~~~~~-~i~~~----~-~~~i~g   69 (366)
T 3mcp_A            7 DNRIVMTLDAGGTNFVFSAIQ--GGKEIADPVVLPACA---------DCLDKCLGNLVEGFK-AIQAG----L-PEAPVA   69 (366)
T ss_dssp             CCCEEEEEECSSSEEEEEEEE--TTEECSCCEEEECCT---------TCHHHHHHHHHHHHH-HHHTT----C-SSCCCE
T ss_pred             CCCEEEEEEECcceEEEEEEE--CCEEEEEEEEEECCC---------CCHHHHHHHHHHHHH-HHHHH----h-hcCCeE
Confidence            357899999999999999999  58888766 665531         167777777766322 33321    1 167999


Q ss_pred             EEEecCcceEEEEeCCCCcccc-cce-eec-CCC
Q psy1582          90 LGITNQRETTVVWDLNTGEPLY-NAI-EQG-LRI  120 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~~~-~~i-~w~-d~r  120 (129)
                      |||+.++    ++|.++|.+.. |.+ .|. +-.
T Consensus        70 IGIavPG----~Vd~~~G~i~~~~nlp~w~~~~~   99 (366)
T 3mcp_A           70 ISFAFPG----PADYQAGIIGDLPNFPSFRGGVA   99 (366)
T ss_dssp             EEEECCS----SEETTTTEECCCTTCGGGTTCBC
T ss_pred             EEEEecc----eEeCCCCEEEeCCCcccccCCCC
Confidence            9999987    67876688764 556 798 644

>3lm2_A Putative kinase; structural genomics, joint center for struc genomics, JCSG, protein structure initiative, PSI-2, transf; HET: MSE; 1.70A {Agrobacterium tumefaciens}

Probab=98.60  E-value=3.5e-08  Score=70.95  Aligned_cols=83  Identities=11%  Similarity=-0.079  Sum_probs=53.9

Q ss_pred             CCCCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582           8 AVAPTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus         8 ~~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      +|+++.+++|||+|+|++|  ++|. +|++  ..+.+++.        ..+++.+.+.+.    +++++        .++
T Consensus         1 ~m~~~~~~lgiDIGGT~i~--~~d~-~g~~--~~~~~t~~--------~~~~~~~~~~i~----~~i~~--------~~i   55 (226)
T 3lm2_A            1 GMAEDQTVLAIDIGGSHVK--IGLS-TDGE--ERKVESGK--------TMTGPEMVAAVT----AMAKD--------MTY   55 (226)
T ss_dssp             -CGGGCCEEEEEECSSEEE--EEET-TTCC--EEEEECCT--------TCCHHHHHHHHH----HHTTT--------CCC
T ss_pred             CCCcCCEEEEEEECCCEEE--EEEC-CCCE--EEEEECCC--------CCCHHHHHHHHH----HHHHh--------CCC
Confidence            3566789999999999999  5788 8876  23444421        135655555443    44432        268


Q ss_pred             eEEEEecCcceEEEEeCCCCcccc-cce--eecCCC
Q psy1582          88 VTLGITNQRETTVVWDLNTGEPLY-NAI--EQGLRI  120 (129)
Q Consensus        88 ~~Igis~~~~g~v~~d~~~g~~~~-~~i--~w~d~r  120 (129)
                      .+|||+.++    ++|.+ +...+ |.+  .|.+..
T Consensus        56 ~gigi~~pG----~Vd~~-~~~~~~~nl~~~w~~~~   86 (226)
T 3lm2_A           56 DVIAMGYPG----PVVHN-KPLREPVNLGEGWVGYD   86 (226)
T ss_dssp             SEEEEEESS----CEETT-EECSCCTTSCSCCTTCC
T ss_pred             CEEEEEEEe----EEECC-eEEEECCcCCccccCCc
Confidence            899999887    67875 55443 345  688744

>2q2r_A Glucokinase 1, putative; ATPase hexose kinase family, transferase; HET: BGC ADP; 2.10A {Trypanosoma cruzi}

Probab=98.59  E-value=8.4e-08  Score=73.06  Aligned_cols=85  Identities=8%  Similarity=-0.080  Sum_probs=58.4

Q ss_pred             CCeEEEEeCCCCceeEEEEeCC---CCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          12 TQIRDRLSATYHTSRVLIISAL---TQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~---~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      +.|+||||+|+|++|++++|..   +|+++.+.+. ++    .     .+++.+++.+.+.++++...      .+.++.
T Consensus        28 ~~~~lgiDiGgt~i~~~l~d~~~~~~g~il~~~~~-~~----~-----~~~~~~~~~i~~~i~~~~~~------~~~~i~   91 (373)
T 2q2r_A           28 APLTFVGDVGGTSARMGFVREGKNDSVHACVTRYS-MK----R-----KDITEIIEFFNEIIELMPAS------VMKRVK   91 (373)
T ss_dssp             SCEEEEEEECSSEEEEEEEEECGGGCEEEEEEEEE-CT----T-----CBGGGHHHHHHHHHHHSCHH------HHTTEE
T ss_pred             CCeEEEEEEccccEEEEEEecccCCCccEEEEeee-cC----C-----CCHHHHHHHHHHHHHHHhhc------cccccc
Confidence            4689999999999999999951   4788776541 11    1     24666777777766655432      135699


Q ss_pred             EEEEecCcceEEEEeCCCCcccccceeecC
Q psy1582          89 TLGITNQRETTVVWDLNTGEPLYNAIEQGL  118 (129)
Q Consensus        89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~d  118 (129)
                      +|||+.++    ++|.  |.+..|...|.+
T Consensus        92 gigi~~pG----~vd~--g~v~~~~~~~~~  115 (373)
T 2q2r_A           92 AGVINVPG----PVTG--GAVGGPFNNLKG  115 (373)
T ss_dssp             EEEEEESS----CEET--TTEECCCSSSBS
T ss_pred             EEEEEeec----cccC--CEEeccCCCCCC
Confidence            99999887    5676  555544445766

>1sz2_A Glucokinase, glucose kinase; ATP-dependent, glucose binding, transferase; HET: MSE BGC; 2.20A {Escherichia coli} SCOP: c.55.1.7 PDB: 1q18_A*

Probab=98.59  E-value=3.9e-08  Score=73.80  Aligned_cols=79  Identities=8%  Similarity=-0.102  Sum_probs=52.3

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      +.|+||||||+|++|++++|.++|+++.+.+.++..           .+    .+.+.+++++++   .+   .++.+||
T Consensus        13 ~~~~lgiDiGGT~i~~~l~dl~~g~i~~~~~~~~~~-----------~~----~~~~~i~~~~~~---~~---~~i~gig   71 (332)
T 1sz2_A           13 TKYALVGDVGGTNARLALCDIASGEISQAKTYSGLD-----------YP----SLEAVIRVYLEE---HK---VEVKDGC   71 (332)
T ss_dssp             -CEEEEEEEETTEEEEEEEETTTCCEEEEEEEEGGG-----------CS----CHHHHHHHHHHH---SC---CCCCEEE
T ss_pred             CCEEEEEEechhheEEEEEECCCCcEEEEEEecCCC-----------cC----CHHHHHHHHHHh---cC---CCccEEE
Confidence            579999999999999999994268888765554421           11    233344455554   22   3688999


Q ss_pred             EecCcceEEEEeCCCCcccccceeec
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNAIEQG  117 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~i~w~  117 (129)
                      |+.++    ++|.  +....+.+.|.
T Consensus        72 i~~pG----~vd~--~~~~~~nl~w~   91 (332)
T 1sz2_A           72 IAIAC----PITG--DWVAMTNHTWA   91 (332)
T ss_dssp             EEESS----CCCS--SEECCSSSCCC
T ss_pred             EEEeC----ceeC--CEEeeeCCCCc
Confidence            99887    5673  55444556785

>2yhx_A Hexokinase B; transferase(phosphoryl,alcohol acceptr); HET: OTG; 2.10A {Saccharomyces cerevisiae} SCOP: i.12.1.1 PDB: 1hkg_A

Probab=98.40  E-value=1e-06  Score=69.18  Aligned_cols=82  Identities=6%  Similarity=-0.076  Sum_probs=54.8

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCcE---EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCC
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQEE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG   81 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~i---v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~   81 (129)
                      -|.+... +.+||||+|+|++|+++++. +|++   +...+.+++.    .- ...+++++++.+.+++++++++.   +
T Consensus        54 ~P~G~E~-G~~laiDlGGTnirv~lV~~-~G~~~~~~~~~~~~ip~----~~-~~~~~~~lfd~Ia~~i~~~~~~~---~  123 (457)
T 2yhx_A           54 QVSGAQA-GSFLAIVMGGGDLEVILISL-AGRQESSIXASRSLAAA----MS-TTAIPSDLWGNXAXSNAAFSSXE---F  123 (457)
T ss_dssp             CCCSCCC-EEEEEEEECSSEEEEEEEEE-ETTEEEEEEEEEECCTT----TT-SCSCTHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCCCCcc-ceEEEEEeCCCeEEEEEEEe-CCCeeEEEeeEEEEcCC----cc-CCCCHHHHHHHHHHHHHHHHhhc---c
Confidence            4555543 45699999999999999999 8988   4444554431    10 12267889999999999988752   2


Q ss_pred             CCCCC--eeEEEEecCc
Q psy1582          82 LSRDD--IVTLGITNQR   96 (129)
Q Consensus        82 ~~~~~--I~~Igis~~~   96 (129)
                      ....+  +.|+|++.++
T Consensus       124 ~~~~~~~~lGi~fs~P~  140 (457)
T 2yhx_A          124 SSXAGSVPLGFTFXEAG  140 (457)
T ss_dssp             SSCSSCEEEEEECCSCC
T ss_pred             cccccccceeeEEEEEE
Confidence            22122  4566666554

>1bdg_A Hexokinase; phosphotransferase; HET: GLC; 2.60A {Schistosoma mansoni} SCOP: c.55.1.3 c.55.1.3

Probab=98.37  E-value=9.5e-07  Score=69.26  Aligned_cols=84  Identities=17%  Similarity=0.155  Sum_probs=55.5

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCC-cE---EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCC
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQ-EE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG   81 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g-~i---v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~   81 (129)
                      |.+.. .+.+||||+|+|++|+++++. +| +-   +...+.+.+...     ...+.+++++.+.+++++.+++   .+
T Consensus        62 P~G~E-~G~~lalDlGGTn~Rv~~V~l-~G~~~~~~i~~~~~~ip~~~-----~~~~~~~lfd~Ia~~i~~~l~~---~~  131 (451)
T 1bdg_A           62 PNGTE-TGNFLALDLGGTNYRVLSVTL-EGKGKSPRIQERTYCIPAEK-----MSGSGTELFKYIAETLADFLEN---NG  131 (451)
T ss_dssp             CCSCC-CEEEEEEEESSSSEEEEEEEE-CC-CCCCEEEEEEECCCTTT-----TTSBHHHHHHHHHHHHHHHHHH---TT
T ss_pred             CCCCc-cceEEEEEeCCCeEEEEEEec-CCCCcceEEEEEEEecCCcc-----cCCCHHHHHHHHHHHHHHHHHh---cC
Confidence            44443 356799999999999999999 88 51   112333333110     1235788999999999999876   45


Q ss_pred             CCCCCeeEEEEecCcceEEEEeC
Q psy1582          82 LSRDDIVTLGITNQRETTVVWDL  104 (129)
Q Consensus        82 ~~~~~I~~Igis~~~~g~v~~d~  104 (129)
                      .... ...+|++.++    |++.
T Consensus       132 ~~~~-~~~lG~tfsf----Pv~q  149 (451)
T 1bdg_A          132 MKDK-KFDLGFTFSF----PCVQ  149 (451)
T ss_dssp             CCSS-CEEEEEEECS----CEEE
T ss_pred             CCcc-ccceEEEEee----Eecc
Confidence            4333 3667777665    5564

>1zbs_A Hypothetical protein PG1100; alpha-beta protein., structural genomics, PSI, protein struc initiative; 2.30A {Porphyromonas gingivalis} SCOP: c.55.1.5 c.55.1.5

Probab=98.37  E-value=5.4e-07  Score=66.42  Aligned_cols=69  Identities=14%  Similarity=0.013  Sum_probs=49.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|+|++|++++|  +|+++.+.+.+...    +  ...+++.+++.+.+.++++.      +.+..++.+||++
T Consensus         1 ~~lgiDiGGT~~~~~l~d--~g~il~~~~~~~~~----~--~~~~~~~~~~~i~~~i~~~~------~~~~~~i~~igig   66 (291)
T 1zbs_A            1 MILIGDSGSTKTDWCIAK--EGKSLGRFQTSGIN----P--FQQDRNEIDTALRSEVLPAI------GQKASSIRAVYFY   66 (291)
T ss_dssp             CEEEEEECSSEEEEEEEE--TTEEEEEEEEECCC----T--TTSCHHHHHHHHTTTTHHHH------TTSTTTCCEEEEE
T ss_pred             CEEEEEeCccceEEEEEe--CCeEEEEEECCCCC----c--ccCCHHHHHHHHHHHHHHHh------CCCcccccEEEEE
Confidence            479999999999999999  58998877653310    0  01257777877777776543      2234678899999


Q ss_pred             cCc
Q psy1582          94 NQR   96 (129)
Q Consensus        94 ~~~   96 (129)
                      .++
T Consensus        67 ~pG   69 (291)
T 1zbs_A           67 GAG   69 (291)
T ss_dssp             ETT
T ss_pred             CCC
Confidence            877

>1saz_A Probable butyrate kinase 2; askha (acetate and sugar kinases, HSC70, actin) superfamily, acetate kinase, isobutyrate kinase; HET: ACP; 2.50A {Thermotoga maritima} SCOP: c.55.1.2 c.55.1.2 PDB: 1x9j_A*

Probab=98.35  E-value=3.8e-07  Score=69.90  Aligned_cols=81  Identities=12%  Similarity=0.113  Sum_probs=52.9

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHH---HHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAV---QTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i---~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      +++||||+|+|++|++++|. + +++.+.+.+++....      .+++.+++.+   .+.+.+++++   .+....+|.+
T Consensus         2 ~~vlgidiGgt~ik~al~d~-~-~il~~~~~~~~~~~~------~~~~~~~~~~~~~~~~i~~~l~~---~~~~~~~i~g   70 (381)
T 1saz_A            2 FRILTINPGSTSTKLSIFED-E-RMVKMQNFSHSPDEL------GRFQKILDQLEFREKIARQFVEE---TGYSLSSFSA   70 (381)
T ss_dssp             CEEEEEEECSSEEEEEEEET-T-EEEEEEEEECCHHHH------HTCSSGGGGHHHHHHHHHHHHHT---TTCCGGGCSE
T ss_pred             CeEEEEECCccceeEEEEec-c-hheeeeecccCcccc------cchhhHHHHHHHHHHHHHHHHHH---cCCCccCceE
Confidence            47899999999999999997 6 888887776642100      0112223334   5555566554   4555567889


Q ss_pred             EEEecCcceEEEEeCCCCcc
Q psy1582          90 LGITNQRETTVVWDLNTGEP  109 (129)
Q Consensus        90 Igis~~~~g~v~~d~~~g~~  109 (129)
                      | ++.+|    ++|..+|.+
T Consensus        71 I-i~~pG----~vd~~~G~~   85 (381)
T 1saz_A           71 F-VSRGG----LLDPIPGGV   85 (381)
T ss_dssp             E-EEECC----SCSCBCSSE
T ss_pred             E-EecCC----CCCCCCCce
Confidence            9 88766    456544655

>4ehu_A Activator of 2-hydroxyisocaproyl-COA dehydratase; actin fold, ATPase, electron transfer, ATP/ADP binding; HET: ANP; 1.60A {Clostridium difficile} PDB: 4eht_A* 4eia_A

Probab=98.21  E-value=4.4e-06  Score=60.83  Aligned_cols=65  Identities=18%  Similarity=0.254  Sum_probs=45.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +|+||||+|+|++|++++|. +++++.....+..          ..++.    ..+.+++++++   ++....++..++.
T Consensus         1 M~~lGID~GsT~tk~av~d~-~~~il~~~~~~~g----------~~~e~----a~~vl~~~~~~---a~~~~~~~~~~a~   62 (276)
T 4ehu_A            1 MYTMGLDIGSTASKGVILKN-GEDIVASETISSG----------TGTTG----PSRVLEKLYGK---TGLAREDIKKVVV   62 (276)
T ss_dssp             CEEEEEEECSSCEEEEEEET-TTEEEEEEEESCC----------TTSSH----HHHHHHHHHHH---HCCCGGGEEEEEE
T ss_pred             CeEEEEEcCccEEEEEEEEC-CCeEEEEEEecCC----------CCHHH----HHHHHHHHHHH---CCCcchhcccccc
Confidence            48999999999999999998 8888876544321          12222    22345566665   5777778888877


Q ss_pred             ecC
Q psy1582          93 TNQ   95 (129)
Q Consensus        93 s~~   95 (129)
                      +..
T Consensus        63 t~~   65 (276)
T 4ehu_A           63 TGY   65 (276)
T ss_dssp             EST
T ss_pred             Cch
Confidence            764

>1zxo_A Conserved hypothetical protein Q8A1P1; NESG, BTR25, structural genomics, PSI, protein structure initiative; 3.20A {Bacteroides thetaiotaomicron} SCOP: c.55.1.5 c.55.1.5

Probab=98.17  E-value=1.8e-07  Score=68.98  Aligned_cols=67  Identities=7%  Similarity=-0.027  Sum_probs=36.1

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||+|+|++|++++|  +|+++.+.+.+...  +.    ..+++.+++.+.+.+++++.        ..++.+||++
T Consensus         1 ~~lgiDiGGT~i~~~l~d--~g~il~~~~~~~~~--~~----~~~~~~~~~~i~~~i~~~~~--------~~~i~~igig   64 (291)
T 1zxo_A            1 MILIADSGSTKTDWCVVL--NGAVIKRLGTKGIN--PF----FQSEEEIQQKLTASLLPQLP--------EGKFNAVYFY   64 (291)
T ss_dssp             ---CEECCTTCEEEEEEC--SSSEEEEEEECCCC--TT----TSCSTTTTTTTTC---------------------CEEE
T ss_pred             CEEEEEeccccEEEEEEc--CCeEEEEEECCCCC--cc----cCCHHHHHHHHHHHHHHhcC--------cccccEEEEE
Confidence            479999999999999999  58999876654311  00    11344555566665555432        2468889999


Q ss_pred             cCc
Q psy1582          94 NQR   96 (129)
Q Consensus        94 ~~~   96 (129)
                      .++
T Consensus        65 ~pG   67 (291)
T 1zxo_A           65 GAG   67 (291)
T ss_dssp             CTT
T ss_pred             cCC
Confidence            877

>3djc_A Type III pantothenate kinase; structural genomics, putative transfera 2, protein structure initiative; 2.40A {Legionella pneumophila subsp}

Probab=98.10  E-value=5.8e-06  Score=60.69  Aligned_cols=67  Identities=7%  Similarity=0.017  Sum_probs=47.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .+|+||+|.|++|.++||.  ++++...+.+++ .        ...+++..    .++++++.   .+.++++|.++++|
T Consensus         3 MlL~IDIGNT~iK~gl~d~--~~l~~~~r~~T~-~--------~t~de~~~----~l~~ll~~---~~~~~~~I~~iiIS   64 (266)
T 3djc_A            3 LILCIDVGNSHIYGGVFDG--DEIKLRFRHTSK-V--------STSDELGI----FLKSVLRE---NNCSPETIRKIAIC   64 (266)
T ss_dssp             CEEEEEECSSEEEEEEEET--TEEEEEEEEECS-C--------CCHHHHHH----HHHHHHHT---TTCCGGGCCEEEEE
T ss_pred             eEEEEEECCCeEEEEEEEC--CEEEEEEEecCC-C--------CCHHHHHH----HHHHHHHH---cCCChhhceEEEEe
Confidence            4799999999999999995  588877776653 1        34555443    34455554   46667789999999


Q ss_pred             cCcce
Q psy1582          94 NQRET   98 (129)
Q Consensus        94 ~~~~g   98 (129)
                      +.++.
T Consensus        65 SVvp~   69 (266)
T 3djc_A           65 SVVPQ   69 (266)
T ss_dssp             ESCHH
T ss_pred             cchHh
Confidence            88643

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=98.10  E-value=5e-06  Score=70.20  Aligned_cols=92  Identities=12%  Similarity=0.092  Sum_probs=57.8

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc----E-EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhC
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE----E-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH   80 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~----i-v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~   80 (129)
                      |.+.. .+.+||||+|+|++|+++++. +|+    + +.+.+.+++...     ...+.+++++.+.+++++++++   .
