Psyllid ID: psy15865

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Local Sequence Feature Prediction

Residue Number Marker
--------10--------20--------30--------40--------50--------60--------70--------80--------90-------100-------110-------120-------130-------140-------150------
Protein Sequence
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEKPAPGQIAPDGPPKNALTTNNNGV
Secondary Structure (PSIPRED)
cccccEEEEEEEEccccccccHHHHHHHHHHHHHHHHHHHHHHcHHHHHHHHHHHHHHHHHHHHHHHccccccHHHHHccccccHHHHHHHHHHHHHHHHccccccccccccccccEEEEcccccccccccccccccccccccccccccccccccc
Secondary Structure Prediction (SSPRO)
ccccEEEEEEEEEEcccccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccccHHHHcccccccHHHHHHHHHccEEEccccccccccEEcccHHEEEEEcccccccccccccccccccccccccccccccccccc
Coil and Loop (DISEMBL)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAlyfipesphwliskyLPIGLSALATSAKNMLLFSygttlglptiaipylsysikaipyqtagsgslekpapgqiapdgppknalttnnngv
Flexible Loop (DISEMBL)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEKPAPgqiapdgppknalttnnngv
Low Complexity Region (SEG)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEKPAPGQIAPDGPPKNALTTNNNGV
Disordered region (IsUnstruct)
****LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQ********************************
Disordered Region (DISOPRED)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGL**LATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKA************************************
Disordered Region (DISEMBL)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEKPAPGQIAPDGPPKNALTTNNNGV
Disordered Region (DISPRO)
*AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEK*******PDGPPKNA********
Transmembrane Helix (TMHMM)
oooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Transmembrane Helix (HMMTOP)
iiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooooo
Transmembrane Helix (MEMSAT)
iiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHHHHHHooooHHHHHHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiHHHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooooooooooooooooo
TM Helix, Signal Peptide (Phobius)
SSSSSSSSSSSSSSoooooooooHHHHHHHHHHHHHHHHHHHHHHiiiiiiHHHHHHHHHHHHHHHHHHoooooooooooooooooooooooooHHHHHHHHHHHHHHHHHHHHiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiiii
Signal Peptide (SignalP HMM Mode)
SSSSSSSSSSSSSSSSSSSooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooooo
Signal Peptide (SignalP NN Mode)
xxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxxx
Coiled Coils (COILS)
MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTTLGLPTIAIPYLSYSIKAIPYQTAGSGSLEKPAPGQIAPDGPPKNALTTNNNGV
Positional Conservation
no confident homologs detected

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Close Homologs for Annotation Transfer

Close Homologs in SWISS-PROT Database Detected by BLAST

Original result of BLAST against SWISS-PROT Database

ID	Length	Definition	RBH(Q2H)	RBH(H2Q)	Q cover	H cover	Identity	E-value
Query	156	2.2.26 [Sep-21-2011]
Q9SCW7	464	Sugar transporter ERD6-li	yes	N/A	0.429	0.144	0.402	5e-08
Q4F7G0	462	Sugar transporter ERD6-li	no	N/A	0.557	0.188	0.329	1e-07
Q8VZT3	462	Sugar transporter ERD6-li	no	N/A	0.448	0.151	0.371	1e-07
Q7XA64	327	Sugar transporter ERD6-li	no	N/A	0.429	0.204	0.358	2e-07
Q94CI7	474	Sugar transporter ERD6-li	no	N/A	0.423	0.139	0.378	4e-07
Q94CI6	478	Sugar transporter ERD6-li	no	N/A	0.429	0.140	0.388	4e-07
Q94AF9	467	Sugar transporter ERD6-li	no	N/A	0.429	0.143	0.373	5e-07
Q93Z80	458	Sugar transporter ERD6-li	no	N/A	0.429	0.146	0.388	8e-07
Q3ECP7	470	Sugar transporter ERD6-li	no	N/A	0.429	0.142	0.358	1e-06
B3NSE1	856	Facilitated trehalose tra	N/A	N/A	0.423	0.077	0.347	2e-06

>sp|Q9SCW7|ERDL1_ARATH Sugar transporter ERD6-like 1 OS=Arabidopsis thaliana GN=SUGTL4 PE=2 SV=2

 Score = 57.0 bits (136), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 27/67 (40%), Positives = 38/67 (56%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT    RG  S +  +   FG     F G+F HWR+ A+L+ +   + +  L+FI
Sbjct: 140 VYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICLFFI 199

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 200 PESPRWL 206

Sugar transporter.
Arabidopsis thaliana (taxid: 3702)

>sp|Q4F7G0|ERDL2_ARATH Sugar transporter ERD6-like 2 OS=Arabidopsis thaliana GN=SUGTL3 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 30/91 (32%), Positives = 44/91 (48%), Gaps = 4/91 (4%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT    RG  S +  +    G     F G+F HWR+ A+L+ +     +  L+FI
Sbjct: 138 VYIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICLFFI 197

Query: 70  PESPHWLI----SKYLPIGLSALATSAKNML 96
           PESP WL      + L + L  L     ++L
Sbjct: 198 PESPRWLAMYGQDQELEVSLKKLRGENSDIL 228

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q8VZT3|EDL12_ARATH Sugar transporter ERD6-like 12 OS=Arabidopsis thaliana GN=SUGTL5 PE=2 SV=1

 Score = 55.5 bits (132), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 26/70 (37%), Positives = 39/70 (55%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT  H+RG  + +  +    G     + G+FL WR+ AI+  +   + +  L+FI
Sbjct: 139 VYIAEITPKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGLFFI 198

Query: 70  PESPHWLISK 79
           PESP WL  K
Sbjct: 199 PESPRWLAKK 208

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q7XA64|ERDL9_ARATH Sugar transporter ERD6-like 9 OS=Arabidopsis thaliana GN=At3g05155 PE=2 SV=1

 Score = 54.7 bits (130), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 40/67 (59%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT   +RG  + +  +    G  +  +LG+F+ WR  A++ +L  ++ L  L+F+
Sbjct: 140 VYIAEITPKTVRGTFTFSNQLLQNCGVATAYYLGNFMSWRIIALIGILPCLIQLVGLFFV 199

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 200 PESPRWL 206

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI7|EDL17_ARATH Sugar transporter ERD6-like 17 OS=Arabidopsis thaliana GN=SFP1 PE=2 SV=2

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 25/66 (37%), Positives = 38/66 (57%)

Query: 11  YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIP 70
           Y+AEIT  H+RG  + +  +    G     F G+F+ WR+ A+L  L   + +  L+F+P
Sbjct: 145 YIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGLFFVP 204

Query: 71  ESPHWL 76
           ESP WL
Sbjct: 205 ESPRWL 210

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94CI6|EDL18_ARATH Sugar transporter ERD6-like 18 OS=Arabidopsis thaliana GN=SFP2 PE=2 SV=1

 Score = 53.9 bits (128), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEI+  H+RG  + T  +    G     F G+FL+WR  A+L  L   + +  L+F+
Sbjct: 148 VYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGLFFV 207

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 208 PESPRWL 214

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q94AF9|EDL11_ARATH Sugar transporter ERD6-like 11 OS=Arabidopsis thaliana GN=At3g05165 PE=2 SV=2

 Score = 53.5 bits (127), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 25/67 (37%), Positives = 38/67 (56%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT  H+RG  +A+  +    G     F G+ ++WR  A++  +  IL    ++FI
Sbjct: 143 VYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGIFFI 202

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 203 PESPRWL 209

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q93Z80|EDL10_ARATH Sugar transporter ERD6-like 10 OS=Arabidopsis thaliana GN=At3g05160 PE=2 SV=1

 Score = 52.8 bits (125), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 26/67 (38%), Positives = 38/67 (56%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT  H+RG  SA+  +    G     F G+ ++WR  A++  L   + +  +YFI
Sbjct: 134 VYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGIYFI 193

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 194 PESPRWL 200

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|Q3ECP7|ERDL5_ARATH Sugar transporter ERD6-like 5 OS=Arabidopsis thaliana GN=At1g54730 PE=2 SV=2

 Score = 52.0 bits (123), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 24/67 (35%), Positives = 36/67 (53%)

Query: 10  TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFI 69
            Y+AEIT   LRG  +    +    G      LGSF+ WR  A++ ++  ++ +  L+ I
Sbjct: 145 VYIAEITPKGLRGGFTTVHQLLICLGVSVTYLLGSFIGWRILALIGMIPCVVQMMGLFVI 204

Query: 70  PESPHWL 76
           PESP WL
Sbjct: 205 PESPRWL 211

Sugar transporter.

Arabidopsis thaliana (taxid: 3702)

>sp|B3NSE1|TRET1_DROER Facilitated trehalose transporter Tret1 OS=Drosophila erecta GN=Tret1 PE=3 SV=1

 Score = 52.0 bits (123), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 25/72 (34%), Positives = 37/72 (51%), Gaps = 6/72 (8%)

Query: 11  YVAEITQPHLRGMLSATASMTTIFGTVSQLFL---GSFLHWRSAAILNLLFPILALCALY 67
           Y+ E  QP +RG L     + T FG +  L     GSF++W   A L    P+  L  ++
Sbjct: 513 YLGETVQPEVRGTLGL---LPTAFGNIGILLCFVAGSFMNWSMLAFLGAALPVPFLILMF 569

Query: 68  FIPESPHWLISK 79
            IPE+P W +S+
Sbjct: 570 LIPETPRWFVSR 581

Low-capacity facilitative transporter for trehalose. Does not transport maltose, sucrose or lactose. Mediates the bidirectional transfer of trehalose. Responsible for the transport of trehalose synthesized in the fat body and the incorporation of trehalose into other tissues that require a carbon source, thereby regulating trehalose levels in the hemolymph.

Drosophila erecta (taxid: 7220)

Close Homologs in the Non-Redundant Database Detected by BLAST

Original result of BLAST against Nonredundant Database

GI	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
357619316	540	putative sugar transporter [Danaus plexi	0.455	0.131	0.583	7e-19
307176944	517	Sugar transporter ERD6-like 6 [Camponotu	0.461	0.139	0.597	7e-19
332016797	531	Sugar transporter ERD6-like 2 [Acromyrme	0.461	0.135	0.597	7e-19
291461585	544	sugar transporter 13 [Nilaparvata lugens	0.461	0.132	0.652	8e-19
242020658	545	conserved hypothetical protein [Pediculu	0.461	0.132	0.597	1e-18
193688235	560	PREDICTED: facilitated trehalose transpo	0.461	0.128	0.569	2e-18
91082977	1252	PREDICTED: similar to sugar transporter	0.461	0.057	0.611	2e-18
270007037	1229	hypothetical protein TcasGA2_TC013484 [T	0.461	0.058	0.611	3e-18
307207615	526	Sugar transporter ERD6-like 7 [Harpegnat	0.461	0.136	0.583	1e-17
322800186	588	hypothetical protein SINV_08656 [Solenop	0.461	0.122	0.583	1e-17

>gi|357619316|gb|EHJ71940.1| putative sugar transporter [Danaus plexippus]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 56/72 (77%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAEITQPHLRG L+AT+SM  I G  +Q   G  ++WR+ A++N+ F ++A+ AL+
Sbjct: 141 VLTYVAEITQPHLRGALTATSSMCIIIGVFTQFLFGLLMYWRTVALVNIFFALIAILALF 200

Query: 68  FIPESPHWLISK 79
           FIPESPHWL+ K
Sbjct: 201 FIPESPHWLVMK 212

Source: Danaus plexippus

Species: Danaus plexippus

Genus: Danaus

Family: Nymphalidae

Order: Lepidoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307176944|gb|EFN66250.1| Sugar transporter ERD6-like 6 [Camponotus floridanus]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 57/72 (79%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAE+TQP+LRGMLSAT+SM+ I G  +Q+  GS  HWR+ A++NL++PI+   AL 
Sbjct: 147 VLTYVAEVTQPNLRGMLSATSSMSVILGIFTQMLSGSLAHWRTVAMINLIYPIICFFALC 206

Query: 68  FIPESPHWLISK 79
            +PESPHWL +K
Sbjct: 207 LVPESPHWLAAK 218

Source: Camponotus floridanus

Species: Camponotus floridanus

Genus: Camponotus

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|332016797|gb|EGI57618.1| Sugar transporter ERD6-like 2 [Acromyrmex echinatior]

 Score = 98.6 bits (244), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 56/72 (77%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           V+TYVAE+TQP+LRGMLSAT+SM  I G  +Q+  GS +HWR+ A++NL++PIL   AL 
Sbjct: 70  VITYVAEVTQPYLRGMLSATSSMAVILGIFTQMLSGSLVHWRTVALINLIYPILCFLALC 129

Query: 68  FIPESPHWLISK 79
            +PESPHWL  K
Sbjct: 130 LVPESPHWLAVK 141

Source: Acromyrmex echinatior

Species: Acromyrmex echinatior

Genus: Acromyrmex

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|291461585|dbj|BAI83427.1| sugar transporter 13 [Nilaparvata lugens]

 Score = 98.6 bits (244), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 47/72 (65%), Positives = 55/72 (76%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAEIT P LRGMLSATASM  I G   Q   G+FL WR+ A++N+ FPILA+ ALY
Sbjct: 170 VLTYVAEITTPQLRGMLSATASMIVILGVFIQFIFGTFLPWRTIALVNVTFPILAIIALY 229

Query: 68  FIPESPHWLISK 79
            +PESPHWL+ K
Sbjct: 230 GVPESPHWLMGK 241

Source: Nilaparvata lugens

Species: Nilaparvata lugens

Genus: Nilaparvata

Family: Delphacidae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|242020658|ref|XP_002430769.1| conserved hypothetical protein [Pediculus humanus corporis] gi|212515966|gb|EEB18031.1| conserved hypothetical protein [Pediculus humanus corporis]

 Score = 97.8 bits (242), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 43/72 (59%), Positives = 58/72 (80%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           +LTYVAEITQPH+RG+LSA++S++ I GT +Q F+G+F  WR+ + +N   PI+A  AL 
Sbjct: 139 ILTYVAEITQPHVRGILSASSSLSVILGTFTQFFMGNFWDWRTLSAVNTSAPIIAFIALC 198

Query: 68  FIPESPHWLISK 79
           FIPESPHWLIS+
Sbjct: 199 FIPESPHWLISR 210

Source: Pediculus humanus corporis

Species: Pediculus humanus

Genus: Pediculus

Family: Pediculidae

Order: Phthiraptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|193688235|ref|XP_001945235.1| PREDICTED: facilitated trehalose transporter Tret1-like [Acyrthosiphon pisum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 41/72 (56%), Positives = 55/72 (76%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAEIT+PH+RG+L+A +S T I G++SQ  LG+F HWR   + N + P++A  +L 
Sbjct: 188 VLTYVAEITEPHIRGVLAALSSTTVILGSISQFILGNFFHWRKIVLFNTIVPVVAFISLL 247

Query: 68  FIPESPHWLISK 79
            IPESPHWLI+K
Sbjct: 248 LIPESPHWLITK 259

Source: Acyrthosiphon pisum

Species: Acyrthosiphon pisum

Genus: Acyrthosiphon

Family: Aphididae

Order: Hemiptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|91082977|ref|XP_974017.1| PREDICTED: similar to sugar transporter [Tribolium castaneum]

 Score = 97.1 bits (240), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 55/72 (76%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAEITQPHLRGMLS+T++M  I G + Q  LG+FL+WR   + N +FPI+A   L 
Sbjct: 144 VLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWRLVTLCNCVFPIVAFVLLI 203

Query: 68  FIPESPHWLISK 79
           F+PE+P WLISK
Sbjct: 204 FVPETPIWLISK 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|270007037|gb|EFA03485.1| hypothetical protein TcasGA2_TC013484 [Tribolium castaneum]

 Score = 96.7 bits (239), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 44/72 (61%), Positives = 55/72 (76%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAEITQPHLRGMLS+T++M  I G + Q  LG+FL+WR   + N +FPI+A   L 
Sbjct: 144 VLTYVAEITQPHLRGMLSSTSTMAVILGVLVQFLLGTFLNWRLVTLCNCVFPIVAFVLLI 203

Query: 68  FIPESPHWLISK 79
           F+PE+P WLISK
Sbjct: 204 FVPETPIWLISK 215

Source: Tribolium castaneum

Species: Tribolium castaneum

Genus: Tribolium

Family: Tenebrionidae

Order: Coleoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|307207615|gb|EFN85275.1| Sugar transporter ERD6-like 7 [Harpegnathos saltator]

 Score = 94.7 bits (234), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 56/72 (77%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           VLTYVAE+TQPHLRGMLSAT+S++ I G  +Q+  GS  HWR+ A++NL +PIL+  +L 
Sbjct: 149 VLTYVAEVTQPHLRGMLSATSSLSVILGVFTQMLSGSLAHWRTVALVNLAYPILSFLSLC 208

Query: 68  FIPESPHWLISK 79
            +PESP+WL  K
Sbjct: 209 LMPESPYWLAVK 220

Source: Harpegnathos saltator

Species: Harpegnathos saltator

Genus: Harpegnathos

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

>gi|322800186|gb|EFZ21271.1| hypothetical protein SINV_08656 [Solenopsis invicta]

 Score = 94.4 bits (233), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 42/72 (58%), Positives = 54/72 (75%)

Query: 8   VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
           V+TYVAE+TQP+LRGMLSAT+SM  I G  +Q+  GS + WR+ A++NL +PIL   AL 
Sbjct: 152 VITYVAEVTQPYLRGMLSATSSMAVILGIFTQMLSGSLVDWRTVALINLTYPILCFLALC 211

Query: 68  FIPESPHWLISK 79
            +PESPHWL  K
Sbjct: 212 LVPESPHWLAVK 223

Source: Solenopsis invicta

Species: Solenopsis invicta

Genus: Solenopsis

Family: Formicidae

Order: Hymenoptera

Class: Insecta

Phylum: Arthropoda

Superkingdom: Eukaryota

---

Prediction of Gene Ontology (GO) Terms

Close Homologs with Gene Ontology terms Detected by BLAST

Original result of BLAST against Gene Ontology (AMIGO)

ID	Length	Definition	Q cover	H cover	Identity	E-value
Query	156
FB|FBgn0051100	716	CG31100 [Drosophila melanogast	0.474	0.103	0.506	1.2e-13
TAIR|locus:2079802	462	AT3G05400 [Arabidopsis thalian	0.467	0.158	0.369	7.4e-10
TAIR|locus:2036039	464	AT1G08890 [Arabidopsis thalian	0.448	0.150	0.4	8.9e-09
TAIR|locus:504955729	327	AT3G05155 [Arabidopsis thalian	0.448	0.214	0.357	1.2e-08
TAIR|locus:2096234	458	AT3G05160 [Arabidopsis thalian	0.448	0.152	0.385	1.8e-08
TAIR|locus:2036009	462	AT1G08900 [Arabidopsis thalian	0.448	0.151	0.385	1.9e-08
TAIR|locus:2146365	478	SFP2 [Arabidopsis thaliana (ta	0.448	0.146	0.385	2e-08
TAIR|locus:2146350	474	SFP1 [Arabidopsis thaliana (ta	0.448	0.147	0.371	3.2e-08
TAIR|locus:505006329	467	AT3G05165 [Arabidopsis thalian	0.448	0.149	0.371	5.1e-08
TAIR|locus:2025132	487	ERDL6 "ERD6-like 6" [Arabidops	0.442	0.141	0.391	7e-08

FB|FBgn0051100 CG31100 [Drosophila melanogaster (taxid:7227)]

 Score = 188 (71.2 bits), Expect = 1.2e-13, P = 1.2e-13
 Identities = 39/77 (50%), Positives = 49/77 (63%)

Query:     1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPI 60
             M AP   VLTYVAEIT+P  RG+LSA  +   I G   Q  LGS + WRS A ++  FP+
Sbjct:   166 MEAP---VLTYVAEITEPKYRGILSALGTTCVITGVFIQFILGSLMDWRSVAAVSSAFPV 222

Query:    61 LALCALYFIPESPHWLI 77
             + +  L F+PESP WLI
Sbjct:   223 ITIIMLCFVPESPVWLI 239

GO:0016021 "integral to membrane" evidence=ISS

GO:0015145 "monosaccharide transmembrane transporter activity" evidence=ISS

GO:0015749 "monosaccharide transport" evidence=ISS

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2079802 AT3G05400 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 7.4e-10, Sum P(2) = 7.4e-10
 Identities = 27/73 (36%), Positives = 41/73 (56%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT  H+RG  + +  +    G     + G+FL WR+ AI+  +   + +  L
Sbjct:   136 VVPVYIAEITPKHVRGAFTFSNQLLQNCGVAVVYYFGNFLSWRTLAIIGSIPCWIQVIGL 195

Query:    67 YFIPESPHWLISK 79
             +FIPESP WL  K
Sbjct:   196 FFIPESPRWLAKK 208

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036039 AT1G08890 [Arabidopsis thaliana (taxid:3702)]

 Score = 140 (54.3 bits), Expect = 8.9e-09, P = 8.9e-09
 Identities = 28/70 (40%), Positives = 40/70 (57%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT    RG  S +  +   FG     F G+F HWR+ A+L+ +   + +  L
Sbjct:   137 VVPVYIAEITPKAFRGGFSFSNQLLQSFGISLMFFTGNFFHWRTLALLSAIPCGIQMICL 196

Query:    67 YFIPESPHWL 76
             +FIPESP WL
Sbjct:   197 FFIPESPRWL 206

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009507 "chloroplast" evidence=IDA

TAIR|locus:504955729 AT3G05155 [Arabidopsis thaliana (taxid:3702)]

 Score = 136 (52.9 bits), Expect = 1.2e-08, P = 1.2e-08
 Identities = 25/70 (35%), Positives = 42/70 (60%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT   +RG  + +  +    G  +  +LG+F+ WR  A++ +L  ++ L  L
Sbjct:   137 VVPVYIAEITPKTVRGTFTFSNQLLQNCGVATAYYLGNFMSWRIIALIGILPCLIQLVGL 196

Query:    67 YFIPESPHWL 76
             +F+PESP WL
Sbjct:   197 FFVPESPRWL 206

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2096234 AT3G05160 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.8e-08, P = 1.8e-08
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT  H+RG  SA+  +    G     F G+ ++WR  A++  L   + +  +
Sbjct:   131 VVPVYIAEITPKHVRGAFSASTLLLQNSGISLIYFFGTVINWRVLAVIGALPCFIPVIGI 190

Query:    67 YFIPESPHWL 76
             YFIPESP WL
Sbjct:   191 YFIPESPRWL 200

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2036009 AT1G08900 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 1.9e-08, P = 1.9e-08
 Identities = 27/70 (38%), Positives = 38/70 (54%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT    RG  S +  +    G     F G+F HWR+ A+L+ +     +  L
Sbjct:   135 VVPVYIAEITPKTFRGGFSYSNQLLQCLGISLMFFTGNFFHWRTLALLSAIPSAFQVICL 194

Query:    67 YFIPESPHWL 76
             +FIPESP WL
Sbjct:   195 FFIPESPRWL 204

GO:0005215 "transporter activity" evidence=IEA

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146365 SFP2 [Arabidopsis thaliana (taxid:3702)]

 Score = 137 (53.3 bits), Expect = 2.0e-08, P = 2.0e-08
 Identities = 27/70 (38%), Positives = 40/70 (57%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEI+  H+RG  + T  +    G     F G+FL+WR  A+L  L   + +  L
Sbjct:   145 VVPVYIAEISPKHVRGTFTFTNQLLQNSGLAMVYFSGNFLNWRILALLGALPCFIQVIGL 204

Query:    67 YFIPESPHWL 76
             +F+PESP WL
Sbjct:   205 FFVPESPRWL 214

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2146350 SFP1 [Arabidopsis thaliana (taxid:3702)]

 Score = 135 (52.6 bits), Expect = 3.2e-08, P = 3.2e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT  H+RG  + +  +    G     F G+F+ WR+ A+L  L   + +  L
Sbjct:   141 VVPVYIAEITPKHVRGTFTFSNQLLQNAGLAMIYFCGNFITWRTLALLGALPCFIQVIGL 200

Query:    67 YFIPESPHWL 76
             +F+PESP WL
Sbjct:   201 FFVPESPRWL 210

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

GO:0009624 "response to nematode" evidence=IEP

GO:0010167 "response to nitrate" evidence=RCA

GO:0015706 "nitrate transport" evidence=RCA

TAIR|locus:505006329 AT3G05165 [Arabidopsis thaliana (taxid:3702)]

 Score = 133 (51.9 bits), Expect = 5.1e-08, P = 5.1e-08
 Identities = 26/70 (37%), Positives = 40/70 (57%)

Query:     7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL 66
             +V  Y+AEIT  H+RG  +A+  +    G     F G+ ++WR  A++  +  IL    +
Sbjct:   140 VVPVYIAEITPKHVRGAFTASNQLLQNSGVSLIYFFGTVINWRVMAVIGAIPCILQTIGI 199

Query:    67 YFIPESPHWL 76
             +FIPESP WL
Sbjct:   200 FFIPESPRWL 209

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0006810 "transport" evidence=IEA

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=IEA;ISS

GO:0016021 "integral to membrane" evidence=IEA

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0055085 "transmembrane transport" evidence=IEA

TAIR|locus:2025132 ERDL6 "ERD6-like 6" [Arabidopsis thaliana (taxid:3702)]

 Score = 132 (51.5 bits), Expect = 7.0e-08, P = 7.0e-08
 Identities = 27/69 (39%), Positives = 39/69 (56%)

Query:     8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY 67
             V  Y+AEI   ++RG L +   ++   G +    LG F+ WR  A+L +L   L +  L+
Sbjct:   159 VPVYIAEIAPQNMRGGLGSVNQLSVTIGIMLAYLLGLFVPWRILAVLGILPCTLLIPGLF 218

Query:    68 FIPESPHWL 76
             FIPESP WL
Sbjct:   219 FIPESPRWL 227

GO:0005215 "transporter activity" evidence=IEA

GO:0005351 "sugar:hydrogen symporter activity" evidence=ISS

GO:0005886 "plasma membrane" evidence=ISM

GO:0015144 "carbohydrate transmembrane transporter activity" evidence=ISS

GO:0016020 "membrane" evidence=ISS

GO:0022857 "transmembrane transporter activity" evidence=IEA

GO:0022891 "substrate-specific transmembrane transporter activity" evidence=IEA

GO:0005774 "vacuolar membrane" evidence=IDA

GO:0009705 "plant-type vacuole membrane" evidence=IDA

GO:0010030 "positive regulation of seed germination" evidence=IMP

GO:0042593 "glucose homeostasis" evidence=IMP

GO:0005794 "Golgi apparatus" evidence=IDA

GO:0009694 "jasmonic acid metabolic process" evidence=RCA

GO:0009753 "response to jasmonic acid stimulus" evidence=RCA

---

Prediction of Enzyme Commission (EC) Number

EC Number Prediction by Annotation Transfer from SWISS-PROT Entries

Original result of BLAST against SWISS-PROT

No confident hit for EC number transfering in SWISSPROT detected by BLAST

EC Number Prediction by EFICAz Software

No EC number assignment, probably not an enzyme!

---

Conserved Domains and Related Protein Families

Conserved Domains Detected by RPS-BLAST

Original result of RPS-BLAST against CDD database

ID	Length	Definition	E-value
Query	156
TIGR00879	481	TIGR00879, SP, MFS transporter, sugar porter (SP)	1e-08
pfam00083	449	pfam00083, Sugar_tr, Sugar (and other) transporter	2e-06
PRK10077	479	PRK10077, xylE, D-xylose transporter XylE; Provisi	3e-05

>gnl|CDD|233165 TIGR00879, SP, MFS transporter, sugar porter (SP) family

 Score = 52.0 bits (125), Expect = 1e-08
 Identities = 27/82 (32%), Positives = 39/82 (47%), Gaps = 7/82 (8%)

Query: 6   VLVLTYVAEITQPHLRGMLSATASMTTIFG-------TVSQLFLGSFLHWRSAAILNLLF 58
            LV  Y++EI    LRG L++   +   FG          ++ L + L WR    L L+ 
Sbjct: 146 ALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIP 205

Query: 59  PILALCALYFIPESPHWLISKY 80
             L    L+F+PESP WL+ K 
Sbjct: 206 AGLLFLGLFFLPESPRWLVGKG 227

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083) [Transport and binding proteins, Carbohydrates, organic alcohols, and acids]. Length = 481

>gnl|CDD|215702 pfam00083, Sugar_tr, Sugar (and other) transporter

 Score = 45.7 bits (109), Expect = 2e-06
 Identities = 28/81 (34%), Positives = 38/81 (46%), Gaps = 7/81 (8%)

Query: 6   VLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLF------LGSFLHWRSAAILNLLF 58
           VLV  Y++EI    LRG L +   +   FG  V+ +         +   WR    L  + 
Sbjct: 120 VLVPMYISEIAPKKLRGALGSLYQLGITFGILVAAIIGLGLNKYSNSDGWRIPLGLQFVP 179

Query: 59  PILALCALYFIPESPHWLISK 79
            IL L  L F+PESP WL+ K
Sbjct: 180 AILLLIGLLFLPESPRWLVLK 200

Length = 449

>gnl|CDD|182225 PRK10077, xylE, D-xylose transporter XylE; Provisional

 Score = 42.4 bits (100), Expect = 3e-05
 Identities = 30/85 (35%), Positives = 42/85 (49%), Gaps = 20/85 (23%)

Query: 11  YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH------------WR----SAAIL 54
           Y+AEI   H+RG L +      IFG +   F+  F+             WR    S AI 
Sbjct: 144 YIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIP 203

