Conserved Domains and Related Protein Families
Conserved Domains Detected by RPS-BLAST
Original result of RPS-BLAST against CDD database
ID Alignment Graph Length
Definition
E-value Query 124
PRK05218 613
PRK05218, PRK05218, heat shock protein 90; Provisi
2e-48 COG0326 623
COG0326, HtpG, Molecular chaperone, HSP90 family [
9e-40 PTZ00130 814
PTZ00130, PTZ00130, heat shock protein 90; Provisi
4e-28 PTZ00272 701
PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp
3e-25 PRK14083 601
PRK14083, PRK14083, HSP90 family protein; Provisio
5e-14 cd00075 103
cd00075, HATPase_c, Histidine kinase-like ATPases;
9e-08 smart00387 111
smart00387, HATPase_c, Histidine kinase-like ATPas
4e-05 pfam02518 111
pfam02518, HATPase_c, Histidine kinase-, DNA gyras
1e-04
>gnl|CDD|235366 PRK05218, PRK05218, heat shock protein 90; Provisional
Back Hide alignment and domain information
Score = 162 bits (413), Expect = 2e-48
Identities = 58/103 (56%), Positives = 77/103 (74%), Gaps = 3/103 (2%)
Query: 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHD 81
E EFQAE + LL ++ SLYS+KE+F+RELISNASDA++KLR+ L++ P +
Sbjct: 2 AMETGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTD--PALYE-G 58
Query: 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
G L+IRIS DK+ R LTI D+GIGMT+EE+ NLGTIA+SG+
Sbjct: 59 DGDLKIRISFDKEARTLTISDNGIGMTREEVIENLGTIAKSGT 101
>gnl|CDD|223403 COG0326, HtpG, Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Back Show alignment and domain information
Score = 139 bits (352), Expect = 9e-40
Identities = 56/101 (55%), Positives = 73/101 (72%), Gaps = 3/101 (2%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
E FQAE + LLD++ SLYS+KE+F+RELISNASDA++KLR+ + P +
Sbjct: 5 ETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRF--EALSDPELGE-GDS 61
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L IRIS DK N+ LTI D+GIGMTK+E+ NLGTIA+SG+
Sbjct: 62 DLRIRISFDKDNKTLTISDNGIGMTKDEVIENLGTIAKSGT 102
>gnl|CDD|185466 PTZ00130, PTZ00130, heat shock protein 90; Provisional
Back Show alignment and domain information
Score = 107 bits (267), Expect = 4e-28
Identities = 57/101 (56%), Positives = 77/101 (76%), Gaps = 3/101 (2%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
E+H++Q E L+DI+ SLY+ KEVF+RELISNA+DALEK+R+ LS+ +
Sbjct: 66 EQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL---GEEK 122
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
KLEIRIS +K+ IL+I D+GIGMTKE+L +NLGTIA+SG+
Sbjct: 123 KLEIRISANKEKNILSITDTGIGMTKEDLINNLGTIAKSGT 163
>gnl|CDD|240341 PTZ00272, PTZ00272, heat shock protein 83 kDa (Hsp83); Provisional
Back Show alignment and domain information
Score = 99.0 bits (246), Expect = 3e-25
Identities = 50/101 (49%), Positives = 72/101 (71%), Gaps = 3/101 (2%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
E FQAE L+ ++ + YS+KE+F+RELISNASDA +K+RY L++ +
Sbjct: 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL---GESP 59
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+L IR+ DK+N+ LT++D+GIGMTK +L +NLGTIARSG+
Sbjct: 60 RLCIRVVPDKENKTLTVEDNGIGMTKADLVNNLGTIARSGT 100
>gnl|CDD|237603 PRK14083, PRK14083, HSP90 family protein; Provisional
Back Show alignment and domain information
Score = 66.5 bits (163), Expect = 5e-14
Identities = 35/98 (35%), Positives = 55/98 (56%), Gaps = 12/98 (12%)
Query: 26 HEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDH-GK 84
H FQ + R ++D++++ LYS V++REL+ NA DA+ R D G+
Sbjct: 3 HRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRA----------LDPTAPGR 52
Query: 85 LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122
+ I + TD L ++D+GIG+T+EE+ L TI RS
Sbjct: 53 IRIEL-TDAGGGTLIVEDNGIGLTEEEVHEFLATIGRS 89
>gnl|CDD|238030 cd00075, HATPase_c, Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Back Show alignment and domain information
Score = 46.5 bits (111), Expect = 9e-08
Identities = 13/75 (17%), Positives = 28/75 (37%), Gaps = 16/75 (21%)
Query: 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109
+ L+SNA T G++ I + D + + ++D+G G+ +
Sbjct: 4 VLLNLLSNAIKH----------------TPEGGGRITISVERDGDHLEIRVEDNGPGIPE 47
Query: 110 EELKSNLGTIARSGS 124
E+L+ +
Sbjct: 48 EDLERIFERFSDGSR 62
>gnl|CDD|214643 smart00387, HATPase_c, Histidine kinase-like ATPases
Back Show alignment and domain information
Score = 39.6 bits (93), Expect = 4e-05
Identities = 13/66 (19%), Positives = 30/66 (45%), Gaps = 13/66 (19%)
Query: 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGM 107
+R+++SN D K + G++ + + D + +T++D+G G+
Sbjct: 3 PDRLRQVLSNLLDNAIKYT-------------PEGGRITVTLERDGDHVEITVEDNGPGI 49
Query: 108 TKEELK 113
E+L+
Sbjct: 50 PPEDLE 55
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases. Length = 111
>gnl|CDD|217081 pfam02518, HATPase_c, Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase
Back Show alignment and domain information
Score = 38.1 bits (89), Expect = 1e-04
Identities = 13/62 (20%), Positives = 28/62 (45%), Gaps = 17/62 (27%)
Query: 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110
+ L+ NA +++ G++E+ + D +T++D+GIG+ E
Sbjct: 10 LSNLLDNA------IKHA-----------PAGGEIEVTLERDGGRLRITVEDNGIGIPPE 52
Query: 111 EL 112
+L
Sbjct: 53 DL 54
This family represents the structurally related ATPase domains of histidine kinase, DNA gyrase B and HSP90. Length = 111
Conserved Domains Detected by HHsearch
Original result of HHsearch against CDD database
ID Alignment Graph Length
Definition
Probability Query
124
COG0326 623
HtpG Molecular chaperone, HSP90 family [Posttransl
99.91 PTZ00272 701
heat shock protein 83 kDa (Hsp83); Provisional
99.87 PTZ00130 814
heat shock protein 90; Provisional
99.86 KOG0019|consensus 656
99.84 PRK05218 613
heat shock protein 90; Provisional
99.82 KOG0020|consensus 785
99.81 PRK14083 601
HSP90 family protein; Provisional
99.73 PF13589 137
HATPase_c_3: Histidine kinase-, DNA gyrase B-, and
98.93 COG4191 603
Signal transduction histidine kinase regulating C4
98.76 PF02518 111
HATPase_c: Histidine kinase-, DNA gyrase B-, and H
98.69 COG1389 538
DNA topoisomerase VI, subunit B [DNA replication,
98.67 TIGR02938 494
nifL_nitrog nitrogen fixation negative regulator N
98.42 PRK11006 430
phoR phosphate regulon sensor protein; Provisional
98.4 COG2205 890
KdpD Osmosensitive K+ channel histidine kinase [Si
98.39 PRK10755 356
sensor protein BasS/PmrB; Provisional
98.38 TIGR01386 457
cztS_silS_copS heavy metal sensor kinase. Members
98.37 COG5002 459
VicK Signal transduction histidine kinase [Signal
98.37 COG0642 336
BaeS Signal transduction histidine kinase [Signal
98.35 PRK09303 380
adaptive-response sensory kinase; Validated
98.35 TIGR02916 679
PEP_his_kin putative PEP-CTERM system histidine ki
98.33 PRK10549 466
signal transduction histidine-protein kinase BaeS;
98.33 COG3290 537
CitA Signal transduction histidine kinase regulati
98.32 PRK10364 457
sensor protein ZraS; Provisional
98.3 PRK11086 542
sensory histidine kinase DcuS; Provisional
98.3 PRK15347 921
two component system sensor kinase SsrA; Provision
98.23 PRK10490 895
sensor protein KdpD; Provisional
98.17 PRK04184 535
DNA topoisomerase VI subunit B; Validated
98.16 PRK10604 433
sensor protein RstB; Provisional
98.15 PRK14868 795
DNA topoisomerase VI subunit B; Provisional
98.14 PRK13837 828
two-component VirA-like sensor kinase; Provisional
98.14 PRK11100 475
sensory histidine kinase CreC; Provisional
98.14 TIGR00585 312
mutl DNA mismatch repair protein MutL. All protein
98.11 TIGR02956 968
TMAO_torS TMAO reductase sytem sensor TorS. This p
98.11 TIGR03785 703
marine_sort_HK proteobacterial dedicated sortase s
98.1 PRK11091 779
aerobic respiration control sensor protein ArcB; P
98.08 PRK11466 914
hybrid sensory histidine kinase TorS; Provisional
98.07 PRK11360 607
sensory histidine kinase AtoS; Provisional
98.05 PRK15053 545
dpiB sensor histidine kinase DpiB; Provisional
98.05 PRK10618 894
phosphotransfer intermediate protein in two-compon
98.05 PRK09467 435
envZ osmolarity sensor protein; Provisional
98.05 PRK09470 461
cpxA two-component sensor protein; Provisional
98.04 TIGR01052 488
top6b DNA topoisomerase VI, B subunit. This model
98.04 TIGR02966 333
phoR_proteo phosphate regulon sensor kinase PhoR.
98.01 PRK10841 924
hybrid sensory kinase in two-component regulatory
97.98 PRK09835 482
sensor kinase CusS; Provisional
97.98 PRK13560 807
hypothetical protein; Provisional
97.98 COG0323 638
MutL DNA mismatch repair enzyme (predicted ATPase)
97.95 COG3920 221
Signal transduction histidine kinase [Signal trans
97.93 PRK10815 485
sensor protein PhoQ; Provisional
97.89 PRK00095 617
mutL DNA mismatch repair protein; Reviewed
97.87 PRK11073 348
glnL nitrogen regulation protein NR(II); Provision
97.78 PRK13557 540
histidine kinase; Provisional
97.78 PRK14867 659
DNA topoisomerase VI subunit B; Provisional
97.77 smart00387 111
HATPase_c Histidine kinase-like ATPases. Histidine
97.73 PRK04069 161
serine-protein kinase RsbW; Provisional
97.7 PRK11107 919
hybrid sensory histidine kinase BarA; Provisional
97.69 PRK10337 449
sensor protein QseC; Provisional
97.68 cd00075 103
HATPase_c Histidine kinase-like ATPases; This fami
97.62 PRK10547 670
chemotaxis protein CheA; Provisional
97.62 PRK11644 495
sensory histidine kinase UhpB; Provisional
97.58 COG2972 456
Predicted signal transduction protein with a C-ter
97.57 COG5000 712
NtrY Signal transduction histidine kinase involved
97.55 PRK10600 569
nitrate/nitrite sensor protein NarX; Provisional
97.51 COG3852 363
NtrB Signal transduction histidine kinase, nitroge
97.49 PRK05559 631
DNA topoisomerase IV subunit B; Reviewed
97.48 PRK09959 1197
hybrid sensory histidine kinase in two-component r
97.44 TIGR01924 159
rsbW_low_gc serine-protein kinase RsbW. This model
97.38 TIGR01925 137
spIIAB anti-sigma F factor. This model describes t
97.32 COG4251 750
Bacteriophytochrome (light-regulated signal transd
97.28 COG0643 716
CheA Chemotaxis protein histidine kinase and relat
97.27 PRK10935 565
nitrate/nitrite sensor protein NarQ; Provisional
97.21 PF13581 125
HATPase_c_2: Histidine kinase-like ATPase domain
97.18 COG3850 574
NarQ Signal transduction histidine kinase, nitrate
97.08 PRK03660 146
anti-sigma F factor; Provisional
97.06 PRK13559 361
hypothetical protein; Provisional
96.99 COG4585 365
Signal transduction histidine kinase [Signal trans
96.94 COG4192 673
Signal transduction histidine kinase regulating ph
96.9 smart00433 594
TOP2c TopoisomeraseII. Eukaryotic DNA topoisomeras
96.81 PRK05644 638
gyrB DNA gyrase subunit B; Validated
96.62 TIGR01055 625
parE_Gneg DNA topoisomerase IV, B subunit, proteob
96.45 TIGR01059 654
gyrB DNA gyrase, B subunit. This model describes t
96.39 KOG0787|consensus 414
96.21 COG2172 146
RsbW Anti-sigma regulatory factor (Ser/Thr protein
96.06 PRK14939 756
gyrB DNA gyrase subunit B; Provisional
95.71 COG3275 557
LytS Putative regulator of cell autolysis [Signal
95.22 COG3851 497
UhpB Signal transduction histidine kinase, glucose
94.63 TIGR01058 637
parE_Gpos DNA topoisomerase IV, B subunit, Gram-po
94.41 KOG1978|consensus 672
93.47 KOG1977|consensus 1142
93.4 PF14501 100
HATPase_c_5: GHKL domain
92.57 PLN03128 1135
DNA topoisomerase 2; Provisional
92.1 PLN03237 1465
DNA topoisomerase 2; Provisional
91.83 PTZ00108 1388
DNA topoisomerase 2-like protein; Provisional
91.53 PHA02569 602
39 DNA topoisomerase II large subunit; Provisional
91.15 COG4564 459
Signal transduction histidine kinase [Signal trans
90.43 PTZ00109 903
DNA gyrase subunit b; Provisional
90.41 KOG1979|consensus 694
89.92 COG0187 635
GyrB Type IIA topoisomerase (DNA gyrase/topo II, t
89.58 COG5381 184
Uncharacterized protein conserved in bacteria [Fun
81.94
>COG0326 HtpG Molecular chaperone, HSP90 family [Posttranslational modification, protein turnover, chaperones]
Back Hide alignment and domain information
Probab=99.91 E-value=8.8e-25 Score=188.20 Aligned_cols=99 Identities=58% Similarity=0.842 Sum_probs=91.2
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.++..||+++.+++++|++.+|++++||+||||+||.|||.|+||..+..+... ...+.++|++..++++.+|+|+|
T Consensus 4 ~e~~~Fq~ev~~ll~lmihSlYSnKeIFLRELISNAsDAidKlr~~al~~~~~~---~~~~~~~I~i~~Dk~~kTLtI~D 80 (623)
T COG0326 4 QETRGFQAEVKQLLDLMIHSLYSNKEIFLRELISNASDAIDKLRFEALSDPELG---EGDSDLRIRISFDKDNKTLTISD 80 (623)
T ss_pred hhhhhhhHHHHHHHHHHHHhccCCcHHHHHHHHhhhHHHHHHHHHHhccCcccc---CCCCCceEEEEEcccCCEEEEEe
Confidence 467889999999999999999999999999999999999999999988766543 34568999999999999999999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|||||+++++.++|||||+||+
T Consensus 81 NGIGMT~~Ev~~~LgTIAkSgT 102 (623)
T COG0326 81 NGIGMTKDEVIENLGTIAKSGT 102 (623)
T ss_pred CCCCCCHHHHHHHHHHhhhccH
Confidence 9999999999999999999996
>PTZ00272 heat shock protein 83 kDa (Hsp83); Provisional
Back Show alignment and domain information
Probab=99.87 E-value=5.4e-22 Score=173.97 Aligned_cols=98 Identities=51% Similarity=0.831 Sum_probs=88.2
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
+++.||+|+.++++++.+++|+++.||+|||||||.|||.++|+..+..++.. ...+.+.|++..+++..+|+|.||
T Consensus 3 e~~~Fqae~~~Ll~lli~slYs~~~iflRELIsNA~DA~~k~r~~~l~~~~~~---~~~~~~~I~i~~d~~~~~L~I~Dn 79 (701)
T PTZ00272 3 ETFAFQAEINQLMSLIINTFYSNKEIFLRELISNASDACDKIRYQSLTDPSVL---GESPRLCIRVVPDKENKTLTVEDN 79 (701)
T ss_pred ceEecHHHHHHHHHHHHhcccCCccHhHHHHHhhHHHHHHHHHHHhcCCchhc---CCCCceEEEEEEcCCCCEEEEEEC
Confidence 67899999999999999999999999999999999999999998876644321 345678999999888899999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 80 GiGMt~edl~~~LgtIa~SGt 100 (701)
T PTZ00272 80 GIGMTKADLVNNLGTIARSGT 100 (701)
T ss_pred CCCCCHHHHHHHhhhhhhcch
Confidence 999999999999999999986
>PTZ00130 heat shock protein 90; Provisional
Back Show alignment and domain information
Probab=99.86 E-value=6.2e-22 Score=175.05 Aligned_cols=98 Identities=58% Similarity=0.903 Sum_probs=88.1
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
+++.||+|+.+++++|.+++|+++.||+||||+||.|||.++||..+...+.. .....+.|+|..+.+..+|+|.||
T Consensus 66 e~~~FQaEv~~Lldiii~sLYS~keIFLRELISNAsDAldKlr~~~lt~~~~~---~~~~~~~I~I~~D~~~~tLtI~Dn 142 (814)
T PTZ00130 66 EQHQYQTEVTRLMDIIVNSLYTQKEVFLRELISNAADALEKIRFLSLSDESVL---GEEKKLEIRISANKEKNILSITDT 142 (814)
T ss_pred ceeehHHHHHHHHHHHhhccCCCCCceeehHhhhHHHHHHHHHHHHcCCchhc---CCCCCceEEEEECCCCCEEEEEEC
Confidence 78999999999999999999999999999999999999999999887654322 344578888888888899999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 143 GIGMT~eEl~~nLgTIA~Sgt 163 (814)
T PTZ00130 143 GIGMTKEDLINNLGTIAKSGT 163 (814)
T ss_pred CCCCCHHHHHHHhhhhccccc
Confidence 999999999999999999996
>KOG0019|consensus
Back Show alignment and domain information
Probab=99.84 E-value=3.9e-21 Score=164.63 Aligned_cols=98 Identities=69% Similarity=0.918 Sum_probs=92.4
Q ss_pred ccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEE
Q psy15895 22 NAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQ 101 (124)
Q Consensus 22 ~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~ 101 (124)
..+++.||+++.++++++.+.+|+++.||+||||+||.||+.++||..+..+.. .++.+.|++.++++..+++|+
T Consensus 33 ~~et~~fqaE~~qLm~lii~s~YS~kEvFlRELISNaSDAldKiRy~~lt~~~~-----~~~~l~I~i~~nk~~~tlti~ 107 (656)
T KOG0019|consen 33 PQETHEFQAETNQLMDIVAKSLYSHKEVFLRELISNASDALEKLRYLELKGDEK-----ALPELEIRIITNKDKRTITIQ 107 (656)
T ss_pred cccceehhhhHHhHHHHHHHHhhcchHHHHHhhhccccchHHHHHHHhhcCccc-----cccceeEEeccCCCcceEEEE
Confidence 338999999999999999999999999999999999999999999998877663 388999999999999999999
Q ss_pred EcCCCCCHHHHHhhccccccCCC
Q psy15895 102 DSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 102 DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+|+||+++++.++||+|++|||
T Consensus 108 DtGIGMTk~dLvnnLGTIAkSGt 130 (656)
T KOG0019|consen 108 DTGIGMTKEDLVNNLGTIAKSGS 130 (656)
T ss_pred ecCCCcCHHHHHhhhhhhhhccc
Confidence 99999999999999999999997
>PRK05218 heat shock protein 90; Provisional
Back Show alignment and domain information
Probab=99.82 E-value=4e-20 Score=160.37 Aligned_cols=99 Identities=58% Similarity=0.891 Sum_probs=84.9
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.||+++.+++++|.+.+|+++.+|+|||||||.|||.++|+..+...+.. ......+|+|..+++..+|+|+|
T Consensus 3 ~e~~~Fq~e~~~ll~ll~~~LYs~~~v~lRELiqNA~DA~~k~r~~~~~~~~~~---~~~~~~~I~I~~d~~~~~i~I~D 79 (613)
T PRK05218 3 METGEFQAEVKQLLHLMIHSLYSNKEIFLRELISNASDAIDKLRFEALTDPALY---EGDGDLKIRISFDKEARTLTISD 79 (613)
T ss_pred cceeehhHhHHHHHHHHhhhhcCCchHHHHHHHhCHHHHHHHHHHHhccCcccc---CCCCCcEEEEEEcCCCCeEEEEE
Confidence 478999999999999999999999999999999999999999998776543321 23445677777777777899999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
||+||+++++.++|+++|.||+
T Consensus 80 nG~GMt~eel~~~l~~ia~Sg~ 101 (613)
T PRK05218 80 NGIGMTREEVIENLGTIAKSGT 101 (613)
T ss_pred CCCCCCHHHHHHHHHhhccccc
Confidence 9999999999999999999984
>KOG0020|consensus
Back Show alignment and domain information
Probab=99.81 E-value=2e-20 Score=158.33 Aligned_cols=101 Identities=51% Similarity=0.823 Sum_probs=93.0
Q ss_pred cccceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEE
Q psy15895 21 DNAEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTI 100 (124)
Q Consensus 21 ~~~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I 100 (124)
++.++|.||+++++++.+|.+.+|.++.+|+||||+||.||+.+||...|.+++.. ....++.|+|..++....+.|
T Consensus 70 ~kaeKf~FQaEVnRmMklIINSLY~NKeIFLRELISNASDAlDKIRllaLtd~~~L---~~~~el~ikIK~Dke~klLhi 146 (785)
T KOG0020|consen 70 SKAEKFEFQAEVNRMMKLIINSLYRNKEIFLRELISNASDALDKIRLLALTDKDVL---GETEELEIKIKADKEKKLLHI 146 (785)
T ss_pred HHhhhhhHHHHHHHHHHHHHHHHhhhhHHHHHHHHhhhhhhhhheeeeeccChhHh---CcCcceEEEEeechhhCeeeE
Confidence 45689999999999999999999999999999999999999999999988766543 446789999999999999999
Q ss_pred EEcCCCCCHHHHHhhccccccCCC
Q psy15895 101 QDSGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 101 ~DnGiGM~~e~l~~~l~~i~~S~~ 124 (124)
.|+|+||+.+++.++||+|++||+
T Consensus 147 ~DtGiGMT~edLi~NLGTIAkSGT 170 (785)
T KOG0020|consen 147 TDTGIGMTREDLIKNLGTIAKSGT 170 (785)
T ss_pred ecccCCccHHHHHHhhhhhhcccH
Confidence 999999999999999999999995
>PRK14083 HSP90 family protein; Provisional
Back Show alignment and domain information
Probab=99.73 E-value=8.9e-18 Score=145.59 Aligned_cols=90 Identities=37% Similarity=0.640 Sum_probs=76.7
Q ss_pred eeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcC
Q psy15895 25 KHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSG 104 (124)
Q Consensus 25 ~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnG 104 (124)
.+.||+|+.++++++...+|+++.+|+|||+|||.||+.++++... ...+.|+|.+. +++..+|+|.|||
T Consensus 2 ~~~Fqae~~~ll~ll~~~LYs~~~iflrELiqNA~DA~~~~~~~~~---------~~~~~I~I~~~-d~~~~~l~I~DnG 71 (601)
T PRK14083 2 SHRFQVDLRGVIDLLSRHLYSSPRVYVRELLQNAVDAITARRALDP---------TAPGRIRIELT-DAGGGTLIVEDNG 71 (601)
T ss_pred CccchHhHHHHHHHHHHhhcCCcHHHHHHHHHhHHHHHHhhhccCC---------CCCceEEEEEc-cCCCcEEEEEeCC
Confidence 3679999999999999999999999999999999999988665420 12355566554 7778999999999
Q ss_pred CCCCHHHHHhhccccccCCC
Q psy15895 105 IGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 105 iGM~~e~l~~~l~~i~~S~~ 124 (124)
+||+++++.++|++||+||.