T Consensus        72 P~G~E-~G~~laiDlGGTnirv~lv~~-~G~~~~~i~~~~~~~~ip~~~-----~~~~~~~lf~~Ia~~i~~~l~~---~  141 (917)
T 1cza_N           72 PDGSE-KGDFIALDLGGSSFRILRVQV-NHEKNQNVHMESEVYDTPENI-----VHGSGSQLFDHVAECLGDFMEK---R  141 (917)
T ss_dssp             CCSCC-CEEEEEEEESSSSEEEEEEEE-EEETTEEEEEEEEEECCCHHH-----HSSBHHHHHHHHHHHHHHHHHH---H
T ss_pred             CCCCC-cceEEEEEeCCCeEEEEEEEe-cCCCcceEEEEEEEEECCccc-----ccCCHHHHHHHHHHHHHHHHHh---c
Confidence            44433 356799999999999999998 776    4 555555554210     0125788999999999998775   2


Q ss_pred             CCCCCC-eeEEEEecCcceEEEEeCCCCccc
Q psy1582          81 GLSRDD-IVTLGITNQRETTVVWDLNTGEPL  110 (129)
Q Consensus        81 ~~~~~~-I~~Igis~~~~g~v~~d~~~g~~~  110 (129)
                      +...+. ..|||+++++  - ..+.++|.++
T Consensus       142 ~~~~~~~~lGi~fs~P~--~-q~~~~~G~l~  169 (917)
T 1cza_N          142 KIKDKKLPVGFTFSFPC--Q-QSKIDEAILI  169 (917)
T ss_dssp             TCTTSCCCEEEEECSCE--E-CSSTTCCEEC
T ss_pred             CCCCCcccEEEEEcccc--c-cCcCCceEEE
Confidence            332222 4466666543  1 1133457665

>3o8m_A Hexokinase; rnaseh-like fold, glycolysis, glucose repression binding, MIG1 binding, transferase; HET: GLC BGC; 1.42A {Kluyveromyces lactis} PDB: 3o1b_A 3o08_A* 3o1w_A* 3o5b_A* 3o4w_A 3o80_A* 3o6w_A* 1ig8_A 3b8a_X*

Probab=98.05  E-value=1e-05  Score=63.89  Aligned_cols=91  Identities=7%  Similarity=-0.052  Sum_probs=55.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcE-E--EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCC-CCCee
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEE-V--VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS-RDDIV   88 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~i-v--~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~-~~~I~   88 (129)
                      +.+|+||+|+|++|+++++. +|+- .  ...+.+++...     ...+.+++++.+.+++.+.+++.   +.. ..+..
T Consensus        80 G~~LalDlGGTn~Rv~~V~l-~g~~~~~~~~~~~~Ip~~~-----~~~~~~~lfd~Ia~~i~~fl~~~---~~~~~~~~l  150 (485)
T 3o8m_A           80 GDFLALDLGGTNLRVVLVKL-GGNHDFDTTQNKYRLPDHL-----RTGTSEQLWSFIAKCLKEFVDEW---YPDGVSEPL  150 (485)
T ss_dssp             EEEEEEEESSSEEEEEEEEE-ESSSCEEEEEEEEECCTTG-----GGSBHHHHHHHHHHHHHHHHHHH---CTTCCSSCE
T ss_pred             eEEEEEEecCCeEEEEEEEE-CCCCceEEEEEEEecCchh-----ccCCHHHHHHHHHHHHHHHHHHh---ccccccccc
Confidence            57899999999999999998 7761 1  12233332110     11236889999999999988762   221 13455


Q ss_pred             EEEEecCcceEEEEeCCCCcccccceeec
Q psy1582          89 TLGITNQRETTVVWDLNTGEPLYNAIEQG  117 (129)
Q Consensus        89 ~Igis~~~~g~v~~d~~~g~~~~~~i~w~  117 (129)
                      .+|++...    |++.. +.--...+.|.
T Consensus       151 ~lGftfSf----P~~q~-~i~~g~li~wt  174 (485)
T 3o8m_A          151 PLGFTFSY----PASQK-KINSGVLQRWT  174 (485)
T ss_dssp             EEEEEECS----CEECS-BTTCCEECCCC
T ss_pred             ceEEEEee----eEEEc-ccCCEEEeecc
Confidence            56666554    45553 32112334675

>1cza_N Hexokinase type I; structurally homologous domains, transferase; HET: GLC G6P ADP; 1.90A {Homo sapiens} SCOP: c.55.1.3 c.55.1.3 c.55.1.3 c.55.1.3 PDB: 1dgk_N* 1hkb_A* 1qha_A* 1hkc_A* 1bg3_A* 2nzt_A*

Probab=98.03  E-value=1.2e-05  Score=67.93  Aligned_cols=87  Identities=14%  Similarity=0.113  Sum_probs=56.1

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCC-Cc--EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCC
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALT-QE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHG   81 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~-g~--iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~   81 (129)
                      .|.+.. .+.+||||+|+|++|+++++. + |+  ++...+..+....+   ....+.+++++.+.+++.+.+++   .+
T Consensus       519 ~P~G~E-~G~~lalDlGGTn~Rv~~V~l-~~g~~~~~~~~~~~~~ip~~---~~~~~~~~lfd~Ia~~i~~~l~~---~~  590 (917)
T 1cza_N          519 TPDGTE-NGDFLALDLGGTNFRVLLVKI-RSGKKRTVEMHNKIYAIPIE---IMQGTGEELFDHIVSCISDFLDY---MG  590 (917)
T ss_dssp             CCCSCC-CEEEEEEEESSSSEEEEEEEE-ECSTTCEEEEEEEEECCCHH---HHTSBHHHHHHHHHHHHHHHHHH---HT
T ss_pred             CCCCCc-ceEEEEEEECCCcEEEEEEEe-CCCcceeEEeeeeEEecCcc---cccCCHHHHHHHHHHHHHHHHHH---cC
Confidence            355543 356799999999999999998 5 54  55433333322110   00124688999999999999876   34


Q ss_pred             CCCCCeeEEEEecCcceEEEEeC
Q psy1582          82 LSRDDIVTLGITNQRETTVVWDL  104 (129)
Q Consensus        82 ~~~~~I~~Igis~~~~g~v~~d~  104 (129)
                      .....+ .+|++.+.    |++.
T Consensus       591 ~~~~~l-~lG~tfsf----Pv~q  608 (917)
T 1cza_N          591 IKGPRM-PLGFTFSF----PCQQ  608 (917)
T ss_dssp             CCSSCC-EEEEEECS----CEEE
T ss_pred             CCccce-eEEEEeec----cccc
Confidence            443444 67777665    5664

>3zyy_X Iron-sulfur cluster binding protein; iron-sulfur-binding protein, ashka family, ATPase; 2.20A {Carboxydothermus hydrogenoformans}

Probab=97.65  E-value=0.00017  Score=58.59  Aligned_cols=83  Identities=12%  Similarity=0.172  Sum_probs=56.7

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCe------EEEC---HHHHHHHHHHHHHHHHHHHH-hCC
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGW------AEQD---PMEILQAVQTTMDRAIEKLS-AHG   81 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~------~~~~---~~~~~~~i~~~~~~~~~~~~-~~~   81 (129)
                      ..|-++||||||++.+.++|..+|++++..+.-.+........      +..+   .+.+-+.+.+.+++++.++- +++
T Consensus       205 ~~~GlAvDiGTTtv~~~LvdL~tG~~l~~~~~~NpQ~~~G~DVisRI~~a~~~~~g~~~L~~~v~~~in~li~~l~~~~~  284 (631)
T 3zyy_X          205 RVFGLAIDIGTTTVVVQLVDLVSGKVLGTKGNYNKQAAFGDDVISRIIYVDENPDGAEKLRKAVLSTINELIFQLCKEHG  284 (631)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTTCCEEEEEEEECGGGGTCSSHHHHHHHHHHCTTHHHHHHHHHHHHHHHHHHHHHHHHT
T ss_pred             CceEEEEEecccceeEEEEECCCCCEEEeecccCCCCCcchHHHHHHHHHhcCcccHHHHHHHHHHHHHHHHHHHHHHcC
Confidence            4688999999999999999988999999988777654332221      1111   22333345555555555432 258


Q ss_pred             CCCCCeeEEEEec
Q psy1582          82 LSRDDIVTLGITN   94 (129)
Q Consensus        82 ~~~~~I~~Igis~   94 (129)
                      +++++|..+.+++
T Consensus       285 i~~~~I~~~~v~G  297 (631)
T 3zyy_X          285 VEKKEIMAAVVAG  297 (631)
T ss_dssp             CCGGGEEEEEEEE
T ss_pred             CCHHHeeEEEEEc
Confidence            8899998888875

>3bex_A Type III pantothenate kinase; actin-like fold, ATP-binding, coenzyme A biosynthesis, cytoplasm, metal-binding, nucleotide-binding, potassium; HET: PAU; 1.51A {Thermotoga maritima} SCOP: c.55.1.13 c.55.1.13 PDB: 3bf1_A* 3bf3_A* 2gtd_A

Probab=97.63  E-value=6.5e-05  Score=54.48  Aligned_cols=65  Identities=9%  Similarity=0.083  Sum_probs=43.4

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      +.+|+||+|.|++|.++||.  ++++...+.+++.        ....+++...+.+.++.          ...+|.++.+
T Consensus         3 ~M~L~IDIGNT~ik~gl~~~--~~l~~~~r~~T~~--------~~t~de~~~~l~~l~~~----------~~~~i~~i~I   62 (249)
T 3bex_A            3 PMYLLVDVGNTHSVFSITED--GKTFRRWRLSTGV--------FQTEDELFSHLHPLLGD----------AMREIKGIGV   62 (249)
T ss_dssp             CEEEEEEECSSEEEEEEESS--SSSCEEEEEECCT--------TCCHHHHHHHHHHHHGG----------GGGGEEEEEE
T ss_pred             ceEEEEEECCCeEEEEEEEC--CEEEEEEEecCCC--------CCCHHHHHHHHHHHHhh----------ccccCCEEEE
Confidence            34799999999999999984  5777766665531        13456665555433322          1356889999


Q ss_pred             ecCcc
Q psy1582          93 TNQRE   97 (129)
Q Consensus        93 s~~~~   97 (129)
                      |+..+
T Consensus        63 sSVvp   67 (249)
T 3bex_A           63 ASVVP   67 (249)
T ss_dssp             EESCH
T ss_pred             EcCcH
Confidence            97653

>3h1q_A Ethanolamine utilization protein EUTJ; ethanolamine utilization EUTJ, structural genomics, PSI-2; HET: ATP; 2.80A {Carboxydothermus hydrogenoformans z-29organism_taxid}

Probab=97.57  E-value=0.001  Score=47.86  Aligned_cols=61  Identities=11%  Similarity=0.089  Sum_probs=40.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHH
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIE   75 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~   75 (129)
                      ..++++|||+|++++|++++|. +++++.....+....  ..| ...|.+.....+...++.+..
T Consensus        26 ~~~~~~gIDiGS~s~k~vi~~~-~~~~l~~~~~~~~~l--~~g-~i~d~~~~~~~l~~~~~~~~~   86 (272)
T 3h1q_A           26 PPPYKVGVDLGTADIVLVVTDQ-EGIPVAGALKWASVV--KDG-LVVDYIGAIQIVRELKAKVER   86 (272)
T ss_dssp             CSCCEEEEECCSSEEEEEEECT-TCCEEEEEEEECCCC--BTT-BCTTHHHHHHHHHHHHHHHHH
T ss_pred             CCCEEEEEEcccceEEEEEECC-CCcEEEEEeeccccc--CCC-EEEcHHHHHHHHHHHHHHHHH
Confidence            4578999999999999999998 889988776654311  223 223545555555554444433

>2h3g_X Biosynthetic protein; pantothenate kinase, anthrax, type III pantothenate kinase, COAX, COAA, askha; 2.00A {Bacillus anthracis str}

Probab=97.46  E-value=0.00034  Score=51.23  Aligned_cols=66  Identities=15%  Similarity=0.100  Sum_probs=45.2

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|.||+|.|++|.++|+.  ++++...+.+++.        ....+++...+    ++++..   .++++.+|.++.+|+
T Consensus         2 lL~IDIGNT~ik~gl~~~--~~l~~~~r~~T~~--------~~t~de~~~~l----~~ll~~---~~~~~~~i~~iiISS   64 (268)
T 2h3g_X            2 IFVLDVGNTNAVLGVFEE--GELRQHWRMETDR--------HKTEDEYGMLV----KQLLEH---EGLSFEDVKGIIVSS   64 (268)
T ss_dssp             EEEEEECSSEEEEEEEET--TEEEEEEEEECCT--------TCCHHHHHHHH----HHHHHH---TTCCGGGCCEEEEEE
T ss_pred             EEEEEECcCcEEEEEEEC--CEEEEEEEecCCC--------cCCHHHHHHHH----HHHHHH---cCCCcccCcEEEEEc
Confidence            589999999999999994  6777766655431        12345554444    445544   466667889999998


Q ss_pred             Ccc
Q psy1582          95 QRE   97 (129)
Q Consensus        95 ~~~   97 (129)
                      ..+
T Consensus        65 Vvp   67 (268)
T 2h3g_X           65 VVP   67 (268)
T ss_dssp             SCH
T ss_pred             cCh
Confidence            653

>4a2a_A Cell division protein FTSA, putative; cell cycle, actin, divisome; HET: ATP; 1.80A {Thermotoga maritima} PDB: 1e4g_T* 1e4f_T* 4a2b_A*

Probab=97.21  E-value=0.003  Score=48.85  Aligned_cols=79  Identities=14%  Similarity=0.127  Sum_probs=47.6

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCC-CC-cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          11 PTQIRDRLSATYHTSRVLIISAL-TQ-EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~-~g-~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      ...+++|+||||+++|+++.... +| ++++....|...  -..|.+ .|.+...+.+.++++++=+.   +|...++=.
T Consensus         6 ~~~~ivglDIGts~I~~vv~~~~~~~~~i~g~~~~~s~g--v~~G~I-~di~~~~~~I~~av~~ae~~---~g~~i~~~v   79 (419)
T 4a2a_A            6 KTVFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG--LDEGEI-KDAIAFKESVNTLLKELEEQ---LQKSLRSDF   79 (419)
T ss_dssp             -CCEEEEEEECSSEEEEEEEEC----CEEEEEEEEECCS--EETTEE-SBHHHHHHHHHHHHHHHHHH---HTSCCCSEE
T ss_pred             cCCEEEEEEccCCEEEEEEEEEcCCCCEEEEEEEeccCC--eeCCEE-EcHHHHHHHHHHHHHHHHHH---cCCCcCceE
Confidence            35799999999999999999852 23 677666554321  123323 47777777777666665333   455444413


Q ss_pred             EEEEecC
Q psy1582          89 TLGITNQ   95 (129)
Q Consensus        89 ~Igis~~   95 (129)
                      .+++++.
T Consensus        80 ~v~i~g~   86 (419)
T 4a2a_A           80 VISFSSV   86 (419)
T ss_dssp             EEEECCT
T ss_pred             EEEEcCC
Confidence            4666654

>3hm8_A Hexokinase-3; glucose, glucose-6-phosphate, non-protein kinase, structural genomics consortium, SGC, A enzyme, ATP-binding, glycolysis; HET: GLC BG6; 2.80A {Homo sapiens}

Probab=97.07  E-value=0.0023  Score=50.05  Aligned_cols=65  Identities=12%  Similarity=0.097  Sum_probs=43.3

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCcEEEE-EEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~-~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .|.+... +.+|++|+|+|++|+++++. .|.+.-. ..++.+... ..    ...+++|+.+.+++.+.+++
T Consensus        52 ~P~G~E~-G~~LAlDlGGTn~RV~~V~l-~g~~~~~~~~~~ip~~~-~~----g~~~~LFd~Ia~~i~~fl~~  117 (445)
T 3hm8_A           52 TPDGSER-GDFLALDLGGTNFRVLLVRV-TTGVQITSEIYSIPETV-AQ----GSGQQLFDHIVDCIVDFQQK  117 (445)
T ss_dssp             SCCSCCC-EEEEEEEESSSSEEEEEEEE-SSSEEEEEEEECCCHHH-HT----SBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCcee-eEEEEEEecCCeEEEEEEEE-CCceEEEEEEeccCccc-cC----CCHHHHHHHHHHHHHHHHHH
Confidence            3555433 45799999999999999999 7763211 122332110 01    14578999999999998876

>3f9m_A Glucokinase; hexokinase IV, ATP-binding, diabetes mellitus, mutation, glycolysis, nucleotide-binding, transfera; HET: GLC MRK; 1.50A {Homo sapiens} PDB: 3fgu_A* 3id8_A* 3idh_A* 3vev_A* 3vf6_A* 3qic_A* 3s41_A* 4dhy_A* 4dch_A* 3vey_A* 1v4s_A* 3a0i_X* 3fr0_A* 3goi_A* 3imx_A* 3h1v_X* 1v4t_A*

Probab=97.02  E-value=0.00099  Score=52.44  Aligned_cols=60  Identities=13%  Similarity=0.127  Sum_probs=40.0

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcE-----EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEE-----VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~i-----v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      +.+|++|+|+|+.|++++.. .|.-     +...+..+++  |.. ......+++|+.|.+++.+.+++
T Consensus        77 G~fLAlDlGGTNfRV~~V~L-~g~~~~~~~~~~~~~~~~I--p~~-l~~gt~~eLFd~IA~~i~~fl~~  141 (470)
T 3f9m_A           77 GDFLSLDLGGTNFRVMLVKV-GEGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK  141 (470)
T ss_dssp             EEEEEEEESSSEEEEEEEEE-EC----CEEEEEEEEEEEC--CHH-HHSSBHHHHHHHHHHHHHHHHHH
T ss_pred             eEEEEEEecCceEEEEEEEE-CCCCCCcceEEEEEEeecC--ChH-hccCCHHHHHHHHHHHHHHHHhh
Confidence            46799999999999999998 5542     3323333321  110 01124688999999999999876

>2ivn_A O-sialoglycoprotein endopeptidase; UP1 keops complex, Fe/Zn dependent nucleotide phosphatase, metalloprotease, hypothetical protein, zinc; HET: ANP; 1.65A {Pyrococcus abyssi} PDB: 2ivo_A 2ivp_A*

Probab=96.67  E-value=0.0065  Score=45.45  Aligned_cols=74  Identities=19%  Similarity=0.286  Sum_probs=50.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHH----HHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPME----ILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~----~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      ++||||.++..++++|++.  |+++.....++.  .+..|+   .|+.    -.+.+...+++++++   +++++++|.+
T Consensus         2 ~iLgIdts~~~~~val~~~--g~i~~~~~~~~~--~~~gg~---~p~~~~~~h~~~l~~~i~~~L~~---agi~~~did~   71 (330)
T 2ivn_A            2 LALGIEGTAHTLGIGIVSE--DKVLANVFDTLT--TEKGGI---HPKEAAEHHARLMKPLLRKALSE---AGVSLDDIDV   71 (330)
T ss_dssp             CEEEEECSSSEEEEEEECS--SCEEEEEEEECC--CTTCCC---CHHHHHHHHHHHHHHHHHHHHHH---HTCCTTTCCE
T ss_pred             EEEEEEccCCCeEEEEEEC--CEEEEEEEEEee--cccCCc---CchhhHHHHHHHHHHHHHHHHHH---cCCCHHHCcE
Confidence            6899999999999999985  578866554432  222342   2432    334555667777776   6888999999


Q ss_pred             EEEecCcce
Q psy1582          90 LGITNQRET   98 (129)
Q Consensus        90 Igis~~~~g   98 (129)
                      |+++. ++|
T Consensus        72 Ia~~~-GPG   79 (330)
T 2ivn_A           72 IAFSQ-GPG   79 (330)
T ss_dssp             EEEEE-ESS
T ss_pred             EEEEC-CCC
Confidence            98763 444

>2ych_A Competence protein PILM; cell cycle, type IV pilus actin secretion; HET: ATP; 2.20A {Thermus thermophilus}

Probab=96.42  E-value=0.0093  Score=44.78  Aligned_cols=58  Identities=12%  Similarity=0.025  Sum_probs=35.3

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHH
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR   72 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~   72 (129)
                      ...++||||||+++|++++..  |+  +......+++...-..|. -.|++.+...+.+++++
T Consensus        12 ~~~~vgiDiGt~~i~~~~~~~--~~~~i~~~g~~~~ps~~~~~g~-i~d~~~~~~~ik~~~~~   71 (377)
T 2ych_A           12 RVEALGLEIGASALKLVEVSG--NPPALKALASRPTPPGLLMEGM-VAEPAALAQEIKELLLE   71 (377)
T ss_dssp             CCCCEEEEECSSEEEEEEEET--TTTEEEEEEEEECCTTSEETTE-ESCHHHHHHHHHHHHHH
T ss_pred             CCceEEEEeCCCeEEEEEEeC--CceEEEEEEeEECCCCcccCCC-cCCHHHHHHHHHHHHHH
Confidence            456899999999999999963  44  444445544421112232 34777666666555443

>3eno_A Putative O-sialoglycoprotein endopeptidase; hydrolase, metal-binding, metalloprotease, protease, zinc, keops complex, ATPase, metal ION binding; 3.02A {Thermoplasma acidophilum}

Probab=95.88  E-value=0.027  Score=42.22  Aligned_cols=81  Identities=23%  Similarity=0.207  Sum_probs=54.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEEC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQD-PMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      ..+++||||-.+..+.++|++.  ++++......+.  .+..|.+... ...-.+.+...+++++++   +++++++|.+
T Consensus         4 ~~M~iLgIdts~~~~svAl~~~--~~i~~~~~~~~~--~~~gGv~p~~a~~~H~~~l~~~i~~~L~~---ag~~~~did~   76 (334)
T 3eno_A            4 DPMIVLGLEGTAHTISCGIIDE--SRILAMESSMYR--PKTGGIRPLDAAVHHSEVIDTVISRALEK---AKISIHDIDL   76 (334)
T ss_dssp             CCCEEEEEECSSSEEEEEEEES--SCCCEEEEEECC--CSSCSCCHHHHHHHHHHHHHHHHHHHHHH---HTCCGGGCCE
T ss_pred             cCceEEEEECCCcCeEEEEEEC--CEEEEEEEEeec--cccCCcCcchHHHHHHHHHHHHHHHHHHH---cCCCHHHCCE
Confidence            3568999999999999999995  577776544332  1223322110 122334566777788877   7899999999


Q ss_pred             EEEecCcceE
Q psy1582          90 LGITNQRETT   99 (129)
Q Consensus        90 Igis~~~~g~   99 (129)
                      |+++. +||.