Query: 55  NLLFPILALCALYFIPESPHWLISK 79
            LLF +L    LYF+PE+P +L+S+
Sbjct: 204 ALLFLML----LYFVPETPRYLMSR 224

Length = 479

Conserved Domains Detected by HHsearch

Original result of HHsearch against CDD database

ID	Length	Definition	Probability
Query	156
KOG0569|consensus	485		99.76
KOG0254|consensus	513		99.6
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	99.57
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	99.56
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	99.51
KOG0253|consensus	528		99.41
KOG0255|consensus	521		99.37
TIGR00898	505	2A0119 cation transport protein.	99.34
PRK10077	479	xylE D-xylose transporter XylE; Provisional	99.27
PRK10642	490	proline/glycine betaine transporter; Provisional	99.02
PRK10642	490	proline/glycine betaine transporter; Provisional	99.01
PRK09952	438	shikimate transporter; Provisional	98.94
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	98.89
PRK10406	432	alpha-ketoglutarate transporter; Provisional	98.77
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	98.58
KOG0252|consensus	538		98.49
TIGR00891	405	2A0112 putative sialic acid transporter.	98.48
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	98.46
PRK15075	434	citrate-proton symporter; Provisional	98.31
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	98.25
PRK12307	426	putative sialic acid transporter; Provisional	98.23
TIGR00895	398	2A0115 benzoate transport.	98.17
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	98.16
PRK11663	434	regulatory protein UhpC; Provisional	98.06
PRK03893	496	putative sialic acid transporter; Provisional	98.05
COG2814	394	AraJ Arabinose efflux permease [Carbohydrate trans	97.92
KOG2533|consensus	495		97.87
PRK15403	413	multidrug efflux system protein MdtM; Provisional	97.87
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	97.87
PRK11010	491	ampG muropeptide transporter; Validated	97.86
PRK03545	390	putative arabinose transporter; Provisional	97.86
TIGR00893	399	2A0114 d-galactonate transporter.	97.86
PRK10213	394	nepI ribonucleoside transporter; Reviewed	97.81
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	97.79
TIGR00880	141	2_A_01_02 Multidrug resistance protein.	97.77
TIGR00901	356	2A0125 AmpG-related permease.	97.74
PRK11195	393	lysophospholipid transporter LplT; Provisional	97.73
PRK11902	402	ampG muropeptide transporter; Reviewed	97.73
TIGR01299	742	synapt_SV2 synaptic vesicle protein SV2. This mode	97.71
TIGR00805	633	oat sodium-independent organic anion transporter.	97.68
TIGR00710	385	efflux_Bcr_CflA drug resistance transporter, Bcr/C	97.67
TIGR00711	485	efflux_EmrB drug resistance transporter, EmrB/QacA	97.67
PTZ00207	591	hypothetical protein; Provisional	97.66
PF07690	352	MFS_1: Major Facilitator Superfamily; InterPro: IP	97.63
PRK10091	382	MFS transport protein AraJ; Provisional	97.56
PRK14995	495	methyl viologen resistance protein SmvA; Provision	97.55
PRK11102	377	bicyclomycin/multidrug efflux system; Provisional	97.55
TIGR00900	365	2A0121 H+ Antiporter protein.	97.55
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	97.51
PRK10473	392	multidrug efflux system protein MdtL; Provisional	97.38
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	97.35
PRK10489	417	enterobactin exporter EntS; Provisional	97.33
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	97.3
KOG2532|consensus	466		97.28
PLN00028	476	nitrate transmembrane transporter; Provisional	97.27
KOG2615|consensus	451		97.26
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	97.26
PRK15402	406	multidrug efflux system translocase MdfA; Provisio	97.26
TIGR00886	366	2A0108 nitrite extrusion protein (nitrite facilita	97.24
COG2271	448	UhpC Sugar phosphate permease [Carbohydrate transp	97.24
KOG1330|consensus	493		97.22
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	97.21
PRK12382	392	putative transporter; Provisional	97.19
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	97.14
PRK05122	399	major facilitator superfamily transporter; Provisi	97.11
PRK10504	471	putative transporter; Provisional	97.1
PRK10077	479	xylE D-xylose transporter XylE; Provisional	97.08
PRK11646	400	multidrug resistance protein MdtH; Provisional	97.04
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	97.03
PRK09874	408	drug efflux system protein MdtG; Provisional	97.01
TIGR00898	505	2A0119 cation transport protein.	96.99
PRK15011	393	sugar efflux transporter B; Provisional	96.97
PRK11652	394	emrD multidrug resistance protein D; Provisional	96.96
PF06609	599	TRI12: Fungal trichothecene efflux pump (TRI12); I	96.93
PRK03699	394	putative transporter; Provisional	96.89
PRK11043	401	putative transporter; Provisional	96.86
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	96.84
TIGR00806	511	rfc RFC reduced folate carrier. Proteins of the RF	96.74
PRK10207	489	dipeptide/tripeptide permease B; Provisional	96.71
PRK10054	395	putative transporter; Provisional	96.7
PRK05122	399	major facilitator superfamily transporter; Provisi	96.67
cd06174	352	MFS The Major Facilitator Superfamily (MFS) is a l	96.67
TIGR00885	410	fucP L-fucose:H+ symporter permease. This family d	96.67
PRK15011	393	sugar efflux transporter B; Provisional	96.6
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.59
TIGR00892	455	2A0113 monocarboxylate transporter 1.	96.55
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.53
TIGR00879	481	SP MFS transporter, sugar porter (SP) family. This	96.51
TIGR00890	377	2A0111 Oxalate/Formate Antiporter.	96.38
TIGR00893	399	2A0114 d-galactonate transporter.	96.35
TIGR00887	502	2A0109 phosphate:H+ symporter. This model represen	96.33
PRK11551	406	putative 3-hydroxyphenylpropionic transporter MhpT	96.29
PRK12382	392	putative transporter; Provisional	96.24
TIGR01272	310	gluP glucose/galactose transporter. Disruption of	96.11
PRK09584	500	tppB putative tripeptide transporter permease; Rev	96.02
PRK10133	438	L-fucose transporter; Provisional	95.94
TIGR00899	375	2A0120 sugar efflux transporter. This family of pr	95.93
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	95.92
PRK09952	438	shikimate transporter; Provisional	95.91
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	95.87
PRK09705	393	cynX putative cyanate transporter; Provisional	95.75
PRK09528	420	lacY galactoside permease; Reviewed	95.75
PRK03633	381	putative MFS family transporter protein; Provision	95.61
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	95.39
PRK15462	493	dipeptide/tripeptide permease D; Provisional	95.39
PRK09874	408	drug efflux system protein MdtG; Provisional	95.31
TIGR00896	355	CynX cyanate transporter. This family of proteins	95.31
COG2223	417	NarK Nitrate/nitrite transporter [Inorganic ion tr	95.29
PRK15034	462	nitrate/nitrite transport protein NarU; Provisiona	95.27
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	95.05
PRK11273	452	glpT sn-glycerol-3-phosphate transporter; Provisio	95.0
PRK11128	382	putative 3-phenylpropionic acid transporter; Provi	94.95
PRK10489	417	enterobactin exporter EntS; Provisional	94.88
TIGR00924	475	yjdL_sub1_fam amino acid/peptide transporter (Pept	94.85
TIGR00897	402	2A0118 polyol permease family. This family of prot	94.48
PRK11010	491	ampG muropeptide transporter; Validated	94.33
PRK03893	496	putative sialic acid transporter; Provisional	94.28
KOG0252|consensus	538		94.07
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	94.01
KOG2816|consensus	463		93.91
KOG0569|consensus	485		93.89
PRK09705	393	cynX putative cyanate transporter; Provisional	93.82
PF03825	400	Nuc_H_symport: Nucleoside H+ symporter	93.8
PRK11663	434	regulatory protein UhpC; Provisional	93.68
TIGR02718	390	sider_RhtX_FptX siderophore transporter, RhtX/FptX	93.22
TIGR00788	468	fbt folate/biopterin transporter. The only functio	93.21
PRK09584	500	tppB putative tripeptide transporter permease; Rev	93.08
PRK12307	426	putative sialic acid transporter; Provisional	92.97
PRK03633	381	putative MFS family transporter protein; Provision	92.8
TIGR00788	468	fbt folate/biopterin transporter. The only functio	92.74
KOG3764|consensus	464		92.68
TIGR00882	396	2A0105 oligosaccharide:H+ symporter.	92.55
PRK03545	390	putative arabinose transporter; Provisional	92.41
PF11700	477	ATG22: Vacuole effluxer Atg22 like; InterPro: IPR0	92.4
TIGR00897	402	2A0118 polyol permease family. This family of prot	92.32
TIGR00903	368	2A0129 major facilitator 4 family protein. This fa	92.26
PRK08633	1146	2-acyl-glycerophospho-ethanolamine acyltransferase	92.19
PRK10406	432	alpha-ketoglutarate transporter; Provisional	92.05
KOG0255|consensus	521		91.82
PRK11646	400	multidrug resistance protein MdtH; Provisional	91.76
TIGR00712	438	glpT glycerol-3-phosphate transporter. This model	91.65
PRK11902	402	ampG muropeptide transporter; Reviewed	91.49
TIGR00891	405	2A0112 putative sialic acid transporter.	91.47
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	91.39
TIGR00883	394	2A0106 metabolite-proton symporter. This model rep	91.3
PRK09528	420	lacY galactoside permease; Reviewed	91.05
PF00083	451	Sugar_tr: Sugar (and other) transporter; InterPro:	90.81
PRK10504	471	putative transporter; Provisional	90.73
TIGR00881	379	2A0104 phosphoglycerate transporter family protein	90.66
PRK09556	467	uhpT sugar phosphate antiporter; Reviewed	90.37
PRK06814	1140	acylglycerophosphoethanolamine acyltransferase; Pr	89.47
PF03209	403	PUCC: PUCC protein; InterPro: IPR004896 This prote	88.95
KOG0253|consensus	528		88.03
KOG3626|consensus	735		87.97
TIGR00902	382	2A0127 phenyl proprionate permease family protein.	87.19
PF03092	433	BT1: BT1 family; InterPro: IPR004324 Members of th	87.08
KOG2325|consensus	488		87.04
PF13347	428	MFS_2: MFS/sugar transport protein	86.38
PLN00028	476	nitrate transmembrane transporter; Provisional	86.33
PRK03699	394	putative transporter; Provisional	86.28
KOG3762|consensus	618		85.27
PRK10207	489	dipeptide/tripeptide permease B; Provisional	84.89
COG2807	395	CynX Cyanate permease [Inorganic ion transport and	84.78
PRK09669	444	putative symporter YagG; Provisional	84.69
KOG0254|consensus	513		84.66
PRK10054	395	putative transporter; Provisional	84.63
PRK11462	460	putative transporter; Provisional	83.42
TIGR01301	477	GPH_sucrose GPH family sucrose/H+ symporter. This	83.36
TIGR00894	465	2A0114euk Na(+)-dependent inorganic phosphate cotr	83.19
COG0477	338	ProP Permeases of the major facilitator superfamil	82.97
PF05977	524	MFS_3: Transmembrane secretion effector; InterPro:	82.9
TIGR02332	412	HpaX 4-hydroxyphenylacetate permease. This protein	82.78
PF06779	85	DUF1228: Protein of unknown function (DUF1228); In	81.59
TIGR00792	437	gph sugar (Glycoside-Pentoside-Hexuronide) transpo	81.1
TIGR00889	418	2A0110 nucleoside transporter. This family of prot	80.36

>KOG0569|consensus

Probab=99.76  E-value=2e-18  Score=138.78  Aligned_cols=99  Identities=28%  Similarity=0.359  Sum_probs=88.6

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESPHW   75 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~   75 (156)
                      |......++|+.|++|.+.||..+++.+++..+|.+++..++..      ..|++.+.+..+++++.++..+++||||||
T Consensus       131 gl~~~~~pmyl~E~sP~~~RG~~g~~~~~~~~~g~ll~~~~~l~~ilGt~~~W~~l~~~~~i~~~~~l~~l~~~PESPk~  210 (485)
T KOG0569|consen  131 GLSTGLVPMYLTEISPKNLRGALGTLLQIGVVIGILLGQVLGLPSLLGTEDLWPYLLAFPLIPALLQLALLPFLPESPKY  210 (485)
T ss_pred             HHHHHHHHHHHhhcChhhhccHHHHHHHHHHHHHHHHHHHHccHHhcCCCcchHHHHHHHHHHHHHHHHHHhcCCCCcch
Confidence            45567899999999999999999999999999999999877653      479999999999999999999999999999


Q ss_pred             HHH-hcChhhHhHHHHHHHHHHHHhhCCCCCCC
Q psy15865         76 LIS-KYLPIGLSALATSAKNMLLFSYGTTLGLP  107 (156)
Q Consensus        76 l~~-~~~~~~a~~~l~~a~~~l~~~~~~~~~~~  107 (156)
                      |+. ||+.+|       |++.++++|+...+..
T Consensus       211 Ll~~k~~~~~-------A~~sl~~y~G~~~~~~  236 (485)
T KOG0569|consen  211 LLIKKGDEEE-------ARKALKFYRGKEDVEA  236 (485)
T ss_pred             HHHHcCCHHH-------HHHHHHHHhCCCcchh
Confidence            998 788888       8999999999765444

>KOG0254|consensus

Probab=99.60  E-value=6.4e-15  Score=120.19  Aligned_cols=96  Identities=28%  Similarity=0.416  Sum_probs=88.2

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFIPESPHW   75 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~~~~~~~~~~~~~~~~~~lpESp~~   75 (156)
                      +|+...++++|++|++|++.||.+.++.++.+.+|.++++++++..     +||+++.+..+++++..+..+++||||+|
T Consensus       156 ~G~~~~~~piy~sEiap~~~RG~l~~~~~l~~~~Gi~~~~~~~~~~~~~~~~Wr~~~~~~~i~~~~~~~~~~~~pesp~~  235 (513)
T KOG0254|consen  156 VGGASVLAPVYISEIAPAHIRGTLVSLYQLFITIGILLGYCINYGTSKVYAGWRIPLGLALIPAVILALGMLFLPESPRW  235 (513)
T ss_pred             hhhhhhcchhhHhhcCChhhhHHHHHHHHHHHHHHHHHHHHHhhhhccCCccHHHHHHHHHHHHHHHHHHHHhCCCChHH
Confidence            3677789999999999999999999999999999999999888875     79999999999999987778999999999


Q ss_pred             HHHhcChhhHhHHHHHHHHHHHHhhCCC
Q psy15865         76 LISKYLPIGLSALATSAKNMLLFSYGTT  103 (156)
Q Consensus        76 l~~~~~~~~a~~~l~~a~~~l~~~~~~~  103 (156)
                      +.++|+.++       +++.++++++..
T Consensus       236 L~~~g~~~~-------a~~~l~~l~g~~  256 (513)
T KOG0254|consen  236 LIEKGRLEE-------AKRSLKRLRGLS  256 (513)
T ss_pred             HHHcCChHH-------HHHHHHHHhCCC
Confidence            999999999       889999998844

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=99.57  E-value=2.1e-17  Score=131.88  Aligned_cols=95  Identities=29%  Similarity=0.499  Sum_probs=83.9

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h---hHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L---HWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~---~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      +|+..+++++|+.|++|+++||...++.++++.+|.+++.++++.    .   .||+.++++++++++.++..+++||||
T Consensus       116 ~g~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~Wr~~~~~~~~~~l~~~~~~~~~pESP  195 (451)
T PF00083_consen  116 IGGAYVVSPIYISEIAPPKHRGFLSSLFQLFWALGILLASLIGYIVSYYSDNWGWRILLIFGAIPSLLVLLLRFFLPESP  195 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccccc
Confidence            477889999999999999999999999999999999998877653    2   499999999999998888889999999


Q ss_pred             HHHHHhcChhhHhHHHHHHHHHHHHhhCC
Q psy15865         74 HWLISKYLPIGLSALATSAKNMLLFSYGT  102 (156)
Q Consensus        74 ~~l~~~~~~~~a~~~l~~a~~~l~~~~~~  102 (156)
                      +||..|||++|       |++.++++++.
T Consensus       196 ~wL~~~~~~~~-------A~~~l~~~~~~  217 (451)
T PF00083_consen  196 RWLLSKGRDEE-------AEKVLRKLRGK  217 (451)
T ss_pred             ceecccccccc-------ccccccccccc
Confidence            99999999999       67777665554

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=99.56  E-value=3.6e-14  Score=115.34  Aligned_cols=94  Identities=18%  Similarity=0.213  Sum_probs=77.5

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---------------------------hhHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---------------------------LHWRSAAIL   54 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---------------------------~~Wr~~~~~   54 (156)
                      |+..+..++|++|++|++.||+..++.++++.+|.+++..++..                           ++||+++.+
T Consensus       130 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~g~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~WR~~~~~  209 (502)
T TIGR00887       130 GGDYPLSAIITSEFATKKWRGAMMAAVFAMQGFGILAGAIVALIVLAGFKHSLEAAADEASCTGSCVPAVDYMWRILIGF  209 (502)
T ss_pred             hhhhHHHHHHHHHhcChhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccccccccccccccccchhcccHHHHHHH
Confidence            56778899999999999999999999999999988887665431                           269999999


Q ss_pred             HHHHHHHHHHHHhhccCChHHHHHhcChhhHhHHHHHHHHHHHHhhC
Q psy15865         55 NLLFPILALCALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYG  101 (156)
Q Consensus        55 ~~~~~~~~~~~~~~lpESp~~l~~~~~~~~a~~~l~~a~~~l~~~~~  101 (156)
                      +++|+++.++.++++||||||+..++|.+++      +++.++++++
T Consensus       210 ~~ip~~i~~~~~~~lpESpr~l~~~~~~~~~------a~~~~~~~~~  250 (502)
T TIGR00887       210 GAVPALLALYFRLTIPETPRYTADVAKDVEQ------AASDMSAVLQ  250 (502)
T ss_pred             HHHHHHHHHHHHHhCCCCHHHHHHhCcchHH------HHHHHHHHhc
Confidence            9999998888889999999999999987542      4445555443

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=99.51  E-value=1.1e-13  Score=117.03  Aligned_cols=95  Identities=23%  Similarity=0.294  Sum_probs=80.9

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----------------hhHHHHHHHHHHHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----------------LHWRSAAILNLLFPILALC   64 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------------~~Wr~~~~~~~~~~~~~~~   64 (156)
                      |+..++++++++|++|.+.||...++.++++.+|.++++.+++.                 .+||+++++.++++++.++
T Consensus       270 g~~~p~~~~~isE~~p~~~Rg~~~g~~~~~~~iG~ila~~la~~il~~~G~~~~~g~~~~~~gWR~l~~i~~lp~ll~ll  349 (742)
T TIGR01299       270 GGAIPIVFSYFAEFLAQEKRGEHLSWLCMFWMIGGIYAAAMAWAIIPHYGWSFQMGSAYQFHSWRVFVIVCAFPCVFAIG  349 (742)
T ss_pred             HHHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhccccccccccHHHHHHHHHHHHHHHHH
Confidence            45678899999999999999999999999999999888765432                 3699999999999988888


Q ss_pred             HHhhccCChHHHHHhcChhhHhHHHHHHHHHHHHhhCCC
Q psy15865         65 ALYFIPESPHWLISKYLPIGLSALATSAKNMLLFSYGTT  103 (156)
Q Consensus        65 ~~~~lpESp~~l~~~~~~~~a~~~l~~a~~~l~~~~~~~  103 (156)
                      .++++||||+|+..+||.++       +.++++++++.+
T Consensus       350 ~~~~lPESPrwL~~~gr~~e-------A~~iL~~i~~~n  381 (742)
T TIGR01299       350 ALTFMPESPRFFLENGKHDE-------AWMILKLIHDTN  381 (742)
T ss_pred             HHHHcCCCHHHHHHCCCHHH-------HHHHHHHHhcCC
Confidence            88999999999999999999       566666665543

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>KOG0253|consensus

Probab=99.41  E-value=1.3e-12  Score=101.70  Aligned_cols=95  Identities=17%  Similarity=0.108  Sum_probs=83.1

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHH
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWL   76 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l   76 (156)
                      +|+ .|+..++-.|..|..+|+..+.+. .+|.+|.++...+++.    .+|||..+...+|..++..+.+++||||||+
T Consensus       180 ~gg-~pv~~~~yle~lp~~~r~~~~V~~-~~waig~v~ea~law~vm~~~gwr~~l~~~~~pl~~~a~f~~w~~ESpRf~  257 (528)
T KOG0253|consen  180 VGG-LPVDSAIYLEFLPSSHRWLLTVMS-FFWAIGQVFEALLAWGVMSNFGWRYLLFTSSTPLMFAARFLVWVYESPRFY  257 (528)
T ss_pred             CCC-ccHhHHHHHHhccCcCCCcchhHH-HHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHhHHHHHHHHHhhcccCcchh
Confidence            356 888899999999999999988777 9999999998888774    5999999999999888888889999999999


Q ss_pred             HHhcChhhHhHHHHHHHHHHH
Q psy15865         77 ISKYLPIGLSALATSAKNMLL   97 (156)
Q Consensus        77 ~~~~~~~~a~~~l~~a~~~l~   97 (156)
                      +.+|++++|.+.++++.+.++
T Consensus       258 ~~~G~~~kAletL~kiArmNg  278 (528)
T KOG0253|consen  258 LAKGDDYKALETLHKIARMNG  278 (528)
T ss_pred             hhcCChHHHHHHHHHHHHhcC
Confidence            999999998777777776653

>KOG0255|consensus

Probab=99.37  E-value=1.6e-12  Score=106.05  Aligned_cols=94  Identities=23%  Similarity=0.285  Sum_probs=79.2

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-hHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-HWRSAAILNLLFPILALCALYFIPESPHWLISKY   80 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~   80 (156)
                      ++..+++.++++|+.+++.|+...++...++..|.++..+.++.. +||+.+++..+++++.++++++.||||||+..+|
T Consensus       186 ~~~~~~~~~~~~E~~~~~~R~~~~~~~~~~~~~~~~~~~~~a~~~~~Wr~~~~~~~~~~~~~~~~~~l~~Es~rwl~~~g  265 (521)
T KOG0255|consen  186 SGPLTVGFGLVAEIVSPKQRGLALTLGGFFFVGGLMLPAGAAYITRDWRWLFWIISIPSGLFLLLWFLPPESPRWLLSKG  265 (521)
T ss_pred             cchhHHhHhhheeecCcchhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHccCcChHHHHHcC
Confidence            567788999999999999999999997777777777777777654 7999999999999988777777779999999999


Q ss_pred             ChhhHhHHHHHHHHH
Q psy15865         81 LPIGLSALATSAKNM   95 (156)
Q Consensus        81 ~~~~a~~~l~~a~~~   95 (156)
                      +.++|.+.++++.+.
T Consensus       266 ~~~~a~~~l~~~a~~  280 (521)
T KOG0255|consen  266 RIDEAIKILKKIAKL  280 (521)
T ss_pred             chHHHHHHHHHHHhh
Confidence            999966666655544

>TIGR00898 2A0119 cation transport protein

Probab=99.34  E-value=9.3e-12  Score=100.91  Aligned_cols=93  Identities=20%  Similarity=0.274  Sum_probs=80.2

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-LHWRSAAILNLLFPILALCALYFIPESPHWLISKY   80 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~~   80 (156)
                      |+..++...++.|+.|+++|++..++.++++.+|.++++++++. .+||+.+++.+++.++.++..+++||||+|+..++
T Consensus       195 ~~~~~~~~~~~~e~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~wr~~~~~~~i~~~~~~~~~~~~~esp~~l~~~~  274 (505)
T TIGR00898       195 GGIWVQAVVLNTEFLPKKQRAIVGTLIQVFFSLGLVLLPLVAYFIPDWRWLQLAVSLPTFLFFLLSWFVPESPRWLISQG  274 (505)
T ss_pred             cchHHHHHHHhheecChhhhHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhcCCChHHHHHCC
Confidence            45578889999999999999999999999999999999888765 47999999999998887777788999999999999


Q ss_pred             ChhhHhHHHHHHHH
Q psy15865         81 LPIGLSALATSAKN   94 (156)
Q Consensus        81 ~~~~a~~~l~~a~~   94 (156)
                      +.+++.+.+++..+
T Consensus       275 ~~~~a~~~l~~~~~  288 (505)
T TIGR00898       275 RIEEALKILQRIAK  288 (505)
T ss_pred             CHHHHHHHHHHHHH
Confidence            99996655555443

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=99.27  E-value=3.6e-11  Score=96.69  Aligned_cols=84  Identities=30%  Similarity=0.489  Sum_probs=72.7

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+..+..+.+++|++|++.||+..++.+.+..+|.+++++++.            ..+||++|++.+++.++.++..+++
T Consensus       135 g~~~~~~~~~i~e~~~~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~l  214 (479)
T PRK10077        135 GLASMLSPMYIAEIAPAHIRGKLVSFNQFAIIFGQLVVYFVNYFIARSGDASWLNTDGWRYMFASEAIPALLFLMLLYFV  214 (479)
T ss_pred             hHHhhHHHHHHHhhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHhccCcccccccCChHHHHHHHHHHHHHHHHHHHcC
Confidence            5567788999999999999999999999999999998876643            2489999999998888777777889


Q ss_pred             cCChHHHHHhcChhhH
Q psy15865         70 PESPHWLISKYLPIGL   85 (156)
Q Consensus        70 pESp~~l~~~~~~~~a   85 (156)
                      ||||+|+..+++.+++
T Consensus       215 ~~s~~~l~~~~~~~~~  230 (479)
T PRK10077        215 PETPRYLMSRGKQEQA  230 (479)
T ss_pred             CCCcHHHHHcCCHHHH
Confidence            9999999988888874

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.02  E-value=1.3e-09  Score=88.53  Aligned_cols=79  Identities=19%  Similarity=0.194  Sum_probs=64.7

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+.++....+++|++|+++||+..++.+.+..+|.+++..+..            .++||++|++..+++++.++++.++
T Consensus       133 g~~~~~~~~~~~e~~p~~~Rg~~~~~~~~~~~~G~~lg~~~~~~~~~~~~~~~~~~~gWR~~f~i~~~~~l~~~~~~~~~  212 (490)
T PRK10642        133 GGEYTGASIFVAEYSPDRKRGFMGSWLDFGSIAGFVLGAGVVVLISTIVGEANFLDWGWRIPFFIALPLGIIGLYLRHAL  212 (490)
T ss_pred             HhhHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhcCccHHHHHHHHHHHHHHHHHHHHcC
Confidence            6778899999999999999999999999888888877664321            2589999999888777767777789


Q ss_pred             cCChHHHHHhc
Q psy15865         70 PESPHWLISKY   80 (156)
Q Consensus        70 pESp~~l~~~~   80 (156)
                      ||||+|...++
T Consensus       213 ~esp~~~~~~~  223 (490)
T PRK10642        213 EETPAFQQHVD  223 (490)
T ss_pred             CCChhHHHHHH
Confidence            99999976543

>PRK10642 proline/glycine betaine transporter; Provisional

Probab=99.01  E-value=7.6e-10  Score=89.91  Aligned_cols=88  Identities=11%  Similarity=0.120  Sum_probs=66.5

Q ss_pred             hhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHHh-
Q psy15865          6 VLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLISK-   79 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~~-   79 (156)
                      .....++.|.+|++.||...++ .+++...|.+..+++++.    .+|+.++++..+++++.++..+++||||+|+.++ 
T Consensus       361 g~~~~~~~~~~p~~~Rg~~~g~~~~~~~~~g~~~p~i~g~l~~~~~~~~~~~~~~~~~~~i~~~~~~~~pes~~~~~~~~  440 (490)
T PRK10642        361 GVMASTLPAMFPTHIRYSALAAAFNISVLVAGLTPTLAAWLVESTQNLMMPAYYLMVVAVIGLITGVTMKETANRPLKGA  440 (490)
T ss_pred             HHHHHHHHHHCCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccCCCCCCc
Confidence            4556778999999999987775 666665555444444432    2588888888888888777777889999999865 


Q ss_pred             ----cChhhHhHHHHHHHHHHHHhh
Q psy15865         80 ----YLPIGLSALATSAKNMLLFSY  100 (156)
Q Consensus        80 ----~~~~~a~~~l~~a~~~l~~~~  100 (156)
                          ||.+|       |++++++++
T Consensus       441 ~~~~~~~~~-------a~~~l~~~~  458 (490)
T PRK10642        441 TPAASDIQE-------AKEILVEHY  458 (490)
T ss_pred             cccccchhh-------HHHHhhccc
Confidence                89899       778887776

>PRK09952 shikimate transporter; Provisional

Probab=98.94  E-value=4.1e-09  Score=84.53  Aligned_cols=79  Identities=14%  Similarity=0.102  Sum_probs=65.8

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+.++.+..++.|+.|+++||...+..+.++.+|.+++..+..            .++||++|++..++.++.+..+..+
T Consensus       140 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~g~~~G~~l~~~~~~~l~~~~~~~~~~~~gWr~~f~~~~~~~l~~~~l~~~~  219 (438)
T PRK09952        140 GGEWGGAALLAVESAPKNKKAFYSSGVQVGYGVGLLLSTGLVSLISMMTTDEQFLSWGWRIPFLFSIVLVLIALWVRNGM  219 (438)
T ss_pred             cccHHHHHHHHHHhCCCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHhhccChHHHHHHHHHHHHHHHHHHHhC
Confidence            5677888899999999999999999999999999988754432            3589999999998877766667789


Q ss_pred             cCChHHHHHhc
Q psy15865         70 PESPHWLISKY   80 (156)
Q Consensus        70 pESp~~l~~~~   80 (156)
                      ||||+|...++
T Consensus       220 ~es~~~~~~~~  230 (438)
T PRK09952        220 EESAEFEQQQH  230 (438)
T ss_pred             CCChhHHHHHh
Confidence            99999876653

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=98.89  E-value=1.7e-08  Score=80.00  Aligned_cols=82  Identities=33%  Similarity=0.524  Sum_probs=70.4

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh---h----hhhHHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG---S----FLHWRSAAILNLLFPILALCALYFIPESPHW   75 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~---~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~   75 (156)
                      ...+....++.|++|+++|++..++.+.+..+|.++++.++   .    ..+||+.|++..+..++.++..+++||+|++
T Consensus       143 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~w~~~f~~~~~~~~~~~~~~~~l~~~~~~  222 (481)
T TIGR00879       143 IASALVPMYLSEIAPKALRGALTSLYQLAITFGILVAYGFGSGKVSLNNTLGWRIPLGLQLIPAGLLFLGLFFLPESPRW  222 (481)
T ss_pred             HHHhHHHHHHHccCChhhhhhhhhHHHHHHHHHHHHHHHHHHHhhcCCCCccHHHHHHHHHHHHHHHHHHHhcCCCChHH
Confidence            44567788999999999999999999999999999999888   3    3589999999888777777777889999999


Q ss_pred             HHHhcChhh
Q psy15865         76 LISKYLPIG   84 (156)
Q Consensus        76 l~~~~~~~~   84 (156)
                      +..+++.++
T Consensus       223 ~~~~~~~~~  231 (481)
T TIGR00879       223 LVGKGRVEE  231 (481)
T ss_pred             HHHcCChHH
Confidence            888777766

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=98.77  E-value=6.7e-08  Score=77.26  Aligned_cols=76  Identities=18%  Similarity=0.218  Sum_probs=63.7

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+..++...+++|+.|+++||+..++.+.+...|.+++.++..            .++||++|++.++++++.++.+..+
T Consensus       139 g~~~~~~~~~i~e~~p~~~rg~~~~~~~~~~~~G~~~~~~~~~~~~~~~~~~~~~~~gWr~~F~i~~~~~ll~~~~~~~~  218 (432)
T PRK10406        139 GGEYGTSATYMSEVAVEGRKGFYASFQYVTLIGGQLLALLVVVVLQQTLEDAELREWGWRIPFALGAVLAVVALWLRRQL  218 (432)
T ss_pred             hhhHhhHHHHHHHhCCCCcccHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHhcC
Confidence            6778899999999999999999999888888888877765432            3589999999999988877777789


Q ss_pred             cCChHHHH
Q psy15865         70 PESPHWLI   77 (156)
Q Consensus        70 pESp~~l~   77 (156)
                      ||+|++..
T Consensus       219 ~e~~~~~~  226 (432)
T PRK10406        219 DETSQQET  226 (432)
T ss_pred             CCCchHHH
Confidence            99998743

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=98.58  E-value=1.2e-07  Score=75.55  Aligned_cols=73  Identities=16%  Similarity=0.240  Sum_probs=59.6

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhcc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIP   70 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lp   70 (156)
                      |+..+....++.|++|+++|++..++++.+..+|..+++.++..          .+||+.|.+.++++++. ++.++++|
T Consensus       111 ~~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~gwr~~f~~~~~~~l~~~~~~~~~~~  190 (412)
T TIGR02332       111 AGFLPGILLYLTFWFPAYFRARANALFMIAMPVTMALGLILSGYILALDGLMALKGWQWLFLLEGFPSVILGVMTWFWLD  190 (412)
T ss_pred             hhHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCCCCccchhHHHHHHHHHHHHHHHHHhhccC
Confidence            34556777889999999999999999999999999888777542          38999999998887654 44566789


Q ss_pred             CChH
Q psy15865         71 ESPH   74 (156)
Q Consensus        71 ESp~   74 (156)
                      |+|+
T Consensus       191 ~~p~  194 (412)
T TIGR02332       191 DSPD  194 (412)
T ss_pred             CCcc
Confidence            9994

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>KOG0252|consensus

Probab=98.49  E-value=5.5e-08  Score=77.82  Aligned_cols=82  Identities=18%  Similarity=0.181  Sum_probs=69.7

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------------------hhHHHHHHHHHHHHHH
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------------------LHWRSAAILNLLFPIL   61 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------------------~~Wr~~~~~~~~~~~~   61 (156)
                      |||++|.+.+..+|.+..+.||...+.+.....+|++.+.+++..                   .-||+.+.+..+|+++
T Consensus       158 IGGDYPlSAtI~SE~an~~~RGa~iaavFa~Qg~GilaG~ivt~Iv~~~fe~~~~~~~~~~~ld~vWRl~~glg~vpa~~  237 (538)
T KOG0252|consen  158 IGGDYPLSATIMSESANKKTRGAFIAAVFAMQGFGILAGGIVALIVSAIFEKIFNGPSTYPHLDGVWRIIFGLGAVPALL  237 (538)
T ss_pred             ccCCCcchHHHhhhhhhhccccceeEEEEEecchhHhhccHHHHHHHHHHhccCCCCCCchHHHHHHHHHHHHHHHHHHH
Confidence            699999999999999999999999988777777777776655442                   2699999999999999


Q ss_pred             HHHHHhhccCChHHHHHhcCh
Q psy15865         62 ALCALYFIPESPHWLISKYLP   82 (156)
Q Consensus        62 ~~~~~~~lpESp~~l~~~~~~   82 (156)
                      .+..++.||||++|-....++
T Consensus       238 ~ly~Rl~M~Et~~Y~al~~~~  258 (538)
T KOG0252|consen  238 VLYFRLKMPETARYTALVSKK  258 (538)
T ss_pred             HHHhhhcCCcchhHHHHhhcC
Confidence            999999999999997554433

>TIGR00891 2A0112 putative sialic acid transporter

Probab=98.48  E-value=1.6e-06  Score=67.75  Aligned_cols=78  Identities=26%  Similarity=0.273  Sum_probs=63.1

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh--HHHHHHHHHHHHHHHHHHHhhccCChHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH--WRSAAILNLLFPILALCALYFIPESPHW   75 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~--Wr~~~~~~~~~~~~~~~~~~~lpESp~~   75 (156)
                      |+..+....++.|+.|+++|++..++.+.+..+|.+++..++..    .+  ||+.+.+.+++.++.++....+||++++
T Consensus       115 ~~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~~~~l~~~l~~~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  194 (405)
T TIGR00891       115 GGEYGSSAAYVIESWPKHLRNKASGLLISGYAVGAVVAAQVYSLVVPVWGDGWRALFFISILPIIFALWLRKNIPEAEDW  194 (405)
T ss_pred             hhhhHHHHHHHHHhCChhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccHHHHHHHHHHHHHHHHHHHHhCCCChhH
Confidence            34566778899999999999999999999999998888776553    23  9999999888877777777788999887