T Consensus 72 iGmt~eel~~~l~~ig~S~k 91 (601)
T PRK14083 72 IGLTEEEVHEFLATIGRSSK 91 (601)
T ss_pred CCCCHHHHHHHHhhhccchh
Confidence 99999999999999999984
>PF13589 HATPase_c_3: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; PDB: 3IED_A 2XCM_B 2JKI_B 3OPD_A 2O1V_B 2GQP_A 2O1W_C 1YT2_A 1TC6_A 2H8M_B
Back Show alignment and domain information
Probab=98.93 E-value=2.7e-09 Score=76.36 Aligned_cols=55 Identities=44% Similarity=0.628 Sum_probs=42.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
...++|||+||+||... .|.|.+..+ .+...|.|.|||.||+.+++.+ ++.+|.|
T Consensus 4 ~~al~ElI~Ns~DA~a~-------------------~I~I~i~~~~~~~~~i~I~DnG~Gm~~~~l~~-~~~~g~s 59 (137)
T PF13589_consen 4 EDALRELIDNSIDAGAT-------------------NIKISIDEDKKGERYIVIEDNGEGMSREDLES-FFRIGRS 59 (137)
T ss_dssp THHHHHHHHHHHHHHHH-------------------HEEEEEEEETTTTTEEEEEESSS---HHHHHH-HTTCHHT
T ss_pred HHHHHHHHHHHHHccCC-------------------EEEEEEEcCCCCCcEEEEEECCcCCCHHHHHH-hccccCC
Confidence 45688899999999865 257777665 5789999999999999999966 7788876
>COG4191 Signal transduction histidine kinase regulating C4-dicarboxylate transport system [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=98.76 E-value=1.6e-08 Score=87.51 Aligned_cols=85 Identities=25% Similarity=0.395 Sum_probs=64.8
Q ss_pred cccceeEehhhhhhhHHHHhhhhcC------------------c----HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCC
Q psy15895 21 DNAEKHEFQAETRMLLDIVAKSLYS------------------D----KEVFIRELISNASDALEKLRYNQLSEVMPFPT 78 (124)
Q Consensus 21 ~~~e~~~f~~ei~~~l~ll~~~~y~------------------~----~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~ea 78 (124)
+......+..-+++.+.++..-+-. + .||.+| ||+||.||+..
T Consensus 451 ~a~~~v~l~~ai~~Al~ll~~R~~~~~~~l~~~~~~~~~~V~~~~iRLeQVLvN-Ll~NALDA~~~-------------- 515 (603)
T COG4191 451 DAAGPVSLREAIEGALELLRGRLRAAGVELELDLPDAPLWVMANEIRLEQVLVN-LLQNALDAMAG-------------- 515 (603)
T ss_pred cccCCccHHHHHHHHHHHHHHhhhccCceeeccCCCCCceeecchhhHHHHHHH-HHHHHHHHhcC--------------
Confidence 3345556666666666666432211 1 367777 99999999975
Q ss_pred CCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 79 DHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 79 m~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
++.+.+.|.+..+++.+.|+|.|||+||+++.+ ..+++|+++
T Consensus 516 -~~~~~i~i~~~~~~~~v~l~VrDnGpGi~~e~~-~~lFePF~T 557 (603)
T COG4191 516 -QEDRRLSIRAQREGGQVVLTVRDNGPGIAPEAL-PHLFEPFFT 557 (603)
T ss_pred -CCCCeeEEEEEecCCeEEEEEccCCCCCCHHHH-HhhcCCccc
Confidence 467899999999999999999999999999999 777777765
>PF02518 HATPase_c: Histidine kinase-, DNA gyrase B-, and HSP90-like ATPase; InterPro: IPR003594 This domain is found in several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases [], heat shock protein HSP90 [, , ], phytochrome-like ATPases and DNA mismatch repair proteins
Back Show alignment and domain information
Probab=98.69 E-value=5.3e-08 Score=65.80 Aligned_cols=51 Identities=31% Similarity=0.609 Sum_probs=41.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
.+.||++|| +++. ++++.|.|.+..+++.+.|+|+|+|.|||++++++.|.
T Consensus 9 il~~ll~Na------~~~~-----------~~~~~I~i~~~~~~~~~~i~i~d~G~gi~~~~l~~~~~ 59 (111)
T PF02518_consen 9 ILSELLDNA------IKHS-----------PEGGKIDITIEEDDDHLSIEISDNGVGIPPEELEKLFE 59 (111)
T ss_dssp HHHHHHHHH------HHHH-----------HHTSEEEEEEEEETTEEEEEEEESSSSTTHHHHHHHCS
T ss_pred HHHHHHHHH------HHHh-----------cCCCEEEEEEEEecCeEEEEEEeccccccccccccchh
Confidence 356699999 5655 23589999999999999999999999999999955443
The fold of this domain consists of two layers, alpha/beta, which contains an 8-stranded mixed beta-sheet. More information about this protein can be found at Protein of the Month: DNA Topoisomerase [].; GO: 0005524 ATP binding; PDB: 3JZ3_A 3DGE_A 2C2A_A 2BU5_A 2BU8_A 2BU6_A 2BU7_A 2BU2_A 2BTZ_A 3K99_D ....
>COG1389 DNA topoisomerase VI, subunit B [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=98.67 E-value=2.9e-08 Score=84.16 Aligned_cols=59 Identities=22% Similarity=0.378 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.++||+.||+|||+.- .--+.|+|+|... +++..+.|.|||+|||.+++++.||++-.|
T Consensus 40 tv~ElV~NSLDA~eea--------------GILPdI~v~I~~~~~d~y~v~veDNGpGIP~e~IPkvFGk~Lyg 99 (538)
T COG1389 40 TVHELVTNSLDACEEA--------------GILPDIKVEIERIGKDHYKVIVEDNGPGIPEEQIPKVFGKMLYG 99 (538)
T ss_pred HHHHHHhcchhhHHhc--------------CCCCceEEEEEecCCceEEEEEecCCCCCChhHhHHHHHHHhcc
Confidence 3799999999999862 1246789999865 789999999999999999999999987654
>TIGR02938 nifL_nitrog nitrogen fixation negative regulator NifL
Back Show alignment and domain information
Probab=98.42 E-value=8.1e-07 Score=71.82 Aligned_cols=56 Identities=18% Similarity=0.226 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||.... + +..+.+.|.+...++.+.|+|.|||+|||++.+ ..+++++
T Consensus 392 l~Nl~~NA------ik~~~~~----~---~~~~~i~i~~~~~~~~~~~~V~D~G~Gi~~~~~-~~iF~~f 447 (494)
T TIGR02938 392 FKALVDNA------IEAMNIK----G---WKRRELSITTALNGDLIVVSILDSGPGIPQDLR-YKVFEPF 447 (494)
T ss_pred HHHHHHHH------HHHhhcc----C---CCcceEEEEEEecCCEEEEEEEeCCCCCCHHHH-HHhcCCC
Confidence 44499999 7776311 0 123567787778889999999999999999998 4555554
NifL is a modulator of the nitrogen fixation positive regulator protein NifA, and is therefore a negative regulator. It binds NifA. NifA and NifL are encoded by adjacent genes.
>PRK11006 phoR phosphate regulon sensor protein; Provisional
Back Show alignment and domain information
Probab=98.40 E-value=1e-06 Score=72.27 Aligned_cols=53 Identities=19% Similarity=0.308 Sum_probs=42.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
++.| |+.|| +||. ++++.+.|.+..+++.+.|+|.|||+||+++.+ +++++++
T Consensus 321 vl~N-Ll~NA------ik~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~f 373 (430)
T PRK11006 321 AISN-LVYNA------VNHT-----------PEGTHITVRWQRVPQGAEFSVEDNGPGIAPEHI-PRLTERF 373 (430)
T ss_pred HHHH-HHHHH------HhcC-----------CCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHhccCc
Confidence 4444 99999 7886 456789999888888999999999999999999 4555544
>COG2205 KdpD Osmosensitive K+ channel histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=98.39 E-value=3.4e-07 Score=82.02 Aligned_cols=56 Identities=25% Similarity=0.522 Sum_probs=49.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.||++| ||.|| .||+ |++.+|.|.+..+.+++.+.|.|+|.|||++++++-|-.+.
T Consensus 777 eQVLiN-LleNA------~Kya-----------p~~s~I~I~~~~~~~~v~~~V~DeGpGIP~~~~~~IFD~F~ 832 (890)
T COG2205 777 EQVLIN-LLENA------LKYA-----------PPGSEIRINAGVERENVVFSVIDEGPGIPEGELERIFDKFY 832 (890)
T ss_pred HHHHHH-HHHHH------HhhC-----------CCCCeEEEEEEEecceEEEEEEeCCCCCChhHHHHhhhhhh
Confidence 478888 99999 8998 78899999999999999999999999999999966554443
>PRK10755 sensor protein BasS/PmrB; Provisional
Back Show alignment and domain information
Probab=98.38 E-value=1.2e-06 Score=69.75 Aligned_cols=48 Identities=25% Similarity=0.544 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+|+.|| +||. +.++.+.|.+..+++.+.|+|+|||+||+++++++.
T Consensus 252 l~nLi~NA------~k~~-----------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~~~~i 299 (356)
T PRK10755 252 LRNLVENA------HRYS-----------PEGSTITIKLSQEDGGAVLAVEDEGPGIDESKCGEL 299 (356)
T ss_pred HHHHHHHH------HhhC-----------CCCCcEEEEEEEcCCEEEEEEEECCCCCCHHHHHHh
Confidence 55689999 8886 456789999988899999999999999999999543
>TIGR01386 cztS_silS_copS heavy metal sensor kinase
Back Show alignment and domain information
Probab=98.37 E-value=1.9e-06 Score=69.67 Aligned_cols=50 Identities=30% Similarity=0.509 Sum_probs=41.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+.+++.|| +||. +.++.|.|.+..+++.+.|+|.|||+|||++.+.+.|-
T Consensus 358 ~~nll~Na------i~~~-----------~~~~~I~i~~~~~~~~~~i~v~D~G~g~~~~~~~~~~~ 407 (457)
T TIGR01386 358 ISNLLSNA------LRHT-----------PDGGTITVRIERRSDEVRVSVSNPGPGIPPEHLSRLFD 407 (457)
T ss_pred HHHHHHHH------HHcC-----------CCCceEEEEEEecCCEEEEEEEeCCCCCCHHHHHHhcc
Confidence 45688888 7876 45678999999999999999999999999999855443
Members of this family contain a sensor histidine kinase domain (Pfam:PF00512) and a domain found in bacterial signal proteins (Pfam:PF00672). This group is separated phylogenetically from related proteins with similar architecture and contains a number of proteins associated with heavy metal resistance efflux systems for copper, silver, cadmium, and/or zinc.
>COG5002 VicK Signal transduction histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=98.37 E-value=5.7e-07 Score=74.72 Aligned_cols=53 Identities=30% Similarity=0.585 Sum_probs=46.7
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGT 118 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~ 118 (124)
||+-| +|.|| +||. |.+|++++.+...+.++.|+|.|.|.|||++++.+.|-.
T Consensus 345 QVldN-ii~NA------~KYs-----------P~Gg~Itv~~~~~~~~v~iSI~D~G~gIPk~d~~~iFdr 397 (459)
T COG5002 345 QVLDN-IISNA------LKYS-----------PDGGRITVSVKQRETWVEISISDQGLGIPKEDLEKIFDR 397 (459)
T ss_pred HHHHH-HHHHH------hhcC-----------CCCCeEEEEEeeeCcEEEEEEccCCCCCCchhHHHHHHH
Confidence 45556 89999 8998 789999999999999999999999999999999776643
>COG0642 BaeS Signal transduction histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=98.35 E-value=1.4e-06 Score=65.51 Aligned_cols=54 Identities=26% Similarity=0.494 Sum_probs=43.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+.+|+.|| +++. + ++.+.|.+...++.+.++|.|||+||+++.+ ++++++++++
T Consensus 233 l~nLi~NA------i~~~-----------~-~~~i~i~~~~~~~~i~i~V~D~G~Gi~~~~~-~~if~~~~~~ 286 (336)
T COG0642 233 LVNLLSNA------IKYT-----------P-GGEITISVRQDDEQVTISVEDTGPGIPEEEL-ERIFEPFFRT 286 (336)
T ss_pred HHHHHHHH------hccC-----------C-CCeEEEEEEecCCeEEEEEEcCCCCCCHHHH-HHhccCeecc
Confidence 34499999 7776 4 6889999988888999999999999999997 6666666543
>PRK09303 adaptive-response sensory kinase; Validated
Back Show alignment and domain information
Probab=98.35 E-value=1.6e-06 Score=70.72 Aligned_cols=54 Identities=24% Similarity=0.459 Sum_probs=41.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE-cCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST-DKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~-~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+++.| |+.|| +||. +.++.+.|.+.. +++.+.|+|.|||+||+++.+ ++++++.