T Consensus        77 Iav~~-gPG~   85 (334)
T 3eno_A           77 IGFSM-GPGL   85 (334)
T ss_dssp             EEEEC-SSSC
T ss_pred             EEEEc-CCCC
Confidence            99885 5553

>3t69_A Putative 2-dehydro-3-deoxygalactonokinase; structural genomics, PSI-biology, NEW YORK structural genomi research consortium, nysgrc; 2.55A {Sinorhizobium meliloti}

Probab=95.66  E-value=0.013  Score=44.10  Aligned_cols=34  Identities=9%  Similarity=0.002  Sum_probs=27.6

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      ++.++|+||-|||++|+.++|. +|+++.+.+.+.
T Consensus         5 ~~~~~IavDWGTSnlRa~l~~~-~g~vl~~~~~~~   38 (330)
T 3t69_A            5 TAGYYAAVDWGTSSFRLWIIGE-DGAVLAERRSAE   38 (330)
T ss_dssp             ---CEEEEEECSSCEEEEEECT-TSCEEEEEEESC
T ss_pred             CCCCEEEEEecchheehheecC-CCCchhhhcCCc
Confidence            4568899999999999999998 899998776544

>3cet_A Conserved archaeal protein; Q6M145, MRR63, NESG, XRAY, structure, structural genomics, PSI-2, protein structure initiative; 1.80A {Methanococcus maripaludis S2} PDB: 3c0b_A

Probab=95.36  E-value=0.012  Score=44.26  Aligned_cols=30  Identities=7%  Similarity=-0.005  Sum_probs=21.0

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDIS   46 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~   46 (129)
                      +||+|||+-++|+++++. +|++ ...+.++|
T Consensus         2 iiG~DIGGAn~K~a~~~~-~g~~-~~~~~~~P   31 (334)
T 3cet_A            2 ILGIDIGGANTKITELHE-NGEF-KVHHLYFP   31 (334)
T ss_dssp             EEEEEEC--CEEEEEECS-TTCC-EEEEC---
T ss_pred             eeEEEecccceeeeeecC-CCce-EEEEEecC
Confidence            799999999999999998 7887 54455444

>3r6m_A YEAZ, resuscitation promoting factor; actin/HSP70 nucleotide-binding fold, bacterial resuscitation BUT non-culturable state, Y YJEE; 3.10A {Vibrio parahaemolyticus}

Probab=95.17  E-value=0.14  Score=36.08  Aligned_cols=65  Identities=12%  Similarity=0.208  Sum_probs=45.4

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .+|+||-.+..+.++|++.  |+++..... ..          ...   .+.+...+++++++   +++++.+|.+|.++
T Consensus         3 ~iLaIdTS~~~~svAl~~~--~~~~~~~~~-~~----------~~H---s~~L~p~i~~~L~~---a~~~~~dld~Iav~   63 (213)
T 3r6m_A            3 KILAIDTATENCSVALLVN--DQVISRSEV-AP----------RDH---TKKVLPMVDEVLKE---AGLTLQDLDALAFG   63 (213)
T ss_dssp             CEEEEECSSSEEEEEEESS--SCEEEEEEE-CC----------SCC---HHHHHHHHHHHHHT---TTCCTTTCSEEEEE
T ss_pred             EEEEEEccCcceEEEEEEC--CEEEEEEEe-ch----------HHH---HHHHHHHHHHHHHH---cCCCHHHccEEEEe
Confidence            5899999999999999984  777765321 10          111   23455566777776   78888999999888


Q ss_pred             cCcce
Q psy1582          94 NQRET   98 (129)
Q Consensus        94 ~~~~g   98 (129)
                      . |||
T Consensus        64 ~-GPG   67 (213)
T 3r6m_A           64 R-GPG   67 (213)
T ss_dssp             E-ESS
T ss_pred             c-CCC
Confidence            5 454

>1nbw_A Glycerol dehydratase reactivase alpha subunit; molecular chaperone, actin-like ATPase domain, beta/BETA/alpha swiveling domain, hydrolase; 2.40A {Klebsiella pneumoniae} SCOP: c.8.6.1 c.55.1.6 c.55.1.6

Probab=94.73  E-value=0.067  Score=43.06  Aligned_cols=64  Identities=17%  Similarity=0.214  Sum_probs=39.0

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCC
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDD   86 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~   86 (129)
                      ++|++|||||++++.+++-+..+|  ++++....++.-.   -| ..++.    ..+.+++++++++   ++...++
T Consensus         1 m~~i~GiDIGnsttev~l~~~~~g~i~~l~~g~~~ttGi---KG-t~~Ni----~g~~~si~~a~~~---a~~~~~d   66 (607)
T 1nbw_A            1 MPLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM---KG-TRDNI----AGTLAALEQALAK---TPWSMSD   66 (607)
T ss_dssp             -CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS---TT-SGGGH----HHHHHHHHHHHTT---SSCCGGG
T ss_pred             CcEEEEEEecCceEEEEEEEEcCCeEEEEEeecccCCcc---ce-eeeCH----HHHHHHHHHHHHH---hCCcccC
Confidence            368999999999999998776335  5577776665321   11 11233    3455566666655   5554333

>2f9w_A Pantothenate kinase; COAA, transferase; HET: PAU; 1.90A {Pseudomonas aeruginosa} SCOP: c.55.1.13 c.55.1.13 PDB: 2f9t_A*

Probab=94.69  E-value=0.047  Score=39.93  Aligned_cols=32  Identities=9%  Similarity=0.008  Sum_probs=24.3

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      |...+|.||+|.|++|.++|+. +++++...+.
T Consensus        21 ~~~M~L~IDiGNT~ik~g~~~~-~~~~~~~~r~   52 (271)
T 2f9w_A           21 MASMILELDCGNSLIKWRVIEG-AARSVAGGLA   52 (271)
T ss_dssp             --CEEEEEEECSSCEEEEEEET-TTEEEEEEEE
T ss_pred             ccCcEEEEEeCCCeeEEEEEeC-CCEEEEEEEe
Confidence            4456799999999999999995 4677765554

>2ews_A Pantothenate kinase; PANK, structural genomics, structural genomics consortium, S transferase; HET: ANP; 2.05A {Staphylococcus aureus subsp} SCOP: c.55.1.14

Probab=94.45  E-value=0.037  Score=40.82  Aligned_cols=27  Identities=4%  Similarity=0.094  Sum_probs=21.7

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      ..+.+|||+|+|.+|+++++  +++++..
T Consensus        19 ~~~~iGIDiGsTt~K~V~~~--~~~i~~~   45 (287)
T 2ews_A           19 SHMKVGIDAGGTLIKIVQEQ--DNQRTFK   45 (287)
T ss_dssp             --CEEEEEECSSEEEEEEEC--SSCEEEE
T ss_pred             CCeEEEEEEChhhEEEEEEc--CCEEEEE
Confidence            35789999999999999995  5777755

>2gel_A Putative GRAM negative resuscitation promoting FA; YEAZ, RPF, actin-like-fold, glycoprotease, chaperone; 2.05A {Salmonella typhimurium} PDB: 2gem_A 1okj_A

Probab=94.43  E-value=0.33  Score=34.37  Aligned_cols=65  Identities=9%  Similarity=0.091  Sum_probs=44.8

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++|+||-.+..+.++|++.  |+++..... ..          ...   .+.+...+++++++   +++++.+|.+|+++
T Consensus         2 ~iL~idTs~~~~sval~~~--~~~~~~~~~-~~----------~~h---~~~l~~~i~~~L~~---a~~~~~did~Iav~   62 (231)
T 2gel_A            2 RILAIDTATEACSVALWNN--GTINAHFEL-CP----------REH---TQRILPMVQEILAA---SGASLNEIDALAFG   62 (231)
T ss_dssp             EEEEEECSSSEEEEEEEET--TEEEEEEEE-CC----------SCC---HHHHHHHHHHHHHH---TTCCGGGCSEEEEE
T ss_pred             eEEEEECCCcCeEEEEEEC--CEEEEEEhh-hh----------HHH---HHHHHHHHHHHHHH---cCCCHHHCCEEEEE
Confidence            5899999999999999984  666642211 10          111   23456667777776   78889999999987


Q ss_pred             cCcce
Q psy1582          94 NQRET   98 (129)
Q Consensus        94 ~~~~g   98 (129)
                      . |||
T Consensus        63 ~-GPG   66 (231)
T 2gel_A           63 R-GPG   66 (231)
T ss_dssp             C-CSS
T ss_pred             c-CCC
Confidence            5 444

>4gni_A Putative heat shock protein; HSP70-type ATPase, ATP binding protein, magnesium binding, C translational chaperone; HET: ATP; 1.80A {Chaetomium thermophilum var}

Probab=94.18  E-value=0.027  Score=42.76  Aligned_cols=22  Identities=5%  Similarity=-0.053  Sum_probs=17.5

Q ss_pred             CCCCeEEEEeCCCCceeEEEEe
Q psy1582          10 APTQIRDRLSATYHTSRVLIIS   31 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d   31 (129)
                      .|.++++|||+|||+++++++.
T Consensus        10 ~m~~~vvGIDlGTt~s~va~~~   31 (409)
T 4gni_A           10 PGERVVIGITFGNSNSSIAHTV   31 (409)
T ss_dssp             ---CCEEEEEECSSEEEEEEEE
T ss_pred             CCCCcEEEEEcCCCeEEEEEEe
Confidence            3457899999999999999884

>1u6z_A Exopolyphosphatase; alpha/beta protein, askha (acetate and sugar kinases, HSC70, superfamily; 1.90A {Escherichia coli} SCOP: a.211.1.5 c.55.1.8 c.55.1.8 PDB: 2flo_A*

Probab=93.94  E-value=0.14  Score=40.61  Aligned_cols=80  Identities=10%  Similarity=0.092  Sum_probs=47.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      ...+.+||||+.++|..|++..++  +++...+.+...-  ....|  .-+++ .+++..++++...+.+  .+....+|
T Consensus        10 ~~~~AaIDiGSNSirL~I~~~~~~~~~~l~~~k~~vrLg~g~~~~g--~Ls~e-ai~r~~~~L~~f~~~~--~~~~v~~v   84 (513)
T 1u6z_A           10 PQEFAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDN--MLSEE-AMTRGLNCLSLFAERL--QGFSPASV   84 (513)
T ss_dssp             --CEEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTC--CBCHH-HHHHHHHHHHHHHHHT--TTCCGGGE
T ss_pred             CCeEEEEEeccccEEEEEEEEcCCeeEEEEeeEEEEeccCcccccC--CcCHH-HHHHHHHHHHHHHHHH--HhCCCCEE
Confidence            456899999999999999997333  3344444443321  11223  23344 3556667777766553  24445678


Q ss_pred             eEEEEecCc
Q psy1582          88 VTLGITNQR   96 (129)
Q Consensus        88 ~~Igis~~~   96 (129)
                      .+++.+..+
T Consensus        85 ~~vATsA~R   93 (513)
T 1u6z_A           85 CIVGTHTLR   93 (513)
T ss_dssp             EEEECHHHH
T ss_pred             EEEecHHHH
Confidence            888877654

>2a6a_A Hypothetical protein TM0874; glycoprotein endopeptidase, structural genomics, JOI for structural genomics, JCSG; 2.50A {Thermotoga maritima} SCOP: c.55.1.9 c.55.1.9

Probab=93.57  E-value=0.2  Score=35.32  Aligned_cols=66  Identities=9%  Similarity=0.082  Sum_probs=45.0

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      ..+|+||-.+..+.++|++.  ++++ +.....             ...-.+.+...+++++++   +++++.+|.+|++
T Consensus        12 ~~iLaidTS~~~~sval~~~--~~~l-~~~~~~-------------~r~Hse~L~p~i~~~L~~---a~~~~~dld~Iav   72 (218)
T 2a6a_A           12 HMNVLALDTSQRIRIGLRKG--EDLF-EISYTG-------------EKKHAEILPVVVKKLLDE---LDLKVKDLDVVGV   72 (218)
T ss_dssp             -CEEEEEECSSSEEEEEEET--TEEE-EEEEES-------------CGGGGGHHHHHHHHHHHH---HTCCGGGCSEEEE
T ss_pred             ceEEEEEcCCcCeEEEEEEC--CEEE-EEEecc-------------hHHHHHHHHHHHHHHHHH---cCCCHHHCCEEEE
Confidence            46899999999999999984  5676 322211             111123455566677766   6888889999988


Q ss_pred             ecCcce
Q psy1582          93 TNQRET   98 (129)
Q Consensus        93 s~~~~g   98 (129)
                      +. |||
T Consensus        73 ~~-GPG   77 (218)
T 2a6a_A           73 GI-GPG   77 (218)
T ss_dssp             EC-CSS
T ss_pred             Ec-CCC
Confidence            85 454

>3mdq_A Exopolyphosphatase; structural genomics, joint center for ST genomics, JCSG, protein structure initiative, PSI-2, hydrol; HET: MSE; 1.50A {Cytophaga hutchinsonii}

Probab=93.49  E-value=0.15  Score=37.85  Aligned_cols=80  Identities=14%  Similarity=0.145  Sum_probs=46.4

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCc--EEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQE--EVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDI   87 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I   87 (129)
                      .+.+.+||+|+.++|..+++...+.  ++.+.+.+..+-.  ...|  .-+++. +++..+++++..+.+++.+  ..++
T Consensus         3 ~~~~A~IDiGSNsirL~I~~~~~~~~~~i~~~k~~vrLg~g~~~~g--~ls~ea-i~r~~~~L~~f~~~~~~~~--v~~v   77 (315)
T 3mdq_A            3 SQRIGVIDMGTNTFHLLITDIVNDRPHTLVNEKSAVGLGKGGITKG--FITEEA-MDRALDTLKKFRVILDEHA--VVHV   77 (315)
T ss_dssp             -CEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCSSTTTGGGT--CCCHHH-HHHHHHHHHHHHHHHHHTT--CCEE
T ss_pred             CceEEEEEecCCcEEEEEEEEcCCceEEeeeceeeeeccccccccC--CcCHHH-HHHHHHHHHHHHHHHHHcC--CCEE
Confidence            4568999999999999999973343  3344444333211  1122  123443 4566667766655443334  3678


Q ss_pred             eEEEEecCc
Q psy1582          88 VTLGITNQR   96 (129)
Q Consensus        88 ~~Igis~~~   96 (129)
                      .+++.+..+
T Consensus        78 ~~vATsA~R   86 (315)
T 3mdq_A           78 IATGTSAVR   86 (315)
T ss_dssp             EEEECHHHH
T ss_pred             EEEeeHHHH
Confidence            888777654

>3en9_A Glycoprotease, O-sialoglycoprotein endopeptidase/protein kinase; endopeptidase activity, protein kinase activity; HET: TBR; 2.67A {Methanocaldococcus jannaschii} PDB: 3enh_A* 2vwb_A*

Probab=93.44  E-value=0.45  Score=37.61  Aligned_cols=80  Identities=14%  Similarity=0.211  Sum_probs=51.9

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEEC-HHHHHHHHHHHHHHHHHHHHhCCCCCCCeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQD-PMEILQAVQTTMDRAIEKLSAHGLSRDDIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~-~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~   89 (129)
                      +.+++||||-.+..+.++|++. +++++........  .+..|.+... ...-.+.+...+++++++     +++.+|.+
T Consensus         4 ~~m~iL~i~ts~~~~~~al~~~-~~~~~~~~~~~~~--~~~gg~~p~~a~~~h~~~l~~~i~~~l~~-----~~~~~id~   75 (540)
T 3en9_A            4 DPMICLGLEGTAEKTGVGIVTS-DGEVLFNKTIMYK--PPKQGINPREAADHHAETFPKLIKEAFEV-----VDKNEIDL   75 (540)
T ss_dssp             CSCEEEEEECSSSEEEEEEEET-TSCEEEEEEEECC--CCCSSSSCCCHHHHHHHHHHHHHHHHHHH-----SCGGGCCE
T ss_pred             ccceEEEEEcCccceEEEEEEC-CCeEEEEEEEeec--CCCCCCChHHHHHHHHHHHHHHHHHHHHh-----CCHhHCcE
Confidence            3468999999999999999997 6788877655432  2223432222 233344566666666653     45678888


Q ss_pred             EEEecCcceE
Q psy1582          90 LGITNQRETT   99 (129)
Q Consensus        90 Igis~~~~g~   99 (129)
                      |+++. +||+
T Consensus        76 ia~~~-gPG~   84 (540)
T 3en9_A           76 IAFSQ-GPGL   84 (540)
T ss_dssp             EEEEE-ESSC
T ss_pred             EEEec-CCCc
Confidence            88875 5553

>3sk3_A Acetate kinase, acetokinase; actin-like ATPase domain, askha superfamily of phosphotransf acetokinase, ATP binding, phosphotransferase; HET: CIT; 1.90A {Salmonella enterica subsp} PDB: 3slc_A

Probab=92.46  E-value=0.25  Score=38.25  Aligned_cols=34  Identities=18%  Similarity=0.177  Sum_probs=26.2

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      |..+++|.|..|+||+|+.|||..+++++.+...
T Consensus        16 Ms~klILviN~GSSS~K~~lf~~~~~~~l~~G~~   49 (415)
T 3sk3_A           16 MSSKLVLVLNCGSSSLKFAIIDAVNGDEYLSGLA   49 (415)
T ss_dssp             --CCEEEEEEECSSCEEEEEEETTTCCEEEEEEE
T ss_pred             CCCCeEEEEeCchHhhhheeEECCCCCEEEEeeE
Confidence            4457899999999999999999646777765543

>2d0o_A DIOL dehydratase-reactivating factor large subunit; chaperone; HET: ADP; 2.00A {Klebsiella oxytoca} SCOP: c.8.6.1 c.55.1.6 c.55.1.6 PDB: 2d0p_A

Probab=92.33  E-value=0.45  Score=38.35  Aligned_cols=68  Identities=12%  Similarity=0.117  Sum_probs=39.6

Q ss_pred             CCeEEEEeCCCCceeEEEEeCC-CCc--EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          12 TQIRDRLSATYHTSRVLIISAL-TQE--EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~-~g~--iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      ++|++|||||.+++.+++-+.. +|+  .+.+...++.-.   -|    ..+ -..-+..++++++++   ++.+.+++.