Q ss_pred             HHHh
Q psy15865         76 LISK   79 (156)
Q Consensus        76 l~~~   79 (156)
                      ...+
T Consensus       195 ~~~~  198 (405)
T TIGR00891       195 KEKH  198 (405)
T ss_pred             HHHh
Confidence            6443

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=98.46  E-value=6e-07  Score=70.74  Aligned_cols=71  Identities=14%  Similarity=0.077  Sum_probs=57.8

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPHWL   76 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l   76 (156)
                      ......++|+.|+++|++..++.+.+..+|.++++.++..    .+||+.|++.++++++. ++.++++||+|++.
T Consensus        97 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~lG~~l~~~~~~~l~~~~gWr~~f~~~~~l~~~~~~~~~~~lp~~p~~~  172 (368)
T TIGR00903        97 LNAFAPAASQIREERRDLVISLLSFAMYLGIIFALAAGLKIYTAGGLQLLIIPIAAVAAAGIILVLAALPALPFQA  172 (368)
T ss_pred             HHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccchHHHHHHHHHHHHHHHHHHHHHcCCCCCCC
Confidence            3445667999999999999999999999999998877665    49999999977776554 55567899999863

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK15075 citrate-proton symporter; Provisional

Probab=98.31  E-value=4.9e-06  Score=66.62  Aligned_cols=77  Identities=22%  Similarity=0.285  Sum_probs=55.4

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+..+....+++|+.|+++|++..++.+.+..+|..++..++.            ..+||++|++..+..++.++....+
T Consensus       132 g~~~~~~~~~~~e~~p~~~rg~~~~~~~~~~~~g~~~g~~~g~~l~~~~~~~~~~~~gWr~~f~~~~~~~~~~~~~~~~~  211 (434)
T PRK15075        132 GVELGGVSVYLAEIATPGRKGFYTSWQSASQQVAVVFAALLGYLLNQWLSPAQMAEWGWRIPFLIGCLIVPFIFLIRRSL  211 (434)
T ss_pred             cccHHHHHHHHHhhCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhCCHHHHhccchHHHHHHHHHHHHHHHHHHHhc
Confidence            3456777899999999999999999877666665555443332            2589999998776655555555668


Q ss_pred             cCChHHHHH
Q psy15865         70 PESPHWLIS   78 (156)
Q Consensus        70 pESp~~l~~   78 (156)
                      ||++.+...
T Consensus       212 ~e~~~~~~~  220 (434)
T PRK15075        212 EETEEFLAR  220 (434)
T ss_pred             CCCHHHHHh
Confidence            898766543

>TIGR00883 2A0106 metabolite-proton symporter

Probab=98.25  E-value=6e-06  Score=64.02  Aligned_cols=78  Identities=15%  Similarity=0.215  Sum_probs=62.4

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh------------hhhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS------------FLHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~------------~~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |...+....++.|+.++++|++..+..+.+..+|.+++..++.            .++||+.+++..++.++.++....+
T Consensus       111 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~G~~i~~~~~~~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  190 (394)
T TIGR00883       111 GGEWGGAALYLAEYAPPGKRGFYGSFQQVGAPVGLLLAALTVLLLSYLLGDDALLEWGWRIPFLVSAVLVLIGLYLRRNL  190 (394)
T ss_pred             cccccccHHHhhhcCCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHhhccchHHHHHHHHHHHHHHHHHHHhc
Confidence            3455677889999999999999999999999999888876542            2489999999888877766666778


Q ss_pred             cCChHHHHHh
Q psy15865         70 PESPHWLISK   79 (156)
Q Consensus        70 pESp~~l~~~   79 (156)
                      ||+|++...+
T Consensus       191 ~~~~~~~~~~  200 (394)
T TIGR00883       191 EETPVFEKAQ  200 (394)
T ss_pred             CCChhHHHHH
Confidence            9998775543

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK12307 putative sialic acid transporter; Provisional

Probab=98.23  E-value=7.1e-06  Score=65.10  Aligned_cols=77  Identities=25%  Similarity=0.283  Sum_probs=61.0

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLI   77 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~   77 (156)
                      |+..+....++.|+.|++.|++..++.+.++.+|.++++.+...    .+||+.+++..++.++.++.....||++++..
T Consensus       121 g~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~lg~~~~~~l~~~l~~~~~w~~~f~i~~~~~~~~~~~~~~~p~~~~~~~  200 (426)
T PRK12307        121 AGEYACASTYAVESWPKHLKSKASAFLVSGFGIGNIIAAYFMPSFAEAYGWRAAFFVGLLPVLLVIYIRARAPESKEWEE  200 (426)
T ss_pred             hhHHHHHHHHHHHhCCHhHhhHhhhHHHHHHhHHHHHHHHHHHHHcccCCHHHHHHHHHHHHHHHHHHHHHCCCChHHHH
Confidence            34567788899999999999999999999999999888766542    58999999877666555555556799987754


Q ss_pred             H
Q psy15865         78 S   78 (156)
Q Consensus        78 ~   78 (156)
                      .
T Consensus       201 ~  201 (426)
T PRK12307        201 A  201 (426)
T ss_pred             h
Confidence            3

>TIGR00895 2A0115 benzoate transport

Probab=98.17  E-value=9.2e-06  Score=63.14  Aligned_cols=78  Identities=24%  Similarity=0.341  Sum_probs=62.3

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH-HHHHHHHHhhccCChHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLF-PILALCALYFIPESPHWL   76 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~-~~~~~~~~~~lpESp~~l   76 (156)
                      |...+....++.|+.|.+.|++..++.+.+..+|..+++.++..    .+||..+.+.++. .+..++..+++||+|++.
T Consensus       120 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  199 (398)
T TIGR00895       120 GGLMPNLNALVSEYAPKRFRGTAVGLMFCGYPIGAAVGGFLAGWLIPVFGWRSLFYVGGIAPLLLLLLLMRFLPESIDFL  199 (398)
T ss_pred             ccchhhHHHHHHHHcCHHhhchhHhhHhhHHHHHHHHHHHHHHHHhhcccceeehhhhhhHHHHHHHHHHHhCCCCChHH
Confidence            45567888999999999999999999999999988888777643    4899999988654 444455667789999887


Q ss_pred             HHh
Q psy15865         77 ISK   79 (156)
Q Consensus        77 ~~~   79 (156)
                      ..+
T Consensus       200 ~~~  202 (398)
T TIGR00895       200 VSK  202 (398)
T ss_pred             Hhc
Confidence            665

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=98.16  E-value=2.5e-05  Score=61.54  Aligned_cols=76  Identities=21%  Similarity=0.332  Sum_probs=59.9

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPHWLIS   78 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l~~   78 (156)
                      ..+....++.|+.|+++|++..++.+.+..+|.++++.++..    .+||+.+++.++..++. .+..+++||+|++...
T Consensus       120 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~  199 (406)
T PRK11551        120 ALPNLIALTSEAVGPRLRGTAVSLMYCGVPFGGALASVIGVLAAGDAAWRHIFYVGGVGPLLLVPLLMRWLPESRAFAQA  199 (406)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccccCHHHHHHHHHHHHHHHHHHHHHhCCCChhHHhc
Confidence            456677899999999999999999999999998888877643    58999999887765544 3445678999987654


Q ss_pred             h
Q psy15865         79 K   79 (156)
Q Consensus        79 ~   79 (156)
                      +
T Consensus       200 ~  200 (406)
T PRK11551        200 A  200 (406)
T ss_pred             c
Confidence            3

>PRK11663 regulatory protein UhpC; Provisional

Probab=98.06  E-value=2.7e-05  Score=62.41  Aligned_cols=75  Identities=12%  Similarity=0.129  Sum_probs=59.1

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCChHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPESPHWL   76 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~l   76 (156)
                      |...+....++.|+.|+++|++..++.+.+..+|.++++.+..    ..+||+.|.+.++++++. ++..++++|+|.+.
T Consensus       126 g~~~~~~~~~~~~~~~~~~rg~~~~~~~~~~~~g~~~~~~~~~~l~~~~gw~~~f~~~~i~~~~~~~~~~~~~~~~p~~~  205 (434)
T PRK11663        126 GWGWPVCAKLLTAWYSRTERGGWWAIWNTAHNVGGALIPLVVGAIALHYGWRYGMMIAGIIAIVVGLFLCWRLRDKPQAM  205 (434)
T ss_pred             HccchHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHHHHcCCCHhhc
Confidence            3445677889999999999999999999888888888776544    358999999988876654 44556789998754

>PRK03893 putative sialic acid transporter; Provisional

Probab=98.05  E-value=3.9e-05  Score=62.10  Aligned_cols=77  Identities=26%  Similarity=0.269  Sum_probs=61.3

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPHWLIS   78 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~~l~~   78 (156)
                      +..+....++.|..|++.|++..++...++.+|.++++.++..    .+||+.|++..++.++.++....+||++++...
T Consensus       124 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~p~~~~~~~~  203 (496)
T PRK03893        124 GEYGSSATYVIESWPKHLRNKASGFLISGFSIGAVVAAQVYSLVVPVWGWRALFFIGILPIIFALWLRKNLPEAEDWKEK  203 (496)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCHHHHHHHHHHHHHHHHHHHHhCCCchhhhhh
Confidence            3456677889999999999999999988888888888776553    589999998777766666666778999887544


Q ss_pred             h
Q psy15865         79 K   79 (156)
Q Consensus        79 ~   79 (156)
                      +
T Consensus       204 ~  204 (496)
T PRK03893        204 H  204 (496)
T ss_pred             c
Confidence            3

>COG2814 AraJ Arabinose efflux permease [Carbohydrate transport and metabolism]

Probab=97.92  E-value=4.7e-05  Score=60.48  Aligned_cols=69  Identities=23%  Similarity=0.352  Sum_probs=57.2

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----HHhhhhhhHHHHHHHHHHHHHHHHH-HHhhcc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQ----LFLGSFLHWRSAAILNLLFPILALC-ALYFIP   70 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~----~~~~~~~~Wr~~~~~~~~~~~~~~~-~~~~lp   70 (156)
                      |+.+++...+.+++.|+++|++..++...+.++..+++    .+++.++|||..|++.+..+++.++ .+..+|
T Consensus       116 G~f~~i~~~~a~~lvpp~~~~~Aiaiv~~G~tlA~v~GvPLGt~ig~~~GWR~~F~~ia~l~ll~~~~~~~~lP  189 (394)
T COG2814         116 GVFWSIAAALAARLVPPGKRGRALALVFTGLTLATVLGVPLGTFLGQLFGWRATFLAIAVLALLALLLLWKLLP  189 (394)
T ss_pred             HHHHHHHHHHHHHHcCccchhhHHHHHHHHHHHHHHHhccHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCC
Confidence            56678889999999999999999999888888866665    5556678999999999999887655 456688

>KOG2533|consensus

Probab=97.87  E-value=1.6e-05  Score=65.14  Aligned_cols=73  Identities=14%  Similarity=0.263  Sum_probs=60.9

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhcc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIP   70 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lp   70 (156)
                      ++.+|..-.+++-+..+++||...+++.....+|.+++.++++.          .+|||+|++.++..++. ++.++++|
T Consensus       149 s~~wP~~~~~lg~wy~~~e~g~r~~~~~a~~~~g~i~ggliA~g~~~~~~~~~~~gW~~~FiI~G~i~~~~gi~~f~~lp  228 (495)
T KOG2533|consen  149 SGGWPGVVAILGNWYGKSERGLRMGIWYASASLGNIFGGLIAYGVFKLNGSGGLAGWRWLFIIEGVITLVLGIVVFFFLP  228 (495)
T ss_pred             cccchHHHHHHHhhcChhhhhhhHHHHHHhcchhhHHHHHHHHHhhhhcCCCCcCCceeehhHHHHHHHHHHheEEEEec
Confidence            46678888999999999999999999997777777777766554          38999999999887766 55667899


Q ss_pred             CChH
Q psy15865         71 ESPH   74 (156)
Q Consensus        71 ESp~   74 (156)
                      +.|.
T Consensus       229 ~~P~  232 (495)
T KOG2533|consen  229 DNPS  232 (495)
T ss_pred             CChh
Confidence            9997

>PRK15403 multidrug efflux system protein MdtM; Provisional

Probab=97.87  E-value=0.00013  Score=58.28  Aligned_cols=70  Identities=17%  Similarity=0.259  Sum_probs=54.0

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCA-LYFIPESPH   74 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~   74 (156)
                      .+..+.++.|..|.+.|++..++......+|..+++.++.    ..+||+.|++.++.+++.++. .+++||+++
T Consensus       122 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~lg~~l~~~~gw~~~f~~~~~~~~i~~~~~~~~lp~~~~  196 (413)
T PRK15403        122 ATVGYVTVQEAFGQTKGIKLMAIITSIVLVAPIIGPLSGAALMHFVHWKVLFAIIAVMGLIAFVGLLLAMPETVK  196 (413)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHhCCCCcc
Confidence            3455678899999999999888887777777777776665    358999999998887766544 556899864

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=97.87  E-value=3e-05  Score=62.48  Aligned_cols=73  Identities=12%  Similarity=0.049  Sum_probs=58.6

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----h-hhHHHHHHHHHHHHHHHHHHH-hhccCChH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----F-LHWRSAAILNLLFPILALCAL-YFIPESPH   74 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~-~~Wr~~~~~~~~~~~~~~~~~-~~lpESp~   74 (156)
                      |+..+....++.|+.|+++|++..++...+..+|.++++.++.    . .+||+.|++.++++++..+.+ ++.+|+|+
T Consensus       146 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~i~~~l~~~l~~~~~gw~~~f~i~~~~~~~~~~~~~~~~~~~p~  224 (465)
T TIGR00894       146 GSVSPATHKIIVKWAPPKERSRLLGMSTSGFQLGTFIFLPISGWLCESWGGWPMIFYVFGIVGCAWSLLWFVFPADDPS  224 (465)
T ss_pred             ccchhhHHHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCCCCeehhhhhHHHHHHHHHHHHHhcCCcc
Confidence            4567788899999999999999999999888888888776654    2 389999999998877665444 45678875

>PRK11010 ampG muropeptide transporter; Validated

Probab=97.86  E-value=7e-05  Score=61.22  Aligned_cols=69  Identities=16%  Similarity=0.222  Sum_probs=56.4

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      +....++.|++|+++|++..++.+.++.+|.+++..++.     ..+||..|++.++..++.++..+++||+++
T Consensus       126 i~~~a~~~~~~~~~~rg~~~~i~~~g~~lG~llg~~l~~~l~~~~~GWr~~f~i~a~l~ll~~l~~~~~~e~~~  199 (491)
T PRK11010        126 IVFDAWKTDVLPAEERGAGAAISVLGYRLAMLVSGGLALWLADRYLGWQGMYWLMAALLIPCIIATLLAPEPTD  199 (491)
T ss_pred             HHHHHHHHHhcChhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            455678899999999999999999999999888875543     248999999998887777666667899864

>PRK03545 putative arabinose transporter; Provisional

Probab=97.86  E-value=5.9e-05  Score=59.37  Aligned_cols=69  Identities=16%  Similarity=0.232  Sum_probs=55.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESP   73 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp   73 (156)
                      .+....++.|+.|+++|++..++.+.+..+|.++++.++.    ..+||+.|++.++++++..+ .++++||.|
T Consensus       115 ~~~~~~~i~~~~~~~~r~~~~g~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  188 (390)
T PRK03545        115 WSITASLAIRVAPAGKKAQALSLLATGTALAMVLGLPLGRVIGQYLGWRTTFLAIGGGALITLLLLIKLLPLLP  188 (390)
T ss_pred             HHHHHHHHHHhCChhhhhhHHHHHHHHHHHHHHHHhhHHHHHHHHhcHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4566788999999999999999999988888888776654    35999999999888766543 445578765

>TIGR00893 2A0114 d-galactonate transporter

Probab=97.86  E-value=4.8e-05  Score=58.71  Aligned_cols=72  Identities=19%  Similarity=0.202  Sum_probs=57.3

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~   74 (156)
                      ...+....++.|+.|+++|++..++.+....+|.++++.++..    .+||+.+.+.++.+++..+ ..+++||+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (399)
T TIGR00893        98 PFFPGIILIVASWFPASERATAVSIFNSAQGLGGIIGGPLVGWILIHFSWQWAFIIEGVLGIIWGVLWLKFIPDPPQ  174 (399)
T ss_pred             hhhhHHHHHHHHhCCHHHHHHHHHHHHHhchHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHhhheecCCCC
Confidence            4456778899999999999999999999999999888777654    4899999998887666544 3445677653

>PRK10213 nepI ribonucleoside transporter; Reviewed

Probab=97.81  E-value=0.00011  Score=58.18  Aligned_cols=72  Identities=15%  Similarity=0.210  Sum_probs=56.0

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~   74 (156)
                      ...+....++.|+.|+++|++..++......+|.++++.++..    .+||+.|++.++.+++.++ ....+||+|+
T Consensus       124 ~~~~~~~~~i~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~~~l~~~~gw~~~f~~~~~l~~~~~l~~~~~~p~~~~  200 (394)
T PRK10213        124 GFWAMSASLTMRLVPPRTVPKALSVIFGAVSIALVIAAPLGSFLGELIGWRNVFNAAAVMGVLCIFWIIKSLPSLPG  200 (394)
T ss_pred             HHHHHHHHHHHHHcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHCCCCCc
Confidence            3457788899999999999999999888888888777776653    5999999998877665443 3345788763

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=97.79  E-value=0.00016  Score=57.94  Aligned_cols=72  Identities=15%  Similarity=0.166  Sum_probs=55.2

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILA-LCALYFIPESPHW   75 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~   75 (156)
                      ..+....++.|+.|+++||+..++.+.+..+|..+++.+..     ..+||..|++.++++++. ++..+++||+|+.
T Consensus       135 ~~~~~~~~i~~~~~~~~rg~~~~~~~~~~~~g~~~~~~l~~~~~~~~~~w~~~f~~~~~~~~i~~~~~~~~~~~~~~~  212 (438)
T TIGR00712       135 GWPPCGRTMVHWWSQSERGTIVSIWNCAHNIGGGIPPLLVLLGMAWFNDWHAALYFPAICAIIVALFAFAMMRDTPQS  212 (438)
T ss_pred             chHHHHHHHHHhcCcccchhHHHHHHHHHHhHhHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHHHhccCCHHh
Confidence            44556778899999999999999998888887776654322     358999999988887664 4556678998864

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>TIGR00880 2_A_01_02 Multidrug resistance protein

Probab=97.77  E-value=0.00016  Score=47.67  Aligned_cols=69  Identities=25%  Similarity=0.430  Sum_probs=52.9

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCC
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPES   72 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpES   72 (156)
                      ..+....++.|..|.+.|++..++.+....+|..+++.+...    .+|++.+.+..+..++..+ ..++.||+
T Consensus        68 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  141 (141)
T TIGR00880        68 ALVAGAALIADIYPPEERGVALGLMSAGIALGPLLGPPLGGVLAQFLGWRAPFLFLAILALAAFILLAFLLPET  141 (141)
T ss_pred             HHHhHHHHHHHHCChhhhhHHHHHHHHhHHHHHHHhHHhHHHHhcccchHHHHHHHHHHHHHHHHHHhhcCCCC
Confidence            345667788999999999999999988888888887776554    4899999888877666544 34455664

>TIGR00901 2A0125 AmpG-related permease

Probab=97.74  E-value=0.00015  Score=56.19  Aligned_cols=68  Identities=15%  Similarity=0.065  Sum_probs=54.2

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh--------HHHHHHHHHHHHHHHHHHHh-hccCC
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH--------WRSAAILNLLFPILALCALY-FIPES   72 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~--------Wr~~~~~~~~~~~~~~~~~~-~lpES   72 (156)
                      +....++.|++|+++|++..++.+.++.+|.+++..++..    .+        ||.+|++.++..++..+..+ ..||+
T Consensus       102 ~~~~a~~~~~~~~~~r~~~~~~~~~~~~~G~~~~~~l~~~l~~~~g~~~~~~~~wr~~f~i~ai~~l~~~~~~~~~~~e~  181 (356)
T TIGR00901       102 IALDAWRLEILSDEELGYGSTIYIVGYRAGMLLSGSLALVLASPEFANTGLITLWGYIFFWTALLILPGLLVTLFLAKEP  181 (356)
T ss_pred             HHHHHHHHHhCCHhhhchHHHHHHHHHHHHHHHHHHHHHHHhhhcccccccccccHHHHHHHHHHHHHHHHHHHHhccCC
Confidence            4456678999999999999999999999999988777643    45        99999999988777655544 46775


Q ss_pred             h
Q psy15865         73 P   73 (156)
Q Consensus        73 p   73 (156)
                      .
T Consensus       182 ~  182 (356)
T TIGR00901       182 Q  182 (356)
T ss_pred             C
Confidence            4

>PRK11195 lysophospholipid transporter LplT; Provisional

Probab=97.73  E-value=0.00039  Score=55.07  Aligned_cols=72  Identities=21%  Similarity=0.081  Sum_probs=55.0

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      ...|....++.|+.|+++|+++.++.+....+|.++++.++...   .|+..+.+.+...++..+..+++||+|.
T Consensus       104 ~~~pa~~a~i~~~~~~~~~~~a~~~~~~~~~~~~~~Gp~lgG~l~~~~~~~~~~i~~~~~~~~~~~~~~l~~~~~  178 (393)
T PRK11195        104 AYSPAKYGILTELLPGEKLVKANGWMEGSTIAAILLGTVLGGALADPHAEAALAVCALIYLLAALFNLFIPRLGA  178 (393)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCCCcc
Confidence            45677888999999999999999999999888888888887642   4666666555554444555567899874

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=97.73  E-value=0.00019  Score=56.84  Aligned_cols=69  Identities=16%  Similarity=0.239  Sum_probs=55.6

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      +....++.|+.|+++|++..++...++.+|.+++..++..     .+||..|++.++..++..+..+++||+++
T Consensus       113 ~~~~al~~~~~~~~~r~~~~~~~~~g~~~g~i~g~~l~~~l~~~~~gw~~~f~i~a~~~l~~~l~~~~~~e~~~  186 (402)
T PRK11902        113 IVFDAYSTDVLHPEERGAGAAVKVLGYRLAMLVSGGLALWLADRVLGWGNTYLLMAGLMLAGALTTLWAPEPEV  186 (402)
T ss_pred             HHHHHHHHHhcChhhhhHHHHHHHHHHHHHHHHHhHHHHHHHhcccCHHHHHHHHHHHHHHHHHHHHhcCCCcc
Confidence            4556788999999999999999999989988887765432     48999999988877766666677888764

>TIGR01299 synapt_SV2 synaptic vesicle protein SV2

Probab=97.71  E-value=0.00016  Score=62.09  Aligned_cols=71  Identities=7%  Similarity=-0.051  Sum_probs=56.8

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      +..++..+|++|+.|.+.|++..++......+|.++++.++..   .....+|++.++..++..++..++||+.
T Consensus       664 ~~~~~~~a~~aEl~Pt~~Rgta~Gi~~~~~rlGaiigp~i~g~L~~~~~~~pf~i~a~~lll~~ll~~~LPET~  737 (742)
T TIGR01299       664 AAWNALDVLTVELYPSDKRATAFGFLNALCKAAAVLGILIFGSFVGITKAAPILFASAALACGGLLALKLPDTR  737 (742)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhCCCCc
Confidence            3456778899999999999999999999999999999988653   2446677777777676666666789974

This model describes a tightly conserved subfamily of the larger family of sugar (and other) transporters described by pfam model pfam00083. Members of this subfamily include closely related forms SV2A and SV2B of synaptic vesicle protein from vertebrates and a more distantly related homolog (below trusted cutoff) from Drosophila melanogaster. Members are predicted to have two sets of six transmembrane helices.

>TIGR00805 oat sodium-independent organic anion transporter

Probab=97.68  E-value=0.00015  Score=61.16  Aligned_cols=71  Identities=17%  Similarity=0.402  Sum_probs=56.0

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------------------------h-hHHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------------------------L-HWRSAAILN   55 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------------------------~-~Wr~~~~~~   55 (156)
                      |..++....|+.|+.|++.|+.+.++.+....+|.+++++++..                         . +|+..|++.
T Consensus       187 ~~~~~~~~~~i~d~~~~~~~~~~~~i~~~~~~iG~~lG~llgg~l~~~~~d~~~~~~~~~~l~~~dprWiGaWwl~Fli~  266 (633)
T TIGR00805       187 TPIFPLGISYIDDFAKSKNSPLYIGILESIAVFGPAFGYLLGSFCLQIYVDTGSVNTEDVILTPTDPRWIGAWWIGFLIC  266 (633)
T ss_pred             CcchhcCchhhhccCCccccHHHHHHHHHHHHhhhHHHHHHHHHHHhcccccccCCCCCCCCCCCCccHHHHHHHHHHHH
Confidence            45567888999999999999999999999999999888777542                         1 388889888


Q ss_pred             HHHHHHHHHHHhhccCC
Q psy15865         56 LLFPILALCALYFIPES   72 (156)
Q Consensus        56 ~~~~~~~~~~~~~lpES   72 (156)
                      +++.++..+.++++|+.
T Consensus       267 g~l~~l~~v~l~~~p~~  283 (633)
T TIGR00805       267 GGVALLTSIPFFFFPKA  283 (633)
T ss_pred             HHHHHHHHHHHHhCccc
Confidence            88877765555566654

Proteins of the OAT family catalyze the Na+-independent facilitated transport of organic anions such as bromosulfobromophthalein and prostaglandins as well as conjugated and unconjugated bile acids (taurocholate and cholate, respectively). These transporters have been characterized in mammals, but homologues are present in C. elegans and A. thaliana. Some of the mammalian proteins exhibit a high degree of tissue specificity. For example, the rat OAT is found at high levels in liver and kidney and at lower levels in other tissues. These proteins possess 10-12 putative a-helical transmembrane spanners. They may catalyze electrogenic anion uniport or anion exchange.

>TIGR00710 efflux_Bcr_CflA drug resistance transporter, Bcr/CflA subfamily

Probab=97.67  E-value=0.00025  Score=55.10  Aligned_cols=71  Identities=17%  Similarity=0.224  Sum_probs=55.2

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHH-HHHhhccCChH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILAL-CALYFIPESPH   74 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~-~~~~~lpESp~   74 (156)
                      ..+....++.|+.|+++|++..++.+....+|..+++.++..    .+||+.+++.++..++.. +..+++||+++
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  185 (385)
T TIGR00710       110 GSVISQALVRDIYPGEELSRIYSILMPVLALAPAVAPLLGGYILVWLSWHAIFAFLSLAGILLSALIFFILPETLP  185 (385)
T ss_pred             HHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            456677899999999999999999988888888877766553    589999998887766553 34456788754

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 12 membrane-spanning regions. Members with known activity include Bcr (bicyclomycin resistance protein) in E. coli, Flor (chloramphenicol and florfenicol resistance) in Salmonella typhimurium DT104, and CmlA (chloramphenicol resistance) in Pseudomonas sp. plasmid R1033.

>TIGR00711 efflux_EmrB drug resistance transporter, EmrB/QacA subfamily

Probab=97.67  E-value=7.8e-05  Score=59.99  Aligned_cols=72  Identities=22%  Similarity=0.418  Sum_probs=56.6

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~   74 (156)
                      ...+....++.|+.|+++|++..++..++..+|..+++.++..    .+||+.|++...++++.++ ..+++||.++
T Consensus       106 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~w~~~f~~~~~~~~~~~~~~~~~~~~~~~  182 (485)
T TIGR00711       106 PLIPLSFSTLLNIYPPEKRGRAMAIWGLTVLVAPALGPTLGGWIIENYHWRWIFLINVPIGIIVVVVAFFILPRDKP  182 (485)
T ss_pred             hHHHHHHHHHHHHCCHHHHHHHHHHHHHHHHHHhhhhhccHhHhccCcCceehhhhhhHHHHHHHHHHHHHcCCccc
Confidence            3456778899999999999999999999999888888777654    5899999998887665543 4455777543

This subfamily of drug efflux proteins, a part of the major faciliator family, is predicted to have 14 potential membrane-spanning regions. Members with known activities include EmrB (multiple drug resistance efflux pump) in E. coli, FarB (antibacterial fatty acid resistance) in Neisseria gonorrhoeae, TcmA (tetracenomycin C resistance) in Streptomyces glaucescens, etc. In most cases, the efflux pump is described as having a second component encoded in the same operon, such as EmrA of E. coli.

>PTZ00207 hypothetical protein; Provisional

Probab=97.66  E-value=0.00033  Score=58.67  Aligned_cols=86  Identities=12%  Similarity=-0.021  Sum_probs=58.7

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH-HHHhhhh--hhHHHHHHHHHHHHHHH-HHHHh--hccCChHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS-QLFLGSF--LHWRSAAILNLLFPILA-LCALY--FIPESPHWLIS   78 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l-~~~~~~~--~~Wr~~~~~~~~~~~~~-~~~~~--~lpESp~~l~~   78 (156)
                      .+.+...+.+++| ++||+..++...+..+|..+ +.+...+  .+|+..|++.++.+++. ++..+  ..|++|+|...
T Consensus       138 ~~~~~~~i~~~Fp-~~RG~a~Gi~~~~~gLGsaI~~~l~~~l~~~~~~~~fl~l~vl~~vv~ll~~~~vr~p~~~~~~~~  216 (591)
T PTZ00207        138 DLGAVVTVLSVFP-SNRGAVVAIMKTFTGLGSAILGSIQLAFFSDNTSAYFFFLMSFALVVGILAIVFMRLPPFHLTGYQ  216 (591)
T ss_pred             HHHHHHHHHHhCh-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHHHHHHHHHHHHHHHHHHhheeCCcchhhccc
Confidence            3456667889986 78999999999999999975 3333333  37777777776665544 33333  35888888877


Q ss_pred             hcChhhHhHHHHH
Q psy15865         79 KYLPIGLSALATS   91 (156)
Q Consensus        79 ~~~~~~a~~~l~~   91 (156)
                      +++.+++++.+++
T Consensus       217 ~~~~~~~~~~~~~  229 (591)
T PTZ00207        217 EKHLDEEEKAQRL  229 (591)
T ss_pred             ccCCCHHHHHHHh
Confidence            7777775544333

>PF07690 MFS_1: Major Facilitator Superfamily; InterPro: IPR011701 Among the different families of transporter, only two occur ubiquitously in all classifications of organisms

Probab=97.63  E-value=9.6e-05  Score=56.52  Aligned_cols=72  Identities=24%  Similarity=0.395  Sum_probs=56.4

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~   74 (156)
                      ...+....++.|+.|+++|++..++.+....+|.++++.++..    .+||+.+++.++..++..++ .+++++.|.
T Consensus       101 ~~~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~~~~~~~~~~~~~~~~~~il~~~~~~~~~~  177 (352)
T PF07690_consen  101 FFSPASNALIADWFPPEERGRAFGILSAGFSLGSILGPLLGGFLISYFGWRWAFLISAILSLIAAILFILFLPEPPP  177 (352)
T ss_dssp             HHHHHHHHHHHHCCCTCCHHHHHHHHHHHHHHHHHHHHHHHHHCCCHCHHCCHHHHHHHHHHHHHHHHHCCC---ST
T ss_pred             cccccccccccccchhhhhhhccccccchhhhhhhcccchhhhhhhccccccccccccchhhhhhhhHhhhhhhccc
Confidence            3456778899999999999999999999999999998887664    48999999999988877553 345555543

These are the ATP-Binding Cassette (ABC) superfamily and the Major Facilitator Superfamily (MFS). The MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients [, ].; GO: 0055085 transmembrane transport, 0016021 integral to membrane; PDB: 2GFP_B 3O7P_A 3O7Q_A 1PW4_A.