T Consensus 275 qvl~N-Ll~NA------ik~~-----------~~~~~I~i~~~~~~~~~v~i~V~D~G~GI~~~~~-~~iF~pf 329 (380)
T PRK09303 275 QVLLN-LLDNA------IKYT-----------PEGGTITLSMLHRTTQKVQVSICDTGPGIPEEEQ-ERIFEDR 329 (380)
T ss_pred HHHHH-HHHHH------HhcC-----------CCCceEEEEEEecCCCEEEEEEEEcCCCCCHHHH-HHHccCc
Confidence 34555 99999 8887 467888888754 556799999999999999999 4544443
>TIGR02916 PEP_his_kin putative PEP-CTERM system histidine kinase
Back Show alignment and domain information
Probab=98.33 E-value=1.7e-06 Score=75.52 Aligned_cols=56 Identities=25% Similarity=0.389 Sum_probs=46.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+.+|++|| +|+. +.++.+.|++..+++.+.|+|.|||+||+++.+.+++++++.|+
T Consensus 584 l~nLl~NA------ik~~-----------~~~~~I~I~~~~~~~~~~i~V~D~G~Gi~~~~i~~~lF~pf~~~ 639 (679)
T TIGR02916 584 LGHLVQNA------LEAT-----------PGEGRVAIRVERECGAARIEIEDSGCGMSPAFIRERLFKPFDTT 639 (679)
T ss_pred HHHHHHHH------HHhC-----------CCCCcEEEEEEEcCCEEEEEEEEcCCCcChHHHHHhcCCCCCCC
Confidence 44599999 7776 45678999999888999999999999999999668877776553
Members of this protein family have a novel N-terminal domain, a single predicted membrane-spanning helix, and a predicted cystosolic histidine kinase domain. We designate this protein PrsK, and its companion DNA-binding response regulator protein (TIGR02915) PrsR. These predicted signal-transducing proteins appear to enable enhancer-dependent transcriptional activation. The prsK gene is often associated with exopolysaccharide biosynthesis genes.
>PRK10549 signal transduction histidine-protein kinase BaeS; Provisional
Back Show alignment and domain information
Probab=98.33 E-value=1.9e-06 Score=70.37 Aligned_cols=49 Identities=31% Similarity=0.509 Sum_probs=40.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|+.|| +++. ++++.+.|.+..+++.+.|.|.|||+|||++++.+.|
T Consensus 357 l~nll~NA------i~~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~e~~~~lf 405 (466)
T PRK10549 357 FNNLLENS------LRYT-----------DSGGSLHISAEQRDKTLRLTFADSAPGVSDEQLQKLF 405 (466)
T ss_pred HHHHHHHH------HHhC-----------CCCCEEEEEEEEcCCEEEEEEEecCCCcCHHHHHHhc
Confidence 34488888 7775 4678999999999999999999999999999995443
>COG3290 CitA Signal transduction histidine kinase regulating citrate/malate metabolism [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=98.32 E-value=1.4e-06 Score=74.98 Aligned_cols=59 Identities=22% Similarity=0.335 Sum_probs=50.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
.+.+||+||.||... . .+.++|.+.+..+++++.|+|.|||||||++..+ .+++-|.|.
T Consensus 431 IlGNLidNA~eA~~~--~------------~~~k~I~l~i~~~~~~lvieV~D~G~GI~~~~~~-~iFe~G~St 489 (537)
T COG3290 431 ILGNLIDNALEALLA--P------------EENKEIELSLSDRGDELVIEVADTGPGIPPEVRD-KIFEKGVST 489 (537)
T ss_pred HHHHHHHHHHHHhhc--c------------CCCcEEEEEEEecCCEEEEEEeCCCCCCChHHHH-HHHhcCccc
Confidence 467799999999864 1 3568999999999999999999999999999995 777777763
>PRK10364 sensor protein ZraS; Provisional
Back Show alignment and domain information
Probab=98.30 E-value=2.3e-06 Score=70.62 Aligned_cols=53 Identities=23% Similarity=0.315 Sum_probs=42.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+.+|++|| +|+. ..++.+.|.+..+++.+.|+|.|||+||+++.+ +.+++.+.
T Consensus 353 l~NLl~NA------~k~~-----------~~~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~~~ 405 (457)
T PRK10364 353 LLNLYLNA------IQAI-----------GQHGVISVTASESGAGVKISVTDSGKGIAADQL-EAIFTPYF 405 (457)
T ss_pred HHHHHHHH------HHhc-----------CCCCeEEEEEEEeCCeEEEEEEECCCCCCHHHH-HHHhCccc
Confidence 33488999 6775 346789999998888999999999999999999 45555443
>PRK11086 sensory histidine kinase DcuS; Provisional
Back Show alignment and domain information
Probab=98.30 E-value=2.3e-06 Score=70.95 Aligned_cols=56 Identities=20% Similarity=0.270 Sum_probs=43.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
+.+|+.|| +++... +.++.+.|++..+++.+.|+|.|||+||+++++ +.++++++|
T Consensus 438 l~nLl~NA------i~~~~~---------~~~~~I~i~~~~~~~~~~i~V~D~G~gi~~~~~-~~iF~~~~~ 493 (542)
T PRK11086 438 LGNLIENA------LEAVGG---------EEGGEISVSLHYRNGWLHCEVSDDGPGIAPDEI-DAIFDKGYS 493 (542)
T ss_pred HHHHHHHH------HHHhhc---------CCCcEEEEEEEEcCCEEEEEEEECCCCCCHHHH-HHHHhCCCc
Confidence 44599999 555421 346789999998999999999999999999999 555555554
>PRK15347 two component system sensor kinase SsrA; Provisional
Back Show alignment and domain information
Probab=98.23 E-value=3.1e-06 Score=74.89 Aligned_cols=50 Identities=22% Similarity=0.512 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||+ ..|.|.|++..+++.+.|+|+|||+||+++++ +.++++
T Consensus 518 l~NLl~NA------ik~~------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 567 (921)
T PRK15347 518 LVNLLGNA------VKFT------------ETGGIRLRVKRHEQQLCFTVEDTGCGIDIQQQ-QQIFTP 567 (921)
T ss_pred HHHHHHHH------hhcC------------CCCCEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHHhcC
Confidence 33499999 7886 24669999988899999999999999999999 444444
>PRK10490 sensor protein KdpD; Provisional
Back Show alignment and domain information
Probab=98.17 E-value=5.9e-06 Score=74.85 Aligned_cols=55 Identities=20% Similarity=0.312 Sum_probs=44.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+++.| |+.|| +||. +.++.+.|.+..+++.+.|+|.|||+||+++++ +++++++.
T Consensus 781 qVL~N-LL~NA------ik~s-----------~~g~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~-~~IFepF~ 835 (895)
T PRK10490 781 RVLIN-LLENA------VKYA-----------GAQAEIGIDAHVEGERLQLDVWDNGPGIPPGQE-QLIFDKFA 835 (895)
T ss_pred HHHHH-HHHHH------HHhC-----------CCCCeEEEEEEEeCCEEEEEEEECCCCCCHHHH-HHhcCCCc
Confidence 34555 99999 7886 467789999998999999999999999999998 55555543
>PRK04184 DNA topoisomerase VI subunit B; Validated
Back Show alignment and domain information
Probab=98.16 E-value=5.6e-06 Score=71.67 Aligned_cols=55 Identities=29% Similarity=0.488 Sum_probs=40.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---cCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---DKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
++|||+||+||+..- ...+.|.|.+.. +++...|+|.|||+||++++++..|+.+
T Consensus 41 LkNLIeNAIDa~~~~--------------gilp~I~I~I~~~~~~~~~~~I~V~DNG~GIp~e~l~~iF~~f 98 (535)
T PRK04184 41 VKELVDNSLDACEEA--------------GILPDIKIEIKRVDEGKDHYRVTVEDNGPGIPPEEIPKVFGKL 98 (535)
T ss_pred HHHHHHHHHHHhhhc--------------CCCceEEEEEEEccCCCcEEEEEEEcCCCCCCHHHHHHHhhhh
Confidence 677999997766430 012467777765 3557899999999999999998777654
>PRK10604 sensor protein RstB; Provisional
Back Show alignment and domain information
Probab=98.15 E-value=8.4e-06 Score=67.30 Aligned_cols=49 Identities=29% Similarity=0.523 Sum_probs=40.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||. ++.+.|.+..+++.+.|+|.|||+||+++++. +++.+
T Consensus 324 l~NLl~NA------ik~~-------------~~~I~I~~~~~~~~~~I~V~D~G~Gi~~e~~~-~if~~ 372 (433)
T PRK10604 324 LDNLLNNA------LRYA-------------HSRVRVSLLLDGNQACLIVEDDGPGIPPEERE-RVFEP 372 (433)
T ss_pred HHHHHHHH------HHhC-------------CCeEEEEEEEECCEEEEEEEEcCCCCCHHHHh-hcCCC
Confidence 45588999 7775 36788999988999999999999999999994 44444
>PRK14868 DNA topoisomerase VI subunit B; Provisional
Back Show alignment and domain information
Probab=98.14 E-value=6.7e-06 Score=73.60 Aligned_cols=57 Identities=23% Similarity=0.332 Sum_probs=41.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.++|||.|| ++|+.- . ...+.|.|.+...++.+.|.|.|||+||+++++++.|..++
T Consensus 50 VLkNLIeNA------LDAs~~----~----gilp~I~V~Ie~~g~~v~I~VeDNG~GIp~EdLp~IFerf~ 106 (795)
T PRK14868 50 AVKEAVDNA------LDATEE----A----GILPDIYVEIEEVGDYYRLVVEDNGPGITKEQIPKVFGKLL 106 (795)
T ss_pred HHHHHHHHH------HHhCcc----c----CCCceEEEEEEECCCEEEEEEEEcCCCCCHHHHHHHhhhhc
Confidence 367799999 555410 0 01246888887777789999999999999999977665443
>PRK13837 two-component VirA-like sensor kinase; Provisional
Back Show alignment and domain information
Probab=98.14 E-value=7.3e-06 Score=73.12 Aligned_cols=54 Identities=24% Similarity=0.369 Sum_probs=42.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc---------------CCceEEEEEEcCCCCCHHHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD---------------KQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~---------------~~~~~I~I~DnGiGM~~e~l~ 113 (124)
++.| |+.|| +||. +.++.+.|.+... ++.+.|.|.|||+||+++.+
T Consensus 564 vl~N-Ll~NA------ik~~-----------~~~g~I~I~~~~~~~~~~~~~~~~~~~~~~~v~i~V~D~G~GI~~e~~- 624 (828)
T PRK13837 564 VLMN-LCSNA------AQAM-----------DGAGRVDISLSRAKLRAPKVLSHGVLPPGRYVLLRVSDTGAGIDEAVL- 624 (828)
T ss_pred HHHH-HHHHH------HHHc-----------ccCCeEEEEEEEeecccccccccccCCCCCEEEEEEEECCCCCCHHHH-
Confidence 4445 99999 7776 4567888888765 67799999999999999999
Q ss_pred hhcccccc
Q psy15895 114 SNLGTIAR 121 (124)
Q Consensus 114 ~~l~~i~~ 121 (124)
..+++++.
T Consensus 625 ~~iFe~F~ 632 (828)
T PRK13837 625 PHIFEPFF 632 (828)
T ss_pred HHhhCCcc
Confidence 45555544
>PRK11100 sensory histidine kinase CreC; Provisional
Back Show alignment and domain information
Probab=98.14 E-value=7.2e-06 Score=66.54 Aligned_cols=51 Identities=20% Similarity=0.423 Sum_probs=41.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +|+. .+++.+.|++..+++.+.|+|+|||+|||++++. .++++
T Consensus 373 l~nli~Na------~~~~-----------~~~~~i~i~~~~~~~~~~i~i~D~G~Gi~~~~~~-~i~~~ 423 (475)
T PRK11100 373 LGNLLDNA------IDFS-----------PEGGTITLSAEVDGEQVALSVEDQGPGIPDYALP-RIFER 423 (475)
T ss_pred HHHHHHHH------HHhC-----------CCCCEEEEEEEEcCCEEEEEEEECCCCCCHHHHH-HHHHH
Confidence 45588888 7775 3568899999999999999999999999999984 44343
>TIGR00585 mutl DNA mismatch repair protein MutL
Back Show alignment and domain information
Probab=98.11 E-value=5.7e-06 Score=66.49 Aligned_cols=57 Identities=21% Similarity=0.380 Sum_probs=38.6
Q ss_pred CcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 45 SDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 45 ~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.+..-.+.|||+||.||- ...|.|.+.. ++...|.|.|||.||+++++. .+++.+.+
T Consensus 21 ~~~~~~l~eLi~Na~dA~-------------------a~~I~i~~~~-~~~~~i~V~DnG~Gi~~~~l~-~~~~~~~t 77 (312)
T TIGR00585 21 ERPASVVKELVENSLDAG-------------------ATRIDVEIEE-GGLKLIEVSDNGSGIDKEDLP-LACERHAT 77 (312)
T ss_pred hhHHHHHHHHHHHHHHCC-------------------CCEEEEEEEe-CCEEEEEEEecCCCCCHHHHH-HHhhCCCc
Confidence 344445677999996642 1356666654 345569999999999999995 45554443
All proteins in this family for which the functions are known are involved in the process of generalized mismatch repair. This family is based on the phylogenomic analysis of JA Eisen (1999, Ph.D. Thesis, Stanford University).
>TIGR02956 TMAO_torS TMAO reductase sytem sensor TorS
Back Show alignment and domain information
Probab=98.11 E-value=7.2e-06 Score=73.06 Aligned_cols=51 Identities=29% Similarity=0.638 Sum_probs=40.6
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc-eEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN-RILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~-~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
++.| ||.|| +||. +.|.+.|.+...++. +.|+|.|+|+|||++++ ..++++
T Consensus 583 il~n-Li~NA------ik~~------------~~g~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 634 (968)
T TIGR02956 583 VLIN-LVGNA------IKFT------------DRGSVVLRVSLNDDSSLLFEVEDTGCGIAEEEQ-ATLFDA 634 (968)
T ss_pred HHHH-HHHHH------HhhC------------CCCeEEEEEEEcCCCeEEEEEEeCCCCCCHHHH-HHHHhh
Confidence 4444 99999 8886 357789999887777 99999999999999998 444433
This protein, TorS, is part of a regulatory system for the torCAD operon that encodes the pterin molybdenum cofactor-containing enzyme trimethylamine-N-oxide (TMAO) reductase (TorA), a cognate chaperone (TorD), and a penta-haem cytochrome (TorC). TorS works together with the inducer-binding protein TorT and the response regulator TorR. TorS contains histidine kinase ATPase (pfam02518), HAMP (pfam00672), phosphoacceptor (pfam00512), and phosphotransfer (pfam01627) domains and a response regulator receiver domain (pfam00072).
>TIGR03785 marine_sort_HK proteobacterial dedicated sortase system histidine kinase
Back Show alignment and domain information
Probab=98.10 E-value=9.9e-06 Score=71.58 Aligned_cols=52 Identities=21% Similarity=0.404 Sum_probs=42.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+|+.|| +||. ++++.|.|.+..+++.+.|+|.|||+||+++.+ +.+++++
T Consensus 602 l~NLI~NA------ik~s-----------~~~~~I~I~~~~~~~~v~I~V~D~G~GI~~e~~-~~IFe~F 653 (703)
T TIGR03785 602 LDKLVDNA------REFS-----------PEDGLIEVGLSQNKSHALLTVSNEGPPLPEDMG-EQLFDSM 653 (703)
T ss_pred HHHHHHHH------HHHC-----------CCCCeEEEEEEEcCCEEEEEEEEcCCCCCHHHH-HHHhCCC
Confidence 44588998 7886 456779999998899999999999999999999 5555444
This histidine kinase protein is paired with an adjacent response regulator (TIGR03787) gene. It co-occurs with a variant sortase enzyme (TIGR03784), usually in the same gene neighborhood, in proteobacterial species most of which are marine, and with an LPXTG motif-containing sortase target conserved protein (TIGR03788). Sortases and LPXTG proteins are far more common in Gram-positive bacteria, where sortase systems mediate attachment to the cell wall or cross-linking of pilin structures. We give this predicted sensor histidine kinase the gene symbol psdS, for Proteobacterial Dedicated Sortase system Sensor histidine kinase.
>PRK11091 aerobic respiration control sensor protein ArcB; Provisional
Back Show alignment and domain information
Probab=98.08 E-value=8.3e-06 Score=71.67 Aligned_cols=50 Identities=28% Similarity=0.614 Sum_probs=39.3
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+|+.| |+.|| +||. ..|.+.|.+... ++.+.|+|.|||+|||++++.+.|
T Consensus 401 qvl~N-Ll~NA------ik~~------------~~g~v~i~~~~~~~~~~~i~V~D~G~Gi~~~~~~~iF 451 (779)
T PRK11091 401 QILWN-LISNA------VKFT------------QQGGVTVRVRYEEGDMLTFEVEDSGIGIPEDELDKIF 451 (779)
T ss_pred HHHHH-HHHHH------HHhC------------CCCcEEEEEEEccCCEEEEEEEecCCCCCHHHHHHHH
Confidence 45566 99999 7876 246688888776 677999999999999999994433
>PRK11466 hybrid sensory histidine kinase TorS; Provisional
Back Show alignment and domain information
Probab=98.07 E-value=1.1e-05 Score=71.64 Aligned_cols=50 Identities=34% Similarity=0.612 Sum_probs=40.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||. ..|.+.|.+..+++.+.|.|.|||+||+++.+ +.++++
T Consensus 566 l~NLl~NA------ik~~------------~~g~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~if~~ 615 (914)
T PRK11466 566 ITNLLSNA------LRFT------------DEGSIVLRSRTDGEQWLVEVEDSGCGIDPAKL-AEIFQP 615 (914)
T ss_pred HHHHHHHH------HHhC------------CCCeEEEEEEEcCCEEEEEEEECCCCCCHHHH-HHHhch
Confidence 34489999 7876 35689999988888999999999999999999 444444
>PRK11360 sensory histidine kinase AtoS; Provisional
Back Show alignment and domain information
Probab=98.05 E-value=1.6e-05 Score=65.64 Aligned_cols=52 Identities=23% Similarity=0.325 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc-eEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN-RILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~-~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+++.|| +++. ..++.+.|.+...++. +.|+|.|||+||+++.+ +.++.++
T Consensus 505 ~~nli~na------~~~~-----------~~~~~i~v~~~~~~~~~~~i~v~D~G~G~~~~~~-~~~f~~~ 557 (607)
T PRK11360 505 LLNILINA------VQAI-----------SARGKIRIRTWQYSDGQVAVSIEDNGCGIDPELL-KKIFDPF 557 (607)
T ss_pred HHHHHHHH------HHHh-----------cCCCeEEEEEEEcCCCEEEEEEEeCCCCCCHHHH-hhhcCCc
Confidence 34488888 6665 3467889988877666 99999999999999998 4444443
>PRK15053 dpiB sensor histidine kinase DpiB; Provisional
Back Show alignment and domain information
Probab=98.05 E-value=1.6e-05 Score=66.63 Aligned_cols=59 Identities=17% Similarity=0.210 Sum_probs=41.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
++.| |++||+ ++...+ . +.++.+.|.+..+++.+.|.|.|||+|||++.+ +++++.+.|
T Consensus 436 vl~n-Ll~NAi------~~~~~~--~-----~~~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~iF~~~~~ 494 (545)
T PRK15053 436 IVGN-LLDNAF------EASLRS--D-----EGNKIVELFLSDEGDDVVIEVADQGCGVPESLR-DKIFEQGVS 494 (545)
T ss_pred HHHH-HHHHHH------HHHhhC--C-----CCCceEEEEEEECCCEEEEEEEeCCCCcCHHHH-HHHhCCCCC
Confidence 4444 999994 443211 0 234678888888888999999999999999998 455555443
>PRK10618 phosphotransfer intermediate protein in two-component regulatory system with RcsBC; Provisional
Back Show alignment and domain information
Probab=98.05 E-value=1.3e-05 Score=72.81 Aligned_cols=53 Identities=25% Similarity=0.448 Sum_probs=39.5
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC---CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK---QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~---~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+|+.| |+.|| +|+. ..|.+.|.+.... +.+.|+|.|||+||+++.+ ++++++.