T Consensus         1 m~~i~gvdign~tte~~la~~~~~~~~~f~~s~~~~ttg~---kg----t~~-n~~g~~~~l~~~~~~---~~~~~~~~~   69 (610)
T 2d0o_A            1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETTGI---KG----TLR-NVFGIQEALALVARG---AGIAVSDIS   69 (610)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECCSS---TT----STT-HHHHHHHHHHHHHHH---HTCCGGGEE
T ss_pred             CcEEEEEecCCcchheeeeeecCCCceEEeeccccccCCc---cC----cHH-HHHHHHHHHHHHHHH---cCCChhhce
Confidence            3689999999999999886642 253  344444444211   11    111 233455566666665   576666655


Q ss_pred             EE
Q psy1582          89 TL   90 (129)
Q Consensus        89 ~I   90 (129)
                      -|
T Consensus        70 li   71 (610)
T 2d0o_A           70 LI   71 (610)
T ss_dssp             EE
T ss_pred             ee
Confidence            43

>4ijn_A Acetate kinase, acetokinase; proprionate kinase, ATP-dependent, metabolic intermediate biosynthesis, acetyl-COA biosynthesis, hydrolysis; HET: AMP; 1.70A {Mycobacterium smegmatis}

Probab=92.02  E-value=0.7  Score=35.57  Aligned_cols=32  Identities=3%  Similarity=-0.032  Sum_probs=24.9

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      +..+|.|..|+||+|+.|||.++.+++.+...
T Consensus        22 m~~ILviN~GSSS~K~~l~~~~~~~~l~~g~~   53 (398)
T 4ijn_A           22 MVTVLVVNSGSSSLKYAVVRPASGEFLADGII   53 (398)
T ss_dssp             CCEEEEEEECSSCEEEEEECTTTCCEEEEEEE
T ss_pred             cccEEEEeCCchhheEEEEECCCCceeeeeee
Confidence            45689999999999999999744456666543

>3bzc_A TEX; helix-turn-helix, helix-hairpin-helix, S1 domain, YQGF domain, transcription, RNA binding protein; 2.27A {Pseudomonas aeruginosa} SCOP: a.60.2.6 a.60.2.6 a.294.1.1 b.40.4.5 c.55.3.13 PDB: 3bzk_A 2oce_A

Probab=91.80  E-value=0.55  Score=39.19  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=27.2

Q ss_pred             CCeEEEEeCC-CCceeEEEEeCCCCcEEEEEEe
Q psy1582          12 TQIRDRLSAT-YHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        12 ~~~~lgiDiG-tt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      ...++|+|=| .|.+|++++|. +|+++.....
T Consensus       328 ~~~vlg~dpg~r~g~k~a~vd~-~G~~l~~~~i  359 (785)
T 3bzc_A          328 PRATLGLDPGLRTGVKVAVVDA-TGKLLDTATV  359 (785)
T ss_dssp             SCCEEEEECCSSSCEEEEEECT-TSCEEEEEEE
T ss_pred             CCeEEEECCCCcCceEEEEECC-CCCEEEEEEE
Confidence            4579999999 69999999999 9999987664

>3cer_A Possible exopolyphosphatase-like protein; NESG, BLR13, Q8G5J2, X-RAY, structure, structural genomics, PSI-2; 2.40A {Bifidobacterium longum NCC2705}

Probab=91.79  E-value=0.49  Score=35.50  Aligned_cols=79  Identities=9%  Similarity=-0.034  Sum_probs=45.8

Q ss_pred             CCeEEEEeCCCCceeEEEEeCC-CCc--EEEEEEeeeccccCCCCeE---EECHHHHHHHHHHHHHHHHHHHHhCCCCCC
Q psy1582          12 TQIRDRLSATYHTSRVLIISAL-TQE--EVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRD   85 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~-~g~--iv~~~~~~~~~~~~~~g~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~   85 (129)
                      ...+.+||+|+.++|..|++.. +|.  ++...+.+..+   ..|..   ..+++ -+++..+++++..+.++  .....
T Consensus        15 ~~~~A~IDiGSNsiRL~I~~~~~~~~~~~i~~~k~~vrL---g~g~~~~g~ls~e-ai~r~~~aL~~f~~~~~--~~~v~   88 (343)
T 3cer_A           15 SVTVAGIDCGTNSIRLKIARVDADGMHEVVPRILRVIRL---GQDVDKTHRFADE-ALERAYVAAREFAGVIA--EHPID   88 (343)
T ss_dssp             CEEEEEEEECSSCEEEEEEEEETTEEEEEEEEEEECCCT---TTTHHHHSSCCHH-HHHHHHHHHHHHHHHHT--TSCCS
T ss_pred             CCeEEEEEcccceeEeEEEEEcCCCCEEEEEEEEEEeeC---CCCccccCCcCHH-HHHHHHHHHHHHHHHHH--HCCCC
Confidence            3568999999999999999972 232  23333333321   11110   12333 45566677777665543  33345


Q ss_pred             CeeEEEEecCc
Q psy1582          86 DIVTLGITNQR   96 (129)
Q Consensus        86 ~I~~Igis~~~   96 (129)
                      ++.+++.+..+
T Consensus        89 ~v~~vATsA~R   99 (343)
T 3cer_A           89 GLRFVATSATR   99 (343)
T ss_dssp             EEEEEECHHHH
T ss_pred             eEEEEecHHHH
Confidence            68877777654

>1yuw_A Heat shock cognate 71 kDa protein; chaperone; 2.60A {Bos taurus} SCOP: b.130.1.1 c.55.1.1 c.55.1.1 PDB: 3c7n_B* 2v7z_A*

Probab=91.68  E-value=0.092  Score=41.82  Aligned_cols=22  Identities=9%  Similarity=-0.121  Sum_probs=18.6

Q ss_pred             CCCeEEEEeCCCCceeEEEEeC
Q psy1582          11 PTQIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ++..++|||+|||++.+++++.
T Consensus         2 ~m~~~iGIDlGTt~s~va~~~~   23 (554)
T 1yuw_A            2 SKGPAVGIDLGTTYSCVGVFQH   23 (554)
T ss_dssp             CSCCCEEEEECSSEEEEEEECS
T ss_pred             CCCCEEEEEeCcccEEEEEEEC
Confidence            3456899999999999999864

>1t6c_A Exopolyphosphatase; alpha/beta protein, actin-like fold, hydrolase; 1.53A {Aquifex aeolicus} SCOP: c.55.1.8 c.55.1.8 PDB: 1t6d_A 2j4r_A*

Probab=91.55  E-value=0.44  Score=35.33  Aligned_cols=77  Identities=5%  Similarity=-0.018  Sum_probs=43.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccccCCCCeE---EECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          14 IRDRLSATYHTSRVLIISALTQE--EVVSHSMDISTISPQEGWA---EQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~~~~~g~~---~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      .+.+||+|++++|..|++..++.  ++...+.+...   ..|..   ..+++ -.+...+++++..+.+++.+  ..++.
T Consensus        13 ~~a~IDiGSns~rl~I~~~~~~~~~~i~~~k~~vrL---g~g~~~~g~ls~e-ai~r~~~~L~~f~~~~~~~~--v~~i~   86 (315)
T 1t6c_A           13 RVASIDIGSYSVRLTIAQIKDGKLSIILERGRITSL---GTKVKETGRLQED-RIEETIQVLKEYKKLIDEFK--VERVK   86 (315)
T ss_dssp             EEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCT---TTTHHHHSSCCHH-HHHHHHHHHHHHHHHHHHTT--CSEEE
T ss_pred             EEEEEEECcCcEEEEEEEEcCCcEEEEeeeeEEeec---CCCccccCCcCHH-HHHHHHHHHHHHHHHHHHCC--CCeEE
Confidence            57899999999999999973342  33333433321   11110   12333 34556666666655443333  35678


Q ss_pred             EEEEecCc
Q psy1582          89 TLGITNQR   96 (129)
Q Consensus        89 ~Igis~~~   96 (129)
                      +++.+..+
T Consensus        87 ~vATsA~R   94 (315)
T 1t6c_A           87 AVATEAIR   94 (315)
T ss_dssp             EEECHHHH
T ss_pred             EEEcHHHH
Confidence            77766544

>1vhx_A Putative holliday junction resolvase; structural genomics, hydrolase; 1.96A {Bacillus subtilis} SCOP: c.55.3.8

Probab=91.47  E-value=0.15  Score=33.91  Aligned_cols=25  Identities=12%  Similarity=-0.173  Sum_probs=21.8

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVV   39 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~   39 (129)
                      .+||||.|+..+..++.|. .|.+..
T Consensus         4 riLGiDpG~~riGvAv~d~-~g~~a~   28 (150)
T 1vhx_A            4 RILGLDLGTKTLGVALSDE-MGWTAQ   28 (150)
T ss_dssp             EEEEEEECSSEEEEEEECT-TSSSEE
T ss_pred             EEEEEEccCCEEEEEEEEC-CCCEEe
Confidence            5899999999999999998 776543

>4ep4_A Crossover junction endodeoxyribonuclease RUVC; resolvase, hydrolase; 1.28A {Thermus thermophilus} PDB: 4ep5_A

Probab=90.44  E-value=1.4  Score=29.79  Aligned_cols=54  Identities=4%  Similarity=0.075  Sum_probs=35.0

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCc------EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          14 IRDRLSATYHTSRVLIISALTQE------EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~------iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .+||||-|++.+=.++++. +|+      .+......++     ++   .+..+=+..+.+.+.+++++
T Consensus         2 rILGIDPGl~~tG~gvi~~-~g~~~~~~~~v~~G~I~t~-----~~---~~~~~RL~~I~~~l~~~i~~   61 (166)
T 4ep4_A            2 VVAGIDPGITHLGLGVVAV-EGKGALKARLLHGEVVKTS-----PQ---EPAKERVGRIHARVLEVLHR   61 (166)
T ss_dssp             EEEEEECCSSEEEEEEEEE-CSSSSSCEEEEEEEEEECC-----TT---SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccccCceEEEEEEe-cCCccceEEEEEeCeEECC-----CC---CCHHHHHHHHHHHHHHHHHH
Confidence            5899999999999999998 665      2333333332     11   23333345566667777776

>1dkg_D Molecular chaperone DNAK; HSP70, GRPE, nucleotide exchange factor, coiled-coil, complex (HSP24/HSP70); 2.80A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1

Probab=90.08  E-value=0.13  Score=38.46  Aligned_cols=19  Identities=16%  Similarity=-0.003  Sum_probs=16.9

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++.+++++.
T Consensus         3 ~~vGIDlGTt~s~va~~~~   21 (383)
T 1dkg_D            3 KIIGIDLGTTNSCVAIMDG   21 (383)
T ss_dssp             CCCEEECCSSEEEEEEEET
T ss_pred             cEEEEEcCCCCEEEEEEEC
Confidence            4789999999999999873

>3r9p_A ACKA; ssgcid, seattle structural genomics center for infectious DI acetate kinase, transferase; HET: PGE; 1.90A {Mycobacterium avium subsp} PDB: 3p4i_A 4dq8_A

Probab=89.94  E-value=2.7  Score=32.20  Aligned_cols=31  Identities=0%  Similarity=-0.080  Sum_probs=24.8

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      .+|.|..|++|+|+.|||..+.+++.+...+
T Consensus        13 ~iLviN~GSSSlK~~l~~~~~~~~l~~G~~e   43 (391)
T 3r9p_A           13 RVLVINSGSSSLKFQLVDPEFGVAASTGIVE   43 (391)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEC
T ss_pred             eEEEEecCchhheeEEEecCCCceEEEEEEe
Confidence            4899999999999999997456666666543

>4b9q_A Chaperone protein DNAK; HET: ATP; 2.40A {Escherichia coli} PDB: 2kho_A 1dkg_D

Probab=89.43  E-value=0.24  Score=39.88  Aligned_cols=20  Identities=15%  Similarity=-0.019  Sum_probs=17.5

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..+||||+|||++.+++++.
T Consensus         2 ~~viGIDlGTT~S~Va~~~~   21 (605)
T 4b9q_A            2 GKIIGIDLGTTNSCVAIMDG   21 (605)
T ss_dssp             CCEEEEECCSSEEEEEEEET
T ss_pred             CcEEEEEcCCCcEEEEEEEC
Confidence            46899999999999999863

>3cqy_A Anhydro-N-acetylmuramic acid kinase; APC7501, SO_1313, structural genomics, PSI-2, shewanella one MR-1, protein structure initiative; 2.30A {Shewanella oneidensis}

Probab=88.43  E-value=1.8  Score=32.98  Aligned_cols=80  Identities=14%  Similarity=0.181  Sum_probs=51.7

Q ss_pred             CCCCeEEEEeCCCC--ceeEEEEeCCCCc---EEEEEEeeecccc-------CCCCeEEECHH-------HHHHHHHHHH
Q psy1582          10 APTQIRDRLSATYH--TSRVLIISALTQE---EVVSHSMDISTIS-------PQEGWAEQDPM-------EILQAVQTTM   70 (129)
Q Consensus        10 ~~~~~~lgiDiGtt--~ik~~l~d~~~g~---iv~~~~~~~~~~~-------~~~g~~~~~~~-------~~~~~i~~~~   70 (129)
                      |+..++||+=-|||  .+=+++++. +++   ++...+.||+...       -.++  ..+.+       .+-....+++
T Consensus         2 ~~~~~~iGlMSGTSlDGiD~alv~~-~~~~~~~~~~~~~pyp~~lr~~l~~~~~~~--~~~~~~~~~l~~~lg~~~a~av   78 (370)
T 3cqy_A            2 MNKAYYIGLMSGTSMDGVDAVLVDF-AGEQPQLIGTHTETIPTHLLKGLQRLCLPG--TDEINRLGRLDRSVGKLFALAV   78 (370)
T ss_dssp             TTCCEEEEEEECTTCCCEEEEEEEC-SSSSCEEEEEEEECCCHHHHHHHHGGGCTT--SCHHHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCEEEEEecccchhhHeEEEEEE-eCCeEEEEeeeeecCCHHHHHHHHHhcCCC--CCCHHHHHHHHHHHHHHHHHHH
Confidence            34568899999998  789999998 654   6667777776320       0111  01111       1333445566


Q ss_pred             HHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          71 DRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        71 ~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      ++++++   .++++++|.+||.-+|
T Consensus        79 ~~~l~~---~~~~~~~i~~IGsHGQ  100 (370)
T 3cqy_A           79 NNLLAK---TKIAKDEIIAIGSHGQ  100 (370)
T ss_dssp             HHHHHH---HCCCGGGEEEEEEEEE
T ss_pred             HHHHHH---cCCCcccccEEEeCCc
Confidence            666666   6888899999987765

>3i33_A Heat shock-related 70 kDa protein 2; protein-ADP complex, ATP-binding, chaperone, nucleotide-BIND phosphoprotein, stress response; HET: ADP; 1.30A {Homo sapiens} PDB: 4fsv_A* 1hx1_A 3jxu_A* 2qwl_A* 2qw9_A* 2qwm_A* 1hpm_A* 1ngi_A* 1ngj_A* 3hsc_A* 1ngb_A* 3ldq_A* 3fzf_A* 3fzk_A* 3fzl_A* 3fzm_A* 3fzh_A* 3m3z_A* 1ngh_A* 1ngd_A* ...

Probab=88.36  E-value=0.25  Score=37.24  Aligned_cols=20  Identities=10%  Similarity=-0.157  Sum_probs=17.7

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      ..++|||+|||++++++++.
T Consensus        23 ~~viGID~GTt~s~va~~~~   42 (404)
T 3i33_A           23 MPAIGIDLGTTYSCVGVFQH   42 (404)
T ss_dssp             CCCEEEEECSSEEEEEEEET
T ss_pred             CCEEEEEcCCccEEEEEEEC
Confidence            46899999999999998874

>1hjr_A Holliday junction resolvase (RUVC); site-specific recombinase; 2.50A {Escherichia coli} SCOP: c.55.3.6

Probab=87.82  E-value=4.4  Score=26.97  Aligned_cols=53  Identities=11%  Similarity=0.067  Sum_probs=33.8

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEE---EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEV---VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv---~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .+||||-|++++=.++++. +|+.+   ......++     .    .+...=+..+.+.+.+++.+
T Consensus         2 ~ILGIDPGl~~tG~gvi~~-~g~~~~~v~~G~i~t~-----~----~~~~~Rl~~i~~~l~~~i~~   57 (158)
T 1hjr_A            2 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTK-----V----DDLPSRLKLIYAGVTEIITQ   57 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEE-ETTEEEEEEEEEEECC-----C----SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCCeeEEEEEe-cCCeEEEEEeeEEECC-----C----CCHHHHHHHHHHHHHHHHHH
Confidence            4899999999999999997 67533   33333332     1    13233344566667777776

>3cj1_A Ectonucleoside triphosphate diphosphohydrolase 2; alpha/beta protein, actin-like fold, alternative splicing, calcium, glycoprotein, magnesium; 1.70A {Rattus norvegicus} PDB: 3cj7_A* 3cj9_A* 3cja_A*

Probab=86.84  E-value=0.43  Score=37.31  Aligned_cols=21  Identities=10%  Similarity=0.001  Sum_probs=19.0

Q ss_pred             CCeEEEEeCCCCceeEEEEeC
Q psy1582          12 TQIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~   32 (129)
                      .+|.+.||+|++++|..|++.
T Consensus        33 ~~y~~vID~GSns~Rl~Vy~~   53 (456)
T 3cj1_A           33 LKYGIVLDAGSSHTSMFVYKW   53 (456)
T ss_dssp             EEEEEEEEECSSCEEEEEEEE
T ss_pred             ceEEEEEEcCCCCeEEEEEEE
Confidence            468999999999999999985

>2v7y_A Chaperone protein DNAK; HSP70, heat shock protein, ATPase, domain rearrangement; HET: ADP; 2.37A {Geobacillus kaustophilus HTA426}

Probab=86.66  E-value=0.43  Score=37.44  Aligned_cols=19  Identities=11%  Similarity=-0.018  Sum_probs=17.1

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++++++++.
T Consensus         3 ~~iGIDlGTt~s~va~~~~   21 (509)
T 2v7y_A            3 KIIGIDLGTTNSCVAVLEG   21 (509)
T ss_dssp             CEEEEEECSSEEEEEEEET
T ss_pred             CEEEEEcCCceEEEEEEEC
Confidence            4899999999999999874

>1nu0_A Hypothetical protein YQGF; structural genomics, structure 2 function project, S2F, unknown function; 1.60A {Escherichia coli} SCOP: c.55.3.8 PDB: 1nmn_A 1ovq_A

Probab=86.21  E-value=2.3  Score=27.75  Aligned_cols=24  Identities=4%  Similarity=-0.141  Sum_probs=20.5

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCc
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQE   36 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~   36 (129)
                      +..+||||+|+..+=+++-|. .+.
T Consensus         2 ~~~iLglD~G~kriGvAvsd~-~~~   25 (138)
T 1nu0_A            2 SGTLMAFDFGTKSIGVAVGQR-ITG   25 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEET-TTT
T ss_pred             CCeEEEEEeCCCEEEEEEEcC-CCC
Confidence            345899999999999999998 654

>3hi0_A Putative exopolyphosphatase; 17739545, structural genomics, center for structural genomics, JCSG, protein structure INI PSI-2; HET: MSE; 2.30A {Agrobacterium tumefaciens str}

Probab=86.21  E-value=0.64  Score=36.73  Aligned_cols=79  Identities=8%  Similarity=0.059  Sum_probs=45.7

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeecccc--CCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTIS--PQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~--~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      +.+.+||||+.++|..|++..++  .++...+.....-.  ...|  .-+++. +++..++++...+.++..+  ..+|.
T Consensus        15 ~~~AaIDiGSNS~rL~I~~~~~~~~~~~~~~k~~vrLg~gl~~~g--~Ls~ea-i~r~~~~L~~F~~~~~~~~--v~~v~   89 (508)
T 3hi0_A           15 APVSVIDIGSNSVRLVVYEGLSRAPAVLFNEKVLCGLGKGLALTG--RMHEEG-VTRALMALRRFHVLSEQAQ--AQKLY   89 (508)
T ss_dssp             CCEEEEEECSSEEEEEEESCSSSSCCEEEEEEEECCTTTTHHHHS--SCCHHH-HHHHHHHHHHHHHHHHHTT--CSEEE
T ss_pred             CeEEEEEECCccEEEEEEEEcCCCceEEEEEeEEeecccCccccC--CcCHHH-HHHHHHHHHHHHHHHHhCC--CCeEE
Confidence            45789999999999999997332  34444444332210  0112  123443 4566667766544433233  46788


Q ss_pred             EEEEecCc
Q psy1582          89 TLGITNQR   96 (129)
Q Consensus        89 ~Igis~~~   96 (129)
                      +++.+..+
T Consensus        90 ~vATsA~R   97 (508)
T 3hi0_A           90 VLATAAAR   97 (508)
T ss_dssp             EEECTHHH
T ss_pred             EEeeHHHH
Confidence            88777654

>2kho_A Heat shock protein 70; molecular chaperone, HSP70, peptide binding, protein folding, acetylation, ATP-binding, cell inner membrane; NMR {Escherichia coli}

Probab=86.02  E-value=0.42  Score=38.46  Aligned_cols=19  Identities=16%  Similarity=-0.003  Sum_probs=16.4

Q ss_pred             eEEEEeCCCCceeEEEEeC
Q psy1582          14 IRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~   32 (129)
                      .++|||+|||++.+++++.