>PRK10091 MFS transport protein AraJ; Provisional

Probab=97.56  E-value=0.00031  Score=55.27  Aligned_cols=69  Identities=17%  Similarity=0.282  Sum_probs=52.7

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESP   73 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp   73 (156)
                      .+....++.|+.++++|++..++...+..+|..+++.++.    ..+||+.|.+.++.+++.++ .++++||.+
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~gwr~~f~~~~~~~~~~~~~~~~~lp~~~  182 (382)
T PRK10091        109 FGVGAIVLSKIIKPGKVTAAVAGMVSGMTVANLLGIPLGTYLSQEFSWRYTFLLIAVFNIAVLASIYFWVPDIR  182 (382)
T ss_pred             HHHHHHHHHHhCChHHhhHHHHHHHHHHHHHHHHhccHHHHHhhhccHHHHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            4566778899999999999998888888787777665543    35899999999887665543 455688865

>PRK14995 methyl viologen resistance protein SmvA; Provisional

Probab=97.55  E-value=0.00036  Score=56.99  Aligned_cols=69  Identities=14%  Similarity=0.211  Sum_probs=51.3

Q ss_pred             hhHHHHHHhh-cCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          6 VLVLTYVAEI-TQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~-~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      +.....+.+. .|+++|++..++....+.+|..+++.++..    .+||+.|++....+++. ++..+++||.|.
T Consensus       113 ~~~~~~l~~~~~~~~~r~~~~g~~~~~~~~g~~~gp~lgg~l~~~~gwr~~f~i~~~~~~~~~~l~~~~l~~~~~  187 (495)
T PRK14995        113 PATLAGIRATFTEEKQRNMALGVWAAVGSGGAAFGPLVGGILLEHFYWGSVFLINVPIVLVVMGLTARYVPRQAG  187 (495)
T ss_pred             HHHHHHHHHHcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhccCChHHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3344455555 478999999999999998888888887664    59999999987766554 445566888763

>PRK11102 bicyclomycin/multidrug efflux system; Provisional

Probab=97.55  E-value=0.00037  Score=54.24  Aligned_cols=69  Identities=16%  Similarity=0.318  Sum_probs=54.8

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      .+....++.|+.|+++|++..++.+....+|..+++.++..    .+||+.+.+.++.+++. ++..+++||++
T Consensus        97 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  170 (377)
T PRK11102         97 SVVINALMRDMFPKEEFSRMMSFVTLVMTIAPLLAPIIGGWLLVWFSWHAIFWVLALAAILAAALVFFFIPETL  170 (377)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcChHHHHHHHHHHHHHHHHHHHHhCCccC
Confidence            45567789999999999999999988888888888777553    58999999888776665 44456788875

>TIGR00900 2A0121 H+ Antiporter protein

Probab=97.55  E-value=0.0004  Score=53.29  Aligned_cols=63  Identities=5%  Similarity=-0.066  Sum_probs=50.6

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..+....++.|+.|+++|++..++.+....+|.++++.++..    .+||+.+++..+..++..+..
T Consensus       109 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~  175 (365)
T TIGR00900       109 FTPAYQAMLPDLVPEEQLTQANSLSQAVRSLFYIVGPGIGGLMYATLGIKWAIWVDAVGFAISALLI  175 (365)
T ss_pred             HHHHHHHHHHhcCCHHHHHHHHhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            345677899999999999999999999999988888777653    589999998887766554433

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=97.51  E-value=0.00066  Score=54.68  Aligned_cols=72  Identities=17%  Similarity=0.197  Sum_probs=53.2

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHH-HHHHHhh----hhhhHHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLFLG----SFLHWRSAAILNLLFPILA-LCALYFIPESPHW   75 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~-~l~~~~~----~~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~   75 (156)
                      ..+.....+.|++|++.|++..++.+.+..+|. +.+++++    ...+||+.|++.++++++. ++..+++||+|+.
T Consensus       137 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~l~~~~~~~~~gw~~~f~i~~~~~~~~~~l~~~~~~~~~~~  214 (452)
T PRK11273        137 GWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGLPPLLFLLGMAWFNDWHAALYMPAFAAILVALFAFAMMRDTPQS  214 (452)
T ss_pred             cchHHHHHHHHhCChHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHccCCHhh
Confidence            345556778899999999999999888888775 3444332    2348999999988776654 5556778999865

>PRK10473 multidrug efflux system protein MdtL; Provisional

Probab=97.38  E-value=0.001  Score=52.33  Aligned_cols=70  Identities=19%  Similarity=0.239  Sum_probs=54.1

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      ..+....++.|..|+++|++..++.+....+|.++++.++..    .+||+.+++.++.+++. ++..+++||++
T Consensus       108 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~i~~~~~~~i~~~l~~~~g~~~~~~~~~~~~~i~~~~~~~~~~~~~  182 (392)
T PRK10473        108 CYVVAFAILRDTLDDRRRAKVLSLLNGITCIIPVLAPVLGHLIMLKFPWQSLFYTMAAMGILVLLLSLFILKETR  182 (392)
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCcChHHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            345677889999999999999999888888877777766543    48999999988776654 44456678875

>TIGR00899 2A0120 sugar efflux transporter

Probab=97.35  E-value=0.00067  Score=52.59  Aligned_cols=72  Identities=14%  Similarity=0.048  Sum_probs=47.9

Q ss_pred             cchhHHHHHHhhcCcchhHHH--HHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCChHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGML--SATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESPHW   75 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~--~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~~   75 (156)
                      ..+....++.|+.|++.|+..  .+....+..+|..+++.++.    ..+||+.|++.+++.++..+ ..+++||+|+.
T Consensus       104 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~ig~~~~~~l~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~~  182 (375)
T TIGR00899       104 ANPQLFALAREHADRTGREAVMFSSVMRAQISLAWVIGPPLAFWLALGFGFTVMFLTAALAFVLCGVLVWLFLPSYPRG  182 (375)
T ss_pred             hHHHHHHHHHHHhhhcchhhHHHHHHHHHHHhHHHHHhhhHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHhCCCcccC
Confidence            345556677888887777643  35555555566666655543    45899999999888666544 44568998864

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>PRK10489 enterobactin exporter EntS; Provisional

Probab=97.33  E-value=0.00068  Score=53.82  Aligned_cols=69  Identities=17%  Similarity=0.089  Sum_probs=54.2

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      +....++.|+.|+++|++..++.+....+|..+++.++..    .+|++.+++.++..++..+..+.+||+++
T Consensus       129 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~l~~~~~  201 (417)
T PRK10489        129 TALLAATPALVGRENLMQAGAITMLTVRLGSVISPALGGLLIAAGGVAWNYGLAAAGTFITLLPLLRLPALPP  201 (417)
T ss_pred             HHHhhhhhhccCHHHHHHHHHHHHHHHhHHHHhHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHhCCCCCC
Confidence            3445677899999999999999888888888888777653    48999999888877776666677888754

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=97.30  E-value=0.00019  Score=55.34  Aligned_cols=73  Identities=14%  Similarity=0.119  Sum_probs=56.1

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHH-Hhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-FLGS----FLHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~-~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      |...+....++.|+.|+++|++..++.+.+..+|.++++ +++.    ..+||+.+++.++..++. ++..++++|+|+
T Consensus        98 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (379)
T TIGR00881        98 GMGWPPCGRTVTKWFSRSERGTWVSFWNCSHNVGGGLLPPLVLFGIAELYSWHWVFIVPGIIAIIVSLICFLLLRDSPQ  176 (379)
T ss_pred             cccCCchHHHHHHhcCHhhheeeEeehhccchhHHHHHHHHHHHHHHhcCCchhHHHHHHHHHHHHHHHHheeeCCCcc
Confidence            445677888999999999999999988888888888877 3433    358999999888776554 445566788764

>KOG2532|consensus

Probab=97.28  E-value=0.00044  Score=56.36  Aligned_cols=73  Identities=16%  Similarity=0.263  Sum_probs=58.8

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHHHH-hhccCChH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALCAL-YFIPESPH   74 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~~~-~~lpESp~   74 (156)
                      |..++....+.+.|+|+++|++..++...+..+|.+++..++..     .||+.+|++.++.+++..+++ ++.-|+|.
T Consensus       143 g~~~pa~~~i~~~W~P~~Ers~~~ail~~g~q~g~v~~mp~sg~lc~s~~GW~sifY~~g~~g~i~~~~w~~~~~d~P~  221 (466)
T KOG2532|consen  143 GVLFPAIGSILAKWAPPNERSTFIAILTAGSQLGTIITMPVSGLLCESSLGWPSIFYVFGIVGLIWFILWFLFYSDSPS  221 (466)
T ss_pred             hHHHhhhhceeeeECCHHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccCCCCchHHHHHHHHHHHHHHHHHHHhcCCcc
Confidence            45677788888999999999999999888888888887655442     699999999999988876655 44577775

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=97.27  E-value=0.0012  Score=53.82  Aligned_cols=66  Identities=15%  Similarity=0.186  Sum_probs=44.3

Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHH----HHhhh---------hhhHHHHHHHHHHHHHHHHHHHhhc-cCCh
Q psy15865          8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQ----LFLGS---------FLHWRSAAILNLLFPILALCALYFI-PESP   73 (156)
Q Consensus         8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~----~~~~~---------~~~Wr~~~~~~~~~~~~~~~~~~~l-pESp   73 (156)
                      ...+++|+.|++.||+..++...+..+|..++    +.+..         ..+||+.|++.++++++..+..+++ ++.|
T Consensus       144 ~~~~i~~~~~~~~rg~a~g~~~~~~~~g~~~~~~~~~~i~~~~~~~~~~~~~gWr~~f~i~g~l~l~~~l~~~~~~~~~p  223 (476)
T PLN00028        144 CQYWMSTMFNGKIVGTANGIAAGWGNLGGGVTQLLMPLVFPLIKDAGAPSFTAWRIAFFVPGLLHIIMGILVLTLGQDLP  223 (476)
T ss_pred             HHHHHHHhcChhheeHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCcchhhhHHHHHHHHHHHHHHHHHHHHHcCcCC
Confidence            44578999999999999998765544444443    33321         1489999999988877655444443 4444

>KOG2615|consensus

Probab=97.26  E-value=0.00029  Score=55.81  Aligned_cols=70  Identities=13%  Similarity=0.293  Sum_probs=52.5

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh----------HHHHHHHHHHHHHH-HHHHHhhccC
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH----------WRSAAILNLLFPIL-ALCALYFIPE   71 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~----------Wr~~~~~~~~~~~~-~~~~~~~lpE   71 (156)
                      ++..+.-+|++|+.+.++|+..++.+...+.+|.++++.++.++.          .-.+-++..+++.. .+.+.+|+||
T Consensus       136 gnl~v~rAiisdV~sek~r~l~ms~v~~a~~lGfilGPmIGgyla~f~~~~g~~p~alP~~~v~i~a~~~v~~~~~~lpE  215 (451)
T KOG2615|consen  136 GNLSVIRAIISDVVSEKYRPLGMSLVGTAFGLGFILGPMIGGYLAQFSSISGSYPFALPCLLVFILAAGDVTFFPWFLPE  215 (451)
T ss_pred             CchHHHHHHHHhhcChhhccceeeeeehhhhcchhhcchhhhHHHhhHhhhccCchHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            466788899999999999999999999999999988888877532          22223333444444 4556789999


Q ss_pred             C
Q psy15865         72 S   72 (156)
Q Consensus        72 S   72 (156)
                      |
T Consensus       216 T  216 (451)
T KOG2615|consen  216 T  216 (451)
T ss_pred             c
Confidence            9

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=97.26  E-value=0.0016  Score=49.39  Aligned_cols=69  Identities=23%  Similarity=0.279  Sum_probs=54.4

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIP   70 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lp   70 (156)
                      |...+....++.|+.|+++|++..++.+....+|..+++.++..    .+||+.+.+.+++.++..+..++++
T Consensus       102 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  174 (352)
T cd06174         102 GALYPAAAALIAEWFPPKERGRALGLFSAGFGLGALLGPLLGGLLAESLGWRWLFLILAILGLLLALLLLFLL  174 (352)
T ss_pred             ccccHhHHHHHHHhCCccchhhhhhHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34567788999999999999999999999999999888877664    3799999988887666544443333

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>PRK15402 multidrug efflux system translocase MdfA; Provisional

Probab=97.26  E-value=0.0024  Score=50.45  Aligned_cols=70  Identities=14%  Similarity=0.189  Sum_probs=50.4

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHH-HHhhccCChH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALC-ALYFIPESPH   74 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~   74 (156)
                      .++...++.|..|++.|++..++......+|..+++.++.    ..+||+.+++.++.+++.++ ..+++||+++
T Consensus       119 ~~~~~~~i~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~  193 (406)
T PRK15402        119 GAVGYAAIQESFEEADAIKITALMANVALLAPLLGPLVGAALIHVLPWRGMFVLFAALAALSFFGLWRAMPETAG  193 (406)
T ss_pred             HHHHHHHHHHHhChhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccCccHHHHHHHHHHHHHHHHHHHhCCCCCc
Confidence            4567788899999999988777766665566666655543    35899999988877666544 4456788864

>TIGR00886 2A0108 nitrite extrusion protein (nitrite facilitator)

Probab=97.24  E-value=0.0013  Score=50.91  Aligned_cols=71  Identities=15%  Similarity=0.195  Sum_probs=46.2

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----h----------hhhHHHHH-HHHHHH-HHHHHHHHh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----S----------FLHWRSAA-ILNLLF-PILALCALY   67 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~----------~~~Wr~~~-~~~~~~-~~~~~~~~~   67 (156)
                      ..+....+++|+.|+++|+...++...+..+|..++..++    .          ..+||+.+ +...+. .++.++...
T Consensus       107 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~  186 (366)
T TIGR00886       107 SFASCMPWISFFFPKKIQGTALGLAAGWGNMGGGVAQFVMPPIIGSLIFGAGLPAHLAWGWAFVIVPAGILLLPALLIFF  186 (366)
T ss_pred             hhHhHHHHHHHhcCHhhhhHHHHHHHHHhHHHHHHHHHHHHHHHHHHHhcccccccccccchhHHHHHHHHHHHHHHHHH
Confidence            3455677899999999999999988755555555544333    2          12799998 443433 334444455


Q ss_pred             hccCChH
Q psy15865         68 FIPESPH   74 (156)
Q Consensus        68 ~lpESp~   74 (156)
                      +.+|+|+
T Consensus       187 ~~~~~~~  193 (366)
T TIGR00886       187 VGADTPP  193 (366)
T ss_pred             hcccCCc
Confidence            6677764

>COG2271 UhpC Sugar phosphate permease [Carbohydrate transport and metabolism]

Probab=97.24  E-value=0.00023  Score=56.87  Aligned_cols=72  Identities=15%  Similarity=0.237  Sum_probs=58.6

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh--h-h---hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG--S-F---LHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~--~-~---~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      ...|.+.-.+..++++++||+..++++.+..+|..+.+.+.  . .   .+||..|++.++.++++ ++.++.+.++|+
T Consensus       133 ~Gwpp~~~~i~~Wfsr~eRG~~~siWn~shNiGGal~~~~~~la~~~~~~~w~~~f~~pgiiaiival~~~~~~rd~Pq  211 (448)
T COG2271         133 MGWPPCARTITHWFSRKERGTWWSIWNTSHNIGGALAPLVALLAFFAFHGGWRAAFYFPGIIAIIVALILLFLLRDRPQ  211 (448)
T ss_pred             CCCcHHHHHHHHHcCccccCceEEEehhhhhcccchHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            34567778899999999999999999999999887766554  2 2   38999999999998776 555667888886

>KOG1330|consensus

Probab=97.22  E-value=2.7e-05  Score=62.69  Aligned_cols=72  Identities=15%  Similarity=0.206  Sum_probs=59.3

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      ...++++.+++|.+|...|++..+++++...+|..++++++..     ..|||.|.+.++.+++. ++.+++++|..|
T Consensus       137 s~~~ia~s~IaD~f~~~~Rs~~~~ify~~ipvGsglG~vvgs~va~~~~~Wr~af~~~avl~vi~~~L~~~f~~eP~r  214 (493)
T KOG1330|consen  137 SYSPIAPSLIADSFPDDKRSRVLGIFYFAIPVGSGLGYVVGSVVASLTFWWRWAFRGSAVLGVIVGLLVFLFVREPER  214 (493)
T ss_pred             hhcccchhHhhhcCcchhhhHHHHHhhhhcccccceeEEeeeeeccCccceEEEEEeehHHHHHHHHHHHhhccCccc
Confidence            4567889999999999999999999999999998888777654     24999999999998876 445566777654

>TIGR00889 2A0110 nucleoside transporter

Probab=97.21  E-value=0.0016  Score=52.11  Aligned_cols=68  Identities=15%  Similarity=0.241  Sum_probs=52.0

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lpES   72 (156)
                      .+....++.|..|++.||+..++.+ ..+.+|.++++.++..          .+|+..|.+.++..++. .+..++++|+
T Consensus       326 ~~~~~~~i~~~~p~~~~g~~~g~~~~~~~~lg~~iGp~l~G~l~~~~g~~~~~~~~~~f~~~~~~~~i~~~l~~~~~~~~  405 (418)
T TIGR00889       326 NISGSVFVEKEVPVHIRASAQGLFTLMCNGFGSLLGYILSGVMVEKMFAYGTFDWQTMWLFFAGYIAILAVLFMIFFKYS  405 (418)
T ss_pred             HHHHHHHHHHHCCHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHhccccCCchHHHHHHHHHHHHHHHHHHHHHhCCc
Confidence            3556778999999999999999986 5677888887777653          25999998888776654 4455667887

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

>PRK12382 putative transporter; Provisional

Probab=97.19  E-value=0.0012  Score=51.80  Aligned_cols=68  Identities=18%  Similarity=0.213  Sum_probs=49.5

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      +....++.|..|+++|++..++.+.+..+|.++++.++.    ..+||..+.+..+..++.++....+||.+
T Consensus       131 ~~~~~~~~~~~~~~~r~~a~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (392)
T PRK12382        131 TGALTWGLGLVGPKHSGKVMSWNGMAMYGALAAGAPLGLLLHSHFGFAALALTTMVLPLLAWAFNGTVRKVP  202 (392)
T ss_pred             HHHHHHHHhhCCccccchhhhHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHhccCCC
Confidence            445567889999999999999988888877777766654    35899988777666555544444556653

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=97.14  E-value=0.0014  Score=58.60  Aligned_cols=70  Identities=13%  Similarity=0.076  Sum_probs=57.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      ..++...++.++.+.+.|+.+.++.+++..+|.++++.++..    .+|++.|++..+..++.++..+++|+++
T Consensus       125 ~~p~~~a~l~~~~~~~~~~~a~~~~~~~~~ig~~igp~l~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1140)
T PRK06814        125 FGPIKYSILPDHLNKDELLGANALVEAGTFIAILLGTIIGGLATISGNFVILVALLMGIAVLGWLASLFIPKTG  198 (1140)
T ss_pred             hchHHHHhhHhhcCccccchhhHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHhhCCCCC
Confidence            457788899999999999999999999999999998888765    4899998666666666666667777764

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=97.11  E-value=0.0015  Score=51.36  Aligned_cols=70  Identities=14%  Similarity=0.052  Sum_probs=50.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      ..+....++.|..|.++|++..++.+....+|.++++.++.    ..+||..+++..+.+++.++.....|+++
T Consensus       129 ~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~l~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  202 (399)
T PRK05122        129 AGTGSILWGIGRVGALHTGRVISWNGIATYGALAIGAPLGVLLYHWGGLAGLGLLIMLLALLGLLLARPRPAVP  202 (399)
T ss_pred             hcchHHHHHHhhcChhhhccchhhhhhhhhHHHHHHHHHHHHHHHcccHHHHHHHHHHHHHHHHHHHhcCCCCC
Confidence            34555677889999999999998887777777666665543    45899998888777665555444456543

>PRK10504 putative transporter; Provisional

Probab=97.10  E-value=0.0023  Score=51.60  Aligned_cols=71  Identities=15%  Similarity=0.183  Sum_probs=53.5

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESP   73 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp   73 (156)
                      +..+....++.|..|+++|+...++......+|..+++.++..    .+||+.|.+....+++..+. ....|+++
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~g~l~~~~gw~~~f~~~~~~~~l~~~~~~~~~~~~~  189 (471)
T PRK10504        114 MMVPVGRLTVMKIVPREQYMAAMTFVTLPGQVGPLLGPALGGLLVEYASWHWIFLINIPVGIIGAIATLMLMPNYT  189 (471)
T ss_pred             HHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHhCCCcc
Confidence            3456778889999999999999999888888888887776543    58999999988776655443 34456543

>PRK10077 xylE D-xylose transporter XylE; Provisional

Probab=97.08  E-value=0.0034  Score=50.52  Aligned_cols=68  Identities=18%  Similarity=0.134  Sum_probs=49.0

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----------hhhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----------FLHWRSAAILNLLFPILALC-ALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----------~~~Wr~~~~~~~~~~~~~~~-~~~~lpESp   73 (156)
                      ++.+++++|..|++.|+...++......+|.+++..+..          ..+|+..+++.++.+++..+ ..+++||+.
T Consensus       383 ~~~~~~~~e~~p~~~r~~~~g~~~~~~~~g~~~~~~~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~e~~  461 (479)
T PRK10077        383 PVCWVLLSEIFPNAIRGKALAIAVAAQWIANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPETK  461 (479)
T ss_pred             chhHHHhHhhCChhHHHHHHHHHHHHHHHHHHHHHHHhHHHHhccchhhhccCccHHHHHHHHHHHHHHHHHhccccCC
Confidence            567789999999999999999988887777776643322          24677777777766555433 445678864

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=97.04  E-value=0.0036  Score=49.68  Aligned_cols=68  Identities=22%  Similarity=0.319  Sum_probs=51.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILAL-CALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~-~~~~~lpES   72 (156)
                      .+....++.|..|+++|++..++......+|..+++.++..   .+||+.|++.++..++.. +..+++||.
T Consensus       117 ~~~~~~~~~~~~~~~~~~~a~~~~~~~~~~g~~ig~~l~g~l~~~g~~~~f~~~~~~~~~~~i~~~~~~~~~  188 (400)
T PRK11646        117 DPPRTALVIKLIRPHQRGRFFSLLMMQDSAGAVIGALLGSWLLQYDFRLVCATGAVLFVLAAAFNAWLLPAY  188 (400)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHhCCcc
Confidence            35566788999999999999999888888887777766543   599999998887765543 334556763

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=97.03  E-value=0.00047  Score=55.78  Aligned_cols=72  Identities=13%  Similarity=0.111  Sum_probs=54.2

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      ...+....+++|++|+++||+..++.+.+..+|.+++..+...       .+||..|.+.++++++. ++.+++++++|.
T Consensus       138 ~~~~~~~~~i~~~~~~~~rg~a~gi~~~~~~lG~~l~~~i~~~~~~~~~~~~~~~~f~~~g~~~~~~~i~~~~~~~~~p~  217 (467)
T PRK09556        138 TGGPCSYSTITRWTPRRKRGRFLGFWNISHNLGGAGAGGVALWGANYFFDGHVIGMFIFPSIIALIIGFIGLRYGSDSPE  217 (467)
T ss_pred             ccchHHHHHHHHHcCccceeeeEEeeecccchhhhHHHHHHHHHHHhhccCcchhHHHHHHHHHHHHHHHHHHhCCCChh
Confidence            4456777899999999999999999988888888887665431       15899888877776654 334455677764

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=97.01  E-value=0.0054  Score=48.17  Aligned_cols=70  Identities=16%  Similarity=0.134  Sum_probs=52.8

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp   73 (156)
                      ..+....++.+..|++.|++..++......+|.++++.++..    .+||+.+++..+..++..+ ..++++|.+
T Consensus       123 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  197 (408)
T PRK09874        123 FVPNANALIATQVPRNKSGWALGTLSTGGVSGALLGPLAGGLLADSYGLRPVFFITASVLFLCFLVTLFCIRENF  197 (408)
T ss_pred             hHHhHHHHHHHhcCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHHhccCc
Confidence            345556688899999999999999888888888887766553    5899999988887665433 445567754

>TIGR00898 2A0119 cation transport protein

Probab=96.99  E-value=0.0018  Score=52.71  Aligned_cols=70  Identities=21%  Similarity=0.234  Sum_probs=54.7

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh--hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF--LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~--~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      .+++.+++.+|..|.+.|+...++.+....+|.++++.+...  .++..++.+.++.+++..+..+++||+.
T Consensus       427 ~~~~~~~~~~e~~p~~~r~~~~g~~~~~~~ig~~i~p~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~lpet~  498 (505)
T TIGR00898       427 AFQMVYLYTAELYPTVVRNLGVGVCSTMARVGSIISPFLVYLGEKWLFLPLVLFGGLALLAGILTLFLPETK  498 (505)
T ss_pred             HHHHHHHHhcccccHHHHhhhHhHHHHHHHHHHHHHhHHHHHHHHHHhhHHHHHHHHHHHHHHHHHcCcCCC
Confidence            356677889999999999999999998889999998877652  2456677777777666666667889874

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.97  E-value=0.0039  Score=49.25  Aligned_cols=66  Identities=15%  Similarity=0.177  Sum_probs=51.1

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPES   72 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpES   72 (156)
                      +..+.+..|..|. .||...++.+....+|..+++.++..    .+|+.++.+..++.++.++..+++||+
T Consensus       324 ~~~~~~~~~~~p~-~~g~~~~~~~~~~~lg~~~g~~l~G~i~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~  393 (393)
T PRK15011        324 GIGMLYFQDLMPG-QAGSATTLYTNTSRVGWIIAGSLAGIVAEIWNYHAVFWFALVMIIATLFCLLRIKDV  393 (393)
T ss_pred             HHHHHHHHHhCCC-CcchHHHHHHHHHHHHHHHHHHHHHHHHHHhhhHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            4455678899986 48888888777777888777766654    589999999988888887777777763

>PRK11652 emrD multidrug resistance protein D; Provisional

Probab=96.96  E-value=0.0043  Score=48.75  Aligned_cols=69  Identities=14%  Similarity=0.276  Sum_probs=51.6

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCChH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~   74 (156)
                      +....++.|..+.+.|+...+..+++..+|.++++.++..    .+||+.+.+..+.+++. ++..+++||++.
T Consensus       115 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (394)
T PRK11652        115 VMARTLPRDLYEGTQLRHANSLLNMGILVSPLLAPLIGGLLTTLFGWRACYLFLLLLGAGVTFSMARWMPETRP  188 (394)
T ss_pred             HHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChHHHHHHHHHHHHHHHHHHHHhCCccCc
Confidence            4455677888888999998888888888877777666543    58999999988776554 444567899764

>PF06609 TRI12: Fungal trichothecene efflux pump (TRI12); InterPro: IPR010573 This family consists of several fungal specific trichothecene efflux pump proteins

Probab=96.93  E-value=0.0034  Score=52.66  Aligned_cols=65  Identities=18%  Similarity=0.356  Sum_probs=40.9

Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHHH----HHHHHHHhhhhhhHHHHHHHHHHHHHHHHH--HHhhccCC
Q psy15865          8 VLTYVAEITQPHLRGMLSATASMTTIF----GTVSQLFLGSFLHWRSAAILNLLFPILALC--ALYFIPES   72 (156)
Q Consensus         8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~----G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~--~~~~lpES   72 (156)
                      ....++|..|.+.|+....+......+    |.+++..+....+|||.+++..+...+.++  ++|+-|.+
T Consensus       151 ~~~~isEl~p~k~R~~~~~~~~~~~i~~~~~~~~ia~~~~~~~~WRw~~~~~~i~~~i~~vl~~~fY~PP~  221 (599)
T PF06609_consen  151 AALAISELVPNKWRGLGLAIASIPFIITTWISPLIAQLFAAHSGWRWIFYIFIIWSGIALVLIFFFYFPPP  221 (599)
T ss_pred             HHHHHHHhcccchhhhHhHHHHHHHHhhhcccHHHHHHhccCCCcchHHHHHHHHHHHHHHHHHHHhCCCc
Confidence            445689999999998877665544433    333333333335899999999887555433  33444543

Many of the genes involved in trichothecene toxin biosynthesis in Fusarium sporotrichioides are present within a gene cluster. It has been suggested that TRI12 may play a role in F. sporotrichioides self-protection against trichothecenes [].

>PRK03699 putative transporter; Provisional

Probab=96.89  E-value=0.006  Score=48.17  Aligned_cols=63  Identities=6%  Similarity=-0.010  Sum_probs=46.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-----FLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..+....++.|+.|.+.|+...+.....+.+|..+++.+..     ..+||+.|.+.+++.++.++..
T Consensus       112 ~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~gw~~~f~~~~~~~~~~~~~~  179 (394)
T PRK03699        112 TMSIGTFLITHVYEGKQRGSRLLFTDSFFSMAGMIFPIIAAYLLARSIEWYWVYACIGLVYVAIFILT  179 (394)
T ss_pred             hccchhHHhhhhcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHH
Confidence            44566778899999999999888877777777666654432     3589999998888766654443

>PRK11043 putative transporter; Provisional

Probab=96.86  E-value=0.0061  Score=48.05  Aligned_cols=68  Identities=13%  Similarity=0.133  Sum_probs=47.6

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      +....++.|..+++.++...+.......+|..+++.++.    ..+||+.+++..++.++..+..++++|++
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  184 (401)
T PRK11043        113 VIWQALVIDRYPAQKANRVFATIMPLVALSPALAPLLGAWLLNHFGWQAIFATLFAITLLLILPTLRLKPSK  184 (401)
T ss_pred             HHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCChHHHHHHHHHHHHHHHHHHHHcCCCC
Confidence            344567889999988887777666656666656555543    35999999998888777665555666654

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=96.84  E-value=0.0036  Score=55.82  Aligned_cols=73  Identities=22%  Similarity=0.132  Sum_probs=52.3

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------------hHHHHHHHHHHH-HHHHHHHHhh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------HWRSAAILNLLF-PILALCALYF   68 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------------~Wr~~~~~~~~~-~~~~~~~~~~   68 (156)
                      ...++...++.|++|.+.|+++.++.+.+..+|.++++.++..+             .|++.+.+..+. .++.+++.++
T Consensus       119 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~ig~~lg~~l~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  198 (1146)
T PRK08633        119 IYSPAKYGIIPELVGKENLSRANGLLEAFTIVAILAGTALFSFLFESVNGNTPSEILGRIAPAGLVLLAVAVLGLIFAYR  198 (1146)
T ss_pred             hhchHHHhhhHHhcCcccchhhhhHHHHHHHHHHHHHHHHHHHHHHhhccccccccccchHHHHHHHHHHHHHHHHHHhc
Confidence            34567778999999999999999999999988888887776532             244444444333 4444555667


Q ss_pred             ccCChHH
Q psy15865         69 IPESPHW   75 (156)
Q Consensus        69 lpESp~~   75 (156)
                      +||+|.+
T Consensus       199 ~~~~~~~  205 (1146)
T PRK08633        199 LPKVPAA  205 (1146)
T ss_pred             CcCCCCC
Confidence            8998765

>TIGR00806 rfc RFC reduced folate carrier

Probab=96.74  E-value=0.011  Score=48.49  Aligned_cols=73  Identities=19%  Similarity=0.341  Sum_probs=54.6

Q ss_pred             hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHH---HHHHHHHHHhhccCChHHHHHh
Q psy15865          7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLL---FPILALCALYFIPESPHWLISK   79 (156)
Q Consensus         7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~---~~~~~~~~~~~lpESp~~l~~~   79 (156)
                      ....|+..+.|+++|+++.+++..+..+|.+++..++..   ++||..+.+..+   ...+.++.-+++|-.++-+.-+
T Consensus       134 A~~syI~~WfP~kER~ratsi~~sg~~vG~~Ia~~L~qll~s~gWr~y~~Ln~Isl~s~~~a~~~a~~LP~~~~sl~f~  212 (511)
T TIGR00806       134 AYSSYIFSLVPPSRYQRAAAYSRAAVLLGVFLSSVLGQLLVTLGWISYSTLNIISLVFMTFSVFLALFLKRPKRSLFFN  212 (511)
T ss_pred             HHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHhCCCCchhhhhc
Confidence            677899999999999999999999999999998877654   478776665543   3334455667888555544443

Proteins of the RFC family are so-far restricted to animals. RFC proteins possess 12 putative transmembrane a-helical spanners (TMSs) and evidence for a 12 TMS topology has been published for the human RFC. The RFC transporters appear to transport reduced folate by an energy-dependent, pH-dependent, Na+-independent mechanism. Folate:H+ symport, folate:OH- antiport and folate:anion antiport mechanisms have been proposed, but the energetic mechanism is not well defined.