T Consensus 568 QVL~N-LL~NA------ik~t------------~~G~I~I~v~~~~~~~~~l~I~V~DtG~GI~~e~l-~~IFePF 623 (894)
T PRK10618 568 KILLL-LLNYA------ITTT------------AYGKITLEVDQDESSPDRLTIRILDTGAGVSIKEL-DNLHFPF 623 (894)
T ss_pred HHHHH-HHHHH------HHhC------------CCCeEEEEEEEccCCCcEEEEEEEECCCCCCHHHH-HHhcCcc
Confidence 34455 99999 7876 3567888876533 5699999999999999999 4555444
>PRK09467 envZ osmolarity sensor protein; Provisional
Back Show alignment and domain information
Probab=98.05 E-value=1.7e-05 Score=64.37 Aligned_cols=47 Identities=28% Similarity=0.542 Sum_probs=38.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|+.|| +||. .+.+.|.+..+++.+.|+|.|+|+||+++++.+.|
T Consensus 336 l~NLl~NA------~k~~-------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~~~ 382 (435)
T PRK09467 336 LANLVVNA------ARYG-------------NGWIKVSSGTEGKRAWFQVEDDGPGIPPEQLKHLF 382 (435)
T ss_pred HHHHHHHH------HHhC-------------CCeEEEEEEecCCEEEEEEEecCCCcCHHHHHHhc
Confidence 45588888 7775 36788888888888999999999999999994443
>PRK09470 cpxA two-component sensor protein; Provisional
Back Show alignment and domain information
Probab=98.04 E-value=1.7e-05 Score=64.46 Aligned_cols=47 Identities=36% Similarity=0.664 Sum_probs=38.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+|++|| +||. .+.+.|.+..+++.+.|+|.|||+||+++++.+.|
T Consensus 358 l~nli~NA------~~~~-------------~~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 404 (461)
T PRK09470 358 LENIVRNA------LRYS-------------HTKIEVAFSVDKDGLTITVDDDGPGVPEEEREQIF 404 (461)
T ss_pred HHHHHHHH------HHhC-------------CCcEEEEEEEECCEEEEEEEECCCCCCHHHHHHhc
Confidence 55688888 7775 24578888888899999999999999999995444
>TIGR01052 top6b DNA topoisomerase VI, B subunit
Back Show alignment and domain information
Probab=98.04 E-value=1.6e-05 Score=68.21 Aligned_cols=57 Identities=25% Similarity=0.387 Sum_probs=41.0
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC-CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK-QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~-~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
.++||+.||+||+..- ...+.|.|.+...+ +...|+|.|||+||+++++++.|..+.
T Consensus 32 VlkELVeNAIDA~~~~--------------g~~p~I~V~i~~~g~~~~~I~V~DNG~GIp~edl~~iF~rf~ 89 (488)
T TIGR01052 32 VIHELVTNSLDACEEA--------------GILPDIKVEIEKIGKDHYKVTVEDNGPGIPEEYIPKVFGKML 89 (488)
T ss_pred HHHHHHHHHHHHhhcc--------------CCCceEEEEEEECCCceEEEEEEECCCCCCHHHHHhhhhhcc
Confidence 3667999997776430 11246777776543 467899999999999999977766543
This model describes DNA topoisomerase VI, an archaeal type II DNA topoisomerase (DNA gyrase).
>TIGR02966 phoR_proteo phosphate regulon sensor kinase PhoR
Back Show alignment and domain information
Probab=98.01 E-value=2.1e-05 Score=60.44 Aligned_cols=51 Identities=29% Similarity=0.573 Sum_probs=40.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +++. +.++.+.|.+...++.+.+.|.|||.||+++.+ .+++.+
T Consensus 234 l~nll~Na------i~~~-----------~~~~~i~i~~~~~~~~~~i~i~d~G~gi~~~~~-~~if~~ 284 (333)
T TIGR02966 234 FSNLVSNA------IKYT-----------PEGGTITVRWRRDGGGAEFSVTDTGIGIAPEHL-PRLTER 284 (333)
T ss_pred HHHHHHHh------heeC-----------CCCCeEEEEEEEcCCEEEEEEEecCCCCCHHHH-hhhccC
Confidence 45588888 6775 356788999888888899999999999999999 444443
Members of this protein family are the regulatory histidine kinase PhoR associated with the phosphate ABC transporter in most Proteobacteria. Related proteins from Gram-positive organisms are not included in this model. The phoR gene usually is adjacent to the response regulator phoB gene (TIGR02154).
>PRK10841 hybrid sensory kinase in two-component regulatory system with RcsB and YojN; Provisional
Back Show alignment and domain information
Probab=97.98 E-value=1.9e-05 Score=71.84 Aligned_cols=52 Identities=25% Similarity=0.505 Sum_probs=41.6
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+++.| |+.|| +||+ ..|.+.|.+..+++.+.|+|.|||+||+++++ ++++++
T Consensus 565 qvl~N-Ll~NA------ik~t------------~~G~I~I~v~~~~~~l~i~V~DtG~GI~~e~~-~~lFep 616 (924)
T PRK10841 565 QVISN-LLSNA------IKFT------------DTGCIVLHVRVDGDYLSFRVRDTGVGIPAKEV-VRLFDP 616 (924)
T ss_pred HHHHH-HHHHH------HhhC------------CCCcEEEEEEEeCCEEEEEEEEcCcCCCHHHH-HHHhcc
Confidence 35555 99999 8886 24678888888888999999999999999999 444444
>PRK09835 sensor kinase CusS; Provisional
Back Show alignment and domain information
Probab=97.98 E-value=2.6e-05 Score=63.90 Aligned_cols=48 Identities=27% Similarity=0.421 Sum_probs=39.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+|+.|| +||+ ++++.|.|.+..+++.+.|+|.|+|.||++++++..
T Consensus 380 l~nll~Na------~~~~-----------~~~~~I~i~~~~~~~~~~i~v~d~G~gi~~~~~~~i 427 (482)
T PRK09835 380 ISNLLSNA------LRYT-----------PAGEAITVRCQEVDHQVQLVVENPGTPIAPEHLPRL 427 (482)
T ss_pred HHHHHHHH------HhcC-----------CCCCeEEEEEEEeCCEEEEEEEECCCCcCHHHHHHH
Confidence 45588888 7876 456779999988888899999999999999999543
>PRK13560 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=97.98 E-value=1.4e-05 Score=68.88 Aligned_cols=48 Identities=29% Similarity=0.380 Sum_probs=36.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l 112 (124)
+.+|+.|| +||+... ...+.|.|.+... ++.+.|+|+|||+|||++..
T Consensus 716 l~NLl~NA------ik~~~~~--------~~~~~i~i~~~~~~~~~v~i~V~D~G~GI~~~~~ 764 (807)
T PRK13560 716 ISELLSNA------LKHAFPD--------GAAGNIKVEIREQGDGMVNLCVADDGIGLPAGFD 764 (807)
T ss_pred HHHHHHHH------HHhhccC--------CCCceEEEEEEEcCCCEEEEEEEeCCCcCCcccc
Confidence 44499999 7886310 2346788888776 56899999999999998754
>COG0323 MutL DNA mismatch repair enzyme (predicted ATPase) [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=97.95 E-value=7.8e-06 Score=72.00 Aligned_cols=48 Identities=27% Similarity=0.470 Sum_probs=35.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhh
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+--.++||+.||+||= -=+|.|..+ ++...|+|+|||+||++++++--
T Consensus 24 PaSVVKELVENSlDAG---------------------At~I~I~ve~gG~~~I~V~DNG~Gi~~~Dl~la 72 (638)
T COG0323 24 PASVVKELVENSLDAG---------------------ATRIDIEVEGGGLKLIRVRDNGSGIDKEDLPLA 72 (638)
T ss_pred HHHHHHHHHhcccccC---------------------CCEEEEEEccCCccEEEEEECCCCCCHHHHHHH
Confidence 4456899999995442 235666544 45666999999999999999543
>COG3920 Signal transduction histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.93 E-value=2.4e-05 Score=60.54 Aligned_cols=49 Identities=33% Similarity=0.500 Sum_probs=40.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCc--eEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQN--RILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~--~~I~I~DnGiGM~~e~ 111 (124)
+++|||++|| +||..+. .+.|+|.|.+..+++. ..+.|+|||.|+|++.
T Consensus 125 liv~EL~tNa------~Khaf~~--------~~~G~I~I~~~~~~~~~~~~l~v~deg~G~~~~~ 175 (221)
T COG3920 125 LIVHELVTNA------LKHAFLS--------RPGGEIRITLSREGDGGRFLLTVWDEGGGPPVEA 175 (221)
T ss_pred HHHHHHHHHH------HHhcCCC--------CCCCEEEEEEEEcCCCCeEEEEEEECCCCCCCCC
Confidence 4689999999 9998642 2578999999887764 8999999999999753
>PRK10815 sensor protein PhoQ; Provisional
Back Show alignment and domain information
Probab=97.89 E-value=4.2e-05 Score=64.63 Aligned_cols=49 Identities=16% Similarity=0.289 Sum_probs=38.1
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
+.+|+.|| +||+. +.+.|.+..+++.+.|+|.|+|+||+++.++ .++++
T Consensus 383 l~NLi~NA------ik~~~-------------~~i~I~~~~~~~~v~I~V~D~G~GI~~e~~~-~iF~~ 431 (485)
T PRK10815 383 MGNVLDNA------CKYCL-------------EFVEISARQTDEHLHIVVEDDGPGIPESKRE-LIFDR 431 (485)
T ss_pred HHHHHHHH------HHhcC-------------CcEEEEEEEeCCEEEEEEEECCCCcCHHHHH-HHhCC
Confidence 44588998 77761 2467778788889999999999999999994 44444
>PRK00095 mutL DNA mismatch repair protein; Reviewed
Back Show alignment and domain information
Probab=97.87 E-value=3.3e-05 Score=67.72 Aligned_cols=51 Identities=29% Similarity=0.545 Sum_probs=38.4
Q ss_pred cHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 46 DKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 46 ~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
.+.-.+.|||+||+||- ...|.|.+. +++...|+|.|||+||+++++...+
T Consensus 22 ~~~svvkElveNsiDAg-------------------at~I~v~i~-~~g~~~i~V~DnG~Gi~~~~~~~~~ 72 (617)
T PRK00095 22 RPASVVKELVENALDAG-------------------ATRIDIEIE-EGGLKLIRVRDNGCGISKEDLALAL 72 (617)
T ss_pred CHHHHHHHHHHHHHhCC-------------------CCEEEEEEE-eCCeEEEEEEEcCCCCCHHHHHHHh
Confidence 35556889999997642 245666664 4567899999999999999985543
>PRK11073 glnL nitrogen regulation protein NR(II); Provisional
Back Show alignment and domain information
Probab=97.78 E-value=8.4e-05 Score=58.59 Aligned_cols=56 Identities=21% Similarity=0.301 Sum_probs=37.4
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcC------C----ceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDK------Q----NRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~------~----~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+++.| |+.|| +++.. +.++.+.|.+.... . ...|.|.|||+||+++.+ +.++
T Consensus 240 ~vl~n-Ll~NA------~~~~~----------~~~~~i~i~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~-~~iF 301 (348)
T PRK11073 240 QVLLN-IVRNA------LQALG----------PEGGTITLRTRTAFQLTLHGERYRLAARIDIEDNGPGIPPHLQ-DTLF 301 (348)
T ss_pred HHHHH-HHHHH------HHHhc----------cCCCeEEEEEccccccccCCccCCceEEEEEEeCCCCCCHHHH-hhcc
Confidence 34555 99999 66642 24667777664321 1 357999999999999988 5555
Q ss_pred cccc
Q psy15895 118 TIAR 121 (124)
Q Consensus 118 ~i~~ 121 (124)
+++.
T Consensus 302 ~~~~ 305 (348)
T PRK11073 302 YPMV 305 (348)
T ss_pred CCcc
Confidence 5543
>PRK13557 histidine kinase; Provisional
Back Show alignment and domain information
Probab=97.78 E-value=9.6e-05 Score=60.90 Aligned_cols=53 Identities=21% Similarity=0.310 Sum_probs=37.3
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---------------cCCceEEEEEEcCCCCCHHHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---------------DKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---------------~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
++.| |+.|| +++. +.++.+.|.... +++.+.|+|.|||+||+++..
T Consensus 281 vl~n-ll~NA------~~~~-----------~~~~~i~i~~~~~~~~~~~~~~~~~~~~~~~~~i~v~D~G~Gi~~~~~- 341 (540)
T PRK13557 281 ALLN-VLINA------RDAM-----------PEGGRVTIRTRNVEIEDEDLAMYHGLPPGRYVSIAVTDTGSGMPPEIL- 341 (540)
T ss_pred HHHH-HHHHH------HHhc-----------ccCCeEEEEEeeeccCccccccccCCCCCCEEEEEEEcCCCCCCHHHH-
Confidence 4455 89999 5665 345666666542 445789999999999999998
Q ss_pred hhccccc
Q psy15895 114 SNLGTIA 120 (124)
Q Consensus 114 ~~l~~i~ 120 (124)
..++.++
T Consensus 342 ~~if~~~ 348 (540)
T PRK13557 342 ARVMDPF 348 (540)
T ss_pred HhccCCC
Confidence 4444443
>PRK14867 DNA topoisomerase VI subunit B; Provisional
Back Show alignment and domain information
Probab=97.77 E-value=7.8e-05 Score=66.00 Aligned_cols=56 Identities=23% Similarity=0.388 Sum_probs=41.2
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
.++||+.||+||+..- ...+.|.|.+... ++.+.|+|.|||+||++++++..|..+
T Consensus 40 VVkELVeNAIDA~~~~--------------g~~p~I~V~I~~~g~~~~~I~V~DNG~GIp~e~l~~iFerF 96 (659)
T PRK14867 40 IIHELVTNSLDACEEA--------------EILPDIKVEIEKLGSDHYKVAVEDNGPGIPPEFVPKVFGKM 96 (659)
T ss_pred HHHHHHHHHHHHhhcc--------------CCCceEEEEEEECCCcEEEEEEEeeCeeCCHHHHhhhhccc
Confidence 3577999997776430 1135778888764 356889999999999999997766553
>smart00387 HATPase_c Histidine kinase-like ATPases
Back Show alignment and domain information
Probab=97.73 E-value=0.00022 Score=45.71 Aligned_cols=50 Identities=24% Similarity=0.586 Sum_probs=39.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLG 117 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~ 117 (124)
+.+++.|| +++. ...+.+.|.+..+++...+.|.|+|.||+++.+.+.+.
T Consensus 10 ~~~l~~n~------~~~~-----------~~~~~v~i~~~~~~~~~~i~i~d~g~g~~~~~~~~~~~ 59 (111)
T smart00387 10 LSNLLDNA------IKYT-----------PEGGRITVTLERDGDHLEITVEDNGPGIPPEDLEKIFE 59 (111)
T ss_pred HHHHHHHH------HhcC-----------CCCCeEEEEEEEcCCEEEEEEEeCCCCCCHHHHHHHhc
Confidence 45578888 5654 23578899999888999999999999999999866554
Histidine kinase-, DNA gyrase B-, phytochrome-like ATPases.
>PRK04069 serine-protein kinase RsbW; Provisional
Back Show alignment and domain information
Probab=97.70 E-value=0.00018 Score=52.62 Aligned_cols=52 Identities=23% Similarity=0.385 Sum_probs=41.4
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
+.+.|++.|| +++..-. ..++.+.|.+...++.+.+.|+|+|+||+++.+..