T Consensus         3 ~viGIDlGTt~s~va~~~~   21 (605)
T 2kho_A            3 KIIGIDLGTTNSCVAIMDG   21 (605)
T ss_dssp             -CEEEECCSSEEEEEEEET
T ss_pred             CEEEEEcCCcCEEEEEEEC
Confidence            4799999999999999874

>3d2f_A Heat shock protein homolog SSE1; nucleotide exchange factor, protein folding, ATP-binding, Ca binding, chaperone, nucleotide-binding, phosphoprotein; HET: ATP; 2.30A {Saccharomyces cerevisiae} PDB: 3d2e_A* 3c7n_A* 2qxl_A*

Probab=85.66  E-value=0.49  Score=38.67  Aligned_cols=18  Identities=11%  Similarity=-0.021  Sum_probs=16.5

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      +||||+|||++.+++++.
T Consensus         4 ~iGIDlGTtns~va~~~~   21 (675)
T 3d2f_A            4 PFGLDLGNNNSVLAVARN   21 (675)
T ss_dssp             CEEEECCSSEEEEEEEET
T ss_pred             EEEEEcCCCcEEEEEEEC
Confidence            799999999999999874

>2e1z_A Propionate kinase; TDCD, native, acetate kinase, nucleotide, AP4A, ADP, ATP, AMPPNP, transferase; HET: B4P; 1.98A {Salmonella typhimurium} SCOP: c.55.1.2 c.55.1.2 PDB: 1x3n_A* 2e1y_A 1x3m_A* 2e20_A*

Probab=84.75  E-value=1.9  Score=33.36  Aligned_cols=34  Identities=6%  Similarity=0.013  Sum_probs=27.1

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      .+.+|.|..|+||+|+.|||..+.+++.+...+.
T Consensus        17 ~~~ILviN~GSSS~K~~lf~~~~~~~l~~g~ie~   50 (415)
T 2e1z_A           17 FPVVLVINCGSSSIKFSVLDVATCDVLMAGIADG   50 (415)
T ss_dssp             CCEEEEEEECSSEEEEEEEETTTCCEEEEEEEES
T ss_pred             CCeEEEEECCchhheEEEEECCCCCEEEEEEEEe
Confidence            4579999999999999999973457777766543

>1jce_A ROD shape-determining protein MREB; MBL, actin, HSP-70, FTSZ, structural protein; 2.10A {Thermotoga maritima} SCOP: c.55.1.1 c.55.1.1 PDB: 1jcf_A 1jcg_A* 2wus_A

Probab=84.74  E-value=0.49  Score=34.82  Aligned_cols=17  Identities=6%  Similarity=-0.062  Sum_probs=14.7

Q ss_pred             eEEEEeCCCCceeEEEE
Q psy1582          14 IRDRLSATYHTSRVLII   30 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~   30 (129)
                      ..+|||+||+++++++.
T Consensus         4 ~~igIDlGT~~s~v~~~   20 (344)
T 1jce_A            4 KDIGIDLGTANTLVFLR   20 (344)
T ss_dssp             CEEEEEECSSEEEEEET
T ss_pred             ceEEEEcCcCcEEEEEC
Confidence            47999999999999753

>3khy_A Propionate kinase; csgid, IDP01739, ATP-binding, nucleotide-binding, transferase, structural genomics; 1.98A {Francisella tularensis subsp}

Probab=84.50  E-value=1.9  Score=32.97  Aligned_cols=31  Identities=13%  Similarity=0.100  Sum_probs=24.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      .+|.|..|+||+|+.|||..+++++.+...+
T Consensus         3 ~iLviN~GSSSlK~~l~~~~~~~~l~~G~~e   33 (384)
T 3khy_A            3 EILVLNCGSSSVKFALINPHTSQSLVTGLAE   33 (384)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEE
T ss_pred             EEEEEECCchhheEEEEecCCCceEEEEEEE
Confidence            6899999999999999997456666666443

>2zgy_A Plasmid segregation protein PARM; plasmid partition, structural protein; HET: GDP; 1.90A {Escherichia coli} SCOP: c.55.1.1 c.55.1.1 PDB: 1mwk_A* 2qu4_A 1mwm_A* 2zgz_A* 2zhc_A* 3iku_A 3iky_A

Probab=84.39  E-value=0.82  Score=33.44  Aligned_cols=23  Identities=0%  Similarity=-0.213  Sum_probs=18.8

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEV   38 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv   38 (129)
                      ++|||+|++++|++.... +|++.
T Consensus         2 ~igiD~G~sntK~~~~~~-~g~~~   24 (320)
T 2zgy_A            2 LVFIDDGSTNIKLQWQES-DGTIK   24 (320)
T ss_dssp             EEEEEECSSEEEEEEECS-SSCEE
T ss_pred             eEEEecCCccceEEEecC-CCEEE
Confidence            689999999999887666 67643

>1xho_A Chorismate mutase; southeast collaboratory for structural genomics, secsg, protein structure initiative, PSI, structural genomics; 2.20A {Clostridium thermocellum} SCOP: d.79.1.2

Probab=84.34  E-value=2  Score=28.41  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=32.0

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      .+++++++++.+.+++++++   +++.+++|..|-|+..
T Consensus        44 Nt~e~I~~At~ELl~eii~~---N~l~~eDIvSv~FTvT   79 (148)
T 1xho_A           44 NTADEIVAETQKLLKEMAEK---NGLEEDDIISIIFTVT   79 (148)
T ss_dssp             SSHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence            46899999999999999988   8999999999999865

>1iv0_A Hypothetical protein; rnaseh-like, YQGF, structural genomics, riken structural genomics/proteomics initiative, RSGI, unknown function; NMR {Thermus thermophilus} SCOP: c.55.3.8

Probab=83.94  E-value=4.6  Score=24.65  Aligned_cols=21  Identities=5%  Similarity=-0.143  Sum_probs=18.9

Q ss_pred             EEEEeCCCCceeEEEEeCCCCc
Q psy1582          15 RDRLSATYHTSRVLIISALTQE   36 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~   36 (129)
                      +||||+|+..+=.++-|. .+.
T Consensus         3 iLglD~G~kriGvAvsd~-~~~   23 (98)
T 1iv0_A            3 VGALDVGEARIGLAVGEE-GVP   23 (98)
T ss_dssp             EEEEEESSSEEEEEEECS-CCS
T ss_pred             EEEEEeCCCEEEEEEEeC-CCC
Confidence            799999999999999998 664

>4gib_A Beta-phosphoglucomutase; rossmann fold, HAD-like, structural genomics, center for structural genomics of infectious DISE csgid, isomerase; 2.27A {Clostridium difficile}

Probab=83.67  E-value=0.25  Score=34.56  Aligned_cols=23  Identities=4%  Similarity=-0.074  Sum_probs=11.6

Q ss_pred             EEEeCCCCce--------eEEEEeCCCCcEEE
Q psy1582          16 DRLSATYHTS--------RVLIISALTQEEVV   39 (129)
Q Consensus        16 lgiDiGtt~i--------k~~l~d~~~g~iv~   39 (129)
                      =|||+||.++        |+++||. +|.++.
T Consensus         9 ~~~~~~~~~~~~~~~~MIKaViFDl-DGTLvD   39 (250)
T 4gib_A            9 SGVDLGTENLYFQSNAMIEAFIFDL-DGVITD   39 (250)
T ss_dssp             ---------------CCCCEEEECT-BTTTBC
T ss_pred             ccccCCCCCcccCccchhheeeecC-CCcccC
Confidence            4899999987        8999999 898875

>3psf_A Transcription elongation factor SPT6; nucleus; 2.59A {Saccharomyces cerevisiae}

Probab=83.30  E-value=1.4  Score=37.85  Aligned_cols=31  Identities=3%  Similarity=-0.051  Sum_probs=26.3

Q ss_pred             CCeEEEEeCCC-----CceeEEEEeCCCCcEEEEEEe
Q psy1582          12 TQIRDRLSATY-----HTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        12 ~~~~lgiDiGt-----t~ik~~l~d~~~g~iv~~~~~   43 (129)
                      .+.++|+|-|-     +.+|++++|. +|+++.....
T Consensus       518 ~~~VlaldpG~~~~~~~g~k~a~vd~-~G~~l~~~~i  553 (1030)
T 3psf_A          518 IPKILSLTCGQGRFGADAIIAVYVNR-KGDFIRDYKI  553 (1030)
T ss_dssp             CCCEEEEECTTCCTTTSCEEEEEECT-TSCEEEEEEE
T ss_pred             CCeEEEecCCCCCCCCCCeEEEEECC-CCCEEEEEEE
Confidence            35789999984     3799999999 9999998776

>4h0p_A Acetate kinase; askha (acetate and sugar kinas actin) superfamily, ribonuclease H-like fold, transferase; 1.89A {Cryptococcus neoformans}

Probab=82.52  E-value=1.9  Score=33.53  Aligned_cols=32  Identities=3%  Similarity=-0.019  Sum_probs=25.6

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      +..+|.|..|+||+|+.|||..+.+++.+...
T Consensus         5 ~~~ILviNaGSSSlKf~L~~~~~~~~l~~G~v   36 (438)
T 4h0p_A            5 AEYLLAINCGSSSIKGKLFAIPSFELLANLAV   36 (438)
T ss_dssp             CEEEEEEEECSSCEEEEEEEETTTEEEEEEEE
T ss_pred             CCEEEEEECCcccceeEEEEcCCCCeeeEEEE
Confidence            45789999999999999999645666665544

>1dbf_A Protein (chorismate mutase); shikimate pathway, isomerase; 1.30A {Bacillus subtilis} SCOP: d.79.1.2 PDB: 1com_A 2chs_A 2cht_A* 1fnj_A 1fnk_A

Probab=81.62  E-value=2.4  Score=27.38  Aligned_cols=36  Identities=22%  Similarity=0.397  Sum_probs=31.8

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      .++++++++..+.+++++++   +++++++|.+|-|+..
T Consensus        15 Nt~e~I~~at~eLl~~i~~~---N~l~~~dIvSv~FT~T   50 (127)
T 1dbf_A           15 DTEEEILQKTKQLLEKIIEE---NHTKPEDVVQMLLSAT   50 (127)
T ss_dssp             CCHHHHHHHHHHHHHHHHHH---HCCCGGGEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEeC
Confidence            46899999999999999987   7999999999999865

>1g99_A Acetate kinase; alpha/beta, askha (acetate and sugar kinases, HSC70, actin) superfamily, conserved epsilon conformation; HET: ADP; 2.50A {Methanosarcina thermophila} SCOP: c.55.1.2 c.55.1.2 PDB: 1tuu_A* 1tuy_A*

Probab=80.87  E-value=2.7  Score=32.46  Aligned_cols=32  Identities=6%  Similarity=-0.032  Sum_probs=24.9

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      .+|.|..|+||+|+.|||..+.+++.+...+.
T Consensus         2 ~ILviN~GSSS~K~~lf~~~~~~~l~~g~ie~   33 (408)
T 1g99_A            2 KVLVINAGSSSLKYQLIDMTNESALAVGLCER   33 (408)
T ss_dssp             EEEEEEECSSCEEEEEEETTTTEEEEEEEEES
T ss_pred             eEEEEECCchhheeEEEEcCCCcEEEEEEEEe
Confidence            47999999999999999963456666665543

>3aap_A Ectonucleoside triphosphate diphosphohydrolase I; adenosine triphosphatase, ntpdase; 1.60A {Legionella pneumophila} PDB: 3aaq_A* 3aar_A*

Probab=80.67  E-value=1.2  Score=33.64  Aligned_cols=20  Identities=25%  Similarity=0.099  Sum_probs=18.2

Q ss_pred             CeEEEEeCCCCceeEEEEeC
Q psy1582          13 QIRDRLSATYHTSRVLIISA   32 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~   32 (129)
                      .+++.||+|++++|..|++.
T Consensus         3 ~~~avID~GSns~Rl~I~~~   22 (353)
T 3aap_A            3 SCIAVIDAGSTGSRLHIYSY   22 (353)
T ss_dssp             EEEEEEEECSSCEEEEEEEE
T ss_pred             CEEEEEEcCCCCeEEEEEEE
Confidence            57899999999999999985

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

ID	Length	Definition	E-value
Query	129
d2p3ra1	252	c.55.1.4 (A:2-253) Glycerol kinase {Escherichia co	5e-18
d1r59o1	252	c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus c	9e-16

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]} Length = 252

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

 Score = 68.6 bits (167), Expect = 9e-16
 Identities = 35/95 (36%), Positives = 51/95 (53%), Gaps = 4/95 (4%)

Query: 25  SRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR 84
           SR +I      +++ S   +     P+ GW E +  EI  +VQ+ +  A  +    G+  
Sbjct: 13  SRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRP 68

Query: 85  DDIVTLGITNQRETTVVWDLNTGEPLYNAIEQGLR 119
           + I  +GITNQRETTVVWD  TG+P+ NAI    R
Sbjct: 69  EAIAGIGITNQRETTVVWDKTTGQPIANAIVWQSR 103

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	129
d2p3ra1	252	Glycerol kinase {Escherichia coli [TaxId: 562]}	99.96
d1r59o1	252	Glycerol kinase {Enterococcus casseliflavus [TaxId	99.93
d2ap1a2	117	Putative regulator protein YcfX {Salmonella typhim	99.53
d2hoea3	128	N-acetylglucosamine kinase {Thermotoga maritima [T	99.52
d1zc6a1	114	Probable N-acetylglucosamine kinase CV2896 {Chromo	99.51
d1z05a3	128	Transcriptional regulator VC2007 {Vibrio cholerae	99.43
d2gupa1	114	Hypothetical protein SP2142 {Streptococcus pneumon	99.37
d2aa4a1	119	N-acetylmannosamine kinase NanK {Escherichia coli	99.35
d1z6ra2	129	Mlc protein {Escherichia coli [TaxId: 562]}	99.3
d1woqa1	129	Inorganic polyphosphate/ATP-glucomannokinase PPGMK	99.16
d1xc3a1	118	Putative fructokinase YhdR {Bacillus subtilis [Tax	99.09
d2ch5a2	117	N-acetylglucosamine kinase, NAGK {Human (Homo sapi	99.06
d1sz2a1	319	Glucokinase Glk {Escherichia coli [TaxId: 562]}	98.73
d1huxa_	259	Hydroxyglutaryl-CoA dehydratase component A {Acida	98.68
d1q18a1	110	Glucokinase Glk {Escherichia coli [TaxId: 562]}	98.68
d1ig8a1	207	Hexokinase {Baker's yeast (Saccharomyces cerevisia	97.78
d2ewsa1	267	Type II pantothenate kinase, CoaW {Staphylococcus	97.74
d1bdga1	208	Hexokinase {Blood fluke (Schistosoma mansoni) [Tax	97.73
d1czan3	205	Mammalian type I hexokinase {Human (Homo sapiens)	97.52
d1czan1	207	Mammalian type I hexokinase {Human (Homo sapiens)	97.48
d1zbsa2	107	Hypothetical protein PG1100 {Porphyromonas gingiva	97.45
d1e4ft1	193	Cell division protein FtsA {Thermotoga maritima [T	97.42
d1v4sa1	205	Glucokinase {Human (Homo sapiens) [TaxId: 9606]}	97.4
d3bzka5	149	Transcriptional accessory factor Tex {Pseudomonas	96.65
d3bexa1	118	Type III pantothenate kinase, CoaX {Thermotoga mar	96.41
d1saza1	172	butyrate kinase 2 {Thermotoga maritima [TaxId: 233	96.32
d1nbwa2	239	ATPase domain of the glycerol dehydratase reactiva	95.92
d1u6za2	124	Exopolyphosphatase Ppx {Escherichia coli [TaxId: 5	95.55
d2e1za1	189	Propionate kinase {Salmonella typhimurium [TaxId:	95.23
d1t6ca1	126	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	95.12
d2d0oa2	241	Diol dehydratase-reactivating factor large subunit	95.07
d1okja1	106	Hypothetical protein YeaZ {Escherichia coli [TaxId	94.62
d2f9wa2	114	Type III pantothenate kinase, CoaX {Pseudomonas ae	94.43
d1bupa1	185	Heat shock protein 70kDa, ATPase fragment {Cow (Bo	94.23
d1jcea1	137	Prokaryotic actin homolog MreB {Thermotoga maritim	93.59
d1dkgd1	183	Heat shock protein 70kDa, ATPase fragment {Escheri	93.46
d1g99a1	197	Acetate kinase {Archaeon Methanosarcina thermophil	92.58
d1hjra_	158	RuvC resolvase {Escherichia coli [TaxId: 562]}	91.68
d2a6aa1	103	Hypothetical protein TM0874 {Thermotoga maritima [	91.15
d1t6ca2	180	Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 6	89.99
d1xhoa_	112	Chorismate mutase {Clostridium thermocellum [TaxId	85.26
d1nu0a_	138	Hypothetical protein YqgF (RuvX) {Escherichia coli	85.0
d2zgya1	157	Plasmid segregation protein ParM {Escherichia coli	82.78
d1iv0a_	98	Hypothetical protein, YqgF homologue {Thermus ther	82.09

>d1r59o1 c.55.1.4 (O:5-256) Glycerol kinase {Enterococcus casseliflavus [TaxId: 37734]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glycerol kinase
domain: Glycerol kinase
species: Enterococcus casseliflavus [TaxId: 37734]

Probab=99.93  E-value=2e-28  Score=177.13  Aligned_cols=111  Identities=32%  Similarity=0.483  Sum_probs=102.1

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      .|+||||+|||++|++|||. +|+++++.+.+++...|++|++||||++||+.+.+++++++++   ++..+.+|.+|||
T Consensus         1 nyvlgiDiGTtsvKa~l~D~-~g~~~~~~~~~~~~~~~~~g~~eqd~~~~~~~~~~~~~~~~~~---~~~~~~~i~aI~i   76 (252)
T d1r59o1           1 NYVMAIDQGTTSSRAIIFDR-NGKKIGSSQKEFPQYFPKSGWVEHNANEIWNSVQSVIAGAFIE---SGIRPEAIAGIGI   76 (252)
T ss_dssp             CEEEEEBCCSSBCBCCEECS-SSCBCCCCCCBCCCCCCSTTCCBCCGGGSSSTTTTTSHHHHTT---TTCCTTSEEEEEE
T ss_pred             CEEEEEEecccceeeeEEeC-CCCEEEEEEEeCCceecCCCcEEECHHHHHHHHHHHHHHHhhh---hhhcccccceEEE
Confidence            48999999999999999999 9999999999999888999999999999999999999988775   6777889999999


Q ss_pred             ecCcceEEEEeCCCCcccccceeecCCCcccccCC
Q psy1582          93 TNQRETTVVWDLNTGEPLYNAIEQGLRIVDCGSGR  127 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~~~i~w~d~r~~~~~~~  127 (129)
                      ++++++++++|+++|+|++|++.|.|+|+.+++++
T Consensus        77 s~~~~~~v~~D~~~G~~l~~~i~w~D~r~~~~~~~  111 (252)
T d1r59o1          77 TNQRETTVVWDKTTGQPIANAIVWQSRQSSPIADQ  111 (252)
T ss_dssp             CCCSSCCCCBCSSSCCCSSCCBCTTCCSSCHHHHH
T ss_pred             eCCcceEEEEECCCCCCcccccccCccchHHHHHH
Confidence            99999999999755999999999999999877654

>d2ap1a2 c.55.1.10 (A:1-117) Putative regulator protein YcfX {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative regulator protein YcfX
species: Salmonella typhimurium [TaxId: 90371]

Probab=99.53  E-value=1.1e-14  Score=92.90  Aligned_cols=86  Identities=9%  Similarity=0.004  Sum_probs=68.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      |||||+|+|++|++++|. +|+++.+.+.+++         ..+++.+++.+.+.++++..+.       ..+.+||++.
T Consensus         2 yiGiDiGgT~i~~~l~d~-~g~i~~~~~~~t~---------~~~~~~~~~~i~~~i~~~~~~~-------~~~~~igi~~   64 (117)
T d2ap1a2           2 YYGFDIGGTKIALGVFDS-TRRLQWEKRVPTP---------HTSYSAFLDAVCELVEEADQRF-------GVKGSVGIGI   64 (117)
T ss_dssp             EEEEEECSSEEEEEEEET-TCCEEEEEEEECC---------CSCHHHHHHHHHHHHHHHHHHH-------TSCCEEEEEE
T ss_pred             EEEEEECcceEEEEEEeC-CCCEEEEEEEeec---------ccCHHHHHHHHHHHHHHHHhhc-------CcceeEEEec
Confidence            599999999999999999 9999998887764         2467888888988888887652       4567899998


Q ss_pred             CcceEEEEeCCCCcccccc-eeecCCCc
Q psy1582          95 QRETTVVWDLNTGEPLYNA-IEQGLRIV  121 (129)
Q Consensus        95 ~~~g~v~~d~~~g~~~~~~-i~w~d~r~  121 (129)
                      ++    ++|.++|.+.++. ..|.+...