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=96.71  E-value=0.0069  Score=49.69  Aligned_cols=56  Identities=11%  Similarity=-0.058  Sum_probs=40.7

Q ss_pred             CccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLL   57 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~   57 (156)
                      |...+....+++|..|++.  |+...+++.++..+|.++++.++.    ..+||+.|++..+
T Consensus       120 g~~~~~~~~li~~~~p~~~~~~~~~~~~~~~~~nig~~~g~~l~g~l~~~~gw~~~F~i~~i  181 (489)
T PRK10207        120 GLFKANPASLLSKCYPPKDPRLDGAFTLFYMSINIGSLISLSLAPVIADKFGYSVTYNLCGA  181 (489)
T ss_pred             ccccCCHHHHHHHhcCCCchhhhcchhHHHHHHHHHHHHHHHHHHHHHHhhChHHHHHHHHH
Confidence            3456778899999998874  466666677777777766665544    4699999998754

>PRK10054 putative transporter; Provisional

Probab=96.70  E-value=0.0055  Score=48.57  Aligned_cols=68  Identities=10%  Similarity=0.067  Sum_probs=51.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHH-HHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALC-ALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~-~~~~lpES   72 (156)
                      .++...++.|..|++.|++..++......+|..+++.++..   .+||..|.+.++..++.++ ..+++||.
T Consensus       114 ~~~~~~~~~~~~~~~~~~~~~g~~~~~~~lg~~igp~l~~~l~~~g~~~~f~~~~~~~~i~~i~~~~~~~~~  185 (395)
T PRK10054        114 STVLKAWFADNLSSTSKTKIFSLNYTMLNIGWTVGPPLGTLLVMQSINLPFWLAAICSAFPLVFIQIWVQRS  185 (395)
T ss_pred             HHHHHHHHHHhcCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccCcHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34567788999999999999888888888888887776654   4899999988877666533 34456655

>PRK05122 major facilitator superfamily transporter; Provisional

Probab=96.67  E-value=0.0093  Score=46.91  Aligned_cols=67  Identities=13%  Similarity=0.083  Sum_probs=48.4

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      .+.....+.|..|++.||+..++......+|..+++.+...    .+|+..+.+.++..++.++..+++++
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  390 (399)
T PRK05122        320 FPALGVEAVKRVPPQNRGAALGAYSVFLDLSLGITGPLAGLVASWFGYPSIFLAAALAALLGLALTWLLYR  390 (399)
T ss_pred             HHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            34445667899999999999999888888877665544332    48999999888877776555544433

>cd06174 MFS The Major Facilitator Superfamily (MFS) is a large and diverse group of secondary transporters that includes uniporters, symporters, and antiporters

Probab=96.67  E-value=0.0078  Score=45.64  Aligned_cols=68  Identities=18%  Similarity=0.235  Sum_probs=56.0

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      +...+....++.|..|+++|++..++.+....+|..+++.+...    .+|+..+.+.++..++..+..+++
T Consensus       280 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~i~~~i~g~l~~~~~~~~~~~~~~~~~~i~~i~~~~~  351 (352)
T cd06174         280 GFAFPALLTLASELAPPEARGTASGLFNTFGSLGGALGPLLAGLLLDTGGYGGVFLILAALALLAALLLLLL  351 (352)
T ss_pred             hccchhHHHHHHhhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccCcchHHHHHHHHHHHHHHHheec
Confidence            34567788899999999999999999999999999888877654    489999999998888776655443

MFS proteins facilitate the transport across cytoplasmic or internal membranes of a variety of substrates including ions, sugar phosphates, drugs, neurotransmitters, nucleosides, amino acids, and peptides. They do so using the electrochemical potential of the transported substrates. Uniporters transport a single substrate, while symporters and antiporters transport two substrates in the same or in opposite directions, respectively, across membranes. MFS proteins are typically 400 to 600 amino acids in length, and the majority contain 12 transmembrane alpha helices (TMs) connected by hydrophilic loops. The N- and C-terminal halves of these proteins display weak similarity and may be the result of a gene duplication/fusion event. Based on kinetic studies and the structures of a few bacterial superfamily members, GlpT (glycerol-3

>TIGR00885 fucP L-fucose:H+ symporter permease

Probab=96.67  E-value=0.0094  Score=47.67  Aligned_cols=68  Identities=7%  Similarity=0.011  Sum_probs=49.5

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------------------------------hhHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------------------------------LHWRSAAIL   54 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------------------------------~~Wr~~~~~   54 (156)
                      .+....++.+..|++.|++..++.+.+..+|..+++.++..                              .+||+++++
T Consensus       112 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~~g~~i~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~fl~  191 (410)
T TIGR00885       112 ETAANPYILVMGPESTATRRLNLAQSFNPFGSIIGMVVAQQLILSNLPHQSQDVLDKLSPEELSAIKHSDLASVQTPYMI  191 (410)
T ss_pred             HhhhhHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCCccchhhhhhhcCHHHHHHHHHHHHHHHHHHHHH
Confidence            34556788999999999999998888888888887766432                              259999988


Q ss_pred             HHHHHHHHHHHH--hhccCC
Q psy15865         55 NLLFPILALCAL--YFIPES   72 (156)
Q Consensus        55 ~~~~~~~~~~~~--~~lpES   72 (156)
                      .+++.++..+..  ..+||.
T Consensus       192 ~a~~~~~~~~~~~~~~~p~~  211 (410)
T TIGR00885       192 IGAVVLAVALLIMLTKMPAL  211 (410)
T ss_pred             HHHHHHHHHHHHHHhcCCCC
Confidence            887766544333  236663

This family describes the L-fucose permease in bacteria. L-fucose(6-deoxy-L-galactose) is a monosaccharide found in glycoproteins and cell wall polysaccharides. L-fucose is used in bacteria through an inducible pathway mediated by atleast four enzymes: a permease, isomerase, kinase and an aldolase which are encoded by fucP, fucI, fucK, fucA respectively. The fuc genes belong to a regulon comprising of four linked operons: fucO, fucA, fucPIK and fucR. The positive regulator is encoded by fucR, whose protein responds to fuculose-1-phosphate, which acts as an effector.

>PRK15011 sugar efflux transporter B; Provisional

Probab=96.60  E-value=0.0099  Score=46.94  Aligned_cols=68  Identities=13%  Similarity=0.030  Sum_probs=44.5

Q ss_pred             hhHHHHHHhhcCcchh--HHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHH-HHHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILAL-CALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~R--g~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~-~~~~~lpESp   73 (156)
                      +....++.++.+++.|  +...+..+.+..+|.++++.++.    ..+||..|++.++.+++.. +...++||+|
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~lg~~~g~~i~~~l~~~~gw~~~f~~~~~~~~~~~~~~~~~~~~~~  198 (393)
T PRK15011        124 PQMFALAREHADKTGREAVMFSSFLRAQVSLAWVIGPPLAYALAMGFSFTVMYLSAAVAFIVCGVMVWLFLPSMR  198 (393)
T ss_pred             HHHHHHHHHHhhhccchHHHHHHHHHHHHHHHHHHhhHHHHHHHHhcChHHHHHHHHHHHHHHHHHHHhhcCccC
Confidence            3445566776666555  34446666666677777666654    4599999999888766553 3455678875

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.59  E-value=0.008  Score=48.62  Aligned_cols=60  Identities=12%  Similarity=-0.002  Sum_probs=45.4

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      +....++.++.+ +.|++..++.+.+..+|..+++.++.    ..+||+.|++.++..++.++..
T Consensus       127 ~~~~~~~~~~~~-~~r~~a~g~~~~~~~~g~~~~~~l~~~l~~~~gwr~~f~~~~~~~~~~~v~~  190 (455)
T TIGR00892       127 QPSLTMLGKYFY-RRRPLANGLAMAGSPVFLSTLAPLNQYLFESFGWRGSFLILGGLLLHCCVCG  190 (455)
T ss_pred             hHHHHHHHHHHH-hhHHHHHHHHHhcccHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            445567788886 78999999999888888777765543    3589999999988776554433

>TIGR00892 2A0113 monocarboxylate transporter 1

Probab=96.55  E-value=0.0089  Score=48.37  Aligned_cols=62  Identities=5%  Similarity=-0.065  Sum_probs=50.1

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILALC   64 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~~~   64 (156)
                      +..+....++.|..|++++|...++.+....+|.++++.++..    . +|+..|.+.++..++..+
T Consensus       349 ~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~lg~~igp~i~G~l~~~~g~~~~~f~~~~~~~li~~~  415 (455)
T TIGR00892       349 SVGALLFEVLMDLVGAQRFSSAVGLVTIVECCAVLIGPPLAGRLVDATKNYKYIFYASGSIVVSAGL  415 (455)
T ss_pred             hHHHHHHHHHHHHhhHHHHhhHHhHHHHHHHHHHHccccceeeeehhcCCcchHHHHhhHHHHHHHH
Confidence            4456677888999999999999999999999999999877663    2 599999888877655443

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.53  E-value=0.0088  Score=45.94  Aligned_cols=67  Identities=16%  Similarity=0.116  Sum_probs=47.0

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHH-Hhhhh---hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQL-FLGSF---LHWRSAAILNLLFPILALCA-LYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~-~~~~~---~~Wr~~~~~~~~~~~~~~~~-~~~lpESp   73 (156)
                      +....++.|+.| ++|++..++...+..+|.+++. +....   .+||+.|++.++++++..+. .++++|.|
T Consensus       110 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~  181 (377)
T TIGR00890       110 GIALNTAVKWFP-DKRGLASGIIIGGYGLGSFILSPLITSVINLEGVPAAFIYMGIIFLLVIVLGAFLIGYPP  181 (377)
T ss_pred             HhHHHHHHHHcC-cccHHHHHHHHHhcchhHhHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHheecCc
Confidence            445567788887 5799999999998888876543 33322   47999999998887765444 44555544

>TIGR00879 SP MFS transporter, sugar porter (SP) family

Probab=96.51  E-value=0.0039  Score=49.37  Aligned_cols=68  Identities=21%  Similarity=0.148  Sum_probs=52.1

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp   73 (156)
                      ++..+++.|..|++.|+...++..+...+|.++++.+...    .+|++.|++.++.+++..+. .+++||+.
T Consensus       402 ~~~~~~~~~~~p~~~~~~~~~~~~~~~~lg~~i~~~~~~~~~~~~~~~~~f~~~~~~~~~~~i~~~~~~~~~~  474 (481)
T TIGR00879       402 PVPWVIVSEIFPLSLRPKGISIAVAANWLANFIVGFLFPTMLESIGVGGVFIFFGGLNVLGLIFVYFFLPETK  474 (481)
T ss_pred             CeehhhhhccCChHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcCccceehhHHHHHHHHHHHHheecccCC
Confidence            4555677999999999999999999999998888766543    37998888888776665444 45567754

This model represent the sugar porter subfamily of the major facilitator superfamily (pfam00083)

>TIGR00890 2A0111 Oxalate/Formate Antiporter

Probab=96.38  E-value=0.0095  Score=45.76  Aligned_cols=60  Identities=12%  Similarity=0.118  Sum_probs=48.4

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA   62 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~   62 (156)
                      +..+..+.++.|..|+++|++..++.+....+|..+++.+...    .+|+..+.+.++..++.
T Consensus       311 ~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~f~~~~~~~~~~  374 (377)
T TIGR00890       311 GTISLFPSLVSDIFGPANSAANYGFLYTAKAVAGIFGGLIASHALTEIGFEYTFIVTGAFALTS  374 (377)
T ss_pred             cchhccHHHHHHHhhhhhhhhHhHHHHHHHHHHHHHHHHHHHHHHhhhchhhHHHHHHHHHHHh
Confidence            3445667789999999999999999998888998888776553    58999988887776654

>TIGR00893 2A0114 d-galactonate transporter

Probab=96.35  E-value=0.02  Score=44.07  Aligned_cols=63  Identities=5%  Similarity=0.076  Sum_probs=50.4

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCAL   66 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..+....+++|..|++.||+..++.+....+|..+++.+...    .+ |+..+.+.++..++..+..
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~~~~i~g~l~~~~g~~~~~~~~~~~~~~~~~~~~  395 (399)
T TIGR00893       328 AGAIGWALISDNAPGNIAGLTGGLINSLGNLGGIVGPIVIGAIAATTGSFAGALMVVAALALIGALSY  395 (399)
T ss_pred             hhhHHHHHHHhhcChhHHHHHHHHHHHHHHHhhhhhhHHhhhhccCCCchhHHHHHHHHHHHHHHHHH
Confidence            466778899999999999999999998888888888776553    35 9988888887766654443

>TIGR00887 2A0109 phosphate:H+ symporter

Probab=96.33  E-value=0.014  Score=47.72  Aligned_cols=69  Identities=14%  Similarity=0.132  Sum_probs=48.6

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-h-------------hHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-L-------------HWRSAAILNLLFPILALCALYFIP   70 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-~-------------~Wr~~~~~~~~~~~~~~~~~~~lp   70 (156)
                      .++...+.+|..|.+.|++..++.+....+|.++++.+... .             ++...+++.++.+++..+..+++|
T Consensus       410 ~~~~~~~~~E~~p~~~R~~~~g~~~~~~~~~~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~lp  489 (502)
T TIGR00887       410 NATTFIVPGEVFPTRYRSTAHGISAASGKAGAIIGQFGFLYLAQHGDPTKGYPTGIWMGHVLEIFALFMFLGILFTLLIP  489 (502)
T ss_pred             CchhhhhhhccCchhHHHHHHHHHHHHhhhHHHHHHHHhhhhhccccccccccccccchHHHHHHHHHHHHHHHHheEec
Confidence            34566788999999999999999888877888777655432 1             234455666666555555557789


Q ss_pred             CCh
Q psy15865         71 ESP   73 (156)
Q Consensus        71 ESp   73 (156)
                      |+.
T Consensus       490 Et~  492 (502)
T TIGR00887       490 ETK  492 (502)
T ss_pred             cCC
Confidence            974

This model represents the phosphate uptake symporter subfamily of the major facilitator superfamily (pfam00083).

>PRK11551 putative 3-hydroxyphenylpropionic transporter MhpT; Provisional

Probab=96.29  E-value=0.013  Score=46.12  Aligned_cols=69  Identities=12%  Similarity=0.083  Sum_probs=50.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----hHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----HWRSAAILNLLFPILALCALYFIPES   72 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----~Wr~~~~~~~~~~~~~~~~~~~lpES   72 (156)
                      ..+..+.++.|..|++.||+..++.+....+|..+++.+....     +|...+.......++..+..+++.+.
T Consensus       325 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  398 (406)
T PRK11551        325 GQSVLYALAPLFYPTQVRGTGVGAAVAVGRLGSMAGPLLAGQLLALGRSTVGVIGASIPVILVAALAALLLVSR  398 (406)
T ss_pred             HHHHHHHHHHHHcchhhhhhhhhHHHHhhhHHHHHHhhhHhhhhccCCchHHHHHHHHHHHHHHHHHHHHHhcc
Confidence            3456677889999999999999999888889988888776542     56666666666655555554444333

>PRK12382 putative transporter; Provisional

Probab=96.24  E-value=0.025  Score=44.41  Aligned_cols=62  Identities=10%  Similarity=0.029  Sum_probs=48.4

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      .+.....+.|..|+++||+..++.+....+|..+++.+...    .+|+..+.+.++..++..+..
T Consensus       320 ~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~ig~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~  385 (392)
T PRK12382        320 FPALGVEVVKRVPSQVRGTALGGYAAFQDIAYGVSGPLAGMLATSFGYPSVFLAGAISAVLGIIVT  385 (392)
T ss_pred             HHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCchHHHHHHHHHHHHHHHHH
Confidence            45556678899999999999999988888888887766553    489999999888776654443

>TIGR01272 gluP glucose/galactose transporter

Probab=96.11  E-value=0.033  Score=42.87  Aligned_cols=69  Identities=14%  Similarity=0.041  Sum_probs=51.1

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh--------------------hhHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF--------------------LHWRSAAILNLLFPILAL   63 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~--------------------~~Wr~~~~~~~~~~~~~~   63 (156)
                      .-+.+..|++++.+++.+.+..++.+.++.+|.+++++++..                    ..|++++++.+...++..
T Consensus        27 lq~~~n~~v~~~~~~~~~~~~l~~~~~~~~~G~~~gP~i~~~~i~~~~~~~~~~~~~~~~~~~~~~~~yl~ia~~~~~~~  106 (310)
T TIGR01272        27 LQVAANPYVSILGPIETAASRLALTQAFNKLGTTVAPLFGGSLILSGAGDLSMQVATANAEAAKVHTPYLLLAGALAVLA  106 (310)
T ss_pred             HHhhHHHHHHHHCCcchHHHHHHHHHHHhhhHHHHHHHHHHHHHhcCCcchhhhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            346677899999999999999999999999999999888652                    369999886655544333


Q ss_pred             HHH--hhccCC
Q psy15865         64 CAL--YFIPES   72 (156)
Q Consensus        64 ~~~--~~lpES   72 (156)
                      +.+  .-+||.
T Consensus       107 i~~~~~~~p~~  117 (310)
T TIGR01272       107 IIFAFLPLPEL  117 (310)
T ss_pred             HHHHHccCCCC
Confidence            333  335664

Disruption of the loci leads to the total loss of glucose or galactose uptake in E.coli. Putative transporters in other bacterial species were isolated by functional complementation, which restored it functional activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=96.02  E-value=0.035  Score=45.65  Aligned_cols=59  Identities=8%  Similarity=0.026  Sum_probs=41.5

Q ss_pred             ccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL   61 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~   61 (156)
                      ...+....++.|+.|++.  |+...+++.++..+|.++++.++.+    .+||+.|++..+..++
T Consensus       128 ~~~~~~~~l~~~~f~~~~~~~~~~~~~~~~~~~iG~~~gp~i~g~l~~~~g~~~~F~i~~i~~~i  192 (500)
T PRK09584        128 LFKANPSSLLSTCYEKDDPRLDGAFTMYYMSINIGSFFSMLATPWLAAKYGWSVAFALSVVGMLI  192 (500)
T ss_pred             cccCCHHHHHHHhcCCCchhhhhcchHHHHHHHHHHHHHHHHHHHHHHhhCHHHHHHHHHHHHHH
Confidence            345666788999998653  3345566677777888777766553    5899999998765444

>PRK10133 L-fucose transporter; Provisional

Probab=95.94  E-value=0.045  Score=44.16  Aligned_cols=41  Identities=12%  Similarity=0.123  Sum_probs=30.4

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG   43 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~   43 (156)
                      ...+....++.|+.+.+.|+...++.+.++.+|.+++++++
T Consensus       133 ~~~~~~~~~v~~~~~~~~~~~~~s~~~~~~~~G~~~g~~~g  173 (438)
T PRK10133        133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFG  173 (438)
T ss_pred             HHHhhHHHHHHHhCChhhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34456677888887777777677888888888888877653

>TIGR00899 2A0120 sugar efflux transporter

Probab=95.93  E-value=0.036  Score=42.86  Aligned_cols=66  Identities=15%  Similarity=0.222  Sum_probs=48.4

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      .+....++.|..|. +++...++......+|..+++.++..    .+|+..+.+.++..++..+...+++|
T Consensus       306 ~~~~~~~~~~~~~~-~~~~~~~~~~~~~~~g~~~g~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~  375 (375)
T TIGR00899       306 AGIGMLYFQDLMPG-RAGAATTLYTNTGRVGWIIAGSVGGILAERWSYHAVYWFAIVMLIVALFCLLLIKD  375 (375)
T ss_pred             HHHHHHHHHHhCcc-hhhHHHHHHHHHHHHHHHHHHHHHHHHHHhccchhHHHHHHHHHHHHHHHHheecC
Confidence            45566788899886 45688888777777788777766543    48999999988887777666665554

This family of proteins is an efflux system for lactose, glucose, aromatic glucosides and galactosides, cellobiose, maltose, a-methyl glucoside and other sugar compounds. They are found in both gram-negative and gram-postitive bacteria.

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=95.92  E-value=0.029  Score=45.82  Aligned_cols=65  Identities=11%  Similarity=-0.002  Sum_probs=47.1

Q ss_pred             CccchhHHHHHHhhcCcch---hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHL---RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~---Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      |...+....+++|..|.+.   |+...++......+|.++++.++..    .+||+.|.+.++..++.++.+
T Consensus       117 g~~~~~~~~~~a~~~~~~~~~~r~~~~~~~~~~~niG~~ig~~l~g~l~~~~g~~~~f~~~~~~~~~~~l~~  188 (475)
T TIGR00924       117 GLFKANPSSMVGKLYERGDMPRRDGGFTLFYMSINIGSFISPLLAGVIAENYGYHVGFNLAAVGMVIGLLTF  188 (475)
T ss_pred             ccccCCHHHHHHHhcCCCCcccccceehhHHHHHHHHHHHHHHHHHHHHHhcChHHHHHHHHHHHHHHHHHH
Confidence            3455777889999998754   7777788788888888887777553    489999998876544443333

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>PRK09952 shikimate transporter; Provisional

Probab=95.91  E-value=0.037  Score=44.49  Aligned_cols=69  Identities=13%  Similarity=0.176  Sum_probs=47.5

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHH-HHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATA-SMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      .+....++.|..|.+.|+...++. .++..+|..+++.+...      .+|+.++....+.+++.++..+.++|+.
T Consensus       361 ~~~~~~~~~e~~p~~~r~tg~g~~~~~~~~lgg~~~p~i~g~l~~~~~~~~~~~~~~~~~~~~i~~v~~~~~~~~~  436 (438)
T PRK09952        361 VCVQQPMFTEMFGASYRYSGAGVGYQVASVVGGGFTPFIAAALVTYFGGSWHSVAIYLLAGCLISAMTALLMKDNQ  436 (438)
T ss_pred             HHHHHHHHHHHCCcchhHHHHhHHHHHHHHHHHHHHHHHHHHHHHhcCCCchHHHHHHHHHHHHHHHHHHHccccc
Confidence            445677889999999998777763 44444565555555433      1488888888888777766666677643

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=95.87  E-value=0.063  Score=42.21  Aligned_cols=61  Identities=15%  Similarity=0.081  Sum_probs=44.1

Q ss_pred             HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865         11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----SFLHWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus        11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~~~~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      +..|..+.+.++...+....+..+|.+++....    ...+||..|++.++..++..+..++++|
T Consensus       121 ~~~~~~~~~~~~~~~~~~~~g~~lG~~~g~~~~~~l~~~~gw~~~f~~~a~l~~~~~~~~~~~~~  185 (390)
T TIGR02718       121 MAAEHFNGRTLAKGNAVQIAGVMIGFFGGGAGTLVLFGKFGQRPAFLLVACVPLASLVCVLWLKD  185 (390)
T ss_pred             HHHHhCCHhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHHHHHHHHHHcCC
Confidence            456777778888877777777788888877543    3469999999999887765555444443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=95.75  E-value=0.043  Score=43.41  Aligned_cols=60  Identities=12%  Similarity=0.045  Sum_probs=41.8

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILALC   64 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~~~   64 (156)
                      ..+..+.++.++.| ++|++..++...+..+|..++..++..     .+||..+.+..++.++.++
T Consensus       114 ~~~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~g~~~~~~l~~~~~~w~~~~~~~~~~~~~~~~  178 (393)
T PRK09705        114 IQAVMPSVIKRRFQ-QRTPLVMGLWSAALMGGGGLGAAITPWLVQHSETWYQTLAWWALPAVVALF  178 (393)
T ss_pred             HhhhhhHHHHHHcc-ccchhHHHHHHHHHHHHHHHHHHHHHHHHHhcCCHHHHHHHHHHHHHHHHH
Confidence            34566778889887 789999999887776776666655442     3899987766665554433

>PRK09528 lacY galactoside permease; Reviewed

Probab=95.75  E-value=0.019  Score=45.66  Aligned_cols=67  Identities=12%  Similarity=0.128  Sum_probs=43.5

Q ss_pred             hHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          7 LVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         7 ~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      ....|+.|..|.+.|+...+. +++...+|..+++.+...    .+||..|.+.++..++. ++.++++++.|
T Consensus       335 ~~~~~~~~~~~~~~~a~~~~~~~~~~~~lg~~ig~~~~G~l~~~~G~~~~f~~~~~~~~i~~~~~~~~~~~~~  407 (420)
T PRK09528        335 GVFKYITLNFDVRLSATIYLVGFQFAKQLGAVFLSTLAGNLYDSIGFQGTYLILGGIVLLFTLISVFTLSGDR  407 (420)
T ss_pred             HHHHHHHHHcCccceeeeeeehHHHHHHHHHHHHHHHHHHHHHhhCchHHHHHHHHHHHHHHHHHHHHhcCCc
Confidence            344677899999988876443 455566677666655543    48999999877775554 34444444444

>PRK03633 putative MFS family transporter protein; Provisional

Probab=95.61  E-value=0.065  Score=42.05  Aligned_cols=65  Identities=9%  Similarity=0.042  Sum_probs=47.0

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYF   68 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~   68 (156)
                      ..+....++.|..|++.++...+.....+.+|.++++.++..    .+|++.|.+.+...++..+..++
T Consensus       302 ~~p~~~~~~~~~~~~~~~~~~~~~~~~~~~lG~~igp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~  370 (381)
T PRK03633        302 LYPVAMAWACEKVEHHELVAMNQALLLSYTVGSLLGPSFTAMLMQNYSDNLLFIMIASVSFIYLLMLLR  370 (381)
T ss_pred             HHHHHHHHHHccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCccHHHHHHHHHHHHHHHHHHh
Confidence            356667778899988887777777667778888888777654    47888888877777665544433

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=95.39  E-value=0.071  Score=43.80  Aligned_cols=67  Identities=19%  Similarity=0.315  Sum_probs=49.2

Q ss_pred             hHHHHHHhhcCcchh--HHHHHHHHHHHHHHHHHHHHhhhhh-------------------hHHHHHHHHHHHHHHH-HH
Q psy15865          7 LVLTYVAEITQPHLR--GMLSATASMTTIFGTVSQLFLGSFL-------------------HWRSAAILNLLFPILA-LC   64 (156)
Q Consensus         7 ~~~~~i~E~~~~~~R--g~~~~~~~~~~~~G~~l~~~~~~~~-------------------~Wr~~~~~~~~~~~~~-~~   64 (156)
                      ...++++|.+|+++|  +...++.+.+..+|.++++.++...                   +-|..|.+.++..++. ++
T Consensus       134 p~rALiaDl~p~~~~~~~~a~~~~~~~~~lG~ilg~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~F~i~a~~l~i~~l~  213 (477)
T TIGR01301       134 PCRAFLADLTGGDARRTRIANAYFSFFMAIGNVLGYAAGAYSGLYKIFPFTKTEACGVSCANLKSCFLIDIILLAILTYI  213 (477)
T ss_pred             HHHHhcccccCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHhHHHhcccccccccccccchHHHHHHHHHHHHHHHHHH
Confidence            345688999999865  5677888888888998888876542                   4577888887765554 45


Q ss_pred             HHhhccCCh
Q psy15865         65 ALYFIPESP   73 (156)
Q Consensus        65 ~~~~lpESp   73 (156)
                      ..++++|.|
T Consensus       214 t~~~v~E~~  222 (477)
T TIGR01301       214 ALSAVKENP  222 (477)
T ss_pred             HeeeeeccC
Confidence            556789976

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>PRK15462 dipeptide/tripeptide permease D; Provisional

Probab=95.39  E-value=0.061  Score=44.34  Aligned_cols=59  Identities=14%  Similarity=0.037  Sum_probs=43.6

Q ss_pred             ccchhHHHHHHhhcCcc--hhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL   61 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~   61 (156)
                      ...+....+++|..|++  .|....++......+|.++++.+..+    .+||+.|.++++..++
T Consensus       116 ~~~~~~~alv~elfp~~~~~R~sgf~i~Y~~~nlG~~iap~l~g~L~~~~Gw~~~F~iaaigm~l  180 (493)
T PRK15462        116 LFKSNVSCLLGELYEPTDPRRDGGFSLMYAAGNVGSIIAPIACGYAQEEYSWAMGFGLAAVGMIA  180 (493)
T ss_pred             cccccHHHHHHHHCCCCCccccceehHHHHHHHHHHHHHHHHHHHHHhhhChHHHHHHHHHHHHH
Confidence            34466678999999875  68777777777777788887777654    4899999987654333

>PRK09874 drug efflux system protein MdtG; Provisional

Probab=95.31  E-value=0.031  Score=43.86  Aligned_cols=63  Identities=13%  Similarity=0.121  Sum_probs=48.2

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..+....++.+..|++.||+..++......+|..+++.++..    .+|+..|.+.++..++..+..
T Consensus       328 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~~gp~~~G~l~~~~g~~~~f~~~~~~~l~~~~~~  394 (408)
T PRK09874        328 LLPAVQTLLVYNSSNQIAGRIFSYNQSFRDIGNVTGPLMGAAISANYGFRAVFLVTAGVVLFNAVYS  394 (408)
T ss_pred             hHHHHHHHHHHhCCcccceeeehHHHHHHHHHHHhhHHHHHHHHhhcchhHHHHHHHHHHHHHHHHH
Confidence            345556677888999999998888877777888777777653    489999999988877765543

>TIGR00896 CynX cyanate transporter

Probab=95.31  E-value=0.068  Score=41.37  Aligned_cols=55  Identities=20%  Similarity=0.185  Sum_probs=39.3

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------LHWRSAAILNLLFPIL   61 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~   61 (156)
                      +..+.++.|..+ ++|++..++.+....+|..+++.++..      .+||+.|.+..+..++
T Consensus       106 ~~~~~~~~~~~~-~~~~~~~~~~~~~~~~g~~i~~~~~~~l~~~~~~~w~~~f~~~~~~~~~  166 (355)
T TIGR00896       106 VLLPSLIKRDFP-QRVGLMTGLYSMALMGGAALAAAATVPLAQHSGGHWQQALAWWALPALL  166 (355)
T ss_pred             ccchHHHHHhCc-chhhHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhHHHHHHHHHHHHHH
Confidence            345567788886 689999999888888888777655432      1399988776655443

This family of proteins is involved in active transport of cyanate. The cyanate transporter in E.Coli is used to transport cyanate into the cell so it can be metabolized into ammonia and bicarbonate. This process is used to overcome the toxicity of environmental cyanate.