T Consensus 45 lav~Ea~~Na------i~Hg~~~--------~~~~~I~I~~~~~~~~l~i~V~D~G~g~d~~~~~~ 96 (161)
T PRK04069 45 IAVSEACTNA------VQHAYKE--------DEVGEIHIRFEIYEDRLEIVVADNGVSFDYETLKS 96 (161)
T ss_pred HHHHHHHHHH------HHhccCC--------CCCCeEEEEEEEECCEEEEEEEECCcCCChHHhcc
Confidence 4578899999 7776311 23578899998889999999999999999887744
>PRK11107 hybrid sensory histidine kinase BarA; Provisional
Back Show alignment and domain information
Probab=97.69 E-value=9.3e-05 Score=65.49 Aligned_cols=49 Identities=20% Similarity=0.504 Sum_probs=33.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE--cC---CceEEEEEEcCCCCCHHHHHhhc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST--DK---QNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~--~~---~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
++.| |+.|| +||+ ..|.+.|.+.. .. ..+.|+|.|||+||+++++.+.|
T Consensus 412 vl~N-Ll~NA------ik~~------------~~g~v~i~v~~~~~~~~~~~~~i~V~D~G~Gi~~~~~~~if 465 (919)
T PRK11107 412 IITN-LVGNA------IKFT------------ESGNIDILVELRALSNTKVQLEVQIRDTGIGISERQQSQLF 465 (919)
T ss_pred HHHH-HHHHH------hhcC------------CCCcEEEEEEEEecCCCeeEEEEEEEEeCCCcCHHHHHHHh
Confidence 4444 99999 7886 23455555542 22 25889999999999999994433
>PRK10337 sensor protein QseC; Provisional
Back Show alignment and domain information
Probab=97.68 E-value=0.00015 Score=59.26 Aligned_cols=45 Identities=29% Similarity=0.539 Sum_probs=34.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+++|+.|| +||. +.++.+.|.+... .|+|.|||+|||++++++.|
T Consensus 357 l~Nli~NA------~k~~-----------~~~~~i~i~~~~~----~i~i~D~G~Gi~~~~~~~if 401 (449)
T PRK10337 357 VRNLLDNA------IRYS-----------PQGSVVDVTLNAR----NFTVRDNGPGVTPEALARIG 401 (449)
T ss_pred HHHHHHHH------HhhC-----------CCCCeEEEEEEee----EEEEEECCCCCCHHHHHHhc
Confidence 55688898 8886 4567777776543 69999999999999995544
>cd00075 HATPase_c Histidine kinase-like ATPases; This family includes several ATP-binding proteins for example: histidine kinase, DNA gyrase B, topoisomerases, heat shock protein HSP90, phytochrome-like ATPases and DNA mismatch repair proteins
Back Show alignment and domain information
Probab=97.62 E-value=0.00039 Score=43.81 Aligned_cols=50 Identities=24% Similarity=0.514 Sum_probs=38.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+.+++.|| +++.. ...+.+.|.+..+++.+.+.|.|+|.||++..+.+.+
T Consensus 5 ~~~ll~Na------~~~~~----------~~~~~v~i~~~~~~~~~~v~i~d~g~g~~~~~~~~~~ 54 (103)
T cd00075 5 LLNLLSNA------IKHTP----------EGGGRITISVERDGDHLEIRVEDNGPGIPEEDLERIF 54 (103)
T ss_pred HHHHHHHH------HHhCc----------CCCCeEEEEEEecCCEEEEEEEeCCCCCCHHHHHHHh
Confidence 45699999 55541 1146788888888889999999999999999886544
>PRK10547 chemotaxis protein CheA; Provisional
Back Show alignment and domain information
Probab=97.62 E-value=0.00017 Score=63.96 Aligned_cols=34 Identities=21% Similarity=0.426 Sum_probs=30.5
Q ss_pred CCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHH
Q psy15895 80 HDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 80 ~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
+..|.|+|++...++.+.|+|.|+|.||+++.+.
T Consensus 414 p~~G~I~l~a~~~~~~v~I~V~DdG~GId~e~i~ 447 (670)
T PRK10547 414 NSVGNLILSAEHQGGNICIEVTDDGAGLNRERIL 447 (670)
T ss_pred CCCCceEEEEEEcCCEEEEEEEeCCCCCCHHHHH
Confidence 5678899999999999999999999999998764
>PRK11644 sensory histidine kinase UhpB; Provisional
Back Show alignment and domain information
Probab=97.58 E-value=0.00011 Score=62.50 Aligned_cols=44 Identities=18% Similarity=0.287 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|++.|| +||. ..+.+.|++..+++.+.++|+|||+||++++.
T Consensus 415 l~nlL~NA------iKha------------~~~~I~I~l~~~~~~i~l~V~DnG~Gi~~~~~ 458 (495)
T PRK11644 415 CQEGLNNI------VKHA------------DASAVTLQGWQQDERLMLVIEDDGSGLPPGSG 458 (495)
T ss_pred HHHHHHHH------HHhC------------CCCEEEEEEEEcCCEEEEEEEECCCCCCcCCC
Confidence 34577777 7876 24578888888888999999999999998754
>COG2972 Predicted signal transduction protein with a C-terminal ATPase domain [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.57 E-value=0.00024 Score=59.81 Aligned_cols=58 Identities=21% Similarity=0.327 Sum_probs=44.2
Q ss_pred CcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 45 SDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 45 ~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
.++...+.-|+.||. .+.... + .+++.|.|.+...++.+.++|+|||+||+++.....
T Consensus 349 ~~p~l~lqpLvENAi------~hgi~~--~-----~~~~~I~i~~~~~~~~i~i~i~Dng~g~~~~~~~~~ 406 (456)
T COG2972 349 IDPKLVLQPLVENAI------EHGIEP--K-----RPGGSIAISAKKQDDVIQISISDNGPGIDEEKLEGL 406 (456)
T ss_pred cCchHHHhHHHHHHH------HHhccc--C-----CCCCEEEEEEEEcCCEEEEEEeeCCCCCChhHHHHH
Confidence 445666777999994 443211 1 468899999998899999999999999999877443
>COG5000 NtrY Signal transduction histidine kinase involved in nitrogen fixation and metabolism regulation [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.55 E-value=0.00023 Score=62.73 Aligned_cols=64 Identities=17% Similarity=0.305 Sum_probs=48.2
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.|+|-| |+.||.+|+.+..... .+.+.++++....++.+++.|.|||.|.|.+.. .++.+|.-+
T Consensus 602 ~Qvf~N-liKNA~EAi~~~~~~e----------~~~~~i~~~~~~~~g~i~v~V~DNGkG~p~e~r-~r~~EPYvT 665 (712)
T COG5000 602 GQVFGN-LLKNAAEAIEAVEAEE----------RRTALIRVSLDDADGRIVVDVIDNGKGFPRENR-HRALEPYVT 665 (712)
T ss_pred HHHHHH-HHHhHHHHhhhccccc----------CCcceEEEEEecCCCeEEEEEecCCCCCChHHh-hhhccCcee
Confidence 367767 9999999997643221 234456666667778899999999999999999 777777644
>PRK10600 nitrate/nitrite sensor protein NarX; Provisional
Back Show alignment and domain information
Probab=97.51 E-value=0.00019 Score=61.23 Aligned_cols=43 Identities=26% Similarity=0.499 Sum_probs=35.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
++|++.|| +||. ..+.+.|.+..+++.+.|+|.|||+||+++.
T Consensus 474 l~ell~NA------~kha------------~a~~i~V~~~~~~~~~~l~V~D~G~Gi~~~~ 516 (569)
T PRK10600 474 AREALSNA------LKHA------------QASEVVVTVAQNQNQVKLSVQDNGCGVPENA 516 (569)
T ss_pred HHHHHHHH------HHhC------------CCCeEEEEEEEcCCEEEEEEEECCCCCCccc
Confidence 56677887 7886 2357888888888899999999999999864
>COG3852 NtrB Signal transduction histidine kinase, nitrogen specific [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.49 E-value=0.00012 Score=60.13 Aligned_cols=67 Identities=27% Similarity=0.376 Sum_probs=46.0
Q ss_pred hhcCcH----HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE------cC----CceEEEEEEcCCCC
Q psy15895 42 SLYSDK----EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST------DK----QNRILTIQDSGIGM 107 (124)
Q Consensus 42 ~~y~~~----~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~------~~----~~~~I~I~DnGiGM 107 (124)
+++.|+ |+|+| |+.||..|+.-.- +.+|+|.+++.. .+ =...|.|.|||.|+
T Consensus 234 ~v~~d~DqliQv~LN-lVrNAaqA~~~~~-------------~~~g~I~LrTR~~~q~~i~g~r~rl~l~leViDNGPGV 299 (363)
T COG3852 234 EVLGDRDQLIQVFLN-LVRNAAQALGGRA-------------DEGGEIILRTRTGIQLTIAGTRYRLALPLEVIDNGPGV 299 (363)
T ss_pred cccCCHHHHHHHHHH-HHHHHHHHhcCCC-------------CCCceEEEEeccceEEEccCceeEeeeeeEEecCCCCC
Confidence 456664 68999 9999987774310 245777666632 11 12567899999999
Q ss_pred CHHHHHhhccccccCC
Q psy15895 108 TKEELKSNLGTIARSG 123 (124)
Q Consensus 108 ~~e~l~~~l~~i~~S~ 123 (124)
|++-. ..++.+.-||
T Consensus 300 P~~L~-~~lF~P~Vs~ 314 (363)
T COG3852 300 PPDLQ-DHLFYPMVSG 314 (363)
T ss_pred ChHHh-hhcccccccc
Confidence 99888 7777776665
>PRK05559 DNA topoisomerase IV subunit B; Reviewed
Back Show alignment and domain information
Probab=97.48 E-value=8.7e-05 Score=65.38 Aligned_cols=47 Identities=19% Similarity=0.381 Sum_probs=36.1
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
.+.|||.||+|++.. .....|.|.+..++ .|+|.|||.|||.+..+.
T Consensus 41 lv~EivdNaiDe~~a---------------g~a~~I~V~i~~dg---~I~V~DnGrGIP~~~~~~ 87 (631)
T PRK05559 41 LVQEVIDNSVDEALA---------------GHGKRIEVTLHADG---SVSVRDNGRGIPVGIHPE 87 (631)
T ss_pred hhhhhhccccchhhc---------------CCCCEEEEEEeCCC---cEEEEEcCCCCCcccccc
Confidence 467899999888743 12456777776553 899999999999998866
>PRK09959 hybrid sensory histidine kinase in two-component regulatory system with EvgA; Provisional
Back Show alignment and domain information
Probab=97.44 E-value=0.0004 Score=63.76 Aligned_cols=52 Identities=37% Similarity=0.492 Sum_probs=34.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---cC--CceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---DK--QNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---~~--~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
|+.| |+.|| +||.. .|.+.|.+.. ++ ..+.|+|.|||+||+++++ ++++++.
T Consensus 832 vl~N-Ll~NA------ik~~~------------~g~i~i~~~~~~~~~~~~~~~i~V~D~G~Gi~~~~~-~~iF~~f 888 (1197)
T PRK09959 832 VLSN-LLSNA------LKFTT------------EGAVKITTSLGHIDDNHAVIKMTIMDSGSGLSQEEQ-QQLFKRY 888 (1197)
T ss_pred HHHH-HHHHH------HHhCC------------CCCEEEEEEEeeecCCceEEEEEEEEcCCCCCHHHH-HHhhccc
Confidence 4445 99999 78762 3444554431 22 2477999999999999999 5555544
>TIGR01924 rsbW_low_gc serine-protein kinase RsbW
Back Show alignment and domain information
Probab=97.38 E-value=0.00083 Score=49.16 Aligned_cols=52 Identities=15% Similarity=0.283 Sum_probs=41.5
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKS 114 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~ 114 (124)
+.+.|++.|| ++|..-. ..++.+.|.+...++.+.+.|.|+|.|++.+.+..
T Consensus 45 lav~Ea~~Na------i~ha~~~--------~~~~~I~I~~~~~~~~l~i~V~D~G~gfd~~~~~~ 96 (159)
T TIGR01924 45 IAVSEACTNA------VKHAYKE--------GENGEIGISFHIYEDRLEIIVSDQGDSFDMDTFKQ 96 (159)
T ss_pred HHHHHHHHHH------HHhccCC--------CCCCeEEEEEEEeCCEEEEEEEEcccccCchhhcc
Confidence 4578899999 7776311 24578999999999999999999999999887643
This model describes the anti-sigma B factor also known as serine-protein kinase RsbW. Sigma B controls the general stress regulon in B subtilis and is activated by cell stresses such as stationary phase and heat shock. RsbW binds to sigma B and prevents formation of the transcription complex at the promoter. RsbV (anti-anti-sigma factor) binds to RsbW to inhibit association with sigma B, however RsbW can phosphorylate RsbV, causing disassociation of the RsbV/RsbW complex. Low ATP level or environmental stress causes the dephosphorylation of RsbV.
>TIGR01925 spIIAB anti-sigma F factor
Back Show alignment and domain information
Probab=97.32 E-value=0.0011 Score=46.35 Aligned_cols=47 Identities=21% Similarity=0.356 Sum_probs=35.6
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
..+.|++.|| +++..- . +.++.+.|.+...++.+.++|.|+|.||+.
T Consensus 42 ~~l~eli~Na------i~h~~~---~-----~~~~~I~v~~~~~~~~~~i~I~D~G~gi~~ 88 (137)
T TIGR01925 42 TAVSEAVTNA------IIHGYE---E-----NCEGVVYISATIEDHEVYITVRDEGIGIEN 88 (137)
T ss_pred HHHHHHHHHH------HHhccC---C-----CCCcEEEEEEEEeCCEEEEEEEEcCCCcCc
Confidence 3456788998 565311 0 235789999988889999999999999983
This model describes the SpoIIAB anti-sigma F factor. Sigma F regulates spore development in B subtilis. SpoIIAB binds to sigma F, preventing formation of the transcription complex at the promoter. SpoIIAA (anti-anti-sigma F factor) binds to SpoIIAB to inhibit association with sigma F, however SpoIIAB can phosphorylate SpoIIAA, causing disassociation of the SpoIIAA/B complex. The SpoIIE phosphatase dephosphorylates SpoIIAA.
>COG4251 Bacteriophytochrome (light-regulated signal transduction histidine kinase) [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.28 E-value=0.00036 Score=61.68 Aligned_cols=52 Identities=23% Similarity=0.519 Sum_probs=43.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
+||.| |++|| +||.. ++.+.|.|.+...++.+++.|.|||+|+++..+.+-|
T Consensus 639 qv~~N-Li~Na------ik~~~----------~e~~~i~I~~~r~ed~~t~sV~dng~Gi~~a~~~riF 690 (750)
T COG4251 639 QVFQN-LIANA------IKFGG----------PENPDIEISAERQEDEWTFSVRDNGIGIDPAYFERIF 690 (750)
T ss_pred HHHHH-HHhhh------eecCC----------CCCCceEEeeeccCCceEEEecCCCCCcCHHHHHHHH
Confidence 56677 99999 88874 3458888888889999999999999999999994433
>COG0643 CheA Chemotaxis protein histidine kinase and related kinases [Cell motility and secretion / Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.27 E-value=0.00049 Score=61.60 Aligned_cols=54 Identities=20% Similarity=0.398 Sum_probs=40.3
Q ss_pred HHHHHhhHHHHH---HHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHH
Q psy15895 51 IRELISNASDAL---EKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 51 l~eLl~NA~dA~---~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
+| ||.||.|-= .+.|.. .+| ++.|.|+++.+..++++.|+|+|.|-||+.+.+.
T Consensus 438 ~H-LvRNAvDHGIE~pE~R~a---~GK-----p~~G~I~L~A~~~gn~ivIev~DDG~Gid~ekI~ 494 (716)
T COG0643 438 TH-LVRNAVDHGIETPEERRA---AGK-----PEEGTITLSAYHEGNNIVIEVSDDGAGIDREKIR 494 (716)
T ss_pred HH-HHhcchhccCCCHHHHHH---cCC-----CCcceEEEEEEcCCCeEEEEEeeCCCCCCHHHHH
Confidence 56 889997752 122222 133 6789999999999999999999999999655543
>PRK10935 nitrate/nitrite sensor protein NarQ; Provisional
Back Show alignment and domain information
Probab=97.21 E-value=0.00064 Score=57.10 Aligned_cols=43 Identities=23% Similarity=0.425 Sum_probs=33.7
Q ss_pred HHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEc-CCceEEEEEEcCCCCCHHHH
Q psy15895 52 RELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTD-KQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 52 ~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~-~~~~~I~I~DnGiGM~~e~l 112 (124)
.+++.|| +||. ..+.+.|.+... ++.+.|+|.|||+|||++..
T Consensus 477 ~nll~NA------~k~~------------~~~~i~i~~~~~~~~~~~i~V~D~G~Gi~~~~~ 520 (565)
T PRK10935 477 REATLNA------IKHA------------NASEIAVSCVTNPDGEHTVSIRDDGIGIGELKE 520 (565)
T ss_pred HHHHHHH------HhcC------------CCCeEEEEEEEcCCCEEEEEEEECCcCcCCCCC
Confidence 4488888 7775 346788888766 67899999999999998654
>PF13581 HATPase_c_2: Histidine kinase-like ATPase domain
Back Show alignment and domain information
Probab=97.18 E-value=0.0026 Score=43.64 Aligned_cols=53 Identities=21% Similarity=0.431 Sum_probs=41.9
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+.+.|++.|| +++.... ...+.+.|++..+++.+.|.|.|+|.|.+.......
T Consensus 34 lav~E~~~Na------v~H~~~~--------~~~~~v~v~~~~~~~~l~i~v~D~G~~~d~~~~~~~ 86 (125)
T PF13581_consen 34 LAVSEALTNA------VEHGYPG--------DPDGPVDVRLEVDPDRLRISVRDNGPGFDPEQLPQP 86 (125)
T ss_pred HHHHHHHHHH------HHHcCCC--------CCCcEEEEEEEEcCCEEEEEEEECCCCCChhhccCc
Confidence 4478999999 7887421 124778888889999999999999999999876443
>COG3850 NarQ Signal transduction histidine kinase, nitrate/nitrite-specific [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=97.08 E-value=0.0011 Score=57.66 Aligned_cols=42 Identities=26% Similarity=0.596 Sum_probs=35.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+||-+.|| +|.+ ...+++|.+...++.+.++|+|||||+++.
T Consensus 486 vREAlsNa------~KHa------------~As~i~V~~~~~~g~~~~~VeDnG~Gi~~~ 527 (574)
T COG3850 486 VREALSNA------IKHA------------QASEIKVTVSQNDGQVTLTVEDNGVGIDEA 527 (574)
T ss_pred HHHHHHHH------HHhc------------ccCeEEEEEEecCCeEEEEEeeCCcCCCCc
Confidence 56767777 8876 356889999988899999999999999986
>PRK03660 anti-sigma F factor; Provisional
Back Show alignment and domain information
Probab=97.06 E-value=0.0029 Score=44.50 Aligned_cols=46 Identities=20% Similarity=0.372 Sum_probs=34.6
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
.+.|++.|| +++.... ..++.+.|.+...++.+.++|.|+|.||++
T Consensus 43 ~l~eli~Na------i~h~~~~--------~~~~~i~i~~~~~~~~l~i~I~D~G~g~~~ 88 (146)
T PRK03660 43 AVSEAVTNA------IIHGYEN--------NPDGVVYIEVEIEEEELEITVRDEGKGIED 88 (146)
T ss_pred HHHHHHHHH------HHHhcCC--------CCCCEEEEEEEECCCEEEEEEEEccCCCCh
Confidence 356788888 5553210 123678898888888999999999999986
>PRK13559 hypothetical protein; Provisional
Back Show alignment and domain information
Probab=96.99 E-value=0.00088 Score=53.24 Aligned_cols=48 Identities=25% Similarity=0.322 Sum_probs=37.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEE--EEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRI--STDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i--~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
++||+.|| +||.... +.+|.++|.+ ...++.+.+.+.|+|.|++++..