T Consensus        65 pG----~vd~~~g~i~~~~~~~w~~~~l   88 (117)
T d2ap1a2          65 PG----MPETEDGTLYAANVPAASGKPL   88 (117)
T ss_dssp             SS----BSCCTTSCCBCTTCTTTTTSCH
T ss_pred             CC----ccccccceeeccCccccCCCcH
Confidence            87    6798878776544 46887553

>d2hoea3 c.55.1.10 (A:72-199) N-acetylglucosamine kinase {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylglucosamine kinase
species: Thermotoga maritima [TaxId: 2336]

Probab=99.52  E-value=6.6e-15  Score=95.21  Aligned_cols=93  Identities=13%  Similarity=0.110  Sum_probs=75.1

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      ..|+||||+|+++++++++|. .|+++.+.+.+++.        ..+++.+++.+.+.++++++..   +....++.+||
T Consensus         3 ~~~~igidig~~~i~~~l~d~-~G~il~~~~~~~~~--------~~~~~~~~~~i~~~i~~~~~~~---~~~~~~i~gig   70 (128)
T d2hoea3           3 CAYVLGIEVTRDEIAACLIDA-SMNILAHEAHPLPS--------QSDREETLNVMYRIIDRAKDMM---EKLGSKLSALT   70 (128)
T ss_dssp             GCEEEEEEECSSEEEEEEEET-TCCEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHHHH---HHTTCCCCEEE
T ss_pred             cEEEEEEEECCCEEEEEEEcC-CCCEEEEEEEeccc--------CCCHHHHHHHHHHHHHHHHHHh---ccccCceEEEe
Confidence            469999999999999999999 99999988887652        2468888888888888887652   44567899999


Q ss_pred             EecCcceEEEEeCCCCcccc-cceeecCCC
Q psy1582          92 ITNQRETTVVWDLNTGEPLY-NAIEQGLRI  120 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~-~~i~w~d~r  120 (129)
                      |+.+|    ++|.++|..++ |.+.|.+-.
T Consensus        71 i~~pG----~vd~~~g~i~~~~~l~w~~~~   96 (128)
T d2hoea3          71 VAAPG----PIDTERGIIIDPRNFPLSQIP   96 (128)
T ss_dssp             EEESS----CEETTTTEECCCSSCTTBTSC
T ss_pred             cceee----eEcCCCCEEEeeccccccCCc
Confidence            99887    57988788765 556798854

>d1zc6a1 c.55.1.5 (A:8-121) Probable N-acetylglucosamine kinase CV2896 {Chromobacterium violaceum [TaxId: 536]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Probable N-acetylglucosamine kinase CV2896
species: Chromobacterium violaceum [TaxId: 536]

Probab=99.51  E-value=2.8e-14  Score=90.73  Aligned_cols=68  Identities=13%  Similarity=0.092  Sum_probs=57.1

Q ss_pred             CCCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          10 APTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        10 ~~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      ++++|+||||+|+|++|++|+|. +|+++.+.+.+       +++.+++++++|+.+.+++++++++   ++....++.
T Consensus         1 psm~y~lGID~GGT~tk~~l~d~-~G~il~~~~~~-------~~~~~~~~~~~~~~i~~~i~~~~~~---ag~~~~~~~   68 (114)
T d1zc6a1           1 PSIRYLIGVDGGGTGTRIRLHAS-DGTPLAMAEGG-------ASALSQGIAKSWQAVLSTLEAAFQQ---AGLPAAPAS   68 (114)
T ss_dssp             CCCCEEEEEEECSSCEEEEEEET-TCCEEEEEEES-------CCCGGGCHHHHHHHHHHHHHHHHHH---TTCCCCCGG
T ss_pred             CCccEEEEEEcCcceEEEEEEcC-CCCEEEEEEcc-------CCCcccCHHHHHHHHHHHHHHHHHH---cCCChhhhc
Confidence            35789999999999999999999 99999876543       2335678999999999999999887   788777764

>d1z05a3 c.55.1.10 (A:81-208) Transcriptional regulator VC2007 {Vibrio cholerae [TaxId: 666]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Transcriptional regulator VC2007
species: Vibrio cholerae [TaxId: 666]

Probab=99.43  E-value=8.6e-13  Score=84.83  Aligned_cols=91  Identities=12%  Similarity=0.070  Sum_probs=73.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      -++||||||+++++++++|. +|+++.+.+.+++         +.++++.++.+.+.+++++++   .+.+..++.+||+
T Consensus         4 ~~~lgi~ig~~~i~~~l~d~-~G~il~~~~~~~~---------~~~~~~~~~~i~~~i~~~~~~---~~~~~~~i~gIgi   70 (128)
T d1z05a3           4 WQFLSMRLGRGYLTIALHEL-GGEVLIDTKIDIH---------EIDQDDVLARLLFEIEEFFQT---YAAQLDRVTSIAI   70 (128)
T ss_dssp             EEEEEEEEETTEEEEEEEET-TSCEEEEEEEECC---------CCBHHHHHHHHHHHHHHHHHH---TTTTCCEEEEEEE
T ss_pred             CEEEEEEECCCEEEEEEEcC-CCCEEEEEEeccc---------cCCHHHHHHHHHHHHHHHHHH---cccccccceEEEe
Confidence            36899999999999999999 9999998877764         245677889999999999887   6777788999999


Q ss_pred             ecCcceEEEEeCCCCcccc-cceeecCCC
Q psy1582          93 TNQRETTVVWDLNTGEPLY-NAIEQGLRI  120 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~-~~i~w~d~r  120 (129)
                      +.++    ++|.+.+.... |.+.|.+..
T Consensus        71 ~~pG----~vd~~~~~~~~~~~~~~~~~~   95 (128)
T d1z05a3          71 TLPG----LVNSEQGIVLQMPHYNVKNLA   95 (128)
T ss_dssp             EESS----EEETTTTEEEECSSSBCSSBC
T ss_pred             eeee----eeeccceeeeccccCCCCCcc
Confidence            9877    67877565554 445687743

>d2gupa1 c.55.1.10 (A:1-114) Hypothetical protein SP2142 {Streptococcus pneumoniae [TaxId: 1313]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Hypothetical protein SP2142
species: Streptococcus pneumoniae [TaxId: 1313]

Probab=99.37  E-value=9e-13  Score=83.83  Aligned_cols=89  Identities=7%  Similarity=-0.000  Sum_probs=62.2

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++++||+|+|++|++++|. +|+++.+.+.+++          ...++    +.+.+.+.+.        ..++.+|||+
T Consensus         2 ~i~~iDiGgT~i~~~l~d~-~g~i~~~~~~~t~----------~~~~~----~~~~i~~~~~--------~~~i~gIGi~   58 (114)
T d2gupa1           2 TIATIDIGGTGIKFASLTP-DGKILDKTSISTP----------ENLED----LLAWLDQRLS--------EQDYSGIAMS   58 (114)
T ss_dssp             CEEEEEEETTEEEEEEECT-TCCEEEEEEECCC----------SSHHH----HHHHHHHHHT--------TSCCSEEEEE
T ss_pred             eEEEEEeCcccEEEEEEcC-CCCEEEEEEEccc----------ccHHH----HHHHHHHHhh--------hcccceEEEe
Confidence            5789999999999999999 9999988776553          22333    3333444433        2578999999


Q ss_pred             cCcceEEEEeCCCCcccc-ccee-ecCCCcccccCCCC
Q psy1582          94 NQRETTVVWDLNTGEPLY-NAIE-QGLRIVDCGSGRFN  129 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~-~~i~-w~d~r~~~~~~~~~  129 (129)
                      .+|    ++|.++|.+.+ |.+. |.+.......++||
T Consensus        59 ~pG----~vd~~~g~i~~~~~l~~~~~~~l~~~l~~~~   92 (114)
T d2gupa1          59 VPG----AVNQETGVIDGFSAVPYIHGFSWYEALSSYQ   92 (114)
T ss_dssp             ESS----EECTTTCBEESCCSSGGGSSSBHHHHTGGGC
T ss_pred             ccc----cccCCccEEEcccccCcccCCcHHHHHHhCC
Confidence            987    78988787764 4554 56655544444553

>d2aa4a1 c.55.1.10 (A:1-119) N-acetylmannosamine kinase NanK {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: N-acetylmannosamine kinase NanK
species: Escherichia coli [TaxId: 562]

Probab=99.35  E-value=1.9e-13  Score=87.34  Aligned_cols=85  Identities=8%  Similarity=-0.010  Sum_probs=60.6

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      ++||||||+|++|++++|. +|+++.+.+++++.        .++++.+.+.+.+.++++          ..++.+|||+
T Consensus         2 ~~lgiDiGgT~i~~~l~d~-~G~i~~~~~~~~~~--------~~~~~~~~~~i~~~i~~~----------~~~~~~igI~   62 (119)
T d2aa4a1           2 TTLAIDIGGTKLAAALIGA-DGQIRDRRELPTPA--------SQTPEALRDALSALVSPL----------QAHAQRVAIA   62 (119)
T ss_dssp             CEEEEEECSSEEEEEEECT-TCCEEEEEEEECCS--------SCCHHHHHHHHHHHHTTT----------GGGCSEEEEE
T ss_pred             eEEEEEeCcCEEEEEEEcC-CCCEEEeEEEeccc--------cCcHHHHHHHHHHHHHHh----------hccCceEEEE
Confidence            5799999999999999999 99999988877642        246666655554443322          2457899999


Q ss_pred             cCcceEEEEeCCCCccccc-ce-eecCCCc
Q psy1582          94 NQRETTVVWDLNTGEPLYN-AI-EQGLRIV  121 (129)
Q Consensus        94 ~~~~g~v~~d~~~g~~~~~-~i-~w~d~r~  121 (129)
                      .++    ++|.+++...++ .+ .|.+-..
T Consensus        63 ~pG----~v~~~~~~~~~~~~l~~w~~~~l   88 (119)
T d2aa4a1          63 STG----IIRDGSLLALNPHNLGGLLHFPL   88 (119)
T ss_dssp             ESS----EEETTEEECSSGGGGGGGTTCCH
T ss_pred             eee----eEcCCCcEEEccCccccccCCCH
Confidence            877    678775666554 33 5887543

>d1z6ra2 c.55.1.10 (A:82-210) Mlc protein {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Mlc protein
species: Escherichia coli [TaxId: 562]

Probab=99.30  E-value=4.7e-12  Score=81.49  Aligned_cols=90  Identities=13%  Similarity=0.127  Sum_probs=71.2

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGI   92 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igi   92 (129)
                      -++||||+|+++++++++|. +|+++.+.+.+++.         .+++++++.+.+.+++++++   .+....++.+||+
T Consensus         4 ~~~l~i~i~~~~i~~~l~Dl-~G~~l~~~~~~~~~---------~~~~~~~~~l~~~i~~~l~~---~~~~~~~i~gIgi   70 (129)
T d1z6ra2           4 WHYLSLRISRGEIFLALRDL-SSKLVVEESQELAL---------KDDLPLLDRIISHIDQFFIR---HQKKLERLTSIAI   70 (129)
T ss_dssp             CEEEEEEEETTEEEEEEEET-TCCEEEEEEEECCS---------SCSSCHHHHHHHHHHHHHHH---TGGGCCCEEEEEE
T ss_pred             eEEEEEEECCCEEEEEEEcC-CCCEEEEEEeeccc---------cchhHHHHHHHHHHHHHHHh---cCcccccceeEEE
Confidence            47999999999999999999 99999988887742         34566778888888888876   5666788999999


Q ss_pred             ecCcceEEEEeCCCCcccc-cce-eecCC
Q psy1582          93 TNQRETTVVWDLNTGEPLY-NAI-EQGLR  119 (129)
Q Consensus        93 s~~~~g~v~~d~~~g~~~~-~~i-~w~d~  119 (129)
                      +.++    ++|.++|...+ |.+ .|.+-
T Consensus        71 ~~pG----~v~~~~~~~~~~~~~~~w~~~   95 (129)
T d1z6ra2          71 TLPG----IIDTENGIVHRMPFYEDVKEM   95 (129)
T ss_dssp             EESS----EEETTTTEEEECTTCTTCSSB
T ss_pred             eeee----eeeecccceeccCcchhccCc
Confidence            9887    67887677654 333 57764

>d1woqa1 c.55.1.10 (A:11-139) Inorganic polyphosphate/ATP-glucomannokinase PPGMK {Arthrobacter sp. KM [TaxId: 184230]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Inorganic polyphosphate/ATP-glucomannokinase PPGMK
species: Arthrobacter sp. KM [TaxId: 184230]

Probab=99.16  E-value=1.7e-11  Score=78.76  Aligned_cols=92  Identities=7%  Similarity=-0.091  Sum_probs=59.6

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEE-EEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVS-HSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~-~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      .++||||+|+|++|++++|.+.|+++.+ .+.+++.        ..+++.+.+.+.+.++++.++    .....++.+||
T Consensus         2 ~~vlGiDiGgT~i~~~l~d~~~g~i~~~~~~~~t~~--------~~~~~~~~~~i~~~~~~l~~~----~~~~~~~~gIG   69 (129)
T d1woqa1           2 APLIGIDIGGTGIKGGIVDLKKGKLLGERFRVPTPQ--------PATPESVAEAVALVVAELSAR----PEAPAAGSPVG   69 (129)
T ss_dssp             CCEEEEEECSSEEEEEEEETTTTEEEEEEEEEECCS--------SCCHHHHHHHHHHHHHHHHTS----TTCCCTTCCEE
T ss_pred             CCEEEEEECcceEEEEEEECCCCEEEEEEeeccccc--------CCCHHHHHHHHHHHHHHHHhc----cccccccceee
Confidence            3689999999999999999734555543 3444431        245777888887777766543    22345678899


Q ss_pred             EecCcceEEEEeCCCCcccccc--eeecCCCc
Q psy1582          92 ITNQRETTVVWDLNTGEPLYNA--IEQGLRIV  121 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~~~~--i~w~d~r~  121 (129)
                      ++.++    ++|+.++. ..+.  ..|.+...
T Consensus        70 i~~pG----~vd~~~~~-~~~~~~~~w~~~~l   96 (129)
T d1woqa1          70 VTFPG----IIQHGVVH-SAANVDKSWLNTDI   96 (129)
T ss_dssp             EEESS----CEETTEEC-CCTTSCGGGTTCBH
T ss_pred             eccee----eEecCeEE-EecccCCCcccccc
Confidence            99876    56864222 2232  35888543

>d1xc3a1 c.55.1.10 (A:1-118) Putative fructokinase YhdR {Bacillus subtilis [TaxId: 1423]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ROK
domain: Putative fructokinase YhdR
species: Bacillus subtilis [TaxId: 1423]

Probab=99.09  E-value=6.3e-11  Score=75.25  Aligned_cols=79  Identities=9%  Similarity=-0.057  Sum_probs=53.3

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .++|||+|+|++|++++|. +|+++.+.++|++           .+++.++.+.    +.++        ..++.+|||+
T Consensus         1 l~~giDiGgT~i~~~l~d~-~g~i~~~~~~~t~-----------~~~~~~~~i~----~~~~--------~~~~~~igi~   56 (118)
T d1xc3a1           1 MLGGIEAGGTKFVCAVGRE-DGTIIDRIEFPTK-----------MPDETIEKVI----QYFS--------QFSLQAIGIG   56 (118)
T ss_dssp             CEEEEEECSSEEEEEEECT-TSCEEEEEEEECC-----------CHHHHHHHHH----HHHT--------TSCCSEEEEE
T ss_pred             CEEEEEeccCEEEEEEEcC-CCCEEEEEEecCC-----------CHHHHHHHHH----HHHh--------hccceeccee
Confidence            3799999999999999999 9999988776542           3555544433    2332        2457889998


Q ss_pred             cCcceEEEEeCCCC-----ccc-ccceeecCCC
Q psy1582          94 NQRETTVVWDLNTG-----EPL-YNAIEQGLRI  120 (129)
Q Consensus        94 ~~~~g~v~~d~~~g-----~~~-~~~i~w~d~r  120 (129)
                      .++    ++|.+.+     .+. .|...|.+-.
T Consensus        57 ~~G----~v~~~~~~~~~g~v~~~~~~~w~~~~   85 (118)
T d1xc3a1          57 SFG----PVDNDKTSQTYGTITATPKAGWRHYP   85 (118)
T ss_dssp             ECS----SBCCCTTSTTTTSBCCCSSTTTBTCC
T ss_pred             EEe----eeecCCCccceeEEEcCCcccccCcC
Confidence            876    4565432     333 3445687744

>d2ch5a2 c.55.1.5 (A:1-117) N-acetylglucosamine kinase, NAGK {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: N-acetylglucosamine kinase, NAGK
species: Human (Homo sapiens) [TaxId: 9606]

Probab=99.06  E-value=3.8e-10  Score=71.77  Aligned_cols=76  Identities=14%  Similarity=0.133  Sum_probs=57.0

Q ss_pred             CCCeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCC-CCeeE
Q psy1582          11 PTQIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSR-DDIVT   89 (129)
Q Consensus        11 ~~~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~-~~I~~   89 (129)
                      |..+++|||.|+|+++++|+|. +|+++.+.+.+-..      ....+.+++++.+.+.+++++++   ++.+. .++.+
T Consensus         1 m~~~~~GIDgGGTkT~~~l~d~-~G~~l~~~~~g~~N------~~~~~~~~~~~~i~~~i~~~l~~---~~~~~~~~i~~   70 (117)
T d2ch5a2           1 MAAIYGGVEGGGTRSEVLLVSE-DGKILAEADGLSTN------HWLIGTDKCVERINEMVNRAKRK---AGVDPLVPLRS   70 (117)
T ss_dssp             SSCEEEEEEECTTCEEEEEEET-TSCEEEEEEECCCC------HHHHCHHHHHHHHHHHHHHHHHH---HTCCTTCCBSE
T ss_pred             CCcEEEEEEcChhhEEEEEECC-CCCEEEEEEcCCCC------cchhhHHHHHHHHHHHHHHHHHH---hcCCCCccccE
Confidence            4679999999999999999999 99999877653321      12246677888888888888776   45544 46777


Q ss_pred             EEEecCc
Q psy1582          90 LGITNQR   96 (129)
Q Consensus        90 Igis~~~   96 (129)
                      ++++..|
T Consensus        71 i~~GlAG   77 (117)
T d2ch5a2          71 LGLSLSG   77 (117)
T ss_dssp             EEEEETT
T ss_pred             EEEEeec
Confidence            8777654

>d1sz2a1 c.55.1.7 (A:3-321) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=98.73  E-value=2e-08  Score=72.28  Aligned_cols=72  Identities=8%  Similarity=-0.055  Sum_probs=47.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEe-eeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSM-DISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLG   91 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~-~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Ig   91 (129)
                      +|+|++|||+|++|++++|. ++.++...+. +.+           +++.    +.+.+++++++   .   ..++.+||
T Consensus         1 ~y~L~~DIGGT~ir~glvd~-~~~~i~~~~~~~~~-----------~~~~----~~~~i~~~~~~---~---~~~~~~ig   58 (319)
T d1sz2a1           1 KYALVGDVGGTNARLALCDI-ASGEISQAKTYSGL-----------DYPS----LEAVIRVYLEE---H---KVEVKDGC   58 (319)
T ss_dssp             CEEEEEEEETTEEEEEEEET-TTCCEEEEEEEEGG-----------GCSC----HHHHHHHHHHH---S---CCCCCEEE
T ss_pred             CEEEEEEEChhheeeEEEEC-CCCEEEEEEEeCCC-----------CHhH----HHHHHHHHHHh---c---CCCcceEE
Confidence            58999999999999999998 5555544333 221           1122    33445566665   2   24788999


Q ss_pred             EecCcceEEEEeCCCCccc
Q psy1582          92 ITNQRETTVVWDLNTGEPL  110 (129)
Q Consensus        92 is~~~~g~v~~d~~~g~~~  110 (129)
                      |+.++    ++|.+++.+.