>COG2223 NarK Nitrate/nitrite transporter [Inorganic ion transport and metabolism]

Probab=95.29  E-value=0.059  Score=43.23  Aligned_cols=74  Identities=14%  Similarity=0.191  Sum_probs=55.9

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HHHhhhhhh---HHHHHHHHHHHHHH-HHHHHhhccCC
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS----QLFLGSFLH---WRSAAILNLLFPIL-ALCALYFIPES   72 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l----~~~~~~~~~---Wr~~~~~~~~~~~~-~~~~~~~lpES   72 (156)
                      .|+++++...+++.+.|++.+|.+.++.. .-.+|..+    ++.+....+   ||....+-.++.++ ..+.++.+-+.
T Consensus       118 ~GasFav~m~~~s~~fP~~~qG~AlGI~g-~GN~G~av~q~~~P~v~~~~g~~~w~~~~~i~~~~l~v~~v~~~~~~~d~  196 (417)
T COG2223         118 AGASFAVGMPNASFFFPKEKQGLALGIAG-AGNLGVAVAQLVAPLVAVAFGFLAWRNVAGIYVVALAIAAVLAWLGMNDV  196 (417)
T ss_pred             ccceehcccccccccCChhhhhHHHHHhc-cccccHHHHHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHHHHHhCCC
Confidence            37899999999999999999999999987 55566555    444444456   99888877777555 45566677777


Q ss_pred             hHH
Q psy15865         73 PHW   75 (156)
Q Consensus        73 p~~   75 (156)
                      |..
T Consensus       197 p~~  199 (417)
T COG2223         197 PEH  199 (417)
T ss_pred             hhh
Confidence            765

>PRK15034 nitrate/nitrite transport protein NarU; Provisional

Probab=95.27  E-value=0.15  Score=41.83  Aligned_cols=72  Identities=10%  Similarity=-0.020  Sum_probs=45.9

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHH----HHHhhh------------------hhhHHHHHHHHHHHH
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVS----QLFLGS------------------FLHWRSAAILNLLFP   59 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l----~~~~~~------------------~~~Wr~~~~~~~~~~   59 (156)
                      |+.++.....+++++|+++||++.++......+|..+    .+.+..                  ..+||...++-.++.
T Consensus       142 g~~f~~~~~~vs~wfp~~~rG~A~Gi~~g~G~~G~~l~~~l~p~~i~~~l~~~~G~~~~~~~~g~~~~~~~~~~~~~~~~  221 (462)
T PRK15034        142 GANFASSMGNISFFFPKAKQGSALGINGGLGNLGVSVMQLVAPLVIFVPVFAFLGVNGVPQADGSVMSLANAAWIWVPLL  221 (462)
T ss_pred             HHhHHHHHHHHHHHCCHhHhHHHHHHHHHHHhhHHHHHHHHHHHHHHHHHHHHhccccccccccchHHHHHHHHHHHHHH
Confidence            3456778888999999999999999985444455543    332211                  124777777766666


Q ss_pred             HHHHH-HHhhccCCh
Q psy15865         60 ILALC-ALYFIPESP   73 (156)
Q Consensus        60 ~~~~~-~~~~lpESp   73 (156)
                      ++..+ .++++++-|
T Consensus       222 iv~~i~~~~~~~~~~  236 (462)
T PRK15034        222 AIATIAAWSGMNDIA  236 (462)
T ss_pred             HHHHHHHHHhCCCcc
Confidence            55543 344455544

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=95.05  E-value=0.077  Score=42.11  Aligned_cols=64  Identities=20%  Similarity=0.252  Sum_probs=45.4

Q ss_pred             HHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhhh-----------hhhHHHHHHHHHHHHHHHH-HHHhhccCCh
Q psy15865         10 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGS-----------FLHWRSAAILNLLFPILAL-CALYFIPESP   73 (156)
Q Consensus        10 ~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-----------~~~Wr~~~~~~~~~~~~~~-~~~~~lpESp   73 (156)
                      ++..|.+ +.++|++..++.+.+..+|.+++..+..           ..+||+++.+.++.+++.. +..++++|.+
T Consensus       122 al~~~~~~~~~~R~~~~~~~~~~~~~g~~l~~~~~~~l~~~~~~~~~~~g~~~~~~i~~~l~~~~~~~~~~~~~e~~  198 (437)
T TIGR00792       122 SLVPAITLDPRERESLSTFRRFGATLGGLLVAVIVLPLVSYFGGGDDKFGWFMFALVLALIGVVSLIICFFGTKERY  198 (437)
T ss_pred             hCcccccCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCcccccHHHHHHHHHHHHHHHHHHHHcCCEecC
Confidence            4556777 4688999999888888887766544321           2479999998888876654 4456678875

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>PRK11273 glpT sn-glycerol-3-phosphate transporter; Provisional

Probab=95.00  E-value=0.13  Score=41.46  Aligned_cols=59  Identities=15%  Similarity=0.182  Sum_probs=41.5

Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHHHHHH-HHHHhhh----hhhHHHHHHHHHHHHHHHHHHHh
Q psy15865          9 LTYVAEITQPHLRGMLSATASMTTIFGTV-SQLFLGS----FLHWRSAAILNLLFPILALCALY   67 (156)
Q Consensus         9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~-l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~~   67 (156)
                      .++..|..|++.||+..++.+....+|.. +++.+..    ..+|+..|++....+++..+...
T Consensus       369 ~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~~g~~v~g~l~~~~g~~~~f~~~~~~~~~~~~~~~  432 (452)
T PRK11273        369 GLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLI  432 (452)
T ss_pred             HHHHHHHcChhhhhhHHHHHHHHHHHHHHHhhhhhHHHHHHHhcchHHHHHHHHHHHHHHHHHH
Confidence            34678999999999999998766656543 3444433    35899999888877776655443

>PRK11128 putative 3-phenylpropionic acid transporter; Provisional

Probab=94.95  E-value=0.12  Score=40.50  Aligned_cols=66  Identities=11%  Similarity=-0.057  Sum_probs=36.3

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh----hhhhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG----SFLHWRSAAILNLLFPILALCALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~----~~~~Wr~~~~~~~~~~~~~~~~~~~lpES   72 (156)
                      .+....++.++.  +.|++..+...++..+|..+++.++    ...+||..|++.++..++..+..++.||.
T Consensus       112 ~~~~~a~~~~~~--~~~~~a~~~~~~~~~lg~~igp~lgg~l~~~~g~~~~f~~~~~~~~~~~~~~~~~~~~  181 (382)
T PRK11128        112 VPLTDALANTWQ--KQIGLDYGKVRLWGSIAFVIGSALTGKLVSWFGEQAILWILTAGVASMLLGQLLRPTI  181 (382)
T ss_pred             ccHHHHHHHHHH--hhccCCcchHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHHHHHHHHHccCCC
Confidence            334444555553  3345444444444445555555444    44699999988776554444444455664

>PRK10489 enterobactin exporter EntS; Provisional

Probab=94.88  E-value=0.11  Score=41.13  Aligned_cols=68  Identities=13%  Similarity=0.050  Sum_probs=46.3

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHH-HHHHHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPIL-ALCALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~-~~~~~~~lpESp   73 (156)
                      +....++.|..|++.||+..++......+|..+++.+...    .+++..+.+.+...++ ..+....+||..
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  403 (417)
T PRK10489        331 LLQYTLLQTQTPDEMLGRINGLWTAQNVTGDAIGAALLGGLGAMMTPVASASASGFGLLIIGVLLLLVLGELR  403 (417)
T ss_pred             HHHHHHHHhhCCHHHHHHHHHHHHHHHhhhHhHHHHHHHHHHHHhchhhHHHHHHHHHHHHHHHHHHhccccc
Confidence            3445688999999999999999887777777777766553    4666666655554333 344445556643

>TIGR00924 yjdL_sub1_fam amino acid/peptide transporter (Peptide:H+ symporter), bacterial

Probab=94.85  E-value=0.16  Score=41.41  Aligned_cols=59  Identities=17%  Similarity=0.139  Sum_probs=45.4

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA   62 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~   62 (156)
                      ..++...++++.+|++.||++.+++.+...+|..++..+...    .+|...+...++..++.
T Consensus       398 ~~p~~~~~~~~~aP~~~~g~~~g~~~l~~~~g~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~  460 (475)
T TIGR00924       398 ISPLGLSWWTKIAPQRLMGQMLGMWFLAQAMGSLLGGYLATFGAVPQGVTGVFGKIGLVTLLV  460 (475)
T ss_pred             HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccchhhHHHHHHHHHHHH
Confidence            356778889999999999999999999999999998766543    25666666666554443

The model describes proton-dependent oligopeptide transporters in bacteria. This model is restricted in its range in recognizing bacterial proton-dependent oligopeptide transporters, although they are found in yeast, plants and animals. They function by proton symport in a 1:1 stoichiometry, which is variable in different species. All of them are predicted to contain 12 transmembrane domains, for which limited experimental evidence exists.

>TIGR00897 2A0118 polyol permease family

Probab=94.48  E-value=0.31  Score=38.57  Aligned_cols=38  Identities=13%  Similarity=-0.034  Sum_probs=29.9

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHH-HHHHHhh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGT-VSQLFLG   43 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~-~l~~~~~   43 (156)
                      +....++.+..|+++|++..++.+....+|. ++++.++
T Consensus       124 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~g~~~~  162 (402)
T TIGR00897       124 YSFLVWVVYNTKQDNLSSAVGWFWAVYSIGIGVFGSYYS  162 (402)
T ss_pred             hHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3445677899999999999999998888886 4666554

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>PRK11010 ampG muropeptide transporter; Validated

Probab=94.33  E-value=0.17  Score=41.49  Aligned_cols=68  Identities=10%  Similarity=0.126  Sum_probs=50.8

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpES   72 (156)
                      .+...++..+.++.+.++...++.+....+|.+++..+.+.    .+|+..|.+..+.+++.++...+++++
T Consensus       334 ~~~~~a~~~~l~~~~~~~t~~gl~~s~~~lg~~~~~~~~G~l~~~~G~~~~f~~~~~~~l~~l~~~~~~~~~  405 (491)
T PRK11010        334 TAAFVALLMTLCNKSFSATQFALLSALSAVGRVYVGPVAGWFVEAHGWPTFYLFSVAAAVPGLLLLLVCRQT  405 (491)
T ss_pred             HHHHHHHHHHHcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            44566778899999999998888888888887655444332    489999999988888876666555543

>PRK03893 putative sialic acid transporter; Provisional

Probab=94.28  E-value=0.16  Score=41.16  Aligned_cols=54  Identities=13%  Similarity=0.022  Sum_probs=40.8

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLF   58 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~   58 (156)
                      .+..+.+++|..|++.||+..++......+|..+++.++..    .+|+..+.+.+..
T Consensus       384 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~lgp~l~g~l~~~~g~~~~~~~~~~~  441 (496)
T PRK03893        384 SGLLPKLIGGYFDTEQRAAGLGFTYNVGALGGALAPILGALIAQRLDLGTALASLSFS  441 (496)
T ss_pred             chhhHHHHHhhCCHHHhhcccchhhhhhhHHHHHHHHHHHHHhccCChHHHHHHHHHH
Confidence            35567788999999999999998877778888887776553    4788776554433

>KOG0252|consensus

Probab=94.07  E-value=0.034  Score=45.42  Aligned_cols=70  Identities=19%  Similarity=0.193  Sum_probs=55.9

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh---------hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF---------LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~---------~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      ..++..++-+|.+|.+.|+...++.....-+|.+++.....+         .+-|..+++.....++..+..+++|||-
T Consensus       423 Pn~ttfivpaE~FParvR~t~hGIsAA~GK~GAivg~~~F~~~t~~~yp~~~g~~~v~~i~~~~~~~gi~~T~l~pEtk  501 (538)
T KOG0252|consen  423 PNATTFIVPAEIFPARVRSTCHGISAASGKAGAIVGAFGFLYLTDHNYPPNIGVRNVFIILAGCMLLGILFTLLIPETK  501 (538)
T ss_pred             CCceeEEeehhhchHHHhhhhhhHHHHhccchHHHHHHHhhHhhhccCCccccchHHHHHHHHHHHHhHheeEEeeccc
Confidence            344556677999999999999999888888888887655432         3678888888888888888888999973

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=94.01  E-value=0.15  Score=40.03  Aligned_cols=54  Identities=4%  Similarity=-0.162  Sum_probs=33.9

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPI   60 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~   60 (156)
                      .+....+..+.  .++|++..+....+.++|.++++.++.    ..+||..|.+..+..+
T Consensus       112 ~p~~~al~~~~--~~~~~~~~g~~~~~~slG~~~g~~l~g~l~~~~g~~~~f~~~~~~~~  169 (382)
T TIGR00902       112 MPIGDALANTW--QKQFGLDYGKVRLIGSAAFIIGSALFGGLIGMFDEQNILAILTAGLA  169 (382)
T ss_pred             hhHHHHHHHHH--HHHcCCCccHHHHHHHHHHHHHHHHHHHHHHHcChhHHHHHHHHHHH
Confidence            34445555554  355666666666666666666665544    3699999888765533

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>KOG2816|consensus

Probab=93.91  E-value=0.18  Score=41.30  Aligned_cols=71  Identities=30%  Similarity=0.281  Sum_probs=54.8

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      +.+..+..|+++++..+.|....++....+..|..+++.++..    .+.-.+|.++.+..++. ...++++|||-
T Consensus       128 ~~~s~~~a~vadis~~~~R~~~~gll~~~~~~~~~~~p~~~~~~~~~~~~a~~f~ia~~~~~~~~~y~~~~l~Esl  203 (463)
T KOG2816|consen  128 AIFSVGFAYVADISSEEERSSSIGLLSGTFGAGLVIGPALGGYLVKFLGIALVFLIAAASGILSLLYMLLFLPESL  203 (463)
T ss_pred             hhhhhhhhheeeccchhHHHHHHHHHHHHHHHHHhHHHHHHHHHHHhcCchHHHHHHHHHHHHHHHHHhhcccccc
Confidence            4566788899999999999999999888777777777777654    46777788887776665 44567899984

>KOG0569|consensus

Probab=93.89  E-value=0.41  Score=39.50  Aligned_cols=69  Identities=14%  Similarity=0.093  Sum_probs=44.0

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPES   72 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpES   72 (156)
                      |.-|+.+.+.+|.+|...|..+.++......+..++......    .+|= +.|++-.+++++. ...++++|||
T Consensus       384 G~gpi~~fi~aELf~~~~R~aa~s~~~~~~w~~~fiv~~~fp~l~~~~g~-~~filF~i~~~~~~i~~~~~lPET  457 (485)
T KOG0569|consen  384 GPGPIPWFIGAELFPQSARSAAQSVATAVNWLSNFIVGFAFPPLQNVIGP-YVFILFVIPLAIFLIYLYRYLPET  457 (485)
T ss_pred             CCCchhHHHHHHhCCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcc-hhhHHHHHHHHHHHHHHHHhCccc
Confidence            345677889999999999998887755444443333222211    1233 5666667776655 4456679998

>PRK09705 cynX putative cyanate transporter; Provisional

Probab=93.82  E-value=0.44  Score=37.67  Aligned_cols=71  Identities=14%  Similarity=0.122  Sum_probs=47.2

Q ss_pred             ccchhHHHHHHhhcC-cchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          3 APLVLVLTYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      +..+.......+..+ ++.||+..++.+....++..+++.+..+    . +|...+.+..+.+++. .+...+.||++
T Consensus       308 ~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~~~~~~~gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~  385 (393)
T PRK09705        308 GAFPLCLLLALDHSVQPAIAGKLVAFMQGIGFIIAGLAPWFSGVLRSISGNYLMDWAFHALCVVGLMIITLRFAPARF  385 (393)
T ss_pred             chHHHHHHHHHhhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchHHHHHHHHHHHHHHHHHHHhccccc
Confidence            444555556667764 5788998888777777776666655543    2 4788888877776654 34456678875

>PF03825 Nuc_H_symport: Nucleoside H+ symporter

Probab=93.80  E-value=0.38  Score=38.61  Aligned_cols=62  Identities=16%  Similarity=0.354  Sum_probs=45.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILALCA   65 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~~~~   65 (156)
                      ..+.+..|+.+.+|++.|++..+++. +..++|..++..++++          ..|...+.+.++..++..+.
T Consensus       318 ~~~a~~~yi~~~~p~~~~at~Q~l~~~~~~Glg~~iG~~igG~l~~~~g~~~~~~~~~~~~v~a~~~~~~~~~  390 (400)
T PF03825_consen  318 FHAASVRYIDRIAPPELRATAQGLYSALSFGLGGAIGSLIGGWLYDAFGARGMFDWSAVFLVFAVMALVILVL  390 (400)
T ss_pred             HHHHHHHHHHHhCCccchHHHHHHHHHHHhhHHHHHHHHHHHHHHHHhcchhhhhHHHHHHHHHHHHHHHHHH
Confidence            45677789999999999999999864 4567888888888764          24666666666665544333

>PRK11663 regulatory protein UhpC; Provisional

Probab=93.68  E-value=0.22  Score=39.90  Aligned_cols=57  Identities=11%  Similarity=0.088  Sum_probs=44.6

Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865          9 LTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA   65 (156)
Q Consensus         9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~   65 (156)
                      ..++.|..|++.||...++.+....+|..+++.+...    .+|+..|.+.++.+++..+.
T Consensus       359 ~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~p~~~g~l~~~~g~~~~f~~~~~~~~~~~~~  419 (434)
T PRK11663        359 GMAAAECSHKEAAGAATGFVGLFAYLGAALSGYPLAKVLEIWHWTGFFVVISIAAGISALL  419 (434)
T ss_pred             HHHHHhcccHhhHHhHHHHHHHHHHHHHHHhcccHHHHHHhcccHHHHHHHHHHHHHHHHH
Confidence            4567899999999999999998888888887655443    47998888887776665443

>TIGR02718 sider_RhtX_FptX siderophore transporter, RhtX/FptX family

Probab=93.22  E-value=0.47  Score=37.27  Aligned_cols=60  Identities=12%  Similarity=0.177  Sum_probs=44.4

Q ss_pred             hhHHHHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQP-HLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA   65 (156)
Q Consensus         6 ~~~~~~i~E~~~~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~   65 (156)
                      +....++.+..++ +.+|+..++.+....+|..+++.++..    .+|+..|.+.++..++.++.
T Consensus       322 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~lg~~~g~~~~G~l~~~~G~~~~f~~~~~~~l~a~~~  386 (390)
T TIGR02718       322 VAIYTAFMRFAGDGDQAGTDVTAVQSTRDLGELIASSIAGYLTDRFGYAGGFLSGTVLAVLAILL  386 (390)
T ss_pred             HHHHHHHHHHhCcccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHHccHHHHHHHHHHHHHHHHH
Confidence            3444566677766 889999999888889998888877654    47888888887766665443

RhtX from Sinorhizobium meliloti 2011 and FptX from Pseudomonas aeruginosa appear to be single polypeptide transporters, from the major facilitator family (see pfam07690) for import of siderophores as a means to import iron. This function was suggested by proximity to siderophore biosynthesis genes and then confirmed by study of knockout and heterologous expression phenotypes.

>TIGR00788 fbt folate/biopterin transporter

Probab=93.21  E-value=0.11  Score=42.33  Aligned_cols=66  Identities=17%  Similarity=0.042  Sum_probs=42.0

Q ss_pred             hHHHHHHhhcCcchhHHHHHHHHHHHH---HHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhccCCh
Q psy15865          7 LVLTYVAEITQPHLRGMLSATASMTTI---FGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFIPESP   73 (156)
Q Consensus         7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~---~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~lpESp   73 (156)
                      .+-.++.|..+ +.+....+.....|.   +|.+++..++..    .+||..|++.++..++.++..++++|.+
T Consensus       140 ~~da~~~e~~~-~~~~~~~~~~s~~~~~~~~G~~vg~~l~G~l~~~~~~~~~f~~~a~l~ll~~~~~~~~~E~~  212 (468)
T TIGR00788       140 LVDSLYSERIR-ESPSAGPSLVSWMWGASATGGLISSLLGGPLLDKTLTRILFLITAALLLLQLFVSNLSKERR  212 (468)
T ss_pred             hHHHHHhhhhh-cCCCcCCCeeeHHHHHHHHHHHHHHHHHHHHHHhcCcchHHHHHHHHHHHHHHHHHhccccc
Confidence            34457788887 444333333333333   566666655543    5899999999888777666667788863

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>PRK09584 tppB putative tripeptide transporter permease; Reviewed

Probab=93.08  E-value=0.53  Score=38.77  Aligned_cols=40  Identities=20%  Similarity=0.175  Sum_probs=33.3

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG   43 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~   43 (156)
                      ..|+...++.+.+|++.||+..+++.+...+|.+++..+.
T Consensus       399 ~~p~g~s~~~~~aP~~~rg~~~g~~~l~~a~g~~~~g~~~  438 (500)
T PRK09584        399 ISGLGLAMVAQLVPQRLMGFIMGSWFLTTAGAALIAGYVA  438 (500)
T ss_pred             HhHHHHHHHHHhCcHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            4567778899999999999999999888888887765554

>PRK12307 putative sialic acid transporter; Provisional

Probab=92.97  E-value=0.44  Score=37.69  Aligned_cols=41  Identities=10%  Similarity=0.040  Sum_probs=32.8

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF   45 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~   45 (156)
                      .+..+.++.|..|++.||+..++......+|..+++.+...
T Consensus       339 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~~~~gp~~~g~  379 (426)
T PRK12307        339 GGLVPKFLYDYFPLEVRGLGTGLIYNLAATSGTFNSMAATW  379 (426)
T ss_pred             hHHHHHHHHHhCcHHHHhhhhhHHHHHHhHHHHHHHHHHHH
Confidence            34567788999999999999998877777788777776543

>PRK03633 putative MFS family transporter protein; Provisional

Probab=92.80  E-value=0.59  Score=36.60  Aligned_cols=40  Identities=30%  Similarity=0.188  Sum_probs=32.5

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF   45 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~   45 (156)
                      +.....+.+..++++|++..+..+.++.+|..+++.++..
T Consensus       113 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~g~~~~~~  152 (381)
T PRK03633        113 VVVESALMCSGTSRNRGRLLAAYMMVYYLGTVLGQLLVSK  152 (381)
T ss_pred             HHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHhc
Confidence            3445567788899999999999999999999888877654

>TIGR00788 fbt folate/biopterin transporter

Probab=92.74  E-value=0.64  Score=37.93  Aligned_cols=66  Identities=23%  Similarity=0.332  Sum_probs=45.7

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------------hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------------HWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------------~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      +....+++++.+|++.+|...++.+....+|..++..++...             -|.+ ..++.++.++.+.+.+++|+
T Consensus       369 ~~~~~~~~~~~~p~~~egt~~al~~s~~~lg~~v~~~~gg~l~~~~g~~~~~~~~~~~~-i~i~~~~~l~~l~~~~llP~  447 (468)
T TIGR00788       369 FMPFLVLLARLCPSGCESSVFALLASILHLGSSVSGFLGVLLMETIGITCDNSNNLWLL-ILGHSLAPLLPLPLLHLLPR  447 (468)
T ss_pred             HccHHHHHHHhCCCCceehHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHH-HHHHHHHHHHHHHHHHhCCC
Confidence            344578899999999999999998888899888888765531             2332 23333444444555557887

The only functionally characterized members of the family are from protozoa and include FT1, the major folate transporter in Leishmania, and BT1, the Leishmania biopterin/folate transporter. A related protein in Trypanosoma brucei, ESAGIO, shows weak folate/biopterin transport activity.

>KOG3764|consensus

Probab=92.68  E-value=0.098  Score=42.09  Aligned_cols=66  Identities=12%  Similarity=0.069  Sum_probs=53.5

Q ss_pred             cchhHHHHHHhhcCcch-hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          4 PLVLVLTYVAEITQPHL-RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~-Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      ..+....++++..|.+. |+.+++..-.+.++|.++++.++.+    .|.+.+|++.++.+++...+.+++
T Consensus       176 ~~tsglamlAd~f~~d~er~~vmGialgfislG~lvgPpfGGilYe~~Gk~aPFlVL~~v~Lld~~L~l~v  246 (464)
T KOG3764|consen  176 ADTSGLAMLADVFPEDNERGSVMGIALGFISLGVLVGPPFGGILYEFAGKSAPFLVLAIVLLLDGALQLLV  246 (464)
T ss_pred             HHhhhHHHHHHHcccchhhhHHHHHHHHHHhccceecCCcccchHhhcCCcCcHHHHHHHHHHHHHHHHhe
Confidence            34566778888888855 7999999988999999998888764    499999999999988876666555

>TIGR00882 2A0105 oligosaccharide:H+ symporter

Probab=92.55  E-value=0.36  Score=37.96  Aligned_cols=68  Identities=12%  Similarity=0.085  Sum_probs=36.0

Q ss_pred             hhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHh-hccCChH
Q psy15865          6 VLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALY-FIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~-~lpESp~   74 (156)
                      +....++.+..+.+.  .|.......+++.+|..++..+. ..+||.+|++.++.+++..+..+ ..||.|.
T Consensus       118 ~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~l~-~~~~~~~f~~~~~~~~~~~~~~~~~~~~~~~  188 (396)
T TIGR00882       118 GAIEAYIEKVSRNSNFEYGKARMFGCVGWALCASIAGILF-SIDPQIVFWLGSGFALILMLLLMFAKPKAPS  188 (396)
T ss_pred             hhHHHHHHHhhhhcccccchhhhhcccHHHHHHHHHhhhh-ccCchHHHHHHHHHHHHHHHHHHHhCCCCch
Confidence            334445555433221  13333333444445554444332 24999999999888776644443 3566543

>PRK03545 putative arabinose transporter; Provisional

Probab=92.41  E-value=1.1  Score=35.27  Aligned_cols=60  Identities=17%  Similarity=0.104  Sum_probs=41.8

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----hhhHHHHHHHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----FLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      +....++.+..| +.|++..++......+|..+++.++.    ..+++..+.+.++..++.++..
T Consensus       313 ~~~~~~~~~~~~-~~~~~~~g~~~~~~~~g~~~G~~~~G~~~~~~g~~~~~~~~~~~~~~~~~~~  376 (390)
T PRK03545        313 LAMQVKVLKLAP-DATDVAMALFSGIFNIGIGAGALLGNQVSLHLGLSSIGYVGAALALAALVWS  376 (390)
T ss_pred             HHHHHHHHHhCC-CcHHHHHHHHHHHHHHHHHHHHHHHHHHHhccChhHHHHHHHHHHHHHHHHH
Confidence            344566777766 57888887776666666666666544    4689999999888777655443

>PF11700 ATG22: Vacuole effluxer Atg22 like; InterPro: IPR024671 Autophagy is a major survival mechanism in which eukaryotes recycle cellular nutrients during stress conditions

Probab=92.40  E-value=0.83  Score=37.58  Aligned_cols=71  Identities=13%  Similarity=0.118  Sum_probs=54.3

Q ss_pred             CCccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865          1 MAAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus         1 iG~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      +|+..+..-.+.+|+.|+.+.+..-+++.+.--...++++++...    . +-|+.+....++.++.+++++++++
T Consensus       394 ~G~~qs~sRs~~~~LiP~g~e~efFgly~i~gk~ss~lGPll~g~i~~~tg~~r~g~~~l~~lf~~gl~ll~~v~~  469 (477)
T PF11700_consen  394 MGGIQSASRSLFSRLIPPGREAEFFGLYAITGKASSWLGPLLFGLITDATGSQRYGFLFLLVLFLIGLILLFFVDV  469 (477)
T ss_pred             hhhHHHHHHHHHHHhCCCchhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCchhHHHHHHHHHHHHHHHHhhccc
Confidence            467788889999999999999999999888777777777766443    2 4677777777777776666666655

Atg22, Avt3 and Avt4 are partially redundant vacuolar effluxers, which mediate the efflux of leucine and other amino acids resulting from autophagy []. This family also includes other transporter proteins.

>TIGR00897 2A0118 polyol permease family

Probab=92.32  E-value=0.89  Score=35.95  Aligned_cols=59  Identities=5%  Similarity=0.055  Sum_probs=43.9

Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865         10 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus        10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      ..+.|..| ++||...++.+....+|..+++.++..    .+|...+++.++..++..+..+|+
T Consensus       338 ~~~~~~~~-~~~g~~~g~~~~~~~lg~~~gp~i~g~l~~~~g~~~~~~~~a~~~~i~~~~~~~~  400 (402)
T TIGR00897       338 AVFPTLAP-KHKGAAMSVLNLSAGLSAFLAPAIAVLFIGFFGAIGVVWIFAALYVVSAFLTAFI  400 (402)
T ss_pred             HHHHhhCc-chhHHHHHHHHHHHHHHHHHHHHHHHHHHhhcchHHHHHHHHHHHHHHHHHHHHh
Confidence            34567655 589999999998888888887766543    488888888888777766655553

This family of proteins includes the ribitol and D-arabinitol transporters from Klebsiella pneumoniae and the alpha-ketoglutarate permease from Bacillus subtilis.

>TIGR00903 2A0129 major facilitator 4 family protein

Probab=92.26  E-value=0.48  Score=37.37  Aligned_cols=62  Identities=10%  Similarity=0.197  Sum_probs=41.6

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh-hh-hHHHHHHHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS-FL-HWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~-~~-~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ++....+.+|..|++.||+..++......+|..+++.+.. .. +-...|.+-+++.++..+..
T Consensus       298 ~~~~~~~~~~~~p~~~rgt~~G~~~~~g~~~~~~~~~~~~~~~~~~~~~f~~~~~~~~i~~~~~  361 (368)
T TIGR00903       298 YAIIMDWIGKFCDKELHGKAAGAIGFTSRAISVALALAAMLFISSAEAYFTFLAILITIAFAIA  361 (368)
T ss_pred             HHHHHHHHHHhcchhhcCcccchhhHHHHHHHHHHHHHHHHHhcCHHHHHHHHHHHHHHHHHHH
Confidence            3556678999999999999999988877777766554443 22 44455555555555544433

This family of proteins are uncharacterized proteins from archaea. This family includes proteins from Archaeoglobus fulgidus and Aeropyrum pernix.

>PRK08633 2-acyl-glycerophospho-ethanolamine acyltransferase; Validated

Probab=92.19  E-value=0.64  Score=41.73  Aligned_cols=70  Identities=19%  Similarity=0.177  Sum_probs=44.7

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      ..+...+++.+.+|.+.||+..++.++...+|.+++..++..     .++...+++.+...++. ++..+++|++-
T Consensus       339 ~~~~~~~~~~~~~p~~~rg~~~~~~~~~~~lg~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  414 (1146)
T PRK08633        339 FIVPLNALIQFRAPEKELGKVLAANNFLQNVGMLLFLALTTLFSGLGLSPAGLFYLIALVTLIGTLYTLLLLPDSL  414 (1146)
T ss_pred             hhHHHHHHHhhcCCccchhhhhHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHHHHHHHHHHHHHhHHHH
Confidence            345567788999999999999998888877777666555443     24555555554443332 23334456554

>PRK10406 alpha-ketoglutarate transporter; Provisional

Probab=92.05  E-value=0.44  Score=38.13  Aligned_cols=63  Identities=10%  Similarity=0.074  Sum_probs=36.2

Q ss_pred             hHHHHHHhhcCcchhHHHHHHHHHH-HHH-HHHHHHHhhhh---hh-HHHHHHHHHHHHHHHHHHHhhcc
Q psy15865          7 LVLTYVAEITQPHLRGMLSATASMT-TIF-GTVSQLFLGSF---LH-WRSAAILNLLFPILALCALYFIP   70 (156)
Q Consensus         7 ~~~~~i~E~~~~~~Rg~~~~~~~~~-~~~-G~~l~~~~~~~---~~-Wr~~~~~~~~~~~~~~~~~~~lp   70 (156)
                      ....++.|++|++.|+...++.... ..+ |.. .+.+...   .+ |...++..++..++.++..++++
T Consensus       356 ~~~~~~~e~fp~~~r~t~~g~~~~~g~~~~g~~-~p~~~~~l~~~g~~~~~~~~~~~~~~i~~~~~~~l~  424 (432)
T PRK10406        356 ISGILKAEMFPAQVRALGVGLSYAVANALFGGS-AEYVALSLKSIGMETAFFWYVTLMAVVAFLVSLMLH  424 (432)
T ss_pred             HHHHHHHHHCCCCccchhhhHHHHHHHHHHHhH-HHHHHHHHHHhCCCcHHHHHHHHHHHHHHHHHHHhh
Confidence            4556789999999999999876433 222 332 3332222   13 55555555555555555444443

>KOG0255|consensus

Probab=91.82  E-value=0.66  Score=38.09  Aligned_cols=71  Identities=21%  Similarity=0.352  Sum_probs=48.6

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh--HHHH-HH-HHHHHHHHHHHHHhhccCChH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH--WRSA-AI-LNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~--Wr~~-~~-~~~~~~~~~~~~~~~lpESp~   74 (156)
                      .+...+.+.+|..|...|....+...+...+|.++++.+-....  +..+ +. ...+..+..++...++||+..
T Consensus       423 ~~~~~~~~~~el~pt~~r~~~~~~~~~~~~~~~i~ap~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~lpet~~  497 (521)
T KOG0255|consen  423 AFNLIFLYSAELIPTVVRNTAVGAISAAARLGSILAPLFPLLLRQMFPLLGLILFGWLALLLGLLSLLLLPETKG  497 (521)
T ss_pred             HHHHHHHHHHhhccHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhcccchHHHHHHHHHHHHHHHHhcCcccCC
Confidence            34456788899999999999999999999999999887765321  1111 11 223333344455578999853

>PRK11646 multidrug resistance protein MdtH; Provisional

Probab=91.76  E-value=0.26  Score=39.16  Aligned_cols=60  Identities=15%  Similarity=0.146  Sum_probs=42.1

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-------h-HHHHHHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-------H-WRSAAILNLLFPILALCA   65 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-------~-Wr~~~~~~~~~~~~~~~~   65 (156)
                      +....++.+..|++.||+..++.+....+|..+++.++...       + -...+....+.+++..+.
T Consensus       316 p~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~ig~~l~G~l~~~~~~~~~~~~~~~~~~~~~~~~~~~  383 (400)
T PRK11646        316 PARETLSASLADARARGSYMGFSRLGLALGGAIGYIGGGWLFDLGKALNQPELPWMMLGIIGLITLLA  383 (400)
T ss_pred             ccHHHHHHhcCCcccchhhhhHHHHHHHHHHHhcccchHHHHHHHhhcCCcchHHHHHHHHHHHHHHH
Confidence            45567788999999999999999999989988887776542       1 134444444444444433

>TIGR00712 glpT glycerol-3-phosphate transporter

Probab=91.65  E-value=0.24  Score=39.76  Aligned_cols=63  Identities=14%  Similarity=0.222  Sum_probs=40.9

Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHHHH-HHHHHHhhh----hhhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865         10 TYVAEITQPHLRGMLSATASMTTIFG-TVSQLFLGS----FLHWRSAAILNLLFPILA-LCALYFIPES   72 (156)
Q Consensus        10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G-~~l~~~~~~----~~~Wr~~~~~~~~~~~~~-~~~~~~lpES   72 (156)
                      ..+.|.+|++.||...++.+....+| .++++.+..    ..+|...+.+.....++. ....+.+||.
T Consensus       368 ~~~~~~~~~~~~g~~~g~~~~~~~~gg~~~gp~l~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~  436 (438)
T TIGR00712       368 LHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIVVMIGE  436 (438)
T ss_pred             HHHHHhcChhheeeehhhhchHHHhhhhhhcchhHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHhhc
Confidence            35679999999999999886654444 445544433    247888877766654444 4444566774

This model describes a very hydrophobic protein, predicted to span the membrane at least 8 times. The two members confirmed experimentally as glycerol-3-phosphate transporters, from E. coli and B. subtilis, share more than 50 % amino acid identity. Proteins of the hexose phosphate and phosphoglycerate transport systems are also quite similar.