T Consensus 272 l~nLi~NA------~k~~~~~--------~~~g~i~v~~~~~~~~~~~~i~v~d~G~~~~~~~~ 321 (361)
T PRK13559 272 LHELAVNA------IKHGALS--------ADQGRISISWKPSPEGAGFRIDWQEQGGPTPPKLA 321 (361)
T ss_pred HHHHHHhH------HHhcccc--------CCCcEEEEEEEecCCCCeEEEEEECCCCCCCCCCC
Confidence 55699999 8885321 4578899988 55677899999999999987643
>COG4585 Signal transduction histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=96.94 E-value=0.0014 Score=53.07 Aligned_cols=44 Identities=18% Similarity=0.436 Sum_probs=37.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
++|-+.|+ +|++ ....+.|++...++.++++|+|||.|.+.+..
T Consensus 284 vQEaltN~------~rHa------------~A~~v~V~l~~~~~~l~l~V~DnG~Gf~~~~~ 327 (365)
T COG4585 284 VQEALTNA------IRHA------------QATEVRVTLERTDDELRLEVIDNGVGFDPDKE 327 (365)
T ss_pred HHHHHHHH------Hhcc------------CCceEEEEEEEcCCEEEEEEEECCcCCCcccc
Confidence 56777888 8886 34678999999999999999999999998876
>COG4192 Signal transduction histidine kinase regulating phosphoglycerate transport system [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=96.90 E-value=0.0027 Score=54.90 Aligned_cols=85 Identities=18% Similarity=0.195 Sum_probs=58.4
Q ss_pred ccccceeEehhhhhhhHHHHhh--------------------hhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCC
Q psy15895 20 NDNAEKHEFQAETRMLLDIVAK--------------------SLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTD 79 (124)
Q Consensus 20 ~~~~e~~~f~~ei~~~l~ll~~--------------------~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam 79 (124)
++...+.++...+.+...++.. +-.+-.+|++| ++-||.|||..
T Consensus 519 ~~~lqpV~L~~~v~~AweLl~~khk~rQ~~Li~ptD~~~V~gd~v~ieQVlvN-l~~NaldA~~h--------------- 582 (673)
T COG4192 519 DESLQPVRLNSVVEQAWELLQTKHKRRQIKLINPTDDLMVMGDAVSIEQVLVN-LIVNALDASTH--------------- 582 (673)
T ss_pred CCCcccccHHHHHHHHHHHHHhhhhhccccccCCcccceecchhhhHHHHHHH-HHHHHHhhhcc---------------
Confidence 3445666777666666666542 00111467888 99999999864
Q ss_pred CCCCeEEEEEEE-cCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 80 HDHGKLEIRIST-DKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 80 ~~~g~i~I~i~~-~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
..+.|++.... +.+...|.|.|||.|-|.+-+ ..|.+|..|
T Consensus 583 -~~p~i~~~~~~~~~e~l~i~i~DnGqGwp~~l~-dkLl~PFtt 624 (673)
T COG4192 583 -FAPWIKLIALGTEQEMLRIAIIDNGQGWPHELV-DKLLTPFTT 624 (673)
T ss_pred -CCceEEEEeecCcccceEEEEecCCCCCchhHH-HHhcCCccc
Confidence 23677877765 556799999999999999999 455555443
>smart00433 TOP2c TopoisomeraseII
Back Show alignment and domain information
Probab=96.81 E-value=0.00087 Score=58.72 Aligned_cols=44 Identities=23% Similarity=0.423 Sum_probs=31.6
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|||.||+|+... .....|.|.+..++ .|+|.|||.|||.+..
T Consensus 6 v~ElvdNAiD~~~~---------------g~at~I~V~i~~~g---~I~V~DnG~GIp~~~h 49 (594)
T smart00433 6 VDEIVDNAADEALA---------------GYMDTIKVTIDKDN---SISVEDNGRGIPVEIH 49 (594)
T ss_pred Eeeehhcccchhcc---------------CCCCEEEEEEeCCC---eEEEEEeCCceeCCcc
Confidence 34799999888743 12456677766543 9999999999996543
Eukaryotic DNA topoisomerase II, GyrB, ParE
>PRK05644 gyrB DNA gyrase subunit B; Validated
Back Show alignment and domain information
Probab=96.62 E-value=0.0012 Score=58.29 Aligned_cols=43 Identities=23% Similarity=0.437 Sum_probs=30.8
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|||.||+|.... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 41 ~v~ElvdNaiDe~~a---------------g~a~~I~V~i~~~g---~I~V~DnG~GIp~~ 83 (638)
T PRK05644 41 LVYEIVDNSIDEALA---------------GYCDHIEVTINEDG---SITVTDNGRGIPVD 83 (638)
T ss_pred hhHHhhhcccccccC---------------CCCCEEEEEEeCCC---cEEEEEeCccccCC
Confidence 467899999764321 12356777776543 89999999999986
>TIGR01055 parE_Gneg DNA topoisomerase IV, B subunit, proteobacterial
Back Show alignment and domain information
Probab=96.45 E-value=0.003 Score=55.74 Aligned_cols=45 Identities=18% Similarity=0.278 Sum_probs=31.1
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-.+.|||.||+|-... .....|.|.+.. + ..|+|.|||.|||.+.
T Consensus 33 ~lv~ElvdNsiDE~~a---------------g~a~~I~V~i~~--d-~~I~V~DnGrGIp~~~ 77 (625)
T TIGR01055 33 HLVQEVIDNSVDEALA---------------GFASIIMVILHQ--D-QSIEVFDNGRGMPVDI 77 (625)
T ss_pred eeehhhhhcccchhhc---------------CCCCEEEEEEeC--C-CeEEEEecCCccCccc
Confidence 3467899999662221 123456666643 3 6899999999999887
This protein is active as an alpha(2)beta(2) heterotetramer.
>TIGR01059 gyrB DNA gyrase, B subunit
Back Show alignment and domain information
Probab=96.39 E-value=0.0026 Score=56.36 Aligned_cols=43 Identities=21% Similarity=0.417 Sum_probs=30.1
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|||.||+|-... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 34 vv~Elv~NaiDe~~a---------------g~a~~I~V~i~~~g---~I~V~DnG~GIp~~ 76 (654)
T TIGR01059 34 LVYEVVDNSIDEAMA---------------GYCDTINVTINDDG---SVTVEDNGRGIPVD 76 (654)
T ss_pred hhHHhhhcccccccc---------------CCCCEEEEEEeCCC---cEEEEEeCCCcCcc
Confidence 466899999663321 12456777776433 39999999999986
This model describes the common type II DNA topoisomerase (DNA gyrase). Two apparently independently arising families, one in the Proteobacteria and one in Gram-positive lineages, are both designated toposisomerase IV. Proteins scoring above the noise cutoff for this model and below the trusted cutoff for topoisomerase IV models probably should be designated GyrB.
>KOG0787|consensus
Back Show alignment and domain information
Probab=96.21 E-value=0.014 Score=48.96 Aligned_cols=63 Identities=17% Similarity=0.287 Sum_probs=48.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S~ 123 (124)
+-||+.||+.|.-+..-.. +.+-+.|+|.+...+....|.|+|-|=|++..++ ++++....|.
T Consensus 265 lfElfKNamrATve~h~~~---------~~~~ppI~V~V~~gdeDl~ikISDrGGGV~~~~~-drlf~Y~yST 327 (414)
T KOG0787|consen 265 LFELFKNAMRATVEHHGDD---------GDELPPIKVTVAKGDEDLLIKISDRGGGVPHRDI-DRLFSYMYST 327 (414)
T ss_pred HHHHHHHHHHHHHHHhccC---------CCCCCCeEEEEecCCcceEEEEecCCCCcChhHH-HHHHhhhccc
Confidence 4579999999985422111 1235679999999999999999999999999999 7777766664
>COG2172 RsbW Anti-sigma regulatory factor (Ser/Thr protein kinase) [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=96.06 E-value=0.031 Score=40.75 Aligned_cols=48 Identities=23% Similarity=0.397 Sum_probs=37.0
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
+.+-|++.|+ +++.--.. ++.|.|.|....+++...++|+|.|.|+..
T Consensus 43 ~av~E~~~N~------v~Ha~~~~-------~~~g~I~i~~~~~~~~~~i~i~D~G~~~~~ 90 (146)
T COG2172 43 IAVSEALTNA------VKHAYKLD-------PSEGEIRIEVSLDDGKLEIRIWDQGPGIED 90 (146)
T ss_pred HHHHHHHHHH------HHHHhhcC-------CCCceEEEEEEEcCCeEEEEEEeCCCCCCC
Confidence 3466788898 66653221 345899999999999999999999988754
>PRK14939 gyrB DNA gyrase subunit B; Provisional
Back Show alignment and domain information
Probab=95.71 E-value=0.0072 Score=54.55 Aligned_cols=43 Identities=21% Similarity=0.428 Sum_probs=29.6
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
.+.|++.||+|-... .....|.|.+..++ .|+|+|||.|||.+
T Consensus 41 lv~EivdNaiDE~~A---------------G~a~~I~V~i~~dg---sIsV~DnGrGIPvd 83 (756)
T PRK14939 41 MVYEVVDNAIDEALA---------------GHCDDITVTIHADG---SVSVSDNGRGIPTD 83 (756)
T ss_pred hhhHhhccccccccc---------------CCCCEEEEEEcCCC---eEEEEEcCCcccCC
Confidence 356799999652211 11356677766543 89999999999987
>COG3275 LytS Putative regulator of cell autolysis [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=95.22 E-value=0.081 Score=45.90 Aligned_cols=74 Identities=16% Similarity=0.318 Sum_probs=54.3
Q ss_pred cceeEehhhhhhhHHHHh--hhhcCcH-----------------HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCC
Q psy15895 23 AEKHEFQAETRMLLDIVA--KSLYSDK-----------------EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~--~~~y~~~-----------------~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g 83 (124)
.+.+.+..|++++...+. +.-+.++ ...+.-|+.|| +|+...+. .+.+
T Consensus 414 ~~~v~L~kEl~~v~AYl~IEkARF~~rL~v~i~id~~l~~~~iP~filQPLVENA------IKHG~~~~-------~~~g 480 (557)
T COG3275 414 QEIVTLSKELEHVNAYLSIEKARFGDRLDVVIDIDEELRQVQIPSFILQPLVENA------IKHGISQL-------KDTG 480 (557)
T ss_pred ceEeehHHHHHHHHHHHHHHHHhcCCceEEEEecCHHHhhccCchhhhhHHHHHH------HHhcccch-------hcCC
Confidence 467778888888776653 3334332 12345588999 77764331 4678
Q ss_pred eEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 84 KLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 84 ~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
.++|.+..+++.+.+.|+|||-|+++
T Consensus 481 ~V~I~V~~~d~~l~i~VeDng~li~p 506 (557)
T COG3275 481 RVTISVEKEDADLRIEVEDNGGLIQP 506 (557)
T ss_pred ceEEEEEEeCCeEEEEEecCCCCcCC
Confidence 99999999999999999999999988
>COG3851 UhpB Signal transduction histidine kinase, glucose-6-phosphate specific [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=94.63 E-value=0.062 Score=45.47 Aligned_cols=29 Identities=21% Similarity=0.430 Sum_probs=26.1
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
...++|.+..++..+.++|+|||.|+|..
T Consensus 428 AS~V~i~l~~~~e~l~Lei~DdG~Gl~~~ 456 (497)
T COG3851 428 ASAVTIQLWQQDERLMLEIEDDGSGLPPG 456 (497)
T ss_pred cceEEEEEeeCCcEEEEEEecCCcCCCCC
Confidence 45789999999999999999999999976
>TIGR01058 parE_Gpos DNA topoisomerase IV, B subunit, Gram-positive
Back Show alignment and domain information
Probab=94.41 E-value=0.051 Score=48.25 Aligned_cols=42 Identities=21% Similarity=0.438 Sum_probs=29.1
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+.|+|.||+|-... .....|.|.+..+ -.|+|.|||-|||.+
T Consensus 39 v~EIvdNavDE~~a---------------g~~~~I~V~i~~d---gsitV~DnGrGIPv~ 80 (637)
T TIGR01058 39 VWEIVDNSVDEVLA---------------GYADNITVTLHKD---NSITVQDDGRGIPTG 80 (637)
T ss_pred hhhhhcchhhhhhc---------------CCCcEEEEEEcCC---CeEEEEECCCcccCc
Confidence 55799999664322 2245666666533 389999999999974
Operationally, topoisomerase IV is a type II topoisomerase required for the decatenation step of chromosome segregation. Not every bacterium has both a topo II and a topo IV. The topo IV families of the Gram-positive bacteria and the Gram-negative bacteria appear not to represent a single clade among the type II topoisomerases, and are represented by separate models for this reason.
>KOG1978|consensus
Back Show alignment and domain information
Probab=93.47 E-value=0.083 Score=47.11 Aligned_cols=50 Identities=20% Similarity=0.426 Sum_probs=33.4
Q ss_pred hcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 43 LYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 43 ~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+-.+....++||+.|++||=. ..|.|.+. +-+--.|+|+|||+||++.+.
T Consensus 17 vI~sl~sAVKELvENSiDAGA-------------------T~I~I~~k-dyG~d~IEV~DNG~GI~~~n~ 66 (672)
T KOG1978|consen 17 VITSLVSAVKELVENSIDAGA-------------------TAIDIKVK-DYGSDSIEVSDNGSGISATDF 66 (672)
T ss_pred eeccHHHHHHHHHhcCcccCC-------------------ceeeEecC-CCCcceEEEecCCCCCCccch
Confidence 333444668899999954321 22333332 336789999999999998766
>KOG1977|consensus
Back Show alignment and domain information
Probab=93.40 E-value=0.083 Score=48.03 Aligned_cols=33 Identities=21% Similarity=0.484 Sum_probs=25.3
Q ss_pred EEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 86 EIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 86 ~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
.|.+..+-....+.|.|+|.||..+++ +.||+=
T Consensus 40 ~V~v~V~~~t~sv~ViDdG~G~~rdDl-~~lg~r 72 (1142)
T KOG1977|consen 40 CVAVRVNMETFSVQVIDDGFGMGRDDL-EKLGNR 72 (1142)
T ss_pred EEEEEecCceeEEEEEecCCCccHHHH-HHHHhh
Confidence 455555556788899999999999999 666653
>PF14501 HATPase_c_5: GHKL domain
Back Show alignment and domain information
Probab=92.57 E-value=0.68 Score=30.71 Aligned_cols=41 Identities=24% Similarity=0.345 Sum_probs=30.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGI 105 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGi 105 (124)
+-+|++||++|+.+. +..+.|.|.+...++.+.|.|+..-.
T Consensus 10 l~nlldNAiea~~~~--------------~~~~~I~i~~~~~~~~~~i~i~N~~~ 50 (100)
T PF14501_consen 10 LGNLLDNAIEACKKY--------------EDKRFISISIREENGFLVIIIENSCE 50 (100)
T ss_pred HHHHHHHHHHHHHhc--------------CCCcEEEEEEEecCCEEEEEEEECCC
Confidence 334999998887551 12677888888888888888886643
>PLN03128 DNA topoisomerase 2; Provisional
Back Show alignment and domain information
Probab=92.10 E-value=0.3 Score=46.17 Aligned_cols=45 Identities=20% Similarity=0.385 Sum_probs=29.5
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+-|+|.||.|-...- +....|.|.+. .+.-.|+|.|||-|||-+.
T Consensus 57 ~dEIldNAvDe~~~~--------------g~~~~I~V~i~--~~dgsIsV~DnGrGIPv~i 101 (1135)
T PLN03128 57 FDEILVNAADNKQRD--------------PSMDSLKVDID--VEQNTISVYNNGKGIPVEI 101 (1135)
T ss_pred HHHHHHHHHHHhhhc--------------CCCcEEEEEEE--cCCCeEEEEecCccccCCC
Confidence 456999997654210 22344555554 4445899999999999753
>PLN03237 DNA topoisomerase 2; Provisional
Back Show alignment and domain information
Probab=91.83 E-value=0.29 Score=47.27 Aligned_cols=45 Identities=20% Similarity=0.431 Sum_probs=29.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.|+|.||.|-... . +....|+|.+.. +...|+|.|||-|||-+.
T Consensus 82 fdEIldNAvDe~~r---~-----------g~~~~I~V~I~~--~~gsIsV~DnGRGIPV~i 126 (1465)
T PLN03237 82 FDEILVNAADNKQR---D-----------PKMDSLRVVIDV--EQNLISVYNNGDGVPVEI 126 (1465)
T ss_pred HHHHhhhhHhHHhh---c-----------CCCCEEEEEEEc--CCCEEEEEecCccccCCC
Confidence 56799999765421 0 223455555554 445799999999999753
>PTZ00108 DNA topoisomerase 2-like protein; Provisional
Back Show alignment and domain information
Probab=91.53 E-value=0.31 Score=46.91 Aligned_cols=48 Identities=23% Similarity=0.381 Sum_probs=29.7
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+-|+|.||.|-.. +-. .. +....|+|.+ +.+.-.|+|.|||-|||-+.
T Consensus 62 ~dEIldNAvDe~~--r~~-----~~----g~~~~I~V~i--~~d~g~IsV~dnGrGIPv~~ 109 (1388)
T PTZ00108 62 FDEILVNAADNKA--RDK-----GG----HRMTYIKVTI--DEENGEISVYNDGEGIPVQI 109 (1388)
T ss_pred HHHHhhhhhhhhc--ccC-----CC----CCccEEEEEE--eccCCeEEEEecCCcccCCC
Confidence 4569999976542 110 00 1234455555 44555799999999999754
>PHA02569 39 DNA topoisomerase II large subunit; Provisional
Back Show alignment and domain information
Probab=91.15 E-value=0.32 Score=43.05 Aligned_cols=46 Identities=26% Similarity=0.460 Sum_probs=28.4
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
+.|+|.||.|-... . +. .....|.|.+. .-.|+|.|||-|||-+.-
T Consensus 50 ~~EIldNavDe~~~---~----~~-----g~~~~I~V~i~----dgsisV~dnGrGIPv~~h 95 (602)
T PHA02569 50 IDEIIDNSVDEAIR---T----NF-----KFANKIDVTIK----NNQVTVSDNGRGIPQAMV 95 (602)
T ss_pred eehhhhhhhhhhhc---c----CC-----CCCcEEEEEEc----CCEEEEEECCCcccCCcc
Confidence 34699999764321 0 00 01344555554 457999999999997654
>COG4564 Signal transduction histidine kinase [Signal transduction mechanisms]
Back Show alignment and domain information
Probab=90.43 E-value=0.87 Score=38.35 Aligned_cols=35 Identities=17% Similarity=0.284 Sum_probs=29.3
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
..++.|.....++.+++.|.|||.|.+.+......