T Consensus        59 I~~pG----~vd~~~~~~~   73 (319)
T d1sz2a1          59 IAIAC----PITGDWVAMT   73 (319)
T ss_dssp             EEESS----CCCSSEECCS
T ss_pred             EEccc----CCCCCccccc
Confidence            99887    5787655443

>d1huxa_ c.55.1.5 (A:) Hydroxyglutaryl-CoA dehydratase component A {Acidaminococcus fermentans [TaxId: 905]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hydroxyglutaryl-CoA dehydratase component A
species: Acidaminococcus fermentans [TaxId: 905]

Probab=98.68  E-value=1.8e-08  Score=70.15  Aligned_cols=49  Identities=8%  Similarity=0.141  Sum_probs=37.1

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHH
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDR   72 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~   72 (129)
                      +|+||||+|+|++|++++|. +|+++.+...++.          .+++...+.+.+.+++
T Consensus         2 M~~lGIDiGGT~~k~~vvd~-~g~il~~~~~~t~----------~~~~~~~~~i~~~l~~   50 (259)
T d1huxa_           2 IYTLGIDVGSTASKCIILKD-GKEIVAKSLVAVG----------TGTSGPARSISEVLEN   50 (259)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TTEEEEEEEEECC----------SSCCHHHHHHHHHHHH
T ss_pred             cEEEEEEeCcceEEEEEEcC-CCcEEEEEEecCC----------CCHHHHHHHHHHHHHH
Confidence            68999999999999999999 9999988776653          2344555555554443

>d1q18a1 c.55.1.7 (A:2-111) Glucokinase Glk {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Glucokinase
domain: Glucokinase Glk
species: Escherichia coli [TaxId: 562]

Probab=98.68  E-value=9.4e-09  Score=64.08  Aligned_cols=28  Identities=7%  Similarity=-0.016  Sum_probs=23.5

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSH   41 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~   41 (129)
                      +|+|++|||+|++|++++|. ++.++...
T Consensus         2 ~~~L~~DIGGTn~r~alv~~-~~~~l~~~   29 (110)
T d1q18a1           2 KYALVGDVGGTNARLALCDI-ASGEISQA   29 (110)
T ss_dssp             CEEEEEEECSSEEEEEEEET-TTCCEEEE
T ss_pred             cEEEEEEECchhEEEEEEEc-CCCeEEEE
Confidence            69999999999999999998 66655433

>d1ig8a1 c.55.1.3 (A:18-224) Hexokinase {Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Baker's yeast (Saccharomyces cerevisiae), pII [TaxId: 4932]

Probab=97.78  E-value=5.5e-05  Score=51.85  Aligned_cols=85  Identities=13%  Similarity=0.146  Sum_probs=50.9

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCcE-EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCC
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQEE-VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLS   83 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~i-v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~   83 (129)
                      .|.+... +-+++||+|+|+.|++++.. .|+- ....+..+..  |..-....+.+++|+.+.+++.+.+++.  ....
T Consensus        56 lPtG~E~-G~flalDlGGTnlRv~~V~L-~g~~~~~~~~~~~~i--p~~~~~~~~~~~lFd~iA~~i~~f~~e~--~~~~  129 (207)
T d1ig8a1          56 FPTGKES-GDFLAIDLGGTNLRVVLVKL-GGDRTFDTTQSKYRL--PDAMRTTQNPDELWEFIADSLKAFIDEQ--FPQG  129 (207)
T ss_dssp             CCCSCCE-EEEEEEEECSSEEEEEEEEE-ESSSCEEEEEEEEEC--CTTGGGCSCTHHHHHHHHHHHHHHHHHH--CTTC
T ss_pred             CCCCCcc-ceEEEEEecCceEEEEEEEE-cCCCceEEeeeeeeC--CHHHhcCCcHHHHHHHHHHHHHHHHHHh--cccc
Confidence            3555433 45799999999999999998 6533 2222222221  1111112356789999999999988762  1122


Q ss_pred             CCCeeEEEEecC
Q psy1582          84 RDDIVTLGITNQ   95 (129)
Q Consensus        84 ~~~I~~Igis~~   95 (129)
                      ..+..-+|++..
T Consensus       130 ~~~~l~lGfTFS  141 (207)
T d1ig8a1         130 ISEPIPLGFTFS  141 (207)
T ss_dssp             CCSCEEEEEECC
T ss_pred             cCCcceeEEEEe
Confidence            344445666654

>d2ewsa1 c.55.1.14 (A:1-267) Type II pantothenate kinase, CoaW {Staphylococcus aureus [TaxId: 1280]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Fumble-like
domain: Type II pantothenate kinase, CoaW
species: Staphylococcus aureus [TaxId: 1280]

Probab=97.74  E-value=3e-05  Score=53.15  Aligned_cols=24  Identities=8%  Similarity=-0.003  Sum_probs=22.1

Q ss_pred             EEEeCCCCceeEEEEeCCCCcEEEE
Q psy1582          16 DRLSATYHTSRVLIISALTQEEVVS   40 (129)
Q Consensus        16 lgiDiGtt~ik~~l~d~~~g~iv~~   40 (129)
                      ||||+|+|++|++++|. +++++.+
T Consensus         3 iGIDiGGT~ik~~lvd~-~g~i~~~   26 (267)
T d2ewsa1           3 VGIDAGGTLIKIVQEQD-NQRTFKT   26 (267)
T ss_dssp             EEEEECSSEEEEEEECS-SCEEEEE
T ss_pred             EEEEEChhhEEEEEEeC-CCcEEEE
Confidence            89999999999999998 8988765

>d1bdga1 c.55.1.3 (A:13-222) Hexokinase {Blood fluke (Schistosoma mansoni) [TaxId: 6183]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Hexokinase
species: Blood fluke (Schistosoma mansoni) [TaxId: 6183]

Probab=97.73  E-value=0.0002  Score=49.01  Aligned_cols=79  Identities=16%  Similarity=0.202  Sum_probs=49.7

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc----EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhC
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAH   80 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~----iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~   80 (129)
                      .|.+... +-+|+||+|+|+.|+++++. .|+    .+.+..++++...     ...+.+++|+.|.+++.+.+++   .
T Consensus        59 lPtG~E~-G~fLalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~ip~~~-----~~~~~~~lFd~iA~~i~~fl~~---~  128 (208)
T d1bdga1          59 TPNGTET-GNFLALDLGGTNYRVLSVTL-EGKGKSPRIQERTYCIPAEK-----MSGSGTELFKYIAETLADFLEN---N  128 (208)
T ss_dssp             CCCSCCC-EEEEEEEESSSSEEEEEEEE-CC-CCCCEEEEEEECCCTTT-----TTSBHHHHHHHHHHHHHHHHHH---T
T ss_pred             CCCCCcc-ceEEEEEecCceEEEEEEEe-cCCCcceEEEEEEeeCCHHH-----ccCCHHHHHHHHHHHHHHHHHh---c
Confidence            3555544 46799999999999999998 552    2333333333211     1235688999999999998876   4


Q ss_pred             CCCCCCeeEEEEec
Q psy1582          81 GLSRDDIVTLGITN   94 (129)
Q Consensus        81 ~~~~~~I~~Igis~   94 (129)
                      +... +..-+|++.
T Consensus       129 ~~~~-~~l~lGfTF  141 (208)
T d1bdga1         129 GMKD-KKFDLGFTF  141 (208)
T ss_dssp             TCCS-SCEEEEEEE
T ss_pred             CCCC-CccccEEEE
Confidence            4332 233355554

>d1czan3 c.55.1.3 (N:466-670) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.52  E-value=0.00018  Score=49.19  Aligned_cols=65  Identities=14%  Similarity=0.127  Sum_probs=42.7

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCCc---EEEEEE--eeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQE---EVVSHS--MDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~---iv~~~~--~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .|.+... +.+|+||+|+|+.|+++++. .|.   .+...+  ++++...     .....+++++.|.+++.+.+++
T Consensus        54 lPtG~E~-G~fLalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~~ip~~~-----~~~~~~eLFd~iA~~i~~fl~~  123 (205)
T d1czan3          54 TPDGTEN-GDFLALDLGGTNFRVLLVKI-RSGKKRTVEMHNKIYAIPIEI-----MQGTGEELFDHIVSCISDFLDY  123 (205)
T ss_dssp             CCCSCCC-EEEEEEEESSSSEEEEEEEE-ECSTTCEEEEEEEEECCCHHH-----HTSBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCCCcc-ceEEEEEecCceEEEEEEEe-cCCCCceEEEEeeeecCCHHH-----hcCCHHHHHHHHHHHHHHHHHh
Confidence            3555533 46799999999999999887 332   233222  3332111     1124578999999999999876

>d1czan1 c.55.1.3 (N:16-222) Mammalian type I hexokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Mammalian type I hexokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.48  E-value=6.3e-05  Score=51.54  Aligned_cols=67  Identities=16%  Similarity=0.152  Sum_probs=42.8

Q ss_pred             CcCCCCCCCeEEEEeCCCCceeEEEEeCCCC---cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           5 RPQAVAPTQIRDRLSATYHTSRVLIISALTQ---EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         5 ~~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g---~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      .|.+... +.+++||+|+|+.|++++.. .|   ..+...+..++.  |. .-.....+++++.|.+++.+.+++
T Consensus        56 lP~G~E~-G~flalDlGGTn~Rv~~V~L-~g~~~~~~~~~~~~~~i--p~-~~~~~~~~~lFd~IA~~i~~fl~~  125 (207)
T d1czan1          56 IPDGSEK-GDFIALDLGGSSFRILRVQV-NHEKNQNVHMESEVYDT--PE-NIVHGSGSQLFDHVAECLGDFMEK  125 (207)
T ss_dssp             CCCSCCC-EEEEEEEESSSSEEEEEEEE-EEETTEEEEEEEEEECC--CH-HHHSSBHHHHHHHHHHHHHHHHHH
T ss_pred             CCCcccc-ceEEEEecCCceEEEEEEEe-CCCCCccEEEEEEeecC--CH-HHhcCCHHHHHHHHHHHHHHHHHh
Confidence            3455544 56799999999999999997 44   233322222321  10 001234578999999999988875

>d1zbsa2 c.55.1.5 (A:1-107) Hypothetical protein PG1100 {Porphyromonas gingivalis [TaxId: 837]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: BadF/BadG/BcrA/BcrD-like
domain: Hypothetical protein PG1100
species: Porphyromonas gingivalis [TaxId: 837]

Probab=97.45  E-value=0.00021  Score=43.66  Aligned_cols=68  Identities=15%  Similarity=0.002  Sum_probs=42.6

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|+||.|+|+++++|.|  +|+++.+.+-.-.    +|  ...+.+++.+.+.+.+.+.+      ....++|..+.++.
T Consensus         2 ilivDgGgTKT~~vl~d--~g~~i~~~~t~g~----Np--~~~~~~~~~~~l~~~~~~~l------~~~~~~i~~i~~g~   67 (107)
T d1zbsa2           2 ILIGDSGSTKTDWCIAK--EGKSLGRFQTSGI----NP--FQQDRNEIDTALRSEVLPAI------GQKASSIRAVYFYG   67 (107)
T ss_dssp             EEEEEECSSEEEEEEEE--TTEEEEEEEEECC----CT--TTSCHHHHHHHHTTTTHHHH------TTSTTTCCEEEEEE
T ss_pred             EEEEEeccccEEEEEEC--CCCeEEEEecCCc----Cc--ccCCHHHHHHHHHHHHHHHH------hccccCCcEEEEEe
Confidence            68899999999998877  4788876543211    11  12455666665554433222      23457888888877


Q ss_pred             Cc
Q psy1582          95 QR   96 (129)
Q Consensus        95 ~~   96 (129)
                      .|
T Consensus        68 AG   69 (107)
T d1zbsa2          68 AG   69 (107)
T ss_dssp             TT
T ss_pred             cC
Confidence            65

>d1e4ft1 c.55.1.1 (T:7-199) Cell division protein FtsA {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Cell division protein FtsA
species: Thermotoga maritima [TaxId: 2336]

Probab=97.42  E-value=0.00052  Score=45.82  Aligned_cols=78  Identities=14%  Similarity=0.115  Sum_probs=49.4

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      .|+++||||+++++++++...++  ++++.+..+...  -..|. -.|.+...+.+.++++++-+.   +|........+
T Consensus         2 ~~~~aiDIGs~kI~~~v~~~~~~~~~iig~~~~~s~G--i~~G~-I~d~~~~~~~I~~~I~~aE~~---a~~~i~~~v~v   75 (193)
T d1e4ft1           2 VFYTSIDIGSRYIKGLVLGKRDQEWEALAFSSVKSRG--LDEGE-IKDAIAFKESVNTLLKELEEQ---LQKSLRSDFVI   75 (193)
T ss_dssp             EEEEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCS--EETTE-ESCHHHHHHHHHHHHHHHHHH---HTSCCCSCEEE
T ss_pred             cEEEEEEcCCCEEEEEEEEEcCCcEEEEEEEEEecCC--ccCCe-EEeHHHHHHHHHHHHHHHHHH---cCCCeeeEEEE
Confidence            48999999999999998865344  445555444321  12342 347887777787777776554   56554333446


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      ++++..
T Consensus        76 ~~~~~~   81 (193)
T d1e4ft1          76 SFSSVS   81 (193)
T ss_dssp             EECCTT
T ss_pred             EEcCce
Confidence            666554

>d1v4sa1 c.55.1.3 (A:14-218) Glucokinase {Human (Homo sapiens) [TaxId: 9606]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Hexokinase
domain: Glucokinase
species: Human (Homo sapiens) [TaxId: 9606]

Probab=97.40  E-value=0.00022  Score=48.66  Aligned_cols=67  Identities=13%  Similarity=0.132  Sum_probs=42.2

Q ss_pred             cCCCCCCCeEEEEeCCCCceeEEEEeCCCCc----EEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582           6 PQAVAPTQIRDRLSATYHTSRVLIISALTQE----EVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus         6 ~~~~~~~~~~lgiDiGtt~ik~~l~d~~~g~----iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      |.+.. .+-+++||+|+|+.|+++++...++    .+...+..++.  |.. ......+++++.+.+++.+.+.+
T Consensus        53 PtG~E-~G~flalDlGGTn~Rv~~V~L~~~~~~~~~~~~~~~~~~i--p~~-~~~~t~~~LFd~iA~~i~~fl~~  123 (205)
T d1v4sa1          53 PEGSE-VGDFLSLDLGGTNFRVMLVKVGEGEEGQWSVKTKHQMYSI--PED-AMTGTAEMLFDYISECISDFLDK  123 (205)
T ss_dssp             CCCCC-CEEEEEEEESSSEEEEEEEEECCCSSSCCEEEEEEEEEEC--CST-TTSSBHHHHHHHHHHHHHHHHHT
T ss_pred             CCCcc-cceEEEEecCCceEEEEEEEeCCCCCCCceeEEEeecccC--Chh-hccCCHHHHHHHHHHHHHHHHHh
Confidence            44443 3567999999999999999972221    12222222322  111 11235678999999999999875

>d3bzka5 c.55.3.13 (A:325-473) Transcriptional accessory factor Tex {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Tex RuvX-like domain-like
domain: Transcriptional accessory factor Tex
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=96.65  E-value=0.005  Score=39.67  Aligned_cols=31  Identities=13%  Similarity=0.128  Sum_probs=27.6

Q ss_pred             CCeEEEEeCC-CCceeEEEEeCCCCcEEEEEEe
Q psy1582          12 TQIRDRLSAT-YHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        12 ~~~~lgiDiG-tt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      .+.+||||=| .|.+|.+++|. +|+++....+
T Consensus         4 ~~~vlg~DPg~r~gck~AvlD~-~G~vld~~vi   35 (149)
T d3bzka5           4 PRATLGLDPGLRTGVKVAVVDA-TGKLLDTATV   35 (149)
T ss_dssp             SCCEEEEECCSTTCEEEEEECT-TSCEEEEEEE
T ss_pred             CceEEEECCCcccccEEEEECC-CCCEEEEEEE
Confidence            5679999999 89999999999 9999987655

>d3bexa1 c.55.1.13 (A:1-118) Type III pantothenate kinase, CoaX {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Thermotoga maritima [TaxId: 2336]

Probab=96.41  E-value=0.0038  Score=37.97  Aligned_cols=29  Identities=7%  Similarity=-0.083  Sum_probs=23.6

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDI   45 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~   45 (129)
                      .|.||||.|++|.++|+.  ++++...+.++
T Consensus         2 ~L~IDIGNT~ik~~l~~~--~~l~~~~~~~~   30 (118)
T d3bexa1           2 YLLVDVGNTHSVFSITED--GKTFRRWRLST   30 (118)
T ss_dssp             EEEEEECSSEEEEEEESS--SSSCEEEEEEC
T ss_pred             EEEEEECCCeEEEEEEEC--CEEEEEEEEcc
Confidence            588999999999999985  67777666555

>d1saza1 c.55.1.2 (A:1-172) butyrate kinase 2 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: butyrate kinase 2
species: Thermotoga maritima [TaxId: 2336]

Probab=96.32  E-value=0.0043  Score=40.88  Aligned_cols=73  Identities=11%  Similarity=0.059  Sum_probs=42.7

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      -+|.|..|+||+|++|||. + +.+..............   .....+-.+...+++.+++++   .+++.++|.+||--
T Consensus         3 kILViN~GSSSlK~alf~~-~-~~~~~~~i~~~~~e~~~---~~~i~d~~~~~~~~i~~~L~~---~~~~~~~i~avghR   74 (172)
T d1saza1           3 RILTINPGSTSTKLSIFED-E-RMVKMQNFSHSPDELGR---FQKILDQLEFREKIARQFVEE---TGYSLSSFSAFVSR   74 (172)
T ss_dssp             EEEEEEECSSEEEEEEEET-T-EEEEEEEEECCHHHHHT---CSSGGGGHHHHHHHHHHHHHT---TTCCGGGCSEEEEE
T ss_pred             EEEEEcCChHhheEEEEeC-C-CceeEEEEEEccccccc---cCcccchHHHHHHHHHHHHHH---cCCChhcCeEEEEC
Confidence            4799999999999999996 4 45655555443210000   000101122223344444444   67777889999877


Q ss_pred             c
Q psy1582          94 N   94 (129)
Q Consensus        94 ~   94 (129)
                      +
T Consensus        75 v   75 (172)
T d1saza1          75 G   75 (172)
T ss_dssp             C
T ss_pred             c
Confidence            6

>d1nbwa2 c.55.1.6 (A:2-91,A:257-405) ATPase domain of the glycerol dehydratase reactivase alpha subunit {Klebsiella pneumoniae [TaxId: 573]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: ATPase domain of the glycerol dehydratase reactivase alpha subunit
species: Klebsiella pneumoniae [TaxId: 573]

Probab=95.92  E-value=0.011  Score=40.78  Aligned_cols=74  Identities=15%  Similarity=0.183  Sum_probs=48.7

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCC--cEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQ--EEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g--~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      ++++|+|||++++++++....++  ++++....+..-.  + |.. .|.    +.+.+++++++++   ++....++..+
T Consensus         1 pii~glDIGtski~~~v~~~~~~~~~ilg~g~~~s~Gi--K-G~I-~ni----~~~~~aI~~av~~---A~~~~~~i~~i   69 (239)
T d1nbwa2           1 PLIAGIDIGNATTEVALASDYPQARAFVASGIVATTGM--K-GTR-DNI----AGTLAALEQALAK---TPWSMSDVSRI   69 (239)
T ss_dssp             CEEEEEEECSSEEEEEEEECBTTBCCCCEEEEEECCSS--T-TSG-GGH----HHHHHHHHHHHTT---SSCCGGGEEEE
T ss_pred             CEEEEEEcCCCeEEEEEEEEcCCCEEEEEEEeecCCCC--c-ceE-ECH----HHHHHHHHHHHHH---hccccccceEE
Confidence            46899999999999999986322  4666666654322  2 322 233    4455666677665   67777788887


Q ss_pred             EEecCcc
Q psy1582          91 GITNQRE   97 (129)
Q Consensus        91 gis~~~~   97 (129)
                      -+....+
T Consensus        70 ~in~a~~   76 (239)
T d1nbwa2          70 YLNEAAP   76 (239)
T ss_dssp             EEEECCC
T ss_pred             EecCCcc
Confidence            7776543

>d1u6za2 c.55.1.8 (A:12-135) Exopolyphosphatase Ppx {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Escherichia coli [TaxId: 562]

Probab=95.55  E-value=0.055  Score=33.29  Aligned_cols=77  Identities=9%  Similarity=0.083  Sum_probs=45.0

Q ss_pred             EEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccc--cCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQE--EVVSHSMDISTI--SPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~--~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +.+||||+.++|..+++..++.  ++...+.++.+.  ....|  ..+++ -.+.+.+++++..+.++  .....++.++
T Consensus         2 ~A~IDiGSNsirl~I~~~~~~~~~~l~~~~~~~rLg~~~~~~g--~l~~~-~i~~~~~~l~~f~~~~~--~~~v~~i~~v   76 (124)
T d1u6za2           2 FAAVDLGSNSFHMVIARVVDGAMQIIGRLKQRVHLADGLGPDN--MLSEE-AMTRGLNCLSLFAERLQ--GFSPASVCIV   76 (124)
T ss_dssp             EEEEEECSSCEEEEEEEEETTEEEEEEEEEECCCTGGGBCTTC--CBCHH-HHHHHHHHHHHHHHHTT--TCCGGGEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCCeeEeeeeeEEeehhhhccccC--CcCHH-HHHHHHHHHHHHHHHHH--hcCcceehhh
Confidence            5789999999999999973443  333334333321  12233  22333 35566677777665532  3345678877


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      |.+..+
T Consensus        77 aTsA~R   82 (124)
T d1u6za2          77 GTHTLR   82 (124)
T ss_dssp             ECHHHH
T ss_pred             HHHHHH
Confidence            776543

>d2e1za1 c.55.1.2 (A:4-192) Propionate kinase {Salmonella typhimurium [TaxId: 90371]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Propionate kinase
species: Salmonella typhimurium [TaxId: 90371]

Probab=95.23  E-value=0.073  Score=35.19  Aligned_cols=32  Identities=6%  Similarity=0.084  Sum_probs=25.8

Q ss_pred             CeEEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          13 QIRDRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        13 ~~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      +++|.|..|+||+|+.||+..+.+++.+...+
T Consensus         2 plILviN~GSSSlK~~lf~~~~~~~l~~g~~e   33 (189)
T d2e1za1           2 PVVLVINCGSSSIKFSVLDVATCDVLMAGIAD   33 (189)
T ss_dssp             CEEEEEEECSSEEEEEEEETTTCCEEEEEEEE
T ss_pred             CEEEEEcCCchhheEEEEeCCCCcEEEEeeee
Confidence            57899999999999999996466777665543

>d1t6ca1 c.55.1.8 (A:7-132) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=95.12  E-value=0.049  Score=33.63  Aligned_cols=77  Identities=6%  Similarity=0.026  Sum_probs=43.2

Q ss_pred             EEEEeCCCCceeEEEEeCCCCc--EEEEEEeeeccccC--CCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQE--EVVSHSMDISTISP--QEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTL   90 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~--iv~~~~~~~~~~~~--~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~I   90 (129)
                      +..||||+.++|..+++.+++.  ++.+.+.+..+-..  ..|.  .+++ -.+.+.+++++..+.+++.+  .+++.++
T Consensus         5 iavIDIGSNsirl~I~~~~~~~~~~l~~~~~~~~Lg~~~~~~g~--ls~~-~i~~~~~~l~~f~~~~~~~~--v~~~~~v   79 (126)
T d1t6ca1           5 VASIDIGSYSVRLTIAQIKDGKLSIILERGRITSLGTKVKETGR--LQED-RIEETIQVLKEYKKLIDEFK--VERVKAV   79 (126)
T ss_dssp             EEEEEECSSEEEEEEEEEETTEEEEEEEEEEECCTTTTHHHHSS--CCHH-HHHHHHHHHHHHHHHHHHTT--CSEEEEE
T ss_pred             EEEEEEccceEEEEEEEecCCcceeeeeeeEEEEcccCccccCC--CCHH-HHHHHHHHHHHHHHHHHhcC--ccceEEe
Confidence            6889999999999999973333  23333333322100  1121  2333 34566666666655443333  4667777


Q ss_pred             EEecCc
Q psy1582          91 GITNQR   96 (129)
Q Consensus        91 gis~~~   96 (129)
                      +.+..+
T Consensus        80 aTsA~R   85 (126)
T d1t6ca1          80 ATEAIR   85 (126)
T ss_dssp             ECHHHH
T ss_pred             hhHHHH
Confidence            766543

>d2d0oa2 c.55.1.6 (A:1-92,A:255-403) Diol dehydratase-reactivating factor large subunit DdrA {Klebsiella oxytoca [TaxId: 571]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: ATPase domain of dehydratase reactivase alpha subunit
domain: Diol dehydratase-reactivating factor large subunit DdrA
species: Klebsiella oxytoca [TaxId: 571]

Probab=95.07  E-value=0.047  Score=36.91  Aligned_cols=70  Identities=11%  Similarity=0.123  Sum_probs=42.7

Q ss_pred             CCeEEEEeCCCCceeEEEEeCC-CCcEE--EEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCee
Q psy1582          12 TQIRDRLSATYHTSRVLIISAL-TQEEV--VSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIV   88 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~-~g~iv--~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~   88 (129)
                      ++|++|||||.+++.++|-... .|++-  .+.-.++.      | ..-..+. ..-+..++++++++   .+.+.+++.