>PRK11902 ampG muropeptide transporter; Reviewed

Probab=91.49  E-value=0.63  Score=36.79  Aligned_cols=60  Identities=17%  Similarity=0.267  Sum_probs=35.7

Q ss_pred             hHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15865          7 LVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         7 ~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ....++.+..|.+.++...++..++..++..++..+....+|+.+|.+.++.+++.++..
T Consensus       327 ~~~~~~~~~~~~~~~~~~~~~~~l~~~~~~~~~G~l~~~~G~~~~f~~~~~~~~~~~~~~  386 (402)
T PRK11902        327 LLMALCNRSFSATQYALLSALASVGRVYVGPTSGYLVEAYGWPGFYLMTVVIALPGLALL  386 (402)
T ss_pred             HHHHhcCCCCcHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            344455666666666554444333333333334344445799999999998887765554

>TIGR00891 2A0112 putative sialic acid transporter

Probab=91.47  E-value=0.4  Score=37.28  Aligned_cols=42  Identities=10%  Similarity=0.007  Sum_probs=34.4

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF   45 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~   45 (156)
                      ..+..+.++.|..|++.||+..++.+....+|..+++.+...
T Consensus       345 ~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~g~~~g~~~~g~  386 (405)
T TIGR00891       345 IWGILPKHLGEYFPTDQRAAGLGFTYQLGNLGGALAPIIGAL  386 (405)
T ss_pred             chhhHHHHHhhhCCcchhHHHhhHHHHHHHHHHHHHHHHHHH
Confidence            445677899999999999999999887778888887777654

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=91.39  E-value=1.3  Score=36.83  Aligned_cols=55  Identities=18%  Similarity=0.085  Sum_probs=39.4

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPI   60 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~   60 (156)
                      +...+.+.+..|++.||+..+++++....|..++.++.+.    .+-+..+.++++..+
T Consensus       326 ~~~~t~~Q~~~P~~~~GRv~si~~~~~~g~~~lGsll~G~la~~~g~~~al~~a~~~ll  384 (524)
T PF05977_consen  326 SSLNTLVQLSVPDWVRGRVFSIYQMVFFGGMPLGSLLWGFLADHFGVRTALLIAGAALL  384 (524)
T ss_pred             HHHHHHHHHhCCHHHHhHHHHHHHHHHHHHHHHHHHHHHHHHHHhCHHHHHHHHHHHHH
Confidence            3445677899999999999999887777666666666543    466766666655433

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR00883 2A0106 metabolite-proton symporter

Probab=91.30  E-value=0.16  Score=39.16  Aligned_cols=57  Identities=5%  Similarity=0.013  Sum_probs=37.9

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPI   60 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~   60 (156)
                      ..+....++.|..|++.|++..++ .++...+|..+++.++..    .+ |+..++.....++
T Consensus       329 ~~~~~~~~~~~~~p~~~~~~~~~~~~~~~~~~g~~~~p~~~g~l~~~~g~~~~~~~~~~~~~l  391 (394)
T TIGR00883       329 YTGPMGSFLPELFPTEVRYTGASLAYNLAGAIFGGFAPYIAAALVAMTGDWYAIGYYLAALAL  391 (394)
T ss_pred             HhhhHHHHHHHhCCccceeeEeeehhHhHHHHHhhHHHHHHHHHHHHcCcchhHHHHHHHHHH
Confidence            345677788999999999987776 445555666566555443    34 8777666655443

This model represents the metabolite:H+ symport subfamily of the major facilitator superfamily (pfam00083), including citrate-H+ symporters, dicarboxylate:H+ symporters, the proline/glycine-betaine transporter ProP, etc.

>PRK09528 lacY galactoside permease; Reviewed

Probab=91.05  E-value=0.31  Score=38.70  Aligned_cols=53  Identities=19%  Similarity=0.222  Sum_probs=30.4

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhh-ccCC
Q psy15865         20 LRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYF-IPES   72 (156)
Q Consensus        20 ~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~-lpES   72 (156)
                      .+|...+..+.+..+|..+++.++..   .+|+.+|++.++.+++.++..++ .+|.
T Consensus       138 ~~g~~~g~~~~~~~~g~~i~~~~~g~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  194 (420)
T PRK09528        138 RSGFEYGRARMWGSLGWALCAFIAGILFNINPQINFWLGSGSALILLVLLFFAKPDA  194 (420)
T ss_pred             hccccchhhHHhhhHHHHHHHHHHHHHHhcCchHhHHHHHHHHHHHHHHHhcccccc
Confidence            34444444444444555555444332   48999999988887766555544 3443

>PF00083 Sugar_tr: Sugar (and other) transporter; InterPro: IPR005828 Recent genome-sequencing data and a wealth of biochemical and molecular genetic investigations have revealed the occurrence of dozens of families of primary and secondary transporters

Probab=90.81  E-value=0.018  Score=46.07  Aligned_cols=68  Identities=22%  Similarity=0.290  Sum_probs=41.7

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~~~lpES   72 (156)
                      .+....+..|..|.+.|+...++.....-+|.++++.+...    .+ +-......++..+...+.++++|||
T Consensus       367 ~~~~~~~~~ElfPt~~R~~~~~~~~~~~~i~~~i~~~~~~~~~~~~~~~~~~~i~~~~~~i~~i~~~~~lpET  439 (451)
T PF00083_consen  367 GPLPWIYTAELFPTKVRSTGIGLSYAVGRIGGFIIPFLFPYLFNNLGGWGVFLIFAGVCLIAIIFVYFFLPET  439 (451)
T ss_pred             cccccccccccccccccccccccccccccccccccccccccccccccccccchhhHHHHHHHHhheeEEEeeC
Confidence            34555788999999999998887665555555554444322    22 3333333333344445556789998

Two such families have been found to occur ubiquitously in all classifications of living organisms. These are the ATP-binding cassette (ABC) superfamily and the major facilitator superfamily (MFS), also called the uniporter-symporter-antiporter family. While ABC family permeases are in general multicomponent primary active transporters, capable of transporting both small molecules and macromolecules in response to ATP hydrolysis the MFS transporters are single-polypeptide secondary carriers capable only of transporting small solutes in response to chemiosmotic ion gradients. Although well over 100 families of transporters have now been recognised and classified, the ABC superfamily and MFS account for nearly half of the solute transporters encoded within the genomes of microorganisms. They are also prevalent in higher organisms. The importance of these two families of transport systems to living organisms can therefore not be overestimated []. The MFS was originally believed to function primarily in the uptake of sugars but subsequent studies revealed that drug efflux systems, Krebs cycle metabolites, organophosphate:phosphate exchangers, oligosaccharide:H1 symport permeases, and bacterial aromatic acid permeases were all members of the MFS. These observations led to the probability that the MFS is far more widespread in nature and far more diverse in function than had been thought previously. 17 subgroups of the MFS have been identified []. Evidence suggests that the MFS permeases arose by a tandem intragenic duplication event in the early prokaryotes. This event generated a 2-transmembrane-spanner (TMS) protein topology from a primordial 6-TMS unit. Surprisingly, all currently recognised MFS permeases retain the two six-TMS units within a single polypeptide chain, although in 3 of the 17 MFS families, an additional two TMSs are found []. Moreover, the well-conserved MFS specific motif between TMS2 and TMS3 and the related but less well conserved motif between TMS8 and TMS9 [] prove to be a characteristic of virtually all of the more than 300 MFS proteins identified.; GO: 0022857 transmembrane transporter activity, 0055085 transmembrane transport, 0016021 integral to membrane

>PRK10504 putative transporter; Provisional

Probab=90.73  E-value=1.2  Score=35.85  Aligned_cols=40  Identities=10%  Similarity=-0.019  Sum_probs=31.3

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS   44 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~   44 (156)
                      .+....++.+..|++.||...++.++...+|..++..++.
T Consensus       371 ~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~g~~ig~~i~g  410 (471)
T PRK10504        371 FSSMNTLTLKDLPDNLASSGNSLLSMIMQLSMSIGVTIAG  410 (471)
T ss_pred             HHHHHHHHHHcCCHHhccchHHHHHHHHHHHHHHHHHHHH
Confidence            3445567778999999999999988888888877766654

>TIGR00881 2A0104 phosphoglycerate transporter family protein

Probab=90.66  E-value=0.26  Score=37.76  Aligned_cols=46  Identities=13%  Similarity=0.259  Sum_probs=35.1

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSA   51 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~   51 (156)
                      +....++.|..|++.||+..++.+....+|..+++.+...    .+|+..
T Consensus       329 ~~~~~~~~~~~~~~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~g~~~~  378 (379)
T TIGR00881       329 MLIGVIASELAPKKAAGTAAGFVGFFAYLGGILAGLPLGYLADGFGWAGA  378 (379)
T ss_pred             HHHHHHHHHhcCcchhHHHHHHHHHhhhhhhhhhhhhHHHHHHhhccccc
Confidence            4445678999999999999999988888888877766543    356543

>PRK09556 uhpT sugar phosphate antiporter; Reviewed

Probab=90.37  E-value=1.3  Score=35.84  Aligned_cols=58  Identities=10%  Similarity=0.104  Sum_probs=38.4

Q ss_pred             HHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHh-hh---------------hhhHHHHHHHHHHHHHHHHHHH
Q psy15865          9 LTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFL-GS---------------FLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         9 ~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~-~~---------------~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..++.|..|++.||...++......+ |..+++.+ +.               ..+|+..|++..+..++.++..
T Consensus       371 ~~~~~~~~p~~~~g~a~gi~~~~g~l~g~~~~~~~~G~i~~~~~~g~~~~~~~~~~~~~~f~~~~~~~~~~~~~~  445 (467)
T PRK09556        371 GVAAVGFVPKKAIGVANGIKGTFAYLFGDSFAKVGLGMIADPTKNGTPIFGYTLTGWAGTFAALDIAAIGCICLM  445 (467)
T ss_pred             HHHHHhhcchhhHHHHHHHHHHHHHHHhHHHHhhhHHHHhcccccccccccccccChHHHHHHHHHHHHHHHHHH
Confidence            35678999999999999998766554 53343222 21               2359998888766666554443

>PRK06814 acylglycerophosphoethanolamine acyltransferase; Provisional

Probab=89.47  E-value=1  Score=40.64  Aligned_cols=54  Identities=11%  Similarity=0.079  Sum_probs=38.4

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLF   58 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~   58 (156)
                      .+...+++.+.+|++.||++.++.++...+|..++.++...     .++...+++.++.
T Consensus       352 ~~~~~~~~~~~~p~~~~G~v~g~~~~~~~~~~~ig~~~~g~l~~~~~~~~~~~~~~~~~  410 (1140)
T PRK06814        352 IVPLFAALQAWANPAHRARVIAANNVLNAAFMVAGTIILALLQALGFSIPWIILFIALA  410 (1140)
T ss_pred             HHHHHHHHHhhCCcccceeeeHHHHHHHHHHHHHHHHHHHHHHHhccCHHHHHHHHHHH
Confidence            34566788999999999999999888888877777666443     2445555444443

>PF03209 PUCC: PUCC protein; InterPro: IPR004896 This protein is required for high-level transcription of the PUC operon

Probab=88.95  E-value=4.3  Score=32.78  Aligned_cols=42  Identities=14%  Similarity=0.104  Sum_probs=34.6

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF   45 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~   45 (156)
                      ..+...++++|.+|+++|++..++.-+...+|.+++.++...
T Consensus       106 s~T~~lALl~D~~~e~~R~~~v~ivw~Mli~G~iv~ai~~g~  147 (403)
T PF03209_consen  106 SGTSFLALLADLAPEERRPRVVAIVWVMLIVGIIVSAIVFGR  147 (403)
T ss_pred             hHHHHHHHHHhcCCHhhhhhhHHHHHHHHHHHHHHHHHHHHH
Confidence            345566788999999999999999888888899988777653

It is an integral membrane protein. The family includes other proteins form Rhodobacter eg. bacteriochlorophyll synthase.

>KOG0253|consensus

Probab=88.03  E-value=0.16  Score=40.87  Aligned_cols=70  Identities=17%  Similarity=0.147  Sum_probs=50.7

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh--hHHHHHHHHHHHHHHHHHHHhhccC
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL--HWRSAAILNLLFPILALCALYFIPE   71 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~--~Wr~~~~~~~~~~~~~~~~~~~lpE   71 (156)
                      .+.+.++++|.-|+.|...|+...+......-+|.+++++++.-.  +=-.+..+-...+++..+..+++|=
T Consensus       449 sg~fqvaYvYtPEVyPTavRatgvGtcSsmaRIggI~~p~iA~~~e~s~sl~i~vy~~~~ilagIavcffPi  520 (528)
T KOG0253|consen  449 SGAFQVAYVYTPEVYPTAVRATGVGTCSSMARIGGIFSPVIAMRAELSTSLPIFVYGALFILAGIAVCFFPI  520 (528)
T ss_pred             hchheEEEEecCcccchhhhhcchhhhhhHHhhhhhhhhHHHHHhccceeehHHHHHHHHHHHHHHheeeee
Confidence            466778899999999999999999998888888999998887421  2223344445555555555666663

>KOG3626|consensus

Probab=87.97  E-value=1.5  Score=38.05  Aligned_cols=68  Identities=18%  Similarity=0.391  Sum_probs=52.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------------hHHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------------HWRSAAILNLLFPIL   61 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------------~Wr~~~~~~~~~~~~   61 (156)
                      ++....|+=|....++-..+.++......+|+++|++++.+.                       .|..-|++++...++
T Consensus       255 ~tlGisYiDDnvk~~~SplYlgi~~~~~~lGPaiGfllgS~~l~lYvD~~~~~~~it~~DPrWIGAWWlGFLi~g~~~~~  334 (735)
T KOG3626|consen  255 FTLGISYIDDNVKKKNSPLYLGILYSMAILGPAIGFLLGSFCLKLYVDFGLSPIGITPTDPRWIGAWWLGFLICGALLLF  334 (735)
T ss_pred             ccCCCccccccccccCCcHHHHHHHHHHHhhhHHHHHHHHHHHHeeeccccCCCCCCCCCcchhhHHHHHHHHHHHHHHH
Confidence            455667888888888889999998888888998888887641                       688888888888777


Q ss_pred             HHHHHhhccCC
Q psy15865         62 ALCALYFIPES   72 (156)
Q Consensus        62 ~~~~~~~lpES   72 (156)
                      ..+.+++.|..
T Consensus       335 ~a~p~f~fPk~  345 (735)
T KOG3626|consen  335 SAVPLFFFPKE  345 (735)
T ss_pred             HHHHHHhCccc
Confidence            65555555544

>TIGR00902 2A0127 phenyl proprionate permease family protein

Probab=87.19  E-value=3.6  Score=32.25  Aligned_cols=61  Identities=11%  Similarity=0.001  Sum_probs=39.1

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA   65 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~   65 (156)
                      ...+....|+.+. |++.|+...+++. +.+.+|..+++.+++.    .++ ..+++.++.+++.++.
T Consensus       309 ~~~~~~~~~i~~~-~~~~~~~~q~~~~~~~~g~g~~~g~~~~G~l~~~~g~-~~~~~~~~~~~~~~~~  374 (382)
T TIGR00902       309 VCHLAAMRYIAAQ-PGSEIAKLQALYNALAMGGLIAIFTAFAGFIYPTLGA-GTFVFMAIIAAAAFFL  374 (382)
T ss_pred             HHHHHHHHHHHhC-CHhhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccH-HHHHHHHHHHHHHHHH
Confidence            3456677788887 9999988888764 4666777777766654    355 3345555554444433

This family of proteins is involved in the uptake of 3-phenylpropionic acid. This uptake mechanism is for the metabolism of phenylpropanoid compounds and plays an important role in the natural degradative cycle of these aromatic molecules.

>PF03092 BT1: BT1 family; InterPro: IPR004324 Members of this family are transmembrane proteins

Probab=87.08  E-value=6.3  Score=31.91  Aligned_cols=67  Identities=19%  Similarity=0.300  Sum_probs=44.6

Q ss_pred             HHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh------------hHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865          8 VLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL------------HWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus         8 ~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~------------~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      ..++++|++|+..-|..-++......+|..++..++..+            +--+..+++.+..++.+.+.+++|+..+
T Consensus       339 ~lvl~a~lcP~G~Egt~yall~s~~Nlg~~~s~~lg~~l~~~~~vt~~~f~~l~~lili~~~~~ll~l~ll~lLp~~~~  417 (433)
T PF03092_consen  339 SLVLAARLCPKGSEGTVYALLASFSNLGSSVSSTLGAFLMELFGVTRDDFSNLWLLILICSVIQLLPLPLLFLLPPQKR  417 (433)
T ss_pred             HHHHHHHHCCCCchHHHHHHHHHHHHHHHHHHHHHHHHHHHHcCCCcccccchHHHHHHHHHHHHHHHHHHHHcCCCch
Confidence            345779999999999988888777777777776665431            1223344444555555666677888654

Several are Leishmania putative proteins that are thought to be pteridine transporters [, ]. This family also contains five putative Arabidopsis thaliana proteins of unknown function as well as two predicted prokaryotic proteins (from the cyanobacteria Synechocystis and Synechococcus).

>KOG2325|consensus

Probab=87.04  E-value=3.1  Score=34.46  Aligned_cols=72  Identities=17%  Similarity=0.213  Sum_probs=47.5

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh-----------------hHHHHHHHHHHHHHHHHH-
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL-----------------HWRSAAILNLLFPILALC-   64 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~-----------------~Wr~~~~~~~~~~~~~~~-   64 (156)
                      ++.++.-.|+++.+..+.|.++.+....+..+|.++|+.++..+                 -+-.+-++..+..++.++ 
T Consensus       145 ~n~a~lR~Y~a~~s~~~dR~rA~a~~~~~~vlg~ilGp~~q~~f~~Lg~~G~~i~~~~~~n~YTap~w~m~i~~i~~~v~  224 (488)
T KOG2325|consen  145 GNFAVLRAYIADASTVEDRPRAFAATSGGFVLGIILGPTIQLAFTPLGEKGFMILPGLIFNMYTAPAWLMAILWIIYIVI  224 (488)
T ss_pred             ccHHHHHHHHHhccCccchHHHHHHhhhHHHHHHHHhHHHHHHHhhhcCCceEEcCcceEEecchHHHHHHHHHHHHHHH
Confidence            66778888999999888888888887777777777776664321                 133444555555555433 


Q ss_pred             HHhhccCChH
Q psy15865         65 ALYFIPESPH   74 (156)
Q Consensus        65 ~~~~lpESp~   74 (156)
                      +.+++.|.++
T Consensus       225 i~~~f~E~~~  234 (488)
T KOG2325|consen  225 ILFFFKEVYR  234 (488)
T ss_pred             HHhheeeccc
Confidence            3345677654

>PF13347 MFS_2: MFS/sugar transport protein

Probab=86.38  E-value=1.6  Score=34.84  Aligned_cols=62  Identities=19%  Similarity=0.351  Sum_probs=44.2

Q ss_pred             HHHHhhcCc-chhHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHHH-HHhhccC
Q psy15865         10 TYVAEITQP-HLRGMLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILALC-ALYFIPE   71 (156)
Q Consensus        10 ~~i~E~~~~-~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~~~~~~~~~~~~~~-~~~~lpE   71 (156)
                      ++..|++++ ++|.+..+.-+.+..+|.++...+...           .+|++...+.++..++..+ ..+..+|
T Consensus       126 al~~~lt~~~~~R~~l~~~~~~~~~~g~~l~~~~~~~l~~~~g~~~~~~~~~~~~~v~~iv~~v~~~i~~~~~ke  200 (428)
T PF13347_consen  126 ALIPELTPDPDERTRLSSWRMIFSMIGSLLASFLAPILVSWFGGGDTSNGYRWMALVLAIVGLVFFLITFFFVKE  200 (428)
T ss_pred             hcCccccccHhhhhhHHHHHHHHHHHHHHHHHHHhhhhhhhhccCccchHHHHHHHHHHHHHHHHhhhhhheeee
Confidence            356788875 689999998888888888654444321           1799999988888766544 4556788

>PLN00028 nitrate transmembrane transporter; Provisional

Probab=86.33  E-value=0.76  Score=37.45  Aligned_cols=59  Identities=17%  Similarity=0.079  Sum_probs=41.0

Q ss_pred             HHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh---hhhHHHHHHHHHHHHHHHHHHHhhcc
Q psy15865         11 YVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS---FLHWRSAAILNLLFPILALCALYFIP   70 (156)
Q Consensus        11 ~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~---~~~Wr~~~~~~~~~~~~~~~~~~~lp   70 (156)
                      ++.|+. ++.||...++...+..+|..++..+..   ..+|+..|++.++..++..+..++++
T Consensus       372 ~~~~~~-~~~~g~~~g~~~~~g~lg~~i~~~l~~~~~~~~y~~~f~~~~~~~~i~~~~~~~~~  433 (476)
T PLN00028        372 IVPFVS-RRSLGVISGLTGAGGNVGAVLTQLLFFTGSSYSTETGISLMGVMIIACTLPVAFIH  433 (476)
T ss_pred             cCcccC-hhhchhhhhhhhccccHHHHHHHHHHHhcCCccHhhHHHHHHHHHHHHHHHHHhee
Confidence            334543 468999998887777778877765533   23699999888877777666665554

>PRK03699 putative transporter; Provisional

Probab=86.28  E-value=2.1  Score=33.71  Aligned_cols=64  Identities=11%  Similarity=0.054  Sum_probs=41.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      ++....+..|..|.+ ++...+.......+|..+++.+...    .+|+..+++..+..++.+++...+
T Consensus       312 ~~~~~~~~~~~~~~~-~~~~~g~~~~~~~~g~~i~p~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  379 (394)
T PRK03699        312 YTTIITLGSQQTKVA-SPKLVNFILTCGTIGTMLTFVVTSPIVAHFGLQAALLTANGLYAVVFVMCILL  379 (394)
T ss_pred             HHHHHHHHHHHccCC-CHHHHHHHHHhhhHHHHHHHHHHHHHHHHhCchhhhhhhHHHHHHHHHHHHHH
Confidence            344555667777643 5556666666667777777666543    589998888887766665544433

>KOG3762|consensus

Probab=85.27  E-value=2.1  Score=36.04  Aligned_cols=66  Identities=15%  Similarity=0.230  Sum_probs=46.4

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHH-HHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATAS-MTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALY   67 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~-~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~   67 (156)
                      |..+.++..|++..+|++.|..+.++.+ ++.++|-=+++++++.    ++=|..|...++.+++.++++.
T Consensus       474 aliWaa~~sY~s~vaPp~l~at~Q~l~~g~f~GlG~g~GslIGG~~v~~fg~~ttf~~~giAcl~~l~~~~  544 (618)
T KOG3762|consen  474 ALIWAAIISYASHVAPPGLRATAQGLLQGIFHGLGKGLGSLIGGFVVERFGARTTFRIFGIACLVTLALFI  544 (618)
T ss_pred             HHHHHHHHHHHHhhCCCcchHHHHHHHHHHhcccCcchhhhhhhhhheeehhHHHHHHHHHHHHHHHHHHH
Confidence            3456788899999999999999888753 4445555555555553    5667777777777776655543

>PRK10207 dipeptide/tripeptide permease B; Provisional

Probab=84.89  E-value=5.4  Score=32.83  Aligned_cols=40  Identities=18%  Similarity=0.179  Sum_probs=33.6

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLG   43 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~   43 (156)
                      ..+....++...+|++.+|..++++.+...+|..++..++
T Consensus       396 ~~~~g~~~~~~~aP~~~~g~~~g~~~l~~~ig~~lg~~l~  435 (489)
T PRK10207        396 ISALGLAMIAALVPQHLMGFILGMWFLTQAAAFLLGGYVA  435 (489)
T ss_pred             HhHHHHHHHHHhChHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3456677888999999999999999988888888887665

>COG2807 CynX Cyanate permease [Inorganic ion transport and metabolism]

Probab=84.78  E-value=4.2  Score=32.54  Aligned_cols=64  Identities=20%  Similarity=0.170  Sum_probs=46.5

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhh----h-hhHHHHHHHHHHHHHHHHHHHh
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGS----F-LHWRSAAILNLLFPILALCALY   67 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~----~-~~Wr~~~~~~~~~~~~~~~~~~   67 (156)
                      ...+..|.++.+.+|++ -+..++++.+..++|..+++.+.-    . .+||..+.+=+.++++.+++++
T Consensus       115 v~nVLLPslIK~~Fpk~-~~~mtglYs~sl~~~aaLaa~lavpla~~~~gW~~aL~~WAl~allAl~~Wl  183 (395)
T COG2807         115 VINVLLPSLIKRDFPKR-VGLMTGLYSTSLGAGAALAAALAVPLAQHSGGWRGALGFWALLALLALLIWL  183 (395)
T ss_pred             HHHHhhhHHHHhhcccc-hhhHHhHHHHHHHHHHHHHhhhhhHHHHhhccHHHHHHHHHHHHHHHHHHHh
Confidence            34566788889999855 456677777777777777665543    2 3799999998999888877653

>PRK09669 putative symporter YagG; Provisional

Probab=84.69  E-value=6.4  Score=31.56  Aligned_cols=62  Identities=15%  Similarity=0.165  Sum_probs=38.9

Q ss_pred             HHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhh-----h------hhhHHHHHHHHHHHHHHHHHH-HhhccC
Q psy15865         10 TYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLG-----S------FLHWRSAAILNLLFPILALCA-LYFIPE   71 (156)
Q Consensus        10 ~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~-----~------~~~Wr~~~~~~~~~~~~~~~~-~~~lpE   71 (156)
                      ++.+|++ +.++|++..+.-..+..+|.+++..+.     .      ..+|+..+.+.++.+++.++. ++..+|
T Consensus       132 al~~~~t~~~~eR~~l~~~r~~~~~~G~~i~~~~~~pl~~~~~~~~~~~g~~~~~~i~~ii~~v~~~~~~~~~~e  206 (444)
T PRK09669        132 AMPGAITNDPRERHSLQSWRFALSFIGGLIVSVIALPLVDILGKGDEQKGYFYAMMVMGLLGVVLFFCCFFMTKE  206 (444)
T ss_pred             HhHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHhCCeEE
Confidence            4668888 447899887777666666666554322     1      137888887777766554433 334444

>KOG0254|consensus

Probab=84.66  E-value=3.3  Score=34.12  Aligned_cols=68  Identities=16%  Similarity=0.156  Sum_probs=38.1

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHH-HHHHHHHHHHHHHhhhhhhH---HHHHHHHHHHHHH-HH-HHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATA-SMTTIFGTVSQLFLGSFLHW---RSAAILNLLFPIL-AL-CALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~~~W---r~~~~~~~~~~~~-~~-~~~~~lpES   72 (156)
                      .++...+.+|+.|.+.|+...++. .+.|....++....-....+   ...|..-...+.+ .. ...+++||+
T Consensus       413 g~v~w~~~sEifp~~~r~~~~s~~~~~n~~~~~~v~~~~~~~~~~~~~~~~f~~f~~~~~~~~~~fv~~~~pET  486 (513)
T KOG0254|consen  413 GPVPWVIVSEIFPLRLRSKGASLAVAVNWLWNFLISFFFPFITEALGIGGTFGYFGGICLLSLIIFVFFFVPET  486 (513)
T ss_pred             ccchhhhhhccCcHhHHhhhHHHHHHHHHHHHHHHHHHHHHHHHhccccchHHHHHHHHHHHHHHHheEEcccC
Confidence            345556889999999999988774 44444444443322222222   2333333333333 33 456778997

>PRK10054 putative transporter; Provisional

Probab=84.63  E-value=3  Score=32.97  Aligned_cols=67  Identities=15%  Similarity=0.122  Sum_probs=39.0

Q ss_pred             hhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCCh
Q psy15865          6 VLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp   73 (156)
                      +....++.+..|++.|+.+.+..+. ..+|..+++.++..    .+-...+++..+...+.++ ....+.|.|
T Consensus       317 p~~~~~~~~~~p~~~~~~~~~~~~~-~~~G~~~Gp~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~  388 (395)
T PRK10054        317 PGEYMLIDHIAPPGMKASYFSAQSL-GWLGAAINPLVSGVILTTLPPWSLFVILALAIVAAWLLMLKGMRARP  388 (395)
T ss_pred             hhHHHHHHHhCCcccceehHhHHHH-HHHHHHHHHHHHHHHHHHcChhhHHHHHHHHHHHHHHHHHhccccCc
Confidence            4555678899999999988775543 33566666655443    4555566665444333333 333344444

>PRK11462 putative transporter; Provisional

Probab=83.42  E-value=7.1  Score=31.75  Aligned_cols=63  Identities=16%  Similarity=0.124  Sum_probs=41.5

Q ss_pred             HHHHhhcC-cchhHHHHHHHHHHHHHHHHHHHHhhhh-----------hhHHHHHHHHHHHHHHHH-HHHhhccCC
Q psy15865         10 TYVAEITQ-PHLRGMLSATASMTTIFGTVSQLFLGSF-----------LHWRSAAILNLLFPILAL-CALYFIPES   72 (156)
Q Consensus        10 ~~i~E~~~-~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----------~~Wr~~~~~~~~~~~~~~-~~~~~lpES   72 (156)
                      ++..|+++ .++|+.+.+.-+.+..+|.++++.+...           .+|+....+.++++++.. +.++..+|.
T Consensus       132 al~~~lt~d~~eRt~l~s~r~~~~~iG~~~~~~~~~plv~~~g~~~~~~g~~~~~~i~~ii~~i~~~i~~~~~kE~  207 (460)
T PRK11462        132 ALGGVITNDPTQRISLQSWRFVLATAGGMLSTVLMMPLVNLIGGDNKPLGFQGGIAVLSVVAFMMLAFCFFTTKER  207 (460)
T ss_pred             HHHHHhcCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhCCCchhhhHHHHHHHHHHHHHHHHHHHHhcceec
Confidence            35688887 5889999999888888887666544221           257877766666655443 333345664

>TIGR01301 GPH_sucrose GPH family sucrose/H+ symporter

Probab=83.36  E-value=3.3  Score=34.16  Aligned_cols=68  Identities=9%  Similarity=0.097  Sum_probs=49.0

Q ss_pred             hhHHHHHHhhcCcc--hhHHHHHHHHHHHHHHHHHHHHhhhhh------hHHHHHHHHHHHHHHH-HHHHhhccCCh
Q psy15865          6 VLVLTYVAEITQPH--LRGMLSATASMTTIFGTVSQLFLGSFL------HWRSAAILNLLFPILA-LCALYFIPESP   73 (156)
Q Consensus         6 ~~~~~~i~E~~~~~--~Rg~~~~~~~~~~~~G~~l~~~~~~~~------~Wr~~~~~~~~~~~~~-~~~~~~lpESp   73 (156)
                      .+=++++++..+.+  ..|..+++.+++..+.+++..+..+.+      +-.+.+.+.+++.++. ++.++.+|.++
T Consensus       399 siPfal~s~~~~~~~~~~G~~mgilN~~I~lpQii~sl~~g~~~~~~g~~~~~~~~~~gv~~~~aa~~~~~~~~~~~  475 (477)
T TIGR01301       399 SIPFALASIRSSNLGAGQGLSMGVLNLAIVIPQIIVSLGSGPWDQLFGGGNLPAFVVGAVAAFVSGLLALILLPRPR  475 (477)
T ss_pred             HHhHHHHHHHccccCCCCcchhhHHHHHHHHHHHHHHHHHHHHHHHcCCCCeeHHHHHHHHHHHHHHHHHHhCCCCC
Confidence            34466788888854  449999999999999999988655442      3456777888887765 44456678765

This model represents sucrose/proton symporters, found in plants, from the Glycoside-Pentoside-Hexuronide (GPH)/cation symporter family. These proteins are predicted to have 12 transmembrane domains. Members may export sucrose (e.g. SUT1, SUT4) from green parts to the phloem for long-distance transport or import sucrose (e.g SUT2) to sucrose sinks such as the tap root of the carrot.