T Consensus 377 Atrv~ill~~~~d~vql~vrDnG~GF~~~~~~~~~ 411 (459)
T COG4564 377 ATRVTILLQQMGDMVQLMVRDNGVGFSVKEALQKR 411 (459)
T ss_pred CeEEEEEeccCCcceEEEEecCCCCccchhhccCc
Confidence 45788888889999999999999999987775444
>PTZ00109 DNA gyrase subunit b; Provisional
Back Show alignment and domain information
Probab=90.41 E-value=0.14 Score=47.21 Aligned_cols=28 Identities=21% Similarity=0.376 Sum_probs=20.2
Q ss_pred CCeEEEEEEEcCCceEEEEEEcCCCCCHHHH
Q psy15895 82 HGKLEIRISTDKQNRILTIQDSGIGMTKEEL 112 (124)
Q Consensus 82 ~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l 112 (124)
...|.|.+..+ -.|+|+|||-|||-+.-
T Consensus 150 ~~~I~V~i~~D---gsItV~DnGRGIPvd~h 177 (903)
T PTZ00109 150 CNKITVVLHKD---GSVEISDNGRGIPCDVS 177 (903)
T ss_pred CcEEEEEEcCC---CeEEEEeCCcccccccc
Confidence 45566666442 47999999999997543
>KOG1979|consensus
Back Show alignment and domain information
Probab=89.92 E-value=0.55 Score=41.76 Aligned_cols=28 Identities=32% Similarity=0.596 Sum_probs=22.0
Q ss_pred EEEEE-EcCCceEEEEEEcCCCCCHHHHH
Q psy15895 86 EIRIS-TDKQNRILTIQDSGIGMTKEELK 113 (124)
Q Consensus 86 ~I~i~-~~~~~~~I~I~DnGiGM~~e~l~ 113 (124)
.|.+. .+++-..+.|+|||-||-+++++
T Consensus 46 ~I~V~vk~GGLKLlQisDnG~GI~reDl~ 74 (694)
T KOG1979|consen 46 SIDVLVKDGGLKLLQISDNGSGIRREDLP 74 (694)
T ss_pred eEEEEEecCCeEEEEEecCCCccchhhhH
Confidence 44554 46667888899999999999984
>COG0187 GyrB Type IIA topoisomerase (DNA gyrase/topo II, topoisomerase IV), B subunit [DNA replication, recombination, and repair]
Back Show alignment and domain information
Probab=89.58 E-value=0.34 Score=43.12 Aligned_cols=42 Identities=14% Similarity=0.375 Sum_probs=28.5
Q ss_pred HHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 52 RELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 52 ~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
-|+++||+|-.-. .-...|.|.+. ..-.|+|.|||=|||-+.
T Consensus 42 ~EVvDNsiDEala---------------G~~~~I~V~l~---~d~sisV~DnGRGIPvdi 83 (635)
T COG0187 42 WEVVDNSIDEALA---------------GYADRIDVTLH---EDGSISVEDNGRGIPVDI 83 (635)
T ss_pred eEeeechHhHHhh---------------CcCcEEEEEEc---CCCeEEEEECCCCCcccc
Confidence 3588999654322 12345666665 456899999999999766
>COG5381 Uncharacterized protein conserved in bacteria [Function unknown]
Back Show alignment and domain information
Probab=81.94 E-value=3.9 Score=30.65 Aligned_cols=49 Identities=22% Similarity=0.285 Sum_probs=36.9
Q ss_pred HHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhc
Q psy15895 50 FIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNL 116 (124)
Q Consensus 50 ~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l 116 (124)
..||||.|| +||. ..|+|.|+.+.......+.+..--.+-+..+.++.|
T Consensus 67 l~NELiENA------VKfr------------a~geIvieasl~s~~f~~kvsN~vd~~t~~~f~~ll 115 (184)
T COG5381 67 LANELIENA------VKFR------------ATGEIVIEASLYSHKFIFKVSNIVDLPTTIDFENLL 115 (184)
T ss_pred HHHHHHHhh------hccc------------CCCcEEEEEEeccceEEEEecccCCCccHHHHHHHH
Confidence 368999999 8885 467999999988888887777666666666664444
Homologous Structure Domains
Structure Domains Detected by RPS-BLAST
Original result of RPS-BLAST against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
E-value Query 124
d2gqpa1 227
d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris)
1e-33 d2iwxa1 213
d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharo
3e-29 d1uyla_ 208
d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId:
7e-29 d2hkja3 219
d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {A
0.004
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]} Length = 227
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Dog (Canis familiaris) [TaxId: 9615]
Score = 114 bits (287), Expect = 1e-33
Identities = 47/101 (46%), Positives = 70/101 (69%), Gaps = 3/101 (2%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
EK FQAE ++ ++ SLY +KE+F+RELISNASDAL+K+R L++ +
Sbjct: 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTD---ENALAGNE 57
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
+L ++I DK+ +L + D+G+GMT+EEL NLGTIA+SG+
Sbjct: 58 ELTVKIKCDKEKNLLHVTDTGVGMTREELVKNLGTIAKSGT 98
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]} Length = 213
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Score = 103 bits (257), Expect = 3e-29
Identities = 54/102 (52%), Positives = 75/102 (73%), Gaps = 3/102 (2%)
Query: 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDH 82
+E EFQAE L+ ++ ++YS+KE+F+RELISNASDAL+K+RY LS+ T+ D
Sbjct: 2 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQLETEPD- 60
Query: 83 GKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSGS 124
L IRI+ + ++L I+DSGIGMTK EL +NLGTIA+SG+
Sbjct: 61 --LFIRITPKPEQKVLEIRDSGIGMTKAELINNLGTIAKSGT 100
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]} Length = 208
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]
Score = 102 bits (254), Expect = 7e-29
Identities = 49/100 (49%), Positives = 70/100 (70%), Gaps = 3/100 (3%)
Query: 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHG 83
E FQAE L+ ++ + YS+KE+F+RELISN+SDAL+K+RY L++ + +
Sbjct: 2 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKLDSGKE-- 59
Query: 84 KLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARSG 123
L I + +KQ+R LTI D+GIGMTK +L +NLGTIA+SG
Sbjct: 60 -LHINLIPNKQDRTLTIVDTGIGMTKADLINNLGTIAKSG 98
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]} Length = 219
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase VI-B subunit
species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Score = 33.3 bits (75), Expect = 0.004
Identities = 20/97 (20%), Positives = 36/97 (37%), Gaps = 17/97 (17%)
Query: 27 EFQAETRMLL--DIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGK 84
EF L A++LY +RELI N+ DA + ++ D
Sbjct: 5 EFFKRNPELAGFPNPARALYQ----TVRELIENSLDATDVHGILPNIKITIDLIDDARQI 60
Query: 85 LEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121
++ + D+GIG+ +E+ + G +
Sbjct: 61 YKV-----------NVVDNGIGIPPQEVPNAFGRVLY 86
Homologous Domains Detected by HHsearch
Original result of HHsearch against SCOP70(version1.75) database
ID Alignment Graph Length
Definition
Probability Query 124
d2gqpa1 227
HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
99.93 d1uyla_ 208
HSP90 {Human (Homo sapiens) [TaxId: 9606]}
99.92 d2iwxa1 213
HSP90 {Baker's yeast (Saccharomyces cerevisiae) [T
99.92 d1y8oa2 125
Pyruvate dehydrogenase kinase {Human (Homo sapiens
99.04 d1ysra1 148
Sensor-type histidine kinase PrrB {Mycobacterium t
98.99 d2c2aa2 161
Sensor histidine kinase TM0853 {Thermotoga maritim
98.91 d1bxda_ 161
Histidine kinase domain of the osmosensor EnvZ {Es
98.88 d1gkza2 193
Branched-chain alpha-ketoacid dehydrogenase kinase
98.85 d1id0a_ 146
Histidine kinase PhoQ domain {Escherichia coli [Ta
98.77 d1jm6a2 190
Pyruvate dehydrogenase kinase {Rat (Rattus norvegi
98.75 d1ixma_ 179
Sporulation response regulatory protein Spo0B {Bac
98.75 d2hkja3 219
Topoisomerase VI-B subunit {Archaeon Sulfolobus sh
98.7 d1r62a_ 156
Nitrogen regulation protein NtrB, C-terminal domai
98.41 d1h7sa2 203
DNA mismatch repair protein PMS2 {Human (Homo sapi
98.33 d1b63a2 218
DNA mismatch repair protein MutL {Escherichia coli
98.22 d1th8a_ 139
Anti-sigma factor spoIIab {Bacillus stearothermoph
98.13 d1s14a_ 168
Topoisomerase IV subunit B {Escherichia coli [TaxI
96.23 d1pvga2 239
DNA topoisomerase II {Baker's yeast (Saccharomyces
96.2 d1kija2 212
DNA gyrase B {Thermus thermophilus [TaxId: 274]}
95.58 d1ei1a2 219
DNA gyrase B {Escherichia coli [TaxId: 562]}
94.42
>d2gqpa1 d.122.1.1 (A:74-337) HSP90 {Dog (Canis familiaris) [TaxId: 9615]}
Back Hide information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Dog (Canis familiaris) [TaxId: 9615]
Probab=99.93 E-value=2.9e-26 Score=175.07 Aligned_cols=98 Identities=48% Similarity=0.784 Sum_probs=82.2
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
|++.||+++.++++++.+++|+++.||+|||||||.|||.++|+..+..... +.....+.|.+..+++..+|+|+||
T Consensus 1 e~~~Fq~e~~~ll~ll~~sLYs~~~iflRELiqNA~DA~~k~r~~~~~~~~~---~~~~~~~~i~i~~d~~~~~l~i~Dn 77 (227)
T d2gqpa1 1 EKFAFQAEVNRMMKLIINSLYKNKEIFLRELISNASDALDKIRLISLTDENA---LAGNEELTVKIKCDKEKNLLHVTDT 77 (227)
T ss_dssp TEECCCHHHHHHHHHHHHHTTTCTTHHHHHHHHHHHHHHHHHHHHHHHCTTT---TTTCCCCCEEEEEETTTTEEEEEEC
T ss_pred CceeeehhHHHHHHHHHhcccCCCchhHHHHHhhHHHHHHHHHHHhccCccc---ccccchhhhhcccCCCCcEEEEEec
Confidence 5789999999999999999999999999999999999999998876553321 1335567888888999999999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 78 GiGMt~~e~~~~lgtIa~Sgt 98 (227)
T d2gqpa1 78 GVGMTREELVKNLGTIAKSGT 98 (227)
T ss_dssp SCCCCHHHHHHHHHCC-----
T ss_pred CccccHHHHHHHHHHHhhcch
Confidence 999999999999999999985
>d1uyla_ d.122.1.1 (A:) HSP90 {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.92 E-value=3.8e-26 Score=172.23 Aligned_cols=98 Identities=50% Similarity=0.813 Sum_probs=85.5
Q ss_pred ceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEc
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDS 103 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~Dn 103 (124)
|++.||+|+.+++++|.+++|+++.||+|||||||.|||.++++..+..+... ...+.+.|++..+++..+|+|+||
T Consensus 2 e~~~Fq~e~~~ll~ll~~slYs~~~iflRELIqNa~DA~~k~~~~~~~~~~~~---~~~~~~~i~i~~d~~~~~l~I~Dn 78 (208)
T d1uyla_ 2 ETFAFQAEIAQLMSLIINTFYSNKEIFLRELISNSSDALDKIRYESLTDPSKL---DSGKELHINLIPNKQDRTLTIVDT 78 (208)
T ss_dssp EEEECCHHHHHHHHHHHHSCCSCTTHHHHHHHHHHHHHHHHHHHHHHHCGGGG---TTCCCCCEEEEEETTTTEEEEEEC
T ss_pred cceeehHHHHHHHHHHHHhhcCCchHhHHHHHhhHHHHHHHHHHHhcCCchhc---cCCcccceEEeecCCccEEEEEcC
Confidence 68999999999999999999999999999999999999998887654432211 245566788888999999999999
Q ss_pred CCCCCHHHHHhhccccccCCC
Q psy15895 104 GIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 104 GiGM~~e~l~~~l~~i~~S~~ 124 (124)
|+||+++++.++||+||+||+
T Consensus 79 GiGMt~~el~~~LgtIa~Sg~ 99 (208)
T d1uyla_ 79 GIGMTKADLINNLGTIAKSGT 99 (208)
T ss_dssp SCCCCHHHHHTGGGSCHHHHH
T ss_pred CccccHHHHHhhcccccccch
Confidence 999999999999999999984
>d2iwxa1 d.122.1.1 (A:2-214) HSP90 {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Heat shock protein 90, HSP90, N-terminal domain
domain: HSP90
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=99.92 E-value=1.4e-25 Score=169.91 Aligned_cols=99 Identities=53% Similarity=0.810 Sum_probs=87.9
Q ss_pred cceeEehhhhhhhHHHHhhhhcCcHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEE
Q psy15895 23 AEKHEFQAETRMLLDIVAKSLYSDKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQD 102 (124)
Q Consensus 23 ~e~~~f~~ei~~~l~ll~~~~y~~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~D 102 (124)
.+++.||+++.+++++|.+++|+++.||+|||||||.|||.++++..+..+.. ....+.+.|.+..+++..+|+|.|
T Consensus 2 ~e~~~Fqae~~~ll~ll~~~lYs~~~iflRELiqNa~DA~~~~~~~~~~~~~~---~~~~~~~~I~i~~d~~~~~l~i~D 78 (213)
T d2iwxa1 2 SETFEFQAEITQLMSLIINTVYSNKEIFLRELISNASDALDKIRYKSLSDPKQ---LETEPDLFIRITPKPEQKVLEIRD 78 (213)
T ss_dssp CEEEECCHHHHHHHHHHHHCCCSCTTHHHHHHHHHHHHHHHHHHHHTTTCGGG---GTTSCCCCEEEEEEGGGTEEEEEE
T ss_pred CccEeehhhHHHHHHHHHHhhcCCchHHHHHHHHhHHHHHHHHHHhhccCccc---ccCCcccccccccccccceeEEec
Confidence 57899999999999999999999999999999999999999988876543321 134567888999999999999999
Q ss_pred cCCCCCHHHHHhhccccccCCC
Q psy15895 103 SGIGMTKEELKSNLGTIARSGS 124 (124)
Q Consensus 103 nGiGM~~e~l~~~l~~i~~S~~ 124 (124)
||+||+++++.++|++||+||+
T Consensus 79 nGiGMt~~~~~~~l~~ia~S~~ 100 (213)
T d2iwxa1 79 SGIGMTKAELINNLGTIAKSGT 100 (213)
T ss_dssp CSSCCCHHHHHHHHTTCCCSTH
T ss_pred CCccccHHHHHHHHhhhhcccc
Confidence 9999999999999999999984
>d1y8oa2 d.122.1.4 (A:177-301) Pyruvate dehydrogenase kinase {Human (Homo sapiens) [TaxId: 9606]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Human (Homo sapiens) [TaxId: 9606]
Probab=99.04 E-value=2.7e-10 Score=75.32 Aligned_cols=58 Identities=16% Similarity=0.232 Sum_probs=44.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhh
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSN 115 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~ 115 (124)
+++.| |+.||.+++.. ++.. .. ...+.+.|.+...++.+.|+|+|||+|||++++++-
T Consensus 67 qvl~N-Ll~NAi~~~~~-~~~~-----~~---~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~~~I 124 (125)
T d1y8oa2 67 HMLFE-LFKNSMRATVE-LYED-----RK---EGYPAVKTLVTLGKEDLSIKISDLGGGVPLRKIDRL 124 (125)
T ss_dssp HHHHH-HHHHHHHHHHH-HHTT-----CS---SCCCCEEEEEEECSSEEEEEEEECSCCCCHHHHGGG
T ss_pred HHHHH-HHHHHHHhhhc-cccc-----cC---CCceeEEEEeecCCCEEEEEEEEeCCCcCHHHHccc
Confidence 45666 99999777643 1111 00 356789999999999999999999999999999543
>d1ysra1 d.122.1.3 (A:299-446) Sensor-type histidine kinase PrrB {Mycobacterium tuberculosis [TaxId: 1773]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor-type histidine kinase PrrB
species: Mycobacterium tuberculosis [TaxId: 1773]
Probab=98.99 E-value=1.1e-09 Score=76.50 Aligned_cols=51 Identities=16% Similarity=0.234 Sum_probs=41.9
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+.+||+|| +||. + .+.|.|.+...++.+.|+|+|||+|||++++. ++++++
T Consensus 49 l~NLl~NA------iky~-----------~-~~~I~i~~~~~~~~~~i~V~D~G~Gi~~~~~~-~ife~f 99 (148)
T d1ysra1 49 VDNAIANA------VKHG-----------G-ATLVQLSAVSSRAGVEIAIDDNGSGVPEGERQ-VVFERF 99 (148)
T ss_dssp HHHHHHHH------HHTT-----------C-CSEEEEEEEEETTEEEEEEEESSSCCCGGGHH-HHHTSC
T ss_pred HHHHHHHH------HHhc-----------C-CcEEEEEEEecCCEEEEEEEEcCCCCCHHHHH-HhcCcc
Confidence 34499999 8986 2 46899999999999999999999999999995 444443
>d2c2aa2 d.122.1.3 (A:321-481) Sensor histidine kinase TM0853 {Thermotoga maritima [TaxId: 2336]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Sensor histidine kinase TM0853
species: Thermotoga maritima [TaxId: 2336]
Probab=98.91 E-value=1.5e-09 Score=76.58 Aligned_cols=57 Identities=14% Similarity=0.378 Sum_probs=43.1
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIA 120 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~ 120 (124)
+|+.| ||.|| +||+.-. .....+.+.+...++.+.|+|.|||+|||++++ ++++++.
T Consensus 52 qvl~N-Li~NA------ik~t~~~--------~~~~~i~i~~~~~~~~~~i~V~D~G~GI~~~~~-~~iF~~F 108 (161)
T d2c2aa2 52 QVLLN-LLNNG------VKYSKKD--------APDKYVKVILDEKDGGVLIIVEDNGIGIPDHAK-DRIFEQF 108 (161)
T ss_dssp HHHHH-HHHHH------HHTCCTT--------CTTCEEEEEEEEETTEEEEEEEECSSCCCGGGT-TGGGSTT
T ss_pred HHHHH-HHHHH------HHhhhcC--------CCcceeeEEEEecCCEEEEEEEEcCCCCCHHHH-HHhhCCc
Confidence 45555 99999 8998310 112368888888889999999999999999999 5555544
>d1bxda_ d.122.1.3 (A:) Histidine kinase domain of the osmosensor EnvZ {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Histidine kinase domain of the osmosensor EnvZ
species: Escherichia coli [TaxId: 562]
Probab=98.88 E-value=1.4e-09 Score=76.92 Aligned_cols=52 Identities=21% Similarity=0.366 Sum_probs=42.8
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
++.| ||+|| +||. ++.++|.+..+++.+.|+|+|||+||+++++ +++++++.