T Consensus         1 M~~IaGiDIGNstTEvala~v~~~g~~~fl~S~i~~TT------G-iKGT~~N-i~Gv~~aL~~al~k---~g~~~~d~~   69 (241)
T d2d0oa2           1 MRYIAGIDIGNSSTEVALATLDEAGALTITHSALAETT------G-IKGTLRN-VFGIQEALALVARG---AGIAVSDIS   69 (241)
T ss_dssp             CEEEEEEEECSSEEEEEEEEECTTCCEEEEEEEEEECC------S-STTSTTH-HHHHHHHHHHHHHH---HTCCGGGEE
T ss_pred             CceEEEEecCcchhhhheeeecCCCcEEEEeccccccc------c-ccccHHH-HHHHHHHHHHHHHH---cCCCHHHhh
Confidence            4689999999999999998842 45533  33333332      1 0111222 23456666777766   688877766


Q ss_pred             EEEE
Q psy1582          89 TLGI   92 (129)
Q Consensus        89 ~Igi   92 (129)
                      -|-|
T Consensus        70 lIri   73 (241)
T d2d0oa2          70 LIRI   73 (241)
T ss_dssp             EEEE
T ss_pred             eeee
Confidence            5544

>d1okja1 c.55.1.9 (A:1-106) Hypothetical protein YeaZ {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein YeaZ
species: Escherichia coli [TaxId: 562]

Probab=94.62  E-value=0.038  Score=33.07  Aligned_cols=64  Identities=9%  Similarity=0.082  Sum_probs=43.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEec
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITN   94 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~   94 (129)
                      +|+||-.+..+.++|++.  ++++..... ...         .-.+    .+...+++++++   +++++++|.+|.++.
T Consensus         2 iLaIdTS~~~~sval~~~--~~i~~~~~~-~~~---------~h~~----~l~~~i~~~l~~---~~~~~~di~~i~v~~   62 (106)
T d1okja1           2 ILAIDTATEACSVALWND--GTVNAHFEL-CPR---------EHTQ----RILPMVQDILTT---SGTSLTDINALAYGR   62 (106)
T ss_dssp             EEEEECSSSEEEEEEEET--TEEEEEEEE-CCS---------STTT----THHHHHHHHHHH---TTCCGGGCCEEEEEE
T ss_pred             EEEEECCCcceEEEEEEC--CEEEEEEEE-ccH---------HHHH----HHHHHHHHHHHh---cCCcceeeeEEEEee
Confidence            689999999999999984  677654322 110         1112    344456677766   788889999988875


Q ss_pred             Ccce
Q psy1582          95 QRET   98 (129)
Q Consensus        95 ~~~g   98 (129)
                       |||
T Consensus        63 -GPG   65 (106)
T d1okja1          63 -GPG   65 (106)
T ss_dssp             -ESS
T ss_pred             -ccC
Confidence             454

>d2f9wa2 c.55.1.13 (A:1-114) Type III pantothenate kinase, CoaX {Pseudomonas aeruginosa [TaxId: 287]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: CoaX-like
domain: Type III pantothenate kinase, CoaX
species: Pseudomonas aeruginosa [TaxId: 287]

Probab=94.43  E-value=0.04  Score=32.95  Aligned_cols=28  Identities=11%  Similarity=0.051  Sum_probs=21.7

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEee
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSMD   44 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~   44 (129)
                      .|.||+|.|++|.++++.  .+.+......
T Consensus         2 ~LliDiGNT~iK~~~~~~--~~~~~~~~~~   29 (114)
T d2f9wa2           2 ILELDCGNSLIKWRVIEG--AARSVAGGLA   29 (114)
T ss_dssp             EEEEEECSSCEEEEEEET--TTEEEEEEEE
T ss_pred             EEEEEECCCeEEEEEEEC--CeEEEEeeee
Confidence            588999999999999996  4556554443

>d1bupa1 c.55.1.1 (A:4-188) Heat shock protein 70kDa, ATPase fragment {Cow (Bos taurus) [TaxId: 9913]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Cow (Bos taurus) [TaxId: 9913]

Probab=94.23  E-value=0.013  Score=38.28  Aligned_cols=18  Identities=11%  Similarity=-0.092  Sum_probs=16.6

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      ++|||+|||++++++++.
T Consensus         3 vvGIDfGTt~s~va~~~~   20 (185)
T d1bupa1           3 AVGIDLGSTYSCVGVFQH   20 (185)
T ss_dssp             CEEEEECSSEEEEEEEET
T ss_pred             EEEEEcChhcEEEEEEEC
Confidence            699999999999999985

>d1jcea1 c.55.1.1 (A:4-140) Prokaryotic actin homolog MreB {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Prokaryotic actin homolog MreB
species: Thermotoga maritima [TaxId: 2336]

Probab=93.59  E-value=0.015  Score=36.08  Aligned_cols=23  Identities=9%  Similarity=-0.071  Sum_probs=17.2

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVV   39 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~   39 (129)
                      .||||+|||++.+++.+  ++.++.
T Consensus         2 ~iGIDlGTtns~va~~~--~~~v~~   24 (137)
T d1jcea1           2 DIGIDLGTANTLVFLRG--KGIVVN   24 (137)
T ss_dssp             EEEEEECSSEEEEEETT--TEEEEE
T ss_pred             eEEEEcChhhEEEEEeC--CCEEee
Confidence            58999999999977644  455544

>d1dkgd1 c.55.1.1 (D:3-185) Heat shock protein 70kDa, ATPase fragment {Escherichia coli, gene dnaK [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Heat shock protein 70kDa, ATPase fragment
species: Escherichia coli, gene dnaK [TaxId: 562]

Probab=93.46  E-value=0.019  Score=37.48  Aligned_cols=18  Identities=17%  Similarity=0.036  Sum_probs=16.3

Q ss_pred             EEEEeCCCCceeEEEEeC
Q psy1582          15 RDRLSATYHTSRVLIISA   32 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~   32 (129)
                      +||||+|||++.+++++.
T Consensus         2 VvGIDfGTt~s~va~~~~   19 (183)
T d1dkgd1           2 IIGIDLGTTNSCVAIMDG   19 (183)
T ss_dssp             CCEEECCSSEEEEEEEET
T ss_pred             EEEEEcChhcEEEEEEEC
Confidence            589999999999998874

>d1g99a1 c.55.1.2 (A:1-197) Acetate kinase {Archaeon Methanosarcina thermophila [TaxId: 2210]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Acetokinase-like
domain: Acetate kinase
species: Archaeon Methanosarcina thermophila [TaxId: 2210]

Probab=92.58  E-value=0.12  Score=34.24  Aligned_cols=29  Identities=7%  Similarity=-0.015  Sum_probs=23.7

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEEEEEEe
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEVVSHSM   43 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv~~~~~   43 (129)
                      +|.|..|+||+|++|||..+.+.+.+...
T Consensus         3 ILViN~GSSS~K~alf~~~~~~~l~~g~~   31 (197)
T d1g99a1           3 VLVINAGSSSLKYQLIDMTNESALAVGLC   31 (197)
T ss_dssp             EEEEEECSSCEEEEEEETTTTEEEEEEEE
T ss_pred             EEEEcCChHhheeEEEECCCCcEEEEeEE
Confidence            79999999999999999645666666554

>d1hjra_ c.55.3.6 (A:) RuvC resolvase {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: RuvC resolvase
domain: RuvC resolvase
species: Escherichia coli [TaxId: 562]

Probab=91.68  E-value=0.49  Score=29.94  Aligned_cols=53  Identities=11%  Similarity=0.067  Sum_probs=34.0

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcE---EEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHH
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEE---VVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEK   76 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~i---v~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~   76 (129)
                      ++||||-|++++=.+++|. +|..   +......++     +    .+..+=+..+.+.+.+++.+
T Consensus         2 iILGIDPGl~~~G~avid~-~~~~~~~v~~g~i~t~-----~----~~~~~Rl~~i~~~l~~li~~   57 (158)
T d1hjra_           2 IILGIDPGSRVTGYGVIRQ-VGRQLSYLGSGCIRTK-----V----DDLPSRLKLIYAGVTEIITQ   57 (158)
T ss_dssp             EEEEEECCSSEEEEEEEEE-ETTEEEEEEEEEEECC-----C----SCHHHHHHHHHHHHHHHHHH
T ss_pred             EEEEEccCCCceEEEEEEe-eCCEEEEEEeeEEeCC-----C----CChHHHHHHHHHHHHHHHhc
Confidence            6899999999999999998 6643   233333221     1    12223344566677777776

>d2a6aa1 c.55.1.9 (A:1-103) Hypothetical protein TM0874 {Thermotoga maritima [TaxId: 2336]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: YeaZ-like
domain: Hypothetical protein TM0874
species: Thermotoga maritima [TaxId: 2336]

Probab=91.15  E-value=0.58  Score=27.29  Aligned_cols=64  Identities=11%  Similarity=0.140  Sum_probs=38.5

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeeccccCCCCeEEECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEe
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDISTISPQEGWAEQDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGIT   93 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~~~~~~g~~~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis   93 (129)
                      .+|+||-. +.+.+++.+.   +.+.........         ...+    .+...+++++++   +++..++|..|.++
T Consensus         2 ~iLaidTS-~~~sval~~~---~~~~~~~~~~~~---------~hs~----~l~~~i~~~l~~---~~~~~~di~~i~v~   61 (103)
T d2a6aa1           2 NVLALDTS-QRIRIGLRKG---EDLFEISYTGEK---------KHAE----ILPVVVKKLLDE---LDLKVKDLDVVGVG   61 (103)
T ss_dssp             EEEEEECS-SSEEEEEEET---TEEEEEEEESCG---------GGGG----HHHHHHHHHHHH---HTCCGGGCSEEEEE
T ss_pred             cEEEEEcC-cccEEEEEEC---CEEEEEeccCch---------HHHH----HHHHHHHHHHHH---cCCCHHHhHHHhhc
Confidence            57999976 5677777764   334333322110         1122    344455666666   57888999999888


Q ss_pred             cCcce
Q psy1582          94 NQRET   98 (129)
Q Consensus        94 ~~~~g   98 (129)
                      . |||
T Consensus        62 ~-GPG   65 (103)
T d2a6aa1          62 I-GPG   65 (103)
T ss_dssp             C-CSS
T ss_pred             C-CCC
Confidence            5 555

>d1t6ca2 c.55.1.8 (A:133-312) Exopolyphosphatase Ppx {Aquifex aeolicus [TaxId: 63363]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Ppx/GppA phosphatase
domain: Exopolyphosphatase Ppx
species: Aquifex aeolicus [TaxId: 63363]

Probab=89.99  E-value=0.12  Score=33.56  Aligned_cols=32  Identities=6%  Similarity=-0.165  Sum_probs=26.7

Q ss_pred             eEEEEeCCCCceeEEEEeCCCCcEEEEEEeeecc
Q psy1582          14 IRDRLSATYHTSRVLIISALTQEEVVSHSMDIST   47 (129)
Q Consensus        14 ~~lgiDiGtt~ik~~l~d~~~g~iv~~~~~~~~~   47 (129)
                      -++.+|||+-|+-.++++  ++++....+.++..
T Consensus         4 ~~lviDIGGGStEli~~~--~~~i~~~~Sl~lG~   35 (180)
T d1t6ca2           4 EVCVVDQGGGSTEYVFGK--GYKVREVISLPIGI   35 (180)
T ss_dssp             EEEEEEEETTEEEEEEEE--TTEEEEEEEECCCH
T ss_pred             CEEEEEeCCChHhhEEee--CCceeeEEEeecce
Confidence            367899999999999998  47888888887753

>d1xhoa_ d.79.1.2 (A:) Chorismate mutase {Clostridium thermocellum [TaxId: 1515]}

class: Alpha and beta proteins (a+b)
fold: Bacillus chorismate mutase-like
superfamily: YjgF-like
family: Chorismate mutase
domain: Chorismate mutase
species: Clostridium thermocellum [TaxId: 1515]

Probab=85.26  E-value=0.87  Score=27.31  Aligned_cols=36  Identities=31%  Similarity=0.443  Sum_probs=32.3

Q ss_pred             ECHHHHHHHHHHHHHHHHHHHHhCCCCCCCeeEEEEecC
Q psy1582          57 QDPMEILQAVQTTMDRAIEKLSAHGLSRDDIVTLGITNQ   95 (129)
Q Consensus        57 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~I~~Igis~~   95 (129)
                      .++++++++..+++++++.+   +++++++|.+|=|+..
T Consensus        13 n~~e~I~~at~eLl~~ii~~---N~l~~edi~Sv~FT~T   48 (112)
T d1xhoa_          13 NTADEIVAETQKLLKEMAEK---NGLEEDDIISIIFTVT   48 (112)
T ss_dssp             SSHHHHHHHHHHHHHHHHHH---TTCCGGGEEEEEEEEC
T ss_pred             CCHHHHHHHHHHHHHHHHHH---cCCCHHHEEEEEEEec
Confidence            46899999999999999988   8999999999999875

>d1nu0a_ c.55.3.8 (A:) Hypothetical protein YqgF (RuvX) {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein YqgF (RuvX)
species: Escherichia coli [TaxId: 562]

Probab=85.00  E-value=1.3  Score=27.27  Aligned_cols=25  Identities=4%  Similarity=-0.137  Sum_probs=21.1

Q ss_pred             CCeEEEEeCCCCceeEEEEeCCCCcE
Q psy1582          12 TQIRDRLSATYHTSRVLIISALTQEE   37 (129)
Q Consensus        12 ~~~~lgiDiGtt~ik~~l~d~~~g~i   37 (129)
                      .+-+||||.|+-.+=.++-|. .+.+
T Consensus         2 ~griLgiD~G~kriGvAvsd~-~~~~   26 (138)
T d1nu0a_           2 SGTLMAFDFGTKSIGVAVGQR-ITGT   26 (138)
T ss_dssp             CCEEEEEECCSSEEEEEEEET-TTTE
T ss_pred             CCcEEEEEeCCCEEEEEEeCC-CCCc
Confidence            456899999999999999998 5543

>d2zgya1 c.55.1.1 (A:1-157) Plasmid segregation protein ParM {Escherichia coli [TaxId: 562]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Actin-like ATPase domain
family: Actin/HSP70
domain: Plasmid segregation protein ParM
species: Escherichia coli [TaxId: 562]

Probab=82.78  E-value=0.87  Score=28.70  Aligned_cols=23  Identities=0%  Similarity=-0.213  Sum_probs=19.4

Q ss_pred             EEEEeCCCCceeEEEEeCCCCcEE
Q psy1582          15 RDRLSATYHTSRVLIISALTQEEV   38 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~iv   38 (129)
                      +||||+|.+++|.+..+. +|++.
T Consensus         2 ~I~iD~Gy~nvK~a~~~~-~g~~~   24 (157)
T d2zgya1           2 LVFIDDGSTNIKLQWQES-DGTIK   24 (157)
T ss_dssp             EEEEEECSSEEEEEEECS-SSCEE
T ss_pred             EEEEecCCCcEEEEEecC-CCcEe
Confidence            689999999999997776 67654

>d1iv0a_ c.55.3.8 (A:) Hypothetical protein, YqgF homologue {Thermus thermophilus [TaxId: 274]}

class: Alpha and beta proteins (a/b)
fold: Ribonuclease H-like motif
superfamily: Ribonuclease H-like
family: Putative Holliday junction resolvase RuvX
domain: Hypothetical protein, YqgF homologue
species: Thermus thermophilus [TaxId: 274]

Probab=82.09  E-value=0.95  Score=26.26  Aligned_cols=21  Identities=5%  Similarity=-0.143  Sum_probs=18.5

Q ss_pred             EEEEeCCCCceeEEEEeCCCCc
Q psy1582          15 RDRLSATYHTSRVLIISALTQE   36 (129)
Q Consensus        15 ~lgiDiGtt~ik~~l~d~~~g~   36 (129)
                      +||||+|+..+=.++-|. .+.
T Consensus         3 iLglD~G~kriGiAisd~-~~~   23 (98)
T d1iv0a_           3 VGALDVGEARIGLAVGEE-GVP   23 (98)
T ss_dssp             EEEEEESSSEEEEEEECS-CCS
T ss_pred             EEEEEcCCCEEEEEEecC-CCC
Confidence            799999999999999997 553