>TIGR00894 2A0114euk Na(+)-dependent inorganic phosphate cotransporter

Probab=83.19  E-value=4.7  Score=32.42  Aligned_cols=57  Identities=11%  Similarity=0.215  Sum_probs=40.9

Q ss_pred             HHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-------hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865         12 VAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-------LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus        12 i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-------~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      ..|..|. .+|...++.+....+|.++++.+...       .+|+..|.+.++..++..+...+.
T Consensus       386 ~~~~~~~-~~g~~~g~~~~~~~l~~~i~p~l~g~~~~~~~~~~~~~~f~~~~~~~~i~~i~~~~~  449 (465)
T TIGR00894       386 SLDLAPR-FLGFIKGITGLPGFIGGLIASTLAGNILSQDSKNVWLIVFLIMAFVNILCVIFYLIF  449 (465)
T ss_pred             hhhcChh-HHHHHHHHHHHHHHHHHHHHHHhhheeeCCCCchHHHHHHHHHHHHHHHHHHHeeee
Confidence            3466654 89999999988888888887766442       248888888887777665544433

>COG0477 ProP Permeases of the major facilitator superfamily [Carbohydrate transport and metabolism / Amino acid transport and metabolism / Inorganic ion transport and metabolism / General function prediction only]

Probab=82.97  E-value=8.4  Score=27.64  Aligned_cols=59  Identities=20%  Similarity=0.335  Sum_probs=41.4

Q ss_pred             ccchhHHHHHHhhcCc-chhHHHHHHHHH-HHHHHHHHHHHhhhh------hhHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQP-HLRGMLSATASM-TTIFGTVSQLFLGSF------LHWRSAAILNLLFPIL   61 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~-~~Rg~~~~~~~~-~~~~G~~l~~~~~~~------~~Wr~~~~~~~~~~~~   61 (156)
                      ...+....++.|+.|. ..|+...+.... ...+|.++++.++..      .+||..+.+.......
T Consensus       110 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  176 (338)
T COG0477         110 GLLPVASALLSEWFPEATERGLAVGLVTLGAGALGLALGPLLAGLLLGALLWGWRAAFLLAALLGLL  176 (338)
T ss_pred             HHHHHHHHHHHHhcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHH
Confidence            3556778899999998 678888777766 566777777655432      3799876666665543

>PF05977 MFS_3: Transmembrane secretion effector; InterPro: IPR010290 This family consists of the enterobactin exporter EntS proteins and putative permeases all belonging to the major facilitator superfamily

Probab=82.90  E-value=15  Score=30.75  Aligned_cols=60  Identities=13%  Similarity=0.072  Sum_probs=43.8

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC   64 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~   64 (156)
                      .|.-.+++.|+.|+++-..+.++.++...+..++++.+++.    .|-.+.|++.++..++..+
T Consensus       121 ~PA~~A~ip~lV~~~~L~~A~al~s~~~niar~iGPalgG~Lva~~G~~~~f~inalsfl~~i~  184 (524)
T PF05977_consen  121 NPAWQAIIPELVPKEDLPAANALNSISFNIARIIGPALGGILVAFFGAAAAFLINALSFLISIL  184 (524)
T ss_pred             HHHHHHHHHHhccHhhHHHHHHHHHHHHHHHHhccchHHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            35566788999999999989998888888877777766654    4667777777765444333

EntS exports the siderophore enterobactin out of the cell. The genetic locus entS was changed from ybdA so as to reflect its relevant biological function [].

>TIGR02332 HpaX 4-hydroxyphenylacetate permease

Probab=82.78  E-value=1.5  Score=34.97  Aligned_cols=50  Identities=16%  Similarity=0.088  Sum_probs=37.3

Q ss_pred             HHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----h-hHHHHHHHHHHHH
Q psy15865         10 TYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----L-HWRSAAILNLLFP   59 (156)
Q Consensus        10 ~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~-~Wr~~~~~~~~~~   59 (156)
                      +...|..|++.|+...++.+....+|.++++.+...    . +|+..+.+..+..
T Consensus       356 ~~~~~~~~~~~~~~a~g~~~~~~~~g~~~~p~~~g~i~~~~g~~~~~~~~~~~~~  410 (412)
T TIGR02332       356 TTPDQSISLQARAIAIAVINATGNIGSALSPFLIGILKDATGSFNSGLWFVAALL  410 (412)
T ss_pred             hhcccccchHHHHHHHHHHHHhhhhhhhhhhhhcccccccCCCCchhHHHHHHHH
Confidence            344678899999999999988888888888766543    2 5888777665543

This protein is a part of the Major Facilitator Superfamily (Pfam family pfam07690). Member of this family are found in a number of proteobacterial genomes, but only in the context of having genes for 4-hydroxyphenylacetate (4-HPA) degradation. The protein is characterized by Prieto, et al. (PubMed:9315705) as 4-hydroxyphenylacetate permease in E. coli, where 3-HPA and 3,4-dihydroxyphenylacetate are shown to competitively inhibit 4-HPA transport and therefore also interact specificially.

>PF06779 DUF1228: Protein of unknown function (DUF1228); InterPro: IPR010645 This entry represents the N terminus of several putative bacterial membrane proteins, which may be sugar transporters

Probab=81.59  E-value=10  Score=23.59  Aligned_cols=62  Identities=18%  Similarity=0.131  Sum_probs=37.2

Q ss_pred             chhHHHHHHhhc-CcchhHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHH
Q psy15865          5 LVLVLTYVAEIT-QPHLRGMLSATASMTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         5 ~~~~~~~i~E~~-~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      .+..|..+.|.. ....-|+..+.+.+++.+|.+++..+......|..+.++.+.+++.++.+
T Consensus        12 TplLP~M~~~~~ls~~~ag~lasaNy~GYL~GAl~~~~~~~~~~~~~~~~~~l~~~~~~~~~m   74 (85)
T PF06779_consen   12 TPLLPLMQADGGLSLSQAGWLASANYLGYLVGALLASRLPRHSRPRRLLRAGLLLTVLSTAAM   74 (85)
T ss_pred             HhHhHHHHHhcCCCHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHH
Confidence            456677777764 44555666666666666666665544444455566666666666655444

Note that many members are hypothetical proteins.

>TIGR00792 gph sugar (Glycoside-Pentoside-Hexuronide) transporter

Probab=81.10  E-value=7.9  Score=30.61  Aligned_cols=41  Identities=20%  Similarity=0.233  Sum_probs=28.5

Q ss_pred             cchhHHHHHHhhcC-------cchhHHHHHHHHHHHHHHHHHHHHhhh
Q psy15865          4 PLVLVLTYVAEITQ-------PHLRGMLSATASMTTIFGTVSQLFLGS   44 (156)
Q Consensus         4 ~~~~~~~~i~E~~~-------~~~Rg~~~~~~~~~~~~G~~l~~~~~~   44 (156)
                      ..+....+++|..+       .+.+|...++.+....+|..++..+..
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~G~~~~~~~~~~~~g~~lg~~i~g  375 (437)
T TIGR00792       328 VTGLVWALVADTVDYGEWKTGVRAEGLVYSVRTFVRKLGQALAGFLVG  375 (437)
T ss_pred             HHHHHHHHHhhhhhhhhhhcCccchHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34556667777764       556788888888877777777665543

GPH:cation symporters catalyze uptake of sugars in symport with a monovalent cation (H+ or Na+). Members of this family includes transporters for melibiose, lactose, raffinose, glucuronides, pentosides and isoprimeverose. Mutants of two groups of these symporters (the melibiose permeases of enteric bacteria, and the lactose permease of Streptococcus thermophilus) have been isolated in which altered cation specificity is observed or in which sugar transport is uncoupled from cation symport (i.e., uniport is catalyzed). The various members of the family can use Na+, H+ or Li, Na+ or Li+, H+ or Li+, or only H+ as the symported cation. All of these proteins possess twelve putative transmembrane a-helical spanners.

>TIGR00889 2A0110 nucleoside transporter

Probab=80.36  E-value=4.3  Score=32.47  Aligned_cols=44  Identities=14%  Similarity=-0.025  Sum_probs=24.6

Q ss_pred             HHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHHhhccCChH
Q psy15865         30 MTTIFGTVSQLFLGSFLHWRSAAILNLLFPILALCALYFIPESPH   74 (156)
Q Consensus        30 ~~~~~G~~l~~~~~~~~~Wr~~~~~~~~~~~~~~~~~~~lpESp~   74 (156)
                      +++.+|.+++..++....|+. |++.++..++.++..+++||+|+
T Consensus       141 lG~~ig~~l~g~l~~~~~~~~-f~~~~~~~~~~~~~~~~~~e~~~  184 (418)
T TIGR00889       141 IGFIAAMWAVSLLDIELSNIQ-LYITAGSSALLGVFALTLPDIPV  184 (418)
T ss_pred             HHHHHHHHHHHHhcccchhHH-HHHHHHHHHHHHHHHhcCCCCCC
Confidence            455556655554433334554 44555555555455667899873

This family of proteins transports nucleosides at a high affinity. The transport mechanism is driven by proton motive force. This family includes nucleoside permease NupG and xanthosine permease from E.Coli.

---

Homologous Structure Templates

Structure Templates Detected by BLAST

Original result of BLAST against Protein Data Bank

No homologous structure with e-value below 0.005

Structure Templates Detected by RPS-BLAST

Original result of RPS-BLAST against PDB70 database

No hit with e-value below 0.005

Structure Templates Detected by HHsearch

Original result of HHsearch against PDB70 database

ID	Length	Definition	Probability
Query	156
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	99.49
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	98.15
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	98.11
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	97.92
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	97.66
4gc0_A	491	D-xylose-proton symporter; MFS, transport protein;	97.38
2xut_A	524	Proton/peptide symporter family protein; transport	97.25
1pw4_A	451	Glycerol-3-phosphate transporter; transmembrane, i	96.73
2cfq_A	417	Lactose permease; transport, transport mechanism,	95.96
4aps_A	491	DI-OR tripeptide H+ symporter; transport protein,	95.84
2xut_A	524	Proton/peptide symporter family protein; transport	94.21
3o7q_A	438	L-fucose-proton symporter; transporter, multi-PASS	89.58
2cfq_A	417	Lactose permease; transport, transport mechanism,	87.67
2gfp_A	375	EMRD, multidrug resistance protein D; membrane pro	85.45

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=99.49  E-value=1.1e-13  Score=109.59  Aligned_cols=90  Identities=28%  Similarity=0.466  Sum_probs=79.9

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh------------hhHHHHHHHHHHHHHHHHHHHhhc
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF------------LHWRSAAILNLLFPILALCALYFI   69 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~------------~~Wr~~~~~~~~~~~~~~~~~~~l   69 (156)
                      |+..+++++|++|++|++.|++..++.+.++.+|.++++++++.            ..||+++.+..+++++.++.++++
T Consensus       141 G~~~~~~~~~i~E~~p~~~rg~~~~~~~~~~~~g~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  220 (491)
T 4gc0_A          141 GLASMLSPMYIAELAPAHIRGKLVSFNQFAIIFGQLLVYCVNYFIARSGDASWLNTDGWRYMFASECIPALLFLMLLYTV  220 (491)
T ss_dssp             HHHHHHHHHHHHTTSCGGGHHHHHHHHHHHHHHHHHHHHHHHHHHHTTSCTTTTTTTHHHHHHHTTHHHHHHHHHHGGGS
T ss_pred             HHHHHHHHHHHHhhCCHHhhhhhHHhhhhhhhhhhhhhhhcchhhccccccccccchhhHHHhhhhhhhhhhhhhhhhcC
Confidence            56788999999999999999999999999999999998887653            379999999999999999999999


Q ss_pred             cCChHHHHHhcChhhHhHHHHH
Q psy15865         70 PESPHWLISKYLPIGLSALATS   91 (156)
Q Consensus        70 pESp~~l~~~~~~~~a~~~l~~   91 (156)
                      ||||+|+..+++.+++.+.+++
T Consensus       221 peSp~~L~~~~~~~~a~~~l~~  242 (491)
T 4gc0_A          221 PESPRWLMSRGKQEQAEGILRK  242 (491)
T ss_dssp             CCCHHHHHHTTCHHHHHHHHHH
T ss_pred             CCChHHHHHcCchhHHHHhHHH
Confidence            9999999999999995544443

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=98.15  E-value=9.4e-06  Score=62.82  Aligned_cols=72  Identities=11%  Similarity=0.102  Sum_probs=56.7

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhhh------------------------------HHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFLH------------------------------WRSAA   52 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~~------------------------------Wr~~~   52 (156)
                      ...+....++.|+.|+++|++..++.+.+..+|.++++.++....                              ||+.+
T Consensus       133 ~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~w~~~~  212 (438)
T 3o7q_A          133 CLETAANPFVTVLGPESSGHFRLNLAQTFNSFGAIIAVVFGQSLILSNVPHQSQDVLDKMSPEQLSAYKHSLVLSVQTPY  212 (438)
T ss_dssp             HHHHHHHHHHHHSSCSTTHHHHHHHHHHHHHHHHHHHHHHTTHHHHTSSCCCCHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             HhhhhHHHHHHHHcCchhHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccccccccccccCCcchhhhhhhhhhhhHHHHH
Confidence            445678889999999999999999999999999999988876543                              99999


Q ss_pred             HHHHHHHHHHHHHH--hhccCChH
Q psy15865         53 ILNLLFPILALCAL--YFIPESPH   74 (156)
Q Consensus        53 ~~~~~~~~~~~~~~--~~lpESp~   74 (156)
                      ++.++..++..+..  ...||+++
T Consensus       213 ~~~~~~~~~~~~~~~~~~~p~~~~  236 (438)
T 3o7q_A          213 MIIVAIVLLVALLIMLTKFPALQS  236 (438)
T ss_dssp             HHHHHHHHHHHHHHHHCCCCCCTT
T ss_pred             HHHHHHHHHHHHHHHHHcCCcccc
Confidence            87776655543333  34688765

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=98.11  E-value=1.3e-06  Score=67.91  Aligned_cols=73  Identities=15%  Similarity=0.150  Sum_probs=60.8

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILA-LCALYFIPESPHW   75 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~-~~~~~~lpESp~~   75 (156)
                      ...+....++.|++|+++|++..++.+.+..+|.++++.++..    .+ ||+.|++.++++++. ++..+++||+|+.
T Consensus       135 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~w~~~f~~~~~~~~~~~~~~~~~~~~~~~~  213 (451)
T 1pw4_A          135 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  213 (451)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             hccchHHHHHHHHCCchhhhHHHHHHHHHHHHHHHHHHHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHhhccCCHhh
Confidence            3567788899999999999999999999999999888877653    46 999999999887665 4455778999864

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=97.92  E-value=6.3e-06  Score=62.76  Aligned_cols=72  Identities=13%  Similarity=0.192  Sum_probs=60.0

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHH-HHhhccCChHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALC-ALYFIPESPHW   75 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~-~~~~lpESp~~   75 (156)
                      ..+....++.|+.|+++|++..++.+.+..+|.++++.++..    .+||+.+.+.++..++..+ ..+++||+++.
T Consensus       105 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~~~~~~~~~l~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  181 (375)
T 2gfp_A          105 GGVMARTLPRDLYERTQLRHANSLLNMGILVSPLLAPLIGGLLDTMWNWRACYLFLLVLCAGVTFSMARWMPETRPV  181 (375)
T ss_dssp             HHHHHHHHHHHHHHTSSCCSHHHHHHHHHHHHHHHHHHHHHHSSCHHHHHHHHHHHHHHHHHHHCCCCCSSCCCSTT
T ss_pred             hhhhHHHHHHHHCCHHHHHHHHHHHHHHHHHHHHhhHHHHHHHHHhccHHHHHHHHHHHHHHHHHHHHHHCcccCCC
Confidence            456778899999999999999999999999999998887664    4899999998888776655 55678998764

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=97.66  E-value=7.4e-05  Score=58.82  Aligned_cols=64  Identities=14%  Similarity=-0.002  Sum_probs=49.9

Q ss_pred             ccchhHHHHHHhhcCcch--hHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHL--RGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~--Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      +..+....+++|++|++.  |+...++.+....+|.++++.++..    .+||+.|++.++..++.++..
T Consensus       124 ~~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~g~~~~~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~  193 (491)
T 4aps_A          124 FLKPNVSTLVGTLYDEHDRRRDAGFSIFVFGINLGAFIAPLIVGAAQEAAGYHVAFSLAAIGMFIGLLVY  193 (491)
T ss_dssp             HHHHHHHHHHHHHSSSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSCHHHHHHHHHHHHHHHHHHH
T ss_pred             hccchHHHHHHHHcCcccccceeeehHHHHHHHHHHHHHHHHHHHHHhhhhHHHHHHHHHHHHHHHHHHH
Confidence            456788899999999988  7777777888888888888777654    589999999877766554443

>4gc0_A D-xylose-proton symporter; MFS, transport protein; HET: 6BG BNG; 2.60A {Escherichia coli} PDB: 4gbz_A* 4gby_A*

Probab=97.38  E-value=0.00046  Score=54.19  Aligned_cols=68  Identities=19%  Similarity=0.158  Sum_probs=46.2

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----------hhHHHHHHHHHHHHHHH-HHHHhhccCC
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----------LHWRSAAILNLLFPILA-LCALYFIPES   72 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----------~~Wr~~~~~~~~~~~~~-~~~~~~lpES   72 (156)
                      .++.++|.+|+.|.+.|+...++......+|.+++..+...          .++...+++.+..+++. ++.++++|||
T Consensus       388 ~~~~~~~~~E~fPt~~R~~~~g~~~~~~~~~~~i~~~~~p~l~~~~~~~~~~~~~~~~~i~~~~~~~~~i~~~~~~PET  466 (491)
T 4gc0_A          388 GPVCWVLLSEIFPNAIRGKALAIAVAAQWLANYFVSWTFPMMDKNSWLVAHFHNGFSYWIYGCMGVLAALFMWKFVPET  466 (491)
T ss_dssp             THHHHHHHHHSSCTTTHHHHHHHHHHHHHHHHHHHHTHHHHHCHHHHHHHHHTTCHHHHHHHHHHHHHHHHHHHHCCCC
T ss_pred             HHHHHHHHHHhCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhhhhhhHHHHHHHHHHHHHHHHHHheecCC
Confidence            45677899999999999999998777666666665433211          23444555655555554 4455789998

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=97.25  E-value=0.001  Score=52.69  Aligned_cols=66  Identities=11%  Similarity=0.066  Sum_probs=51.6

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHH---HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHh
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSAT---ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCALY   67 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~---~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~   67 (156)
                      |...+....++.|++|++.|+...+.   .+.+..+|.++++.++..    .+||+.|++.++..++.++..+
T Consensus       124 ~~~~~~~~~~~~~~~~~~~r~~~~~~~~~~~~~~~~g~~~g~~~~~~l~~~~g~~~~f~~~~~~~~~~~~~~~  196 (524)
T 2xut_A          124 GGIKPLVSSFMGDQFDQSNKSLAQKAFDMFYFTINFGSFFASLSMPLLLKNFGAAVAFGIPGVLMFVATVFFW  196 (524)
T ss_dssp             HTTHHHHHHHHHHTCSTTTTTHHHHHHHHHHHHHHHHHHHHHHTSTHHHHTSCHHHHHHHHHHHHHHHHHHHH
T ss_pred             cccchhHHHHHHHHcCccchHHHHHHHHHHHHHHHHHHHHHHHHHHHHhccccHHHHHHHHHHHHHHHHHHHH
Confidence            34567888999999999999876666   788888888888877654    4899999998888666555443

>1pw4_A Glycerol-3-phosphate transporter; transmembrane, inner membrane, major facilitator superfamily, secondary active membrane transporter; 3.30A {Escherichia coli} SCOP: f.38.1.1

Probab=96.73  E-value=0.0065  Score=46.79  Aligned_cols=65  Identities=17%  Similarity=0.285  Sum_probs=51.0

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHHhh
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFLGSF----LHWRSAAILNLLFPILALCALYF   68 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~~~   68 (156)
                      ..+....++.|..|++.||...++.+....+ |..+++.+...    .+|+..+++.++..++..+..++
T Consensus       363 ~~~~~~~~~~~~~~~~~~g~~~~~~~~~~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~  432 (451)
T 1pw4_A          363 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILLIV  432 (451)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHHHH
T ss_pred             hHHHHHHHHHHHhchhhhhhHHHHHHHHHHHHHHHHHHHHHHHHHHhcCcHHHHHHHHHHHHHHHHHHHH
Confidence            3455668899999999999999999888888 88888777554    37899988888877766555444

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=95.96  E-value=0.0064  Score=47.04  Aligned_cols=69  Identities=7%  Similarity=0.065  Sum_probs=48.0

Q ss_pred             hhHHHHHHhhcCcchhHHHHHH-HHHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCChH
Q psy15865          6 VLVLTYVAEITQPHLRGMLSAT-ASMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPESPH   74 (156)
Q Consensus         6 ~~~~~~i~E~~~~~~Rg~~~~~-~~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpESp~   74 (156)
                      +....++.|..|.+.||...++ .+....+|..+++.++..    .++...|.+.++.+++..+. .++.+|.++
T Consensus       331 ~~~~~~~~~~~p~~~~g~~~g~~~~~~~~lg~~~gp~l~G~l~~~~g~~~~f~~~~~~~l~~~~~~~~~~~~~~~  405 (417)
T 2cfq_A          331 VGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGPGP  405 (417)
T ss_dssp             HHHHHHHHHHSCHHHHHHHHHHHHTTTHHHHHHHHTHHHHTHHHHSHHHHHHHHHHHHHHHHHHHHTTSSCCSCT
T ss_pred             HHHHHHHHHHCCHHHHHHHHHHHHHHHHhHHHHHhhhhHHHHHHhcCcHHHHHHHHHHHHHHHHHHHhhhcCCCc
Confidence            3456799999999999998777 466666777776666543    47888888877776665544 344566543

>4aps_A DI-OR tripeptide H+ symporter; transport protein, peptide transport, major facilitator SUPE transporter, MFS; 3.30A {Streptococcus thermophilus}

Probab=95.84  E-value=0.01  Score=46.48  Aligned_cols=69  Identities=7%  Similarity=-0.026  Sum_probs=48.5

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhhh---hHHHHHHHHHHHHHHHHHHH-hhccCC
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSFL---HWRSAAILNLLFPILALCAL-YFIPES   72 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~~---~Wr~~~~~~~~~~~~~~~~~-~~lpES   72 (156)
                      ..+....++.|..|++.||...++......+|..+++.+....   ++...+.+.++.+++..+.. ++.++.
T Consensus       403 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~i~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~  475 (491)
T 4aps_A          403 ISPVGLSVTTKLAPKAFNSQMMSMWFLSSSVGSALNAQLVTLYNAKSEVAYFSYFGLGSVVLGIVLVFLSKRI  475 (491)
T ss_dssp             TTTHHHHHHHHHTTTTCSSSSTHHHHHHHHHHHHHHHHHGGGGGGSSTTHHHHHTHHHHHHHHHHHHHC----
T ss_pred             HhHHHHHHHHHhCCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhcccHHHHHHHHHHHHHHHHHHHHHHHHHH
Confidence            3567788999999999999999999999999999988886543   45556666666655544433 334443

>2xut_A Proton/peptide symporter family protein; transport protein, membrane protein, major facilitator super transporter; 3.62A {Shewanella oneidensis}

Probab=94.21  E-value=0.034  Score=43.85  Aligned_cols=41  Identities=10%  Similarity=0.137  Sum_probs=34.0

Q ss_pred             chhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh
Q psy15865          5 LVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF   45 (156)
Q Consensus         5 ~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~   45 (156)
                      .+....++.|..|++.||+..++..+...+|..+++.+...
T Consensus       423 ~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~g~~~g~~~~g~  463 (524)
T 2xut_A          423 SATGLEFAYSQAPKAMKGTIMSFWTLSVTVGNLWVLLANVS  463 (524)
T ss_dssp             HHHHTTTHHHHCCTTCCTTTHHHHGGGHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHhCcHHHHhHHHHHHHHHHHHHHHHHHHHHHH
Confidence            34555678999999999999999999999999888877553

>3o7q_A L-fucose-proton symporter; transporter, multi-PASS membrane protei transport protein; HET: BNG; 3.14A {Escherichia coli} PDB: 3o7p_A*

Probab=89.58  E-value=0.67  Score=35.23  Aligned_cols=65  Identities=12%  Similarity=0.002  Sum_probs=41.9

Q ss_pred             CccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hh-HHHHHHHHHHHHHHHHHHHhh
Q psy15865          2 AAPLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LH-WRSAAILNLLFPILALCALYF   68 (156)
Q Consensus         2 G~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~-Wr~~~~~~~~~~~~~~~~~~~   68 (156)
                      ++..+....+..|..|++ |+...++.. ...+|..+++.+...    .+ ++..+++..+..++.+++.++
T Consensus       362 ~~~~~~~~~~~~~~~~~~-~~~~~~~~~-~~~~g~~~~~~~~g~l~~~~g~~~~~~~~~~~~~~~~~~~~~~  431 (438)
T 3o7q_A          362 SIQYPTIFSLGIKNLGQD-TKYGSSFIV-MTIIGGGIVTPVMGFVSDAAGNIPTAELIPALCFAVIFIFARF  431 (438)
T ss_dssp             TTHHHHHHHHHHSSCGGG-HHHHHHHHH-HTTHHHHHHHHHHHHHHHHHTSSGGGGHHHHHHHHHHHHHHTT
T ss_pred             HHHHHHHHHHHHhhcccc-ccchhhHHH-HHHHHHHHHHHHHHHHHHHhcchHHHHHHHHHHHHHHHHHHHH
Confidence            345677788889999876 777777665 344677776666543    35 888777766555444444333

>2cfq_A Lactose permease; transport, transport mechanism, lactose/H+ symport, sugar transport, transmembrane, formylation; 2.95A {Escherichia coli} SCOP: f.38.1.2 PDB: 1pv7_A* 1pv6_A 2cfp_A 2v8n_A 2y5y_A*

Probab=87.67  E-value=0.025  Score=43.67  Aligned_cols=53  Identities=11%  Similarity=0.048  Sum_probs=30.2

Q ss_pred             hhHHHHHHHHHHHHHHHHHHHHhhhh---hhHHHHHHHHHHHHHHHHHHHhhc-cCC
Q psy15865         20 LRGMLSATASMTTIFGTVSQLFLGSF---LHWRSAAILNLLFPILALCALYFI-PES   72 (156)
Q Consensus        20 ~Rg~~~~~~~~~~~~G~~l~~~~~~~---~~Wr~~~~~~~~~~~~~~~~~~~l-pES   72 (156)
                      .|+...+....+..+|..+++.++..   .+||+.|++.++++++.++..++. ||+
T Consensus       135 ~~~~~~g~~~~~~~~g~~~~~~l~~~l~~~~~~~~f~~~~~~~~~~~~~~~~~~~~~  191 (417)
T 2cfq_A          135 RSNFEFGRARMFGCVGWALGASIVGIMFTINNQFVFWLGSGCALILAVLLFFAKTDA  191 (417)
T ss_dssp             HHTCCHHHHSSSTTTHHHHHHHHHHHHHHHCSHHHHTTTTTTTTTHHHHSCSSCCCC
T ss_pred             hcccchHHHHHHHHHHHHHHHHHHHHHHHhchhHHHHHHHHHHHHHHHHHHHcCccc
Confidence            34443444444445555555544432   479999998887766555554444 454

>2gfp_A EMRD, multidrug resistance protein D; membrane protein, multidrug transporter; 3.50A {Escherichia coli}

Probab=85.45  E-value=0.37  Score=36.00  Aligned_cols=51  Identities=14%  Similarity=0.001  Sum_probs=38.3

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh----hhHHHHHHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF----LHWRSAAIL   54 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~----~~Wr~~~~~   54 (156)
                      ...+....++.|..| +.||+..++.+....+|..+++.+...    .+|+..+.+
T Consensus       307 ~~~~~~~~~~~~~~p-~~~g~~~g~~~~~~~~g~~~~~~~~g~l~~~~~~~~~~~~  361 (375)
T 2gfp_A          307 MLFPLATSGAMEPFP-FLAGTAGALVGGLQNIGSGVLASLSAMLPQTGQGSLGLLM  361 (375)
T ss_dssp             HTSSTTHHHHHTHHH-HHHHHHHHHHHHHHHHHHHCCSTTCTHHHHHHHHHHHHHH
T ss_pred             HhhHHHHHHHHHhCC-cccchHHHHHHHHHHHHHHHHHHHHHHHhcCCcccHHHHH
Confidence            345667788999998 899999999998888888887666543    245555544

---

Homologous Structure Domains

Structure Domains Detected by RPS-BLAST

Original result of RPS-BLAST against SCOP70(version1.75) database

No hit with e-value below 0.005

Homologous Domains Detected by HHsearch

Original result of HHsearch against SCOP70(version1.75) database

ID	Length	Definition	Probability
Query	156
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	97.79
d1pv7a_	417	Lactose permease {Escherichia coli [TaxId: 562]}	97.32
d1pw4a_	447	Glycerol-3-phosphate transporter {Escherichia coli	96.17

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=97.79  E-value=5.2e-06  Score=62.16  Aligned_cols=73  Identities=15%  Similarity=0.124  Sum_probs=57.6

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHHHHHHHHHHHHHHHhhhh-----hhHHHHHHHHHHHHHHH-HHHHhhccCChHH
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATASMTTIFGTVSQLFLGSF-----LHWRSAAILNLLFPILA-LCALYFIPESPHW   75 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~G~~l~~~~~~~-----~~Wr~~~~~~~~~~~~~-~~~~~~lpESp~~   75 (156)
                      ...+....+++|+.|+++|++..++.+.+..+|.++++.++..     .+||+.+++.+++.++. ++.+++++|+|+.
T Consensus       132 ~~~~~~~~~i~~~~~~~~r~~~~~~~~~~~~~g~~i~~~~~~~~~~~~~~w~~~~~~~~~~~~~~~~~~~~~~~~~~~~  210 (447)
T d1pw4a_         132 MGWPPCGRTMVHWWSQKERGGIVSVWNCAHNVGGGIPPLLFLLGMAWFNDWHAALYMPAFCAILVALFAFAMMRDTPQS  210 (447)
T ss_dssp             HTHHHHHHHHHTTCTTTHHHHHHHHHHHHHHHHHTSHHHHHHHHHHHTCCSTTCTHHHHHHHHHHHHHHHHHCCCSSTT
T ss_pred             hhhhHHHHHHHHHHHhhcccccccccccccchhhhhhhhhhhhHhhhhhcccccchhhhhhHHHHHHHHHHhcccchhh
Confidence            4567788899999999999999999999999988877665442     48999999988876655 4455667777753

>d1pv7a_ f.38.1.2 (A:) Lactose permease {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: LacY-like proton/sugar symporter
domain: Lactose permease
species: Escherichia coli [TaxId: 562]

Probab=97.32  E-value=0.00016  Score=52.36  Aligned_cols=70  Identities=9%  Similarity=0.087  Sum_probs=49.7

Q ss_pred             ccchhHHHHHHhhcCcchhHHHHHHH-HHHHHHHHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHH-HhhccCC
Q psy15865          3 APLVLVLTYVAEITQPHLRGMLSATA-SMTTIFGTVSQLFLGSF----LHWRSAAILNLLFPILALCA-LYFIPES   72 (156)
Q Consensus         3 ~~~~~~~~~i~E~~~~~~Rg~~~~~~-~~~~~~G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~-~~~lpES   72 (156)
                      ...+....++.|..|++.||+..++. ++...+|..+++.+...    .+|+..+++.++..++..++ .+.+++.
T Consensus       328 ~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~~g~~i~~~~~G~l~~~~g~~~~~~~~~~~~~~~~~~~~~~l~~~  403 (417)
T d1pv7a_         328 FLLVGCFKYITSQFEVRFSATIYLVCFCFFKQLAMIFMSVLAGNMYESIGFQGAYLVLGLVALGFTLISVFTLSGP  403 (417)
T ss_dssp             HHHHHHHHHHHHHSCGGGHHHHHHHHHTTTHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHHSCCS
T ss_pred             HHHHHHHHHHHHHCCHhHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHCHHHHHHHHHHHHHHHHHHHHHhhcCC
Confidence            34567788999999999999988864 55666777777666543    58999888887776655443 4444433

>d1pw4a_ f.38.1.1 (A:) Glycerol-3-phosphate transporter {Escherichia coli [TaxId: 562]}

class: Membrane and cell surface proteins and peptides
fold: MFS general substrate transporter
superfamily: MFS general substrate transporter
family: Glycerol-3-phosphate transporter
domain: Glycerol-3-phosphate transporter
species: Escherichia coli [TaxId: 562]

Probab=96.17  E-value=0.011  Score=43.37  Aligned_cols=63  Identities=17%  Similarity=0.297  Sum_probs=44.6

Q ss_pred             cchhHHHHHHhhcCcchhHHHHHHHHHHHHH-HHHHHHHhhhh----hhHHHHHHHHHHHHHHHHHHH
Q psy15865          4 PLVLVLTYVAEITQPHLRGMLSATASMTTIF-GTVSQLFLGSF----LHWRSAAILNLLFPILALCAL   66 (156)
Q Consensus         4 ~~~~~~~~i~E~~~~~~Rg~~~~~~~~~~~~-G~~l~~~~~~~----~~Wr~~~~~~~~~~~~~~~~~   66 (156)
                      ..+....++.|..|++.||...++.+....+ |.++++.+...    .+|+..+++..+.+++..++.
T Consensus       360 ~~~~~~~~~~~~~p~~~~g~~~g~~~~~~~~~g~~~~~~~~g~~~~~~g~~~~~~~~~~~~~~~~~~~  427 (447)
T d1pw4a_         360 PVMLIGLHALELAPKKAAGTAAGFTGLFGYLGGSVAASAIVGYTVDFFGWDGGFMVMIGGSILAVILL  427 (447)
T ss_dssp             HHHHHHHHHHHTSCTTHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHSSCSHHHHHHHHHHHHHHHHHH
T ss_pred             HHHHHHHHHHHHcCHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHHhChHHHHHHHHHHHHHHHHHH
Confidence            4556678899999999999999987665444 55666655432    588988888777666554443