T Consensus 51 vl~N-Li~NA------ik~~-------------~~~i~i~~~~~~~~~~i~V~D~G~GI~~e~~-~~iF~~F~ 102 (161)
T d1bxda_ 51 AVAN-MVVNA------ARYG-------------NGWIKVSSGTEPNRAWFQVEDDGPGIAPEQR-KHLFQPFV 102 (161)
T ss_dssp HHHH-HHHHH------HTTC-------------CSCEEEEEEEETTEEEEEEEEESSCSCTTGG-GCSSCCCC
T ss_pred HHHH-HHHHH------HHhC-------------CCeEEEEEEEeCCEEEEEEEEcCCCCCHHHH-HHHhCCce
Confidence 4444 99999 8885 3578999999999999999999999999999 55655543
>d1gkza2 d.122.1.4 (A:186-378) Branched-chain alpha-ketoacid dehydrogenase kinase (BCK) {Rat (Rattus norvegicus) [TaxId: 10116]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Branched-chain alpha-ketoacid dehydrogenase kinase (BCK)
species: Rat (Rattus norvegicus) [TaxId: 10116]
Probab=98.85 E-value=2.3e-09 Score=76.88 Aligned_cols=65 Identities=18% Similarity=0.219 Sum_probs=48.3
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.+++.| ||.||++|..+ ... .. ....+.+.|.+..+++.+.|+|.|||+|||++++ +++++++.|
T Consensus 55 ~qvl~N-Ll~NAi~~t~~-~~~-----~~---~~~~~~I~i~~~~~~~~v~i~V~D~G~GI~~e~~-~~iF~~f~t 119 (193)
T d1gkza2 55 DYILPE-LLKNAMRATME-SHL-----DT---PYNVPDVVITIANNDVDLIIRISDRGGGIAHKDL-DRVMDYHFT 119 (193)
T ss_dssp HHHHHH-HHHHHHHHHHH-TCT-----TC---TTSCCCEEEEEEECSSEEEEEEECCSCCCCTTTT-TTTTSTTCC
T ss_pred HHHHHH-HHHHHHHhccc-Cce-----ee---ccccceEEEEEEccCCEEEEEEecCCCCCCHHHH-HHhcCCcee
Confidence 356666 99999655543 111 10 0245779999999999999999999999999999 667777654
>d1id0a_ d.122.1.3 (A:) Histidine kinase PhoQ domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Histidine kinase PhoQ domain
species: Escherichia coli [TaxId: 562]
Probab=98.77 E-value=8.4e-09 Score=71.75 Aligned_cols=57 Identities=18% Similarity=0.282 Sum_probs=44.6
Q ss_pred hcCcH----HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccc
Q psy15895 43 LYSDK----EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGT 118 (124)
Q Consensus 43 ~y~~~----~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~ 118 (124)
++.++ +++.| |++|| +||+ + +.++|.+...++.+.|+|.|+|+||+++++ +.+++
T Consensus 38 ~~~d~~~l~~vl~N-Ll~NA------ik~~-----------~--~~i~i~~~~~~~~~~i~V~D~G~Gi~~~~~-~~iF~ 96 (146)
T d1id0a_ 38 FVGEQNDFVEVMGN-VLDNA------CKYC-----------L--EFVEISARQTDEHLYIVVEDDGPGIPLSKR-EVIFD 96 (146)
T ss_dssp EESCHHHHHHHHHH-HHHHH------HHHC-----------S--SEEEEEEEECSSCEEEEEEESSSCCCGGGT-TGGGS
T ss_pred EEECHHHHHHHHHH-HHHHH------HHhh-----------c--CCEEEEEEeeCCEEEEEEEeeCCCCCHHHH-HHHcC
Confidence 45554 34445 99999 8987 2 358888888999999999999999999999 55555
Q ss_pred cc
Q psy15895 119 IA 120 (124)
Q Consensus 119 i~ 120 (124)
++
T Consensus 97 ~F 98 (146)
T d1id0a_ 97 RG 98 (146)
T ss_dssp CC
T ss_pred Cc
Confidence 44
>d1jm6a2 d.122.1.4 (A:1177-1366) Pyruvate dehydrogenase kinase {Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: alpha-ketoacid dehydrogenase kinase, C-terminal domain
domain: Pyruvate dehydrogenase kinase
species: Rat (Rattus norvegicus), isozyme 2 [TaxId: 10116]
Probab=98.75 E-value=1.1e-08 Score=73.81 Aligned_cols=62 Identities=15% Similarity=0.201 Sum_probs=45.0
Q ss_pred HHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccccc
Q psy15895 48 EVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTIAR 121 (124)
Q Consensus 48 ~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~ 121 (124)
+++.| |+.||.++..+-.... ...+.|+|.+..+++++.|+|+|||+|||++++ +++++++.
T Consensus 63 qvl~N-Ll~NA~~~~~~~~~~~----------~~~~~I~v~~~~~~~~~~i~V~D~G~GI~~~~~-~~iF~~f~ 124 (190)
T d1jm6a2 63 HMLFE-LFKNAMRATVESHESS----------LTLPPIKIMVALGEEDLSIKMSDRGGGVPLRKI-ERLFSYMY 124 (190)
T ss_dssp HHHHH-HHHHHHHHHHHHCSCT----------TSCCCEEEEEEECSSEEEEEEEECSCCCCGGGT-TGGGCTTC
T ss_pred HHHHH-HHHHHHHHhhccCccc----------cccceEEEEEEeCCeEEEEEEeccCCCCCHHHH-HHHhCcce
Confidence 45566 9999955543311110 234568999999999999999999999999999 56655553
>d1ixma_ d.123.1.1 (A:) Sporulation response regulatory protein Spo0B {Bacillus subtilis [TaxId: 1423]}
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class: Alpha and beta proteins (a+b)
fold: Sporulation response regulatory protein Spo0B
superfamily: Sporulation response regulatory protein Spo0B
family: Sporulation response regulatory protein Spo0B
domain: Sporulation response regulatory protein Spo0B
species: Bacillus subtilis [TaxId: 1423]
Probab=98.75 E-value=1.4e-09 Score=73.91 Aligned_cols=59 Identities=10% Similarity=0.106 Sum_probs=38.8
Q ss_pred HHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhcccc
Q psy15895 47 KEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGTI 119 (124)
Q Consensus 47 ~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~i 119 (124)
.+++.| |+.||.+|..+ +. +..+.++|++..+++++.|+|.|||+|||++.+.+-|-..
T Consensus 99 ~qvl~N-ll~NAi~~~~~--~~-----------~~~~~I~i~~~~~~~~~~i~v~D~G~gi~~e~l~~if~~~ 157 (179)
T d1ixma_ 99 AKLMRK-LFHLFDQAVSR--ES-----------ENHLTVSLQTDHPDRQLILYLDFHGAFADPSAFDDIRQNG 157 (179)
T ss_dssp HHHHHH-HHHHHHHHBCT--TS-----------CCEEEEEEECCCSSSSCEEEEEEESCBSCGGGCC------
T ss_pred HHHHHH-HHHHHHHHhhh--cc-----------ccchhhhhhhcccccEEEEEEEeCCCCcCHHHHHHHHHhc
Confidence 356666 99999444311 11 2345677777788899999999999999999994444333
>d2hkja3 d.122.1.2 (A:10-228) Topoisomerase VI-B subunit {Archaeon Sulfolobus shibatae [TaxId: 2286]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase VI-B subunit
species: Archaeon Sulfolobus shibatae [TaxId: 2286]
Probab=98.70 E-value=8.1e-09 Score=76.04 Aligned_cols=58 Identities=29% Similarity=0.434 Sum_probs=40.8
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEE---cCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRIST---DKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~---~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
++|||+||+||+..- ...+.+.|.+.. ..+.+.|.|.|||+||++++++..|...+.|
T Consensus 27 l~eLi~Naida~~~~--------------~~~~~i~i~i~~~~~~~~~~~i~V~DnG~Gi~~~~~~~~f~~~~~s 87 (219)
T d2hkja3 27 VRELIENSLDATDVH--------------GILPNIKITIDLIDDARQIYKVNVVDNGIGIPPQEVPNAFGRVLYS 87 (219)
T ss_dssp HHHHHHHHHHTTGGG--------------TCCCEEEEEEEEEETTTTEEEEEEEECSCCCCGGGHHHHHHCCCSS
T ss_pred HHHHHHHHHHHHHhC--------------CCcceEEEEEEEecCCCCEEEEEEEcCCCCCCHHHHHhhccceEec
Confidence 788999998776431 123455555542 2356789999999999999997766555544
>d1r62a_ d.122.1.3 (A:) Nitrogen regulation protein NtrB, C-terminal domain {Escherichia coli [TaxId: 562]}
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class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Nitrogen regulation protein NtrB, C-terminal domain
species: Escherichia coli [TaxId: 562]
Probab=98.41 E-value=1.5e-08 Score=70.76 Aligned_cols=31 Identities=16% Similarity=0.125 Sum_probs=14.4
Q ss_pred EcCCceEEEEEEcCCCCCHHHHHhhccccccC
Q psy15895 91 TDKQNRILTIQDSGIGMTKEELKSNLGTIARS 122 (124)
Q Consensus 91 ~~~~~~~I~I~DnGiGM~~e~l~~~l~~i~~S 122 (124)
.++..+.|.|.|||+||+++.+ +++++++.|
T Consensus 83 ~~~~~~~i~v~D~G~Gi~~~~~-~~iF~pf~s 113 (156)
T d1r62a_ 83 RYRLAARIDVEDNGPGIPPHLQ-DTLFYPMVS 113 (156)
T ss_dssp EEEEEEEEEEEEECTTC---------------
T ss_pred cCCceEEEEEecCCCCCCHHHH-Hhhccccee
Confidence 3456788999999999999999 667777665
>d1h7sa2 d.122.1.2 (A:29-231) DNA mismatch repair protein PMS2 {Human (Homo sapiens) [TaxId: 9606]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA mismatch repair protein PMS2
species: Human (Homo sapiens) [TaxId: 9606]
Probab=98.33 E-value=1.3e-07 Score=68.93 Aligned_cols=53 Identities=19% Similarity=0.373 Sum_probs=38.2
Q ss_pred cHHHHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHHHHhhccc
Q psy15895 46 DKEVFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEELKSNLGT 118 (124)
Q Consensus 46 ~~~v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~l~~~l~~ 118 (124)
++.-.++|||+||+||= ...|.|.+. +.+...|.|.|||+||+++++...+..
T Consensus 6 ~~~~~v~ELi~NsiDA~-------------------At~I~i~i~-~~g~~~i~V~DnG~Gi~~~dl~~~~~~ 58 (203)
T d1h7sa2 6 SLSTAVKELVENSLDAG-------------------ATNIDLKLK-DYGVDLIEVSDNGCGVEEENFEGLTLK 58 (203)
T ss_dssp CHHHHHHHHHHHHHHTT-------------------CSEEEEEEE-GGGTSEEEEEECSCCCCGGGSGGGGC-
T ss_pred cHHHHHHHHHHHHHcCC-------------------CCEEEEEEE-cCCEEEEEEeeCCcccCHHHhhhhhhh
Confidence 44556889999998861 235666653 455678999999999999999654433
>d1th8a_ d.122.1.3 (A:) Anti-sigma factor spoIIab {Bacillus stearothermophilus [TaxId: 1422]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: Histidine kinase
domain: Anti-sigma factor spoIIab
species: Bacillus stearothermophilus [TaxId: 1422]
Probab=98.13 E-value=3e-06 Score=57.80 Aligned_cols=47 Identities=21% Similarity=0.385 Sum_probs=38.7
Q ss_pred HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCH
Q psy15895 49 VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTK 109 (124)
Q Consensus 49 v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~ 109 (124)
..+.|++.|| ++|..-+ ..++.|.|.+...++.+.|+|.|+|+||++
T Consensus 42 ~av~E~v~Na------i~ha~~~--------~~~~~I~i~~~~~~~~l~i~i~D~G~gi~~ 88 (139)
T d1th8a_ 42 TVVSEAVTNA------IIHGYNN--------DPNGIVSISVIIEDGVVHLTVRDEGVGIPD 88 (139)
T ss_dssp HHHHHHHHHH------HHTTSTT--------CTTSEEEEEEEEETTEEEEEEEECSSCCSC
T ss_pred HHHHHhhhhh------hheecCC--------CCCcEEEEEEEEecCEEEEEEccccccccc
Confidence 4567899999 7876321 356899999999999999999999999975
>d1s14a_ d.122.1.2 (A:) Topoisomerase IV subunit B {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: Topoisomerase IV subunit B
species: Escherichia coli [TaxId: 562]
Probab=96.23 E-value=0.0025 Score=44.87 Aligned_cols=42 Identities=24% Similarity=0.400 Sum_probs=28.3
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKE 110 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e 110 (124)
+-|+++||+|=... .-...|.|.+..| -.++|+|||-|||-+
T Consensus 10 v~EivDNsiDEa~a---------------G~~~~I~V~l~~D---~si~V~D~GRGIPvd 51 (168)
T d1s14a_ 10 GQEVIDNSVDEALA---------------GHAKRVDVILHAD---QSLEVIDDGRGMPVD 51 (168)
T ss_dssp HHHHHHHHHHHHHT---------------TSCSEEEEEECTT---SCEEEEECSSCCCCS
T ss_pred EeeeeecHHHHHHc---------------CCCCEEEEEEeCC---CeEEEEEEeccccee
Confidence 44799999764432 2345566665444 369999999999954
>d1pvga2 d.122.1.2 (A:7-245) DNA topoisomerase II {Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA topoisomerase II
species: Baker's yeast (Saccharomyces cerevisiae) [TaxId: 4932]
Probab=96.20 E-value=0.0044 Score=45.59 Aligned_cols=45 Identities=18% Similarity=0.343 Sum_probs=31.0
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.|+|.||.|.... . +... .|.+..+.+.-.|+|.|||-|||-+.
T Consensus 58 ~dEil~Na~D~~~r--~------------~~~~--~I~v~i~~~~~si~V~d~GrGIPv~~ 102 (239)
T d1pvga2 58 FDEILVNAADNKVR--D------------PSMK--RIDVNIHAEEHTIEVKNDGKGIPIEI 102 (239)
T ss_dssp HHHHHHHHHHHHHH--C------------TTCC--EEEEEEETTTTEEEEEEESSCCCCSB
T ss_pred cceeeecccchhhh--c------------cccc--eEEEEEeCCCCEEEEEecCcceeeee
Confidence 45799999886533 1 1223 34555556667899999999998754
>d1kija2 d.122.1.2 (A:9-220) DNA gyrase B {Thermus thermophilus [TaxId: 274]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA gyrase B
species: Thermus thermophilus [TaxId: 274]
Probab=95.58 E-value=0.0083 Score=43.08 Aligned_cols=43 Identities=23% Similarity=0.414 Sum_probs=28.2
Q ss_pred HHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCceEEEEEEcCCCCCHHH
Q psy15895 51 IRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNRILTIQDSGIGMTKEE 111 (124)
Q Consensus 51 l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~~I~I~DnGiGM~~e~ 111 (124)
+.|+|.||.|-... .....+.+.+. .+ -.|+|.|||.|||-+.
T Consensus 31 ~~Eil~Na~De~~~---------------~~~~~i~v~~~--~d-g~i~V~ddG~GIpv~~ 73 (212)
T d1kija2 31 FKEILDNAVDEALA---------------GYATEILVRLN--ED-GSLTVEDNGRGIPVDL 73 (212)
T ss_dssp HHHHHHHHHHHHHT---------------TSCCEEEEEEC--TT-SCEEEEECSSCCCCSE
T ss_pred hhhhhhhhhhhhhh---------------cCCceEEEEEc--CC-CcEEEEECCccccccc
Confidence 55799999775422 12344555443 32 3699999999998754
>d1ei1a2 d.122.1.2 (A:2-220) DNA gyrase B {Escherichia coli [TaxId: 562]}
Back Show information, alignment and structure
class: Alpha and beta proteins (a+b)
fold: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
superfamily: ATPase domain of HSP90 chaperone/DNA topoisomerase II/histidine kinase
family: DNA gyrase/MutL, N-terminal domain
domain: DNA gyrase B
species: Escherichia coli [TaxId: 562]
Probab=94.42 E-value=0.022 Score=41.18 Aligned_cols=68 Identities=15% Similarity=0.198 Sum_probs=38.8
Q ss_pred ceeEehhhhhhhHHHHhhhhcC-----cHH--HHHHHHHhhHHHHHHHHhhhcccCCCCCCCCCCCCeEEEEEEEcCCce
Q psy15895 24 EKHEFQAETRMLLDIVAKSLYS-----DKE--VFIRELISNASDALEKLRYNQLSEVMPFPTDHDHGKLEIRISTDKQNR 96 (124)
Q Consensus 24 e~~~f~~ei~~~l~ll~~~~y~-----~~~--v~l~eLl~NA~dA~~~ik~~~ln~~~~~eam~~~g~i~I~i~~~~~~~ 96 (124)
..+..-..++++..-= .+|- ... -.+-|+|.||.|-... .....+.|.+. .+ -
T Consensus 7 ~~i~~L~~lE~Vr~RP--~mYiGs~~~~~gl~~l~~Eil~Na~De~~~---------------~~~~~i~v~i~--~d-g 66 (219)
T d1ei1a2 7 SSIKVLKGLDAVRKRP--GMYIGDTDDGTGLHHMVFEVVDNAIDEALA---------------GHCKEIIVTIH--AD-N 66 (219)
T ss_dssp GGCEECCTTHHHHHCT--HHHHCCSSSSHHHHHHHHHHHHHHHHHHHT---------------TCCCEEEEEEC--TT-S
T ss_pred hhCeeecchhHHHhCC--CcEEccCCCcccchhhhHhHhhhhhhhhcC---------------CCccceeEEEc--CC-C
Confidence 4455555666654332 3342 111 2245699999765432 23445555554 33 3
Q ss_pred EEEEEEcCCCCCHHH
Q psy15895 97 ILTIQDSGIGMTKEE 111 (124)
Q Consensus 97 ~I~I~DnGiGM~~e~ 111 (124)
.|+|.|||-|||-+.
T Consensus 67 sIsV~ddGrGIPv~~ 81 (219)
T d1ei1a2 67 SVSVQDDGRGIPTGI 81 (219)
T ss_dssp CEEEEECSSCCCCSB
T ss_pred eEEEEECCccccccc
Confidence 589999999999654
